BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010031
(520 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/480 (61%), Positives = 367/480 (76%), Gaps = 1/480 (0%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T+ P +++ + P TE H ISLIH S + QL QIHAQII+HNL +SS ITTQL
Sbjct: 60 TSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQL 119
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
ISS+SL KSI+++L++F+H PKNL FN LIRGL NSHF + I HF MLR ++P+R
Sbjct: 120 ISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDR 179
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
LTYPFV KS+A L LG +HC+I++ G+E D+FVRV L DMYV++ K AFKVFDE
Sbjct: 180 LTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE 239
Query: 190 TPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+PE+ + S LLWNVLI GC K G ++KAV+LF MPKK SW +LIDGF + GD+ +
Sbjct: 240 SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDR 299
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ELF+QMPEK VVSWT M++GFS+NG++EKAL+MF +ML+ GVR N FT+VSALSACAK
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LEAG+R+H YI N L A+GTALVDMYAKCGNIE+AS VFGET++K + TWT M
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
IWG AIHG EQAI FK+MM++G +PD VFLA+LTAC +SGQV + LNFFDSMR DY
Sbjct: 420 IWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYC 479
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
IEPS+KH+T++V++L R GQ+ +AL FI +MP PDFVIWGALFCACR HK TK+AK AL
Sbjct: 480 IEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFAL 539
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/478 (61%), Positives = 368/478 (76%), Gaps = 1/478 (0%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+H PS + ETH I LIH+SN+ QL QIHAQI LHNLF++SR+ TQLISS+ KS+DY
Sbjct: 32 AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
ALSIF F NL +FN LIRGLAENS F+ +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91 ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + LGR LH ++K G+E+D+FVRV L DMYV++G+ ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WNVLINGC K+G L KA LF MP++N SW SLI+GF+R GDL +A ELF QMPEK V
Sbjct: 211 WNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSWT MINGFSQNG+ EKAL+MF++ML+ GVR ND TVVSAL AC K+GAL+ G R+HNY
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+S N F L IGTALVDMYAKCGNI++AS VF ETK KDLLTW+ MIWG AIHG ++QA
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+Q F KM +G PD +FLAILTAC +SG V LNFF+SMR DY IEP++KH+T++V+
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
LL R G++D+AL+FI MP PDFVIWGALFCACR HK+ ++A++ + L P
Sbjct: 451 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHP 508
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/469 (60%), Positives = 357/469 (76%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
ETH I LIH+SNST +LRQIH Q+ N+F+SSR+ TQ ISS S S+DYA+SIF F
Sbjct: 42 ETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFE 101
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
KN ++FN LIRGLAENS F+S IS FV ML+ + P+RLT+PFV KS A+LS +GR
Sbjct: 102 LKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRA 161
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LHC I+K G+E+D+FVRV L DMYV++ + A KVFDE+PE K+ SVL+WNVLI+G
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G L KA ELF MPKK+ SW SLI+GFM+ GD+ +A ELF +MPEK VVSWT M+NG
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQNG+ EKAL FF ML+ G R ND+T+VSALSACAK+GAL+AG+R+HNY+S N F L
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
IGTALVDMYAKCGNIE A VF ETKEK LL W+ MIWG AIHG + +A+QYF+ M +
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+GT+PD VFLA+L AC +SGQV L FFD+MR Y IEPS+KH+T+VV++L R G++D
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
+AL FI MP TPDFV+WGALFCACRTHK+ ++A++A + L P
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHP 510
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/465 (50%), Positives = 326/465 (70%), Gaps = 1/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+++
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + A+ Q+ L+
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/465 (51%), Positives = 325/465 (69%), Gaps = 2/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HA I+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +FN LIRGL EN+ F+ + HF+ ML L V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVRV L DMY + G+ AF+VF+ETP++ K ES+LLWNVL+NG
Sbjct: 148 LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ ++ A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++TV + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGT+L+DMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC SG+V L LNFFDSMR DY IEP++KH+ +VV+LL R G++D
Sbjct: 388 SGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLD 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + I LQ+ L+
Sbjct: 448 EAHELVEYMPINPDLTTWAALYRACKAHKSNR-TDIVLQNLLELD 491
>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 404
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 288/371 (77%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S N ETHII LIHSS + QL QIH QI+LHNL +SS IT QLISS+SL KSI Y+LSI
Sbjct: 30 SQNQIETHIIPLIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLRKSIAYSLSI 89
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ + PKNL++FN LIRGL +N + I HF+ +LR ++P+ LT+ FV KS+ASLSL
Sbjct: 90 FNSYHPKNLYLFNALIRGLTDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLK 149
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L R LH +I++ G+E+D+FVR+ + D+YV+L + + A KVFDE+P++ S LLWNVL
Sbjct: 150 GLARALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVL 209
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
INGC K+G +RKA+ELF MP +N ASW SLI+GF + GDL++A E F++MP K VVSWT
Sbjct: 210 INGCCKVGDMRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVVSWT 269
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+NGFSQNG+ EKAL++F +MLD V+ NDFT+VSALSACAK+GALEAG+R+H Y+ N
Sbjct: 270 TMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKYLKDN 329
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F L A+G ALVDM+AKCGNI +AS VF E KEKD++TW+ MIWG AIHG +E+AIQ F
Sbjct: 330 GFRLNRAVGNALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEAIQCF 389
Query: 386 KKMMYSGTEPD 396
K+MMY+G +PD
Sbjct: 390 KQMMYAGIQPD 400
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 110/250 (44%), Gaps = 47/250 (18%)
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+S++D +++ ++K A ++F++ P++ + W +ING + G+ KAL +F M
Sbjct: 172 ISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVLINGCCKVGDMRKALELFEDM-- 229
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
+ N S N +L++ + K G++E
Sbjct: 230 ---------------------------PLRNTASWN----------SLINGFFKIGDLEQ 252
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A F KD+++WT M+ G + +G +E+A+ F +M+ +P+ ++ L+AC
Sbjct: 253 AIEHFDRMPVKDVVSWTTMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAK 312
Query: 410 SGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
G ++ L ++ + F + +V +V++ ++ G ++ A + E D + W
Sbjct: 313 IGALEAGLRIHKYLKDNGFRLNRAVG--NALVDMHAKCGNINSASQVFKEAKE-KDIITW 369
Query: 469 GALFCACRTH 478
+ H
Sbjct: 370 SVMIWGWAIH 379
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 274/505 (54%), Gaps = 32/505 (6%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P I E I+L+ S + ++L QI AQI+ H L + + I++ S K I +A
Sbjct: 6 PVQRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARK 65
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD N +N + RG +N H + + F + R++ PN T+P + KS L
Sbjct: 66 LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEG 125
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------- 194
+ G +HC K G + ++FV L DMY + G A+KVF E E+N
Sbjct: 126 VREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIING 185
Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
V++W+VLI+G + + A ELF MP ++ SW +++
Sbjct: 186 YILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAML 245
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAND 296
+G+ G+++ ++F++MPE+ V SW +I G+ +NG + L F +ML G V ND
Sbjct: 246 NGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPND 305
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVF 354
FT+V+ LSAC+++GAL+ G VH Y G KG +G L+DMYAKCG IE A +VF
Sbjct: 306 FTLVAVLSACSRLGALDMGKWVHVY--AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF 363
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD+++W +I GLAIHG A+ F +M G EPDG F+ IL+AC + G VK
Sbjct: 364 NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVK 423
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+F SM Y I P ++H+ +V+LL R G +D+ALNFI KMP PD VIW AL A
Sbjct: 424 DGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGA 483
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIP 499
CR +K+ +IA++ALQ L + P
Sbjct: 484 CRLYKNVEIAELALQRLIELEPNNP 508
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 181/508 (35%), Positives = 284/508 (55%), Gaps = 32/508 (6%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+ KP + + E ISL+ S ++KQ+ QI AQII + + IT +L++ + K + Y
Sbjct: 29 APKPPHRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY 88
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD N+ ++N + RG A++ ++ + F M + +RPN T+P V KS
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
++ L G +HC ++K G + FV L DMY G A+K+F E E+N
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+LWN++++G + G + +A +LF MP ++V W
Sbjct: 209 INGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWN 268
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
+++ G+ G+++ LFE+MPE+ + SW A+I G++ NG + L F +ML ++ V
Sbjct: 269 TVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 328
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAAS 351
ND T+V+ LSACA++GAL+ G VH Y + GLKG + G AL+DMYAKCG IE A
Sbjct: 329 PNDATLVTVLSACARLGALDLGKWVHVYAESS--GLKGNVYVGNALMDMYAKCGIIENAI 386
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF KDL++W +I GLA+H R A+ F +M +G +PDG F+ IL AC + G
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 446
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ +F SM DY I P ++H+ +V++L+R G++++A+ F+ KMP D VIW L
Sbjct: 447 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 506
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIP 499
ACR +K+ ++A++ALQ L P
Sbjct: 507 LGACRIYKNVELAELALQRLIELEPKNP 534
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 32/509 (6%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+ K + E H ISL+ S + L+++ AQII H + + +++S K +
Sbjct: 15 SAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMA 74
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+A +FDHF + ++N + RG N+ ++ + F M + VRPN T+P V KS A
Sbjct: 75 HARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCA 134
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
+ G +HC ++K G+E + FV L D+Y A+K+F E+N
Sbjct: 135 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 194
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
V+LWN++++G +IG ++ A +LF MP ++ SW
Sbjct: 195 MISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSW 254
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGV 292
++++G+ GD++ +LFE+MPE+ V SW +I G++ NG + L F +ML D V
Sbjct: 255 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLV 314
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAA 350
ND T+V+ LSACA++GAL+ G VH Y + G KG+I G AL+DMY+KCG IE A
Sbjct: 315 VPNDATLVTVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENA 372
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF KDL+TW +MI GLA HG A+ F +M +G +PDG F+ +L +C +
Sbjct: 373 MEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHL 432
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ ++F+SM +Y I P ++H+ +V+L R G +D+A+ F+ +MP D VIW A
Sbjct: 433 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAA 492
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR +K+ +A++ALQ L P
Sbjct: 493 LLGACRIYKNIDLAELALQKLIVLEPKNP 521
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 278/508 (54%), Gaps = 32/508 (6%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+ K + E H ISL+ S + L+++ AQII H + + +++S K + +
Sbjct: 58 TQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAH 117
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FDHF + ++N + RG N+ ++ + F M + VRPN T+P V KS A
Sbjct: 118 ARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAK 177
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
+ G +HC ++K G+E + FV L D+Y A+K+F E+N
Sbjct: 178 IGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSM 237
Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+LWN++++G +IG ++ A +LF MP ++ SW
Sbjct: 238 ISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWN 297
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
++++G+ GD++ +LFE+MPE+ V SW +I G++ NG + L F +ML D V
Sbjct: 298 TMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVV 357
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAAS 351
ND T+V+ LSACA++GAL+ G VH Y + G KG+I G AL+DMY+KCG IE A
Sbjct: 358 PNDATLVTVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENAM 415
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF KDL+TW +MI GLA HG A+ F +M +G +PDG F+ +L +C + G
Sbjct: 416 EVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLG 475
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ ++F+SM +Y I P ++H+ +V+L R G +D+A+ F+ +MP D VIW AL
Sbjct: 476 LVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAAL 535
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIP 499
ACR +K+ +A++ALQ L P
Sbjct: 536 LGACRIYKNIDLAELALQKLIVLEPKNP 563
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 185/523 (35%), Positives = 276/523 (52%), Gaps = 44/523 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+ + KP + + E ISL+ + + +L QI AQI+ H L + +T I++ +
Sbjct: 10 VNQTSKPLHRVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGG 69
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A +FD N +N + RG A+ + + F M R PN T+P V KS
Sbjct: 70 IRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKS 129
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKN-- 194
A+ + G +HC++ K G + + FV L MY G A+KVF E +KN
Sbjct: 130 CATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVF 189
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
V+LWNV+++G ++G + A ELF MP ++
Sbjct: 190 AWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRD 249
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML- 288
V SW +++ G+ G+++ +LFE+MP + V SW +I G+ +NG ++AL F +ML
Sbjct: 250 VMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLV 309
Query: 289 ----------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTA 336
D V ND+TVV+ L+AC+++G LE G VH Y G KG +G A
Sbjct: 310 LVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVY--AESIGYKGNLFVGNA 367
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMYAKCG IE A VF KD++TW +I GLA+HG A+ F++M +G PD
Sbjct: 368 LIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPD 427
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
G F+ IL+AC + G V+ L F SM DY I P ++H+ +V+LL R G +DKA++ +
Sbjct: 428 GVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIV 487
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
KMP PD VIW AL ACR +K+ ++A++ALQ L + P
Sbjct: 488 RKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNP 530
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/492 (35%), Positives = 274/492 (55%), Gaps = 32/492 (6%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
+ S ++KQ+ QI AQII + + IT +L++ + K + YA +FD N+ ++
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 167
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N + RG A++ ++ + F M + +RPN T+P V KS ++ L G +HC ++K
Sbjct: 168 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 227
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------------- 194
G + FV L DMY G A+K+F E E+N
Sbjct: 228 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRL 287
Query: 195 ----KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
V+LWN++++G + G + +A +LF MP ++V W +++ G+ G+++
Sbjct: 288 FDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALE 347
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKV 309
LFE+MPE+ + SW A+I G++ NG + L F +ML ++ V ND T+V+ LSACA++
Sbjct: 348 GLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARL 407
Query: 310 GALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
GAL+ G VH Y + GLKG + G AL+DMYAKCG IE A VF KDL++W
Sbjct: 408 GALDLGKWVHVYAESS--GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNT 465
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I GLA+H R A+ F +M +G +PDG F+ IL AC + G V+ +F SM DY
Sbjct: 466 LIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDY 525
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P ++H+ +V++L+R G++++A F+ KMP D VIW L ACR +K+ ++A++A
Sbjct: 526 LIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELA 585
Query: 488 LQSSCSLNLSIP 499
LQ L P
Sbjct: 586 LQRLIELEPKNP 597
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/462 (37%), Positives = 275/462 (59%), Gaps = 10/462 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQLISSASLHKSIDYALS 84
N+ H++ + S +QL +I AQII + + I + I +S H ++ +++
Sbjct: 20 NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79
Query: 85 IFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS--KSVAS 141
IF+HF N+ +N L++ ++++ + + IS+F L L PN Y F S K+ A
Sbjct: 80 IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L+ + G+ +HC + K G E + FVR L D+Y ++G A K+FDE ++ V+
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD----VVS 195
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN LI+G G + KA +F M +KN+ SW ++I G+ R G+L++A +LFE MP + V
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNV 255
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VSW AMI G++QN + A+ +F QM + G+ ND T+VS LSACA +GAL+ G +H
Sbjct: 256 VSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 315
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+I N + +G AL DMYAKCG + A VF E E+D+++W+ +I GLA++G +
Sbjct: 316 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A +F +M+ G EP+ F+ +LTAC ++G V L +FD M Y I P ++H+ VV
Sbjct: 376 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 435
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+LLSR G++D+A + IN MP P+ ++WGAL CR +KD +
Sbjct: 436 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 477
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 260/438 (59%), Gaps = 4/438 (0%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
++A ++ N + Q IS+ S +DYA+ + N+ ++N +I+G ++
Sbjct: 1 MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ +V MLR +V P T+P + K+ +S L +H + ++G + FV+
Sbjct: 61 PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
L D Y +G+ + +VFDE PE++ V W +++G ++G + A LF MMP +N
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERD----VFAWTTMVSGLVRVGDMSSAGRLFDMMPDRN 176
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+A+W +LIDG+ R ++ A LF QMP + ++SWT MIN +SQN +AL +F +M
Sbjct: 177 LATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAK 236
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
G+ ++ T+ + +SACA +GAL+ G +H YI + F L IG+AL+DMYAKCG+++
Sbjct: 237 HGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDR 296
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
+ L+F + +EK+L W ++I GLA+HG E+A+ F KM +P+G F+++L+AC +
Sbjct: 297 SLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNH 356
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G ++ F SM D+ I P V+H+ +V+LLS+ G +++AL I M P+ VIWG
Sbjct: 357 AGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWG 416
Query: 470 ALFCACRTHKDTKIAKIA 487
AL C+ H++ +IA++A
Sbjct: 417 ALLSGCKLHRNLEIAQVA 434
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ +T +IS + ++IH I+ H I + LI + S+D +L +F
Sbjct: 242 DEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMF 301
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KNL +N +I GLA + + + ++ F M R ++PN +T+ V + L+
Sbjct: 302 FKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIE 361
Query: 147 LGRGLHCLIVKS-----GVEY-----DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
GR + + GVE+ D + L + +QL +T
Sbjct: 362 EGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRT------------MKLE 409
Query: 197 ESVLLWNVLINGC 209
+ ++W L++GC
Sbjct: 410 PNAVIWGALLSGC 422
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 276/509 (54%), Gaps = 40/509 (7%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S I E + L +N Q++Q+HAQII NL I +LIS+ SL + + A+ +
Sbjct: 15 SRRIFEERLQDLPKCAN-LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRV 73
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ N+H+ N LIR A+NS F M R + + TYPF+ K+ + S L
Sbjct: 74 FNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWL 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWN 203
+ + +H I K G+ D +V L D Y + G R A K+F++ E++ + WN
Sbjct: 134 PVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD----TVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
++ G K G LR A LF MP++++ SW +++DG+ R ++ KA ELFE+MPE+ VS
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249
Query: 264 WTAMINGFSQNGEAEKALAMF---------------------------------FQMLDA 290
W+ M+ G+S+ G+ E A MF QM+ +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G++ + V+S L+AC + G L G+R+H+ + ++ G + AL+DMYAKCGN++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + +KDL++W M+ GL +HG ++AI+ F +M G PD F+A+L +C ++
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + +++F SM Y + P V+H+ +V+LL RVG++ +A+ + MP P+ VIWGA
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR H + IAK L + L+ P
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDP 518
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/470 (36%), Positives = 266/470 (56%), Gaps = 7/470 (1%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T + + K N+ +T +S + S ST+ L++IHAQ+I+ + I T+ + S ++
Sbjct: 15 TTVTTKFKSKNSNYKT--LSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVS 72
Query: 77 -KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
++IDYA +F + + + +IRG E + + + + M + V N+ T+ FV
Sbjct: 73 ARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFV 132
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ GR +H +VK G YD F R L MY++ G A +FDE P N
Sbjct: 133 LKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHN- 191
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V+ WN +I GC G +A LFG MP++NV SW +++ G+ + G + A LF+
Sbjct: 192 ---VVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDL 248
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ VVSW +MI+ + QNG A +AL +F +M+ AGV A+ + S LSACA++GAL+ G
Sbjct: 249 MPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMG 308
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H Y+ + + TALVDMYAKCG I+ A VF K+L +W AM+ GLAIH
Sbjct: 309 RWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIH 368
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G A++ FK+M +G P+ F+A+L+AC + G V+ F+ M ++ I P V+H
Sbjct: 369 GHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEH 428
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +V++L R G +++A I MP P+ VIWGAL AC+ H T + +
Sbjct: 429 YGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGE 478
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+++I T I+S + R IHA + L + T L+ + ID A +
Sbjct: 287 ADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGV 346
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ KNL +N ++ GLA + H + + F M V PN +T+ V + + + +
Sbjct: 347 FNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSV 406
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
G + K E++ +V + D+ + G A ++ P E N V+
Sbjct: 407 EEGWKKFNQMDK---EFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPN----VV 459
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+W L+N C GY ++ G + K ++ +V L + F K + + + M
Sbjct: 460 IWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMK 519
Query: 258 EKGV 261
+ GV
Sbjct: 520 QMGV 523
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/510 (33%), Positives = 269/510 (52%), Gaps = 37/510 (7%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
+H ++++HAQII NL + +LIS+ SL ++ A+++F+ N+H++
Sbjct: 30 LHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLY 89
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N LIR +NS + F M + + + TYPF+ K+ L + +HC + K
Sbjct: 90 NTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEK 149
Query: 158 SGVEYDAFVRVHLADMY---------------------------------VQLGKTRGAF 184
G D FV L D Y V+ G A
Sbjct: 150 YGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRAR 209
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
K+FDE E++ + WN +++G K G + +A LF MP++NV SW +++ G+ + G
Sbjct: 210 KLFDEMAERD----AVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTG 265
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D++ A LF++MP K +V+WT +I+GF++ G A++A ++ QM AG++ +D T++S L+
Sbjct: 266 DMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILA 325
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA+ G L G +VH I + ALVDMYAKCG ++ A +F E +DL++
Sbjct: 326 ACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVS 385
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W M+ GLA+HG E+AIQ F KM G +PD +AIL AC ++G V L++F+SM
Sbjct: 386 WNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSME 445
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
D+ I P ++H+ +++LL R G++++A + MP P+ VIWG L ACR H +A
Sbjct: 446 RDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLA 505
Query: 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
+ L +L S P S GD
Sbjct: 506 EKVLDRLITLEQSDPGNYSMLSNIFAAAGD 535
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 263/460 (57%), Gaps = 8/460 (1%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
TE +SL++ S +QIHA ++ L + I +L+ + SL S+DYA +F
Sbjct: 4 TEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFR 63
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLS 146
+ ++ + N LIRGL E+ Q + F+ M R S P + ++ F+ K+ A+L +
Sbjct: 64 YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G LHC + G++ FV L MY + G A KVFDE PE N + WN ++
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPN----AIAWNAMV 179
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
C + G ++ ELF +MP +N+ SW ++ G+ + G+L+ A E+F +MP K VSW+
Sbjct: 180 TACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWST 239
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI GF+ NG E+A + F ++ G+R N+ ++ LSACA+ GALE G +H +I +
Sbjct: 240 MIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSG 299
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++ AL+D Y+KCGN+ A LVF E+++++WT+M+ LA+HG E+AI F
Sbjct: 300 LAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIF 359
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
KM SG PD F+++L AC ++G V+ +FD M+ Y IEPS++H+ +V+L R
Sbjct: 360 HKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGR 419
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
GQ+ KA F+ +MP +IW L AC H D K+A+
Sbjct: 420 AGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAE 459
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 21/388 (5%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
++S P ++ + I+ + S + Q+H Q ++H L + T LIS +
Sbjct: 98 RNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFV 157
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+A +FD N +N ++ + F M VR N +++ +
Sbjct: 158 GFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLM---PVR-NLMSWNVMLAGY 213
Query: 140 ASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L L R + + +K V + + + Y + AF F E K +
Sbjct: 214 TKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFE-----EAFSFFRELQRKGMRPN 268
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFE 254
+++ C++ G L L G + K +A VS L+D + + G++ A +FE
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328
Query: 255 Q-MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ M E+ +VSWT+M+ + +G E+A+ +F +M ++G+R ++ +S L AC+ G +E
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388
Query: 314 AGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIW 370
G + + + ++ +I +VD+Y + G ++ A V + W ++
Sbjct: 389 QGCEYFDKMK-GMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLG 447
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
++HG + A Q +++ S +P+ +
Sbjct: 448 ACSMHGDVKLAEQVKERL--SELDPNNS 473
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 165/481 (34%), Positives = 265/481 (55%), Gaps = 10/481 (2%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN--STKQLRQIHAQIILHNLFASSRIT 66
L + P + P++ + + ++ L S + S + L Q+HA ++ F ++
Sbjct: 9 LPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVS 68
Query: 67 TQLISS-ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
L+ A+ H S D+AL +F N+ I+N++I+G EN+ I +F + +
Sbjct: 69 GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVID 127
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
RPN+ TYP + K+ + + GR +H +VK G+ D ++ MY G+ A
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDAR 187
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
K+F + V+ WN +I+G K G L A LF MP KN+ SW +I+G + G
Sbjct: 188 KMF-----YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGG 242
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L A +LF++M E+ +SW++M++G+ G ++AL +F QM R F + S L+
Sbjct: 243 NLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLA 302
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC+ +GA++ G VH Y+ N L +GTAL+DMYAKCG ++ VF E KE+++ T
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFT 362
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W AMI GLAIHGR E A++ F K+ +P+G + +LTAC ++G V L F +MR
Sbjct: 363 WNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y ++P ++H+ +V+LL R G +A + IN MP P+ +WGAL ACR H + +A
Sbjct: 423 EFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
Query: 485 K 485
+
Sbjct: 483 E 483
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/462 (37%), Positives = 264/462 (57%), Gaps = 8/462 (1%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSI 85
N T+ SL+ + S K L+Q+HA + L I +L+ S+ S+ ++DYA +
Sbjct: 2 NHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRL 61
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSL 144
F HF ++ + N LIRGLAE+ Q+ + FV M R P + ++ F+ K+ AS
Sbjct: 62 FLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRS 121
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G LHC + G++ FV L MY + G A KVF+E E N V+ WN
Sbjct: 122 LESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPN----VVAWNA 177
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ C + G ++ A +F MP +N+ SW ++ G+ + G+L+ A +LF +MP K VSW
Sbjct: 178 VVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSW 237
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+ MI GF+ NG +A F ++ G+R N+ ++ ALSACA GA+E G +H +I
Sbjct: 238 STMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEK 297
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQ 383
+ F ++ AL+D Y+KCGN+ A LVF EK +++WT+MI GLA+HG E+AIQ
Sbjct: 298 SGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQ 357
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M SG PDG F++IL AC ++G ++ +F M+ Y IEP+++H+ +V+L
Sbjct: 358 LFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLY 417
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
R GQ+DKA FI MP P +IW L AC H + K+A+
Sbjct: 418 GRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAE 459
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 267/489 (54%), Gaps = 14/489 (2%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN--STKQLRQIHAQIILHNLFASSRIT 66
L + P + P++ + + ++ L S + S + L Q+H ++ F ++
Sbjct: 9 LPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVS 68
Query: 67 TQLISS-ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
L+ A+ H S D+AL +F N+ I+N++I+G EN+ I +F + +
Sbjct: 69 GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVID 127
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
RPN+ TYP + K+ + + GR +H +VK G+ D ++ MY G+ A
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDAR 187
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
K+F + V+ WN +I+G K G L A LF MP KN+ SW +I+G + G
Sbjct: 188 KMF-----YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGG 242
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L A +LF++M E+ +SW++M++G+ G ++AL +F QM R F + S L+
Sbjct: 243 NLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLA 302
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC+ +GA++ G VH Y+ N L +GTAL+DMYAKCG ++ VF E KE+++ T
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFT 362
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W AMI GLAIHGR E A++ F K+ +P+G + +LTAC ++G V L F +MR
Sbjct: 363 WNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD---- 480
Y ++P ++H+ +V+LL R G +A + IN MP P+ +WGAL ACR H +
Sbjct: 423 EFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
Query: 481 TKIAKIALQ 489
++ KI L+
Sbjct: 483 ERVGKILLE 491
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 179/512 (34%), Positives = 279/512 (54%), Gaps = 43/512 (8%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRIT 66
+L ++++ T N ++ PSN I+SL + + + L+Q+HAQII H N
Sbjct: 78 KLQSSMSRTPN-PLTNPPSN----PQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSAL 132
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
L + + + YA +IF H ++N LIR L+ + + + ML+ ++
Sbjct: 133 ASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLK 192
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK- 185
P+ +TYPFV K+ S+ G +H +VKSG E D+++ L +Y GK GA K
Sbjct: 193 PDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYAN-GKDLGAAKQ 251
Query: 186 -------------------------------VFDETPEKNKSESVLLWNVLINGCSKIGY 214
VFD + V+ WN +ING + +G
Sbjct: 252 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD----RMVCRDVISWNTMINGYAIVGK 307
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ +A LF MP++N+ SW S++ GF++ G+++ A LF +MP + VVSW +M+ ++Q
Sbjct: 308 IDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G+ +ALA+F QM GV+ + TVVS LSACA +GAL+ G+ +H YI+ N + +G
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 427
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TALVDMYAKCG I A+ VF + KD+L W +I G+AIHG ++A Q FK+M +G E
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ F+AIL+AC ++G V D M Y IEP V+H+ V++LL+R G +++A+
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAME 547
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
I MP P+ GAL CR H + ++ ++
Sbjct: 548 LIGTMPMEPNPSALGALLGGCRIHGNFELGEM 579
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 266/489 (54%), Gaps = 38/489 (7%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
+S +H + Q++Q+HAQI+ NL + +LIS+ SL + + A + F+ N+
Sbjct: 24 LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNV 83
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
H++N +IR + NS + F M R + T+PF+ K L + +H
Sbjct: 84 HLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQ 143
Query: 155 IVKSGVEYDAFVRVHLADMY---------------VQLGKTRG----------------- 182
I K G D FV L D Y V +G R
Sbjct: 144 IEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLY 203
Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
A KVFDE PEK+ + WN +++G K+G + A +LF MP++NV SW +++ G+
Sbjct: 204 EEARKVFDEMPEKDG----ISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGY 259
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ GD++ A LF++MP K +VSWT +++GF++ G A +A+++F QM A ++ ++ TV+
Sbjct: 260 CKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVM 319
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L+ACA+ G L G ++H I N+F I ALVDMYAKCG + A VF + K K
Sbjct: 320 SILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNK 379
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D+++W AM+ GLA+HG +A++ FK+M G P+ + +L AC ++G + + +F
Sbjct: 380 DVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYF 439
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+M DY + P V+H+ +V+LL R G++++A+ I MP P+ +IWG L ACR H
Sbjct: 440 STMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNA 499
Query: 481 TKIAKIALQ 489
++A+ L
Sbjct: 500 VELAREVLD 508
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 241/439 (54%), Gaps = 28/439 (6%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +FD N I+N + RG ++N + I F M L V PN T+P + KS
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---- 194
++ L G +HC ++KSG + FV L DMY G A++VF E E+N
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 195 -----------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
++LWN +I+G + + +A ELF MP K+V
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DA 290
SW ++++G+ GD+ LFE+MPE+ V SW A+I G+++NG + L+ F +ML D
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
V ND T+V+ LSACA++GAL+ G VH Y + + + AL+DMYAKCG +E A
Sbjct: 241 TVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA 300
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF KDL++W +I GLA+HG A+ F M +G PDG F+ IL AC +
Sbjct: 301 LDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHM 360
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ ++F SM DY I P ++H+ +V+LL R G + A++FI KMP D VIW A
Sbjct: 361 GLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAA 420
Query: 471 LFCACRTHKDTKIAKIALQ 489
L ACR +K+ ++A++AL+
Sbjct: 421 LLGACRVYKNVELAELALE 439
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 279/499 (55%), Gaps = 12/499 (2%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDY 81
S++ I+S + S +L Q HA I+ +H+ FA+SR+ +S+ S ++I Y
Sbjct: 2 SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIAS-VSTNSHAQAIPY 60
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A SIF N +++N +IR A + ++ ++ F ML SV P++ T+ F KS S
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
S + GR +H ++K+G+ D F++ L +Y G A + D E++ V+
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD----VVS 176
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN L++ ++ G + A LF M ++NV SW +I G++ G L++A +F + P K V
Sbjct: 177 WNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNV 236
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW AMI G+S G + L +F M AGV+ ++ T+VS LSACA VGAL G VH Y
Sbjct: 237 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 296
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N + G + TALVDMY+KCG+IE A VF KD+ TW ++I GL+ HG + A
Sbjct: 297 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 356
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+Q F +M+ G +P+ F+ +L+AC +G + F+ M + I+P+++H+ +V+
Sbjct: 357 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 416
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
LL RVG +++A + KMP+ V+W +L ACR H + ++A+ Q L LS ++
Sbjct: 417 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQK--LLELSPQES 474
Query: 502 MSYCQTFMQQKGDGRTWRE 520
S+ Q GR W++
Sbjct: 475 SSFVQLSNMYASMGR-WKD 492
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/482 (34%), Positives = 270/482 (56%), Gaps = 12/482 (2%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTK--QLRQIHAQIILHNLFASSRITTQLISS- 72
+ + + +K ++ +++ I+ L+++ +ST L+Q+HA + F ++ L+
Sbjct: 13 SKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCY 72
Query: 73 ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
A+ H S +++AL +F++ N+ +FN++I+G +N+ I + M+ RPN+ T
Sbjct: 73 ANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFT 132
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
YP + K+ + G +H ++K G+ D +R MY G+ GA ++ E
Sbjct: 133 YPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGE-- 190
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
+ + V+ +N +I+G K G + A ELF M KNV SW ++ G + G +++A E
Sbjct: 191 --DGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARE 248
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF +M EK +SW+AMI+G+ + G ++AL +F M +R F + S L+ACA +GA
Sbjct: 249 LFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGA 308
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
L+ G +H Y++ N +GTALVDMYAKCG ++ A VF + ++K++ TW AMI G
Sbjct: 309 LDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICG 368
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
L +HGR E AI+ F KM P+G L +L+AC +SG V L F+SM Y IEP
Sbjct: 369 LGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEP 428
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT----KIAKIA 487
++H+ VV+LL R G + +A + MP P +WGAL ACR H D ++ KI
Sbjct: 429 GMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKIL 488
Query: 488 LQ 489
L+
Sbjct: 489 LE 490
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/497 (32%), Positives = 273/497 (54%), Gaps = 43/497 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
LI + K L+ IHA ++ L + + +++ + + +Y+ I D N+ +
Sbjct: 16 LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN +IRGL N FQ I + M + + P+ T+PFV K+ A + LG +H L+V
Sbjct: 76 FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K+G E DAFV++ L ++Y + G AFKVFD+ P+KN + W I+G +G R
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFAS----WTATISGYVGVGKCR 191
Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
+A+++F G+ P +NV +L+
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALV 251
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G++++A +F+ M EK +VSW++MI G++ NG ++AL +FF+ML+ G++ + +
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+V L +CA++GALE G N I+ N+F +GTAL+DMYAKCG ++ A VF
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++KD + W A I GLA+ G + A+ F +M SG +PD F+ +L AC ++G V+
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+F+SM + + P ++H+ +V+LL R G +D+A I MP + ++WGAL CR
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491
Query: 478 HKDTKIAKIALQSSCSL 494
H+DT++ ++ L+ +L
Sbjct: 492 HRDTQLVEVVLKKLIAL 508
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 186/374 (49%), Gaps = 45/374 (12%)
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
++ + S L + +H +++ G++ D ++ + G T +F++ D+T E N
Sbjct: 14 NRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPN- 72
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------------------- 232
+ L+N +I G ++++E++ M K+ ++
Sbjct: 73 ---IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129
Query: 233 ----------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+SLI+ + + G + A ++F+ +P+K SWTA I+G+ G+
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+A+ MF ++L+ G+R + F++V LSAC + G L +G + YI+ N + TA
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
LVD Y KCGN+E A VF EK++++W++MI G A +G ++A+ F KM+ G +PD
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPD 309
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+ +L +C G ++L + + + F++ SV T ++++ ++ G++D+A
Sbjct: 310 CYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVL-GTALIDMYAKCGRMDRAWEVF 368
Query: 457 NKMPETPDFVIWGA 470
M D V+W A
Sbjct: 369 RGM-RKKDRVVWNA 381
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 268/485 (55%), Gaps = 28/485 (5%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T + I +L+ + +T L Q+HA+II L I +Q ++ + + Y S+F+
Sbjct: 24 TTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 83
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ + ++N I+G +EN +S F+ M R P++ TYP + K+ + + + G
Sbjct: 84 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------- 194
H V+ GV D FV L D+Y + G+ A KVFDE E+N
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFS 203
Query: 195 ------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
++ + WN +I+G K G LR A ++F MP +NV S+ ++IDG+ +
Sbjct: 204 DLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAK 263
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
GD+ A +FE+ PE+ VV+W+A+I+G+ QNG+ +A+ +F +M V+ ++F +VS
Sbjct: 264 SGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSL 323
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKD 361
+SAC+++G+LE V +Y+ + + A + AL+DM AKCG+++ A+ +F E ++D
Sbjct: 324 MSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRD 383
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
L+++ +M+ GL+IHG QA+ F +M+ G PD F ILTAC +G V +F+
Sbjct: 384 LISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFE 443
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM+ DY I PS H+ +V+LL R G++ +A + MP P WGAL AC+ H D
Sbjct: 444 SMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDI 503
Query: 482 KIAKI 486
++ ++
Sbjct: 504 ELGEV 508
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 264/470 (56%), Gaps = 14/470 (2%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
TE +L S +Q++Q+HA ++L + +LI SS + +A +FD
Sbjct: 7 TERRQPALWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFD 66
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS------VRPNRLTYPFVSKSVAS 141
+ ++N LIRG A + + +S + M R S VRP++ T+PFV ++ A+
Sbjct: 67 RIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAA 126
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ G +H +VK+G E DAFVR L M+ G A +FD E +
Sbjct: 127 MGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFD----GEAREDAVA 182
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
W+ +I+G ++ G + A ELF P K++ SW +I + + GD+ A ELF+ P++ V
Sbjct: 183 WSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDV 242
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW AMI+G+ + G ++A+ +F QM G + + T++S LSACA G ++AG R+H +
Sbjct: 243 VSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRF 302
Query: 322 ISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+S + G +G AL+DMYAKCG++ +A VF ++K++ TW ++I GLA+HG
Sbjct: 303 LSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVT 362
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+AI F+KM+ +PD F+A+L AC + G V +F+ M+ Y IEP+VKH+ +
Sbjct: 363 EAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCM 422
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
V++LSR G + +A FI M P+ VIW L ACR H + ++A+ A Q
Sbjct: 423 VDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQ 472
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 266/469 (56%), Gaps = 15/469 (3%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
T+ +L S +Q++Q+HA ++L + S +LI S+ + +A +FD
Sbjct: 7 TQRQQPALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFD 66
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-------LSVRPNRLTYPFVSKSVA 140
+ ++N LIRG A + + +S + M R +++RP++ T+PFV ++ A
Sbjct: 67 RIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACA 126
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
++ G +H +VK+G E DAFVR L M+ LG A +FD E +
Sbjct: 127 AMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD----GEAREDAV 182
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
W+ +I+G ++ G + A ELF P K++ SW +I + + GD+ A ELF+ P++
Sbjct: 183 AWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRD 242
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW AMI+G+ + G ++A+ +F QM G + + T++S LSACA G L+AG R+H
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 321 YISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
++S + G A+G AL+DMYAKCG++ +A VF ++K++ TW ++I GLA+HG
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHA 362
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++I F+KM+ +PD F+A+L AC + G V +F M+ Y IEP++KH+
Sbjct: 363 TESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGC 422
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V++LSR G + +A FI M P+ VIW L ACR H + ++A+ A
Sbjct: 423 MVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHA 471
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 266/469 (56%), Gaps = 15/469 (3%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
T+ +L S +Q++Q+HA ++L + S +LI S+ + +A +FD
Sbjct: 7 TQRQQPALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFD 66
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-------LSVRPNRLTYPFVSKSVA 140
+ ++N LIRG A + + +S + M R +++RP++ T+PFV ++ A
Sbjct: 67 RIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACA 126
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
++ G +H +VK+G E DAFVR L M+ LG A +FD E +
Sbjct: 127 AMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD----GEAREDAV 182
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
W+ +I+G ++ G + A ELF P K++ SW +I + + GD+ A ELF+ P++
Sbjct: 183 AWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRD 242
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW AMI+G+ + G ++A+ +F QM G + + T++S LSACA G L+AG R+H
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 321 YISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
++S + G A+G AL+DMYAKCG++ +A VF ++K++ TW ++I GLA+HG
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHA 362
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++I F+KM+ +PD F+A+L AC + G V +F M+ Y IEP++KH+
Sbjct: 363 TESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGC 422
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V++LSR G + +A FI M P+ VIW L ACR H + ++A+ A
Sbjct: 423 MVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHA 471
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/515 (33%), Positives = 280/515 (54%), Gaps = 44/515 (8%)
Query: 6 FNRL--TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
F+R TT+ A TTN P +N++ I +L+ + L Q+HA +I L S
Sbjct: 8 FSRFHTTTSFAKTTN------PKSNVSLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDS 61
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
+ TQ IS+++ I Y+ S+FD + ++N L+ G F IS +V M R
Sbjct: 62 FLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKRE 121
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
P+R T+P + K AS + G LH I++ GV+ D +V L ++Y + G A
Sbjct: 122 DGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCA 181
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
KVFD E+N V+ W +I G S IG L +A LF +MP++NVASW ++I G+M+
Sbjct: 182 RKVFDGMSERN----VVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKM 237
Query: 244 GDLKKAGELFEQMPEKGVVS-------------------------------WTAMINGFS 272
GD+K A + F++MPEK VVS W+A+I+G++
Sbjct: 238 GDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYT 297
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
QNG+ +A+ F +M V+ + F + S + AC+++G L+ V +Y + L+GA
Sbjct: 298 QNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGA 357
Query: 333 -IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ AL+DM AKCGN+E A +F + ++DL+++ +++ GL+IHG +QA+ F++M+
Sbjct: 358 HVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGE 417
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
PD F ILTAC +G V ++F+ MR Y + PSV H+ +V+LLSR G++ +
Sbjct: 418 DLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKE 477
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
A I +P WGAL AC+ + D+++A++
Sbjct: 478 AYELIKSVPVQSHAGAWGALLGACKLYCDSELAEV 512
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/513 (34%), Positives = 271/513 (52%), Gaps = 37/513 (7%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
IS +H +S Q++QIHAQ++ NL S + +LI++ SL + + A+++F+ ++
Sbjct: 21 ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++N LIR NS S F M V + TYPF+ K+ + + + +H
Sbjct: 81 LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140
Query: 155 IVKSGVEYDAFVRVHLADMYVQLG--KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+ K G D FV L D Y + G A KVF+ E++ + WN +I G K+
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERD----TVSWNSMIGGLVKV 196
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G L +A LF MP+++ SW +++DG+++ G++ A ELFE+MP + VVSW+ M+ G+S
Sbjct: 197 GELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYS 256
Query: 273 QNGE--------------------------AEKALA-----MFFQMLDAGVRANDFTVVS 301
+ G+ AEK LA ++ QM +AG++ +D TV+S
Sbjct: 257 KAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVIS 316
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
LSACA G L G RVH I F + AL+DMYAKCG++E A +F KD
Sbjct: 317 ILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKD 376
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+++W A+I GLA+HG E+A+Q F +M G PD F+ +L AC ++G V L++F
Sbjct: 377 VVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFH 436
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
+M DY + P V+H+ +V+LL R G++ +A ++ MP P+ +IWG L ACR H T
Sbjct: 437 AMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSAT 496
Query: 482 KIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
+A+ LS +S GD
Sbjct: 497 GLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGD 529
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 248/426 (58%), Gaps = 4/426 (0%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ Q IS+ S I+ A S F + N+ +FN LIRG + + + H++ MLR +
Sbjct: 12 LVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNN 71
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V P ++ + K+ L + G +H + K G + FV+ L + Y G G+
Sbjct: 72 VMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSR 131
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
+VFD+ PE++ V W +I+ + G + A LF MP+KNVA+W ++IDG+ + G
Sbjct: 132 RVFDDMPERD----VFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLG 187
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ + A LF QMP + ++SWT M+N +S+N ++ +A+F ++D G+ ++ T+ + +S
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA +GAL G VH Y+ F L IG++L+DMYAKCG+I+ A LVF + + K+L
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFC 307
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +I GLA HG E+A++ F +M P+ F++ILTAC ++G ++ +F SM
Sbjct: 308 WNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMV 367
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
DY I P V+H+ +V+LLS+ G ++ AL I M P+ IWGAL C+ HK+ +IA
Sbjct: 368 QDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIA 427
Query: 485 KIALQS 490
IA+Q+
Sbjct: 428 HIAVQN 433
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 15/243 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ +T T +IS + +++H ++L I + LI + SID AL +F
Sbjct: 238 DEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVF 297
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KNL +N +I GLA + + + + F M R +RPN +T+ + + +
Sbjct: 298 YKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIE 357
Query: 147 LGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVF-DETPEKNKSESVLL 201
GR +V+ +Y +V + D+ + G A ++ + T E N +
Sbjct: 358 EGRRWFMSMVQ---DYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNS----FI 410
Query: 202 WNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
W L+NGC + AV+ ++ N + L++ + + + ++ M +
Sbjct: 411 WGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKD 470
Query: 259 KGV 261
GV
Sbjct: 471 LGV 473
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/484 (34%), Positives = 263/484 (54%), Gaps = 9/484 (1%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
+I ++ K L A +I + + + Q I++ S +D A+S N+ +
Sbjct: 786 IIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFV 845
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N LI+G SH + +V MLR SV P+ TY + ++ A S G L I
Sbjct: 846 YNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFAS--GFGESLQAHIW 903
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G + ++ L Y G+ R A KVFDE PE++ + W +++ ++ +
Sbjct: 904 KFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDD----VTWTTMVSAYRQVLDMD 959
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A L MP+KN A+W LIDG+ R G+L+ A LF QMP K ++SWT MING+S+N
Sbjct: 960 SANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKR 1019
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+A+A+F++M++ G+ ++ T+ + +SACA +G LE G VH Y N F L IG+A
Sbjct: 1020 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSA 1079
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
LVDMY+KCG++E A LVF +K+L W ++I GLA HG ++A++ F KM +P+
Sbjct: 1080 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1139
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+++ TAC ++G V+ + SM DY I +V+H+ +V+L S+ G + +AL I
Sbjct: 1140 TVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELI 1199
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516
M P+ VIWGAL CR HK+ +IA+IA L + P Y + +
Sbjct: 1200 GSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFN---KLMILEPMNSGYYFLLVSMYAEQN 1256
Query: 517 TWRE 520
WR+
Sbjct: 1257 RWRD 1260
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 266/454 (58%), Gaps = 7/454 (1%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNL 94
L S + L+QIHA +I+ +++ +LI SS ++ ++ YA +F H T +
Sbjct: 19 LWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDT 78
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++N +IRG A++ + IS + M VRP++ T+PFV K+ L + +G G+H
Sbjct: 79 FMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGR 138
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+ + G E + FVR L + G A +FD + +++ V+ W+ L G ++ G
Sbjct: 139 VFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRD----VVAWSALTAGYARRGE 194
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
L A +LF MP K++ SW +I G+ ++G+++ A +LF+++P++ VV+W AMI G+
Sbjct: 195 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 254
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAI 333
G ++AL MF +M G ++ T++S LSAC +G L+AG R+H IS F L +
Sbjct: 255 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL+DMYAKCG+I A VF +EKD+ TW +++ GLA HG E++I F +M
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 374
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD F+ +L AC ++G+V+ +FD MR +Y IEP+++H+ +V+LL R G +++A
Sbjct: 375 RPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAF 434
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+FI+ M P+ ++W L ACR H + ++ + A
Sbjct: 435 DFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRA 468
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 269/478 (56%), Gaps = 5/478 (1%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
++P + PS + +++ I + ++ +L + A +I N + Q IS+
Sbjct: 21 VSPPSISMPLQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISA 80
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLT 131
+ S+ Y + F N+ ++N +I+G + + +V ML S V P T
Sbjct: 81 SFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYT 140
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + K+ + + LG+ +HC I K G E FV+ L D Y +L A KVFDE
Sbjct: 141 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 200
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
E++ W +++ +++G + A +LF MP++N A+W ++IDG+ R G+++ A
Sbjct: 201 ERD----AFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAEL 256
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF QMP K ++SWT MI +SQN + + ALA++ +M G+ ++ T+ + SACA +GA
Sbjct: 257 LFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 316
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G +H+Y+ L IG+ALVDMYAKCG+++ + L+F + +K+L W A+I G
Sbjct: 317 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 376
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA+HG E+A++ F M P+G F++IL+AC ++G V + F SM DY I P
Sbjct: 377 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 436
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
++H+ +V++LS+ G +++AL I M P+ +IWGAL C+ H + +IA+ A++
Sbjct: 437 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVE 494
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 169/491 (34%), Positives = 271/491 (55%), Gaps = 16/491 (3%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFT 90
+SL+ S QL+QI +Q++L L FASSR+ + S + +DY +I +
Sbjct: 54 LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIA--FCAISEWRDLDYCTNILFNTR 111
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
N +NV IRG ++ + + + + +L+ +P+ TYP + K+ A LSL+ +G
Sbjct: 112 NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 171
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+ ++ G + D FV + + V G GA K+FD++ ++ ++ WN +ING
Sbjct: 172 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD----LVSWNSMING- 226
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
G L A +LF M K + SW +++ G+ + G L A +LF++MP+K VV W AMI
Sbjct: 227 -YCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 285
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+ ++ALA+F +M + ++ T+VS LSAC+++GAL+ G+ +H+YI ++ L
Sbjct: 286 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 345
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
A+GTAL+DMYAKCG I A VF E ++ LTWTA+I GLA+HG AI YF +M+
Sbjct: 346 NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 405
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+ PD FL +L+AC + G V+ +F M + + P +KH++ +V+LL R G +
Sbjct: 406 DNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLL 465
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
++A I MP D V+WGALF ACR H + + + A ++ P
Sbjct: 466 EEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD---PHDSGIYVLLA 522
Query: 510 QQKGDGRTWRE 520
G+ W+E
Sbjct: 523 NMYGEAEMWKE 533
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/509 (34%), Positives = 276/509 (54%), Gaps = 40/509 (7%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S I E + L +N Q++Q+HAQII NL I +LIS+ SL + + AL +
Sbjct: 15 SRRIFEERLQDLPKCAN-LNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRV 73
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ N+H+ N LIR A NS F M R + + TYPF+ K+ + LS L
Sbjct: 74 FNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWL 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWN 203
+ + +H I K G+ D +V L D Y + G R A K+F++ E++ + WN
Sbjct: 134 PVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD----TVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
++ G K G LR A +LF MP++++ SW +++DG+ R ++ +A ELFE+MPE+ VS
Sbjct: 190 SMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVS 249
Query: 264 WTAMINGFSQNGEAEKALAMFF---------------------------------QMLDA 290
W+ M+ G+S+ G+ E A MF QM+ +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVAS 309
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+R + +S L+ACA+ G L G+R H+ I ++ ++ AL+DMYAKCG+++ A
Sbjct: 310 GLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKA 369
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + +KDL++W M+ GL +HG ++AI+ F +M G PD F+A+L +C ++
Sbjct: 370 FDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHA 429
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + +++F SM Y + P V+H+ +V+LL R G++ +A+ + MP P+ VIWGA
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGA 489
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR H + IAK L + L+ S P
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPSDP 518
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 269/478 (56%), Gaps = 5/478 (1%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
++P + PS + +++ I + ++ +L + A +I N + Q IS+
Sbjct: 118 VSPPSISMPLQPPSCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISA 177
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLT 131
+ S+ Y + F N+ ++N +I+G + + +V ML S V P T
Sbjct: 178 SFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYT 237
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + K+ + + LG+ +HC I K G E FV+ L D Y +L A KVFDE
Sbjct: 238 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 297
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
E++ W +++ +++G + A +LF MP++N A+W ++IDG+ R G+++ A
Sbjct: 298 ERD----AFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAEL 353
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF QMP K ++SWT MI +SQN + + ALA++ +M G+ ++ T+ + SACA +GA
Sbjct: 354 LFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 413
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G +H+Y+ L IG+ALVDMYAKCG+++ + L+F + +K+L W A+I G
Sbjct: 414 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 473
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA+HG E+A++ F M P+G F++IL+AC ++G V + F SM DY I P
Sbjct: 474 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
++H+ +V++LS+ G +++AL I M P+ +IWGAL C+ H + +IA+ A++
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVE 591
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 269/522 (51%), Gaps = 50/522 (9%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
L A PT S P N T ++ + + L +IHA +I L ++
Sbjct: 7 LLPAKTPTAKTSISLFPENPKT-----LILEQCKTIRDLNEIHAHLIKTRLLLKPKVAEN 61
Query: 69 LISSAS--LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
L+ SA+ L S+DYA+SIF + +N++IRG I F M SV+
Sbjct: 62 LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T+P + K + L LS G +H LI+K G FV+ L MY G+ A +V
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----------------------GM 224
FDE E+N V WN + G +K G + V+LF G
Sbjct: 182 FDEMSERN----VRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR 237
Query: 225 MPKKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+ + W+ SL+D + + G + A LF+QM + VV+W+AM
Sbjct: 238 LADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAM 297
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+G+SQ +AL +F +M A + N+ T+VS LS+CA +GALE G VH +I
Sbjct: 298 ISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRM 357
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
L +GTAL+D YAKCG++E++ VFG+ K++L+WT +I GLA +G+ ++A++YF
Sbjct: 358 KLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYL 417
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ EP+ F+ +L+AC ++G V + F SM D+ IEP ++H+ +V++L R G
Sbjct: 418 MLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAG 477
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+++A FI MP P+ VIW L +C+ HK+ +I + +L+
Sbjct: 478 LIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLK 519
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F Q+ E ++ MI GF+ +A+ +F +M + V+ ++FT L C++
Sbjct: 77 AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+ AL G ++H I FG G + L+ MYA CG +E A VF E E+++ TW +M
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA--LNFFDSMRFD 426
G G +E+ ++ F +M+ D +++LTAC ++L +N
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWIN-------R 249
Query: 427 YFIEPSVKHH----TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA------CR 476
Y E +K + T +V++ ++ GQVD A ++M + D V W A+ CR
Sbjct: 250 YVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQM-DRRDVVAWSAMISGYSQASRCR 308
Query: 477 THKD------------TKIAKIALQSSCSL 494
D +I +++ SSC++
Sbjct: 309 EALDLFHEMQKANIDPNEITMVSILSSCAV 338
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 150/417 (35%), Gaps = 102/417 (24%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
QIHA I+ + + LI + ++ A +FD + +N+ +N + G ++
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+++ + F ML L +R + +T V + L+ L LG ++ + + G++ + +
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263
Query: 168 VHLADMYV-------------------------------QLGKTRGAFKVFDETPEKNKS 196
L DMY Q + R A +F E + N
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 197 E-----------------------------------SVLLWNVLINGCSKIGYLRKAVEL 221
+V L L++ +K G + ++E+
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEA 277
FG MP KNV SW LI G G KKA E F M EK V V++ +++ S G
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLV 443
Query: 278 EKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALE----------------------A 314
++ +F M D G+ + + G +E A
Sbjct: 444 DEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503
Query: 315 GVRVHNYISCNDFGLKGAI---------GTALVDMYAKCGNIEAASLVFGETKEKDL 362
+VH + + LK I L ++YA G E A V GE KEK +
Sbjct: 504 SCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGI 560
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 190/563 (33%), Positives = 283/563 (50%), Gaps = 82/563 (14%)
Query: 15 PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQL 69
PT + + + P + + H ++L+ + S + L+QIH+QII LHN FA S++
Sbjct: 15 PTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-- 72
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
+ S ++ YAL +F+ N I+N +IRG + +S I +V ML V PN
Sbjct: 73 FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNS 132
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--------- 180
T+PF+ KS A + G+ +H ++K G+E D FV L +MY Q G+
Sbjct: 133 YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192
Query: 181 ------------------RG----AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
RG A ++F+E P ++ + WN +I G ++ G +A
Sbjct: 193 SSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD----AVSWNAMIAGYAQSGRFEEA 248
Query: 219 VELFGMMPKKNVA--------------------------SWV-------------SLIDG 239
+ F M + NVA SW+ +LID
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + GDL KA +LFE + EK ++SW MI G+S ++ALA+F +M + V ND T
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETK 358
VS L ACA +GAL+ G +H YI GL ++ T+L+DMYAKCGNIEAA VF K
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
K L +W AMI GLA+HG A++ F++M G EPD F+ +L+AC ++G V+L
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F SM DY I P ++H+ +++LL R G D+A + M PD IWG+L ACR H
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548
Query: 479 KDTKIAKIALQSSCSLNLSIPQA 501
+ ++ + A + L P A
Sbjct: 549 GNVELGEFAAKHLFELEPENPGA 571
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 142/318 (44%), Gaps = 17/318 (5%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +K ++ N T ++S S S + + + I H L ++ R+
Sbjct: 244 RFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI S +D A +F+ K++ +NV+I G + + ++ ++ F M + +V P
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKV 186
N +T+ + + A L L LG+ +H I K + + + L DMY + G A +V
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
F K +S+ WN +I+G + G+ A+ELF M + ++V ++
Sbjct: 424 F----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G ++ + F M E +S + MI+ + G ++A A+ M + ++ +
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL---MKNMEMKPDGA 536
Query: 298 TVVSALSACAKVGALEAG 315
S L AC G +E G
Sbjct: 537 IWGSLLGACRVHGNVELG 554
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 250/453 (55%), Gaps = 41/453 (9%)
Query: 37 LIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
L+ ++ + L+ IHA ++ ++FA+SR+ I S + + YA+ +
Sbjct: 23 LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTT--NLLHYAIRVASQIQNP 80
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
NL I+N LIRG + + + ++ +++ LR + P+ +T+PF+ K+ A L +G H
Sbjct: 81 NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTH 140
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+K G E D +V+ L MY +G A VF
Sbjct: 141 GQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQR----------------------- 177
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
M + +V SW +I G+ R GD K A ELF++MPE+ +V+W+ MI+G++
Sbjct: 178 ------------MCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYA 225
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+N EKA+ F + GV AN+ +V +S+CA +GAL G + H Y+ N L
Sbjct: 226 RNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLI 285
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+GTA+VDMYA+CGN+E A +VF + EKD+L WTA+I GLA+HG E+A+ YF +M G
Sbjct: 286 LGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKG 345
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
P F A+LTAC ++G V+ L F+SM+ D+ +EP ++H+ +V+LL R G++ KA
Sbjct: 346 FVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKA 405
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
F+ KMP P+ IW AL ACR HK+ ++ +
Sbjct: 406 EKFVLKMPVKPNAPIWRALLGACRIHKNVEVGE 438
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 47/332 (14%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILH-------------NLFAS------SRITT 67
+NIT ++ + Q H Q I H +++AS +R
Sbjct: 116 DNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVF 175
Query: 68 QLISS----------ASLHKSIDY--ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
Q + A H+ D A +FD +NL ++ +I G A N+ F+ +
Sbjct: 176 QRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVE 235
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
F + V N V S A L L++G H ++++ + + + + DMY
Sbjct: 236 TFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYA 295
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
+ G A VF++ PEK+ VL W LI G + GY KA+ F M KK
Sbjct: 296 RCGNVEKAVMVFEQLPEKD----VLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDI 351
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++ +++ G +++ E+FE M E + + M++ + G+ KA +
Sbjct: 352 TFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLK 411
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
M V+ N + L AC +E G RV
Sbjct: 412 M---PVKPNAPIWRALLGACRIHKNVEVGERV 440
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 259/454 (57%), Gaps = 12/454 (2%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNV 99
S + ++Q+HA + L + +L+ S+ ++ +I +A +FD + ++N
Sbjct: 19 RSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNT 78
Query: 100 LIRGLAENSHFQSCISHFVFMLRLS----VRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
LIRG A + + +S + MLR VRP++LT+PFV ++ ++ G +H +
Sbjct: 79 LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHV 138
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
VK+G E DAFV+ L M+ G A +FD E + W+ +I GC++ G +
Sbjct: 139 VKAGCESDAFVKNALIGMHASCGNLGIAAALFD----GRAREDAVAWSAMITGCARRGDI 194
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
A +LF P K++ SW +I + ++GD+ A ELF+Q+PE+ VVSW MI+G+ + G
Sbjct: 195 GAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCG 254
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS--CNDFGLKGAI 333
AL +F QM G + + T++S LSACA G L+ G R+H+ +S + G +
Sbjct: 255 SHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVL 314
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL+DMYAKCG++++A VF ++KD+ TW +++ GLA+HG ++I F+KM+
Sbjct: 315 GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKV 374
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD F+A+L AC + G V FF+ M+ Y +EP++KH+ +V++L R G + +A
Sbjct: 375 RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAF 434
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
FI+ M P+ VIW L ACR H + ++AK A
Sbjct: 435 EFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHA 468
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 190/563 (33%), Positives = 283/563 (50%), Gaps = 82/563 (14%)
Query: 15 PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQL 69
PT + + + P + + H ++L+ + S + L+QIH+QII LHN FA S++
Sbjct: 15 PTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-- 72
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
+ S ++ YAL +F+ N I+N +IRG + +S I +V ML V PN
Sbjct: 73 FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNS 132
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--------- 180
T+PF+ KS A + G+ +H ++K G+E D FV L +MY Q G+
Sbjct: 133 YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192
Query: 181 ------------------RG----AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
RG A ++F+E P ++ + WN +I G ++ G +A
Sbjct: 193 SSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD----AVSWNAMIAGYAQSGRFEEA 248
Query: 219 VELFGMMPKKNVA--------------------------SWV-------------SLIDG 239
+ F M + NVA SW+ +LID
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + GDL KA +LFE + EK ++SW MI G+S ++ALA+F +M + V ND T
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETK 358
VS L ACA +GAL+ G +H YI GL ++ T+L+DMYAKCGNIEAA VF K
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
K L +W AMI GLA+HG A++ F++M G EPD F+ +L+AC ++G V+L
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F SM DY I P ++H+ +++LL R G D+A + M PD IWG+L ACR H
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548
Query: 479 KDTKIAKIALQSSCSLNLSIPQA 501
+ ++ + A + L P A
Sbjct: 549 GNVELGEFAAKHLFELEPENPGA 571
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 142/318 (44%), Gaps = 17/318 (5%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +K ++ N T ++S S S + + + I H L ++ R+
Sbjct: 244 RFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI S +D A +F+ K++ +NV+I G + + ++ ++ F M + +V P
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKV 186
N +T+ + + A L L LG+ +H I K + + + L DMY + G A +V
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
F K +S+ WN +I+G + G+ A+ELF M + ++V ++
Sbjct: 424 F----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G ++ + F M E +S + MI+ + G ++A A+ M + ++ +
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL---MKNMEMKPDGA 536
Query: 298 TVVSALSACAKVGALEAG 315
S L AC G +E G
Sbjct: 537 IWGSLLGACRVHGNVELG 554
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 265/466 (56%), Gaps = 20/466 (4%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YAL 83
S+ +TE +SL + S L+QIH++ I + + I +++S + D YA
Sbjct: 9 SSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYAR 68
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD ++ +N++ +G + + + +S ++ ML +V+P+ TYPF+ K
Sbjct: 69 QLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSV 128
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LGR LHC +VK G++ + F L +MY G A +FD + + + V+ WN
Sbjct: 129 ALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD----VVTWN 184
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+I+G ++I KK+V SW +++ GF+ G + A + F +MPE+ VS
Sbjct: 185 AMISGYNRI--------------KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVS 230
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WTAMI+G+ + ++AL +F +M + ++ ++FT+VS L+ACA++GALE G + YI
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N +G AL+DMY KCGN+E A +F ++D TWTAM+ GLAI+G E+A+
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M+ + PD ++ +L+AC ++G V FF SM + IEP++ H+ +V+LL
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLL 410
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ G + +A I MP P+ ++WGAL ACR HKD ++A+ A++
Sbjct: 411 GKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIE 456
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 259/458 (56%), Gaps = 45/458 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSI-DYALSIFDHF 89
+S + S + L+ IHA +I + ++FA+S + S S++K++ DYA +F
Sbjct: 19 LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAAS-----CLISISINKNLLDYAAQVFYQI 73
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
NL I+N IRG + + +V R + P+ LTYPF+ K+ L +G
Sbjct: 74 QNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGI 133
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
H I++ G + D +V+ L MY
Sbjct: 134 QAHGQIIRHGFDSDVYVQNSLVTMY----------------------------------- 158
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
S +G ++ A +F + +V SW S++ G+++ GD+ A +LF++MPEK +V+W+ MI+
Sbjct: 159 STLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMIS 218
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+++N +KA+ ++F + GV AN+ +VS +++CA +GALE G R H+YI N +
Sbjct: 219 GYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTV 278
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+GTALVDMYA+CG+I+ A VF + +D L+WT +I G A+HG E+A++YF +M
Sbjct: 279 NLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRME 338
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+G P F A+L+AC + G V+ L F+SM+ DY IEP ++H+ +V+LL R G++
Sbjct: 339 KAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKL 398
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+A F+N+MP P+ IWGAL ACR HK+++IA+ A
Sbjct: 399 AEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERA 436
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 116/296 (39%), Gaps = 47/296 (15%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDY-- 81
+N+T ++ S Q H QII H + + L++ S KS Y
Sbjct: 112 DNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVF 171
Query: 82 --------------------------ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
A +FD KNL ++V+I G A+NS F I
Sbjct: 172 RRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIE 231
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
+ + V N V S A L L LG H I+++ + + + L DMY
Sbjct: 232 LYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYA 291
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
+ G A VFD+ P ++ L W LI G + GY KA+E F M K +
Sbjct: 292 RCGSIDKAIWVFDQLPGRD----ALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG---EAEK 279
++ +++ G +++ ELFE M E + + M++ + G EAEK
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEK 403
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 283/557 (50%), Gaps = 61/557 (10%)
Query: 13 IAPTTNIKSSHKPS--------NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
+ P + S+ +P+ + E H+ SL H ++++HAQ++ H L
Sbjct: 32 LTPMSTAASALRPAPRWGAPSQRRLVEQHLASLPHGLQHLHHVQELHAQLLKHGLHLDPL 91
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLR 122
++LISS +L + + + IF F F N L+R A N+ + +S F M
Sbjct: 92 AASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAM-- 149
Query: 123 LSVRPNR--LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
P R TY F+ K+++S L L R +H +VK G D +V L D Y + G
Sbjct: 150 ----PQRDSFTYSFLIKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGF 204
Query: 181 RGAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSKIG 213
A KVF+E P ++ + + WN +++G +K G
Sbjct: 205 LDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAG 264
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ A ELF MP++NV SW +++ G+ +KGD++ A +F++MP K +V+WT M++ +Q
Sbjct: 265 KMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQ 324
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
NG E+A +F QM +A V + VVS L+ACA+ G+L G R+H Y+ G +
Sbjct: 325 NGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHV 384
Query: 334 GTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
A++DM+ KCG + A VF E EKD ++W +I G A+HG ++A+ +F +M G
Sbjct: 385 CNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQG 444
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PD + +L+AC + G V+ F +M DY I P ++H+ +++LL R G +++A
Sbjct: 445 FRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEA 504
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA------LQSSCSLNLSI-------- 498
+ I MP P+ VIWG+L ACR HK+ + A+IA LQ S + N ++
Sbjct: 505 VGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEA 564
Query: 499 PQAMSYCQTFMQQKGDG 515
Q + MQ KG G
Sbjct: 565 GQWSDMAKARMQMKGTG 581
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 271/512 (52%), Gaps = 18/512 (3%)
Query: 18 NIKSSHKPSNNITE---------THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
N+ S PS+++ + ++ +I ++ K L A +I +L R+ Q
Sbjct: 6 NVHSLRVPSHHLRDFSASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQ 65
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
I++ + K +D A+S N+ ++N L +G SH + +V MLR SV P+
Sbjct: 66 FITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPS 125
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
TY + K+ + S G L I K G + ++ L D Y G+ R A KVFD
Sbjct: 126 SYTYSSLVKASSFAS--RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFD 183
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E PE++ + W +++ ++ + A L M +KN A+ LI+G+M G+L++
Sbjct: 184 EMPERDD----IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF QMP K ++SWT MI G+SQN +A+A+F++M++ G+ ++ T+ + +SACA
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LE G VH Y N F L IG+ALVDMY+KCG++E A LVF +K+L W ++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG ++A++ F KM +P+ F+++ TAC ++G V + SM DY
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I +V+H+ +V+L S+ G + +AL I M P+ VIWGAL CR HK+ IA+IA
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L P Y + + WR+
Sbjct: 480 NKLMVLE---PMNSGYYFLLVSMYAEQNRWRD 508
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 247/449 (55%), Gaps = 43/449 (9%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+Y +F N+ ++N +IRGL N F I + M PN T+PFV K+
Sbjct: 63 NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A L L LG +H L+VK G + D FV+ L +Y + G A KVFD+ P+KN V
Sbjct: 123 ARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN----V 178
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------SWV--- 234
+ W +I+G +G R+A+++F + + N+A W+
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238
Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
SL+D + + G+++KA +F+ MPEK +VSW AMI G++ NG ++A
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+ +F QM V+ + +TVV LSACA++GALE G V + N+F +GTAL+D+
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDL 358
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG++ A VF KEKD + W A+I GLA++G + + F ++ G +PDG F
Sbjct: 359 YAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTF 418
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +L C ++G V +F+SM + + PS++H+ +V+LL R G +D+A I MP
Sbjct: 419 IGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMP 478
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ ++WGAL ACR H+DT++A++AL+
Sbjct: 479 MEANAIVWGALLGACRIHRDTQLAELALK 507
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/538 (32%), Positives = 283/538 (52%), Gaps = 54/538 (10%)
Query: 25 PSNN-ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
PS + E H+ SL H L+++HAQ++ H L ++L+SS +LH+ + +
Sbjct: 17 PSQRRLVEQHLASLPHGLPRLHHLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASR 76
Query: 84 SIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNR--LTYPFVSKSV 139
+F F + F N L+R A N+ + ++ F M P+R TY F+ K++
Sbjct: 77 GVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAM------PHRDSFTYSFLIKAL 130
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---- 195
+S + L R +H +VK G D +V L D Y + G A KVF+E P ++
Sbjct: 131 SSAGVAPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWN 189
Query: 196 -----------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
+ + WN L++G +K G + +A +LF MP++NV S
Sbjct: 190 SAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVS 249
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
W +++ G+ +KGD++ A +F++MP K +V+WT M++ +QNG E+A +F QM +A V
Sbjct: 250 WSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASV 309
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ VVS L+ACA+ G+L G R+H Y+ G + AL+DM+ KCG I A
Sbjct: 310 ELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADY 369
Query: 353 VFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF E EKD ++W +I G A+HG ++A+ +F +M G PD + +L+AC + G
Sbjct: 370 VFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMG 429
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ +F +M DY + P ++H+ +++LL R G + +A++ I MP P+ VIWG+L
Sbjct: 430 FVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSL 489
Query: 472 FCACRTHKDTKIAKIA------LQSSCSLNLSIPQAM--------SYCQTFMQQKGDG 515
ACR HK+ + A+IA LQ S + N ++ ++ + MQ KG G
Sbjct: 490 LSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTG 547
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 258/454 (56%), Gaps = 12/454 (2%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNV 99
S +Q++Q+HA ++L + +L+ S+ ++ +I +A +FD +L ++N
Sbjct: 19 RSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNT 78
Query: 100 LIRGLAENSHFQSCISHFVFMLRLS----VRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
LIRG A + + +S + M R VRP+++T+PFV ++ ++ G +H +
Sbjct: 79 LIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHV 138
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
VK+G E DAFVR L M+ G+ A +FD E + W+ +I GC++ G +
Sbjct: 139 VKAGCESDAFVRNALIGMHASCGELGVASALFD----GRAREDAVAWSAMITGCARRGDI 194
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
A +LF P K+ SW +I + ++G++ A LF ++PE+ VVSW AMI+G + G
Sbjct: 195 VAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCG 254
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN--DFGLKGAI 333
A+ +F QM G + + T++S LSACA G ++ G R+H+ +S G +
Sbjct: 255 SHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVIL 314
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL+DMYAKCG++++A VF ++KD+ TW ++I GLA+HG ++I FKKM+
Sbjct: 315 GNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKV 374
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD F+A+L AC + G V +F+ M+ Y IEP+VKH+ +V++L R G + +A
Sbjct: 375 RPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAF 434
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
FI+ M P+ VIW L ACR H + ++A+ A
Sbjct: 435 EFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHA 468
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 182/488 (37%), Positives = 267/488 (54%), Gaps = 48/488 (9%)
Query: 25 PSNN-ITETHIISLIHSSNST-KQLRQIHAQII----LHNLFASSRITTQLISSASLHKS 78
PS+ ++ + LI + ST ++L+QIHA +I + + A+SR+ +S S
Sbjct: 17 PSSGFVSGNTCLRLIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPS---D 73
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVS 136
+YA +F KN ++N +IRG + +S + IS F+ ML SV+P RLTYP V
Sbjct: 74 RNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
K+ ASL L GR LH ++K G+E D+F+R + MYV G A+++F
Sbjct: 134 KAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLF--------- 184
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
GMM +V +W S+I G + G + +A +LF++M
Sbjct: 185 -------------------------VGMM-GFDVVAWNSIIMGLAKCGLIDQAQKLFDEM 218
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P++ VSW +MI+GF +NG + AL MF +M + V+ + FT+VS L+ACA +GA E G
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGR 278
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+H YI N F L + TAL+DMY KCG E VF K L W +MI GLA +G
Sbjct: 279 WIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNG 338
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E+A+ F ++ +G EPD F+ +LTAC +SG+V A FF MR Y IEPS+KH+
Sbjct: 339 CEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHY 398
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
T +VN+L G +D+A I KMP D +IW +L ACR + + ++AK A ++C NL
Sbjct: 399 TCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRA--ANCLKNL 456
Query: 497 SIPQAMSY 504
+ Y
Sbjct: 457 DPDETCGY 464
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 270/512 (52%), Gaps = 18/512 (3%)
Query: 18 NIKSSHKPSNNITE---------THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
N+ S PS+++ + ++ +I ++ K L A +I +L R+ Q
Sbjct: 6 NVHSLRVPSHHLRDFSASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQ 65
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
I++ + K +D A+S N+ ++N L +G SH + +V MLR SV P+
Sbjct: 66 FITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPS 125
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
TY + K+ + S G L I K G + ++ L D Y G R A KVFD
Sbjct: 126 SYTYSSLVKASSFAS--RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFD 183
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E PE++ + W +++ ++ + A L M +KN A+ LI+G+M G+L++
Sbjct: 184 EMPERDD----IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF QMP K ++SWT MI G+SQN +A+A+F++M++ G+ ++ T+ + +SACA
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LE G VH Y N F L IG+ALVDMY+KCG++E A LVF +K+L W ++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG ++A++ F KM +P+ F+++ TAC ++G V + SM DY
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I +V+H+ +V+L S+ G + +AL I M P+ VIWGAL CR HK+ IA+IA
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L P Y + + WR+
Sbjct: 480 NKLMVLE---PMNSGYYFLLVSMYAEQNRWRD 508
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/484 (34%), Positives = 260/484 (53%), Gaps = 9/484 (1%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
+I ++ K L A +I +L R+ Q I++ + K +D A+S N+ +
Sbjct: 779 IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFV 838
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N L +G SH + +V MLR SV P+ TY + K+ + S G L I
Sbjct: 839 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS--RFGESLQAHIW 896
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G + ++ L D Y G+ R A KVFDE PE++ + W +++ ++ +
Sbjct: 897 KFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD----IAWTTMVSAYRRVLDMD 952
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A L M +KN A+ LI+G+M G+L++A LF QMP K ++SWT MI G+SQN
Sbjct: 953 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 1012
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+A+A+F++M++ G+ ++ T+ + +SACA +G LE G VH Y N F L IG+A
Sbjct: 1013 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 1072
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
LVDMY+KCG++E A LVF +K+L W ++I GLA HG ++A++ F KM +P+
Sbjct: 1073 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1132
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+++ TAC ++G V + SM DY I +V+H+ +V+L S+ G + +AL I
Sbjct: 1133 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 1192
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516
M P+ VIWGAL CR HK+ IA+IA L P Y + +
Sbjct: 1193 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLE---PMNSGYYFLLVSMYAEQN 1249
Query: 517 TWRE 520
WR+
Sbjct: 1250 RWRD 1253
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 256/456 (56%), Gaps = 8/456 (1%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
+SL+ +S K +QIHAQI L + +L+ + ++ ++ YAL +F HF
Sbjct: 6 VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNP 65
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ + N LIR L+ + S + F+ + R ++ P+ T+ F K+VA+ L G L
Sbjct: 66 DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQL 125
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H + G + FV L MY + G + A +VFDE E N V+ WN ++ +
Sbjct: 126 HSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPN----VVTWNAVLTAAFR 181
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
G + A ++FG MP +N+ SW ++ G+ + G+L A +F +MP + VSW+ MI GF
Sbjct: 182 CGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGF 241
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ NG ++A F ++L +R N+ ++ LSACA+ GA E G +H ++ F G
Sbjct: 242 AHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVG 301
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
++ AL+D Y+KCGN+ A LVF + +++WT++I GLA+HG E+AIQ F +M
Sbjct: 302 SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG PDG F+++L AC +SG V+ F M+ Y IEP+++H+ +V+L R ++
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQ 421
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
KA FI +MP +P+ +IW L AC H + ++A++
Sbjct: 422 KAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAEL 457
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 248/452 (54%), Gaps = 39/452 (8%)
Query: 38 IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ + + L+ IHA +I + ++FA+SR+ + +S IDYA IF N
Sbjct: 24 LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L IFN +IRG + + + +V R + P+ LT+PF+ KS L +S+G H
Sbjct: 84 LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I+K G E D +V+ L MY G T A +F ++ V+ W +I G +K G
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF----QRMYYVDVVSWTSMIRGFNKCG 199
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ A +LF MP+KN+ +W ++I G+ + KA ELF+ + +
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ-------------- 245
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
GVRAN+ +VS +S+CA +GALE G R H+Y+ N L +
Sbjct: 246 -----------------GVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLIL 288
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
GTALVDMYA+CG+I+ A VF + E+D L+WTA+I GLA+HG E++++YF M+ +G
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGL 348
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P F A+L+AC + G V+ F+SM+ D+ +EP ++H+ +V+LL R G++++A
Sbjct: 349 TPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAE 408
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
F+ KMP P+ +WGAL ACR HK+ +I +
Sbjct: 409 RFVLKMPVKPNAPVWGALLGACRIHKNAEIGE 440
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 274/507 (54%), Gaps = 42/507 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI S+ QL+QIHA++++ L S + T+LI ++S I +A +FD
Sbjct: 20 SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ + LS L +GR
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G + D FV+ L +Y + + A VF+ P ++ ++ W +++
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
++ G +A+E+F M K +V WV+L+ + F DLK
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A +A+ MF +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE ++ Y+ +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
LVF T ++D++ W+AMI G +HGR +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF+ M D+ I P +H+ V++LL R G +D+A I MP P +WGA
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L AC+ H+ ++ + A Q S++ S
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPS 523
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 192/434 (44%), Gaps = 48/434 (11%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N A+ +N++ + ++ T H++ + + R +HAQ+ A +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 67 TQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
LI+ + + + A ++F+ + + + ++ A+N + F M ++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+P+ + V + L L GR +H +VK G+E + + + L MY + G+ A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVS-- 235
+FD K KS +++LWN +I+G +K GY R+A+++F M K+V S +S
Sbjct: 278 ILFD----KMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333
Query: 236 ------------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
LID F + G ++ A +F++ ++ VV W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI G+ +G A +A++++ M GV ND T + L AC G + G N ++ +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ ++D+ + G+++ A V + + W A++ H R+ + +Y
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH-RHVELGEY 512
Query: 385 FKKMMYSGTEPDGT 398
+ ++S +P T
Sbjct: 513 AAQQLFS-IDPSNT 525
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 246/424 (58%), Gaps = 12/424 (2%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS----VR 126
S+ ++ +I +A +FD + ++N LIRG A + + +S + MLR VR
Sbjct: 20 SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVR 79
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P++LT+PFV ++ ++ G +H +VK+G E DAFV+ L M+ G A +
Sbjct: 80 PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 139
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD E + W+ +I GC++ G + A +LF P K++ SW +I + ++GD+
Sbjct: 140 FDGRAR----EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A ELF+Q+PE+ VVSW MI+G+ + G AL +F QM G + + T++S LSAC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 307 AKVGALEAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A G L+ G R+H+ +S + F G +G AL+DMYAKCG++++A VF ++KD+
Sbjct: 256 ADSGDLDVGQRLHSSLS-DMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 314
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
TW +++ GLA+HG ++I F+KM+ PD F+A+L AC + G V FF+ M
Sbjct: 315 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 374
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+ Y +EP++KH+ +V++L R G + +A FI+ M P+ VIW L ACR H + ++
Sbjct: 375 QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 434
Query: 484 AKIA 487
AK A
Sbjct: 435 AKHA 438
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 135/336 (40%), Gaps = 68/336 (20%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I++ + + A +FD +++ +NV+I G + F M R+ +P+
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T + + A L +G+ LH L+DM+ +R F
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS---------------SLSDMF-----SRNGF---- 280
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
V+L N LI+ +K G ++ A E+F M K+V++W S++ G
Sbjct: 281 ---------PVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGG--------- 322
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ +G +++ MF +ML VR ++ T V+ L AC+
Sbjct: 323 ----------------------LALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSH 360
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTW 365
G ++ G N + + + ++ I +VDM + G ++ A K E + + W
Sbjct: 361 GGMVDKGREFFNLMQ-HKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
++ +HG E A ++++ + + G L
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVL 455
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 168/464 (36%), Positives = 263/464 (56%), Gaps = 14/464 (3%)
Query: 35 ISLIHSSNSTKQLRQIHAQII--LHNLFASSRITTQLISSASLHKSID--YALSIFDHFT 90
+S + + S K L+QIHA II + + A I+T+L + + ID YALS+
Sbjct: 41 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 100
Query: 91 PKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
NL ++N +IRGLA N+ + + ML + P+ T PFV K+ A + G
Sbjct: 101 TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H +K G+ D +V L MY R A KVFD +P+++ ++ W +I G
Sbjct: 161 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD----LVSWTTMIQGY 216
Query: 210 SKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
K+G+ R+ V L+ ++ NV V +L+D +++ GD A ++F++MP K VVSW
Sbjct: 217 VKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 275
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+MI+G +Q G+ +++L MF +M GV+ +D T+V+ L++CA +G LE G VH Y+ N
Sbjct: 276 SMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN 335
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
G IG ALVDMYAKCG+I+ A VF KD+ ++TAMI GLA+HG+ +A+ F
Sbjct: 336 QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLF 395
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M G EPD F+ +LTAC + G V+ +F+ M Y + P ++H+ +V+LL R
Sbjct: 396 SEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGR 455
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
G +++A FI MP PD + GAL AC+ H ++ + ++
Sbjct: 456 AGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMK 499
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 168/417 (40%), Gaps = 83/417 (19%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+N T ++ S + ++ ++H Q I L + ++ L+ ++ I A +F
Sbjct: 139 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 198
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D ++L + +I+G + +
Sbjct: 199 DTSPQRDLVSWTTMIQGYVK-----------------------------------MGFAR 223
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G GL+ +I S V D FV L DMY++ G A KVF E P KN V+ WN +I
Sbjct: 224 EGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN----VVSWNSMI 278
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV---------- 234
+G ++ G ++++ +F M + V WV
Sbjct: 279 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 338
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+L+D + + G + +A +F+ M K V S+TAMI G + +G+ KAL +F +M
Sbjct: 339 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 398
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG 345
G+ ++ T V L+AC+ VG +E G + +S + L+ + +VD+ + G
Sbjct: 399 PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMS-TIYNLRPQLEHYGCMVDLLGRAG 457
Query: 346 NI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
I EA + E D A++ IHG+ E KK+ DG L
Sbjct: 458 LINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVL 514
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 257/466 (55%), Gaps = 42/466 (9%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + ++ + + +L+ IHA +I ++L SS + T+++ + + YA +F
Sbjct: 14 ENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVK 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-------VRPNRLTYPFVSKSVASLS 143
N +++N +IR N + I + MLRL + P+R T+PFV KS + L
Sbjct: 74 EPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLV 133
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+LG+ +H + K G P+ N + + N
Sbjct: 134 CYNLGKQVHAHLCKFG-------------------------------PKSN----ITMEN 158
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
LI+ +K L A ++F M +++ SW S+I G + G ++KAG LF+ MP + +VS
Sbjct: 159 ALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVS 218
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WTAMI+G+++ G AL +F QM GV ++ +++S L ACA++GALE G +H Y
Sbjct: 219 WTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCD 278
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N K +I AL++MY+KCG I A +F + + D+++W+ MI GLA HG+ +AI+
Sbjct: 279 RNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIE 338
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
FK+M + EP+G FL +L+AC ++G L +FDSM DY IEP V+H+ +V++L
Sbjct: 339 LFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDIL 398
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G++ +AL+ I KMP PD IWG+L +CRTH + IA IA++
Sbjct: 399 GRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAME 444
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 270/457 (59%), Gaps = 11/457 (2%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKN 93
SL + + L+Q+HA +I++ L +++ + +LI S+ + ++DYA +F + +
Sbjct: 18 SLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPD 77
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N +IRG A+ + +S + M VRP++ T+ FV K+ LS + LG G+H
Sbjct: 78 IFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHG 137
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++KSG + + FVR L + G A +FD + ++ V+ W+ L G ++ G
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKR----EVVPWSALTAGYARRG 193
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
L A +LF MP K++ SW +I + + G+++KA +LF+++P+K VV+W AMI G+
Sbjct: 194 KLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVL 253
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI---SCNDFGLK 330
+ ++AL MF M D G R +D T++S LSA A +G LE G ++H I C D +
Sbjct: 254 SRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSV- 312
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ AL+DMYAKCG+I A VF ++KD +W ++I GLA+HG E++I F++M+
Sbjct: 313 -LLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLR 371
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+P+ F+A+L AC ++G+V+ +F+ M+ + IEP++KH+ +V++L R G +
Sbjct: 372 LKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLI 431
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+A +FI+ M P+ +IW L ACR H D ++ + A
Sbjct: 432 EAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRA 468
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 245/423 (57%), Gaps = 10/423 (2%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS----VR 126
S+ ++ +I +A +FD + ++N LIRG A + + +S + MLR VR
Sbjct: 20 SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVR 79
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P++LT+PFV ++ ++ G +H +VK+G E DAFV+ L M+ G A +
Sbjct: 80 PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 139
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD E + W+ +I GC++ G + A +LF P K++ SW +I + ++GD+
Sbjct: 140 FD----GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A ELF+Q+PE+ VVSW MI+G+ + G AL +F QM G + + T++S LSAC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 307 AKVGALEAGVRVHNYIS--CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A G L+ G R+H+ +S + G +G AL+DMYAKCG++++A VF ++KD+ T
Sbjct: 256 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVST 315
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +++ GLA+HG ++I F+KM+ PD F+A+L AC + G V FF+ M+
Sbjct: 316 WNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQ 375
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y +EP++KH+ +V++L R G + +A FI+ M P+ VIW L ACR H + ++A
Sbjct: 376 HKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 435
Query: 485 KIA 487
K A
Sbjct: 436 KHA 438
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 135/336 (40%), Gaps = 68/336 (20%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I++ + + A +FD +++ +NV+I G + F M R+ +P+
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T + + A L +G+ LH L+DM+ +R F
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS---------------SLSDMF-----SRNGF---- 280
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
V+L N LI+ +K G ++ A E+F M K+V++W S++ G
Sbjct: 281 ---------PVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGG--------- 322
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ +G +++ MF +ML VR ++ T V+ L AC+
Sbjct: 323 ----------------------LALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSH 360
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTW 365
G ++ G N + + + ++ I +VDM + G ++ A K E + + W
Sbjct: 361 GGMVDKGREFFNLMQ-HKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
++ +HG E A ++++ + + G L
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVL 455
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 259/484 (53%), Gaps = 22/484 (4%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--- 72
T K SHK ++ T + +H L+Q HA I+ S I L+ S
Sbjct: 25 TETSKLSHKAILHLLNTQCTTSLH------HLKQAHALILRTGHLQDSYIAGSLVKSYAN 78
Query: 73 --ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
+ + S + +L +FD N+ ++N +I+ EN+ I + M+ RPN+
Sbjct: 79 VSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKY 138
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
TYP V K+ + +++ G +H +VK G+ D + MY G+ A ++ D+
Sbjct: 139 TYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD- 197
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLIDGFMRKGDLKKA 249
K + WN +I+G + G + A ELF MP ++ +++W ++I GF R G ++ A
Sbjct: 198 --KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 255
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
E F++M E+ +SW+AMI+G+ Q G +AL +F QM +R F + S LSACA +
Sbjct: 256 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 315
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GAL+ G +H Y N L G +GT+LVDMYAKCG I+ A VF + K++ +W AMI
Sbjct: 316 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 375
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GLA+HGR E AI F KM P+ F+ +L AC + G V+ L F+SMR +Y +
Sbjct: 376 GGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGV 432
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT----KIAK 485
EP ++H+ +V+LL R G + +A ++ +P P +WGAL ACR H + ++ K
Sbjct: 433 EPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGK 492
Query: 486 IALQ 489
I L+
Sbjct: 493 ILLE 496
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 260/460 (56%), Gaps = 7/460 (1%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSI 85
N E H ++L S + ++QI A I L + ++ +L+ + +L S+ YA +
Sbjct: 2 NSRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRL 61
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSL 144
F ++ ++N LIRGL+++ + + FV M R SV P+ ++ F+ K+ A+
Sbjct: 62 FLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRA 121
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L+ G LHCL V G++ FV L MY + A KVFDE E N ++ WN
Sbjct: 122 LTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPN----IVAWNA 177
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ C + ++ A ++F MP +N+ SW ++ G+ + G+L+ A E+F +MP K VSW
Sbjct: 178 IVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSW 237
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+ MI GF+ NG A A F ++ G+R N+ ++ LSACA+ GA E G +H ++
Sbjct: 238 STMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEK 297
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ F ++ AL+D Y+KCGN++ A LVF + ++WTAMI G+A+HG E+AI+
Sbjct: 298 SGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRL 357
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F +M S +PD F++IL AC ++G V L ++F M Y IEP ++H+ +V+L
Sbjct: 358 FNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYG 417
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
R G++ +A +F+ +MP +P+ ++W L AC H + +A
Sbjct: 418 RAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLA 457
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 4/190 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N ++ T ++S + + + R +H + + LI + S ++D A +F
Sbjct: 268 NEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVF 327
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D+ ++ + +I G+A + + + I F M +++P+ +T+ + + + L+
Sbjct: 328 DNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVD 387
Query: 147 LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LG +V + G+E + D+Y + GK + A+ + P S + ++W L
Sbjct: 388 LGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP---ISPNDIVWRTL 444
Query: 206 INGCSKIGYL 215
+ CS G L
Sbjct: 445 LGACSIHGNL 454
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 247/460 (53%), Gaps = 36/460 (7%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E ++ + + +L++IHA I+ +L S+ + T+++ +DYA IF
Sbjct: 7 ENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGR 149
N+ +N +IR N I+ F ML S P++ T+PFV KS A L LG+
Sbjct: 67 NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + K G + A L DMY + G G
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDMYTKCGDMSG--------------------------- 159
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
A +++ M +++ SW SLI G +R G +K A E+F++MP + +VSWT MIN
Sbjct: 160 --------AYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMIN 211
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+++ G AL +F +M G+ ++ +V+S L ACA++GALE G +H Y + F
Sbjct: 212 GYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLK 271
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ ALV+MYAKCG I+ A +F + EKD+++W+ MI GLA HG+ AI+ F+ M
Sbjct: 272 NAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQ 331
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+G P+G F+ +L+AC ++G L +FD MR DY +EP ++H+ +V+LL R GQV
Sbjct: 332 KAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQV 391
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
++AL+ I KMP PD W +L +CR H + +IA +A++
Sbjct: 392 EQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAME 431
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 274/507 (54%), Gaps = 42/507 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI S+ QL+QIHA++++ L S + T+LI ++S I +A +FD
Sbjct: 20 SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ + LS L +GR
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G + D FV+ L +Y + + A VF+ P ++ ++ W +++
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
++ G +A+E+F M K +V WV+L+ + F DLK
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A +A+ MF +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE ++ Y+ +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
LVF T ++D++ W+AMI G +HGR +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF+ M D+ I P +H+ V++LL R G +D+A I MP P +WGA
Sbjct: 438 GMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L AC+ H+ ++ + A Q S++ S
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPS 523
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 192/434 (44%), Gaps = 48/434 (11%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N A+ +N++ + ++ T H++ + + R +HAQ+ A +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 67 TQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
LI+ + + + A ++F+ + + + ++ A+N + F M ++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+P+ + V + L L GR +H +VK G+E + + + L MY + G+ A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVS-- 235
+FD K KS +++LWN +I+G +K GY R+A+++F M K+V S +S
Sbjct: 278 ILFD----KMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333
Query: 236 ------------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
LID F + G ++ A +F++ ++ VV W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI G+ +G A +A++++ M GV ND T + L AC G + G N ++ +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADH 453
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ ++D+ + G+++ A V + + W A++ H R+ + +Y
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH-RHVELGEY 512
Query: 385 FKKMMYSGTEPDGT 398
+ ++S +P T
Sbjct: 513 AAQQLFS-IDPSNT 525
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 245/423 (57%), Gaps = 10/423 (2%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS----VR 126
S+ ++ +I +A +FD + ++N LIRG A + + +S + MLR VR
Sbjct: 20 SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVR 79
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P++LT+PFV ++ ++ G +H +VK+G E DAFV+ L M+ G A +
Sbjct: 80 PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 139
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD E + W+ +I GC++ G + A +LF P K++ SW +I + ++GD+
Sbjct: 140 FD----GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A ELF+Q+PE+ VVSW MI+G+ + G AL +F QM G + + T++S LSAC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 307 AKVGALEAGVRVHNYIS--CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A G L+ G R+H+ +S + G +G AL+DMYAKCG++++A VF ++KD+ T
Sbjct: 256 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVST 315
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +++ GLA+HG ++I F+KM+ PD F+A+L AC + G V FF+ M+
Sbjct: 316 WNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQ 375
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y +EP++KH+ +V++L R G + +A FI+ M P+ VIW L ACR H + ++A
Sbjct: 376 HKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 435
Query: 485 KIA 487
K A
Sbjct: 436 KHA 438
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 135/336 (40%), Gaps = 68/336 (20%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I++ + + A +FD +++ +NV+I G + F M R+ +P+
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T + + A L +G+ LH L+DM+ +R F
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS---------------SLSDMF-----SRNGF---- 280
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
V+L N LI+ +K G ++ A E+F M K+V++W S++ G
Sbjct: 281 ---------PVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGG--------- 322
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ +G +++ MF +ML VR ++ T V+ L AC+
Sbjct: 323 ----------------------LALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSH 360
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTW 365
G ++ G N + + + ++ I +VDM + G ++ A K E + + W
Sbjct: 361 GGMVDKGREFFNLMQ-HKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
++ +HG E A ++++ + + G L
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVL 455
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 258/466 (55%), Gaps = 39/466 (8%)
Query: 26 SNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYAL 83
S +++ + LI + ST ++L+QIHA +I L + + +++++ S ++YA
Sbjct: 19 SGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAY 78
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVAS 141
+F KN ++N +IRG + +S + IS F+ ML SV+P RLTYP V K+
Sbjct: 79 LVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGR 138
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L GR LH +++K G+E D+F+R + MYV G A+++F
Sbjct: 139 LGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF-------------- 184
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
IG+ +V +W S+I GF + G + +A LF++MP++
Sbjct: 185 -------LGMIGF--------------DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNG 223
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW +MI+GF +NG + AL MF +M + V+ + FT+VS L+ACA +GA E G +H Y
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N F L + TAL+DMY KCG IE VF +K L W +MI GLA +G E+A
Sbjct: 284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERA 343
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F ++ SG EPD F+ +LTAC +SG+V A FF M+ Y IEPS+KH+T++VN
Sbjct: 344 MDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVN 403
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L G +++A I MP D VIW +L ACR + ++AK A
Sbjct: 404 VLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRA 449
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 128/326 (39%), Gaps = 68/326 (20%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A ++FD +N +N +I G N F+ + F M V+P+ T + +
Sbjct: 208 IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNA 267
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L GR +H IV++ E ++ V L DMY + G VF+ P+K S
Sbjct: 268 CAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLS-- 325
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
WN +I G + G+ +A++LF + + + S++ ++ G++ +A E F
Sbjct: 326 --CWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFR 383
Query: 255 QMPEKGVVS-----WTAMIN-----GFSQNGEA-------EKALAMFFQMLDAGVRANDF 297
M EK ++ +T M+N G + EA E+ ++ +L A + +
Sbjct: 384 LMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNV 443
Query: 298 TVVSALSACAK-----------------------------------------VG--ALEA 314
+ + C K VG ++E
Sbjct: 444 EMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDM 340
VH +ISC K A +L+D+
Sbjct: 504 DFEVHEFISCGGTHPKSAEIYSLLDI 529
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/514 (33%), Positives = 277/514 (53%), Gaps = 54/514 (10%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
T + S + + ++SL+ STK L+QIH Q+I++ + + + + I
Sbjct: 16 TKALAKSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDL--- 72
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN-SHFQSCISHFVFMLRLSVRPNRLTYPF 134
K + A +F N + FN++IRGL F I + M +RPN TYPF
Sbjct: 73 -KDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPF 131
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V + A+L +L+ G+ H ++KSG+ D VR L MY + G+ A +VFDE EK+
Sbjct: 132 VFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKD 191
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK----------------NVAS 232
++ WN +I+G S++GY AV LFG M P + + S
Sbjct: 192 ----LVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGS 247
Query: 233 WV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
W+ +LI + + GDL A +F++M +K VV+W AMI G++QNG
Sbjct: 248 WIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNG 307
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-- 333
+++A+ +F M ++GV + T+V LSACA +GAL+ G + Y S + GL+ I
Sbjct: 308 VSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYAS--ERGLQNDIYV 365
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG- 392
TAL+DMYAKCG+++ A VF + +K+ ++W AMI LA HGR ++++ FK+M G
Sbjct: 366 STALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGG 425
Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
P+ F+ +L+AC ++G V FD M + + P ++HH+ +V+LL+R G V +
Sbjct: 426 AVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHE 485
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A +FI KMPE PD V+ GAL AC+ ++ +++
Sbjct: 486 AWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSE 519
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 259/484 (53%), Gaps = 22/484 (4%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--- 72
T K SHK ++ T + +H L+Q HA I+ S I L+ S
Sbjct: 26 TETSKLSHKAILHLLNTQCTTSLH------HLKQAHALILRTGHLQDSYIAGSLVKSYAN 79
Query: 73 --ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
+ + S + +L +FD N+ ++N +I+ EN+ I + M+ RPN+
Sbjct: 80 VSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKY 139
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
TYP V K+ + +++ G +H +VK G+ D + MY G+ A ++ D+
Sbjct: 140 TYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD- 198
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLIDGFMRKGDLKKA 249
K + WN +I+G + G + A ELF MP ++ +++W ++I GF R G ++ A
Sbjct: 199 --KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 256
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
E F++M E+ +SW+AMI+G+ Q G +AL +F QM +R F + S LSACA +
Sbjct: 257 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 316
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GAL+ G +H Y N L G +GT+LVDMYAKCG I+ A VF + K++ +W AMI
Sbjct: 317 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 376
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GLA+HGR E AI F KM P+ F+ +L AC + G V+ L F+SMR +Y +
Sbjct: 377 GGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGV 433
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT----KIAK 485
EP ++H+ +V+LL R G + +A ++ +P P +WGAL ACR H + ++ K
Sbjct: 434 EPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGK 493
Query: 486 IALQ 489
I L+
Sbjct: 494 ILLE 497
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/544 (31%), Positives = 274/544 (50%), Gaps = 70/544 (12%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
A T + +H PS + +T +SLI + S QL+QIH+Q I L ++ + Q+I+
Sbjct: 4 ATTLSPPPTHLPS--LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC 61
Query: 74 SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
H+ ++YA +FD N ++N +I+G + S +S + ML V P+ T
Sbjct: 62 CKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYT 121
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR---VHLADMYVQLGKTRGAF---- 184
YPF+ K + + GR LH IVK G + FV+ +HL + ++ RG F
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181
Query: 185 ------------------------KVFDET------PEKNKSESVL-------------- 200
K+FDE P SVL
Sbjct: 182 KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKR 241
Query: 201 ---------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
L N LI+ + G + A+ +F M ++V SW +++ GF G
Sbjct: 242 VHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQ 301
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+ A F++MPE+ VSWTAMI+G+ Q ++ L++F +M A ++ ++FT+VS L+A
Sbjct: 302 VGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 361
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA +GALE G + YI N+ + +G AL+DMY CGN+E A +F +D ++W
Sbjct: 362 CAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 421
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
TA+I+GLAI+G E+A+ F +M+ + PD + +L AC +SG V FF M
Sbjct: 422 TAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTT 481
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ IEP+V H+ +V+LL R G + +A I MP P+ ++WG+L ACR H+D ++A+
Sbjct: 482 QHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAE 541
Query: 486 IALQ 489
+A Q
Sbjct: 542 MAAQ 545
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/512 (32%), Positives = 270/512 (52%), Gaps = 39/512 (7%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
+H ++ + QIHAQ++ NL + +LI++ SL + + A+++F+H N+H++
Sbjct: 28 LHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLY 87
Query: 98 NVLIRGLAEN-SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
N +IR A N SH + F M + + P+ TYPF+ K+ S L L R +H +
Sbjct: 88 NSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVE 147
Query: 157 KSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
K G D FV L D Y + G GA +F E++ V+ WN +I G + G
Sbjct: 148 KFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERD----VVTWNSMIGGLVRCGE 203
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
L A +LF MP++++ SW +++DG+ + G++ +A ELFE+MP++ +VSW+ M+ G+S+
Sbjct: 204 LEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKG 263
Query: 275 GE--------------------------AEK-----ALAMFFQMLDAGVRANDFTVVSAL 303
G+ AEK A ++ +M +AG+R +D ++S L
Sbjct: 264 GDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISIL 323
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDL 362
+ACA+ G L G R+H + F + A +DMYAKCG ++AA VF G +KD+
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDV 383
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W +MI G A+HG E+A++ F +M+ G EPD F+ +L AC ++G V +F S
Sbjct: 384 VSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYS 443
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M Y I P V+H+ +++LL R G + +A + MP P+ +I G L ACR H D
Sbjct: 444 MEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVD 503
Query: 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
A+ + + + P S Q GD
Sbjct: 504 FARAVCEQLFKVEPTDPGNYSLLSNIYAQAGD 535
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/512 (33%), Positives = 270/512 (52%), Gaps = 39/512 (7%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
+H + + QIHAQ++ NL + +LI++ SL + + A+++F+H N+H++
Sbjct: 28 LHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLY 87
Query: 98 NVLIRGLAENSHFQSC-ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
N +IR A NS +S + F M + + P+ TYPF+ K+ + S L L R +H +
Sbjct: 88 NSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVE 147
Query: 157 KSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
K G D FV L D Y + G GA +F E++ V+ WN +I G + G
Sbjct: 148 KIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERD----VVTWNSMIGGLVRCGE 203
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
L+ A +LF MP +++ SW +++DG+ + G++ A ELFE+MP + +VSW+ M+ G+S+
Sbjct: 204 LQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKG 263
Query: 275 GE--------------------------AEKALA-----MFFQMLDAGVRANDFTVVSAL 303
G+ AEK LA ++ +M +AG+R +D ++S L
Sbjct: 264 GDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSIL 323
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDL 362
+ACA+ G L G R+H + F + A +DMYAKCG ++AA VF G +KD+
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDV 383
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W +MI G A+HG E+A++ F M+ G EPD F+ +L AC ++G V +F S
Sbjct: 384 VSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYS 443
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M Y I P V+H+ +++LL R G + +A + MP P+ +I G L ACR H D
Sbjct: 444 MEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVD 503
Query: 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
+A+ + L S P S Q GD
Sbjct: 504 LARAVCEQLFKLEPSDPGNYSLLSNIYAQAGD 535
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 277/497 (55%), Gaps = 43/497 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHF 89
++SL+ S ++ Q+ QIHAQ+I NL FA+SR+ ++S +++YA +F
Sbjct: 14 LLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTL---NVNYAELVFAQI 70
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
N I N +++ E+S + + + M R + + TYPFV K+ ++ L G
Sbjct: 71 HQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGG 130
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---RGAF---------------------- 184
+ VK G D FV L MY + G+T R F
Sbjct: 131 LVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCG 190
Query: 185 ------KVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLI 237
+FDE PE++ V+ W+++I+G K +G + +A F MP +++ SW S+I
Sbjct: 191 EMENAQNMFDEMPERD----VVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMI 246
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
DG+ + G+++ A E+F++M +K V+SW+ MI+G++Q+ ++++AL +F QML G++ +
Sbjct: 247 DGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRV 306
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+VV A+SAC+++GAL+ G +H Y+ N L + TALVDMY KCG+ + A +F
Sbjct: 307 SVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSM 366
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+++++W MI GL ++G ++A++ F +M D +FL +L AC ++ V L
Sbjct: 367 PERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGL 426
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ F+ M+ Y +EP ++H+ +V+LL R GQ+D+ N I MP P+ +WG+L ACR
Sbjct: 427 HIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRI 486
Query: 478 HKDTKIAKIALQSSCSL 494
H++ +A+I ++ L
Sbjct: 487 HQNVTLAEIVVERLAEL 503
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 256/478 (53%), Gaps = 49/478 (10%)
Query: 32 THI-ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
HI I L NS K L+ +HA ++ L S + +++ + + +Y+ IF
Sbjct: 10 AHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTK 69
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ +FN +I GL N FQ I + M + + P+ T+PF+ K+ A L LG
Sbjct: 70 EPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIK 129
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH L+VK+G E DAFV L +Y
Sbjct: 130 LHGLVVKAGCESDAFVNTSLVSLY-----------------------------------G 154
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-------MPEKGVVS 263
K G++ A ++F +P+KNVA+W ++I G++ G ++A ++F + M EK +VS
Sbjct: 155 KCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVS 214
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W++MI G++ NG ++AL +FF+ML+ G R + + +V L ACA++GALE G N +
Sbjct: 215 WSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMD 274
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N+F +GTAL+DMYAKCG +++A VF ++KD++ W A I GLA+ G + A
Sbjct: 275 RNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFG 334
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M SG EPDG F+ +L AC ++G V +F+SM + + P ++H+ +V+LL
Sbjct: 335 LFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLL 394
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK------IALQSSCSLN 495
R G +D+A + MP + ++WGAL CR H+DT++ + IAL+ S S N
Sbjct: 395 GRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGN 452
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/474 (32%), Positives = 266/474 (56%), Gaps = 21/474 (4%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T + I +L+ + +T L Q+HA+II L + +Q ++ + + Y S+F+
Sbjct: 24 TTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGV 83
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ + ++N I+G +EN +S F+ M R P++ TYP + K+ + + + G
Sbjct: 84 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
H V+ GV D FV L D+Y + G+ A KVFDE E+N V+ W +I G
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN----VVSWTAMIAGY 199
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ L +A +LF MP+KN SW ++I G+++ GDL+ A ++F++MP + VVS+T MI+
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMID 259
Query: 270 GFSQNGEAEKAL---------------AMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
G++++G+ A A+ F++ + V+ ++F +VS +SAC+++G+LE
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLE 319
Query: 314 AGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
V +Y+ + + A + AL+DM AKCG+++ A+ +F E ++DL+++ +M+ GL
Sbjct: 320 LAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGL 379
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
+IHG QA+ F +M+ G PD F ILTAC +G V +F+SM+ DY I PS
Sbjct: 380 SIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPS 439
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
H+ +V+LL R G++ +A + MP P WGAL AC+ H D ++ ++
Sbjct: 440 PDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 493
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 184/553 (33%), Positives = 280/553 (50%), Gaps = 72/553 (13%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHN-LFASSRITTQLISSAS 74
+ SS P + E + L+ S + +QIHA II LHN LFA S++ S+ S
Sbjct: 17 LPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIE--FSAVS 74
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
I YA+S+F+ NL I+N +IRGL+ + + FV M+ V PN T+PF
Sbjct: 75 RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP--- 191
+ KS A L+ G+ +H ++K G D F+ L +MY Q G+ A VFD++
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
Query: 192 ------------------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
++ + V+ WN +I G +++G ++A+ LF M K
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254
Query: 228 KNVA--------------------------SWV-------------SLIDGFMRKGDLKK 248
NV SW+ +LID + + GDL+
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ELF+ M E+ V+SW MI G++ ++ALA+F +ML +GV + T +S L +CA
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GA++ G +H YI+ N + ++ T+L+D+YAKCGNI AA VF K K L +W AM
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA+HG+ ++A + F KM G EP+ F+ IL+AC ++G V L FF SM DY
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYK 494
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P +H+ +++LL R G ++A + + M PD IWG+L ACR H ++ ++
Sbjct: 495 ISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVA 554
Query: 489 QSSCSLNLSIPQA 501
+ L P A
Sbjct: 555 ERLFELEPDNPGA 567
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 16/317 (5%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+ +++ ++ P N T ++S SN+ + + I L ++ ++
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI S + A +FD +++ +NV+I G ++ ++ F ML V P
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+T+ + S A L + LG+ +H I K+ + L D+Y + G A +VF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRK 243
D K +S+ WN +I G + G KA ELF M + N ++V ++
Sbjct: 421 DGM----KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHA 476
Query: 244 GDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G + + F M + +S + MI+ + G E+A ++ M V+ +
Sbjct: 477 GLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNM---EVKPDGAI 533
Query: 299 VVSALSACAKVGALEAG 315
S L AC G +E G
Sbjct: 534 WGSLLGACRDHGRVELG 550
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 275/521 (52%), Gaps = 39/521 (7%)
Query: 25 PSNN-ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
PS + E H+ SL +R++HAQ++ L + R +L+S+ +L + + +
Sbjct: 345 PSQRRLVEQHLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSR 404
Query: 84 SIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
+FD + F N ++R A + ++ F M R + TY F+ K++++
Sbjct: 405 RVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSA 460
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ + R +H +VK G D FV L D Y + G A KVFDE PE++ V+
Sbjct: 461 AGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERD----VVS 515
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN + + G L A +LF MP+K+ SW +++DG+ + G+++ A ELF++MPE+ V
Sbjct: 516 WNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNV 575
Query: 262 VSWTAMINGFSQNGEAEKALAMF------------FQMLDAGVRANDFTVVSALSACAKV 309
VSW+ M++G+ + G+ E A +F M +A V + VVS L+ACA+
Sbjct: 576 VSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAES 635
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAM 368
G+L G R+H Y+ + G + AL+DM+ KCG + A VF ET +KD ++W ++
Sbjct: 636 GSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSI 695
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G A+HG ++A++ F +M G PD + +L+AC + G V +F +M DY
Sbjct: 696 IGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYG 755
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA- 487
I P ++H+ +++LL R G + +A++ I MP P+ VIWG+L ACR HK+ + A+IA
Sbjct: 756 IMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAV 815
Query: 488 -----LQSSCSLNLSI--------PQAMSYCQTFMQQKGDG 515
LQ S + N ++ Q + MQ KG G
Sbjct: 816 NELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTG 856
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 253/477 (53%), Gaps = 49/477 (10%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS E I+ + + + + L + H + L SS + TQ++ + H +A
Sbjct: 4 PSLWQLEDAAIARLRACATFRDLLRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAAR 63
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP---------NRLTYPFV 135
+F H NLH+ N +I+ A+N + + +V MLR P +R TYPF+
Sbjct: 64 VFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFL 123
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ L+ LGR +H + +SG E A V+ L +MY
Sbjct: 124 LKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMY--------------------- 162
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ G L A ++F M +K+ SW +LI R G ++KA ELF
Sbjct: 163 --------------TRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHS 208
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP+K VVSWTA+++G++ G+ A+ +F QM G +D ++V+ L ACA++GALE G
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELG 268
Query: 316 VRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
++ Y CN G+ G I AL++MYAKCG IE A +F EKD+++W+ I GLA
Sbjct: 269 RWIYAY--CNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLA 326
Query: 374 IHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
HGR +A++ F+ M G P+G F+ +L+AC ++G + L +FD M+ +Y +EPS
Sbjct: 327 AHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPS 386
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
V+H+ VV+LL R G++ +AL+ I MP PD IWG+L ACR+H D A +A +
Sbjct: 387 VEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAE 443
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 248/418 (59%), Gaps = 5/418 (1%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
SS ++ ++ YA +F H T + ++N +IRG A++ + IS + M VRP++
Sbjct: 20 SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKF 79
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+PFV K+ L + +G G+H + + G E + FVR L + G A +FD +
Sbjct: 80 TFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGS 139
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
+++ V+ W+ L G ++ G L A +LF MP K++ SW +I G+ ++G+++ A
Sbjct: 140 AKRD----VVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESAR 195
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+LF+++P++ VV+W AMI G+ G ++AL MF +M G ++ T++S LSAC +G
Sbjct: 196 KLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLG 255
Query: 311 ALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
L+AG R+H IS F L +G AL+DMYAKCG+I A VF +EKD+ TW +++
Sbjct: 256 DLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVL 315
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GLA HG E++I F +M PD F+ +L AC ++G+V+ +FD MR +Y I
Sbjct: 316 GGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNI 375
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
EP+++H+ +V+LL R G +++A +FI+ M P+ ++W L ACR H + ++ + A
Sbjct: 376 EPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRA 433
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 273/507 (53%), Gaps = 42/507 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI SS QLRQIHA++++ L S + T+LI ++S + I +A +FD
Sbjct: 20 SDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ LS L +GR
Sbjct: 80 PRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G E D FV+ L +Y + + A VF+ P + +++ W +++
Sbjct: 140 FVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPER--TIVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLK------------------ 247
++ G +A+E+F M K +V + VS+++ F DL+
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A+ A+ +F +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE + Y+S +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF T ++D++ W+AMI G +HG+ +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF+ M D+ I P +H+ +++LL R G +D+A I MP P +WGA
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L AC+ H+ ++ K A Q S++ S
Sbjct: 497 LLSACKKHRHVELGKYAAQQLFSIDPS 523
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 256/449 (57%), Gaps = 8/449 (1%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+ L QIH I + S +LI + S+ ++ YA + F + +FN L+R
Sbjct: 186 RALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVR 245
Query: 103 GLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
G +E+ + ++ FV M+R + P+ ++ FV K+ A+ L G +HC +K G++
Sbjct: 246 GYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLD 305
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
FV L MY + G A KVFDE P+ N ++ WN ++ C + + A E+
Sbjct: 306 SHLFVATTLIGMYGECGCVGFARKVFDEMPQPN----LVAWNAVVTACFRGNDVSGAREI 361
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI GFS NG ++
Sbjct: 362 FDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESF 421
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+ F ++L A +R N+ ++ LSAC++ GA E G +H ++ + + ++ AL+DMY
Sbjct: 422 SYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMY 481
Query: 342 AKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
++CGN+ A LVF G +++ +++WT+MI GLA+HG E+AI+ F +M SG PD F
Sbjct: 482 SRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISF 541
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+++L AC ++G +K +F M+ Y IEP+V+H+ +V+L R G++ KA +FI +MP
Sbjct: 542 ISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMP 601
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++W L AC +H + ++A+ Q
Sbjct: 602 IPPTAIVWRTLLGACSSHGNIELAEQVKQ 630
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/430 (36%), Positives = 235/430 (54%), Gaps = 28/430 (6%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
S K + + E IISL++S + L QI + II H L + IT ++I+S +L K + +
Sbjct: 57 SPKLPHRLLEEKIISLLYSCKTLNHLHQIQSHIINHGLQFNDYITPKIITSFALFKRMRH 116
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD N+ +N +++G + N + I F M+ + + PN ++P V KS
Sbjct: 117 AHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVK 176
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
++ G LHC ++KSG + FV L D+Y A++VF E E+N
Sbjct: 177 INAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSM 236
Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+LWN++I+G IG L +A ELF MP K+V SW
Sbjct: 237 IKGFILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWN 296
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
+L++G+ GD++ LFE+MPE+ V SW +I G++ +G + L+ F +ML D V
Sbjct: 297 TLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVV 356
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
ND T+V+ LSACA++GAL+ G VH Y N + IG AL+DMYAKCGN+E A +V
Sbjct: 357 PNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVV 416
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F +KDL++W +I GLA+HGR A+ F +M +G +PDG FL +L AC + G V
Sbjct: 417 FKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLV 476
Query: 414 KLALNFFDSM 423
++F SM
Sbjct: 477 DDGFSYFQSM 486
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 267/517 (51%), Gaps = 54/517 (10%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
A+AP++ + E +++ + + S + L ++HA + +L SS + TQ++
Sbjct: 2 ALAPSSATRQ--------VEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVH 53
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP---- 127
+ H + +A +F NLH+ N +I+ A+N I+ ++ MLR P
Sbjct: 54 LCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISC 113
Query: 128 ---NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+R TYPF+ K+ L L LG+ +H +V+SG E +A V+ L +MY + G A
Sbjct: 114 TGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLAR 173
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
KVFD E++ V+ WN +I+ +++G +RKA +F MP K V SW +L+ G+ G
Sbjct: 174 KVFDGMQERD----VVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAG 229
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D A E F M QM G +D ++V+ L
Sbjct: 230 DFSGAVEAFRLM-----------------------------QM--EGFEPDDVSIVAVLP 258
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA++GALE G ++ Y + + + + ALV+MYAKCG I+ A +F EKD+++
Sbjct: 259 ACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVIS 318
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSM 423
W+ M+ GLA HGR ++A+Q F +M GT +P+G F+ +L+AC ++G + L++FD M
Sbjct: 319 WSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRM 378
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
Y IEP V+H+ +V+LL R GQ+ + L+ I+ MP D IWG++ ACR+H D
Sbjct: 379 NDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDT 438
Query: 484 AKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
A +A + +L P+ + R W E
Sbjct: 439 AVLAAERLVALE---PEDVGNLVMLANVYAAARRWSE 472
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 255/464 (54%), Gaps = 40/464 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + ++ + + +L++IHA I+ +L SS + T+++ + H +YA +F
Sbjct: 14 EDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVA 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-----VRPNRLTYPFVSKSVASLSLL 145
N ++N +IR N + I+ + ML S + P++ T+PFV KS A L
Sbjct: 74 DPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCY 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LG+ +H + K G + + V L +MYV+ A KVF+E
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEE---------------- 177
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
M +++ SW +LI G +R G +++A +FE+M +K + SWT
Sbjct: 178 -------------------MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWT 218
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
A+++G+++ G AL F +M G+ ++ ++VS L ACA++GALE G +H Y
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKA 278
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F + AL++MYAKCG+I+ +F + E+D+++W+ MI GLA HGR +AI+ F
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELF 338
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
++M + EP+ F+ +L+AC ++G + L +F+SM+ DY IEP V+H+ +VNLL
Sbjct: 339 QEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 398
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
G++D+AL I KMP PD IWG+L +CR+H + +IA IA++
Sbjct: 399 SGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAME 442
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 8/461 (1%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
H +SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 7 HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ FV K+V + L G
Sbjct: 67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+HC +K G+E FV L MY G A KVFDE + N ++ WN +I C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ + A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G + NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ KA +FI +MP P ++W L AC +H + ++A+ Q
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 256/487 (52%), Gaps = 43/487 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
N QL+ IHA+++ +L + + ++ A S +Y+ +F N+ ++N +I
Sbjct: 27 NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMI 86
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
RGL F I + M PN T PFV K+ A + LG +H L+VK+G +
Sbjct: 87 RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+D FV+ L +YV+ A KVFD+ P+KN V+ W +I G G+ R+A+
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN----VVSWTAIITGYISSGHFREAIGA 202
Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
F G+ P +NV SL+D +++
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G+L++A +F MPEK +VSW+ MI G++ NG ++AL +FFQM ++ + +T+V
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LSACA +GAL+ G+ + + N+F +GTAL+DMY+KCG++ A +F K+KD
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+ W AM+ GL+++G + F + G PD F+ +L C + G V FF++
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN 442
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M+ + + PS++H+ +V+LL R G +++A IN MP P+ V+WGAL C+ HKDT
Sbjct: 443 MKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTH 502
Query: 483 IAKIALQ 489
+A+ L+
Sbjct: 503 LAEQVLK 509
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 51/375 (13%)
Query: 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
H++F + T L+S + D AL +FD KN+ + +I G + HF+ I
Sbjct: 147 HDVF----VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
F +L + ++P+ + V + A L + G + I SG+ + FV L DMYV+
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---- 232
G A +F PEK+ ++ W+ +I G + G ++A++LF M +N+
Sbjct: 263 CGNLERANLIFSAMPEKD----IVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318
Query: 233 ------------------WVS-----------------LIDGFMRKGDLKKAGELFEQMP 257
W S LID + + G + +A E+F M
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+K V W AM+ G S NG A+ ++F + G+R ++ T + L C G + G +
Sbjct: 379 KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438
Query: 318 VHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAI 374
N + F L +I +VD+ + G + EA L+ + + + W A++ G +
Sbjct: 439 FFNNMK-RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKL 497
Query: 375 HGRYEQAIQYFKKMM 389
H A Q KK++
Sbjct: 498 HKDTHLAEQVLKKLI 512
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 159/497 (31%), Positives = 276/497 (55%), Gaps = 43/497 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHF 89
++SL+ S ++ Q+ QIHAQ+I NL FA+SR+ ++S +++YA +F
Sbjct: 14 LLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTL---NVNYAELVFAQI 70
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
N I N +++ E+S + + + M + + + TYPFV K+ ++ L G
Sbjct: 71 HQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGG 130
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---RGAF---------------------- 184
+ VK G D FV L MY + G+T R F
Sbjct: 131 LVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCG 190
Query: 185 ------KVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLI 237
+FDE PE++ V+ W+++I+G K +G + +A F MP +++ SW S+I
Sbjct: 191 EMENAQNMFDEMPERD----VVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMI 246
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
DG+ + G+++ A E+F++M +K V+SW+ MI+G++ + ++++AL +F QML G++ +
Sbjct: 247 DGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRV 306
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+VV A+SAC+++GAL+ G +H Y+ N L + TALVDMY KCG+ + A +F
Sbjct: 307 SVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSM 366
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+++++W MI GL ++G ++A++ F +M D +FL +L AC ++ V L
Sbjct: 367 PERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGL 426
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ F+ M+ Y +EP ++H+ +V+LL R GQ+D+ N I MP P+ +WG+L ACR
Sbjct: 427 HIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRI 486
Query: 478 HKDTKIAKIALQSSCSL 494
H++ +A+I ++ L
Sbjct: 487 HQNVTLAEIVVERLAEL 503
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 264/485 (54%), Gaps = 37/485 (7%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
I + N H +ET I L+ + NS +LRQ+HAQII N S T++
Sbjct: 10 IPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLV 69
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
+ S YA IF+ + F N ++ LAE I F + + V P+
Sbjct: 70 CAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF 129
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T V ++ +L LS GR LH ++ K G +++Y+Q
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFR---------SNLYLQ-------------- 166
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
N++++ + G + +A LF MP+++V +W +I +++GD + A
Sbjct: 167 ------------NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+LF +MPE+ V SWT+MI G+ Q G+A++A+ +F +M +AGV+ N+ TVV+ L+ACA +G
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
AL+ G+R+H Y + + F I L+DMY KCG +E A VF E +E+ +++W+AMI
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GLA+HGR E+A++ F M G EP+G F+ +L AC + G + FF SM DY I
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +V+LLSR G + +A FI MP P+ V+WGAL ACR HK+ ++A+ A++
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454
Query: 491 SCSLN 495
L+
Sbjct: 455 LLELD 459
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 159/410 (38%), Gaps = 55/410 (13%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
SN + I+ L S + R + ++ ++ + + QLI + D +
Sbjct: 161 SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD----L 216
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F +N+ + +I G + + I F M V+ N +T V + A L L
Sbjct: 217 FSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 276
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LG +H + G + + + L DMYV+ G A KVF+E E+ +V+ W+ +
Sbjct: 277 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER----TVVSWSAM 332
Query: 206 INGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKG 260
I G + G +A+ LF M + N +++ L+ G + + F M + G
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392
Query: 261 VVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
++ + M++ S+ G +A M ++ N + L AC
Sbjct: 393 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNM---PMKPNGVVWGALLGAC---------- 439
Query: 317 RVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLT--- 364
RVH + + +K + L ++YA+ G E + V K++ +
Sbjct: 440 RVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPG 499
Query: 365 WTAM---------IWGLAIHGRYEQAIQ----YFKKMMYSGTEPDGTVFL 401
W+++ + G H EQ Q ++M G P+ +V L
Sbjct: 500 WSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 253/473 (53%), Gaps = 21/473 (4%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTP 91
++S + +S K++ Q I LF + +++IS SL S+ YA +IF+ T
Sbjct: 9 LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTM 68
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA----------- 140
N + N +IR A++ I + FM R ++ + YPF K+ A
Sbjct: 69 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIK 128
Query: 141 --SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L + G +HC + + G++ D F++ L +Y Q G A +VFDE EK +
Sbjct: 129 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEK----T 184
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WNV+I+ +I A L G MP KNV SW LI ++R G ++ A +F++MPE
Sbjct: 185 ITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPE 244
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VSW +MI G+ Q + +ALA+F +M A V A D T++S L ACA+ GALE G ++
Sbjct: 245 RDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKI 304
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + ++ ++G + ALVDMYAKCG++ A VF E K K + W AMI LA+HG
Sbjct: 305 HLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYC 364
Query: 379 EQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E+A++ F M S G P+ F+ +L AC + G V FF+ M +Y I P +KH+
Sbjct: 365 EEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHY 424
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V+LLSR G + +A + I MP + V+W L ACR H +A+ + Q
Sbjct: 425 GCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQ 477
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 255/487 (52%), Gaps = 43/487 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
N QL+ IHA+++ +L + + ++ A S +Y+ +F N+ ++N +I
Sbjct: 27 NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMI 86
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
RGL F I + M PN T PFV K+ A + LG +H L+VK+G +
Sbjct: 87 RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+D FV+ L +YV+ A KVFD+ P+KN V+ W +I G G+ R+A+
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN----VVSWTAIITGYISSGHFREAIGA 202
Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
F G+ P +NV SL+D +++
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G+L++A +F MPEK +VSW+ MI G++ NG ++AL +FFQM ++ + +T+V
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LSACA +GAL+ G+ + + N+F +GTAL+DMY+KCG++ A +F K KD
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+ W AM+ GL+++G + F + G PD F+ +L C + G V FF++
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN 442
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M+ + + PS++H+ +V+LL R G +++A IN MP P+ V+WGAL C+ HKDT
Sbjct: 443 MKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTH 502
Query: 483 IAKIALQ 489
+A+ L+
Sbjct: 503 LAEQVLK 509
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 51/375 (13%)
Query: 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
H++F + T L+S + D AL +FD KN+ + +I G + HF+ I
Sbjct: 147 HDVF----VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
F +L + ++P+ + V + A L + G + I SG+ + FV L DMYV+
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---- 232
G A +F PEK+ ++ W+ +I G + G ++A++LF M +N+
Sbjct: 263 CGNLERANLIFSAMPEKD----IVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318
Query: 233 ------------------WVS-----------------LIDGFMRKGDLKKAGELFEQMP 257
W S LID + + G + +A E+F M
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
K V W AM+ G S NG A+ ++F + G+R ++ T + L C G + G +
Sbjct: 379 RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438
Query: 318 VHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAI 374
N + F L +I +VD+ + G + EA L+ + + + W A++ G +
Sbjct: 439 FFNNMK-RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKL 497
Query: 375 HGRYEQAIQYFKKMM 389
H A Q KK++
Sbjct: 498 HKDTHLAEQVLKKLI 512
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 170/544 (31%), Positives = 277/544 (50%), Gaps = 71/544 (13%)
Query: 15 PTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
PT N S ++ H +SLI + TKQL+QIHAQ++ LF ++LI++A
Sbjct: 18 PTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77
Query: 74 SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRL 130
+L S+DYA +FD NL+ +N LIR A +S+ + F+ ML S P++
Sbjct: 78 ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKS----------------------GVEYDAFVRV 168
T+PF+ K+ + L L G+ H +++K G+ Y FV +
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197
Query: 169 HLADM---------YVQLGKTRGAFKVFDETP---------------------------- 191
D+ +VQ G A ++F E
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257
Query: 192 ------EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
E+N+ ES+ L N +++ +K G + A LF MP+K++ SW +++ G+ + G
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSAL 303
+ A +F+ MP + + +W A+I+ + Q G+ ++AL +F ++ L + ++ T+VS L
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
SACA++GA++ G +H YI L + T+L+DMY KCG+++ A +VF + KD+
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
W+AMI GLA+HG + AI F KM +P+ F IL AC + G V+ FF+ M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
Y + P VKH+ +V++L R G +++A+ I KMP P +WGAL AC H++ +
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVL 557
Query: 484 AKIA 487
A+ A
Sbjct: 558 AEQA 561
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 169/484 (34%), Positives = 266/484 (54%), Gaps = 39/484 (8%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
+P N + KP + +ET I L+ + NS +LRQ+HAQII N S T++
Sbjct: 13 SPNRNQIHNVKPQS--SETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVC 70
Query: 74 SLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ S YA IF + F N ++ LAE I F + + V P+ T
Sbjct: 71 AFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFT 130
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
V ++ +L LS GR LH ++ K G +++Y+Q
Sbjct: 131 CSSVLRACLNLLDLSNGRILHGVVEKVGFR---------SNLYLQ--------------- 166
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
N++++ + G + +A LF MP+++V +W +I +++GD + A +
Sbjct: 167 -----------NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF +MPE+ V SWT+MI G+ Q G+A++A+ +F +M +AGV+ N+ TVV+ L+ACA +GA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
L+ G+R+H Y + + F I L+DMY KCG +E A VF E +E+ +++W+AMI G
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGG 335
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA+HGR E+A++ F M G EP+G F+ +L AC + G + FF SM DY I P
Sbjct: 336 LAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIP 395
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
++H+ +V+LLSR G + +A FI MP P+ V+WGAL ACR HK+ ++A+ A++
Sbjct: 396 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455
Query: 492 CSLN 495
L+
Sbjct: 456 LELD 459
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 159/410 (38%), Gaps = 55/410 (13%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
SN + I+ L S + R + ++ ++ + + QLI + D +
Sbjct: 161 SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD----L 216
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F +N+ + +I G + + I F M V+ N +T V + A L L
Sbjct: 217 FSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 276
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LG +H + G + + + L DMYV+ G A KVF+E E+ +V+ W+ +
Sbjct: 277 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER----TVVSWSAM 332
Query: 206 INGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKG 260
I G + G +A+ LF M + N +++ L+ G + + F M + G
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392
Query: 261 VVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
++ + M++ S+ G +A M ++ N + L AC
Sbjct: 393 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNM---PMKPNGVVWGALLGAC---------- 439
Query: 317 RVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLT--- 364
RVH + + +K + L ++YA+ G E + V K++ +
Sbjct: 440 RVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPG 499
Query: 365 WTAM---------IWGLAIHGRYEQAIQ----YFKKMMYSGTEPDGTVFL 401
W+++ + G H EQ Q ++M G P+ +V L
Sbjct: 500 WSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 173/515 (33%), Positives = 264/515 (51%), Gaps = 77/515 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLI 101
+ LR IHAQ+I L ++ ++LI L D YA+S+F+ NL I+N +
Sbjct: 4 QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
RG A +S S + +V M+ L + PN T+PF+ KS A G+ +H ++K G +
Sbjct: 64 RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------------------- 194
D +V L MYVQ G+ A KVFDE+P ++
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------- 231
+ V+ WN +I+G ++ G ++A+ELF M K NV
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243
Query: 232 ---SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
SW+ +LID + + G+L+ A LFE +P K V+SW +I G++
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---- 331
++AL +F +ML +G ND T++S L ACA +GA++ G +H YI D LKG
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI---DKRLKGVANA 360
Query: 332 -AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
++ T+L+DMYAKCG+IEAA VF K L +W AMI+G A+HGR + + F +M
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+G EPD F+ +L+AC +SG + L + F SM DY + P ++H+ +++LL G
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A IN M PD VIW +L AC+ H + ++ +
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 515
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 166/379 (43%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI + I+ A +FD K++ +N +I G AE +++ + F M++ +VR
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 280
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F+ P K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 281 FEGLPYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 336
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F + K + SW
Sbjct: 337 LGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 396
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A+ + +F +M G+ +D T V LSAC+ G L+ G + ++
Sbjct: 397 AMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT-Q 455
Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ G EA ++ E D + W +++ +HG E
Sbjct: 456 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 515
Query: 383 QYFKKMMYSGTEPDGTVFL 401
+ + ++ E G+ L
Sbjct: 516 SFAQNLIKIEPENPGSYVL 534
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H+ I H ++ +I LI S
Sbjct: 215 MKTNVRPDESTMVT-VVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGE 273
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 274 LETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 333
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VF+ K+ S
Sbjct: 334 CAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 393
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G + ++F M K + ++V L+ G L +
Sbjct: 394 S----WNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHI 449
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M + ++ + MI+ +G ++A M M + + S L AC
Sbjct: 450 FRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACK 506
Query: 308 KVGALEAG 315
G +E G
Sbjct: 507 MHGNVELG 514
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 247/462 (53%), Gaps = 38/462 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E I+ + + QL++IHA ++ +L S+ + T+++ S + YA +F
Sbjct: 10 ENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLL 69
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSL 147
N+ +N +IR A N H S IS FV ML S V P++ T+PFV KS + L
Sbjct: 70 HPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H L+ K G ++ L DMY
Sbjct: 130 GMQVHGLVYKFGADFHCITENALIDMY--------------------------------- 156
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+K G L A ++F M ++V SW SLI G+++ G + A ELF+ MP + +VSWT M
Sbjct: 157 --TKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTM 214
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G+ + G AL +F +M G+ ++ ++++ L ACA++GALE G +H Y N F
Sbjct: 215 ITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGF 274
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
K I AL++MYAKCG I+ A +F + EKD+++W+ MI GLA HG+ +AIQ F++
Sbjct: 275 LRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEE 334
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M P+ FL +L AC ++G L +FD M Y IEP ++H+ +++LL R G
Sbjct: 335 MCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSG 394
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +AL+ I+KMP PD IW +L +CR H++ +IA IA++
Sbjct: 395 CLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVK 436
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 269/481 (55%), Gaps = 19/481 (3%)
Query: 13 IAPTTNIKSSHK--PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
I TN +S+++ PS SL + N+ L+QIHA +I+ ++ +LI
Sbjct: 2 IRKRTNDRSTNRKQPS---------SLWKNCNNLLALKQIHATLIIKGFNSNRAALRELI 52
Query: 71 --SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+ ++ +I+YA +F T ++ ++N ++RG +++ + + + M V+P+
Sbjct: 53 FAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPD 112
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+ T+ F+ K L G +H ++K G E ++FVR L + G A +F
Sbjct: 113 KFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFY 172
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+ PE+ SV+ W+ L G ++ G L A ++F MP K++ SW +I G+++ G+++
Sbjct: 173 DLPER----SVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMEN 228
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF++ PEK VV+W MI G+ GE +AL MF +M + G ++ T++S LSACA
Sbjct: 229 ARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACAD 288
Query: 309 VGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+G L+ G ++H IS G L +G ALVDMYAKCG+IE A VF + +EKD+ TW +
Sbjct: 289 LGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNS 348
Query: 368 MIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+I GLA HG E++I+ F +M +P+ F+ ++ AC ++G V+ +F MR
Sbjct: 349 VIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRER 408
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y IEP++ HH +V+LL R G + +A I KM P+ +IW L ACR H + ++ ++
Sbjct: 409 YDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRL 468
Query: 487 A 487
A
Sbjct: 469 A 469
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 259/480 (53%), Gaps = 41/480 (8%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRIT 66
+L ++++ T N ++ PSN I+SL + + + L+Q+HAQII H N
Sbjct: 49 KLQSSMSRTPN-PLTNPPSN----PQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSAL 103
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
L + + + YA +IF H ++N LIR L+ + + + ML+ ++
Sbjct: 104 ASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLK 163
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ +TYPFV K+ S+ G +H +VKSG E D+++ L +Y GK GA K
Sbjct: 164 PDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYAN-GKDLGAAK- 221
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
+LF + ++V SW ++IDG+++ ++
Sbjct: 222 ---------------------------------QLFNLCSARDVVSWNAMIDGYVKHVEM 248
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +F++M + V+SW MING++ G+ +ALA+F QM GV+ + TVVS LSAC
Sbjct: 249 GHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 308
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A +GAL+ G+ +H YI+ N + +GTALVDMYAKCG I A+ VF + KD+L W
Sbjct: 309 AHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWN 368
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+I G+AIHG ++A Q FK+M +G EP+ F+AIL+AC ++G V D M
Sbjct: 369 TIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 428
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y IEP V+H+ V++LL+R G +++A+ I MP P+ GAL CR H + ++ ++
Sbjct: 429 YGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEM 488
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 254/474 (53%), Gaps = 39/474 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
E + I + S + ++I+A II+H L SS + T+++ + +DYA +F+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
+ N+ ++N +IR NS + I + +LR S P+R T+PF+ KS ASL LG
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + K G + L DMY++ A KVFDE
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
M +++V SW SL+ G+ R G +KKA LF M +K +VSWTAMI
Sbjct: 170 ----------------MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMI 213
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++ G +A+ F +M AG+ ++ +++S L +CA++G+LE G +H Y F
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFL 273
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ + AL++MY+KCG I A +FG+ + KD+++W+ MI G A HG AI+ F +M
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+G FL +L+AC + G + L +FD MR DY IEP ++H+ ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502
+++A+ MP PD IWG+L +CRT + +A +A+ L P+ M
Sbjct: 394 LERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELE---PEDM 444
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 259/459 (56%), Gaps = 8/459 (1%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
+SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 1 LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ FV K+V + L G +
Sbjct: 61 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
HC +K G+E FV L MY G A KVFDE + N ++ WN +I C +
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITACFR 176
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI G
Sbjct: 177 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 236
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 237 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 296
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 297 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 356
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G++
Sbjct: 357 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 416
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
KA +FI +MP P ++W L AC +H + ++A+ Q
Sbjct: 417 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 455
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/516 (32%), Positives = 270/516 (52%), Gaps = 40/516 (7%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
I+ +H + ++QIHAQ+I +L I +LI+S SL ++ A+++F+ N+
Sbjct: 26 ITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNV 85
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVR---PNRLTYPFVSKSV-ASLSLLSLGRG 150
H++N LIR + + + + + F +L++ V + TYPF+ K S S LSL +
Sbjct: 86 HLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKM 145
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H + K G +D FV L D Y + G A KVF E++ V+ WN ++ G
Sbjct: 146 VHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERD----VVSWNSMVGGLV 201
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G L A+++F MP+++ SW +++DGF + G++ KA +LFE+M E+ +VSW+ M+ G
Sbjct: 202 KNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCG 261
Query: 271 FSQNGEAEKALAMF-------------------------------FQMLDAGVRANDFTV 299
+S+NG+ + A +F +M +G+R +D
Sbjct: 262 YSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFF 321
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETK 358
+S L+ACA+ G L G ++H+ + F + + +DMYAKCG ++ A VF G
Sbjct: 322 ISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKT 381
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EKDL++W +MI G IHG E++I+ F M+ G +PD F+ +L AC ++G V
Sbjct: 382 EKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRG 441
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F SM+ Y I P ++H+ +V+LL R G + +A + MP P+ +I G L ACR H
Sbjct: 442 YFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMH 501
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
D K+A + L S P S Q GD
Sbjct: 502 NDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGD 537
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 181/266 (68%), Gaps = 21/266 (7%)
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
VSL+D +++ G+L +LF++ P Q +AE L L GVR
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESP---------------QRNKAESIL------LWNGVR 215
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
ND TVVSAL AC K+GAL+ G R+HNY+S N F L IGTALVDMYAKCGNI++AS V
Sbjct: 216 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 275
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F ETK KDLLTW+ MIWG AIHG ++QA+Q F KM +G PD +FLAILTAC +SG V
Sbjct: 276 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 335
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
LNFF+SMR DY IEP++KH+T++V+LL R G++D+AL+FI MP PDFVIWGALFC
Sbjct: 336 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 395
Query: 474 ACRTHKDTKIAKIALQSSCSLNLSIP 499
ACR HK+ ++A++ + L P
Sbjct: 396 ACRAHKNIEMAELTAEKLLQLEPKHP 421
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/399 (39%), Positives = 239/399 (59%), Gaps = 20/399 (5%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+H PS + ETH I LIH+SN+ QL QIHAQI LHNLF++SR+ TQLISS+ KS+DY
Sbjct: 32 AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
ALSIF F NL +FN LIRGLAENS F+ +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91 ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + LGR LH ++K G+E+D+FVRV L DMYV++G+ ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210
Query: 202 WNVL----------INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLK 247
WN + + C+KIG L+ + + N +L+D + + G++K
Sbjct: 211 WNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIK 270
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A +F + K +++W+ MI G++ +G ++AL F +M AG+ ++ ++ L+AC+
Sbjct: 271 SASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 330
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
G ++ G+ + D+ ++ + T +VD+ + G + EA S + D +
Sbjct: 331 HSGNVDQGLNFFESMRL-DYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 389
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLA 402
W A+ H E A +K++ P VFL+
Sbjct: 390 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLS 428
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 252/464 (54%), Gaps = 40/464 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + ++ + +L++IHA I+ +L SS + T+++ + + +YA +F
Sbjct: 14 EDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVA 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLL 145
N ++N +IR N + I+ + ML + P++ T+PFV KS A L
Sbjct: 74 DPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCY 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LG+ +H + K G + + V L +MYV+ A +VF+E
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEE---------------- 177
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
M +++ SW +LI G +R G +++A +FE+M +K + SWT
Sbjct: 178 -------------------MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWT 218
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
A+++G+++ G AL F +M G+ ++ ++VS L CA++GALE G +H Y
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 278
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F + AL++MYAKCG+I+ +F + KE+D+++W+ MI GLA HGR +AI+ F
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELF 338
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
++M + EP F+ +LTAC ++G + L +F+SM+ DY IEP V+H+ +VNLL
Sbjct: 339 QEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 398
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
G++D+AL + KMP PD IWG+L +CR+H + KIA IA++
Sbjct: 399 SGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAME 442
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 256/482 (53%), Gaps = 42/482 (8%)
Query: 43 STKQLRQIHA----QIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
+ +++ Q+HA I ++ F SSR+ L S ++ + YA SIFD ++L +N
Sbjct: 25 APQEVEQLHAFSLKTAIFNHPFVSSRLLA-LYSDPKIN-DLGYARSIFDRIQRRSLIHWN 82
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+I+ EN I F ++ P+ T P V K A L ++ G+ +H L +K
Sbjct: 83 TIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKI 141
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFD------------------------------ 188
G D FV+ L +MY + G+ A KVFD
Sbjct: 142 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201
Query: 189 -ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
E PE++ W VL++G SK G + A +LF MP +N+ SW ++I+G+M+ GD
Sbjct: 202 EEMPERD----AFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFD 257
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A ELF QMP +V+W MI G+ NG+ A+ MFF ML G R + T+VS LSA +
Sbjct: 258 SALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 317
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ L G +H+Y+ N F L G +GT+L++MYAKCG IE+A VF ++K + WTA
Sbjct: 318 GLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTA 377
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I GL IHG A+ F +M +G +P+ +F+ +L AC ++G V +FD M +Y
Sbjct: 378 IIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEY 437
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
IEP+++H+ +V++L R G +++A N I MP +P+ VIW +L R H I + A
Sbjct: 438 KIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYA 497
Query: 488 LQ 489
Q
Sbjct: 498 AQ 499
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 112/285 (39%), Gaps = 43/285 (15%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
T ++ + + R++ Q+ NL + + + + S D AL +F
Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF----DSALELFYQMPI 268
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+L +N++I G N F + F ML+L RP+ T V +V+ L++L GR +
Sbjct: 269 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 328
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
H + K+G E D + L +MY + G A VF +K
Sbjct: 329 HSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMA 388
Query: 195 ---------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVASWV 234
K +++ VL N C+ G + + F MM + + +
Sbjct: 389 NHALALFLEMCKTGLKPNAIIFIGVL-NACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYG 447
Query: 235 SLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAE 278
L+D R G L++A E MP V W +++ G +G+ +
Sbjct: 448 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKID 492
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 266/494 (53%), Gaps = 45/494 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPKNL 94
++ + K L+Q+HA ++ IT ++ SA+L +IDYALSIF+H
Sbjct: 27 ILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPES 86
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+NV+IRGLA + + F M SV+ ++ T+ V K+ + + L G +H L
Sbjct: 87 SAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHAL 146
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
I+KSG + + FV L MY G+ A VFD PE+ S++ WN +++G +K G
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPER----SIVAWNSMLSGYTKNGL 202
Query: 215 LRKAVELF----------------------GMMP-----------------KKNVASWVS 235
+ V+LF G + ++N S
Sbjct: 203 WDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTS 262
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + G + A +LF++M ++ VV+W+AMI+G++Q ++AL +F +M V N
Sbjct: 263 LIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPN 322
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ T+VS L +CA +GA E G VH YI L +GT L+D YAKCG I+ + VF
Sbjct: 323 EVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFK 382
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E K++ TWTA+I GLA +G + A+++F M+ + +P+ F+ +L+AC ++ V
Sbjct: 383 EMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQ 442
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ F+SMR D+ IEP ++H+ +V++L R G +++A FI+ MP P+ V+W L +C
Sbjct: 443 GRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASC 502
Query: 476 RTHKDTKIAKIALQ 489
R HK+ ++A+ +L+
Sbjct: 503 RAHKNIEMAEKSLE 516
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 49/359 (13%)
Query: 36 SLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
S++ + + K LR Q+HA I+ ++ + LI + I A +FD +
Sbjct: 126 SVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPER 185
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ +N ++ G +N + + F +L L + + +T V + L+ L +G +
Sbjct: 186 SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIG 245
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
IV G+ + + L DMY + G+ A K+FDE +++ V+ W+ +I+G ++
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRD----VVAWSAMISGYAQA 301
Query: 213 GYLRKAVELFGMMPKKNV----------------------ASWV---------------- 234
++A+ LF M K NV WV
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361
Query: 235 -SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
LID + + G + ++ E+F++M K V +WTA+I G + NGE + AL F ML+ V+
Sbjct: 362 TQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
ND T + LSAC+ ++ G + N + DF ++ I +VD+ + G +E A
Sbjct: 422 PNDVTFIGVLSACSHACLVDQGRHLFNSMR-RDFDIEPRIEHYGCMVDILGRAGFLEEA 479
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 277/529 (52%), Gaps = 57/529 (10%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
I T N ++H P ++SL+ STK L+QIH Q +H++ + + +Q IS
Sbjct: 8 IFKTINTNTNHSPI-----FLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISL 62
Query: 73 ASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRL 130
K Y+ IF H TP N + FN+++R H H ++ L++ PN
Sbjct: 63 ----KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNF 118
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+PFV + A+L + + R HC + K G++ D + MY + G+ A KVFDE
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------------------- 229
EK+ ++ WN L++G +K+G+ R+AVE+FG + +++
Sbjct: 179 TEKD----LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234
Query: 230 --VASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ WV +LI + + G+L + +F+ MP + ++W A I+
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
++QNG A++A+++F M + GV N T+ + LSACA +GAL+ G ++ Y +
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD 354
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ TAL+DMYAKCG++E+A VF + K+ +W AMI LA HG+ ++A+ F++M
Sbjct: 355 IFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSD 414
Query: 391 SG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ F+++L+AC ++G V FD M + + P ++H++ +V+LLSR G
Sbjct: 415 EGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGH 474
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+ +A + I KMPE PD V GAL AC+ K+ I + +Q L+ S
Sbjct: 475 LYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPS 523
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/540 (33%), Positives = 274/540 (50%), Gaps = 79/540 (14%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
SS P +++ +SL+H+ + + LR IHAQ+I LHN +A S++ + S
Sbjct: 23 SSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHF- 81
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ YA+S+F+ NL I+N + RG A +S S + +V M+ L + PN T+PF+
Sbjct: 82 DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A G+ +H ++K G + D FV L +YVQ G+ A KVFD +P ++
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G ++ G ++A+ELF M K N
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261
Query: 230 --------------------------VASWV-------------SLIDGFMRKGDLKKAG 250
V SW+ SL+D + + G+L+ A
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE + K V+SW +I G++ ++AL +F +ML +G R ND T++S L ACA +G
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381
Query: 311 ALEAGVRVHNYISCNDFGLKGA-----IGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LK A + T+L+DMYAKCG+IEAA VF K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR + A F +M G EPD F+ +L+AC SG + L + F +M
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
DY I P ++H+ +++LL G +A IN M PD VIW +L AC+ + ++ +
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGE 558
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 21/473 (4%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTP 91
++S + +S K++ Q I LF + +++IS SL S+ YA +IF+
Sbjct: 115 LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAM 174
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA----------- 140
N + N +IR A++ I + FM R ++ + TYPF K+ A
Sbjct: 175 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIK 234
Query: 141 --SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L + G +HC + + G++ D F++ L +Y Q G A VFDE EK +
Sbjct: 235 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEK----T 290
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WNV+I+ +I A L G MP KNV SW LI ++R G ++ A +F++MPE
Sbjct: 291 ITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPE 350
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VSW +MI G+ Q + +ALA+F +M A V A D T++S L ACA+ GALE G ++
Sbjct: 351 RDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKI 410
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + ++ ++G + ALVDMYAKCG++ A VF E K K + W AMI LA+HG
Sbjct: 411 HLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYC 470
Query: 379 EQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E+A++ F M S G P+ F+ +L AC + G V FF+ M +Y I P +KH+
Sbjct: 471 EEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHY 530
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V+LLSR G + +A + I MP + V+W L ACR H +A+ + Q
Sbjct: 531 GCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQ 583
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 277/529 (52%), Gaps = 57/529 (10%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
I T N ++H P ++SL+ STK L+QIH Q +H++ + + +Q IS
Sbjct: 8 IFKTINTNTNHSPI-----FLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISL 62
Query: 73 ASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRL 130
K Y+ IF H TP N + FN+++R H H ++ L++ PN
Sbjct: 63 ----KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNF 118
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+PFV + A+L + + R HC + K G++ D + MY + G+ A KVFDE
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------------------- 229
EK+ ++ WN L++G +K+G+ R+AVE+FG + +++
Sbjct: 179 TEKD----LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234
Query: 230 --VASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ WV +LI + + G+L + +F+ MP + ++W A I+
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
++QNG A++A+++F M + GV N T+ + LSACA +GAL+ G ++ Y +
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD 354
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ TAL+DMYAKCG++E+A VF + K+ +W AMI LA HG+ ++A+ F++M
Sbjct: 355 IFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSD 414
Query: 391 SG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ F+++L+AC ++G V FD M + + P ++H++ +V+LLSR G
Sbjct: 415 EGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGH 474
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+ +A + I KMPE PD V GAL AC+ K+ I + +Q L+ S
Sbjct: 475 LYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPS 523
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 275/542 (50%), Gaps = 72/542 (13%)
Query: 18 NIKSSHKPS-NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
N + ++P+ NN H ISLI +S +QL+Q HA +I +F+ ++L + A+L
Sbjct: 17 NFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALS 76
Query: 77 K--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR--PNRLTY 132
S++YA +FD N +N LIR A I F+ M+ + PN+ T+
Sbjct: 77 SFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTF 136
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHL 170
PF+ K+ A +S LSLG+ LH + +KS V D F +
Sbjct: 137 PFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 196
Query: 171 ADM---------YVQLGKTRGAFKVFDETP------------------------------ 191
D+ +VQ G A ++F +
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256
Query: 192 ----EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 316
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSA 305
+ A E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSA
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA+VGALE G +H+YI N + + +AL+ MY+KCG++E A VF +++D+ W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+AMI GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMES 496
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
Y I P KH+ +V++L R G ++KA+ FI MP P +WGAL AC+ H + +A+
Sbjct: 497 SYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAE 556
Query: 486 IA 487
+A
Sbjct: 557 MA 558
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 15/295 (5%)
Query: 205 LINGCSKIGYLRKA---VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
LI+ CS + L++ + GM AS + I L+ A ++F+++P+
Sbjct: 37 LIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNS 96
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+W +I ++ + ++ F M+ ++ N +T + A A+V +L G +H
Sbjct: 97 FTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH 156
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ G + +L+ Y CG++++A VF KEKD+++W +MI G G +
Sbjct: 157 GMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 216
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A++ FKKM + + +L+AC K+ F Y E V + +
Sbjct: 217 KALELFKKMESEDVKASHVTMVGVLSAC-----AKIRDLEFGRRVCSYIEENRVNVNLTL 271
Query: 440 VN----LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
N + ++ G ++ A + M E D V W + +D + A+ L +
Sbjct: 272 ANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYEAAREVLNA 325
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 52/525 (9%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
AP SH+ + E H+ SL H + ++++HAQ++ L ++LI+S
Sbjct: 12 APKWGGAPSHR---RLVEEHLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASY 68
Query: 74 SLHKSIDYALSIFD--------HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
+L + + +F F + L+R A NS + ++ F L + +
Sbjct: 69 ALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVF---LDVPL 125
Query: 126 RPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---------- 174
R TY F+ K++A+ L + RG H +VK G D FV L D Y
Sbjct: 126 RQRGTFTYSFLIKALAAAGLTPV-RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAK 184
Query: 175 ---------------------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
V+ G+ A +FDE PEK+ + WN +++G +K G
Sbjct: 185 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKD----TVSWNTMLDGYAKAG 240
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
KA ELF MP +NV SW +++ + +KGD++ A +F++MP K +V+WT M++ +Q
Sbjct: 241 EAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQ 300
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G E+A +F +M+DA + + VVS L+ACA+ G+L G R+H ++ +
Sbjct: 301 KGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLV 360
Query: 334 GTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
AL+DM+ KCG + A +F E EKDL++W +I G A+HG E+A++ F +M G
Sbjct: 361 CNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQG 420
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PD + +L+AC + G V+ FF +M DY I+P ++H+ +V+LL R G + +A
Sbjct: 421 FHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEA 480
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
++ I +MP P+ VIWG+L ACR HK+ + A++A+ +L S
Sbjct: 481 VDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPS 525
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 52/525 (9%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
AP SH+ + E H+ SL H + ++++HAQ++ L ++LI+S
Sbjct: 84 APKWGGAPSHR---RLVEEHLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASY 140
Query: 74 SLHKSIDYALSIFD--------HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
+L + + +F F + L+R A NS + ++ F L + +
Sbjct: 141 ALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVF---LDVPL 197
Query: 126 RPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---------- 174
R TY F+ K++A+ L + RG H +VK G D FV L D Y
Sbjct: 198 RQRGTFTYSFLIKALAAAGLTPV-RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAK 256
Query: 175 ---------------------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
V+ G+ A +FDE PEK+ + WN +++G +K G
Sbjct: 257 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKD----TVSWNTMLDGYAKAG 312
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
KA ELF MP +NV SW +++ + +KGD++ A +F++MP K +V+WT M++ +Q
Sbjct: 313 EAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQ 372
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G E+A +F +M+DA + + VVS L+ACA+ G+L G R+H ++ +
Sbjct: 373 KGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLV 432
Query: 334 GTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
AL+DM+ KCG + A +F E EKDL++W +I G A+HG E+A++ F +M G
Sbjct: 433 CNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQG 492
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PD + +L+AC + G V+ FF +M DY I+P ++H+ +V+LL R G + +A
Sbjct: 493 FHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEA 552
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
++ I +MP P+ VIWG+L ACR HK+ + A++A+ +L S
Sbjct: 553 VDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPS 597
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 168/500 (33%), Positives = 263/500 (52%), Gaps = 49/500 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII--LHNLFASSRITTQLISSASLHKSID--YALSIFDHFT 90
+S + + S K L+QIHA II + + A I+T+L + + ID YALS+
Sbjct: 26 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 85
Query: 91 PKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
NL ++N +IRGLA N+ + + ML + P+ T PFV K+ A + G
Sbjct: 86 TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 145
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H +K G+ D +V L MY R A KVFD +P+++ ++ W +I G
Sbjct: 146 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD----LVSWTTMIQGY 201
Query: 210 SKIGYLRKAVELFGMMPKKNVAS------------------------------------- 232
K+G+ R+ V LF M +N+ +
Sbjct: 202 VKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLD 261
Query: 233 ---WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+L+D +++ GD A ++F++MP K VVSW +MI+G +Q G+ +++L MF +M
Sbjct: 262 VFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQR 321
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
GV+ +D T+V+ L++CA +G LE G VH Y+ N G IG ALVDMYAKCG+I+
Sbjct: 322 LGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQ 381
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF KD+ ++TAMI GLA+HG+ +A+ F +M G EPD F+ +LTAC +
Sbjct: 382 ACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSH 441
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
G V+ +F+ M Y + P ++H+ +V+LL R G +++A FI MP PD + G
Sbjct: 442 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLG 501
Query: 470 ALFCACRTHKDTKIAKIALQ 489
AL AC+ H ++ + ++
Sbjct: 502 ALLGACKIHGKVELGESVMK 521
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 184/418 (44%), Gaps = 48/418 (11%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+N T ++ S + ++ ++H Q I L + ++ L+ ++ I A +F
Sbjct: 124 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 183
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D ++L + +I+G + + + F M +++ + +T V S A L L
Sbjct: 184 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLR 243
Query: 147 LGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
LGR LH I++ S V D FV L DMY++ G A KVF E P KN V+ WN +
Sbjct: 244 LGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN----VVSWNSM 299
Query: 206 INGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV--------- 234
I+G ++ G ++++ +F M + V WV
Sbjct: 300 ISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQI 359
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D + + G + +A +F+ M K V S+TAMI G + +G+ KAL +F +
Sbjct: 360 RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSE 419
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKC 344
M G+ ++ T V L+AC+ VG +E G + +S + L+ + +VD+ +
Sbjct: 420 MPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMS-TIYNLRPQLEHYGCMVDLLGRA 478
Query: 345 GNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
G I EA + E D A++ IHG+ E KK+ DG L
Sbjct: 479 GLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVL 536
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 151/452 (33%), Positives = 263/452 (58%), Gaps = 13/452 (2%)
Query: 45 KQLRQIHAQIILHNLFASSR--------ITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
K L+QIHA +I++ + I+T L+ + +YA +F + +
Sbjct: 16 KTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFM 75
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV+IRG +++ + IS + M R V+ + T+PFV K+ L ++ G +H +++
Sbjct: 76 YNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVL 135
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ G +A VR L + + G A +FD++ + + V+ W+ LI G ++ G L+
Sbjct: 136 RLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGD----VVAWSSLIAGYARRGDLK 191
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A +LF MP++++ SW +I G++++G+++ A LF++ P K VVSW AMI G+ G
Sbjct: 192 VARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGL 251
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGT 335
+++AL +F +M AGV ++ T++S LSACA +G LE G +VH + G L +G
Sbjct: 252 SKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGN 311
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
AL+DMYAKCGNI+ + VF +KD+++W ++I G+A+HG ++++ FK M + P
Sbjct: 312 ALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICP 371
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+ F+ +L AC ++G++ +FD M +Y IEP+++H +V++L R G + +A F
Sbjct: 372 NEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKF 431
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I+ M P+ +IW L AC+ H D ++AK+A
Sbjct: 432 IDSMKIEPNAIIWRTLLAACKVHGDVELAKVA 463
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 254/447 (56%), Gaps = 10/447 (2%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFTPKNLHIFNV 99
+T L Q HA +I+ L + T+L++ A+L S + +A +IF H + +FN
Sbjct: 23 ATSHLHQAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHNPSPFMFNT 82
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+I +S ++ +V ML P+ T+PF+ KS ++ LG LH +VK G
Sbjct: 83 IIMA---SSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFG 139
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
++ D FV ++ +Y + R A KVFDE+ V+ W LI G S G + +A
Sbjct: 140 LDRDVFVVNNMIALYSSFRELRSARKVFDES---YSLVDVVSWTTLITGFSNSGQIDEAR 196
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
++F +MP KN SW ++I G+ + +A +LF++MP++ SW+AM++G+SQ G +
Sbjct: 197 KIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 256
Query: 280 ALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
AL +F +M+ + N+ +VSA+SACA++ ALE G +H+YI + +GT L+
Sbjct: 257 ALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLL 316
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMY KCG+I A+ VF E+++ +W +MI GLA++G ++A+ F KM + G P+
Sbjct: 317 DMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAI 376
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+A+LT C +SG + F M Y I+P +KH+ +V+LL R G V +AL+F+ K
Sbjct: 377 TFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEK 436
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAK 485
MP P +WGAL ACR H ++ +
Sbjct: 437 MPMKPHSELWGALVGACRIHGQVELGE 463
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 269/525 (51%), Gaps = 77/525 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
+SL+H+ + + LR IHA++I L ++ ++LI + L D YA+S+FD
Sbjct: 6 LSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
NL I+N + RG A +S S + +V M+ L + PN T+PF+ K+ A G+ +
Sbjct: 66 PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
H ++K G + D +V L MYV+ G+ A KVFD++ ++
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYI 185
Query: 195 ----------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
+ V+ WN LI+G ++ G ++A+ELF M K NV
Sbjct: 186 XSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSAC 245
Query: 232 -------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
SW+ +LID +++ G+++ A LFE + K V+SW
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWN 305
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+I G++ ++AL +F +ML +G N+ T++S L ACA +GA++ G +H YI
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYI--- 362
Query: 326 DFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
D LKG ++ T+L+DMYAKCG+IEAA VF + L +W AMI+G A+HGR
Sbjct: 363 DKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A F +M G EPD F+ +L+AC +SG + L + F SM DY I P ++H+ ++
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+LL G +A IN M PD VIW +L AC+ H + ++ +
Sbjct: 483 DLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGE 527
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/450 (20%), Positives = 185/450 (41%), Gaps = 80/450 (17%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+ T ++ S + ++ +QIH ++ + T LI+ + + A +F
Sbjct: 102 NSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVF 161
Query: 87 DHFTPKNLHIFNVLIRGLAENSH-------------------------------FQSCIS 115
D + +++ + LI+G A N + ++ +
Sbjct: 162 DQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALE 221
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
F M++ +V+P+ T V + A + + LGR +H I G + + L D+Y+
Sbjct: 222 LFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYI 281
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK- 228
+ G+ A +F+ K+ V+ WN LI G + + ++A+ LF G P +
Sbjct: 282 KCGEVETASGLFEGLSYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337
Query: 229 ---------------NVASWV-------------------SLIDGFMRKGDLKKAGELFE 254
++ W+ SLID + + GD++ A ++F+
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
M + + SW AMI GF+ +G A A +F +M G+ +D T V LSAC+ G L+
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457
Query: 315 GVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWG 371
G + ++ D+ + + ++D+ G EA ++ + D + W +++
Sbjct: 458 GRHIFRSMT-EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKA 516
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+HG E + + ++ + G+ L
Sbjct: 517 CKMHGNVELGESFAQNLIKIEPKNSGSYVL 546
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 140/332 (42%), Gaps = 30/332 (9%)
Query: 6 FNRLTTAIAPTTN-----------IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQI 54
+N L + A T N +K++ KP + T ++S S S + RQ+H+ I
Sbjct: 203 WNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT-VLSACAQSASIELGRQVHSWI 261
Query: 55 ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
H ++ +I LI ++ A +F+ + K++ +N LI G + ++ +
Sbjct: 262 DDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 321
Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLAD 172
F MLR PN +T + + A L + +GR +H I K GV + +R L D
Sbjct: 322 LLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLID 381
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA- 231
MY + G A +VFD ++ S WN +I G + G A ++F M K +
Sbjct: 382 MYAKCGDIEAAQQVFDSMLNRSLSS----WNAMIFGFAMHGRANPAFDIFSRMRKDGIEP 437
Query: 232 ---SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAM 283
++V L+ G L +F M E ++ + MI+ +G ++A M
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 497
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M + + S L AC G +E G
Sbjct: 498 INSM---EMDPDGVIWCSLLKACKMHGNVELG 526
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 248/460 (53%), Gaps = 36/460 (7%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
E + I + S + ++IHA II+H L SS + T+++ +DYA +F+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQV 68
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
+ N+ ++N +IR NS + I + +LR ++ P+R T+PF+ KS ASL LG
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLG 128
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + K G + L DMY++ A KVFDE
Sbjct: 129 KQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
M +++V SW SL+ G+ R G +KKA LF M +K +VSWTAMI
Sbjct: 170 ----------------MSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMI 213
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++ G +A+ F +M AG+ ++ +++S L +CA +G+LE G +H Y
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLL 273
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ + AL++MY+KCG + A +F +TK KD+++W+ MI G A HG +A + F +M
Sbjct: 274 KQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEM 333
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+G FL +L+AC + G + L +FD MR DY IEP ++H+ ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
+++A+ MP PD IWG+L +CRT + +A +A+
Sbjct: 394 LERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAM 433
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 257/473 (54%), Gaps = 46/473 (9%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI------SSASLHKSI 79
S++ T+ I L+ + S + L+QI QI+ S + + S +LH
Sbjct: 27 SSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLH--- 83
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
YA IF++ L I+N++I+ +N F+ + F + + P+ TYPFV K++
Sbjct: 84 -YAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAI 142
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
L + G ++ +VKSG+E+D +V L DMY ++G+ + +VF+E P+++ V
Sbjct: 143 GCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD----V 198
Query: 200 LLWNVLINGCSKIGYLRKAVE----LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ WNVLI+G K AV+ +F MP K V W S++ G++ G L +A ELFE+
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 258
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
P + VV WTAMING+ Q + A+A+F +M V + FT+V+ L+
Sbjct: 259 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT----------- 307
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+GTAL++MYAKCG IE + +F KEKD +WT++I GLA++
Sbjct: 308 --------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMN 353
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G+ +A++ F +M+ +G +PD F+ +L+AC + G V+ F SM Y IEP ++H
Sbjct: 354 GKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEH 413
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVI---WGALFCACRTHKDTKIAK 485
+ +++LL R GQ+D+A I K P + VI +GAL ACRTH + ++ +
Sbjct: 414 YGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGE 466
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 251/453 (55%), Gaps = 44/453 (9%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+L++ HA +I + L S+ + T++I ++ +DYA +F N +++N +IR
Sbjct: 3 ELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACT 62
Query: 106 ENSHFQSCISHFVFMLRLS---------VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
NS + I + MLR + P+ T+PFV K+ A L L +LG+ +H
Sbjct: 63 HNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFF 122
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G K ++ N LI+ +K L
Sbjct: 123 KFG-----------------------------------KKSHLITENALIDMYTKCDNLL 147
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A LF M ++ SW +I G +R G +++A LF++MP + +VSWTA+I+G+++ G
Sbjct: 148 DAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGS 207
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
AL +F +M AG+ ++ +++S L ACAK+GALE G +H + + N + I A
Sbjct: 208 YIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNA 267
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L++MY KCG I+ A +F + + +D+++W+ MI GLA HG+ +AI F++M + +P+
Sbjct: 268 LIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPN 327
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
G F+ +L+AC ++G + L +FD+M+ D+ IEP ++H+ +V+LL R G++ +AL+ +
Sbjct: 328 GITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIV 387
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
KMP PD IWG+L +CRTH + ++A IA++
Sbjct: 388 EKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAME 420
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/554 (29%), Positives = 285/554 (51%), Gaps = 73/554 (13%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
+TT A ++ +KS P++ + ISL+ + S QL+Q+H Q I L A+ + +
Sbjct: 1 MTTIAATSSALKSFSPPTHPL-----ISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR 55
Query: 69 LISSASLHKSID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+++ H+ D YA +FD NL I+N +IRG + Q +S ++ MLR V+
Sbjct: 56 VMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK 115
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----AFVRVHL----------- 170
P+R T+PF+ K L GR LH ++K G++Y+ A V+++L
Sbjct: 116 PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV 175
Query: 171 ------ADM---------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
AD+ Y ++GK + ++F +K + + ++++ CSK+ L
Sbjct: 176 FDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDL 235
Query: 216 R-----------------------------------KAVELFGMMPKKNVASWVSLIDGF 240
R A+ +F M +++ SW +++ GF
Sbjct: 236 RTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF 295
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
G++ A F++MPEK VSWTAMI+G+ ++ ++AL +F M V+ ++FT+V
Sbjct: 296 TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMV 355
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L+ACA +GALE G + YI N + AL+DMY KCG+++ A +F E ++
Sbjct: 356 SVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR 415
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D TWTAMI GLA++G E+A+ F M+ + PD ++ +L+AC ++G V +F
Sbjct: 416 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYF 475
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
M + IEP++ H+ +V+LL+R G++ +A I MP + ++WGAL CR +++
Sbjct: 476 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRE 535
Query: 481 TKIAKIALQSSCSL 494
+ +A++ ++ L
Sbjct: 536 SDMAEMVVKQILEL 549
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+D A SIF + ++ + +I GLA N H + + F ML+ S+ P+ +TY V
Sbjct: 401 DVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLS 460
Query: 138 SVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ L+ GR + + G+E + L D+ + G+ + A++V + P K S
Sbjct: 461 ACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS 520
Query: 197 ESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFM---RKGDLKKAG 250
++W L+ GC + V+ + N A +V L + + R DL+
Sbjct: 521 ---IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR--- 574
Query: 251 ELFEQMPEKGV 261
EL + M +KG+
Sbjct: 575 ELRQMMMDKGI 585
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/555 (29%), Positives = 286/555 (51%), Gaps = 73/555 (13%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
++TT A ++ +KS P++ + ISL+ + S QL+Q+H Q I L A+ +
Sbjct: 21 QMTTIAATSSALKSFSPPTHPL-----ISLLETCESMDQLQQVHCQAIKKGLNANPVLQN 75
Query: 68 QLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
++++ H+ D YA +FD NL I+N +IRG + Q +S ++ MLR V
Sbjct: 76 RVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV 135
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----AFVRVHL---------- 170
+P+R T+PF+ K L GR LH ++K G++Y+ A V+++L
Sbjct: 136 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 195
Query: 171 -------ADM---------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
AD+ Y ++GK + ++F +K + + ++++ CSK+
Sbjct: 196 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 255
Query: 215 LR-----------------------------------KAVELFGMMPKKNVASWVSLIDG 239
LR A+ +F M +++ SW +++ G
Sbjct: 256 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 315
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
F G++ A F++MPEK VSWTAMI+G+ ++ ++AL +F M V+ ++FT+
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
VS L+ACA +GALE G + YI N + AL+DMY KCG+++ A +F E +
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
+D TWTAMI GLA++G E+A+ F M+ + PD ++ +L+AC ++G V +
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F M + IEP++ H+ +V+LL+R G++ +A I MP + ++WGAL CR ++
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 555
Query: 480 DTKIAKIALQSSCSL 494
++ +A++ ++ L
Sbjct: 556 ESDMAEMVVKQILEL 570
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+D A SIF + ++ + +I GLA N H + + F ML+ S+ P+ +TY V
Sbjct: 422 DVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLS 481
Query: 138 SVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ L+ GR + + G+E + L D+ + G+ + A++V + P K S
Sbjct: 482 ACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS 541
Query: 197 ESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFM---RKGDLKKAG 250
++W L+ GC + V+ + N A +V L + + R DL+
Sbjct: 542 ---IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR--- 595
Query: 251 ELFEQMPEKGV 261
EL + M +KG+
Sbjct: 596 ELRQMMMDKGI 606
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 233/431 (54%), Gaps = 41/431 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV +R LA S F IS + MLR P+ ++PF+ KS ASLSL G+ LHC ++
Sbjct: 18 WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
+ G E + FV L MY + G A KVF+E P + S+ + +N LI+G +
Sbjct: 78 RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENP--HSSQLGVCYNALISGYTANSKVS 135
Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
+ G +V + G++P V ++ S I
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+M+ G ++ LF++MP KG+++W A+I+G+SQNG A L +F QM +GV + F
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+VS LS+CA +GA + G V + N F + AL+ MYA+CGN+ A VF
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIM 315
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K L++WTAMI +HG E + F M+ G PDG VF+ +L+AC +SG L
Sbjct: 316 PVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 375
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F +M+ +Y +EP +H++ +V+LL R G++D+A+ FI+ MP PD +WGAL AC+
Sbjct: 376 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKI 435
Query: 478 HKDTKIAKIAL 488
HK+ +A++A
Sbjct: 436 HKNVDMAELAF 446
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 156/387 (40%), Gaps = 51/387 (13%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
+Q+H +I A + T LIS ++ A +F+ P + + +N LI G
Sbjct: 70 QQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEE-NPHSSQLGVCYNALISGY 128
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
NS F M V + +T + L LGR LH VK G +
Sbjct: 129 TANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEV 188
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-- 222
V MY++ G ++FDE P K ++ WN +I+G S+ G +ELF
Sbjct: 189 AVLNSFITMYMKCGSVESGRRLFDEMPVKG----LITWNAVISGYSQNGLAYDVLELFEQ 244
Query: 223 ----GMMPKK---------------------------------NVASWVSLIDGFMRKGD 245
G+ P NV +LI + R G+
Sbjct: 245 MKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGN 304
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
L KA +F+ MP K +VSWTAMI + +G E L +F M+ G+R + V LSA
Sbjct: 305 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSA 364
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
C+ G + G+ + + ++ L+ + LVD+ + G + EA + E D
Sbjct: 365 CSHSGLTDKGLELFRAMK-REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDG 423
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMM 389
W A++ IH + A F K++
Sbjct: 424 AVWGALLGACKIHKNVDMAELAFAKVI 450
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 92/212 (43%), Gaps = 6/212 (2%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW + + ++++++ ML +G + F+ L +CA + +G ++H ++
Sbjct: 17 SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL--TWTAMIWGLAIHGRYEQ 380
+ + TAL+ MY KCG +E A VF E L + A+I G + +
Sbjct: 77 IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF-DSMRFDYFIEPSVKHHTVV 439
A F++M +G D L ++ C + L + + ++ + E +V + +
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFIT 196
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ + + G V+ ++MP + W A+
Sbjct: 197 MYM--KCGSVESGRRLFDEMP-VKGLITWNAV 225
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 179/540 (33%), Positives = 278/540 (51%), Gaps = 79/540 (14%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
SS P ++I +SL+H+ + + LR IHAQ+I LHN +A S++ I S
Sbjct: 23 SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHF- 81
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ + YA+S+F NL I+N + RG A +S S + +V M+ L + PN T+PFV
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A G+ +H ++K G + D +V L MYVQ G+ A KVFD++P ++
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G ++ G ++A+ELF M K N
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 230 VAS--------------------------WV-------------SLIDGFMRKGDLKKAG 250
V W+ +LID + + G+L+ A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE++P K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +G
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR + + F +M G +PD F+ +L+AC +SG + L + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
DY + P ++H+ +++LL G +A IN M PD VIW +L AC+ H + ++ +
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 166/379 (43%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI + I+ A +FD K++ +N +I G AE +++ + F M++ +VR
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F+ P K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 324 FERLPYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F + K + SW
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A+ + +F +M G++ +D T V LSAC+ G L+ G + ++
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT-Q 498
Query: 326 DFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ G + A + + D + W +++ +HG E
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 383 QYFKKMMYSGTEPDGTVFL 401
+ + ++ E G+ L
Sbjct: 559 SFAENLIKIEPENPGSYVL 577
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H I H ++ +I LI S
Sbjct: 258 MKTNVRPDESTMVT-VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VF+ K+ S
Sbjct: 377 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G + +LF M K + ++V L+ G L +
Sbjct: 437 S----WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
Query: 253 FEQMPE 258
F M +
Sbjct: 493 FRTMTQ 498
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 252/451 (55%), Gaps = 44/451 (9%)
Query: 43 STKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
S K L++IHAQ+I L A+SR+ S A I+YA +F NL ++N
Sbjct: 8 SMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAG---DINYAYLVFTQIRNPNLFVWN 64
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+IRG +++S + IS F+ M+ S +P RLTYP V K+ A L L G LH ++
Sbjct: 65 TIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVI 124
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+E D F++ + +MYV G+L
Sbjct: 125 KLGLENDQFIQNTILNMYVN-----------------------------------CGFLG 149
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+A +F +V +W ++I G + G++ K+ LF++M + VSW +MI+G+ + G
Sbjct: 150 EAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGR 209
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+A+ +F +M + G++ ++FT+VS L+ACA +GAL G +H+YI N+F L + TA
Sbjct: 210 FFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITA 269
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
++DMY+KCG+I+ A VF +K L W ++I GLA+ GR +A++ F K+ S +PD
Sbjct: 270 IIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPD 329
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+ +LTAC ++G V A ++F M Y IEPS+KH++ +V++L R G +++A I
Sbjct: 330 HVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELI 389
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
MP PD +IWG+L +CR + + ++AK A
Sbjct: 390 KSMPVNPDAIIWGSLLSSCREYGNIEMAKQA 420
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSID 80
KPS E ++SL+++ LRQ IH I+ +N +S + T +I S SID
Sbjct: 226 KPS----EFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID 281
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
AL +F K L +N LI GLA + + F + +++P+ +++ V +
Sbjct: 282 KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV- 199
++ + + L++ + + ++ H + M LG+ + +E E KS V
Sbjct: 342 HAGMVDRAKD-YFLLMSETYKIEPSIK-HYSCMVDVLGRA----GLLEEAEELIKSMPVN 395
Query: 200 ---LLWNVLINGCSKIGYLRKA 218
++W L++ C + G + A
Sbjct: 396 PDAIIWGSLLSSCREYGNIEMA 417
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/457 (37%), Positives = 246/457 (53%), Gaps = 42/457 (9%)
Query: 45 KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
K L++IHA II H+ A+SR+ T SS+ I+YA +F NL+ +N +
Sbjct: 39 KDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSG---DINYAYLLFTTIPSPNLYCWNTI 95
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
IRG + +S IS FV ML SV P RLTYP V K+ A L G LH +VK G+
Sbjct: 96 IRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGL 155
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E D F++ + MY G A +VFDE V+
Sbjct: 156 EKDQFIQNTIIYMYANSGLLSEARRVFDEL----------------------------VD 187
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
L +V + S+I G + G++ K+ LF+ MP + V+W +MI+G+ +N +A
Sbjct: 188 L-------DVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEA 240
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L +F +M V ++FT+VS LSACA +GAL+ G VH+Y+ F L + TA++DM
Sbjct: 241 LELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDM 300
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y KCG I A VF + + L W ++I GLA++G +AI+YF K+ S +PD F
Sbjct: 301 YCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSF 360
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +LTAC Y G V A ++F M Y IEPS+KH+T +V +L + +++A I MP
Sbjct: 361 IGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMP 420
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
DF+IWG+L +CR H + +IAK A Q C LN S
Sbjct: 421 LKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPS 457
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 142/347 (40%), Gaps = 30/347 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ + II + +S + R++ +++ ++ A + + L + KS +F
Sbjct: 158 DQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKS----RRLF 213
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D+ + +N +I G N + F M V P+ T + + A L L
Sbjct: 214 DNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALK 273
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H + + E + V + DMY + G A +VF+ +P + S WN +I
Sbjct: 274 HGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLS----CWNSII 329
Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP----- 257
G + GY RKA+E F + K + S++ ++ G + KA + F M
Sbjct: 330 IGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEI 389
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVGALEAGV 316
E + +T M+ Q E+A Q++ DF + S LS+C K G +E
Sbjct: 390 EPSIKHYTCMVEVLGQAALLEEA----EQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAK 445
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
R + + A G L+ N++AAS F E E+ +L
Sbjct: 446 RAAQRVC--ELNPSDASGYLLMS------NVQAASNQFEEAMEQRIL 484
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 255/462 (55%), Gaps = 41/462 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQLISSASLHKSIDYALS 84
N+ H++ + S +QL +I AQII + + I + I +S H ++ +++
Sbjct: 20 NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79
Query: 85 IFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS--KSVAS 141
IF+HF N+ +N L++ ++++ + + IS+F L L PN Y F S K+ A
Sbjct: 80 IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L+ + G+ +HC + K G E + FVR L D+Y ++G A K+FDE
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE------------ 187
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
M ++V SW +LI G+ G + KA +F+ M EK +
Sbjct: 188 -----------------------MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL 224
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VSW+ MI+G+++N + A+ +F QM + G+ ND T+VS LSACA +GAL+ G +H
Sbjct: 225 VSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 284
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+I N + +G AL DMYAKCG + A VF E E+D+++W+ +I GLA++G +
Sbjct: 285 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 344
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A +F +M+ G EP+ F+ +LTAC ++G V L +FD M Y I P ++H+ VV
Sbjct: 345 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 404
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+LLSR G++D+A + IN MP P+ ++WGAL CR +KD +
Sbjct: 405 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 18/293 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
LIS +D A +FD KNL ++ +I G A N + I F M + P
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAP 258
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N +T V + A L L LG+ +H I ++ +E F+ LADMY + G A VF
Sbjct: 259 NDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVF 318
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRK 243
E E++ V+ W+++I G + GY +A F M + N S++ L+
Sbjct: 319 HEMHERD----VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHA 374
Query: 244 GDLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G + K E F+ MP+ + + +++ S+ G ++A ++ M ++ N
Sbjct: 375 GLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM---PMQPNVIV 431
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ L C E G RV I D G++ L ++YA G ++ A+
Sbjct: 432 WGALLGGCRIYKDAERGERVVWRILELDSNHSGSL-VYLANVYASMGRLDDAA 483
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 161/470 (34%), Positives = 250/470 (53%), Gaps = 48/470 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E II+ + + + + L + H + L SS + TQ++ + H +A +F
Sbjct: 10 EDAIIARLRTCATFRDLLRAHGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIP 69
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP--------NRLTYPFVSKSVASL 142
NLH+ N +I+ A+N + + +V MLR P +R TYPF+ K+ +L
Sbjct: 70 APNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGAL 129
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ LGR +H + +SG E A V+ L +MY +
Sbjct: 130 AASRLGRQVHAHVARSGCESHAVVQNSLIEMYTR-------------------------- 163
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
C + RKA F M +K+V SW +LI R G +++A ELF MP+K VV
Sbjct: 164 ------CGDLSTARKA---FDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVV 214
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWTA+++G++ G+ A+ +F M G +D ++V+ L ACA++GALE G ++ Y
Sbjct: 215 SWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAY- 273
Query: 323 SCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
C+ G+ G I AL++MYAKCG IE A +F EKD+++W+ I GLA HGR +
Sbjct: 274 -CSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRARE 332
Query: 381 AIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
A++ F+ M G P+G F+ +L+AC ++G V L + D M+ DY +EP V+H+ V
Sbjct: 333 AVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCV 392
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
V+LL R G++ +AL+ I MP PD IWG+L ACR+H D + A +A +
Sbjct: 393 VDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAE 442
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/457 (34%), Positives = 249/457 (54%), Gaps = 8/457 (1%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPK 92
I+ +IH+ + K L+ IHA++++ + ASS + +L+ S + DYA +FD T
Sbjct: 5 ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N +++ LI G EN + S F+ M R + T V K++A L+ G+ ++
Sbjct: 65 NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
E D + Y + A K FD PE+N V+ W +I G K
Sbjct: 125 GFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERN----VVSWTSMICGYVKA 180
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGF 271
G + +A LF MP K++ASW ++ G+M GD LF+QMP K +V+W+ MI G+
Sbjct: 181 GDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGY 240
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-HNYISCNDFGLK 330
++NG+ KAL +F + + ++ ++ ++ +SAC+++G ++A + HNY+ +
Sbjct: 241 ARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-D 299
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ T+L+DMYAKCG+IE A +F KDLL ++ MI LA HG AI F KM
Sbjct: 300 LRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQR 359
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+ +PD FL +LTAC + G V +F M ++ I+PS KH+ VV+LL RVG ++
Sbjct: 360 ANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE 419
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+A N I MP P V+WGAL ACR H + ++A++A
Sbjct: 420 EAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVA 456
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 254/460 (55%), Gaps = 27/460 (5%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T + I +L+ + +T L Q+HA+II L I +Q ++ + + Y S+F+
Sbjct: 72 TTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 131
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ + ++N I+G +EN +S F+ M R P++ TYP + K+ + + + G
Sbjct: 132 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 191
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
H V+ GV D FV L D+Y + G+ A KVFDE E+N V+ W +I G
Sbjct: 192 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN----VVSWTAMIAGY 247
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAM 267
+ L +A +LF MP+KN SW ++I G+++ GDL+ A ++F++MP + VV+W+A+
Sbjct: 248 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSAL 307
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+G V+ ++F +VS +SAC+++G+LE V +Y+ +
Sbjct: 308 ISG--------------------NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI 347
Query: 328 GLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ A + AL+DM AKCG+++ A+ +F E ++DL+++ +M+ GL+IHG QA+ F
Sbjct: 348 DVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFS 407
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M+ G PD F ILTAC +G V +F+SM+ DY I PS H+ +V+LL R
Sbjct: 408 RMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRA 467
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
G++ +A + MP P WGAL AC+ H D ++ ++
Sbjct: 468 GRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 507
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 287/536 (53%), Gaps = 61/536 (11%)
Query: 15 PTTNIKSSHKPSNNIT-----ETH------IISLIHSSNSTKQLRQIHAQIILHNLFASS 63
PT+ + H P +N+ E H ++SLI S L+QIHAQ++++++ +
Sbjct: 6 PTSFLPPYHLPLSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPN 65
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN-SHFQSCISHFVFMLR 122
+ +++I K + YA +F+ T N++ FNV++RGLA + C+ + +
Sbjct: 66 FLLSKIIDL----KDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKS 121
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
L ++ N TYPF+ + ++ L G+ HCL+ K+G++ D +V L MY + G+
Sbjct: 122 LGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGF 181
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------- 228
A KVFDE +++ ++ WN +I+G SK+G+ ++A+ LF G P +
Sbjct: 182 ARKVFDEMGDRD----LVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLG 237
Query: 229 --------NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+ WV +LID + + GDL A +F+ MP K VV+
Sbjct: 238 ACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVT 297
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W A+I G++QNG + +A+ +F M +AG + T++ LSAC+ +GAL+ G V + S
Sbjct: 298 WNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHAS 357
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+ +AL+DMYAKCG+++ A VF K+ ++W AMI LA HG+ ++A+
Sbjct: 358 EKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALS 417
Query: 384 YFKKMMY-SGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
F++M +GT +P+ F+ +L+AC ++G V F+SM + + P V+H++ +V+
Sbjct: 418 LFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVD 477
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
L +R G + +A + I KMP PD ++ G+L AC+ ++ + + +Q + LS
Sbjct: 478 LCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELS 533
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 173/510 (33%), Positives = 263/510 (51%), Gaps = 41/510 (8%)
Query: 13 IAPTTNIKS-SHK-PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
I +T+++S SH P + I +L+ + + L Q+HA II L + I
Sbjct: 9 IPTSTSMRSISHSSPFRLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFI 68
Query: 71 SSA-SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
S A +L ++ YA S+F + ++N LI+ + + F +S F M P+
Sbjct: 69 SRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDS 128
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
TYP V K+ + G+ LH + GV+ D +V L DMY + G+ A KVFD
Sbjct: 129 FTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDG 188
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
++N V+ W ++ G +G + +A +LF MP +NVASW S++ GF++ GDL A
Sbjct: 189 MSDRN----VVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGA 244
Query: 250 GELFEQMPEKGVVS-------------------------------WTAMINGFSQNGEAE 278
+F+ MPEK VVS W+A+I+G+ QNG
Sbjct: 245 RGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPN 304
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS--CNDFGLKGAIGTA 336
+AL +F +M V+ ++F +VS +SA A++G LE V +Y+S C D I A
Sbjct: 305 QALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA-A 363
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DM AKCGN+E A +F E +D++ + +MI GL+IHGR E+A+ F +M+ G PD
Sbjct: 364 LLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPD 423
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F ILTAC +G V N+F SM+ Y I P H+ +V+LLSR G + A I
Sbjct: 424 EVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELI 483
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+P P WGAL AC+ + D+++ +I
Sbjct: 484 KLIPWEPHAGAWGALLGACKLYGDSELGEI 513
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 176/534 (32%), Positives = 269/534 (50%), Gaps = 85/534 (15%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
+SL+H + + LR IHAQ+I L ++ ++L+ L D YA+S+FD
Sbjct: 6 LSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQE 65
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
L I+N + RG A +S S + +V M+ L + PN T+PF+ KS A G+ L
Sbjct: 66 PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGK---------------------------TRG-- 182
H ++K G + D ++ L MYVQ G+ +RG
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXI 185
Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------- 231
A K+FDE P K+ V+ WN I+G ++ G ++A+ELF M K NV
Sbjct: 186 ESAHKMFDEIPVKD----VVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241
Query: 232 -----------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGV 261
SW+ +LID + + G+L+ A LF+ + K V
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SW +I G++ ++AL +F ML +G + ND T++S LSACA +GA++ G +H Y
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361
Query: 322 ISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
I D LKG ++ T+L+DMYAKCG+IEAA VF + L +W AMI+G A+HG
Sbjct: 362 I---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
R A F +M +G EPD F+ +L+AC +SG + L + F SM DY + P ++H+
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+++L G +A IN M PD VIW +L AC+ H + ++ + Q+
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 532
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 164/379 (43%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + I+ A +FD K++ +N I G AE +++ + F M++ +VR
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGL 292
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 293 FQGLSNKD----VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAH 348
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F+ M + + SW
Sbjct: 349 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A A +F +M G+ +D T V LSAC+ G L+ G + ++
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT-R 467
Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D+ L + ++D+ G EA ++ E D + W +++ +HG E
Sbjct: 468 DYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGE 527
Query: 383 QYFKKMMYSGTEPDGTVFL 401
Y + ++ E G+ L
Sbjct: 528 SYAQNLIKIEPENPGSYVL 546
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 25/311 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H+ I H + +I LI S
Sbjct: 227 MKTNVRPDESTMVT-VLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F + K++ +N LI G + ++ + F MLR +PN +T + +
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VFD ++ S
Sbjct: 346 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G A ++F M K + ++V L+ G L +
Sbjct: 406 S----WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHI 461
Query: 253 FEQMPEK-----GVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFTVVSALS 304
F M + + MI+ +G EAEK + +M GV S L
Sbjct: 462 FRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINT-MEMEPDGV-----IWCSLLK 515
Query: 305 ACAKVGALEAG 315
AC G +E G
Sbjct: 516 ACKMHGNVELG 526
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 254/476 (53%), Gaps = 32/476 (6%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
LI S + L Q HA II L I + +S + S+ Y+ SIF+ + +
Sbjct: 15 LIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLS---ISTSVSYSTSIFNRLLNPSTFL 71
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N+L++ ++NS F S F M + ++ TYP + K ++ L G +H
Sbjct: 72 YNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSA 131
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------------- 194
++ GV D +V L Y + + A KVFDE PE+N
Sbjct: 132 IRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAK 191
Query: 195 ------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
++ WN +I+G K G L A ++F M ++NV S+ +IDG+ + GD+
Sbjct: 192 RVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMAS 251
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF++ PEK VV+W+A+I+G+S+N + +A+ +FF+M+ V+ ++F +VS +SAC++
Sbjct: 252 ARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQ 311
Query: 309 VGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+G + V +Y+S + A + AL+DM+AKCGN+E A +F + +DL+ +
Sbjct: 312 LGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCS 371
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I GL+IHGR +A++ F +M+ G PD F ILTAC G ++ +FFD+M+ Y
Sbjct: 372 LIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKY 431
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+ PS H+ +V+LLSR GQ+ A + + MP P WGAL AC+ H D ++
Sbjct: 432 SVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVEL 487
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 263/473 (55%), Gaps = 44/473 (9%)
Query: 29 ITETHIISLIHSSNST-KQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYAL 83
I+ +S++ +T + L+Q HA +I FA+SRI L AS ++DYA
Sbjct: 21 ISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIESFAASRI---LAFCASPLGNMDYAY 77
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASL 142
+F NL +N +IRG +++S+ Q + F+ ML S V P RLTYP + K+ + L
Sbjct: 78 LVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQL 137
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L G LH I+K G+++D F+R + MY
Sbjct: 138 GLAHDGAQLHGRIIKLGLQFDPFIRNTILYMY---------------------------- 169
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+ G+L +A +F + +V SW S+I G + G++ ++ +LF++MP K +
Sbjct: 170 -------ATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPI 222
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW +MI G+ +NG ++AL +F +M + ++ ++FT+VS L+A A++GAL GV +H YI
Sbjct: 223 SWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYI 282
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
N+ L + TA++DMY KCG+I A VF + + L +W +MI+GLA++G ++AI
Sbjct: 283 KKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAI 342
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
FK + S +PD F+A+LTAC + V + FF M+ Y IEPS+KH+ ++V++
Sbjct: 343 LVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDM 402
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+SR G +++A FI MP D +IWG L ACR + +T++AK A + L+
Sbjct: 403 ISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELD 455
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 171/527 (32%), Positives = 269/527 (51%), Gaps = 71/527 (13%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
+SL+H+ + + LR IHAQ+I L ++ ++LI L D YA+S+F+
Sbjct: 6 LSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQE 65
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
NL I+N + RG A +S S + +V M+ L + PN T+PF+ KS A G+ +
Sbjct: 66 PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
H ++K G + D +V L MYVQ G+ A KVFD++ ++
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 185
Query: 195 ----------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
+ V+ WN +I+G ++ G ++A+ELF M K NV
Sbjct: 186 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 245
Query: 232 -------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
SW+ +LID +++ G+++ A LFE + K V+SW
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+I G++ ++AL +F +ML +G ND T++S L ACA +GA+E G +H YI+
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365
Query: 326 DFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
G+ A T+L+DMYAKCG+IEAA VF + L +W AMI+G A+HGR A
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M + EPD F+ +L+AC +SG + L + F SM+ DY I P ++H+ +++LL
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
G +A IN M PD VIW +L AC+ + + ++ + Q+
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQN 532
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/436 (21%), Positives = 176/436 (40%), Gaps = 80/436 (18%)
Query: 41 SNSTKQLRQIHAQII---------LHNLFASSRIT----------------------TQL 69
S + ++ +QIH ++ +H S + T L
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 175
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
I+ + I A +FD K++ +N +I G AE + + + F M++ +VRP+
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 235
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T V + A + + LGR +H I G + + L D+Y++ G+ A +F+
Sbjct: 236 STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEG 295
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--------------------- 228
K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 296 LSYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351
Query: 229 -NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+ W+ SLID + + GD++ A ++F+ + + + SW AMI
Sbjct: 352 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 411
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
GF+ +G A A +F +M + +D T V LSAC+ G L+ G + + D+
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK-EDYK 470
Query: 329 LKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + ++D+ G EA ++ E D + W +++ ++ E Y
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYA 530
Query: 386 KKMMYSGTEPDGTVFL 401
+ ++ + G+ L
Sbjct: 531 QNLIKIEPKNPGSYVL 546
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H+ I H ++ +I LI
Sbjct: 227 MKTNVRPDES-TMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ + K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 286 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 345
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + R L DMY + G A +VFD ++ S
Sbjct: 346 CAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLS 405
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G A ++F M K + ++V L+ G L +
Sbjct: 406 S----WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 461
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M E ++ + MI+ +G ++A M M + + S L AC
Sbjct: 462 FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACK 518
Query: 308 KVGALEAG 315
+E G
Sbjct: 519 MYANVELG 526
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 269/491 (54%), Gaps = 10/491 (2%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYALSIF 86
T I+S + S +++Q HA ++ LF + ++L++ A+ + K++ YA SI
Sbjct: 38 TPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSIL 97
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ N N +IR A +S + ++ F ML V P++ ++ FV K+ A+
Sbjct: 98 NRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFE 157
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H L +KSG+ D FV L ++Y + G A KV D P ++ + WN L+
Sbjct: 158 EGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD----AVSWNSLL 213
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G + +A LF M ++NV SW +I G+ G +K+A E+F+ MP + VVSW A
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ ++ G + L +F +MLD D FT+VS LSACA +G+L G VH YI +
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++G + TALVDMY+KCG I+ A VF T ++D+ TW ++I L++HG + A++ F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+Y G +P+G F+ +L+AC + G + A F+ M Y +EP+++H+ +V+LL R
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGR 453
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
+G++++A +N++P ++ +L AC+ + A+ LNL + Y
Sbjct: 454 MGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--DSSGYA 511
Query: 506 QTFMQQKGDGR 516
Q DGR
Sbjct: 512 QMSNLYASDGR 522
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 246/461 (53%), Gaps = 50/461 (10%)
Query: 79 IDYALSIFD---HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+DY+ IF H + + I+N +IRG A N FQ CI F M + ++P+ TYP+V
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVE-------------------YDA---------FVR 167
S L G+ +HC IVKSG E +D + R
Sbjct: 61 INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120
Query: 168 VHLADM--------------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
DM YV +G + A ++FD PE++ ++ WN +I G +K G
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERD----IVSWNSMILGYAKGG 176
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ A LF MP+KNV SW S+I + DL+ A FE MP++ VVSW +MI+ +++
Sbjct: 177 KVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAK 236
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+G+ ++L +F QM GV + +T VS LSAC+ +G LE G +H Y+S + + +
Sbjct: 237 HGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMV 295
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
GTAL +MYA+CG+++ A VF + ++D+ W +I LA+HGR E+AI+ F M +G
Sbjct: 296 GTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGL 355
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
+P+ F + L AC + G V+ F+SM DY I P + H+ ++++L R GQ+++A+
Sbjct: 356 KPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAM 415
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
+ MP PD IWGAL CR D K+A+ ++ + +
Sbjct: 416 LLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEM 456
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 85/204 (41%), Gaps = 13/204 (6%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L + +D A ++F +++ +NV+I+ LA + + I F+ M +
Sbjct: 295 VGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTG 354
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKT 180
++PN T+ + + L+ G H + +Y ++ L DM + G+
Sbjct: 355 LKPNDFTFTSALFACSHGGLVEEG---HIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQL 411
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR---KAVELFGMMPKKNVASWVSLI 237
A + ++ P + V +W L+ GC G L+ K VE M +V L
Sbjct: 412 EEAMLLVEDMPFQ---PDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLS 468
Query: 238 DGFMRKGDLKKAGELFEQMPEKGV 261
+ G +A + ++M EK +
Sbjct: 469 NIHASAGQWIEAADARKKMDEKKI 492
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 269/527 (51%), Gaps = 81/527 (15%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTP 91
ISL+ S S QL+QI A I L R T + + S+ S+ +YA IF++
Sbjct: 12 ISLLKSCKSMSQLKQIQAHIFCVGL-QQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHD 70
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+L I+N++I+ ++ F+S IS F + V P+ TYP+V K + + + G +
Sbjct: 71 PSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKV 130
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H +VK+G+E+D +V DMY +LG G +VF+E P+++ + WN++I+G +
Sbjct: 131 HAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRD----AVSWNIMISGYVR 186
Query: 212 IGYLRKAVELFGMM-----PKKNVASWVS------------------------------- 235
+AV+++ M K N A+ VS
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIM 246
Query: 236 ---LIDGFMRKGDLKKAGELFEQM-------------------------------PEKGV 261
L+D + + G + A E+F+ M P + +
Sbjct: 247 GNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDI 306
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
V WTAMING+ Q E+ +A+F +M GV+ + F VV+ L+ CA+ GALE G +HNY
Sbjct: 307 VLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNY 366
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N + +GTAL++MYAKCG IE + +F KEKD +WT++I GLA++G+ +A
Sbjct: 367 IDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEA 426
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ FK M G +PD F+A+L+AC ++G V+ F SM Y IEP+++H+ ++
Sbjct: 427 LELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFID 486
Query: 442 LLSRVGQVDKALNFINKMPETPDFVI---WGALFCACRTHKDTKIAK 485
LL R G + +A + K+P + +I +GAL ACRT+ + + +
Sbjct: 487 LLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGE 533
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 14/221 (6%)
Query: 1 MKGHV-FNRLTTAIAPTTNIK-SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
+ G+V FNR IA ++ KP I T +++ S + +Q + IH I +
Sbjct: 313 INGYVQFNRFEETIALFGEMQIRGVKPDKFIVVT-LLTGCAQSGALEQGKWIHNYIDENR 371
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+ + + T LI + I+ + IF+ K+ + +I GLA N + F
Sbjct: 372 IKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFK 431
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVE-----YDAFVRVHLAD 172
M ++P+ +T+ V + + L+ GR L H + +E Y F+ D
Sbjct: 432 AMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFI-----D 486
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ + G + A ++ + P +N V L+ L++ C G
Sbjct: 487 LLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYG 527
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 248/469 (52%), Gaps = 47/469 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E +++ + + + + L ++H ++ + SS + TQ++ + H+ + +A +F
Sbjct: 14 EDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVR 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-------NRLTYPFVSKSVASLS 143
NLH+ N +I+ A+N + ++ ++ MLR P +R TYPF+ K+ +
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTA 133
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LG+ +H +V+SG + A V+ L +MY + G A KVFDE E++ V+ WN
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD----VVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+LI+ +++G +RKA LF MP K + +W +++ G+ GD A + F M +
Sbjct: 190 MLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE---- 245
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
G +D ++V+ L ACA++GALE G ++ Y
Sbjct: 246 ---------------------------GFEPDDVSIVAVLPACAQLGALELGRWIYAY-- 276
Query: 324 CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
C G+ + I AL++MYAKCG I+ A +F +KD+++W+ +I GLA HGR +A
Sbjct: 277 CKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEA 336
Query: 382 IQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M G P+ F+ +L+AC Y+G V L+ FD M Y +EP V+H+ VV
Sbjct: 337 VWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVV 396
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+LL R GQ+ +AL+ + MP D +WG+L ACR+H D A +A +
Sbjct: 397 DLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 132/341 (38%), Gaps = 48/341 (14%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T+ H + T ++ + + + +Q+H ++ +S+ + LI +
Sbjct: 108 TSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA 167
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLI-------------------------------RGLA 105
+ A +FD +++ +N+LI G
Sbjct: 168 GDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F M P+ ++ V + A L L LGR ++ + G+
Sbjct: 228 TVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTH 287
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L +MY + G A ++FD +K+ V+ W+ +I G + G +AV LF M
Sbjct: 288 ICNALMEMYAKCGCIDQALQLFDGMADKD----VISWSTVIGGLAAHGRAHEAVWLFTEM 343
Query: 226 PKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG 275
K+ NV ++V L+ G + + F++M E GV + +++ ++G
Sbjct: 344 EKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSG 403
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
+ +AL + M V A+ S LSAC G ++ V
Sbjct: 404 QIRRALDLVRDM---PVPADAKVWGSLLSACRSHGDVDTAV 441
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/526 (31%), Positives = 265/526 (50%), Gaps = 79/526 (15%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
ISL+ S S QL+QI A I L I +L+ S S +YA IF+H
Sbjct: 12 ISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHP 71
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+L I+N++I+ + +S IS F + V P+ TYP+V K + + + G +H
Sbjct: 72 SLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIH 131
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+VK+G+E+D +V L DMY +LG G +VF+E PE++ + WN++I+G +
Sbjct: 132 AFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERD----AVSWNIMISGYVRC 187
Query: 213 GYLRKAVELFGMM-----PKKNVASWVS-------------------------------- 235
+AV+++ M K N A+ VS
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMG 247
Query: 236 --LIDGFMRKGDLKKAGELFEQM-------------------------------PEKGVV 262
L+D + + G + A E+F+ M P + VV
Sbjct: 248 NALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVV 307
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
WTAMING+ Q E A+A+F +M GV + F VV+ L+ CA++GALE G +HNYI
Sbjct: 308 LWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYI 367
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
N + + TAL++MYAKCG IE + +F K+ D +WT++I GLA++G+ +A+
Sbjct: 368 DENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEAL 427
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F+ M G +PD F+A+L+AC ++G V+ F SM Y IEP+++H+ ++L
Sbjct: 428 ELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDL 487
Query: 443 LSRVGQVDKALNFINKMPETPDFVI---WGALFCACRTHKDTKIAK 485
L R G + +A + K+P+ + +I +GAL ACRT+ + + +
Sbjct: 488 LGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGE 533
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/540 (30%), Positives = 272/540 (50%), Gaps = 70/540 (12%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N + ++P+ N + ISLI S +QL+Q H +I F+ ++L + A+L
Sbjct: 17 NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76
Query: 78 --SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
S++YA +FD N +N LIR A I F+ M+ S PN+ T+PF
Sbjct: 77 FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHLAD 172
+ K+ A +S LSLG+ LH + VKS V D F + D
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 173 M---------YVQLGKTRGAFKVFDETP-------------------------------- 191
+ +VQ G A ++F +
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 192 --EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D +
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
A E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSACA
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+VGALE G +H+YI + + + +AL+ MY+KCG++E + VF +++D+ W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M +Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P KH+ +V++L R G ++KA+ FI MP P +WGAL AC+ H + +A++A
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 11/250 (4%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALS 304
L+ A ++F+++P+ +W +I ++ + ++ F M+ ++ N +T +
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A A+V +L G +H + G + +L+ Y CG++++A VF KEKD+++
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +MI G G ++A++ FKKM + + +L+AC K+ F
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC-----AKIRNLEFGRQV 254
Query: 425 FDYFIEPSVKHHTVVVN----LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
Y E V + + N + ++ G ++ A + M E D V W + +D
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISED 313
Query: 481 TKIAKIALQS 490
+ A+ L S
Sbjct: 314 YEAAREVLNS 323
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 9/240 (3%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT +S + + R IH+ I H + + +T+ LI S ++ + +F
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ +++ +++ +I GLA + + F M +V+PN +T+ V + + L+
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L H + G+ + + D+ + G A K + P S +W L
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP---IPPSTSVWGAL 540
Query: 206 INGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ C L A L + P +N + V L + + + G + EL + M G+
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEP-RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 248/469 (52%), Gaps = 47/469 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E +++ + + + + L ++H ++ + SS + TQ++ + H+ + +A +F
Sbjct: 14 EDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVR 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-------NRLTYPFVSKSVASLS 143
NLH+ N +I+ A+N + ++ ++ MLR P +R TYPF+ K+ +
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTA 133
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LG+ +H +V+SG + A V+ L +MY + G A KVFDE E++ V+ WN
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD----VVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+LI+ +++G +RKA LF MP K + +W +++ G+ GD A + F M +
Sbjct: 190 MLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE---- 245
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
G +D ++V+ L ACA++GALE G ++ Y
Sbjct: 246 ---------------------------GFEPDDVSIVAVLPACAQLGALELGRWIYAY-- 276
Query: 324 CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
C G+ + I AL++MYAKCG I+ A +F +KD+++W+ +I GLA HGR +A
Sbjct: 277 CKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEA 336
Query: 382 IQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M G P+ F+ +L+AC Y+G V L+ FD M Y +EP V+H+ VV
Sbjct: 337 VWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVV 396
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+LL R GQ+ +AL+ + MP D +WG+L ACR+H D A +A +
Sbjct: 397 DLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 132/341 (38%), Gaps = 48/341 (14%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T+ H + T ++ + + + +Q+H ++ +S+ + LI +
Sbjct: 108 TSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA 167
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLI-------------------------------RGLA 105
+ A +FD +++ +N+LI G
Sbjct: 168 GDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F M P+ ++ V + A L L LGR ++ + G+
Sbjct: 228 TVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTH 287
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L +MY + G A ++FD +K+ V+ W+ +I G + G +AV LF M
Sbjct: 288 ICNALMEMYAKCGCIDQALQLFDGMADKD----VISWSTVIGGLAAHGRAHEAVWLFTEM 343
Query: 226 PKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG 275
K+ NV ++V L+ G + + F++M E GV + +++ ++G
Sbjct: 344 EKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSG 403
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
+ +AL + M V A+ S LSAC G ++ V
Sbjct: 404 QIRRALDLVRDM---PVPADAKVWGSLLSACRSHGDVDTAV 441
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 176/523 (33%), Positives = 270/523 (51%), Gaps = 73/523 (13%)
Query: 35 ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLHKSIDYALSIFDHFT 90
+SL+H+ + + LR IHAQ+I LHN +A SR+ I S + + YA+S+F+
Sbjct: 6 LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNF-DGLPYAISVFETIQ 64
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
NL I+N + RG A +S S I +V M+ L + PN T+PF+ KS A L + G+
Sbjct: 65 EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD---------------------- 188
+H ++K G E D +V L MYV+ G+ + A KVFD
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY 184
Query: 189 -ETPEKNKSE----SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------ 231
E+ +K E V+ WN +I+G + G ++A++LF M K NV
Sbjct: 185 IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSA 244
Query: 232 --------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
SW+ +LID + + G+++ A LF+ + K V+SW
Sbjct: 245 CAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISW 304
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
MI G++ ++AL +F +ML +G ND T++S L ACA++GA++ G +H YI
Sbjct: 305 NTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDK 364
Query: 325 NDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
G+ A + T+L+DMYAKCG+IEAA VF + L AMI+G A+HGR A
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAF 424
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F +M +G EPD F+ +L+AC +SG + L F SM +Y I P ++H+ +++L
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDL 484
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
L +G +A IN M PD VIW +L AC+ H + ++ +
Sbjct: 485 LGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGE 527
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 130/308 (42%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ KP + T ++S S S + RQ+H+ I H L ++ +I LI S
Sbjct: 227 MKTNVKPDESTMVT-VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGE 285
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F + K++ +N +I G + ++ + F MLR PN +T + +
Sbjct: 286 VETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPA 345
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + GR +H I K GV + +R L DMY + G A +VF+ + S
Sbjct: 346 CAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLS 405
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
N +I G + G A ++F M K + ++V L+ G L +
Sbjct: 406 AC----NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRI 461
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M + ++ + MI+ G ++A M M + + S L AC
Sbjct: 462 FRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMT---MEPDGVIWCSLLKACK 518
Query: 308 KVGALEAG 315
G +E G
Sbjct: 519 MHGNVELG 526
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/495 (32%), Positives = 250/495 (50%), Gaps = 46/495 (9%)
Query: 35 ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+S+I + S L R++H II + + T L S + S++ A +FD
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPK 183
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+++ +N +I G ++N ++ F M ++PN T V A L L G+ +
Sbjct: 184 RDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI 243
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
HC ++SG+E D V L +MY + G A K+F+ P ++ V WN +I G S
Sbjct: 244 HCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRD----VASWNAIIGGYSL 299
Query: 212 IGYLRKAVELFGMMP----KKNVASWVS-------------------------------- 235
+A+ F M K N + VS
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359
Query: 236 ---LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
L++ + + G++ A +LFE+MP+K VV+W A+I+G+SQ+G +ALA+F +M G+
Sbjct: 360 GNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGI 419
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ + F +VS L ACA ALE G ++H Y + F +GT LVD+YAKCGN+ A
Sbjct: 420 KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQK 479
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
+F E+D+++WT MI IHG E A+ F KM +GT+ D F AILTAC ++G
Sbjct: 480 LFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGL 539
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V L +F M+ DY + P ++H+ +V+LL R G +D+A I M PD +WGAL
Sbjct: 540 VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599
Query: 473 CACRTHKDTKIAKIA 487
ACR H + ++ + A
Sbjct: 600 GACRIHCNIELGEQA 614
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 141/482 (29%), Positives = 221/482 (45%), Gaps = 71/482 (14%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N ++ I G +N + + + M R + P++L + V K+ S S L GR +H
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
I+ G E D V LA MY + G A +VFD P+++ V+ WN +I G S+
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRD----VVSWNAIIAGYSQN 199
Query: 213 GYLRKAVELFGMMP----KKNVASWVS--------------------------------- 235
G +A+ LF M K N ++ VS
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259
Query: 236 --LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
L++ + + G++ A +LFE+MP + V SW A+I G+S N + +ALA F +M G++
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIK 319
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N T+VS L ACA + ALE G ++H Y + F +G ALV+MYAKCGN+ +A +
Sbjct: 320 PNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKL 379
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F +K+++ W A+I G + HG +A+ F +M G +PD +++L AC +
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF--- 436
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQVDKALNFINKMPETPDFVIWG 469
LAL + Y I + + VV V++ ++ G V+ A +MPE D V W
Sbjct: 437 -LALEQGKQIH-GYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ-DVVSWT 493
Query: 470 ALFCACRTH------------------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511
+ A H K IA A+ ++CS + Q + Y Q
Sbjct: 494 TMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD 553
Query: 512 KG 513
G
Sbjct: 554 YG 555
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 191/412 (46%), Gaps = 53/412 (12%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q +QIH I + + + L++ + +++ A +F+ +++ +N +I G
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
+ NS ++ F M ++PN +T V + A L L G+ +H ++SG E +
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-- 222
V L +MY + G A+K+F+ P+KN V+ WN +I+G S+ G+ +A+ LF
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPKKN----VVAWNAIISGYSQHGHPHEALALFIE 413
Query: 223 ----GMMP---------------------------------KKNVASWVSLIDGFMRKGD 245
G+ P + NV L+D + + G+
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGN 473
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+ A +LFE+MPE+ VVSWT MI + +G E ALA+F +M + G + + + L+A
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTA 533
Query: 306 CAKVGALEAGVRVHNYISC--NDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEK 360
C+ G ++ G++ Y C +D+GL + LVD+ + G++ EA ++ + E
Sbjct: 534 CSHAGLVDQGLQ---YFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEP 590
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
D W A++ IH E Q K + +PD + +L+ + Q
Sbjct: 591 DANVWGALLGACRIHCNIELGEQAAKHLFE--LDPDNAGYYVLLSNIYAEAQ 640
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 163/456 (35%), Positives = 237/456 (51%), Gaps = 41/456 (8%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+L+QI A + + + T QLI S SI YA +FD + ++N LI+ +
Sbjct: 3 RLKQIQAYTLRNGI----EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYS 58
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ C S + M PN ++ F+ + ASLS GR LH VKSG D F
Sbjct: 59 SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVF 118
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
L DMY +K+G L A + F M
Sbjct: 119 ALTALVDMY-----------------------------------AKLGLLSLARKQFDEM 143
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
++V +W S+I G+ R GDL+ A ELF MP + V SWTAMI+G++QNG+ KAL+MF
Sbjct: 144 TVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFL 203
Query: 286 QMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M + +R N+ T+ S L ACA +GALE G R+ Y N + + AL++MYA+C
Sbjct: 204 MMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARC 263
Query: 345 GNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G I+ A VF E ++L +W +MI GLA+HGR ++AI+ F KM+ G PD F+ +
Sbjct: 264 GRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V +FF+SM D+ I P ++H+ +V+LL R G++ +A + I +MP P
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEP 383
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
D V+WG L AC H ++A+ A + L S P
Sbjct: 384 DSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNP 419
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 257/473 (54%), Gaps = 43/473 (9%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--S 72
PT+ + S +N +T + L+ ++ ++LRQIH Q++ L ++L++ +
Sbjct: 8 PTSQLSSE----SNAAQT--LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ S+ YA ++FD N ++N +IRG + + + + + ML SV N T+
Sbjct: 62 SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
PF+ K+ +S+S L + +H I+K G + +
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT------------------------- 156
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
N L+N SK G ++ A LF + +++ SW S+IDG+ + G+++ A E+
Sbjct: 157 ----------NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F MPE+ ++SWT+MI+G G+ ++AL +F +M AG++ ++ +VS L ACA +G L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+ G +H YI ++ + +G L+DMYAKCG++E A VF + +EK + WTAMI G
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
AIHGR +A+++F KM +G EP+ F ILTAC ++G V A F+SM + +PS
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++H+ +V+LL R G + +A I MP P+ IWGAL AC H + ++ K
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 229/401 (57%), Gaps = 7/401 (1%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M++ V P T+ + K+ + +S L G +H I K G + FV+ L D Y GK
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A +VFDE E++ V W +I+ ++ G + A +LF MP +N ASW ++IDG
Sbjct: 61 IVEARRVFDEMSERD----VFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDG 116
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ R +++ A LF QMP + ++SWT MI +SQN + +ALA+F +M G+ ++ T+
Sbjct: 117 YSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTM 176
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
+ +SACA +GAL+ G +H Y F L IG+AL+DMYAKCG+++ + +VF + ++
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK 236
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
K+L W ++I GLA+HG E+A+ F +M +P+G F+++L AC ++G V+
Sbjct: 237 KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKR 296
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM D+ I P ++H+ +V+LL + G ++ AL + M P+ VIWGAL C+ H+
Sbjct: 297 FLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHR 356
Query: 480 DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ KIA++A+ S L P Y + + W E
Sbjct: 357 NLKIAQVAVNESKVLE---PNNSGYYTLLVNMYAEVNRWSE 394
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 146/359 (40%), Gaps = 41/359 (11%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
T +IS+ + RQ+ ++ + N + +I S ++++ A +F
Sbjct: 80 TTMISVHARTGDMSSARQLFDEMPVRNTAS----WNAMIDGYSRLRNVESAELLFSQMPN 135
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+++ + +I ++N F+ ++ F M + P+ +T + + A L L LG+ +
Sbjct: 136 RDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEI 195
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H ++ G + D ++ L DMY + G + VF + +KN + WN +I G +
Sbjct: 196 HLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKN----LFCWNSIIEGLAV 251
Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
GY +A+ +F M K N +++S++ G AG + E+G + +M
Sbjct: 252 HGYAEEALAMFSRMQREKIKPNGVTFISVL------GACTHAG-----LVEEGRKRFLSM 300
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV---GALEAGVRVHNYISC 324
FS E E M + AG+ + +V ++ GAL G ++H +
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360
Query: 325 NDFGL---------KGAIGTALVDMYA------KCGNIEAASLVFGETKEKDLLTWTAM 368
+ T LV+MYA + NI A G K +W M
Sbjct: 361 AQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEM 419
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
A+A ++++ + +T IIS + ++IH + I + LI
Sbjct: 157 ALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALID 216
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ S+D +L +F KNL +N +I GLA + + + ++ F M R ++PN +T
Sbjct: 217 MYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVT 276
Query: 132 YPFVSKSVASLSLLSLGR 149
+ V + L+ GR
Sbjct: 277 FISVLGACTHAGLVEEGR 294
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/459 (35%), Positives = 251/459 (54%), Gaps = 31/459 (6%)
Query: 35 ISLIHSSNSTKQLRQIHA----QIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+SL + ++ +++ Q+HA I ++ F SSR+ L S ++ + YA SIFD
Sbjct: 20 LSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLA-LYSDPKIN-DLGYARSIFDRIQ 77
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++L +N +I+ EN I F ++ P+ T P V K A L ++ G+
Sbjct: 78 RRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQ 136
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H L +K G D FV+ L +MY + G+ A KVFD +K+ V+LWN LI+G
Sbjct: 137 IHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD----VVLWNSLIDG-- 190
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
N+ SW ++I+G+M+ GD A ELF QMP +V+W MI G
Sbjct: 191 ------------------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ NG+ A+ MFF ML G R + T+VS LSA + + L G +H+Y+ N F L
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 292
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
G +GT+L++MYAKCG IE+A VF ++K + WTA+I GL IHG A+ F +M
Sbjct: 293 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCK 352
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+G +P+ +F+ +L AC ++G V +FD M +Y IEP+++H+ +V++L R G ++
Sbjct: 353 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLE 412
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+A N I MP +P+ VIW +L R H I + A Q
Sbjct: 413 EAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 451
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 250/458 (54%), Gaps = 40/458 (8%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFT 90
+++SL+ S +L+Q+HA +I L ++++ ++L S I+Y+ +F +
Sbjct: 16 NLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLS 75
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+ +N +IRG + + + +S F+ MLRL V P+ LTYPF+ K+ A L G
Sbjct: 76 SPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVS 135
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H I+K+G E D F++ L MY G + A KVFD
Sbjct: 136 VHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDS--------------------- 174
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ +KNV SW S++DG+ + G++ A + FE M EK V SW+++I+G
Sbjct: 175 --------------IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDG 220
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ + GE +A+A+F +M AG +AN+ T+VS ACA +GALE G ++ YI N L
Sbjct: 221 YVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLT 280
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ T+LVDMYAKCG IE A L+F + D+L W A+I GLA HG E++++ FK+M
Sbjct: 281 LVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEM 340
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PD +L +L AC + G VK A FF+S+ + P+ +H+ +V++L+R GQ
Sbjct: 341 QIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLS-KCGMTPTSEHYACMVDVLARAGQ 399
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ A FI +MP P + GAL C H++ +A+I
Sbjct: 400 LTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEI 437
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 167/543 (30%), Positives = 272/543 (50%), Gaps = 73/543 (13%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
PT ++ + SN T + LI + K L+Q+HA ++ LF T+L ++ +
Sbjct: 17 PTILTANNEQKSNPST---VPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACA 73
Query: 75 LHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLT 131
L S+DYA +FD NL+ +N LIR A + + F+ ML S R PN T
Sbjct: 74 LSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYT 133
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR---VH----LADM----------- 173
+PFV K+ +S L G+ +H +++K+ D F+ +H L D+
Sbjct: 134 FPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIV 193
Query: 174 -------------YVQLGKTRGAFKVFDETPEKNKSES---------------------- 198
+VQ G A ++F +N +
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW 253
Query: 199 -------------VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
++L N +++ K G L A LF M +K++ SW ++IDG+ + GD
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGD 313
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALS 304
A +F+ MP + + +W A+I+ + QNG+ ++ALA+F ++ L+ + N+ T+ S L+
Sbjct: 314 YDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLA 373
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA++GA++ G +H YI L I T+L+DMY+KCG++E A VF + +D+
Sbjct: 374 ACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFV 433
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W+AMI GLA+HG AI F KM + +P+ F +L AC +SG V FF+ MR
Sbjct: 434 WSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMR 493
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y + P KH+ +V++L R G +++A+ I KMP P +WGAL ACR + + ++A
Sbjct: 494 PVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELA 553
Query: 485 KIA 487
++A
Sbjct: 554 EMA 556
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 247/469 (52%), Gaps = 47/469 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E +++ + + + + L ++H ++ + SS + TQ++ + H+ + +A +F
Sbjct: 14 EDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVR 73
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-------NRLTYPFVSKSVASLS 143
NLH+ N +I+ A+N + ++ ++ MLR P +R TYPF+ K+ +
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTA 133
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LG+ +H +V+SG + A V+ L +MY + G A KVFDE E++ V+ WN
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD----VVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+LI+ +++G +RKA LF MP K + +W +++ G+ GD A + F M +
Sbjct: 190 MLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE---- 245
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
G +D ++V+ L ACA++G LE G ++ Y
Sbjct: 246 ---------------------------GFEPDDVSIVAVLPACAQLGTLELGRWIYAY-- 276
Query: 324 CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
C G+ + I AL++MYAKCG I+ A +F +KD+++W+ +I GLA HGR +A
Sbjct: 277 CKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEA 336
Query: 382 IQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M G P+ F+ +L+AC Y+G V L+ FD M Y +EP V+H+ VV
Sbjct: 337 VWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVV 396
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+LL R GQ+ +AL+ + MP D +WG+L ACR+H D A +A +
Sbjct: 397 DLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 132/341 (38%), Gaps = 48/341 (14%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T+ H + T ++ + + + +Q+H ++ +S+ + LI +
Sbjct: 108 TSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA 167
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLI-------------------------------RGLA 105
+ A +FD +++ +N+LI G
Sbjct: 168 GDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F M P+ ++ V + A L L LGR ++ + G+
Sbjct: 228 TVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTH 287
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L +MY + G A ++FD +K+ V+ W+ +I G + G +AV LF M
Sbjct: 288 ICNALMEMYAKCGCIDQALQLFDGMADKD----VISWSTVIGGLAAHGRAHEAVWLFTEM 343
Query: 226 PKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG 275
K+ NV ++V L+ G + + F++M E GV + +++ ++G
Sbjct: 344 EKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSG 403
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
+ +AL + M V A+ S LSAC G ++ V
Sbjct: 404 QIRRALDLVRDM---PVPADAKVWGSLLSACRSHGDVDTAV 441
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 177/548 (32%), Positives = 285/548 (52%), Gaps = 85/548 (15%)
Query: 21 SSHK--PSN-NITETHIIS-----LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
S+HK P++ N T T+++S L+ + S QL+QI AQ+IL L +++LIS
Sbjct: 35 STHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISF 94
Query: 73 ASLHKS--IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNR 129
++ +S +DY + I ++ N+ +N +IRG E+ + Q + + ML R RP+
Sbjct: 95 CAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDN 154
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
TY F+ K A+L L +G + ++K G + D ++ + M V +G++ A KVFDE
Sbjct: 155 YTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDE 214
Query: 190 TPEKNKSESVLLWNVLING-----------------------------------CSKIGY 214
++ ++ WN LING C+++
Sbjct: 215 GCVRD----LVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLES 270
Query: 215 LRKAVELFGMMPKKNVASWVSLI----DGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
L+ E+ + + + +SL+ D +++ GDL+ LF+ M +K VVSWT MI G
Sbjct: 271 LKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVG 330
Query: 271 FSQNGEAE-------------------------------KALAMFFQMLDAGVRANDFTV 299
+++NG + +AL +F +M + ++ + T+
Sbjct: 331 YAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTM 390
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
+ LSAC+++GAL+ G+ HNYI ++ L A+GTAL+DMYAKCGN+ A VF E
Sbjct: 391 LHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPR 450
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
++ LTWTA+I GLA++G AI YF KM+ SG PD FL +LTAC + G V+ +
Sbjct: 451 RNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKY 510
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
FD M+ + + P KH++ +VNLL R G +++A I MP D ++WGALF AC H+
Sbjct: 511 FDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHR 570
Query: 480 DTKIAKIA 487
+ I + A
Sbjct: 571 NLLIGERA 578
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 244/466 (52%), Gaps = 46/466 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIIL-----HNLFASSRITTQLISSASLHKSIDY 81
N T +I+L+ + S + +QI A I H+ FAS ++ ISS ID+
Sbjct: 8 NGSTNQTLIALLENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWG---DIDH 64
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
+ IF + +N +IRG ++ + +S FV MLR V P+ LTYPF++K+VA
Sbjct: 65 SYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVAR 124
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
LS L L +HC I K G+ +D F+ L MY G A KVFDE
Sbjct: 125 LSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDE------------ 172
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
M +N SW +++DG+ + GDL A ++FE MP++ V
Sbjct: 173 -----------------------MLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDV 209
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW++MI+G + GE ALA+F +M G +AN+ T+VS L ACA +GALE G +H Y
Sbjct: 210 VSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQY 269
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIWGLAIHGRYE 379
+ N + T+L+DMYAKCG IE A VF + D+L W +I GLA HG
Sbjct: 270 MVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVH 329
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
++++ FK+M G PD +L + +AC + G V A +FF S+ + P +H+ +
Sbjct: 330 ESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMV-PKSEHYACM 388
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
V++LSR GQ+ +A +FI +MP P + GAL C H+ +A+
Sbjct: 389 VDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAE 434
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 169/539 (31%), Positives = 272/539 (50%), Gaps = 87/539 (16%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI------SSASLHKSI 79
S++ T+ I L+ + S + L+QI QI+ S + + S +LH
Sbjct: 27 SSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLH--- 83
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
YA IF++ L I+N++I+ +N F+ + F + + P+ TYPFV K++
Sbjct: 84 -YAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAI 142
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
L + G ++ +VKSG+E+D +V L DMY ++G+ + +VF+E P+++ V
Sbjct: 143 GCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD----V 198
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVASWVS------------------- 235
+ WNVLI+G K AV++F M ++ N A+ VS
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHR 258
Query: 236 ---------------LIDGFMRKGDLKKAGE----------------------------- 251
L+D + + G L A E
Sbjct: 259 YVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEA 318
Query: 252 --LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
LFE+ P + VV WTAMING+ Q + A+A+F +M V + FT+V+ L+ CA++
Sbjct: 319 RELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQL 378
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G LE G +H YI N + +GTAL++MYAKCG IE + +F KEKD +WT++I
Sbjct: 379 GTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSII 438
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GLA++G+ +A++ F +M+ +G +PD F+ +L+AC + G V+ F SM Y I
Sbjct: 439 CGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQI 498
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI---WGALFCACRTHKDTKIAK 485
EP ++H+ +++LL R GQ+D+A I K P + VI +GAL ACRTH + ++ +
Sbjct: 499 EPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGE 557
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 2/215 (0%)
Query: 1 MKGHV-FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G+V FNR A+A ++ + T +++ + +Q + IH I + +
Sbjct: 337 INGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKI 396
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T LI + I+ +L IF+ K+ + +I GLA N + F
Sbjct: 397 MIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAE 456
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLG 178
M++ V+P+ +T+ V + + L+ GR + +E L D+ + G
Sbjct: 457 MVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAG 516
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ A ++ +++P N V L+ L++ C G
Sbjct: 517 QLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHG 551
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/458 (33%), Positives = 252/458 (55%), Gaps = 38/458 (8%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
+ L+ ++ +++RQIHAQ I+ L A +L+ S I YAL +F+ ++
Sbjct: 29 VILLQMCHNFQEVRQIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPSPDV 88
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+N +IRGL + + + +L + P+ TY FV K + L + G+ +HC
Sbjct: 89 FAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQ 148
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
++K+GV D + L MY KS+ + ++ CS+
Sbjct: 149 VIKAGVAPDTHIHTSLIHMYA-------------------KSDCLACAEGVLAECSQ--- 186
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+NV + S+I G+M +G ++KA +F++M K +W+ MI G+++N
Sbjct: 187 -------------ENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKN 233
Query: 275 GEAEKALAMFFQML---DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
G E+AL MF +M+ ++GV+ N+ +VS+LSA A +GAL+ G +H YI +
Sbjct: 234 GMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAKISI 293
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+GT LVDMYAKCG+I + +F E +++D++TW M+ G A+HG+ + Q F +M+
Sbjct: 294 TLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAG 353
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
GT P+ +F+AIL+AC ++G ++L ++F+ M D+ I PSV+H+ +V+LL R GQ+ +
Sbjct: 354 GTRPNEVIFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAE 413
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
A I MPE P VIWGAL ACR HKD + + A +
Sbjct: 414 AEELIISMPEEPTAVIWGALLSACRIHKDLRRGRRAFR 451
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/500 (31%), Positives = 265/500 (53%), Gaps = 53/500 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTP 91
I+SL+ + +L+++H +I ++ ++L+ + S ++YA S+F+
Sbjct: 8 ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+L+I+N +I+G + + ++ + M + P+ T+PFV K+ + ++ +LG+ +
Sbjct: 68 PSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCV 127
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-- 209
H IVK+G E D + L MY G A KVFD+ P+ N V+ W LI GC
Sbjct: 128 HNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWN----VVAWTSLIAGCIS 183
Query: 210 ----SKIGYLRKAVELFGMMPKK----------------NVASWV--------------- 234
S+ + K +EL+ + P + N WV
Sbjct: 184 NDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+++D + + G LK A +LF +MP + +V+W +MI ++Q G+A +AL +F
Sbjct: 244 SNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFS 303
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M AG + T + + ACA +GAL +G +H Y+S + AIGTALVDMYAK G
Sbjct: 304 DMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSG 363
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAIL 404
+ E A VF E ++KD+ WT++I GLA+HG E+A+ +FKKM + PD ++ +L
Sbjct: 364 DAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVL 423
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC + G+V+ N F SM+ + IEP+ +H+ +V+LLSR G++ +A + KMP P+
Sbjct: 424 SACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPN 483
Query: 465 FVIWGALFCACRTHKDTKIA 484
IW AL C+ +++ +A
Sbjct: 484 TAIWSALLNGCKIYQNIDVA 503
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 247/481 (51%), Gaps = 45/481 (9%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I+ + LI S + L QIHA + H L + +L S + +DY++++F
Sbjct: 28 ISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGR 87
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
++ + +I G A + ++ + ML V PN T+ S+ L + G
Sbjct: 88 TQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF----SSILKLCPIEPG 143
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ LH VK G + D +VR L D+Y + G A ++FD
Sbjct: 144 KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-------------------- 183
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
MP+K++ S +++ + + G+L A LF+ M E+ V W MI
Sbjct: 184 ---------------TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMI 228
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++QNG +AL +F +ML A + N+ TV+S LSAC ++GALE+G VH+YI N
Sbjct: 229 DGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ 288
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+GTALVDMY+KCG++E A LVF + +KD++ W +MI G A+HG ++A+Q FK M
Sbjct: 289 FNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM 348
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P F+ IL+AC +SG V + F+ M+ +Y IEP ++H+ +VNLL R G
Sbjct: 349 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGH 408
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508
V++A + M PD V+WG L ACR H KIAL + L + Q ++ T+
Sbjct: 409 VEQAYELVKNMNIEPDPVLWGTLLGACRLH-----GKIALGEKI-VELLVDQNLANSGTY 462
Query: 509 M 509
+
Sbjct: 463 I 463
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 8/247 (3%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K+ KP N +T ++S + + R +H+ I + + + + T L+ S S
Sbjct: 248 LKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +FD K++ +N +I G A + Q + F M R+ + P +T+ + +
Sbjct: 307 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 366
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ G + K EY ++ H M LG+ + ++ N
Sbjct: 367 CGHSGWVTEGWDI---FNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 423
Query: 198 SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+LW L+ C KI K VEL N +++ L + + G+ L
Sbjct: 424 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 483
Query: 255 QMPEKGV 261
M + GV
Sbjct: 484 MMKDSGV 490
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 240/450 (53%), Gaps = 39/450 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
SLI S S L QIHA ++ L+ + + +L S + +D ++ +F+ F N+
Sbjct: 52 SLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVF 111
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
F+ +I ++ F ++ ML V PN T+ V KS + L G+ LHC
Sbjct: 112 SFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQA 167
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+K G+ D +VR L D+Y + G A ++FD+
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDK-------------------------- 201
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
MP++++ S +++ + + G+L KA LFE M E+ VV W MI G++Q+G
Sbjct: 202 ---------MPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSG 252
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
++L +F +ML A N+ TV++ LSAC ++GALE+G +H+YI + +GT
Sbjct: 253 VPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGT 312
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
AL+DMY+KCG++E A LVF ++KD++ W +MI G A+HG + A+Q F++M +G +P
Sbjct: 313 ALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
F+ IL+AC + G V+ +FF MR Y IEP ++H+ +VNLL R G +++A
Sbjct: 373 TDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL 432
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ M D V+WG L CR H + K+ +
Sbjct: 433 VKNMTIAADPVLWGTLLGCCRLHVNIKLGE 462
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 256/464 (55%), Gaps = 47/464 (10%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQI-----ILHNLFASSRITTQLISSASLHKS-IDY 81
N+ +T +SL+ ++ +L+QIH Q+ I H L S +TT AS+ S + Y
Sbjct: 10 NVEQT--MSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTY----ASMEFSNLTY 63
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD + N ++N +IR + ++ + + + ML S+ N T+PF+ K+ ++
Sbjct: 64 ARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSA 123
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
LS L+ +H I+K G + + L +Y G + A +FD
Sbjct: 124 LSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFD------------- 170
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++P +++ SW ++IDG+++ G+++ A ++F+ MPEK V
Sbjct: 171 ----------------------LLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNV 208
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SWT+MI GF + G ++AL + QML AG++ + T+ +LSACA +GALE G +H Y
Sbjct: 209 ISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTY 268
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N + +G AL+DMY KCG ++ A LVF + ++K + TWTA+I G A+HG+ +A
Sbjct: 269 IGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEA 328
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ +F +M +G +P F A+LTAC ++G V+ + F+SM Y ++P ++H+ +V+
Sbjct: 329 LDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVD 388
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
LL R G + +A F+ MP P+ IWG+L AC HK ++ K
Sbjct: 389 LLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGK 432
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 23/376 (6%)
Query: 3 GHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQI----ILHN 58
+ F L A + + + +H+ I + S ++++NS ++ I I +L +
Sbjct: 111 AYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFD 170
Query: 59 LFASSRITT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
L S I + +I +++ A IF KN+ + +I G + +
Sbjct: 171 LLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCL 230
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
ML ++P+++T + A L L G+ +H I K+ ++ D + L DMYV+
Sbjct: 231 LQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVK 290
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----S 232
G+ + A VF + +K V W +I G + G +A++ F M K + +
Sbjct: 291 CGEMKKALLVFSKLEKK----CVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFT 346
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPE----KGVVS-WTAMINGFSQNGEAEKALAMFFQM 287
+ +++ G +++ LFE M K V+ + M++ + G ++A M
Sbjct: 347 FTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESM 406
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
++ N S L+AC LE G + ++ D G L ++A G
Sbjct: 407 ---PIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRY-IHLASIHAAAGEW 462
Query: 348 EAASLVFGETKEKDLL 363
+ AS V K K LL
Sbjct: 463 DEASQVRSHIKNKGLL 478
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 243/454 (53%), Gaps = 41/454 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNL 94
L H S +L +IH +I L +Q +S ++L S +DYA +
Sbjct: 14 LRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPN 73
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+ +N +IRG + + + + IS ++ MLR + P+ +TYPF+ KS + LS LG LHC
Sbjct: 74 YGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCS 133
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+VKSG+E+D F+ L MY A K+FDE
Sbjct: 134 VVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDE------------------------- 168
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
MP KN+ +W S++D + + GD+ A +F++M E+ VV+W++MI+G+ +
Sbjct: 169 ----------MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKR 218
Query: 275 GEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
GE KAL +F QM+ G +AN+ T+VS + ACA +GAL G VH YI L +
Sbjct: 219 GEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVIL 278
Query: 334 GTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
T+L+DMYAKCG+I A VF KE D L W A+I GLA HG +++Q F KM S
Sbjct: 279 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 338
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
+PD FL +L AC + G VK A +FF S++ + EP +H+ +V++LSR G V
Sbjct: 339 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKD 397
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A +FI++MP P + GAL C H + ++A+
Sbjct: 398 AHDFISEMPIKPTGSMLGALLNGCINHGNLELAE 431
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 230/431 (53%), Gaps = 41/431 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV +R LA S F IS + MLR P+ ++PF+ KS ASLSL G+ LHC +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
K G E + FV L MY + G A KVF+E P+ S+ + +N LI+G +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS--SQLSVCYNALISGYTANSKVT 138
Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
+ G +V + G++P V ++ S I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+M+ G ++ LF++MP KG+++W A+I+G+SQNG A L ++ QM +GV + F
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+VS LS+CA +GA + G V + N F + A + MYA+CGN+ A VF
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K L++WTAMI +HG E + F M+ G PDG VF+ +L+AC +SG L
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F +M+ +Y +EP +H++ +V+LL R G++D+A+ FI MP PD +WGAL AC+
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438
Query: 478 HKDTKIAKIAL 488
HK+ +A++A
Sbjct: 439 HKNVDMAELAF 449
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 165/403 (40%), Gaps = 53/403 (13%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
+Q+H + + T LIS + A +F+ P++ + +N LI G
Sbjct: 73 QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEE-NPQSSQLSVCYNALISGY 131
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
NS F M V + +T + L LGR LH VK G++ +
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
V MY++ G ++FDE P K ++ WN +I+G S+ G +EL+
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKG----LITWNAVISGYSQNGLAYDVLELYEQ 247
Query: 225 MPKKNVA----SWVSLI---------------------DGFM--------------RKGD 245
M V + VS++ +GF+ R G+
Sbjct: 248 MKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGN 307
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
L KA +F+ MP K +VSWTAMI + +G E L +F M+ G+R + V LSA
Sbjct: 308 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSA 367
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
C+ G + G+ + + ++ L+ + LVD+ + G + EA + E D
Sbjct: 368 CSHSGLTDKGLELFRAMK-REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDG 426
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
W A++ IH + A F K++ EP+ + +++
Sbjct: 427 AVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMS 467
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/471 (32%), Positives = 249/471 (52%), Gaps = 36/471 (7%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
P N S+ K ++ + IISL+ S Q+ IHAQ+I + + +L+ S S
Sbjct: 33 PHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 92
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
+IDYA IF + N++++ LI G + ++ I + ML S+ P+
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 152
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
+ K+ S L GR +H +K G + VR+ + ++Y + G+ A +VF+E
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE----- 207
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
MP+ VAS V +I + +G +++AG +F
Sbjct: 208 ------------------------------MPEDVVASTV-MISSYSDQGLVEEAGAVFS 236
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
++ K V WTAMI+GF +N E +AL F M VR N+FT+V LSAC+++GALE
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G VH+Y+ + L +G AL++MY++CG+I+ A VF E K++D++T+ MI GL++
Sbjct: 297 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 356
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
+G+ QAI+ F+ M+ P F+ +L AC + G V F SM DY +EP ++
Sbjct: 357 NGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIE 416
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
H+ +V+LL RVG++++A + I M TPD ++ G L AC+ HK+ ++ +
Sbjct: 417 HYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGE 467
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 25/215 (11%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
NLF + LI+ S SID A ++FD +++ +N +I GL+ N + I F
Sbjct: 312 NLF----VGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQ 176
M+ +RP +T+ V + + L+ G + H + VE + D+ +
Sbjct: 368 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 427
Query: 177 LGKTRGAF---KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----- 228
+G+ A+ + TP+ ++ L++ C + K +EL + K+
Sbjct: 428 VGRLEEAYDLIRTMKMTPDH------IMLGTLLSACK----MHKNLELGEQVAKELEDRG 477
Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ ++V L + G K+A ++ +M E G+
Sbjct: 478 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/497 (35%), Positives = 253/497 (50%), Gaps = 48/497 (9%)
Query: 45 KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSI-DYALSIF--DHFTPKNLHIFNVL 100
+ L Q+HA +I L S + L+ +A+ ++ YA+S+F P + +NVL
Sbjct: 30 RYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89
Query: 101 IRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+R L H + + FV ML + SV P++ T KS + + L +GRG+ VK G
Sbjct: 90 MRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRG 149
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ D FV L MY A +FD E V++WN +I K G + V
Sbjct: 150 LMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENG----VVMWNAIITAYMKNGNWMEVV 205
Query: 220 ELFGMMPKKNVA----------------------SWVS-----------------LIDGF 240
E+F M + VA WV+ LID +
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G+L KA LF+ M + VV+W+AMI+G++Q + +ALA+F +M A V ND T+V
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S LSACA +GALE G VH+YI L +GTALVD YAKCG I+ A F K
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
+ TWTA+I G+A +GR +A++ F M + EP F+ +L AC +S V+ F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
DSM DY I+P +H+ VV+LL R G +D+A FI MP P+ VIW AL +C HK+
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505
Query: 481 TKIAKIALQSSCSLNLS 497
+I + AL+ SLN S
Sbjct: 506 VEIGEEALKQIVSLNPS 522
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 256/473 (54%), Gaps = 43/473 (9%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--S 72
PT+ + S +N +T + L+ ++ ++LRQIH Q++ L ++L++ +
Sbjct: 8 PTSQLSSE----SNAAQT--LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ S+ YA ++FD N ++N +IRG + + + + + ML SV N T+
Sbjct: 62 SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
PF+ K+ +S+S + +H I+K G + +
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT------------------------- 156
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
N L+N SK G ++ A LF + +++ SW S+IDG+ + G+++ A E+
Sbjct: 157 ----------NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F MPE+ ++SWT+MI+G G+ ++AL +F +M AG++ ++ +VS L ACA +G L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+ G +H YI ++ + +G L+DMYAKCG++E A VF + +EK + WTAMI G
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
AIHGR +A+++F KM +G EP+ F ILTAC ++G V A F+SM + +PS
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++H+ +V+LL R G + +A I MP P+ IWGAL AC H + ++ K
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 256/485 (52%), Gaps = 38/485 (7%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLH 95
+ + + ++ Q+HA I ++++L++ + + ++ YA S+FD L
Sbjct: 22 LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N+LI+ EN I+ F +L P+ T P V K A L L G+ +H L+
Sbjct: 82 SWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLV 140
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--------------------------- 188
+K G D FV L MY + G+ KVFD
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELAL 200
Query: 189 ----ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
E PEK+ W +LI+G SK G L A ++F MP +N SW ++I+G+M+ G
Sbjct: 201 EMFEEMPEKDS----FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAG 256
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D A ELF+QMPE+ +V+W +MI G+ +N + KAL +F ML + N T++ A+S
Sbjct: 257 DSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVS 316
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A + + +L G VH+YI + F G +GT L++MY+KCG++++A VF +K L
Sbjct: 317 AASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH 376
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
WT++I GL +HG EQ ++ F +M +G +P F+ +L AC ++G + A +F M
Sbjct: 377 WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMT 436
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+DY I+PS++H+ ++++L R G +++A + I +MP + VIW +L R H + ++
Sbjct: 437 YDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMG 496
Query: 485 KIALQ 489
+ A Q
Sbjct: 497 EYAAQ 501
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/471 (32%), Positives = 250/471 (53%), Gaps = 36/471 (7%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
P N S+ K ++ + IISL+ S Q+ IHAQ+I + + +L+ S S
Sbjct: 33 PHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 92
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
+IDYA IF + N++++ LI G + ++ I + ML S+ P+
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 152
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
+ K+ S L GR +H +K G+ + VR+ + ++Y + G+ A +VF+E
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEE----- 207
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
MP+ VAS V +I + +G +++AG +F
Sbjct: 208 ------------------------------MPEDVVASTV-MISSYSDQGLVEEAGAVFS 236
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
++ K V WTAMI+GF +N E +AL F M VR N+FT+V LSAC+++GALE
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G VH+Y+ + L +G AL++MY++CG+I+ A VF E K++D++T+ MI GL++
Sbjct: 297 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 356
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
+G+ QAI+ F+ M+ P F+ +L AC + G V F SM DY +EP ++
Sbjct: 357 NGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIE 416
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
H+ +V+LL RVG++++A + I M TPD ++ G L AC+ HK+ ++ +
Sbjct: 417 HYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGE 467
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 17/211 (8%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
NLF + LI+ S SID A ++FD +++ +N +I GL+ N + I F
Sbjct: 312 NLF----VGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
M+ +RP +T+ V + + L+ G + H + GVE + D+ +
Sbjct: 368 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427
Query: 177 LGKTRGAF---KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-- 231
+G+ A+ + TP+ ++ L++ C L ++ ++ + A
Sbjct: 428 VGRLEEAYDLIRTMKMTPDH------IMLGTLLSACKMHKNLELGEQVAKVLEDRGQADS 481
Query: 232 -SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++V L + G K+A ++ +M E G+
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 253/450 (56%), Gaps = 13/450 (2%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLH--------KSIDYALSIFDHFTPKNLHIFN 98
L+QIHA +I++ L ++ +L+ + ++ I YAL +F + ++N
Sbjct: 17 LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWN 76
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
IRG +++ ++ + M + SV+P+ T+PFV K+ L ++ G +H +++
Sbjct: 77 TYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRL 136
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G + VR L + + G + A +FD++ + + V+ W+ LI G ++ G L A
Sbjct: 137 GFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGD----VVAWSALIAGYAQRGDLSVA 192
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
+LF MPK+++ SW +I + + G+++ A LF++ P K +VSW A+I G+
Sbjct: 193 RKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNR 252
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTAL 337
+AL +F +M G ++ T++S LSACA +G LE+G +VH I N L +G AL
Sbjct: 253 EALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNAL 312
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
VDMYAKCGNI A VF ++KD+++W ++I GLA HG E+++ F++M + PD
Sbjct: 313 VDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDE 372
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+ +L AC ++G V +F M+ Y IEP+++H VV++L R G + +A NFI
Sbjct: 373 VTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIA 432
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA 487
M P+ ++W +L AC+ H D ++AK A
Sbjct: 433 SMKIEPNAIVWRSLLGACKVHGDVELAKRA 462
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 263/465 (56%), Gaps = 12/465 (2%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH--KSIDYALSIFDHFTPKNL 94
L + + + L+QIHA ++++ L ++ + +LI SASL ++ YA +FD ++
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDV 77
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
I N ++RG A++ + +S + M + V P+R T+ FV K+ + L S G H
Sbjct: 78 SICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGK 137
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+V+ G + +V+ L + G A ++FD++ + +K + W+ + +G +K G
Sbjct: 138 VVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK----VAWSSMTSGYAKRGK 193
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ +A+ LF MP K+ +W +I G ++ ++ A ELF++ EK VV+W AMI+G+
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-----SCNDFGL 329
G ++AL +F +M DAG + T++S LSACA +G LE G R+H YI + +
Sbjct: 254 GYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYV 313
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
I AL+DMYAKCG+I+ A VF K++DL TW +I GLA+H E +I+ F++M
Sbjct: 314 GTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQ 372
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
P+ F+ ++ AC +SG+V +F MR Y IEP++KH+ +V++L R GQ+
Sbjct: 373 RLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQL 432
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
++A F+ M P+ ++W L AC+ + + ++ K A + S+
Sbjct: 433 EEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 477
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 254/451 (56%), Gaps = 11/451 (2%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIR 102
+ L+ +HAQIILH L + +LIS ++ + D YA +FD N ++N LIR
Sbjct: 2 RGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIR 61
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G + + + F M+ + PN T PFV K+ S +H L +K G+
Sbjct: 62 GYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
FV+ L +YV G A K+FD+ +K + +++ N L++ +K G L A +F
Sbjct: 122 LVFVQNALIAVYVVCGLIHCARKLFDDITDKTLID-IIVRNALVDMYAKCGNLHSAQAIF 180
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+KNV SW S+I + + G ++ A ++F+QMP K VVSW +MI+ + + G+ +AL
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 240
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT----ALV 338
+F +M ++ V ++ T+VS L+AC+++G L G ++HNYI N KGA G +L+
Sbjct: 241 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN----KGAYGVTLYNSLI 296
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG + A +F E K+L++W +I LA+HG +AI+ F++M GT PD
Sbjct: 297 DMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEI 356
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
+L+AC +SG V + L +FD M Y + ++H+ +V+LL R G + +A+ I +
Sbjct: 357 TLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGR 416
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP PD V+WGAL ACR H + +I K L+
Sbjct: 417 MPMKPDVVVWGALLGACRIHGNVEIGKQILK 447
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 163/477 (34%), Positives = 254/477 (53%), Gaps = 45/477 (9%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSI 79
S P +I E H ++ K L++IHA ++ L + +++ + S I
Sbjct: 22 SDHPHLSILEKHCTTM-------KDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDI 74
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
+YA +F NL +N +IRG +++S IS F+ ML +S V+P+RLTYP V K+
Sbjct: 75 NYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKA 134
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L L G LH ++K G+++D F+R + MY G +K F E + +
Sbjct: 135 YAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFD---- 190
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
++ WN +I G +K G + ++ +LF MP +N SW S+I G++R G L++A +LF QM E
Sbjct: 191 IVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQE 250
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++ ++FT+VS L+A A++GAL+ G +
Sbjct: 251 E-------------------------------RIKPSEFTMVSLLNASARLGALKQGEWI 279
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H+YI N+F L + +++DMY KCG+I A VF K L +W MI GLA++G
Sbjct: 280 HDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCE 339
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+AIQ F ++ S PD F+ +LTAC YSG V A +F M Y IEPS+KH++
Sbjct: 340 NEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSC 399
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+ L R G +++A I MP PD +IW +L ACR H + ++AK A + L+
Sbjct: 400 MVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLD 456
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 24/293 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D + +FD +N +N +I G N + + F M ++P+ T + +
Sbjct: 207 VDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNA 266
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L L G +H I K+ E + V + DMY + G AF+VF+ P K S
Sbjct: 267 SARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSS- 325
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
WN +I G + G +A++LF + N+ ++V ++ G + KA E F
Sbjct: 326 ---WNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFS 382
Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M E + ++ M++ + G E+A + M V + S LSAC K
Sbjct: 383 LMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNM---PVNPDAIIWSSLLSACRKH 439
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
G +E R +I D + G L+ NI AAS F E E+ L
Sbjct: 440 GNVELAKRAAKHIV--DLDGNDSCGYVLL------SNIYAASDQFEEAMEQRL 484
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 166/520 (31%), Positives = 258/520 (49%), Gaps = 64/520 (12%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRIT--TQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
++ S + +HA +I F I+ +L+S S+ A +FD KN+ +
Sbjct: 76 NAKSLPDAKLLHAHMI-QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSW 134
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
+I A + H Q + F M + ++PN T+ + + L +L H IVK
Sbjct: 135 TAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG---EFHDEIVK 191
Query: 158 SGVEYDAFVRVHLADMY-------------------------------VQLGKTRGAFKV 186
G E + FV L DMY VQ G A K+
Sbjct: 192 GGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKL 251
Query: 187 FDETP---------------------------EKNKSESVLLWNVLINGCSKIGYLRKAV 219
F E P EK ++++ WN +I G + G +++A
Sbjct: 252 FQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAF 311
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+LF +MP++NV SW ++I GF + G +++A +LF+ MPE VVSW AMI G+SQNG+AE
Sbjct: 312 KLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAEN 371
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F QM ++ N T L ACA + LE G H + + F +G LV
Sbjct: 372 ALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVG 431
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MYAKCG+IE A VF +++D + +AMI G AI+G +++++ F++M ++G +PD
Sbjct: 432 MYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVT 491
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
F+ +L+AC ++G V +FD M Y I P+++H+ +++LL R G D+A + INKM
Sbjct: 492 FVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKM 551
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
P PD +WG+L ACRTH + + + Q +LN P
Sbjct: 552 PIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNP 591
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 288/566 (50%), Gaps = 69/566 (12%)
Query: 13 IAPTTNIKSSH---KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
I+ N++ H P+ SL+ S KQL+QIHAQ++ +++ + ++
Sbjct: 11 ISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI 70
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPN 128
A L K YA F + + FNV+IRGL+ + S F ++ L ++PN
Sbjct: 71 ---ADL-KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPN 126
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
LTYPF+ + ++L + GR HC +++ G++ D V L MY + GK A KVFD
Sbjct: 127 NLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFD 186
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
E +K+ ++ WN +I+G SK+ + +AV LF G P +
Sbjct: 187 EISQKD----LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
Query: 229 --NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ +WV +LI + + GDL A +F+ M +K V+W AMI
Sbjct: 243 DLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMIT 302
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G++QNG +E+A+ +F M + + T++ LSACA +GAL+ G +V Y S F
Sbjct: 303 GYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+GTALVDMYAKCG+++ A VF +K+ ++W AMI LA HG+ ++A+ FK MM
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMM 422
Query: 390 YSG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
G P+ F+ +L+AC ++G V F M + + P ++H++ +V+L SR G
Sbjct: 423 NEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAG 482
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK------IALQSSCSLNLSIPQA 501
+++A +F+ MPE PD VI GAL AC+ K+ I++ + L+ S S N I
Sbjct: 483 HLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSK 542
Query: 502 M----------SYCQTFMQQKGDGRT 517
+ + + M+QKG +T
Sbjct: 543 LYANLRRWDDSARMRMLMKQKGVSKT 568
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 176/388 (45%), Gaps = 48/388 (12%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
+N+ + A+ + +K NN+T + + + + R H +I L +
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
+ LI+ + + A +FD + K+L +N +I G ++ H + F M+
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGF 224
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+PN ++ V + L L LG + +V++ + + F+ L MY + G A +
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARR 284
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------------------- 226
+FD +K+K + WN +I G ++ G +A++LF M
Sbjct: 285 IFDSMKKKDK----VTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340
Query: 227 --------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ +V +L+D + + G L A +F MP+K VSW A
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNA 400
Query: 267 MINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
MI+ + +G+A++ALA+F M++ G V ND T V LSAC G ++ G R+ + +S
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMS- 459
Query: 325 NDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ FGL I + +VD++++ G++E A
Sbjct: 460 SSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 241/457 (52%), Gaps = 40/457 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTP 91
+ISL+ S +L++IHA + + I ++L+ S+ S + +DY+ + +
Sbjct: 16 LISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPN 75
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N LIR + + I+ F+ ML+ V P+ LTYPF+ K+ + L LG +
Sbjct: 76 PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 135
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H IVKSG E D F++ L MY A KVFDE
Sbjct: 136 HVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDE---------------------- 173
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
MP+KN+ +W +++DG+ + GDL A E+F MPEK VVSW+++I+G+
Sbjct: 174 -------------MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGY 220
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ +A+A+F +M G AN+ T+VSAL ACA +GALE G +H YI N+ L
Sbjct: 221 VKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTI 280
Query: 332 AIGTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ T+LVDMYAKCG I A VF +E D+L W A+I GLA HG ++A+ F +M
Sbjct: 281 VLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMK 340
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G PD +L +L+ C + G V+ A FFD +R I P V+H+ +V+ LSR GQV
Sbjct: 341 MVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMI-PKVEHYACMVDALSRAGQV 399
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+A F+ +MP P + GAL C H IAK+
Sbjct: 400 SEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKV 436
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 169/515 (32%), Positives = 261/515 (50%), Gaps = 71/515 (13%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLIRG 103
LR IHAQ+I L ++ ++LI L D YA+S+F+ NL I+N + RG
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A +S S + +V M+ L + PN T+PF+ KS A G+ +H ++K G + D
Sbjct: 63 HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KS 196
+V L MYVQ G+ A KVFD++ ++
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------- 231
+ V+ WN +I+G ++ G ++A+ELF M K NV
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242
Query: 232 -SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
SW+ +LID +++ G+++ A LFE + K V+SW +I G++
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
++AL +F +ML +G ND T++S L ACA +GA+E G +H YI+ G+ A T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
+L+DMYAKCG+IEAA VF + L +W AMI+G A+HGR A F +M + EP
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
D F+ +L+AC +SG + L + F SM+ DY I P ++H+ +++LL G +A
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
IN M PD VIW +L AC+ H + ++ + Q+
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 517
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + I A +FD K++ +N +I G AE + + + F M++ +VR
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + + LGR +H I G + + L D+Y++ G+ A +
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 277
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F+ K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 278 FEGLSYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAH 333
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+ W+ SLID + + GD++ A ++F+ + + + SW
Sbjct: 334 LGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWN 393
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A A +F +M + +D T V LSAC+ G L+ G + +
Sbjct: 394 AMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK-E 452
Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ G EA ++ E D + W +++ +HG E
Sbjct: 453 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 512
Query: 383 QYFKKMMYSGTEPDGTVFL 401
Y + ++ + G+ L
Sbjct: 513 SYAQNLIKIEPKNPGSYVL 531
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H+ I H ++ +I LI
Sbjct: 212 MKTNVRPDES-TMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 270
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ + K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + R L DMY + G A +VFD ++ S
Sbjct: 331 CAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLS 390
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G A ++F M K + ++V L+ G L +
Sbjct: 391 S----WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 446
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M E ++ + MI+ +G ++A M M + + S L AC
Sbjct: 447 FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACK 503
Query: 308 KVGALEAG 315
G +E G
Sbjct: 504 MHGNVELG 511
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/500 (32%), Positives = 263/500 (52%), Gaps = 44/500 (8%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDY 81
S++ I+S + S +L Q HA I+ +H+ FA+SR+ +S+ S ++I Y
Sbjct: 2 SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIAS-VSTNSHAQAIPY 60
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A SIF N +++N +IR A + ++ ++ F ML SV P++ T+ F KS S
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
S + GR +H ++K+G+ D F++
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQ---------------------------------- 146
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE-LFEQMPEKG 260
N LI+ + G + A L M +++V SW +L+ + +G ++ A +F + P K
Sbjct: 147 -NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKN 205
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW AMI G+S G + L +F M AGV+ ++ T+VS LSACA VGAL G VH
Sbjct: 206 VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHA 265
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI N + G + TALVDMY+KCG+IE A VF KD+ TW ++I GL+ HG +
Sbjct: 266 YIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQH 325
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+Q F +M+ G +P+ F+ +L+AC +G + F+ M + I+P+++H+ +V
Sbjct: 326 ALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMV 385
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500
+LL RVG +++A + KMP+ V+W +L ACR H + ++A+ Q L LS +
Sbjct: 386 DLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQK--LLELSPQE 443
Query: 501 AMSYCQTFMQQKGDGRTWRE 520
+ S+ Q GR W++
Sbjct: 444 SSSFVQLSNMYASMGR-WKD 462
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 239/444 (53%), Gaps = 40/444 (9%)
Query: 44 TKQLRQIHAQIILHNLFA--SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
TKQL QI AQ+I + + + I +LI + + + ++ +A IF N+ +N +I
Sbjct: 24 TKQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAII 83
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS--KSVASLSLLSLGRGLHCLIVKSG 159
+ ++ ++ F L L PN Y + S K+ A L ++ G +H +++KSG
Sbjct: 84 KAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSG 143
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
++ + + L DMY + + A +VFDE
Sbjct: 144 LDNNIHLGTSLVDMYFKFREPASAGQVFDE------------------------------ 173
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
MP ++V SW +++ G+ GDL+ A +F+QM E+ V+SW AMI G+ QNG+
Sbjct: 174 -----MPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSD 228
Query: 280 ALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
A+ +F +M GV +D T+VS LSACA VGAL+ G + ++ GL +G AL+
Sbjct: 229 AIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALI 288
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG +E A +F +E+D+++W+ MI G HG ++A Y+ KM+ G +P+
Sbjct: 289 DMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEV 348
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+ +L+AC ++G V + F M +Y I P V H+ V++LLSR G++D+A + IN
Sbjct: 349 TFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINS 408
Query: 459 MPETPDFVIWGALFCACRTHKDTK 482
MP P+ ++WGAL CR HKD +
Sbjct: 409 MPIEPNVIVWGALLGGCRIHKDFR 432
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/447 (32%), Positives = 234/447 (52%), Gaps = 41/447 (9%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
QL+QIHA + + L + + +L+ L YA ++FD +++++N I+ +
Sbjct: 3 QLKQIHAYSLRNGLDHTKFLIEKLLQLPDL----PYACTLFDQIPKPSVYLYNKFIQTFS 58
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
H C + M PN+ ++ F+ + ASL + G+ LH KSG D F
Sbjct: 59 SIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMF 118
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
L DMY +K+G LR A +LF M
Sbjct: 119 AMTALLDMY-----------------------------------AKLGMLRSARQLFDEM 143
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
P +++ +W SLI G+ R G ++ A ELF +MP + V+SWTA+I+G++QNG+ KAL MF
Sbjct: 144 PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFI 203
Query: 286 QML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ + G + N+ ++ S L AC+++GAL+ G R+ Y N F + A+++++A+C
Sbjct: 204 GLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARC 263
Query: 345 GNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
GNIE A VF E K +L +W MI GLA+HGR A+Q + +M+ PD F+ +
Sbjct: 264 GNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGL 323
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V F+SM + + P ++H+ +V+LL R G++ +A N I MP P
Sbjct: 324 LLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAP 383
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQS 490
D VIWG L AC H + ++ ++A +S
Sbjct: 384 DSVIWGTLLGACSFHGNVELGEVAAES 410
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 263/499 (52%), Gaps = 44/499 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
SL+ S + L QIHAQ+++ L S + T+ ++++ I YA +FD F ++
Sbjct: 76 SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
++N +IRG + ++ F I + M V P+ T P V K+ + + +L +G+ +H I
Sbjct: 136 LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQI 195
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ G E D FV+ L +Y + G+ A VF+ ++N ++ W +I+G + G
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN----IVSWTSMISGYGQNGLP 251
Query: 216 RKAVELFGMMPKKNV-ASWVSLID------------------------------------ 238
+A+ +FG M ++NV W++L+
Sbjct: 252 MEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISL 311
Query: 239 --GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + G + A F+QM V+ W AMI+G+++NG +A+ +F +M+ +R +
Sbjct: 312 TAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDS 371
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
TV SA+ ACA+VG+L+ + +YI+ ++ + TAL+DM+AKCG+++ A VF
Sbjct: 372 ITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
T +KD++ W+AMI G +HGR + AI F M +G P+ F+ +LTAC +SG V+
Sbjct: 432 TLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
F SM++ Y IE +H+ VV+LL R G +++A +FI MP P +WGAL AC+
Sbjct: 492 WELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACK 550
Query: 477 THKDTKIAKIALQSSCSLN 495
++ + + A + SL+
Sbjct: 551 IYRHVTLGEYAAEQLFSLD 569
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 168/524 (32%), Positives = 262/524 (50%), Gaps = 71/524 (13%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLIRG 103
LR IHAQ+I L ++ ++LI L D YA+S+F+ NL I+N + RG
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A +S S + +V M+ L + PN T+PF+ KS A G+ +H ++K G + D
Sbjct: 63 HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KS 196
+V L MYVQ G+ A KVFD++ ++
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPV 182
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------------ 232
+ V+ WN +I+G ++ G ++A+ELF M K NV
Sbjct: 183 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 242
Query: 233 --WV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
W+ +LID + + G+++ A LFE + K V+SW +I G++
Sbjct: 243 HLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGT 335
++AL +F +ML +G ND T++S L ACA +GA++ G +H YI+ G+ A + T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 362
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
+L+DMYAKCG+IEAA VF + L +W AMI+G A+HG+ A F KM +G +P
Sbjct: 363 SLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 422
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
D F+ +L+AC +SG + L + F SM DY I P ++H+ +++LL G +A
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEM 482
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
I MP PD VIW +L AC+ H + ++ + Q+ + P
Sbjct: 483 IRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPETP 526
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/431 (22%), Positives = 179/431 (41%), Gaps = 82/431 (19%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLIS---------------SASLHKS------- 78
S + ++ +QIH ++ + T LIS S H+
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160
Query: 79 ---------IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
I+ A +FD K++ +N +I G AE +++ + F M++ +VRP+
Sbjct: 161 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 220
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T V + A + LGR +H I G + + L D+Y + G+ A +F+
Sbjct: 221 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEG 280
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--------------------- 228
K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 281 LSYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336
Query: 229 -NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
++ W+ SLID + + GD++ A ++F+ M + + SW AMI
Sbjct: 337 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 396
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
GF+ +G+A A +F +M G+ +D T V LSAC+ G L+ G + +S D+
Sbjct: 397 FGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS-QDYK 455
Query: 329 LKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + ++D+ CG EA ++ E D + W +++ +H E Y
Sbjct: 456 ITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYA 515
Query: 386 KKMMYSGTEPD 396
+ ++ EP+
Sbjct: 516 QNLI--KIEPE 524
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 130/308 (42%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H I H ++ +I LI S
Sbjct: 212 MKTNVRPDESTMVT-VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 270
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ + K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + + L DMY + G A +VFD ++ S
Sbjct: 331 CAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS 390
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G A +LF M K + ++V L+ G L +
Sbjct: 391 S----WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHI 446
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M + ++ + MI+ G ++A M M + + S L AC
Sbjct: 447 FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM---PMEPDGVIWCSLLKACK 503
Query: 308 KVGALEAG 315
+E G
Sbjct: 504 MHNNVELG 511
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 287/566 (50%), Gaps = 69/566 (12%)
Query: 13 IAPTTNIKSSH---KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
I+ N++ H P+ SL+ S KQL+QIHAQ++ +++ + ++
Sbjct: 11 ISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI 70
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPN 128
A L K YA F + + FNV+IRGL+ + S F ++ L ++PN
Sbjct: 71 ---ADL-KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPN 126
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
LTYPF+ + ++L + GR HC +++ G++ D V L MY + GK A KVFD
Sbjct: 127 NLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFD 186
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
E +K+ ++ WN +I+G SK+ + +AV LF G P +
Sbjct: 187 EISQKD----LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
Query: 229 --NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ +WV +LI + + GDL A +F+ M +K V+W AMI
Sbjct: 243 DLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMIT 302
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G++QNG +E+A+ +F M + + T++ LSACA +GAL+ G +V Y S F
Sbjct: 303 GYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+GTALVDMYAKCG+++ A VF K+ ++W AMI LA HG+ ++A+ FK MM
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMM 422
Query: 390 YSG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
G P+ F+ +L+AC ++G V F M + + P ++H++ +V+L SR G
Sbjct: 423 NEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAG 482
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK------IALQSSCSLNLSIPQA 501
+++A +F+ MPE PD VI GAL AC+ K+ I++ + L+ S S N I
Sbjct: 483 HLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSK 542
Query: 502 M----------SYCQTFMQQKGDGRT 517
+ + + M+QKG +T
Sbjct: 543 LYANLRRWDDSARMRMLMKQKGVSKT 568
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 175/388 (45%), Gaps = 48/388 (12%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
+N+ + A+ + +K NN+T + + + + R H +I L +
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
+ LI+ + + A +FD + K+L +N +I G ++ H + F M+
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGF 224
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+PN ++ V + L L LG + +V++ + + F+ L MY + G A +
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARR 284
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------------------- 226
+FD +K+K + WN +I G ++ G +A++LF M
Sbjct: 285 IFDSMKKKDK----VTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340
Query: 227 --------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ +V +L+D + + G L A +F MP K VSW A
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNA 400
Query: 267 MINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
MI+ + +G+A++ALA+F M++ G V ND T V LSAC G ++ G R+ + +S
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMS- 459
Query: 325 NDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ FGL I + +VD++++ G++E A
Sbjct: 460 SSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 162/499 (32%), Positives = 259/499 (51%), Gaps = 48/499 (9%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLH 95
+ + QL+QIHAQ++ LF +++++ +LH S + YA +F+
Sbjct: 47 LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTF 106
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
N +IRG + + I + M+ + P+R T+P + KS +L G+ LHC
Sbjct: 107 TCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHS 163
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
K G DA+++ L +MY G A KVFD K ++SV+ W +I ++
Sbjct: 164 TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD----KMVNKSVVSWATMIGAYAQWDLP 219
Query: 216 RKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE-------------------- 251
+A++LF M K N + V+++ R DL+ A +
Sbjct: 220 HEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSAL 279
Query: 252 ---------------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
LF +MPEK + W MING ++ + E+AL++F +M +GV+ +
Sbjct: 280 MDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDK 339
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+ S L AC +GALE G +H YI + A+GTALVDMYAKCG+IE+A VF E
Sbjct: 340 VTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE 399
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
EKD++TWTA+I GLA+ G+ +A++ F +M S +PD F+ +L AC ++G V
Sbjct: 400 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 459
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ +F+SM Y I+PS++H+ +V++L R G++ +A + I MP PD+ + L ACR
Sbjct: 460 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 519
Query: 477 THKDTKIAKIALQSSCSLN 495
H + +A+ A Q L+
Sbjct: 520 IHGNLVVAERAAQQLIELD 538
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 174/408 (42%), Gaps = 47/408 (11%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
SL S + +Q+H + + I L++ S + A +FD K++
Sbjct: 145 SLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ +I A+ I F M SV+PN +T V + A L + +H I
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYI 264
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
++G+ + + L D+Y + G A +F++ PEKN + WN++ING +
Sbjct: 265 DETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKN----LFCWNIMINGHVEDSDY 320
Query: 216 RKAVELFGMMP---------------------------------------KKNVASWVSL 236
+A+ LF M + +VA +L
Sbjct: 321 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 380
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+D + + G ++ A +F++MPEK V++WTA+I G + G+ KAL +F +M + V+ +
Sbjct: 381 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLV 353
T V L+AC+ G + G+ N + N +G++ +I +VDM + G I EA L+
Sbjct: 441 ITFVGVLAACSHAGLVNEGIAYFNSMP-NKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 499
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
D ++ IHG A + ++++ + GT L
Sbjct: 500 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVL 547
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 267/473 (56%), Gaps = 12/473 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYAL 83
++ T I+S + S +++Q HA ++ LF + ++L++ A+ + K++ YA
Sbjct: 5 SSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAH 64
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
SI + N N +IR A +S + ++ F ML V P++ ++ FV K+ A+
Sbjct: 65 SILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFC 124
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
GR +H L +KS + D FV L ++Y + G A KV D P ++ + WN
Sbjct: 125 GFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRD----AVSWN 180
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
L++ G + +A LF M ++NV SW +I G+ G +K+A E+F+ MP K VVS
Sbjct: 181 SLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVS 240
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
W AM+ ++ G + L +F MLD + R + FT+V+ LSACA +G+L G VH YI
Sbjct: 241 WNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYI 300
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ ++G + TALVDMY+KCG I+ A VF +T ++D+ TW ++I GL++HG + A+
Sbjct: 301 DKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDAL 360
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F +M+Y G +P+G F+ +L+AC + G + A F+ M Y IEP+++H+ +V+L
Sbjct: 361 EIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDL 420
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSS 491
L R+G+ ++A +N++P ++ +L AC+ + +IA L+S+
Sbjct: 421 LGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESN 473
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 5/210 (2%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+ +P + T +++S S S Q +H I H + + T L+ S ID
Sbjct: 268 SAERP-DGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKID 326
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
AL +F + +++ +N +I GL+ + + + F M+ +PN +T+ V +
Sbjct: 327 KALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACN 386
Query: 141 SLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+ LL R L ++ G+E + D+ ++GK A ++ +E P E+
Sbjct: 387 HVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVP---ADEAS 443
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+L L+ C + G L +A + + + N
Sbjct: 444 ILLESLLGACKRFGKLEQAERIANRLLESN 473
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 248/452 (54%), Gaps = 37/452 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASS-RITTQLISSASLH-KSIDYALSIFDHFTPKN 93
+L+ ++ K+L QIH Q++ + ++T L+S A + ++ Y +FD + N
Sbjct: 15 ALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPN 74
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
I+N ++R + ++ ++ + + ML SV N T+PF+ K+ ++LS + +H
Sbjct: 75 TVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHA 134
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I+K G + + L +Y G + A +F++
Sbjct: 135 HIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQ------------------------ 170
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+P +++ SW +IDG+++ G+L A ++F+ MPEK V+SWT MI GF +
Sbjct: 171 -----------LPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVR 219
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G ++AL++ QML AG++ + T+ +LSACA +GALE G +H YI N+ + +
Sbjct: 220 IGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVL 279
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G L DMY KCG +E A LVF + ++K + WTA+I GLAIHG+ +A+ +F +M +G
Sbjct: 280 GCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGI 339
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ F AILTAC ++G + + F+SM Y I+PS++H+ +V+L+ R G + +A
Sbjct: 340 NPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAR 399
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
FI MP P+ IWGAL AC+ HK ++ K
Sbjct: 400 EFIESMPVKPNAAIWGALLNACQLHKHFELGK 431
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 244/460 (53%), Gaps = 39/460 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+ I+ L+H++ + L QIHA + H L S++I + +S + I YA +IF+H
Sbjct: 9 ESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHTH 68
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLG 148
N+ +FN +I+ + F HF +++++ + P+ T+P + K+ + L LG
Sbjct: 69 HPNILLFNSIIKAHSSFPPFHQSF-HFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLG 127
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ LH + G + V + L ++Y GK A KVFDE
Sbjct: 128 QCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDE------------------- 168
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
M + V W +I+GF + GDL+ +LF++M ++ VVSW MI
Sbjct: 169 ----------------MLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMI 212
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+ +Q + +A +F +ML+ G +D T+V+ L CA++G ++AG +H+Y
Sbjct: 213 SCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLL 272
Query: 329 LKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
K ++G +LVD Y KCGN+EAA VF E +K++++W AMI GL ++G+ E ++ F+K
Sbjct: 273 RKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEK 332
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M G P + F+ +L C ++G V FDSM + + P ++H+ VV+LL R G
Sbjct: 333 MARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCG 392
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V +A + I MP P+ +WGAL ACRTH D ++A+IA
Sbjct: 393 HVKEAYDLIRNMPLMPNAALWGALLSACRTHGDREVAEIA 432
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 248/446 (55%), Gaps = 23/446 (5%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
+ + L+Q+HAQ+I +L+ S+ S H+ +DYA IF N +N L
Sbjct: 23 TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTL 82
Query: 101 IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
IR L+E++ + F+ M+ SV PN T+P V K+ L GR +H L VK G
Sbjct: 83 IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFG 142
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
++ D FV ++ MY+ G A ++F V ++GC I ++ V
Sbjct: 143 LDSDEFVVSNVVRMYLSCGVMEDAHRLF-------------YRRVFVDGCDGIRDKKRRV 189
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ +V W +IDG++R G+L+ A LF++MP++ VVSW MI G++Q+G ++
Sbjct: 190 D-------GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKE 242
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
A+ +F +M A V N T+VS L A +++GALE G VH Y N+ G+ +G+AL+D
Sbjct: 243 AVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALID 302
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MYAKCG+IE A VF +++++TW+ +I GLA+HGR + + +F+ M +G P
Sbjct: 303 MYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVT 362
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++ +L+AC ++G V FFD M +EP ++H+ +V+LL R G ++++ I M
Sbjct: 363 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNM 422
Query: 460 PETPDFVIWGALFCACRTHKDTKIAK 485
P PD VIW AL AC+ H + ++ K
Sbjct: 423 PIKPDDVIWKALLGACKMHGNVEMGK 448
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 139/363 (38%), Gaps = 88/363 (24%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++ ++L N+ + ++ A ++FD +++ +NV+I G A++
Sbjct: 187 RRVDGDVVLWNVMIDGYVRI---------GELEVARNLFDEMPQRSVVSWNVMIAGYAQS 237
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
HF+ + F M V PN +T V +++ L L LG+ +H V++ + D +
Sbjct: 238 GHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG 297
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L DMY +K G + KA+++F +PK
Sbjct: 298 SALIDMY-----------------------------------AKCGSIEKALQVFEGLPK 322
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAM 283
+NV +W ++I G G K + FE M GV V++ +++ S G +
Sbjct: 323 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF 382
Query: 284 FFQML---------------------------------DAGVRANDFTVVSALSACAKVG 310
F M+ + ++ +D + L AC G
Sbjct: 383 FDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 442
Query: 311 ALEAGVRVHNYI---SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+E G RV ++ + +D G AL ++YA GN E + V KE D+
Sbjct: 443 NVEMGKRVAEHLMELAPHDSGSY----VALSNIYASLGNWEGVAKVRLMMKEMDVRKDPG 498
Query: 368 MIW 370
W
Sbjct: 499 CSW 501
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 9/242 (3%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P N +T ++ + + + + +H + +N+ + + LI + SI+ AL
Sbjct: 256 PPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 315
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F+ +N+ ++ +I GLA + + + HF M R V P+ +TY + + + L
Sbjct: 316 VFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGL 375
Query: 145 LSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
++ GR +V+ SG+E + D+ + G + ++ P K ++W
Sbjct: 376 VNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD---VIWK 432
Query: 204 VLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ C G + R A L + P + S+V+L + + G+ + ++ M E
Sbjct: 433 ALLGACKMHGNVEMGKRVAEHLMELAPHDS-GSYVALSNIYASLGNWEGVAKVRLMMKEM 491
Query: 260 GV 261
V
Sbjct: 492 DV 493
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 247/444 (55%), Gaps = 23/444 (5%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+ L+Q+HAQ+I +L+ S+ S H+ +DYA IF N +N LIR
Sbjct: 2 QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 61
Query: 103 GLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
L+E++ + F+ M+ SV PN T+P V K+ L GR +H L VK G++
Sbjct: 62 ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 121
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
D FV ++ MY+ G A ++F V ++GC I ++ V+
Sbjct: 122 SDEFVVSNVVRMYLSCGVMEDAHRLF-------------YRRVFVDGCDGIRDKKRRVD- 167
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
+V W +IDG++R G+L+ A LF++MP++ VVSW MI G++Q+G ++A+
Sbjct: 168 ------GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAV 221
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F +M A V N T+VS L A +++GALE G VH Y N+ G+ +G+AL+DMY
Sbjct: 222 EVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMY 281
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG+IE A VF +++++TW+ +I GLA+HGR + + +F+ M +G P ++
Sbjct: 282 AKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYI 341
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC ++G V FFD M +EP ++H+ +V+LL R G ++++ I MP
Sbjct: 342 GLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPI 401
Query: 462 TPDFVIWGALFCACRTHKDTKIAK 485
PD VIW AL AC+ H + ++ K
Sbjct: 402 KPDDVIWKALLGACKMHGNVEMGK 425
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 129/325 (39%), Gaps = 79/325 (24%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++ A ++FD +++ +NV+I G A++ HF+ + F M V PN +T V
Sbjct: 185 ELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLP 244
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+++ L L LG+ +H V++ + D + L DMY
Sbjct: 245 AMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMY----------------------- 281
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+K G + KA+++F +PK+NV +W ++I G G K + FE M
Sbjct: 282 ------------AKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDME 329
Query: 258 EKGV----VSWTAMINGFSQNGEAEKALAMFFQML------------------------- 288
GV V++ +++ S G + F M+
Sbjct: 330 RAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLL 389
Query: 289 --------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI---SCNDFGLKGAIGTAL 337
+ ++ +D + L AC G +E G RV ++ + +D G AL
Sbjct: 390 EESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSY----VAL 445
Query: 338 VDMYAKCGNIEAASLVFGETKEKDL 362
++YA GN E + V KE D+
Sbjct: 446 SNIYASLGNWEGVAKVRLMMKEMDV 470
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 9/242 (3%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P N +T ++ + + + + +H + +N+ + + LI + SI+ AL
Sbjct: 233 PPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 292
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F+ +N+ ++ +I GLA + + + HF M R V P+ +TY + + + L
Sbjct: 293 VFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGL 352
Query: 145 LSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
++ GR +V+ SG+E + D+ + G + ++ P K ++W
Sbjct: 353 VNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD---VIWK 409
Query: 204 VLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ C G + R A L + P + S+V+L + + G+ + ++ M E
Sbjct: 410 ALLGACKMHGNVEMGKRVAEHLMELAPHDS-GSYVALSNIYASLGNWEGVAKVRLMMKEM 468
Query: 260 GV 261
V
Sbjct: 469 DV 470
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 256/509 (50%), Gaps = 76/509 (14%)
Query: 53 QIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
+I LHN +A S++ I + H + YA+S+F N +N +IRG A +S
Sbjct: 2 KIGLHNTNYALSKLLDFCILTPYFH-GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60
Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
S ++ +V+M+ L + PN T+PF+ KS A G+ +H I+K G+ D V L
Sbjct: 61 SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120
Query: 172 DMYVQLGKTRGAFKVFDETPEKN---------------------------KSESVLLWNV 204
MY Q G A KVFD + ++ + V+ WN
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVA--------------------------SWV---- 234
+I+G ++IG ++A+ELF M K +V SW+
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+LID + + G++++A LFE + K V+SW +I G++ ++AL +F
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-----TALVDM 340
+ML G ND T++S L ACA +GA++ G +H YI D LKG I T+L+DM
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYI---DKKLKGIITNTSLQTSLIDM 357
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCGNIEAA+ VF K L + AMI+G A+HGR + A +M G EPD F
Sbjct: 358 YAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITF 417
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +L+AC ++G L F SM DY IEP ++H+ +++LL R G +A IN M
Sbjct: 418 VGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMT 477
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQ 489
PD VIWG+L AC+ HK+ ++ ++ Q
Sbjct: 478 MEPDGVIWGSLLKACKIHKNLELGELIAQ 506
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 179/424 (42%), Gaps = 80/424 (18%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLIS---------------SASLHKSI------ 79
S + ++ +QIHAQI+ + L + T LIS S H+ +
Sbjct: 91 SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150
Query: 80 ----------DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
D A +FD K++ +N +I G AE ++ + F M+++ V+P+
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T V + + LGR +H I G + + L D+Y + G+ A +F+
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--------------------- 228
K+ V+ WN LI G + I + ++A+ +F M K
Sbjct: 271 LQYKD----VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326
Query: 229 -NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
++ W+ SLID + + G+++ A ++F+ + K + S AMI
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
GF+ +G A+ A + +M G+ +D T V LSAC+ G + G ++ ++ D+
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTL-DYR 445
Query: 329 LKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++ + ++D+ + G EA L+ T E D + W +++ IH E
Sbjct: 446 IEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIA 505
Query: 386 KKMM 389
+K+M
Sbjct: 506 QKLM 509
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/447 (32%), Positives = 234/447 (52%), Gaps = 41/447 (9%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
QL+QIHA + + L + + +L+ L YA ++FD +++++N I+ +
Sbjct: 3 QLKQIHAYSLRNGLDHTKFLIEKLLQLPDL----PYACTLFDQIPKPSVYLYNKFIQTFS 58
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
H C + M PN+ ++ F+ + ASL + G+ LH KSG D F
Sbjct: 59 SIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMF 118
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
L DMY +K+G LR A +LF M
Sbjct: 119 AMTALLDMY-----------------------------------AKLGMLRSARQLFDEM 143
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
P +++ +W SLI G+ R G ++ A ELF +MP + V+SWTA+I+G++QNG+ KAL MF
Sbjct: 144 PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFI 203
Query: 286 QML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ + G + N+ ++ S L AC+++GAL+ G R+ Y N F + A+++++A+C
Sbjct: 204 GLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARC 263
Query: 345 GNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
GNIE A VF E K +L +W MI GLA+HGR A+Q + +M+ PD F+ +
Sbjct: 264 GNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGL 323
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V F+SM + + P ++H+ +V+LL R G++ +A N I MP P
Sbjct: 324 LLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAP 383
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQS 490
D VIWG L AC H + ++ ++A +S
Sbjct: 384 DSVIWGTLLGACSFHGNVELGEVAAES 410
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 167/490 (34%), Positives = 261/490 (53%), Gaps = 31/490 (6%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N+ SH P+ L +S + L+ +HAQIILH L + +LIS ++
Sbjct: 110 NVNGSHCPAR---------LCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDD 160
Query: 78 SID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ D YA +FD N ++N LIRG + + + F M+ + PN T PFV
Sbjct: 161 AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFV 220
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ S +H L +K G+ FV+ L +YV G A K+FD+ +K
Sbjct: 221 LKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL 280
Query: 196 SE------------SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
+++ N L + +K G L A +F +KNV SW S+I + +
Sbjct: 281 VSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQH 340
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G ++ A ++F+QMP K VVSW +MI+ + + G+ +AL +F +M ++ V ++ T+VS L
Sbjct: 341 GSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSIL 400
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGT----ALVDMYAKCGNIEAASLVFGETKE 359
+AC+++G L G ++HNYI N KGA G +L+DMYAKCG + A +F E
Sbjct: 401 AACSQLGDLVMGKKIHNYILSN----KGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPG 456
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
K+L++W +I LA+HG +AI+ F++M GT PD +L+AC +SG V + L +
Sbjct: 457 KNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYY 516
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
FD M Y + ++H+ +V+LL R G + +A+ I +MP PD V+WGAL ACR H
Sbjct: 517 FDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHG 576
Query: 480 DTKIAKIALQ 489
+ +I K L+
Sbjct: 577 NVEIGKQILK 586
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 10/459 (2%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHF 89
++SL+ ++ Q+ QIHA II +L F +++ +L + +S + + YA S+FD
Sbjct: 6 VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLL-YARSVFDEI 64
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLG 148
+ I+N +IR + + Q +S F M P + + V ++ L G
Sbjct: 65 PSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNG 124
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ LH ++K G+ D FV L +MY + G A + DE + ++ +NVL+
Sbjct: 125 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPD----LVPYNVLLAE 180
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
++G + A +LF MP++++ SW ++I G GD+ A +LF++ E+ ++SW++MI
Sbjct: 181 YVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMI 240
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+++ ++ +AL +F +M A V + T+VS LSAC VGAL G +H I N
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE 300
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +GT+LVDMYAKCG+I+ + VF +D+ W+AMI GLA HG E A+ +F KM
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+ F+ +L+AC + G V +F SM Y + P ++H+ VV++L R G+
Sbjct: 361 ISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGR 420
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ +A+ I MP PD ++W AL ACR +K+ +IA+ A
Sbjct: 421 LQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEA 459
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 243/463 (52%), Gaps = 40/463 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTP 91
+ISL+ S +L++IHA + + I ++L+ S+ S + +DY+ + +
Sbjct: 16 LISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPN 75
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N LIR + + I+ F+ ML+ V P+ LTYPF+ K+ + L LG +
Sbjct: 76 PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 135
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H IVKSG E D F++ L MY A KVFDE
Sbjct: 136 HVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDE---------------------- 173
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
MP+KN+ +W +++DG+ + GDL A E+F MPEK VVSW+++I+G+
Sbjct: 174 -------------MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGY 220
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ +A+A+F +M G AN+ T+VSAL ACA +GALE G +H YI N+ L
Sbjct: 221 VKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTI 280
Query: 332 AIGTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ T+LVDMYAKCG I A VF +E D+L W A+I GLA HG ++A+ F +M
Sbjct: 281 VLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMK 340
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G PD +L +L+ C + G V+ A FFD +R I P V+H+ +V+ LSR GQV
Sbjct: 341 MVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMI-PKVEHYACMVDALSRAGQV 399
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
+A F+ +MP P + GAL C H + K + + +C
Sbjct: 400 SEAYQFLCQMPVQPTSSMLGALLSGCMKHGNAGHCKSSRKEAC 442
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/466 (34%), Positives = 254/466 (54%), Gaps = 11/466 (2%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
I+ ++S++ S +LRQIHAQ+I NL ++LI+ SL +DYA S+
Sbjct: 4 ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
F N IF LI+G ++ S+ + + ML + + + P V K+ L
Sbjct: 64 FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
GR +H ++K+ + +D FV + MY+ G+ A +VFD P ++ V+ WN
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD----VVSWN 179
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+I G K G + A ELF MP++++ S ++IDG+ + G + A ++FE M +K VV+
Sbjct: 180 SMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVT 239
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT+MI+ + QN KAL +F +ML G+R + +VS LSA A +G +E G +H Y+S
Sbjct: 240 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 299
Query: 324 CNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
N L G IG+AL+DMY+KCG IE A VF + +++ W +MI GLAIHG +A
Sbjct: 300 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 359
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F +M EP+ FL +L+ C + G V+ +F+SM Y I P ++H+ +++
Sbjct: 360 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 419
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G+++ AL I MP D + W A+ A H +I K A
Sbjct: 420 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSA 465
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 261/507 (51%), Gaps = 46/507 (9%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+ E H+ SL H + ++++HAQ++ L R ++LI+S +L + + +F
Sbjct: 102 LVEEHLASLPHGLPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSA 161
Query: 89 FTPKNLH-----IFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASL 142
+ N L+R A NS + ++ FV M LR + + TY F+ K++A+
Sbjct: 162 AAAPPFAPSTALLANTLLRAYALNSLPHAALAVFVDMPLR---QRDTFTYSFLIKALATA 218
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---------------------------- 174
+ + R H + K G D FV L D Y
Sbjct: 219 GVTPV-RAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAM 277
Query: 175 ---VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
V+ G+ A +FDE PEK+ + WN +++G +K G +A ELF MP +NV
Sbjct: 278 AAMVRKGEVDAARSMFDEMPEKD----TVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVV 333
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SW +++ + +KGD++ A +F++MP K +V+WT M++ +Q G +A +F +M +A
Sbjct: 334 SWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAA 393
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ + VVS L+ACA+ G L G R+H ++ G + AL+DM+ KCG + A
Sbjct: 394 IELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRAD 453
Query: 352 LVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F E EKD ++W +I G A+HG E+A+ F +M G PD + +L+AC +
Sbjct: 454 YIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHM 513
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF +M DY I+P ++H+ +V+LL R G + +A++ I MP P+ VIWG+
Sbjct: 514 GLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGS 573
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L ACR HK+ + A++A +L S
Sbjct: 574 LLSACRLHKNVEYAELAANELSNLQPS 600
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 254/462 (54%), Gaps = 41/462 (8%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSI 85
NI T ++SL+ S +L+++HA I + L +++S ++L S IDY+ +
Sbjct: 12 NINGT-LLSLLDKCKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRV 70
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F + + +N++IRG + + + +S F+ MLR V P+ LTYPF+ K+ A LS
Sbjct: 71 FSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQ 130
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H I+K+G E D F++ L MY G A KVF+
Sbjct: 131 KSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFES---------------- 174
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
M KN+ SW S++DG+ + G++ A ++FE M E+ V SW+
Sbjct: 175 -------------------MQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWS 215
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+ I+G+ + GE +A+A+F +M G +AN+ T+VS LSACA +GAL+ G +H YI N
Sbjct: 216 SFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDN 275
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVF-GETK-EKDLLTWTAMIWGLAIHGRYEQAIQ 383
+ + T+LVDMYAKCG IE A VF G +K + D+ W AMI GLA HG E++++
Sbjct: 276 LLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLK 335
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
FK+M +G D +L +L AC + G VK A NFF+S+ + P+ +H+ +V++L
Sbjct: 336 LFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAWNFFESL-VKRGMTPTSEHYACMVDVL 394
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+R GQ+ A FI ++P P + GA+F C H++ +A+
Sbjct: 395 ARAGQLTTAYQFICQIPIEPTASMLGAIFSGCINHRNFDLAE 436
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 222/388 (57%), Gaps = 35/388 (9%)
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV---RVHL---------------- 170
+TYPFV K+ S+ G +H +VKSG E D+++ +HL
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 171 ------------ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
D YV+ G+ VFD ++ V+ WN +ING + +G + +A
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRD----VISWNTIINGYAIVGKIDEA 116
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
LF MP++N+ SW S++ GF++ G++++A LF +MP + VVSW +M+ ++Q G+
Sbjct: 117 KRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 176
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+ALA+F QM GV+ + TVVS LSACA +GAL+ G+ +H YI+ N + +GTALV
Sbjct: 177 EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 236
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG I A+ VF + KD+L W +I G+AIHG ++A Q FK+M + EP+
Sbjct: 237 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDI 296
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+A+L+AC ++G V D M Y IEP V+H+ V++LL+R G +++A+ I
Sbjct: 297 TFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGT 356
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKI 486
MP P+ GAL CR H + ++ ++
Sbjct: 357 MPMEPNPSALGALLGGCRIHGNFELGEM 384
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 124/272 (45%), Gaps = 31/272 (11%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+++ A +F +++ +N ++ A+ ++ F M + V+P T +
Sbjct: 143 NVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 202
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A L L G LH I + +E ++ V L DMY + GK A +VF+ +S+
Sbjct: 203 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM----ESK 258
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
VL WN +I G + G++++A +LF M + +V ++V+++ G + + +L
Sbjct: 259 DVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLL 318
Query: 254 EQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ M E V + +I+ ++ G E+A+ + M + N SAL
Sbjct: 319 DCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM---PMEPNP----SAL----- 366
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
GAL G R+H +F L +G L+++
Sbjct: 367 -GALLGGCRIH-----GNFELGEMVGKRLINL 392
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
TE ++SL+ + L + +H I + + +S + T L+ + I A +F
Sbjct: 193 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 252
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K++ +N +I G+A + H + F M SV PN +T+ + + + ++
Sbjct: 253 NAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVD 312
Query: 147 LGRG-LHCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSE-S 198
G+ L C+ G+E YD + D+ + G A ++ P E N S
Sbjct: 313 EGQKLLDCMSSSYGIEPKVEHYDCVI-----DLLARAGLLEEAMELIGTMPMEPNPSALG 367
Query: 199 VLLWNVLINGCSKIGYL 215
LL I+G ++G +
Sbjct: 368 ALLGGCRIHGNFELGEM 384
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 243/451 (53%), Gaps = 24/451 (5%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFN 98
S + + L+Q+HA I ++I + + IDYA ++F N +N
Sbjct: 28 SCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWN 87
Query: 99 VLIRGLAE--NSHFQS-CISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++R LAE + H QS + F ML V+PNR T+P V K+ A S L G+ +H L
Sbjct: 88 TILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
IVK G D FV +L MYV A+ +F + V +G ++
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV------------VDFDGSCQM-- 193
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
EL NV W +IDG +R GD+K A LF++MP++ VVSW MI+G++QN
Sbjct: 194 -----ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G +A+ +F +M + + N T+VS L A A++GALE G +H Y N + +G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+ALVDMY+KCG+I+ A VF +++ +TW+A+I A+HGR E AI +F M +G
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ ++ IL+AC ++G V+ +FF M ++P ++H+ +V+LL R G +++A
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAK 485
I MP PD VIW AL AC+ HK+ K+ +
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGE 459
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 33/341 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R+ ++L N+ ++ I SA ++FD +++ +NV+I G A+N
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAK---------NLFDEMPQRSVVSWNVMISGYAQN 248
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
HF I+ F M ++ PN +T V ++A + L LG+ +H K+ +E D +
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L DMY + G A +VF+ P++N + W+ +I + G A+ F +M K
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKRN----AITWSAIIGAFAMHGRAEDAIIHFHLMGK 364
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
V +++ ++ G +++ F M + + + M++ + G E
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN---YISCNDFGLKGAIGT 335
+A + M + +D + L AC L+ G RV ++ +D G
Sbjct: 425 EAEELIRNM---PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSY----V 477
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
AL ++YA GN EA + V + K D+ W + IHG
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSW-IEIHG 517
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 11/240 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI ++SS+ N +T ++ I + + + IH + + + + L+
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S SID AL +F+ +N ++ +I A + + I HF M + V PN +
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
Y + + + L+ GR +VK G++ + D+ + G A ++
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433
Query: 191 PEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
P + ++W L+ C K+G R A L + P + S+V+L + + G+
Sbjct: 434 PIEPDD---VIWKALLGACKMHKNLKMGE-RVAETLMELAPHDS-GSYVALSNLYASLGN 488
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 232/421 (55%), Gaps = 8/421 (1%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHS--SNSTKQLRQIHAQIILHNLFASSRITT 67
TT P + +KP++ +T+ I+ L++S + S + L+QIHA I+ F ++
Sbjct: 6 TTTHLPYHLSPAENKPTSKLTQKTILDLLNSKCNASFQYLKQIHAVILRSGHFEDHYVSG 65
Query: 68 QLISS-ASLH-KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
L+ A+ H K+ID A ++FDH N+ ++N++I+ +N I + M+ +
Sbjct: 66 TLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANA 125
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN+ TYP + K+ + G LH ++K G+ D +R MY LG A +
Sbjct: 126 RPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARR 185
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
+ DE E + V+ +N +I+G K G + A ELF M ++V SW ++ G + G
Sbjct: 186 MLDEDGESD----VICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGM 241
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+K+A ELF M EK +SW++MI+G+ + G ++AL +F M + +R F + S L+A
Sbjct: 242 VKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAA 301
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA +GAL+ G +H Y+ N L +GTALVDMYAKCG ++ A VF KEK++ TW
Sbjct: 302 CANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTW 361
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI GLA+HGR E AI+ F KM + F+ +L AC + G V LN DSM
Sbjct: 362 NAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLLNACAHKGMVDEGLNILDSMEK 421
Query: 426 D 426
D
Sbjct: 422 D 422
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 237/447 (53%), Gaps = 44/447 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +R LA+ F +S + MLR RPN T+PF KS A+LSL LG H I
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CS 210
K G ++ FV+ L MY + A KVF+E K + +N L++G CS
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL--TVCYNALVSGYVSNSKCS 134
Query: 211 KI----------GYLRKAVELFGMMP-------------------KKNVASWVSLIDGF- 240
+ G +V L G++P K S VS+++ F
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194
Query: 241 ---MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
M+ G + A +LF++MP KG++SW AM++G++QNG A L ++ M GV +
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+V LS+CA +GA G V I + F + AL++MYA+CGN+ A VF
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+ L++WTA+I G +HG E A+Q FK+M+ SG EPDGT F+ +L+AC ++G L
Sbjct: 315 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+F M+ +Y +EP +H++ +V+LL R G++ +A I MP PD +WGAL AC+
Sbjct: 375 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 434
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSY 504
HK+ ++A++A + L P+ + Y
Sbjct: 435 HKNVELAELAFERVIELE---PENIGY 458
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 14/297 (4%)
Query: 1 MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G+V N + + A+ + P N++T +I S + + +H + +
Sbjct: 124 VSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 183
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + I+ S++YA +FD K L +N ++ G A+N + + +
Sbjct: 184 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 243
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M V P+ +T V S A+L S+G + I SG + F+ L +MY + G
Sbjct: 244 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGN 303
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
A VFD PE+ +++ W +I G G+ AV+LF M + + ++V
Sbjct: 304 LTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 359
Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++ G + E F+ M E G ++ M++ + G ++A + M
Sbjct: 360 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESM 416
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 258/501 (51%), Gaps = 48/501 (9%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSAS 74
+K +KP I+S + + S +L Q+H +I + N+ SR+ ++
Sbjct: 1 MKKHYKP--------ILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLI-DFCTTCP 51
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
++ YA S+F+ +++I+N +IRG + + + + + MLR P+ T+P+
Sbjct: 52 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 111
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V K+ + L + G +H +VK+G E + +V L MY+ G+ +VF++ P+ N
Sbjct: 112 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLN 171
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------------- 228
V+ W LI+G A+E F G+ P +
Sbjct: 172 ----VVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQS 227
Query: 229 ----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
NV SLID + + GD++ A LF+ MPE+ +VSW ++I G+SQNG+AE+A+ MF
Sbjct: 228 KFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMF 287
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
MLD G+ + T S + A G + G +H Y+S F AI ALV+MYAK
Sbjct: 288 SDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKT 347
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAI 403
GN E+A +F + ++KD + WT +I GLA HG +A+ F++M G PDG +L +
Sbjct: 348 GNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGV 407
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V+ +F MR Y +EP+V+H+ +V++LSR G+ ++A + MP P
Sbjct: 408 LYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQP 467
Query: 464 DFVIWGALFCACRTHKDTKIA 484
IWGAL C H++ +A
Sbjct: 468 TANIWGALLNGCEIHENLDLA 488
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 238/455 (52%), Gaps = 38/455 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTP 91
I+ + S + K L QIHAQ I +F+ + + ++++S A+L H SI YA +F
Sbjct: 38 ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRG 150
++ I N LIR A + + + + M SV P+ T+P + K+ + + L LG
Sbjct: 98 PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H + K G + V L MY G A VFD T
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT-------------------- 197
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
P+ + ASW +I G+++ G K A +FE MP++ VVSW+ MING
Sbjct: 198 ---------------PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMING 242
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ Q ++ L +F M+ + N+ +V+ALSACA +GA+E G + Y+ + L
Sbjct: 243 YVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLT 302
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+GTAL+DMY+KCG++E A VF + KEK++L W+AMI GLAI+G+ + A+ F +M
Sbjct: 303 VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEM 362
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G +P+ F+ IL AC +S V +FF SM Y ++P+ HH +V+L R G +D
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A I MP P+ IWGAL ACR H DT++ +
Sbjct: 423 QAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGE 457
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 46/332 (13%)
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
S Q+ +S L I+ A +FD + +N++I G + F+S F M
Sbjct: 174 SNFLVQMYASCGL---IESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAM-- 228
Query: 123 LSVRPNR--LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
P+R +++ + S G GL ++ +E + V V+ LG
Sbjct: 229 ----PDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAM 284
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
+ KN +V L LI+ SK G + +A+E+F M +KNV +W ++I+G
Sbjct: 285 EQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGL 344
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
G K A LF QM + GV+ N+ T +
Sbjct: 345 AINGQGKDALNLFSQMEMQ-------------------------------GVKPNEVTFI 373
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETK 358
L+AC+ ++ G + ++ + +GLK +VD+Y + G ++ A V
Sbjct: 374 GILNACSHSKLVDEGCSFFHSMT-SIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMP 432
Query: 359 EK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
K + W A++ IHG E Q K+++
Sbjct: 433 FKPNSAIWGALLNACRIHGDTELGEQVGKRLL 464
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 169/555 (30%), Positives = 269/555 (48%), Gaps = 76/555 (13%)
Query: 21 SSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASL 75
S P + H ++L+ + + + L+QIH+QII LHN FA S++ + S
Sbjct: 17 SDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIE--FCAVSP 74
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H + YALS+F N I+N +IRGL+ + + ++V M+ PN T+P +
Sbjct: 75 HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN- 194
KS + G+ +H ++K G+E++AFV L +MY Q G+ A VFD++ ++
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194
Query: 195 --------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
V+ WN +I+G ++ G + +A+ F M +
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254
Query: 229 NVA---------------------------SWVS-------------LIDGFMRKGDLKK 248
V SW+ LID +++ GDL++
Sbjct: 255 KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEE 314
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LFE++ +K VVSW MI G++ ++AL +F +M+ + + ND T +S L ACA
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374
Query: 309 VGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+GAL+ G VH Y+ N +K A+ T+L+DMYAKCG++ A +F K L TW
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI G A+HG + A+ F +M G PD F+ +LTAC ++G + L +F SM D
Sbjct: 435 AMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQD 494
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y + P + H+ +++L R G D+A + M PD IW +L ACR H+ ++A+
Sbjct: 495 YKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAES 554
Query: 487 ALQSSCSLNLSIPQA 501
+ L P A
Sbjct: 555 VAKHLFELEPENPSA 569
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 166/515 (32%), Positives = 256/515 (49%), Gaps = 66/515 (12%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
LI S KQL+ +HAQIILH L +L+SS+ + + YA +FD N +
Sbjct: 42 LIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFM 101
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN LI+G + +S + + M+ + PN+ T PFV K+ A+ S LG +H
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSF 161
Query: 157 KSGVEYDAFVRVHLADMYV-------------------------------QLGKTRGAFK 185
K G+ A V+ + ++YV ++G++ A
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVL 221
Query: 186 VFDETPEKNKSESV-----------------------------------LLWNVLINGCS 210
+F E E V ++ N L++ +
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYA 281
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G L+ A +F M K+V SW +I+ + G + A E F QMP K VVSW ++I
Sbjct: 282 KCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWC 341
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
Q G +A+ +F++M D+GV AND T+V+ LS+C+ +G L G + H+YI N+ L
Sbjct: 342 HVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLS 401
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ A++DMYAKCG ++ A VF EK+ ++W +I LA+HG ++AI+ F+KM
Sbjct: 402 ATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQA 461
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG PD F +L+AC +SG V ++F+ M + I P V+H+ +V+LL R G +
Sbjct: 462 SGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLG 521
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A++ I KMP PD V+W AL ACRT+ + I K
Sbjct: 522 EAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGK 556
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 162/392 (41%), Gaps = 70/392 (17%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A +FD + + L +N +I G ++ + + F M + + P+ T +
Sbjct: 185 ITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSV 244
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---- 194
LGR +H +V +G+E D+ V L DMY + G + A VFD+ +K+
Sbjct: 245 STKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSW 304
Query: 195 -----------------------KSESVLLWNVLINGCSKIGYLRKAVELF------GMM 225
++V+ WN +I + G +AV+LF G+M
Sbjct: 305 TCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVM 364
Query: 226 PK--------------------KNVASWV-------------SLIDGFMRKGDLKKAGEL 252
K S++ ++ID + + G L+ A ++
Sbjct: 365 ANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDV 424
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F MPEK VSW +I + +G ++A+ MF +M +GV ++ T LSAC+ G +
Sbjct: 425 FFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLV 484
Query: 313 EAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMI 369
+ G ++ FG+ + +VD+ + G + EA SL+ + D++ W+A++
Sbjct: 485 DTGQHYFEIMNLT-FGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALL 543
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+G Q K+++ G G L
Sbjct: 544 GACRTYGNLAIGKQIMKQLLELGRYNSGLYVL 575
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 249/460 (54%), Gaps = 24/460 (5%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
+ I + S ++L+Q+HA ++ + I T+++ S+ S + I YALS+FD +
Sbjct: 19 VPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78
Query: 93 NLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N +N +IR LAE + H + + + +V PN+ T+P V K+ A ++ L+ G+
Sbjct: 79 NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H L++K G+ D FV +L MYV G A +F E ++
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEG------------VDDVR 186
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + E NV ++DG+ R G+LK A ELF++M ++ VVSW MI+G
Sbjct: 187 NLVRDERGREF-------NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISG 239
Query: 271 FSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
++QNG ++A+ +F +M+ G V N T+VS L A +++G LE G VH Y N +
Sbjct: 240 YAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRI 299
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+G+ALVDMYAKCG+IE A VF + +++TW A+I GLA+HG+ Y +M
Sbjct: 300 DDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME 359
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G P ++AIL+AC ++G V +FF+ M ++P ++H+ +V+LL R G +
Sbjct: 360 KCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYL 419
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
++A I MP PD VIW AL A + HK+ KI A +
Sbjct: 420 EEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAE 459
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 129/299 (43%), Gaps = 18/299 (6%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A +FD +++ +NV+I G A+N ++ I F M+++ V PNR+T V +++
Sbjct: 218 ARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAIS 277
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L +L LG+ +H K+ + D + L DMY + G A +VF+ P+ N V+
Sbjct: 278 RLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNN----VI 333
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
WN +I G + G M K ++ ++++++ G + + F M
Sbjct: 334 TWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDM 393
Query: 257 P-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+ + + M++ + G E+A + M ++ +D + L A
Sbjct: 394 VNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNM---PMKPDDVIWKALLGASKMHKN 450
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
++ G+R + GA AL +MYA GN + + V K+ D+ W
Sbjct: 451 IKIGMRAAEVLMQMAPHDSGAY-VALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSW 508
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 38/222 (17%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
SI+ A+ +F+ N+ +N +I GLA + ++ M + + P+ +TY
Sbjct: 316 SIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTY----- 370
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+A LS S H +V G R DM +G K K E
Sbjct: 371 -IAILSACS-----HAGLVDEG-------RSFFNDMVNSVGL-------------KPKIE 404
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLK---KAGELF 253
+ +++ + GYL +A EL MP K + W +L+ ++K +A E+
Sbjct: 405 H---YGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVL 461
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
QM ++ A+ N ++ +G + A+ M D +R +
Sbjct: 462 MQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKD 503
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 263/508 (51%), Gaps = 47/508 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSIDYALSIFDHFTPKNLH 95
L++ +S L +IHA ++ + + ++T+LI +A L ++DYA +FD +++
Sbjct: 35 LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVF 94
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
++N LIRG A+ + ++ + M + P+ T+PFV +S A LS L G+ +HC I
Sbjct: 95 LWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNI 154
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
VK G + D FV+ L MY Q G+T G VF E +N ++ W +I G + Y
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRN----IVSWTAVIAGYVQNRYF 210
Query: 216 RKAV----ELFGMMPKKNVASWVS---------------LIDGFMRK------------- 243
++ + E+ G + N + VS LI G+ K
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNAL 270
Query: 244 -------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
G+++ A LF+ M + +VSW AMI + QN A+ +F +M V +
Sbjct: 271 IALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDY 330
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+VS +SACA +GAL G +H + + +I AL+DMYAKCGNI+ A VF
Sbjct: 331 ITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFER 390
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+ +++WT+MI A HG E A++ F +M G +P+ F A+ TAC +SG V+
Sbjct: 391 LPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 450
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
F+SM DY I P V+H +V+LL R G + +A FI+KMP PD +WGAL +CR
Sbjct: 451 RKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCR 510
Query: 477 THKDTKIAKIALQSSCSLNLSIPQAMSY 504
H + ++A++ + L L PQ +++
Sbjct: 511 IHSNLELAELVAE---KLFLLDPQTVTF 535
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 15/239 (6%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
IT +IS S + R +H + L + IT LI + +ID A +F+
Sbjct: 331 ITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFER 390
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+++ + +I A + H + + F M V+PN T+ V + L+ G
Sbjct: 391 LPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 450
Query: 149 RG-----LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
R + + GVE+ A + D+ + G A++ D+ P + V +W
Sbjct: 451 RKHFESMMRDYSIMPGVEHCAC----MVDLLGRAGSLMEAYEFIDKMPVE---PDVSVWG 503
Query: 204 VLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ C S + E ++ + V +V + + + G + A L + M E+
Sbjct: 504 ALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEER 562
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/448 (34%), Positives = 240/448 (53%), Gaps = 42/448 (9%)
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR--LSVRPNRLT 131
S+ S+ A +FD +++ +N LI G + + + F ++ +VRP+ +T
Sbjct: 167 SVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVT 226
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
A + L LG+ LH + GV + + DMYV
Sbjct: 227 MIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYV---------------- 270
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
K G L A +F + K V SW ++I G R G ++ A
Sbjct: 271 -------------------KCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARM 311
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF++MPE+ V W A++ G+ QN + ++A+A+F +M ++ V N+ T+V+ LSAC+++GA
Sbjct: 312 LFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGA 371
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G+ VH+YI + L A+GT+LVDMYAKCGNI+ A +F E +K+ LTWTAMI G
Sbjct: 372 LEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICG 431
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA HG ++AI+YF++M+ G +PD F+ +L+AC ++G VK FF M Y +E
Sbjct: 432 LANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLER 491
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
+KH++ +++LL R G +D+A +N MP PD V+WGALF ACR H + + + A
Sbjct: 492 KMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKL 551
Query: 492 CSLNLS-----IPQAMSYCQTFMQQKGD 514
L+ S + A Y + M++K D
Sbjct: 552 VELDPSDSGIYVLLANMYAEANMRKKAD 579
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 162/345 (46%), Gaps = 46/345 (13%)
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQ 255
L + L+ C+++ Y + G + K ++ V +++ + G + A LF++
Sbjct: 122 LTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDE 181
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALE 313
P + VVSW +I G+ ++G +AL +F+++++ G VR ++ T++ A+S CA++G LE
Sbjct: 182 SPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLE 241
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G R+H ++ + A++DMY KCG++E A VF K +++WT MI G A
Sbjct: 242 LGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHA 301
Query: 374 IHGRYE-------------------------------QAIQYFKKMMYSGTEPDGTVFLA 402
G E +AI F +M S +P+ +
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVN 361
Query: 403 ILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+L+AC G +++ + ++ D R ++ SV T +V++ ++ G + KA+ ++
Sbjct: 362 LLSACSQLGALEMGMWVHHYID--RHQLYL--SVALGTSLVDMYAKCGNIKKAICIFKEI 417
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
P+ + + W A+ C H A Q L L P +++
Sbjct: 418 PDK-NALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ-PDEITF 460
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 18/226 (7%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
TT ++ A L D A +FD +++ +N L+ G +N + I+ F M V
Sbjct: 294 TTMIVGHARLGMMED-ARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKV 352
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
PN +T + + + L L +G +H I + + + L DMY + G + A
Sbjct: 353 DPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAIC 412
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDG 239
+F E P+KN L W +I G + G+ +A+E F G+ P + +++ ++
Sbjct: 413 IFKEIPDKN----ALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDE--ITFIGVLSA 466
Query: 240 FMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKA 280
G +K+ + F M EK + ++ MI+ + G ++A
Sbjct: 467 CCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEA 512
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 263/487 (54%), Gaps = 47/487 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLI-SSASLHKSIDYALSIFDHFTPKNLHIF--NVLI 101
K + H +++ NL + + + ++ S+ + + Y + +F H TP N + F N +I
Sbjct: 18 KHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVF-HKTPTNSNTFLYNTMI 76
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
RG+ F + + + M + ++ P+ T+ FV K+ A L+L LG +H L+ K+G +
Sbjct: 77 RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
D FV+ ++ Y + G R A+KVFD+ KN V+ W +I GC + G R+AV+L
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKN----VVSWTGMICGCIEFGKFREAVDL 192
Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
F G+ P +NV SL+D + +
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G +++A +F+ M EK +V W+AMI G++ NG +A+ +FF+M VR + + +V A
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LS+CA +GALE G ++ +F +GT+L+D YAKCG++E A V+ KEKD
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+ + A+I GLA++G+ A F +M G P+ F+ +L C ++G V ++F+S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M D+ + P+++H+ +V+LL+R G +D+A N I MP + ++WG+L CR H++T+
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492
Query: 483 IAKIALQ 489
+A+ L+
Sbjct: 493 LAEHVLK 499
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 242/451 (53%), Gaps = 24/451 (5%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFN 98
S + + L+Q+HA I ++I + + IDYA ++F N +N
Sbjct: 28 SCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWN 87
Query: 99 VLIRGLAE--NSHFQS-CISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++R LAE + H QS + F ML V+PNR T+P V K+ A S L G+ +H L
Sbjct: 88 TILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
IVK G D FV +L MYV A+ +F + V +G ++
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV------------VDFDGSCQM-- 193
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
EL NV W +IDG +R GD+K A LF++MP + VVSW MI+G++QN
Sbjct: 194 -----ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G +A+ +F +M + + N T+VS L A A++GALE G +H Y N + +G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+ALVDMY+KCG+I+ A VF +++ +TW+A+I A+HGR E AI +F M +G
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ ++ IL+AC ++G V+ +FF M ++P ++H+ +V+LL R G +++A
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAK 485
I MP PD VIW AL AC+ HK+ K+ +
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGE 459
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 33/341 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R+ ++L N+ ++ I SA ++FD P+++ +NV+I G A+N
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAK---------NLFDEMPPRSVVSWNVMISGYAQN 248
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
HF I+ F M ++ PN +T V ++A + L LG+ +H K+ VE D +
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L DMY + G A +VF+ P++N + W+ +I + G A+ F +M K
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRN----AITWSAIIGAFAMHGRAEDAIIHFHLMGK 364
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
V +++ ++ G +++ F M + + + M++ + G E
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN---YISCNDFGLKGAIGT 335
+A + M + +D + L AC L+ G RV ++ +D G
Sbjct: 425 EAEELIRNM---PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSY----V 477
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
AL ++YA GN EA + V + K D+ W + IHG
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSW-IEIHG 517
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 11/240 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI ++SS+ N +T ++ I + + + IH + + + + L+
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S SID AL +F+ +N ++ +I A + + I HF M + V PN +
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
Y + + + L+ GR +VK G++ + D+ + G A ++
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433
Query: 191 PEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
P + ++W L+ C K+G R A L + P + S+V+L + + G+
Sbjct: 434 PIEPDD---VIWKALLGACKMHKNLKMGE-RVAETLMELAPHDS-GSYVALSNLYASLGN 488
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 255/469 (54%), Gaps = 37/469 (7%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS-SASLHKSIDYALSIFDHF 89
+T++ L + + K L++IH+Q+I L + +++++ AS I+YA +F
Sbjct: 22 QTYLSMLDKNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQI 81
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLG 148
N+ +N +IRG + +S Q+ IS ++ ML S V+P RLTYP V K+ A L L S G
Sbjct: 82 QNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEG 141
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
LH ++K G+E D+F+R + MYV G T A KVFD + ++ WN +I G
Sbjct: 142 AQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFD----RGMDFDIVAWNTMIMG 197
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+K G L+D R LF++M + VSW +MI
Sbjct: 198 VAKCG----------------------LVDESRR---------LFDKMSLRNAVSWNSMI 226
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G+ +NG AL +F +M + ++FT+VS L+ACA +GA+ G +H+Y+ F
Sbjct: 227 SGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFE 286
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
L + TA++DMY+KCG+I+ A VF + L W +MI GLA++G+ +A+Q F +
Sbjct: 287 LNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVL 346
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
S PD F+A+LTAC ++G V A ++F MR Y I+P +KH + +V++L R G
Sbjct: 347 QSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGL 406
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+++A I M PD +IWG+L +C + + K+AK A LN S
Sbjct: 407 LEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPS 455
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 23/201 (11%)
Query: 30 TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+E ++SL+++ +RQ IH ++ + + T +I S SID A+ +F
Sbjct: 253 SEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVF 312
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ L +N +I GLA N + F + +RP+ +++ V + ++
Sbjct: 313 QSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVD 372
Query: 147 LGRGLHCLI-----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV-- 199
+ L+ +K G++ H + M LG+ + +E E +S V
Sbjct: 373 KAKDYFLLMRDKYKIKPGIK-------HFSCMVDVLGRA----GLLEEAEELIRSMHVDP 421
Query: 200 --LLWNVLINGCSKIGYLRKA 218
++W L+ C K G ++ A
Sbjct: 422 DAIIWGSLLWSCCKYGNIKMA 442
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 265/529 (50%), Gaps = 57/529 (10%)
Query: 24 KPSNNIT------ETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRITTQLISSASLH 76
KPS+ T T + SL +S + T+ L Q+HA + L ++ + T+L + ++
Sbjct: 13 KPSSTSTFDSLQCGTLLQSLTNSKSLTQAL-QLHAHVTTGGTLRRNTYLATKLAACYAVC 71
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ YA IFD KN ++N +IRG A N+ + ++ ML +P+ TYPFV
Sbjct: 72 GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
K+ L L +GR +H L+V G+E D +V + MY + G A VFD ++ +
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNV 230
WN +++G K G R A E+FG M + K +
Sbjct: 192 S----WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEI 247
Query: 231 ASWV----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+V S+ID + + A +LFE + K VVSW ++I+G+ +
Sbjct: 248 HGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKC 307
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G+A +AL +F +M+ G ++ TV+S L+AC ++ AL G V +Y+ + + +G
Sbjct: 308 GDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG 367
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TAL+ MYA CG++ A VF E EK+L T M+ G IHGR +AI F +M+ G
Sbjct: 368 TALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVT 427
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
PD +F A+L+AC +SG V F M DY +EP H++ +V+LL R G +D+A
Sbjct: 428 PDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYA 487
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503
I M P+ +W AL ACR H++ K+A I+ Q LN P +S
Sbjct: 488 VIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELN---PDGVS 533
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 12/214 (5%)
Query: 31 ETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
E +IS++ + N LR + + ++ + + T LI + S+ A +FD
Sbjct: 329 EVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFD 388
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
KNL V++ G + + IS F ML V P+ + V + + L+
Sbjct: 389 EMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDE 448
Query: 148 GRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ + + + VE L D+ + G A+ V + K + +W L+
Sbjct: 449 GKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNED---VWTALL 505
Query: 207 NGCSKIGYLRKAV----ELFGMMPKKNVASWVSL 236
+ C ++ AV +LF + P V+ +V L
Sbjct: 506 SACRLHRNVKLAVISAQKLFELNP-DGVSGYVCL 538
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 168/523 (32%), Positives = 260/523 (49%), Gaps = 79/523 (15%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++SL+ ++ S Q+ QIHAQ ++H L + + +LI LH SIDYA + D
Sbjct: 2 LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLID---LH-SIDYARFVLDQTPSPT 57
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+N LIR + Q+ + ++ MLR S +P+ T+PFV K+ ++L + G +H
Sbjct: 58 DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117
Query: 154 LIVKSGVEYDAFVRVHLADMY-------------------------------VQLGKTRG 182
+++ G D FV L DMY VQ G+
Sbjct: 118 HVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEK 177
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKKNVASWV-- 234
A +F+E P + +V+ W +ING K G + + LF M + N A+ V
Sbjct: 178 ARDLFEEMPMR---RNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCL 234
Query: 235 ---------------------------------SLIDGFMRKGDLKKAGELFEQMPEKGV 261
+LID + + GD++KA +F+ + K +
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNL 294
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
SW A+I G Q G E+A+ ++ M V+ N+ T+V+ LSACA +GALE G VH Y
Sbjct: 295 PSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLY 354
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ N L + TALVDMYAKCG I+ A L+F +T EKD+ W AMI GLA HG +
Sbjct: 355 LGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDS 414
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F +M+ +G +P+ F+ +L+AC +SG V+ F SM + + P ++H+ +V+
Sbjct: 415 LAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVD 474
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
LL R G + +A + M PD +IWGAL ACR H++ ++A
Sbjct: 475 LLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELA 517
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 19/316 (6%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI S ++ A IFD + KNL +N +I G + + I + M S
Sbjct: 265 LVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQS 324
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+PN +T V + A L L LGR +H + ++G++ + + L DMY + GK A
Sbjct: 325 VKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDAC 384
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGF 240
+F +T EK+ V LWN +I G + G R ++ +F M + V +++ ++
Sbjct: 385 LIFVKTSEKD----VALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSAC 440
Query: 241 MRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
G +++ F M +K +S + M++ + G ++A + ML + +
Sbjct: 441 NHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNML---IPPD 497
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ LSAC LE ++ I + D + I L ++YA G + + V
Sbjct: 498 SIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCI--LLSNIYASSGRWKDVARVR 555
Query: 355 GETKEKDLLTWTAMIW 370
+ KEK + + W
Sbjct: 556 RQVKEKRIKKPSGCSW 571
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 106/257 (41%), Gaps = 7/257 (2%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
L AI ++K+ N IT +++S + + R++H + + L + + T
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATA 369
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+ + ID A IF + K++ ++N +I GLA + + ++ F M+R V+PN
Sbjct: 370 LVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPN 429
Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+T+ V + L+ GR + K G+ + D+ + G + A+++
Sbjct: 430 DVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELV 489
Query: 188 DETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
S ++W L++ C + K E N+ + L + + G
Sbjct: 490 QNMLIPPDS---IIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSG 546
Query: 245 DLKKAGELFEQMPEKGV 261
K + Q+ EK +
Sbjct: 547 RWKDVARVRRQVKEKRI 563
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 245/461 (53%), Gaps = 45/461 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTP 91
+ S+ + S L+QIHA +L +L S I +++ A++ S D YA +FD
Sbjct: 19 LASIAENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQ 78
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-------SL 144
N +N +IRG A++S C++ F M + V P+ T+ F+ K+ + + S
Sbjct: 79 PNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPST 138
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L +H + K G FV+ L ++Y G A++VF+ET
Sbjct: 139 LECDE-IHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNET-------------- 183
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
+G +V SW L+ +R G+L+ A ++F+ MPEK VVSW
Sbjct: 184 -------VGV--------------DVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSW 222
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
TAM++G+S+ + +AL +F++M DAG+R ++ T+VS +SAC +G +E G+ VH+YI+
Sbjct: 223 TAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINE 282
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
N FG ++ AL++MYAKCG ++ A VF K K L+TW +MI A HG E A +
Sbjct: 283 NGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFEL 342
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M+ SG PDG FLA+L A + G V F M DY IE S++H+ +V++L
Sbjct: 343 FSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLG 402
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
R G++++A I MP + ++WGAL ACR + D + +
Sbjct: 403 RAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGE 443
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 245/460 (53%), Gaps = 44/460 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQ--LISSASLHKSID---YALSI 85
++L+ S +S L+ IH ++ + ++F +SR+ + ++ HK + YA I
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F NL +FNVLIR + + + ML+ + P+ +T+PF+ K+ + +
Sbjct: 76 FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+G H IV+ G + D +V L MY G A ++F + P ++ V+ W +
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRD----VVSWTSM 191
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+ G K G + A E+F MP +N+ +W +I+G+ + +KA +LFE M +GVV
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV--- 248
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AN+ +VS +S+CA +GALE G R H Y+ +
Sbjct: 249 ----------------------------ANETVMVSVISSCAHLGALEFGERAHEYVVKS 280
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ +GTALVDMY +CG IE A VF E +KD L+W+++I GLA+HG +AI YF
Sbjct: 281 HMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYF 340
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+ G P A+L+AC + G V L +++M+ DY IEP ++H+ +V++L R
Sbjct: 341 SQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGR 400
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
G++ +A NFI KMP P+ I GAL AC+ +K+T++A+
Sbjct: 401 AGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAE 440
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 236/447 (52%), Gaps = 44/447 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +R LA+ F +S + MLR RPN T+PF KS A+LSL LG H I
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CS 210
K G ++ FV+ L MY + A KVF+E K + +N L++G CS
Sbjct: 68 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL--TVCYNALVSGYVSNSKCS 125
Query: 211 KI----------GYLRKAVELFGMMP-------------------KKNVASWVSLIDGF- 240
G +V L G++P K S VS+++ F
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185
Query: 241 ---MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
M+ G + A +LF++MP KG++SW AM++G++QNG A L ++ M GV +
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+V LS+CA +GA G V + + F + AL++MYA+CGN+ A VF
Sbjct: 246 TLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 305
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+ L++WTA+I G +HG E A+Q FK+M+ SG EPDGT F+ +L+AC ++G L
Sbjct: 306 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 365
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+F M+ +Y +EP +H++ +V+LL R G++ +A I MP PD +WGAL AC+
Sbjct: 366 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 425
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSY 504
HK+ ++A++A + L P+ + Y
Sbjct: 426 HKNVELAELAFERVIELE---PENIGY 449
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 14/297 (4%)
Query: 1 MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G+V N + + A+ + P N++T +I S + + +H + +
Sbjct: 115 VSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 174
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + I+ S++YA +FD K L +N ++ G A+N + + +
Sbjct: 175 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 234
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M V P+ +T V S A+L S+G + + SG + F+ L +MY + G
Sbjct: 235 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGN 294
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
A VFD PE+ +++ W +I G G+ AV+LF M + + ++V
Sbjct: 295 LTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 350
Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++ G + E F+ M E G ++ M++ + G ++A + M
Sbjct: 351 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESM 407
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 238/442 (53%), Gaps = 43/442 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIR 102
KQL+QI AQ+I + ++ T+ ++ + D YA +F+ T N ++N +IR
Sbjct: 2 KQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIR 61
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL--HCLIVKSGV 160
+ + + + ML SV N T+PF+ + A +LL++G L H L++K G
Sbjct: 62 AYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLR--ACRNLLAMGEALQVHGLVIKLGF 119
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
D F L +Y G+ A ++FD
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDN------------------------------- 148
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+P+++ SW +IDG+++ GD+K A +F MP K VVSWT++I+G + G++ +A
Sbjct: 149 ----IPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEA 204
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L++ ++M +AG + + S L+ACA +GAL+ G +H Y+ N + IG ALV+M
Sbjct: 205 LSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNM 264
Query: 341 YAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
Y KCG++E A VFG+ K +KD+ WTAMI G AIHGR +A+++F +M G P+
Sbjct: 265 YVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSI 324
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F A+L AC Y G V+ F SM+ Y + PS++H+ +V+LL R G++D+A I K
Sbjct: 325 TFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKK 384
Query: 459 MPETPDFVIWGALFCACRTHKD 480
MP P VIWGAL AC H+D
Sbjct: 385 MPMKPSAVIWGALLKACWIHRD 406
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 126/307 (41%), Gaps = 42/307 (13%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
SS P N+ T ++ + + + Q+H +I + L+ +L I
Sbjct: 81 SSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIH 140
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVS--K 137
A +FD+ ++ +N++I G ++ ++ F+ M L+ V L V +
Sbjct: 141 CARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQ 200
Query: 138 SVASLSL----------------------------LSLGRGLHCLIVKSGVEYDAFVRVH 169
SV +LSL L GR LH ++ +GV+ D +
Sbjct: 201 SVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCA 260
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK- 228
L +MYV+ G A VF + K + V +W +I+G + G +A+E F M ++
Sbjct: 261 LVNMYVKCGDMEEALSVFGKL--KGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREG 318
Query: 229 ---NVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
N ++ +++ G +++ ELF+ M + + M++ ++G ++A
Sbjct: 319 IRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEA 378
Query: 281 LAMFFQM 287
+ +M
Sbjct: 379 KELIKKM 385
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 272/539 (50%), Gaps = 79/539 (14%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTP 91
++SL+ L+QI AQ+I++ L +++LI+ +L +S +DY++ I
Sbjct: 56 LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIEN 115
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLG 148
N+ +NV IRG +E+ + + + MLR RP+ TYP + K A L L SLG
Sbjct: 116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ ++K +E + V M+ G A KVFDE+P ++ ++ WN LING
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRD----LVSWNCLING 231
Query: 209 CSKIGYLRKAVELFGMMPKKNVA--------------------------SWV-------- 234
KIG KA+ ++ +M + V +V
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-------------- 275
+L+D F + GD+ +A +F+ + ++ +VSWT MI+G+++ G
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEE 351
Query: 276 -----------------EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ALA+F +M + + ++ T++ LSAC+++GAL+ G+ +
Sbjct: 352 KDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWI 411
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H YI L A+GT+LVDMYAKCGNI A VF + ++ LT+TA+I GLA+HG
Sbjct: 412 HRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDA 471
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
AI YF +M+ +G PD F+ +L+AC + G ++ ++F M+ + + P +KH+++
Sbjct: 472 STAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSI 531
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+V+LL R G +++A + MP D +WGAL CR H + ++ + A + L+ S
Sbjct: 532 MVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPS 590
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 11/260 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++S+ + IT H +S + IH I ++L + + T
Sbjct: 369 RGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGT 428
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I ALS+F +N + +I GLA + + IS+F M+ + P
Sbjct: 429 SLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 488
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T+ + + ++ GR + KS + ++ H + M LG+ G +
Sbjct: 489 DEITFIGLLSACCHGGMIQTGRDYFSQM-KSRFNLNPQLK-HYSIMVDLLGRA-GLLEEA 545
Query: 188 DETPEKNKSES-VLLWNVLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMR 242
D E E+ +W L+ GC G + + A +L + P + L+DG
Sbjct: 546 DRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSD--SGIYVLLDGMYG 603
Query: 243 KGDL-KKAGELFEQMPEKGV 261
+ ++ + A M E+GV
Sbjct: 604 EANMWEDAKRARRMMNERGV 623
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/500 (31%), Positives = 256/500 (51%), Gaps = 48/500 (9%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSAS 74
+K +KP I+S + + S +L Q+H +I + N+ SR+ ++
Sbjct: 2 MKKHYKP--------ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLI-DFCTTCP 52
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
++ YA S+F+ +++I+N +IRG + + + + + MLR P+ T+P+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V K+ + L + G +H +VK+G E + +V L MY+ G+ +VF++ P+ N
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWN 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-------------------------- 228
V+ W LI+G A+E F M
Sbjct: 173 ----VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQS 228
Query: 229 ----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
NV SLID + + GDL+ A LF+ MPE+ +VSW ++I G+SQNG+AE+AL MF
Sbjct: 229 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 288
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
MLD G+ + T +S + A G + G +H Y+S F AI ALV+MYAK
Sbjct: 289 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKT 348
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAI 403
G+ E+A F + ++KD + WT +I GLA HG +A+ F++M G PDG +L +
Sbjct: 349 GDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGV 408
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V+ +F MR + +EP+V+H+ +V++LSR G+ ++A + MP P
Sbjct: 409 LYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKP 468
Query: 464 DFVIWGALFCACRTHKDTKI 483
+ IWGAL C H++ ++
Sbjct: 469 NVNIWGALLNGCDIHENLEL 488
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 169/417 (40%), Gaps = 64/417 (15%)
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKTRGAFKV 186
P +S+ SL+ L + LH L++KS V + L D + L R F+
Sbjct: 8 PILSQLENCRSLVELNQ-LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------------- 231
D SV +WN +I G S KA+ + M +K +
Sbjct: 67 ID-------CPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119
Query: 232 ----SWVSLIDGFMRK--------------------GDLKKAGELFEQMPEKGVVSWTAM 267
+ S + GF+ K G++ +FE +P+ VV+W ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+GF N A+ F +M GV+AN+ +V L AC R + +
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACG---------RCFDPYFQSKV 230
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
G + T+L+DMYAKCG++ A +F E+ L++W ++I G + +G E+A+ F
Sbjct: 231 GFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLD 290
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G PD FL+++ A G +L + + F++ + +VN+ ++ G
Sbjct: 291 MLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAI-VCALVNMYAKTG 349
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
+ A + E D + W + +H A Q + P ++Y
Sbjct: 350 DAESAKKAFEDL-EKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITY 405
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 135/306 (44%), Gaps = 18/306 (5%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI + + A +FD + L +N +I G ++N + + F+ ML L
Sbjct: 236 LATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLG 295
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ P+++T+ V ++ LG+ +H + K+G DA + L +MY + G A
Sbjct: 296 IAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAK 355
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-----SWVSLIDG 239
K F++ +K+ + W V+I G + G+ +A+ +F M +K A +++ ++
Sbjct: 356 KAFEDLEKKD----TIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 411
Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G +++ F +M E V + M++ S+ G E+A + M V+
Sbjct: 412 CSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTM---PVKP 468
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N + L+ C LE R+ + ++ + L I L ++YAK G L+
Sbjct: 469 NVNIWGALLNGCDIHENLELTDRIRSMVAEPE-ELGSGIYVLLSNIYAKAGRWADVKLIR 527
Query: 355 GETKEK 360
K K
Sbjct: 528 ESMKSK 533
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 243/449 (54%), Gaps = 45/449 (10%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIF-DHFTPKNLHIFNVLI 101
KQ ++ H Q+I++ L +IS ++L S IDYAL + TP + +FN I
Sbjct: 2 KQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTI 61
Query: 102 RGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
RG + S +S + +R LS+ PN T+ F+ + ++ LGR H +++K+
Sbjct: 62 RGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKN 121
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
E D FVR + Y G+ A VFDE+ E +
Sbjct: 122 SFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELD------------------------ 157
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
V SW S+IDG +R G++ +A LF +M E+ +SW MI+G++QNG+ +
Sbjct: 158 -----------VVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPK 206
Query: 279 KALAMF--FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+ALA+F QMLD N +VS LSAC+++GAL+ G VH YI + + A
Sbjct: 207 EALALFREMQMLDQ--EPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAA 264
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMYAKCG+I+ A F ++++D+ +TA I GLA++G E+A+Q F++M G PD
Sbjct: 265 LIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPD 324
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
G ++A+L AC ++G V+ ++F SM + I P + H+ +V+LL R G +++A F+
Sbjct: 325 GVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFV 384
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAK 485
MP PD VIWGAL ACR + + ++ +
Sbjct: 385 ASMPIKPDNVIWGALLGACRVYGNAEMGQ 413
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 117/272 (43%), Gaps = 22/272 (8%)
Query: 261 VVSWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
V + I GFS+ G ++ +F +M + N+FT C+ A + G +
Sbjct: 54 VFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQ 113
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
H + N F + + +++ Y+ CG + A VF E+ E D+++W +MI G +G
Sbjct: 114 FHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGN 173
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+A+ F KM TE + + +++ +GQ K AL F M+ EP+
Sbjct: 174 ILEALSLFSKM----TERNDISWNMMISGYAQNGQPKEALALFREMQM-LDQEPNSAILV 228
Query: 438 VVVNLLSRVGQVDKAL---NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
V++ S++G +D +I K D ++ AL +A A +S
Sbjct: 229 SVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKR 288
Query: 495 NLSIPQ------AMSYC-----QTFMQQKGDG 515
++S AM+ C Q F Q KG+G
Sbjct: 289 DVSAYTAAISGLAMNGCSEEALQLFEQMKGEG 320
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 23/284 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
ALS+F T +N +N++I G A+N + ++ F M L PN V + +
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQ 236
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE-SVL 200
L L G +HC I K V D+ + L DMY + G A + F + +++ S +
Sbjct: 237 LGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAA 296
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
+ + +NGCS+ +A++LF M + ++ S+++++ G ++K F M
Sbjct: 297 ISGLAMNGCSE-----EALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASM 351
Query: 257 -------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
PE + + M++ + G E+A M ++ ++ + L AC
Sbjct: 352 SDVHGIRPE--LDHYACMVDLLGRAGLLEEAEKFVASM---PIKPDNVIWGALLGACRVY 406
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
G E G RV + + +D G L ++YA+ E A V
Sbjct: 407 GNAEMGQRVGSLLVESDQNHDGRY-ILLSNIYAESMKGEDAEQV 449
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 174/544 (31%), Positives = 282/544 (51%), Gaps = 66/544 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-K 92
++ L +S+K L+Q+HAQ+++ + S L+S A K+ YA +F H P
Sbjct: 21 LVFLAKQCSSSKTLQQVHAQMVVKSSIHSP--NNHLLSKAIHLKNFTYASLLFSHIAPHP 78
Query: 93 NLHIFNVLIRGLAEN-SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
N + FN++IR L H+ ++ F M+ LS+ PN T+PF S A+L++LS R
Sbjct: 79 NDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAA 138
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H L+ K + D L MY + G+ A KVFDE P ++ ++ WN +I G +K
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRD----LVSWNSMIAGYAK 194
Query: 212 IGYLRKAVELFGMMPKKN-----------------------VASWV-------------- 234
G R+AVE+FG M +++ + WV
Sbjct: 195 AGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSY 254
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+LI + + GDL A +F+ M + V++W A+I+G++QNG A++A+++F M +
Sbjct: 255 IGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDC 314
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V N T+ + LSACA +GAL+ G ++ Y S F + TAL+DMYAKCG++ +A
Sbjct: 315 VTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQ 374
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWY 409
VF E +K+ +W AMI LA HG+ ++A+ F+ M G P+ F+ +L+AC +
Sbjct: 375 RVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVH 434
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V FD M + + P ++H++ +V+LL+R G + +A + I KMPE PD V G
Sbjct: 435 AGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLG 494
Query: 470 ALFCACRTHKDTKIAKIALQ----------------SSCSLNLSIPQAMSYCQTFMQQKG 513
AL ACR+ K+ I + ++ S NL++ + + + M+QKG
Sbjct: 495 ALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKG 554
Query: 514 DGRT 517
+T
Sbjct: 555 ITKT 558
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 232/432 (53%), Gaps = 41/432 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +R LA HFQ ++ + ML PN T+PF KS ASLSL G LH ++
Sbjct: 24 WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K+G E + FV+ L MY + A KVFDE + + +N LI G S
Sbjct: 84 KTGCEPEPFVQTSLISMYCKCSTIASARKVFDEN--HHSRNLAVCYNALIAGYSLNSRFS 141
Query: 217 KAVELFGMMPKK----NVASWVSLI------------------------DG--------- 239
AV LF M K+ N + + LI DG
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201
Query: 240 --FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
++R G + A +LF+ MPEKG+++W AMI+G++QNG A L ++ +M G+ +
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+V LS+CA +GA AG V I + FG + AL++MYA+CGN+ A +F
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGM 321
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
EK++++WTA+I G +HG+ E A+Q F +M+ S PDG F+++L+AC ++G + L
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGL 381
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+F +M DY ++P +H++ VV+LL R G++++A I M PD +WGAL AC+
Sbjct: 382 YYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKI 441
Query: 478 HKDTKIAKIALQ 489
H++ ++A++A +
Sbjct: 442 HRNVELAELAFE 453
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 178/401 (44%), Gaps = 51/401 (12%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD-HFTPKNLHI-FNVLIRGLAE 106
Q+H +I + T LIS +I A +FD + +NL + +N LI G +
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
NS F + F M + V N +T + A L G LH V+ G++ D V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY------LRKAVE 220
L MYV+ G A K+FD PEK ++ WN +I+G ++ G L + +E
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEK----GLITWNAMISGYAQNGLAGHVLDLYRKME 252
Query: 221 LFGMMPK--------------------KNVASWV-------------SLIDGFMRKGDLK 247
G++P + V + +LI+ + R G+L
Sbjct: 253 FTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLV 312
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
KA +F+ M EK V+SWTA+I G+ +G+ E A+ +F +M+ + + VS LSAC+
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGE-TKEKDLLT 364
G E G+ + D+GL+ + +VD+ + G +E A + G + E D
Sbjct: 373 HAGLTEKGLYYFTAME-RDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
W A++ IH E A F+K++ EP + +L+
Sbjct: 432 WGALLGACKIHRNVELAELAFEKVIE--FEPTNIGYYVLLS 470
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 10/214 (4%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW A + ++ ++AL ++ QML +G N FT A +CA + AG ++H ++
Sbjct: 23 SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQ 380
+ + T+L+ MY KC I +A VF E L + A+I G +++ R+
Sbjct: 83 IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN---FFDSMRFDYFIEPSVKHHT 437
A+ F++M G + L ++ C +G + L S+RF + SV +
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDLSVGN-- 198
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ + R G VD A + MPE + W A+
Sbjct: 199 CLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAM 231
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 31/301 (10%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S+D+A +FD K L +N +I G A+N + + M + P+ +T V
Sbjct: 209 SVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLS 268
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
S A L + GR + I SG ++ F++ L +MY + G A +FD EKN
Sbjct: 269 SCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKN--- 325
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELF 253
V+ W +I G G AV+LF M + A++VS++ G
Sbjct: 326 -VISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG--------- 375
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA---CAKVG 310
+ EKG+ +TAM + E + + AG ++ ++S A G
Sbjct: 376 --LTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWG 433
Query: 311 ALEAGVRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKD 361
AL ++H + + + I L +++++ GN+E V +E+
Sbjct: 434 ALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERK 493
Query: 362 L 362
L
Sbjct: 494 L 494
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 232/432 (53%), Gaps = 41/432 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +R LA HFQ ++ + ML PN T+PF KS ASLSL G LH ++
Sbjct: 24 WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K+G E + FV+ L MY + A KVFDE + + +N LI G S
Sbjct: 84 KTGCEPEPFVQTSLISMYCKCSTIASARKVFDEN--HHSRNLAVCYNALIAGYSLNSRFS 141
Query: 217 KAVELFGMMPKK----NVASWVSLI------------------------DG--------- 239
AV LF M K+ N + + LI DG
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201
Query: 240 --FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
++R G + A +LF+ MPEKG+++W AMI+G++QNG A L ++ +M G+ +
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+V LS+CA +GA AG V I + FG + AL++MYA+CGN+ A +F
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGM 321
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
EK++++WTA+I G +HG+ E A+Q F +M+ S PDG F+++L+AC ++G + L
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGL 381
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+F +M DY ++P +H++ VV+LL R G++++A I M PD +WGAL AC+
Sbjct: 382 YYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKI 441
Query: 478 HKDTKIAKIALQ 489
H++ ++A++A +
Sbjct: 442 HRNVELAELAFE 453
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 168/383 (43%), Gaps = 49/383 (12%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD-HFTPKNLHI-FNVLIRGLAE 106
Q+H +I + T LIS +I A +FD + +NL + +N LI G +
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
NS F + F M + V N +T + A L G LH V+ G++ D V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY------LRKAVE 220
L MYV+ G A K+FD PEK ++ WN +I+G ++ G L + +E
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEK----GLITWNAMISGYAQNGLAGHVLDLYRKME 252
Query: 221 LFGMMPKKNVASWV---------------------------------SLIDGFMRKGDLK 247
G++P V +LI+ + R G+L
Sbjct: 253 FTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLV 312
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
KA +F+ M EK V+SWTA+I G+ +G+ E A+ +F +M+ + + VS LSAC+
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGE-TKEKDLLT 364
G E G+ + D+GL+ + +VD+ + G +E A + G + E D
Sbjct: 373 HAGLTEKGLYYFTAME-RDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431
Query: 365 WTAMIWGLAIHGRYEQAIQYFKK 387
W A++ IH E A F+K
Sbjct: 432 WGALLGACKIHRNVELAELAFEK 454
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 10/214 (4%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW A + ++ ++AL ++ QML +G N FT A +CA + AG ++H ++
Sbjct: 23 SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQ 380
+ + T+L+ MY KC I +A VF E L + A+I G +++ R+
Sbjct: 83 IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN---FFDSMRFDYFIEPSVKHHT 437
A+ F++M G + L ++ C +G + L S+RF + SV +
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDLSVGN-- 198
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ + R G VD A + MPE + W A+
Sbjct: 199 CLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAM 231
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 113/284 (39%), Gaps = 35/284 (12%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S+D+A +FD K L +N +I G A+N + + M + P+ +T V
Sbjct: 209 SVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLS 268
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
S A L + GR + I SG ++ F++ L +MY + G A +FD EKN
Sbjct: 269 SCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKN--- 325
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
V+ W +I G G AV+LF M + L DG
Sbjct: 326 -VISWTAIIAGYGMHGQGELAVQLFDEMISSD-----ELPDG------------------ 361
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGV 316
++ ++++ S G EK L F M D G++ + + G LE
Sbjct: 362 ----AAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEAR 417
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
++ +S GA+ AL+ N+E A L F + K K
Sbjct: 418 KLIGSMSVEP---DGAVWGALLGACKIHRNVELAELAFEKRKLK 458
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/532 (29%), Positives = 269/532 (50%), Gaps = 71/532 (13%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYA 82
P+ +++ IS + S S L+QIHAQI L +L++ + + +++YA
Sbjct: 31 PTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYA 90
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+F + L I+N++I+ A+ +++ + F + + P+ TYPFV K++ L
Sbjct: 91 EKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYL 150
Query: 143 SLLSLGRGLHCLIVKSGVEYDA---------FVRVHLADM-------------------- 173
+S L L+ K+G+E+D + ++ L D+
Sbjct: 151 GEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMI 210
Query: 174 --YVQLGKTRGAFKVFDETPEK-----------------------------------NKS 196
YV+ + A VF E+ N
Sbjct: 211 SGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVK 270
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+ ++ N L++ K G L A +F MP KNV W +++ G+ G+L++A ELFE
Sbjct: 271 FTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGS 330
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + VV WTAMING+ Q ++A+A+F +M V+ + F VVS L+ CA+ GA+E G
Sbjct: 331 PIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGK 390
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+H +I N + +GTAL++MYAKCG IE A +F + KD +WT++I GLA++G
Sbjct: 391 WIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNG 450
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ +A++ F KM +G PD F+ +L+AC + G V+ FF+SMR +Y I+P V+H+
Sbjct: 451 KTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHY 510
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFV---IWGALFCACRTHKDTKIAK 485
+V+LL R G +++A I K+P+ + ++G+L ACR + + ++ +
Sbjct: 511 GCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGE 562
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 8/218 (3%)
Query: 1 MKGHV-FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G+V FNR A+A ++ + +++ + + +Q + IH I + +
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI 401
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T LI + I+ AL IF K+ + +I GLA N + F
Sbjct: 402 PIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSK 461
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYV 175
M + VRP+ +T+ V + + L+ GR +EY +V L D+
Sbjct: 462 MKQAGVRPDDITFIGVLSACSHGGLVEEGRK---FFNSMRMEYQIKPKVEHYGCLVDLLG 518
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ G A ++ + P++NK+ +V L+ L++ C G
Sbjct: 519 RAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYG 556
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/515 (31%), Positives = 256/515 (49%), Gaps = 86/515 (16%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E ++ ++ + ++L+Q H QI +H L S + +LI+ +S +DYA
Sbjct: 2 EQKMLRILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLITVSSAFNLLDYA-------- 53
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+H + + + M L V N T+ F+ K + L GR
Sbjct: 54 -----------------TH-KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRV 95
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG-AFKVFDETP------------------ 191
+H I+K G FV+ L Y + G A++VF+E P
Sbjct: 96 IHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRG 155
Query: 192 ---------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
+K +++ WN ++ G SK G + A +F MP +N SW S+I G++R
Sbjct: 156 EIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVR 215
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG--------------------------- 275
GD++ A +F QMPEK VVSWTAMI+G++ NG
Sbjct: 216 IGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGY 275
Query: 276 ----EAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
E ++AL +F ML G R + T++S LSACA +G+LE G +++YI N L
Sbjct: 276 VHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLS 335
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+G AL+DM+AKCG++E A VF ++ ++TWT M+ GLA++G+ +AI F KM
Sbjct: 336 IPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCL 395
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
GT+PD +F+A+L+AC + G V+ FD M ++ I+P ++H+ +V+LL R G+++
Sbjct: 396 EGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLE 455
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A+ F +M P+ VIW L C+ H + + K
Sbjct: 456 EAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLK 490
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/525 (31%), Positives = 265/525 (50%), Gaps = 76/525 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPK 92
ISL+ S QL+QIH+ I L + ++I+ H+S + YA +FD
Sbjct: 11 ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQP 70
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
L I+N +I+G + +H Q+ +S ++ ML +++P+R T+PF+ K L G+ L
Sbjct: 71 TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
VK G + + FV+ M+ A KVFD + V+ WN++++G +++
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFD----MGDAWEVVTWNIMLSGYNRV 186
Query: 213 GYLRKAVELFGMMPKKNVA--------------------------SWVS----------- 235
+K+ LF M K+ V+ +++
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246
Query: 236 --LIDGFMRKGDLKKAGELFE-------------------------------QMPEKGVV 262
LID F G++ +A +F+ Q+PE+ V
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWTAMI+G+ + +ALA+F +M + V+ ++FT+VS L+ACA +GALE G V YI
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
N +G AL+DMY KCGN+ A VF E KD TWTAMI GLAI+G E+A+
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F M+ + PD ++ +L AC ++G V+ +FF SM + I+P+V H+ +V+L
Sbjct: 427 AMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL 486
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G++++A I MP P+ ++WG+L ACR HK+ ++A++A
Sbjct: 487 LGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMA 531
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/494 (33%), Positives = 248/494 (50%), Gaps = 53/494 (10%)
Query: 20 KSSHKPSNNITET-HIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLI---- 70
K N I T I++I S KQL Q+HA I L L SS + T ++
Sbjct: 3 KEDGSDGNTIVNTSEAITVIRQCKSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFT 62
Query: 71 --------SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
S + YALS+F+ + +N +IR S + + FV M R
Sbjct: 63 ALLPTTNASPTTPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRR 122
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
LSV P+ T+PF K+ + L LSL + LH K G D FV
Sbjct: 123 LSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFV---------------- 166
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
N LI+ S +L A ++F K+V S+ +LI GF++
Sbjct: 167 -------------------CNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIK 207
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-AEKALAMFFQMLDAGVRANDFTVVS 301
GD +A LF++MP + VSW ++ G++Q+G+ A+ +F +ML + VR ++ +VS
Sbjct: 208 VGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVS 267
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
ALSACA++G LE G +H YI N + + T LVD+YAKCG IE A +F + +K+
Sbjct: 268 ALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKN 327
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
L TW A++ GL +HGR ++ YF +M+ +G +PDG FL IL C ++G V A NFF
Sbjct: 328 LFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQ 387
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
M Y + +KH+ + +LL R G + +A+ I +MP D +WG + CR H +
Sbjct: 388 EMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNV 447
Query: 482 KIAKIALQSSCSLN 495
+IA+ A ++ +LN
Sbjct: 448 EIAEKAAENVMALN 461
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 248/461 (53%), Gaps = 42/461 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I + N K +Q HAQI+LH L ++ + ++++ + +D A+ +FD +
Sbjct: 83 IFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPS 142
Query: 94 LHIFNVLIRGLAENSHFQSC---ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++N +IR + + + M L + + T PFV KS A LS + +GR
Sbjct: 143 SLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRC 202
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H ++ G+E D +V L DMYV+ C
Sbjct: 203 VHGQGLRVGLEGDFYVGASLIDMYVK--------------------------------CG 230
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
IG RK LF M +++ASW +LI G+M++G++ A +LFE+M + +VSWTAMI+G
Sbjct: 231 VIGDARK---LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 287
Query: 271 FSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
++QNG AE+AL +F +ML G ++ N T+VS L ACA+ ALE G R+H++ +
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFK 386
L ++ TAL MYAKC ++ A F + K+L+ W MI A HG +A+ F+
Sbjct: 348 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M+ +G +PD F+ +L+ C +SG + LN F+ M + +EP V+H+ VV+LL R
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 467
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
G++ +A I++MP +WGAL ACR+H++ +IA++A
Sbjct: 468 GRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELA 508
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/514 (32%), Positives = 268/514 (52%), Gaps = 59/514 (11%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T +++LI + + +QL+QIHA+ I+ +L + I T++I+S H +DYA +F+
Sbjct: 5 TPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQT 64
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVF-MLRL--SVRPNRLTYPFVSKSVASLSLLS 146
+ I+N +IR A +S C++ ++ +R ++ ++ TYPFV K+ AS +
Sbjct: 65 QEPDGFIYNAMIR--AYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVE 122
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H +IV+ G E D F++ L + Y+ G+ A +VFDE K+ V+ WN LI
Sbjct: 123 KGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKD----VVFWNALI 178
Query: 207 NGCSK-------IGYLRKAVELFGMMP--------------------------------- 226
G ++ G ++ VE+ + P
Sbjct: 179 TGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMV 238
Query: 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
++ V +LI+ +++ G L A +LF+++PEK V W ++I G+ Q G + + +
Sbjct: 239 LREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLR 298
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA----IGTALVDMY 341
+M + ++ + FTV LSACA++GA G VH + KG IGTAL+DMY
Sbjct: 299 EMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAE-----KKGIWDVFIGTALIDMY 353
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG I AA VF + E+++ TW A++ G A HG+ E AI+ F +M SG PD FL
Sbjct: 354 AKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFL 413
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
A+L AC +SG V+ +FD M Y I P V+H+ +V+LL R G + +A I M
Sbjct: 414 AVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVV 473
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
P+ V+WGAL AC H + +I + A LN
Sbjct: 474 EPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 265/487 (54%), Gaps = 18/487 (3%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL----FASSR 64
L+ + TT + S K + H ISL+ + + K L Q+H +I +L +A R
Sbjct: 10 LSPVPSKTTALNSQQKQHLRKPD-HAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGR 68
Query: 65 ITTQLISSASLHK--SIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ L+S AS S++YA +FD P+N ++ +I+ A + + + + ML
Sbjct: 69 L---LLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRML 125
Query: 122 --RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+ V PN T+ +V + + + + G+ H ++K E+ L D Y ++G+
Sbjct: 126 CDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGE 185
Query: 180 TRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
+ VFD K + V+ WN LING K G L +A LF MP+++V SW ++
Sbjct: 186 VGIVVRRVFD----KIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLV 241
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ G L +A LF++MP++ +VSW+A+I G+ Q G KAL +F +M A V+ ++
Sbjct: 242 GYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVI 301
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
V + LSACA++GAL+ G +H YI + + + TAL+DMY+KCG I+ A VF ET
Sbjct: 302 VTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETG 361
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+K + W++MI GLA+H E+AI+ F KM+ G EP ++ IL AC +SG V + L
Sbjct: 362 DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQ 421
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F+ M + +P ++H+ +V+LL R G + A + MP D IW AL AC+ H
Sbjct: 422 IFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLH 481
Query: 479 KDTKIAK 485
++ ++ +
Sbjct: 482 RNVELGE 488
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/497 (30%), Positives = 254/497 (51%), Gaps = 40/497 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+ H SL+ + ++ K+L+QIH QII++ + + +L+S ++ A +F+
Sbjct: 18 QQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIE 77
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+ ++N +IRG +++ + + M+ PN TY F+ A LL G
Sbjct: 78 NPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQ 137
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H +V +G + FVR L ++Y G G
Sbjct: 138 VHGRVVANGYCTNVFVRTSLVNLYAIAGGYDG---------------------------- 169
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+RKA +F + +N+ SW SL+ G++R GD+ A +F++MPE+ VVSWT MI G
Sbjct: 170 ----VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAG 225
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS----CND 326
+Q G ++AL +F +M AGV+ + +V+ALSACA++G L+ G +H+YI +
Sbjct: 226 CAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGN 285
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
L ++ +L+ MYA CG I+ A VF +++ ++WT+MI G A G E+A+ F+
Sbjct: 286 QPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQ 345
Query: 387 KMMYSGTE---PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
M GT+ PDG F+ +L AC ++G V +FF+ M + I P ++H+ +V+LL
Sbjct: 346 WMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLL 405
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503
SR G +D+A I MP P+ +WGAL CR HK+ ++A Q +L L QA
Sbjct: 406 SRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQ-KLALELKPDQAAG 464
Query: 504 YCQTFMQQKGDGRTWRE 520
Y + W++
Sbjct: 465 YLVLLSNVYATAKRWQD 481
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 253/505 (50%), Gaps = 40/505 (7%)
Query: 1 MKGHVFNRLTTAIAP----TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIIL 56
++ V N L T P +++ +P N T +++ + S K+ ++HA ++
Sbjct: 61 IRKQVENGLITRDPPLLYYMQGLRAGLRP-NGHTFMYLLKALVSGQEVKEGEEVHASVVR 119
Query: 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
S ++ L+ + +FD L ++ ++IR + + +
Sbjct: 120 TGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALEL 179
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
F M + + P+ + V + L L + + +HC I KSG+E DAFV L Y +
Sbjct: 180 FRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGE 239
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
G A++ F ET P KN+ W ++
Sbjct: 240 CGSLDYAYRFFQET-----------------------------------PMKNIVVWNTM 264
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I + +L+ +LF+ MP++ VVSW +MI GF++ G+ ++AL F +M +GV N
Sbjct: 265 IHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNA 324
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T++S LSACA GAL+ G +H Y+ ND G++ ++L+DMY+KCG+I+ A +F E
Sbjct: 325 LTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE 384
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+ +DL TWT+++ GLA+HGR E+A+ YF KM + +PD + +L+AC ++G +
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+F SM + + P V+H+ +V+LL R+G + +A + I MP + +IWGA ACR
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 477 THKDTKIAKIALQSSCSLNLSIPQA 501
H + ++ ++A + L+ P A
Sbjct: 505 VHNNVELGEVAARRLLGLDPRDPWA 529
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 14/237 (5%)
Query: 261 VVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
V W MI +NG + L + Q L AG+R N T + L A ++ G V
Sbjct: 54 VFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEV 113
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + F + AL+ Y CG + VF E ++ L+ WT +I
Sbjct: 114 HASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFP 173
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ--VKLALNFF---DSMRFDYFIEPSV 433
E+A++ F+ M G PD +++AC G V A++ F + D F+
Sbjct: 174 EKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVS--- 230
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+ +++ G +D A F + P + V+W + H + ++ K QS
Sbjct: 231 ---STLISTYGECGSLDYAYRFFQETP-MKNIVVWNTMIHQSVEHNNLELGKQLFQS 283
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 182/568 (32%), Positives = 281/568 (49%), Gaps = 89/568 (15%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFAS-------SRITTQLISSASLHKS-----IDY 81
I+S H S +L Q+HA ++ L +S SR+ L S S
Sbjct: 12 ILSTRHPP-SAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRPLLHAL 70
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLA---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
AL P + +N +R L+ + C+ + +LR S RP+ LT+PF+ K+
Sbjct: 71 ALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLR-SARPDHLTFPFLLKA 129
Query: 139 VASL-----------SLLSLGRGLHCLIVKSGVEYDA-----------FVRVHLADM--- 173
A L ++LSLG +V + + + A F H+ D+
Sbjct: 130 CARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSW 189
Query: 174 ------YVQLGKTRGAFKVF-------DETPEK--------------------------- 193
YV+ G R A ++F TP++
Sbjct: 190 NTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVE 249
Query: 194 --NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
+V L NV+++ K G L +A +F + KK + SW ++I G+ + G + A +
Sbjct: 250 SHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARK 309
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+F++MPE+ V W A++ G+ Q ++AL +F M +A V +D T+V+ LSAC+++GA
Sbjct: 310 VFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGA 369
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G+ VH+YI L +GT LVDMY+KCGNIE A VF E EK+ LTWTAMI G
Sbjct: 370 LEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISG 429
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA HG + AI+YF++M+ G +PD F+ +L+AC ++G VK FF M Y +E
Sbjct: 430 LANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLER 489
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
+KH++ +V+LL R G +D+A + +N MP PD V+WGALF ACR H + + + A
Sbjct: 490 KMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKL 549
Query: 492 CSLN-----LSIPQAMSYCQTFMQQKGD 514
L+ + + A Y + M++K D
Sbjct: 550 VELDPGDSGIYVLLANMYAEANMRKKAD 577
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 268/541 (49%), Gaps = 84/541 (15%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLF-----ASSRITTQLISSASLHKSIDY 81
N + T+I+ I +T QL+QIHA ++ + F AS +T ISS S + Y
Sbjct: 68 NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCS---CLIY 124
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVA 140
A ++F+ NL+ +N LIRG A +S F+ ML S PN+ T+PF+ K+ +
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L +L LG LH +++K+ + D F+ L + Y G A +VF P K+ V+
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKD----VV 240
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV---- 234
WN +IN + G KA+ LF M K+V W+
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI 300
Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING----------- 270
+++D +++ G + A +LF +M EK +VSWT M++G
Sbjct: 301 ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAH 360
Query: 271 --------------------FSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKV 309
+ QNG+ AL++F +M L + ++ T++ AL A A++
Sbjct: 361 CIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQL 420
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GA++ G +H YI +D L + T+L+DMYAKCGN+ A VF + KD+ W+AMI
Sbjct: 421 GAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMI 480
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
LA++G+ + A+ F M+ + +P+ F IL AC ++G V F+ M Y I
Sbjct: 481 GALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGI 540
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++H+ VV++ R G ++KA +FI KMP P +WGAL AC H + ++A++A Q
Sbjct: 541 VPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQ 600
Query: 490 S 490
+
Sbjct: 601 N 601
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 95/217 (43%), Gaps = 9/217 (4%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
IH I H++ + + T L+ + +++ A+ +F K++++++ +I LA
Sbjct: 429 IHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQ 488
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRV 168
++ + F ML ++PN +T+ + + L++ G L + G+ V
Sbjct: 489 GKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYV 548
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA----VELFGM 224
+ D++ + G A ++ P + +W L+ CS+ G + A L +
Sbjct: 549 CVVDIFGRAGLLEKAASFIEKMP---IPPTAAVWGALLGACSRHGNVELAELAYQNLLEL 605
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
P N ++V L + + + GD +K L + M + V
Sbjct: 606 EP-CNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDV 641
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 237/473 (50%), Gaps = 68/473 (14%)
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
YA+S+F N I+N ++RG A +S S + +V M+ L + PN T+PF+ KS A
Sbjct: 18 YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
G+ +H ++K G E D +V L MY Q G+ A KVFD + ++
Sbjct: 78 KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-- 231
+ V+ WN +I+G ++ G ++A+ELF M K NV
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197
Query: 232 ------------------------SWV-------------SLIDGFMRKGDLKKAGELFE 254
SW+ +LID + + G ++ A LFE
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+ K VVSW +I G++ ++AL +F +ML +G ND T+VS L ACA +GA++
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317
Query: 315 GVRVHNYIS--CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G +H YI D ++ T+L+DMYAKCG+IEAA VF K L +W AMI+G
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A+HGR F +M +G EPD F+ +L+AC +SG++ L + F SM DY I P
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++H+ +++LL G +A I MP PD VIW +L ACR H + ++A+
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/427 (24%), Positives = 183/427 (42%), Gaps = 82/427 (19%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + +I A +FD K++ +N +I G AE ++ + F M++ +VR
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGL 255
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F+ K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 256 FEGLSCKD----VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F M K + SW
Sbjct: 312 LGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 371
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A +F +M G+ +D T V LSAC+ G L+ G + ++
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMT-Q 430
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
D+ + T ++ Y MI L G +++A +
Sbjct: 431 DYDI-----TPKLEHYG------------------------CMIDLLGHSGLFKEAKEMI 461
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444
K M EPDG ++ ++L AC G ++LA +F ++ +EP + + ++ N+ +
Sbjct: 462 KTM---PMEPDGVIWCSLLKACRRHGNLELAESFARNL---MKVEPENPGSYVLLSNIYA 515
Query: 445 RVGQVDK 451
G+ D+
Sbjct: 516 TAGEWDE 522
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 161/478 (33%), Positives = 255/478 (53%), Gaps = 40/478 (8%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS-SASLHKSID 80
S+ P + + H ++ H QI+ II L + +T+ ++ AS +I+
Sbjct: 26 SNHPCLTMLQNHCTTINH-------FHQIYPHIIKTGLTLNPIASTRALTFCASPSGNIN 78
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
YA +F NL+ +N +IR + +S Q IS FV ML ++P LTYP V K+ A
Sbjct: 79 YAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYA 138
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L G LH +VK G++ D F+ + MY G A +VFD
Sbjct: 139 QLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFD------------ 186
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
K +EL+ +V + S+I G+ + G++ ++ LF+ M +
Sbjct: 187 ---------------GKKLELY----DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRT 227
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VSW +MI+G+ +NG+ +AL +F +M G ++FT+VS L+ACA +GAL+ G VH+
Sbjct: 228 SVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHD 287
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI N F L + TA++DMY KCG++E A VF + L W ++I GLA++G +
Sbjct: 288 YIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHERE 347
Query: 381 AIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
A ++F K+ S +PD F+ +LTAC + G + A ++F+ M Y IEPS+KH+T +
Sbjct: 348 AFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCI 407
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
V++L + G +++A I MP PD +IWG+L +CR H++ +IA+ A Q LN S
Sbjct: 408 VDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPS 465
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 249/462 (53%), Gaps = 40/462 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDH 88
E+ I++ + + Q++Q+HA+I+L+ L S + +LI + + L+ +D Y LSIF+
Sbjct: 46 ESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N ++N LIRG + + M + V P T+ + K+ + + LG
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165
Query: 149 RGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
R +H I+ G D V + DMY+
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYI-------------------------------- 193
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
K G+L ++F MP ++V SW LI +++ G+++ AGELF+ +P K +V+WT M
Sbjct: 194 ---KCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVM 250
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
++GF+QN + +A+ F +M + GV ++ T++ +SACA++GA + + + ++F
Sbjct: 251 VSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEF 310
Query: 328 GLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
G K ++ G+AL+DMY+KCG++ A VF KE+++ ++++MI G A+HGR A++ F
Sbjct: 311 GGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLF 370
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+ + +P+ F+ +LTAC ++G V+ F+ M Y I+PS H+T +V+LL R
Sbjct: 371 DEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGR 430
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
G++ +A + MP P +WGAL ACR HK IA IA
Sbjct: 431 AGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIA 472
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 236/455 (51%), Gaps = 46/455 (10%)
Query: 38 IHSSNSTKQLRQIHAQIIL-----HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+ + S + +QI A I H+ FAS ++ ISS ID++ IF
Sbjct: 12 LKNCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWG---DIDHSYRIFLQIPSP 68
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+ +N +IRG ++ + +S FV MLR V P+ LTYPFV+K+VA LS L L +H
Sbjct: 69 TISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVH 128
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C I K G+ +D F+ L MY G A KVFDE
Sbjct: 129 CRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDE----------------------- 165
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
M +N SW +++DG+ + GDL A ++F MP++ VVSW++MI+G
Sbjct: 166 ------------MLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCV 213
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+ GE ALA+F +M G +AN T+VS L ACA +GALE G +H Y+ N
Sbjct: 214 KGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLV 273
Query: 333 IGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ T+L+DMYAKCG IE A VF + D+L W +I GLA HG ++++ FK+M
Sbjct: 274 LRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQV 333
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G PD +L + +AC + G V A +FF S+ + P +H+ +V++LSR GQ+
Sbjct: 334 LGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLA 392
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A +FI +MP P + GAL C H+ +A+
Sbjct: 393 EAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAE 427
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 248/487 (50%), Gaps = 44/487 (9%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S Q +Q H ++ L + + L+ S+ + YA +F N+ ++N LIR
Sbjct: 15 SLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVE 161
G+ N F+ +S + M + P+ T+PFV K+ L +G LH L++K+G +
Sbjct: 75 GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------- 208
+D FV+ L +Y + G A KVFDE PEKN V+ W +I G
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKN----VVSWTAIICGYIESGCFGEALGL 190
Query: 209 ----------------------CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMR 242
CS++G L + G M + NV SL+D + +
Sbjct: 191 FRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAK 250
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G +++A +F+ M EK VV W+A+I G++ NG ++AL +FF+M VR + + +V
Sbjct: 251 CGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGV 310
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
SAC+++GALE G + ++F +GTAL+D YAKCG++ A VF + KD
Sbjct: 311 FSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDC 370
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+ + A+I GLA+ G A F +M+ G +PDG F+ +L C ++G V +F
Sbjct: 371 VVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSG 430
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M + + P+++H+ +V+L +R G + +A + I MP + ++WGAL CR HKDT+
Sbjct: 431 MSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQ 490
Query: 483 IAKIALQ 489
+A+ L+
Sbjct: 491 LAEHVLK 497
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 46/371 (12%)
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L L + HCL+++ G+ D ++ L + T+ A VF +TP N +
Sbjct: 12 GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPN----IF 67
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------------- 231
L+N LI G R AV ++ M + A
Sbjct: 68 LYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSL 127
Query: 232 ------SW-----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
W L+ + + G L A ++F+++PEK VVSWTA+I G+ ++G +A
Sbjct: 128 VIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEA 187
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L +F +L+ G+R + FT+V L AC++VG L +G + Y+ + + T+LVDM
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDM 247
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG++E A VF EKD++ W+A+I G A +G ++A+ F +M PD
Sbjct: 248 YAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAM 307
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ + +AC G ++L M D F+ V T +++ ++ G V +A M
Sbjct: 308 VGVFSACSRLGALELGNWARGLMDGDEFLSNPVL-GTALIDFYAKCGSVAQAKEVFKGM- 365
Query: 461 ETPDFVIWGAL 471
D V++ A+
Sbjct: 366 RRKDCVVFNAV 376
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 157/515 (30%), Positives = 260/515 (50%), Gaps = 44/515 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP +T H++S +S++ + IH I+ + ++ + L++ SI A
Sbjct: 483 KPGR-VTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQ 541
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
++F+ +++ +N +I G A++ +++ F+ M + + P+++T+ V +
Sbjct: 542 NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPE 601
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LGR +H LI++SG++ D + L +MY++ G + A++VF +N V+ W
Sbjct: 602 ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRN----VMSWT 657
Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
+I G + G RKA ELF G P K+ S +
Sbjct: 658 AMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNS 717
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+LI + + G + A ++F++MP + ++SW MI G++QNG AL
Sbjct: 718 GYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFA 777
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+QM + GV N F+ VS L+AC+ ALE G RVH I +G AL+ MYAKC
Sbjct: 778 YQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKC 837
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++E A VF EK+++TW AMI A HG +A+ +F M G +PDG+ F +IL
Sbjct: 838 GSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSIL 897
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC +SG V F S+ + + P+++H+ +V LL R G+ +A IN+MP PD
Sbjct: 898 SACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPD 957
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
+W L ACR H + +A+ A ++ LN P
Sbjct: 958 AAVWETLLGACRIHGNVALAEHAANNALKLNARNP 992
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 198/422 (46%), Gaps = 44/422 (10%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS IT I++ S + ++IH++II R+ L++ + + A
Sbjct: 181 PSK-ITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQ 239
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F +++ +N ++ A+ ++ + CI F M + P+++TY + + + S+
Sbjct: 240 VFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G+ +H L V G+ D V LA M+V+ G GA + + +++ V+++N
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD----VVVYNA 355
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV---------------------------------- 230
LI ++ G+ +A E + M V
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415
Query: 231 -ASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+S V SLI + R GDL +A ELF MP++ ++SW A+I G+++ + +A+ ++
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QM GV+ T + LSAC A G +H I + G + AL++MY +CG
Sbjct: 476 QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG 535
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I A VF T+ +D+++W +MI G A HG YE A + F +M G EPD F ++L
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595
Query: 406 AC 407
C
Sbjct: 596 GC 597
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/491 (23%), Positives = 217/491 (44%), Gaps = 53/491 (10%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P + +T +++ + + + ++IH + L + R+ T L + + A
Sbjct: 281 PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+ F +++ ++N LI LA++ H++ + M V NR TY V + ++
Sbjct: 341 ALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA 400
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G +H I + G D + L MY + G A ++F+ P+++ ++ WN
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRD----LISWNA 456
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV------------------------------ 234
+I G ++ +A++L+ M + V
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L++ + R G + +A +FE + ++SW +MI G +Q+G E A +F
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M G+ + T S L C ALE G ++H I + L +G AL++MY +CG
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCG 636
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+++ A VF + +++++WTAMI G A G +A + F +M G +P + F +IL
Sbjct: 637 SLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILK 696
Query: 406 ACWYSGQV----KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
AC S + K+ + +S Y ++ V + +++ S+ G + A +KMP
Sbjct: 697 ACMSSACLDEGKKVIAHILNS---GYELDTGVGN--ALISAYSKSGSMTDARKVFDKMPN 751
Query: 462 TPDFVIWGALF 472
D + W +
Sbjct: 752 R-DIMSWNKMI 761
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/485 (23%), Positives = 214/485 (44%), Gaps = 53/485 (10%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S + ++IHAQ++ + ++ LI+ +S+ A +F +++ +N LI
Sbjct: 97 SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
A+ + F M P+++TY + + S + L G+ +H I+++G +
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQR 216
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D V+ L +MY + A +VF ++ V+ +N ++ ++ Y+ + + LF
Sbjct: 217 DPRVQNSLLNMYGKCEDLPSARQVFSGIYRRD----VVSYNTMLGLYAQKAYVEECIGLF 272
Query: 223 GMMPKKNV----ASWVSLIDGF-----------------------------------MRK 243
G M + + ++++L+D F +R
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
GD+ A + E ++ VV + A+I +Q+G E+A ++QM GV N T +S L
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
+AC+ AL AG +H++IS IG +L+ MYA+CG++ A +F ++DL+
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLI 452
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W A+I G A +A++ +K+M G +P FL +L+AC S M
Sbjct: 453 SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG-----KM 507
Query: 424 RFDYFIEPSVKHH----TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
+ + +K + ++N+ R G + +A N D + W ++ H
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT-RARDIISWNSMIAGHAQHG 566
Query: 480 DTKIA 484
+ A
Sbjct: 567 SYEAA 571
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 20/285 (7%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
L+ C++ L +A + M + V + LI+ +++ + A ++F +MP +
Sbjct: 88 LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
V+SW ++I+ ++Q G +KA +F +M AG + T +S L+AC LE G ++H+
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I + + +L++MY KC ++ +A VF +D++++ M+ A E+
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV-------KLALNFFDSMRFDYFIEPSV 433
I F +M G PD ++ +L A + KLA+N + + D +
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVN--EGLNSD------I 319
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ T + + R G V A + + D V++ AL A H
Sbjct: 320 RVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQH 363
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 239/480 (49%), Gaps = 56/480 (11%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
IS +H +S Q++QIHAQ++ NL S + +LI++ SL + + A+++F+ ++
Sbjct: 21 ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++N LIR NS S F M V + TYPF+ K+ + + + +H
Sbjct: 81 LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+ K G D FV L D Y K+G
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYF-----------------------------------KLGE 165
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
L +A LF MP+++ SW +++DG+++ G++ A ELFE+MP + VVSW+ M
Sbjct: 166 LGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM------- 218
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
+AG++ +D TV+S LSACA G L G RVH I F +
Sbjct: 219 --------------EAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS 264
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
AL+DMYAKCG++E A +F KD+++W A+I GLA+HG E+A+Q F +M G
Sbjct: 265 NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV 324
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
PD F+ +L AC ++G V L++F +M DY + P V+H+ +V+LL R G++ +A
Sbjct: 325 PDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFR 384
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
++ MP P+ +IWG L ACR H T +A+ LS +S GD
Sbjct: 385 LVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGD 444
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 130/344 (37%), Gaps = 35/344 (10%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
++N T ++ + + IHAQ+ + LI S + A +
Sbjct: 113 ADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRL 172
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM----------LRLSVRPNRLTYPFV 135
FD ++ +N ++ G + + F M + ++ + T +
Sbjct: 173 FDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISI 232
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A LL LG+ +H I ++ + V L DMY + G A +F K+
Sbjct: 233 LSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKD- 291
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKA 249
V+ WN +I G + G+ KA++LF G +P K ++V ++ G + +
Sbjct: 292 ---VVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDK--VTFVGVLCACTHAGFVDEG 346
Query: 250 GELFEQM-------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
F M PE V + M++ + G ++A + M + N +
Sbjct: 347 LHYFHAMERDYGVPPE--VEHYGCMVDLLGRGGRLKEAFRLVHSM---PLEPNAIIWGTL 401
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
L AC A V + + ++ G + + L ++YA G+
Sbjct: 402 LGACRMHSATGLAEEVFDRLVKSELSDSGNL-SMLSNIYAAAGD 444
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 244/481 (50%), Gaps = 77/481 (16%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ YA+S+F+ N I+N++ RG A +S S + +V M+ L + PN T+PF+ KS
Sbjct: 25 LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---- 194
A G+ +H ++K G + D +V L MY Q G+ A KVFD + ++
Sbjct: 85 CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144
Query: 195 -----------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
+ V+ WN +I+G ++ G +KA+ELF M K NV
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204
Query: 232 --------------------------SWV-------------SLIDGFMRKGDLKKAGEL 252
SW+ +LID + + G+++ A EL
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E + K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +GA+
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324
Query: 313 EAGVRVHNYISCNDFGLKG-------AIGTALVDMYAKCGNIEAASLVFGETK-EKDLLT 364
+ G +H YI D LKG ++ T+L+DMYAKCG+I+AA V + + L T
Sbjct: 325 DIGRWIHVYI---DKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W AMI+G A+HGR A F +M +G EPD F+ +L+AC +SG + L N F SMR
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
DY I P ++H+ +++LL G +A IN MP PD VIW +L AC+ H + ++
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELG 501
Query: 485 K 485
+
Sbjct: 502 E 502
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 163/382 (42%), Gaps = 52/382 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + I+ A +FD K++ +N +I G AE +++ + F M++ +V+
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
+ K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 265 LEGLSNKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320
Query: 229 ----NVASWV---------------------SLIDGFMRKGDLKKAGELFEQMP-EKGVV 262
++ W+ SLID + + GD+ A ++ + + +
Sbjct: 321 LGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLS 380
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+W AMI GF+ +G A A +F +M G+ +D T V LSAC+ G L+ G + +
Sbjct: 381 TWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 440
Query: 323 SCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
D+ + + ++D+ G EA ++ E D + W +++ IHG E
Sbjct: 441 R-QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 499
Query: 380 QAIQYFKKMMYSGTEPDGTVFL 401
+ KK++ E G+ L
Sbjct: 500 LGESFAKKLIKIEPENPGSYVL 521
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 20/310 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ KP + T ++S S S + RQ+H+ I H ++ +I LI S
Sbjct: 199 MKTNVKPDESTMAT-VVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGE 257
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A + + + K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 258 VETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 317
Query: 139 VASLSLLSLGRGLHCLIVKS----GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
A L + +GR +H I K V + +R L DMY + G A +V D + N
Sbjct: 318 CAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSA-FN 376
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAG 250
+S S WN +I G + G A ++F M K + ++V L+ G L
Sbjct: 377 RSLST--WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 434
Query: 251 ELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+F M + ++ + MI+ +G ++A M M + + S L A
Sbjct: 435 NIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKA 491
Query: 306 CAKVGALEAG 315
C G LE G
Sbjct: 492 CKIHGNLELG 501
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 252/505 (49%), Gaps = 40/505 (7%)
Query: 1 MKGHVFNRLTTAIAP----TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIIL 56
++ V N L T P +++ +P N T +++ + S K+ ++HA ++
Sbjct: 61 IRKQVENGLITRDPPLLYYMQGLRAGLRP-NGHTFMYLLKALVSGQEVKEGEEVHASVVR 119
Query: 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
S ++ L+ + +FD L ++ ++IR + + +
Sbjct: 120 TGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALEL 179
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
F M + + P+ + V + L L + + +HC I KSG+E DAFV L Y +
Sbjct: 180 FRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGE 239
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
G A++ F ET P KN+ W ++
Sbjct: 240 CGSLDYAYRFFQET-----------------------------------PMKNIVVWNTM 264
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I + +L+ +LF+ MP++ VVSW +MI GF++ G+ ++AL F +M +GV N
Sbjct: 265 IHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNA 324
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T++S LSACA GAL+ G +H Y+ ND G++ ++L+DMY+KCG+I+ A +F E
Sbjct: 325 LTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE 384
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+ +DL TWT+++ GLA+HGR E+A+ YF KM + +PD + +L+AC ++G +
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+F SM + + P V+H+ +V+LL R+G + +A + I MP + +IWGA ACR
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 477 THKDTKIAKIALQSSCSLNLSIPQA 501
H + ++ ++A + L P A
Sbjct: 505 VHNNVELGEVAARRLLGLXPRDPWA 529
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 14/237 (5%)
Query: 261 VVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
V W MI +NG + L + Q L AG+R N T + L A ++ G V
Sbjct: 54 VFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEV 113
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + F + AL+ Y CG + VF E ++ L+ WT +I
Sbjct: 114 HASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFP 173
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ--VKLALNFF---DSMRFDYFIEPSV 433
E+A++ F+ M G PD +++AC G V A++ F + D F+
Sbjct: 174 EKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVS--- 230
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+ +++ G +D A F + P + V+W + H + ++ K QS
Sbjct: 231 ---STLISTYGECGSLDYAYRFFQETP-MKNIVVWNTMIHQSVEHNNLELGKQLFQS 283
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/561 (29%), Positives = 275/561 (49%), Gaps = 84/561 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFT 90
+SL+ S QL+QI +Q++L L FASSR+ + S + +DY +I +
Sbjct: 10 LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIA--FCAISEWRDLDYCTNILFNTR 67
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
N +NV IRG ++ + + + + +L+ +P+ TYP + K+ A LSL+ +G
Sbjct: 68 NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 127
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+ ++ G + D FV + + V G GA K+FD++ ++ ++ WN +ING
Sbjct: 128 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD----LVSWNSMINGY 183
Query: 210 SKIGYLRKAVELF------GMMP---------------------------------KKNV 230
+ G+ +A+ + G+ P K V
Sbjct: 184 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTV 243
Query: 231 ASWVSLIDGFMRKGDLKKAG-------------------------------ELFEQMPEK 259
+L+D +M+ G+L+ A +LF++MP+K
Sbjct: 244 PLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDK 303
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VV W AMI G+ ++ALA+F +M + ++ T+VS LSAC+++GAL+ G+ +H
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+YI ++ L A+GTAL+DMYAKCG I A VF E ++ LTWTA+I GLA+HG
Sbjct: 364 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 423
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
AI YF +M+ + PD FL +L+AC + G V+ +F M + + P +KH++ +
Sbjct: 424 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 483
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
V+LL R G +++A I MP D V+WGALF ACR H + + + A ++ P
Sbjct: 484 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD---P 540
Query: 500 QAMSYCQTFMQQKGDGRTWRE 520
G+ W+E
Sbjct: 541 HDSGIYVLLANMYGEAEMWKE 561
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 254/492 (51%), Gaps = 47/492 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I+ H + L+Q + +I L + + ++ SA+ K + Y L +FD
Sbjct: 11 ILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSAT--KDLGYTLLLFDRLATPY 68
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N +IRG + +S Q + + + V P+R T+P + K+ + L + + +
Sbjct: 69 IFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYA 127
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
IVK G+++DAFV+ L + G + ++F ET +K+ V+ W LINGC + G
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKD----VVSWTALINGCLRNG 183
Query: 214 YLRKAVELFGMMPKKNV----------------------ASWV----------------- 234
+A+E F M V WV
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG 243
Query: 235 -SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+D + + G A ++F +MP + +VSW A+I G+ Q ++AL +F +M+ G+
Sbjct: 244 SALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIE 303
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N TV SAL+ACA++G+L+ G +H Y+ + GL +GTALVDMY+KCG ++ A LV
Sbjct: 304 PNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLV 363
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + KD+ WTAMI GLA+ G ++ F +M+ S +P+G FL +L+AC + G V
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F M DY +EP+V H+ +V+LL R G++++A+ FI MP P +WGALF
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483
Query: 474 ACRTHKDTKIAK 485
C HK ++ +
Sbjct: 484 GCMIHKAFELGE 495
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/419 (22%), Positives = 171/419 (40%), Gaps = 36/419 (8%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS-------RITTQLISSASLHKSID 80
+ E I+S++ ++ LR + +H + S + + L+ S D
Sbjct: 201 EVDEVTIVSVLCAA---AMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCD 257
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
A+ +F+ +NL + LI G + + ++ + F M+ + PN+ T + A
Sbjct: 258 DAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACA 317
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L L GR LH + +S + ++ + L DMY + G A VF++ P K+ V
Sbjct: 318 QLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKD----VY 373
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM 256
W +ING + G ++ LF M + V +++ ++ G + + ELF M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433
Query: 257 P-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
E V + M++ + G E+A+ M + + S C A
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM---PMEPTPGVWGALFSGCMIHKA 490
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
E G + N++ G L ++Y++C EAA+ V K K + W
Sbjct: 491 FELGEHIGNHLIKLQPHHSGRY-ILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSW- 548
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+ ++G + I + K S TE V++ + + S Q+KLA DS + I+
Sbjct: 549 IEVNGVIHEFIAFDK----SHTESI-NVYMMLESV---SAQLKLATYALDSNLLTFTID 599
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 8/196 (4%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T T ++ S Q R +H + L +S++ T L+ S +D AL +F
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVF 364
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K+++ + +I GLA S ++ F M+R V+PN +T+ V + A L+
Sbjct: 365 EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVD 424
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G L +I +E + + D+ + G+ A K + P + +W L
Sbjct: 425 EGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG---VWGAL 481
Query: 206 INGCSKIGYLRKAVEL 221
+GC + KA EL
Sbjct: 482 FSGC----MIHKAFEL 493
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 249/458 (54%), Gaps = 9/458 (1%)
Query: 43 STKQLRQIHAQIILHNLFAS--SRITTQLISS-ASLHKSIDYALSIFDHFTPKNLHIFNV 99
S + +RQIH +++ + A+ + L+S A+ + YA +FD +L + N
Sbjct: 10 SPRAVRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNA 69
Query: 100 LIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
++RG A + + M S +RP+ T+ ++ ++ A L GR +H +VK
Sbjct: 70 MVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKL 129
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G DA+VR L +M+ + G R A + DE E + V+ W+ +I G + G + A
Sbjct: 130 GFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD----VVAWSAVIAGHAARGDMAAA 185
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
++F K++ W ++ + + G+++ A ELF++ PEK VVSW +I G++ G +
Sbjct: 186 RKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLK 245
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTAL 337
AL +F +M AG ++ T+VS LS CA G L+AG +H+ + + +G AL
Sbjct: 246 HALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNAL 305
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
V MYAKCG++ A F K+ D+ TW ++I GLA HG+ EQ++++FKKM+ P+
Sbjct: 306 VSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNE 365
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
FL +L AC ++G V+ FF M+ Y IEP+ +H++ +V++L R G +D+A ++
Sbjct: 366 ISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVS 425
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
M P V+W L ACRTH + + K+ + ++N
Sbjct: 426 NMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMN 463
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 236/444 (53%), Gaps = 38/444 (8%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLI 101
++L+QIHA+++ L S T+ +S S D YA +FD F + ++N++I
Sbjct: 57 EELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
RG + + + + + ML S N T+P + K+ ++LS L +H I K G E
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
D + N LIN + G + A L
Sbjct: 177 NDVYAV-----------------------------------NSLINSYAATGNFKLAHLL 201
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F +PK + SW S+I G+ + G + A LF +M EK +SWT MI+G+ Q G ++AL
Sbjct: 202 FDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEAL 261
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F +M ++ V ++ ++ +ALSACA++GALE G +H+Y++ + +G L+DMY
Sbjct: 262 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMY 321
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG++ A VF + K + WTA+I G A HG +AI F +M G +P+ F
Sbjct: 322 AKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 381
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+LTAC Y+G V+ F +M DY ++P+++H+ VV+LLSR G +D+A FI +MP
Sbjct: 382 TVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL 441
Query: 462 TPDFVIWGALFCACRTHKDTKIAK 485
P+ VIWGAL ACR HK+ ++ +
Sbjct: 442 KPNAVIWGALLKACRIHKNIELGE 465
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 39/267 (14%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQII-------------LHNLFASS-------- 63
P N T ++ + ++ ++ QIHAQI L N +A++
Sbjct: 141 PHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHL 200
Query: 64 ---RIT-------TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113
RI +I + +D AL++F KN + +I G + +
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260
Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
+ F M V P+ ++ + A L L G+ +H + K+ + D+ + L DM
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKN 229
Y + G A +VF K SV W LI+G + G+ R+A+ F M K N
Sbjct: 321 YAKCGDMGEALEVFKNIQRK----SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQM 256
V ++ +++ G +++ +F M
Sbjct: 377 VITFTTVLTACSYTGLVEEGKLIFYNM 403
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 234/457 (51%), Gaps = 36/457 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ + +S +R +HA ++ + ++ + T L+++ + A ++
Sbjct: 49 LLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDT 108
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLH 152
++N LI G F FV M R P +TY +S + LG +H
Sbjct: 109 PVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVH 168
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+V SGV D V L DMY + A+K
Sbjct: 169 GRVVGSGVLPDLRVENALVDMYAECADMESAWK--------------------------- 201
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
LF M ++V SW SL+ G R G + +A +LF +MPE+ VSWTAMI+G+
Sbjct: 202 --------LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYV 253
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q +AL MF +M + V A++FT+VS ++ACA++GALE G V Y+S +
Sbjct: 254 QAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF 313
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+G AL+DMY+KCG+IE A VF + +D TWTA+I GLA++G E+AI+ F +M+
Sbjct: 314 VGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVS 373
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PD F+ +LTAC ++G V FF SMR Y I P+V H+ +++L R G++ +A
Sbjct: 374 ETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEA 433
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
L+ I++MP TP+ IWG L ACR H +++I ++ +
Sbjct: 434 LDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTE 470
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 284/573 (49%), Gaps = 75/573 (13%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
TN +SH I ++SL+ + S ++++IHAQ+I L + ++L++ ++
Sbjct: 43 TNWNASHVL---IQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAIS 99
Query: 77 --KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYP 133
+++DY I ++ N+ +N+ IRG E+ + + + + MLR S P+ TYP
Sbjct: 100 EWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYP 159
Query: 134 FVSKSVASLSL-----------LSLGRG---------LHCLI----------------VK 157
+ K A SL + LG +H L+ V+
Sbjct: 160 LLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVR 219
Query: 158 SGVEYDA----FVRVHLAD----MYVQLGKTRG----------------------AFKVF 187
V +++ +VR LAD +Y ++G+ K+
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH 279
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
E + +V L N L++ K + A LF M KK V SW +++ G+ + G L+
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF +MPEK VV W A+I GF Q +++ALA+F +M + V + TVV+ LSAC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
++GAL+ G+ +H+Y+ ++ + A+GTALVDMYAKCGNI+ A VF E ++ LTWTA
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTA 459
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I GLA+HG+ AI YF +M+ G PD F+ +L+AC + G V ++F M Y
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P +KH++ +V+LL R G +++A I MP PD V+WGALF R H + + + A
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L+ P GD W +
Sbjct: 580 ASKLLELD---PHDGGIYVLLANMYGDANMWEQ 609
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 114/291 (39%), Gaps = 40/291 (13%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++S + IT + +S + +H + HNL + + T
Sbjct: 368 RSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGT 427
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I A+ +F+ +N + +I GLA + + IS+F M+ + + P
Sbjct: 428 ALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T+ V + L+ GR D + Q+ G
Sbjct: 488 DEITFIGVLSACCHGGLVDQGR----------------------DYFYQMTSKYGI---- 521
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL 246
S + ++ L++ + G+L +A EL MP + + W +L G G++
Sbjct: 522 --------SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNV 573
Query: 247 ----KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+ A +L E P G + + + N + E+A + M + GV
Sbjct: 574 HMGERAASKLLELDPHDGGI-YVLLANMYGDANMWEQARKVRKMMEERGVE 623
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 232/432 (53%), Gaps = 43/432 (9%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
R + TY F+ K++++ + + R +H +VK G D FV L D Y + G A K
Sbjct: 3 RRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61
Query: 186 VFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKA 218
VFDE PE++ + + WN +++G +K G + A
Sbjct: 62 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 121
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
ELF MP++NV SW +++ G+ +KGDL+ A +F++MP K +V+WT M++ +Q G +
Sbjct: 122 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 181
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F QM +A V + VVS L+ACA+ G+L G R+H Y+ + G + AL+
Sbjct: 182 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 241
Query: 339 DMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
DM+ KCG + A VF ET +KD ++W ++I G A+HG ++A++ F +M G PD
Sbjct: 242 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 301
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ +L+AC + G V F +M DY I P ++H+ +++LL R G + +A++ I
Sbjct: 302 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 361
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA------LQSSCSLNLSI--------PQAMS 503
MP P+ VIWG+L ACR HK+ + A+IA LQ S + N ++ Q
Sbjct: 362 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 421
Query: 504 YCQTFMQQKGDG 515
+ MQ KG G
Sbjct: 422 MAKARMQMKGTG 433
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ ++S ++ A IFD KNL + +++ A+ F M SV
Sbjct: 137 STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 196
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ + + A LSLG+ +H + K + V L DM+ + G A V
Sbjct: 197 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 256
Query: 187 FD-ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
FD ET +K+ + WN +I G + G+ KA+ELF M ++
Sbjct: 257 FDTETVQKDS----VSWNSIIGGFAMHGHGDKALELFAQMKQQ 295
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 238/458 (51%), Gaps = 40/458 (8%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAE 106
+HA ++ + ++ + + L+ + A ++ D + + ++N LI G
Sbjct: 41 VHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRR 100
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ F+ FV M+R V P +TY V + + LG +H +V SGV D V
Sbjct: 101 SRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKV 160
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DMY + CS+ + A ELF M
Sbjct: 161 GNALIDMYAE--------------------------------CSE---MDAAWELFEGME 185
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+N SW S+I GF+R G + +A LF+ MPE+ VSWTAMI+G+ Q G+ +AL MF +
Sbjct: 186 VRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFRE 245
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M + VRA++FT+VS ++ACA++GALE G Y+S + + +G ALVDMY+KCG+
Sbjct: 246 MQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGS 305
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A VF E +D TWTA+I GLA++G E+AI F +M+ PD F+ +LTA
Sbjct: 306 IQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTA 365
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C ++G V +FF SM Y I P+V H +++LL R G++ +AL I MP P+
Sbjct: 366 CTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSA 425
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
IWG L ACR H +++I ++A + L L M Y
Sbjct: 426 IWGTLLAACRVHGNSEIGQLAAEH--LLELDTENGMVY 461
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 276/544 (50%), Gaps = 66/544 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-K 92
++ L +STK L+Q+H Q+++++ + L+S A K+ Y+ +F H P
Sbjct: 27 LVFLAKQCSSTKTLQQVHTQMVVNSSIHTP--NNHLLSKAIHLKNFPYSSLLFSHIAPHP 84
Query: 93 NLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
N + FN++IR L H + +S F M+ LS+ P+ T+PF S A+L+ LS
Sbjct: 85 NDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAA 144
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H L+ K + D L Y + G A KVFDE P ++ + WN +I G +K
Sbjct: 145 HSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDS----VSWNSMIAGYAK 200
Query: 212 IGYLRKAVELFGMMPKKN-----------------------VASWV-------------- 234
G R+AVE+F M +++ + WV
Sbjct: 201 AGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY 260
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+LI + + G+L+ A +F+ M + V++W A+I+G++QNG A++A+ +F M +
Sbjct: 261 IGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDC 320
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V AN T+ + LSACA +GAL+ G ++ Y S F + TAL+DMYAK G+++ A
Sbjct: 321 VTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQ 380
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWY 409
VF + +K+ +W AMI LA HG+ ++A+ F+ M G P+ F+ +L+AC +
Sbjct: 381 RVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVH 440
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V FD M + + P ++H++ +V+LL+R G + +A + I KMPE PD V G
Sbjct: 441 AGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLG 500
Query: 470 ALFCACRTHKDTKIAKIALQ----------------SSCSLNLSIPQAMSYCQTFMQQKG 513
AL ACR+ K+ I + ++ S NL++ + + + M+QKG
Sbjct: 501 ALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKG 560
Query: 514 DGRT 517
+T
Sbjct: 561 ITKT 564
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/496 (34%), Positives = 250/496 (50%), Gaps = 49/496 (9%)
Query: 47 LRQIHAQIILH-NLFASSRITTQLISSASLHKSI-DYALSIF--DHFTPKNLHIFNVLIR 102
L Q+HA +I L S++ L+ +A+ ++ YA+S+F P + +NVL+R
Sbjct: 32 LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91
Query: 103 GLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
H + + F+ ML + ++ T KS + + L +GRG+ VK G+
Sbjct: 92 AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
D FV L MY G A VFD E V++WN ++ K G + VE
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESG----VVMWNAIVAAYLKNGDWMEVVE 207
Query: 221 LFGMMPKKNVA----------------------SWVS-----------------LIDGFM 241
+F M + VA WV+ L+D +
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
+ G++ KA LF+ M + VV+W+AMI+G++Q + +AL +F +M A V ND T+VS
Sbjct: 268 KCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVS 327
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
LSACA +GALE G VH+Y+ L +GTALVD YAKCG I+ A F K+
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKN 387
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
TWTA+I G+A +GR +A++ F M +G EP F+ +L AC +S V+ FD
Sbjct: 388 SWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFD 447
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM DY I+P V+H+ +V+LL R G VD+A FI MP P+ VIW AL +C H++
Sbjct: 448 SMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNV 507
Query: 482 KIAKIALQSSCSLNLS 497
I + AL+ SLN S
Sbjct: 508 GIGEEALKQIISLNPS 523
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/354 (19%), Positives = 136/354 (38%), Gaps = 35/354 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ +T +++ K + + + L + ++ T L+ + I A +F
Sbjct: 220 DEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLF 279
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +++ ++ +I G + + + F M V PN +T V + A L L
Sbjct: 280 DGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALE 339
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H + + + + L D Y + G A + F+ P KN W LI
Sbjct: 340 TGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNS----WTWTALI 395
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP----- 257
G + G R+A+ELF M + + +++ ++ +++ F+ M
Sbjct: 396 KGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGI 455
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ V + M++ + G ++A M + N + LS+CA
Sbjct: 456 KPRVEHYGCMVDLLGRAGLVDEAYQFIRTM---PIEPNAVIWRALLSSCA---------- 502
Query: 318 VHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDL 362
VH + + LK I L ++YA G + A++V E K++ +
Sbjct: 503 VHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGI 556
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 283/573 (49%), Gaps = 75/573 (13%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
TN +SH I ++SL+ + S ++++IHAQ+I L + ++L++ ++
Sbjct: 43 TNWNASHVL---IQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAIS 99
Query: 77 --KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYP 133
+++DY I ++ N +N+ IRG E+ + + + + MLR S P+ TYP
Sbjct: 100 EWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYP 159
Query: 134 FVSKSVASLSL-----------LSLGRG---------LHCLI----------------VK 157
+ K A SL + LG +H L+ V+
Sbjct: 160 LLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVR 219
Query: 158 SGVEYDA----FVRVHLAD----MYVQLGKTRG----------------------AFKVF 187
V +++ +VR LAD +Y ++G+ K+
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH 279
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
E + +V L N L++ K + A LF M KK V SW +++ G+ + G L+
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF +MPEK VV W A+I GF Q +++ALA+F +M + V + TVV+ LSAC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
++GAL+ G+ +H+Y+ ++ + A+GTALVDMYAKCGNI+ A VF E ++ LTWTA
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTA 459
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I GLA+HG+ AI YF +M+ G PD F+ +L+AC + G V ++F M Y
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P +KH++ +V+LL R G +++A I MP PD V+WGALF R H + + + A
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L+ P GD W +
Sbjct: 580 ASKLLELD---PHDGGIYVLLANMYGDANMWEQ 609
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 114/291 (39%), Gaps = 40/291 (13%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++S + IT + +S + +H + HNL + + T
Sbjct: 368 RSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGT 427
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I A+ +F+ +N + +I GLA + + IS+F M+ + + P
Sbjct: 428 ALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T+ V + L+ GR D + Q+ G
Sbjct: 488 DEITFIGVLSACCHGGLVDQGR----------------------DYFYQMTSKYGI---- 521
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL 246
S + ++ L++ + G+L +A EL MP + + W +L G G++
Sbjct: 522 --------SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNV 573
Query: 247 ----KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+ A +L E P G + + + N + E+A + M + GV
Sbjct: 574 HMGERAASKLLELDPHDGGI-YVLLANMYGDANMWEQARKVRKMMEERGVE 623
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 255/495 (51%), Gaps = 65/495 (13%)
Query: 60 FASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
FASSR LI+ +L +S ++Y + I N +NV IRG +E+ + + + +
Sbjct: 11 FASSR----LIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAY 66
Query: 118 VFMLRLSV---RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
MLR RP+ TYP + K A L L SLG + + K +E + V M+
Sbjct: 67 KQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMF 126
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--- 231
G+ A KVFDE+P ++ ++ WN LING KIG KA+E++ +M + V
Sbjct: 127 ASCGEMENARKVFDESPVRD----LVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDD 182
Query: 232 -----------------------SWV-------------SLIDGFMRKGDLKKA------ 249
+V +L+D F + GD+ +A
Sbjct: 183 VTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDN 242
Query: 250 -------GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+LF+ M EK VV W AMI G Q ++ ALA+F +M + ++ T++
Sbjct: 243 LEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHC 302
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LSAC+++GAL+ G+ +H YI + L A+GT+LVDMYAKCGNI A VF + ++
Sbjct: 303 LSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNS 362
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
LT+TA+I GLA+HG AI YF +M+ +G PD F+ +L+AC + G ++ ++F
Sbjct: 363 LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQ 422
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M+ + + P +KH++++V+LL R G +++A + MP D +WGAL CR H + K
Sbjct: 423 MKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVK 482
Query: 483 IAKIALQSSCSLNLS 497
+ + A + L+ S
Sbjct: 483 LGEKAAKKLLELDPS 497
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 174/396 (43%), Gaps = 61/396 (15%)
Query: 52 AQIILHNLFASSRITTQLISSASLH-----KSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
+IL ++F + +AS+H ++ A +FD ++L +N LI G +
Sbjct: 100 GHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKK 159
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ I + M V+P+ +T + S A L L+ G+ + + +G+ +
Sbjct: 160 IGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPL 219
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKN---------KSESVLLWNVLING--------- 208
L DM+ + G A ++FD ++ + + V++WN +I G
Sbjct: 220 ANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQD 279
Query: 209 --------------------------CSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
CS++G L + + + K NVA SL+D
Sbjct: 280 ALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVD 339
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G++ +A +F + + +++TA+I G + +G+A A++ F +M+DAG+ ++ T
Sbjct: 340 MYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 399
Query: 299 VVSALSACAKVGALEAGVRVHNYISC--NDFGLKGAIG--TALVDMYAKCGNIEAAS-LV 353
+ LSAC G ++ G +Y S + F L + + +VD+ + G +E A L+
Sbjct: 400 FIGLLSACCHGGMIQTG---RDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLM 456
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
E D W A+++G +HG + + KK++
Sbjct: 457 ESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLL 492
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 17/267 (6%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV---RANDFTVVSALSACAKVGALEAGVRVH 319
SW I GFS++ + A+ + QML G R + FT CA + G +
Sbjct: 45 SWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMIL 104
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
++ L + A + M+A CG +E A VF E+ +DL++W +I G G E
Sbjct: 105 GHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGE 164
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+AI+ +K M G +PD + ++++C G + F++ ++ + + ++ +
Sbjct: 165 KAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKAN-GLRMTIPLANAL 223
Query: 440 VNLLSRVGQVDKALNFINKMP------------ETPDFVIWGALFCACRTHKDTKIAKIA 487
+++ S+ G + +A + + E D V+W A+ K ++ A
Sbjct: 224 MDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALAL 283
Query: 488 LQSSCSLNLSIPQ-AMSYCQTFMQQKG 513
Q + N + M +C + Q G
Sbjct: 284 FQEMQTSNTDPDEITMIHCLSACSQLG 310
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 111/260 (42%), Gaps = 11/260 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++S+ + IT H +S + IH I H+L + + T
Sbjct: 276 RSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGT 335
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I AL +F +N + +I GLA + + IS+F M+ + P
Sbjct: 336 SLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 395
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFK 185
+ +T+ + + ++ GR + KS + ++ + + D+ + G A K
Sbjct: 396 DEITFIGLLSACCHGGMIQTGRDYFSQM-KSRFNLNPQLKHYSIMVDLLGRAGLLEEADK 454
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLR---KAVELFGMMPKKNVASWVSLIDGFMR 242
+ + P + + +W L+ GC G ++ KA + + + +V L+DG
Sbjct: 455 LMESMPMEADAA---VWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYV-LLDGMYG 510
Query: 243 KGDL-KKAGELFEQMPEKGV 261
+ ++ + A M E+GV
Sbjct: 511 EANMWEDAKRARRMMNERGV 530
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 232/432 (53%), Gaps = 43/432 (9%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
R + TY F+ K++++ + + R +H +VK G D FV L D Y + G A K
Sbjct: 126 RRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 184
Query: 186 VFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKA 218
VFDE PE++ + + WN +++G +K G + A
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 244
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
ELF MP++NV SW +++ G+ +KGDL+ A +F++MP K +V+WT M++ +Q G +
Sbjct: 245 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 304
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F QM +A V + VVS L+ACA+ G+L G R+H Y+ + G + AL+
Sbjct: 305 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 364
Query: 339 DMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
DM+ KCG + A VF ET +KD ++W ++I G A+HG ++A++ F +M G PD
Sbjct: 365 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 424
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ +L+AC + G V F +M DY I P ++H+ +++LL R G + +A++ I
Sbjct: 425 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 484
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA------LQSSCSLNLSI--------PQAMS 503
MP P+ VIWG+L ACR HK+ + A+IA LQ S + N ++ Q
Sbjct: 485 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 544
Query: 504 YCQTFMQQKGDG 515
+ MQ KG G
Sbjct: 545 MAKARMQMKGTG 556
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 275 GEAEKALAMFFQMLDAGVRANDFT---VVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
G ALA F M R + FT ++ ALSA A V + A VH+++
Sbjct: 112 GAPRDALAAFSAM----PRRDSFTYSFLIKALSA-AGVAPVRA---VHSHVVKLGSVEDT 163
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+G AL+D Y+K G A VF E E+D+++W + + G + F +M
Sbjct: 164 FVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM--- 220
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
E D + IL +G+V+ A F M E +V + +V+ + G ++
Sbjct: 221 -PEKDTVSWNTILDGYTKAGEVEAAFELFQRM-----PERNVVSWSTMVSGYCKKGDLEM 274
Query: 452 ALNFINKMPETPDFVIWGALFCAC 475
A +KMP + + V W + AC
Sbjct: 275 ARVIFDKMP-SKNLVTWTIMVSAC 297
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ ++S ++ A IFD KNL + +++ A+ F M SV
Sbjct: 260 STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 319
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ + + A LSLG+ +H + K + V L DM+ + G A V
Sbjct: 320 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 379
Query: 187 FD-ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
FD ET +K+ + WN +I G + G+ KA+ELF M ++
Sbjct: 380 FDTETVQKDS----VSWNSIIGGFAMHGHGDKALELFAQMKQQ 418
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 258/502 (51%), Gaps = 43/502 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T I+ L+ S + +HA I +++ + T LI + ++ S++ A F
Sbjct: 40 NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF 99
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D K++ + ++ AEN FQ + F M + PN T+ V K+ L S
Sbjct: 100 DAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFS 159
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G+ +H ++K+ E D +V V L D+Y + G +VF+E P+ + V+ W+ +I
Sbjct: 160 VGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHD----VIPWSFMI 215
Query: 207 NGCSKIGYLRKAVELFGMMPKK-------------------------------------- 228
+ ++ R+AVELFG M +
Sbjct: 216 SRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD 275
Query: 229 -NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
NV +L+D + + G L + +LF ++P + V+W MI G+ Q+G+ +KAL+++ M
Sbjct: 276 GNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
L+ V+A++ T S L ACA + A+E G ++H+ + +G AL+DMYAKCG+I
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSI 395
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ A LVF E+D ++W AMI G ++HG +A++ F+ M + P+ F++IL+AC
Sbjct: 396 KNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSAC 455
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+G + + N+F SM DY IEP ++H+T +V LL R G +DKA+ I ++P P+ +
Sbjct: 456 SNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKV 515
Query: 468 WGALFCACRTHKDTKIAKIALQ 489
W AL AC H D + ++ Q
Sbjct: 516 WRALLGACVIHNDVDLGIMSAQ 537
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP++ VS+ +I G+ Q+ + ++ + +F ++ G N F + L V E
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H I +GTAL+D YA CG++ +A F KD+++WT M+ A +
Sbjct: 61 YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
R++ ++Q F +M G P+ F +L AC
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 140/381 (36%), Gaps = 68/381 (17%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N F LI+G ++ + F + R N + + K + S+ L L
Sbjct: 4 RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H I K G E +AFV L D Y G A + FD
Sbjct: 64 HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDA---------------------- 101
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ K++ SW T M+ +
Sbjct: 102 -------------IACKDMVSW-------------------------------TGMVACY 117
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
++N + +L +F +M G N FT L AC + A G VH + + +
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+G L+D+Y K G+ VF E + D++ W+ MI A + +A++ F +M +
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
P+ F ++L +C ++L + ++ +V ++++ ++ G++D
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHV-LKVGLDGNVFVSNALMDVYAKCGRLDN 296
Query: 452 ALNFINKMPETPDFVIWGALF 472
++ ++P + V W +
Sbjct: 297 SMKLFMELPNRNE-VTWNTMI 316
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 252/479 (52%), Gaps = 14/479 (2%)
Query: 21 SSHKPSNNITETHI--ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
S+H+ + ++T+ I + + + R +HA +++ L + +L+S +
Sbjct: 794 STHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQ 853
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +FD N+ + VL A ++ +S F M + +RPN+ P + K+
Sbjct: 854 LSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKA 913
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
LS G +H +I+K+ E DA++ L MY + G A +VFD +K+
Sbjct: 914 CGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD---- 969
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
+++ N +++G ++ G++ +A++L M K NV SW +LI GF + GD E+F
Sbjct: 970 LVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 1029
Query: 255 QMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
M GV VSWT++I+GF QN + F +MLD G + T+ S L AC V
Sbjct: 1030 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 1089
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L G +H Y + +ALVDMYAKCG I A ++F E++ +TW ++I+
Sbjct: 1090 NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIF 1149
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G A HG +AI+ F +M S T+ D F A+L AC ++G V+L + F M+ Y IE
Sbjct: 1150 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIE 1209
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++H+ +V+LL R G++ +A + I MP PD +WGAL ACR H + ++A++A +
Sbjct: 1210 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAE 1268
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/478 (27%), Positives = 228/478 (47%), Gaps = 44/478 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R+ H ++ L + + T LI + +D A+ ++D T + N LI A N
Sbjct: 133 RRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARN 192
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
F F+ + + RPN TY + ++S + G+ LH +VK + V
Sbjct: 193 GFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVG 252
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
L +Y + G A VF+ ++N ++ W ING + G +KA++ F MM
Sbjct: 253 NALLTLYSKCGMMEEAEIVFESLRQRN----IISWTASINGFYQHGDFKKALKQFSMMRE 308
Query: 227 ----------------------------------KKNVASWV----SLIDGFMRKGDLKK 248
KK +AS V ++ID + G++ +
Sbjct: 309 SGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDE 368
Query: 249 AGELFEQMPEKGV-VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A + F+QM VSW A+I G+ N + EKA+ F +M+ V N+FT + AC+
Sbjct: 369 AEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACS 428
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+L V++H+ + ++ + ++L++ Y +CG++E A VF + + D+++W +
Sbjct: 429 SFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNS 488
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I + +G +AI +KM+ G +P FL +L+AC +SG V+ FF SM DY
Sbjct: 489 IIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDY 548
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
I+P H + +V++L R GQ++ AL+FI K+ P IW L ACR + + ++A+
Sbjct: 549 SIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAE 606
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 197/468 (42%), Gaps = 79/468 (16%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+ T + ++++ + ++ ++ +Q+HA ++ + + + L++ S ++ A +F
Sbjct: 213 NHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVF 272
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ +N+ + I G ++ F+ + F M + PN T+ V S +
Sbjct: 273 ESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFI 332
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR H ++K G+ FV + DMY LG+ A K F + ++ S + WN LI
Sbjct: 333 DGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM---GRAASNVSWNALI 389
Query: 207 NG-----------------------------------CSKIGYLRKAVELFGMMPKKNVA 231
G CS L V++ + K NV
Sbjct: 390 AGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVE 449
Query: 232 SWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
S + SLI+ + + G L+ A ++F Q+ + VVSW ++I +SQNG+ KA+ + +M
Sbjct: 450 SNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKM 509
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
++ G + T ++ LSAC+ G ++ G
Sbjct: 510 IEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFK--------------------------- 542
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
S+V + + + + M+ L G+ E A+ + KK+ +P +++ +L AC
Sbjct: 543 ---SMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLT---MKPTASIWRPLLAAC 596
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALN 454
Y+ +++A + D +EP+ + + N+ + VG+ A N
Sbjct: 597 RYNSNLQMA-EYVAEKILD--LEPNDATVYVTLSNMYAEVGRWADAEN 641
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 48/377 (12%)
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ LGR HC +VK G+ D FV L DMY + G+ A +V+D K S N
Sbjct: 129 VELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD----KMTSLDAATCNC 184
Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------ 234
LI+ ++ G+ +A ++F G P S +
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQ 244
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L+ + + G +++A +FE + ++ ++SWTA INGF Q+G+ +KAL F
Sbjct: 245 YLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFS 304
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M ++G+ N+FT L++C V G H + +GTA++DMY+ G
Sbjct: 305 MMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLG 364
Query: 346 NIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
++ A F + + ++W A+I G ++ + E+A++ F +M+ + + I
Sbjct: 365 EMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIF 424
Query: 405 TACWYSGQVKLALNF-FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
AC S LA S +E ++ + ++ ++ G ++ A+ ++ +
Sbjct: 425 KAC--SSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDA- 481
Query: 464 DFVIWGALFCACRTHKD 480
D V W ++ A + D
Sbjct: 482 DVVSWNSIIKAYSQNGD 498
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 22/271 (8%)
Query: 223 GMMPKKNV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-AMINGFSQNGEAEKA 280
G M K NV WV DL A LFE+ P++ VS T + +G + + E
Sbjct: 42 GCMSKGNVVGGWV----------DLNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVK 91
Query: 281 LAMFFQMLD------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
A FF + G + V SALS C + G +E G R H ++ G +
Sbjct: 92 EAGFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVC 151
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
T+L+DMYAKCG +++A V+ + D T +I A +G + QA Q F ++ GT
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ + +L C ++ ++ Y E +V + ++ L S+ G +++A
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGN--ALLTLYSKCGMMEEAE 269
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ + + + W A H D K A
Sbjct: 270 IVFESLRQR-NIISWTASINGFYQHGDFKKA 299
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 237/459 (51%), Gaps = 38/459 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E I+ L+H + L +IH + H L S++I +S + + + YA +F H
Sbjct: 8 ERKILRLLHGGKTRSHLTEIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLFAHTH 67
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ +FN +I+ + + F + S F M ++ P+ T + KS ++L LG
Sbjct: 68 NPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGC 127
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H +V+ G A VRV ++Y + A KVFDE
Sbjct: 128 VHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDE--------------------- 166
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
M +V W +I GF + GDL+ ++F QM E+ VVSW M++
Sbjct: 167 --------------MRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSC 212
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
++N + EKAL +F +ML+ G +D ++V+ L CA++GA++ G +H+Y + F L+
Sbjct: 213 LAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGF-LQ 271
Query: 331 GAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
I G +LVD Y KCGN++AA +F + K++++W AMI GLA +G E + F++M
Sbjct: 272 DTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEM 331
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
++ G EP+ + F+ +L C + G V + F SM + + P ++H+ VV+LL R G
Sbjct: 332 VHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGH 391
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V +A + I MP P +WGAL ACRT+ D +IA+ A
Sbjct: 392 VREARDLITSMPLKPTAALWGALLSACRTYGDREIAENA 430
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 232/432 (53%), Gaps = 43/432 (9%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
R + TY F+ K++++ + + R +H +VK G D FV L D Y + G A K
Sbjct: 433 RRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 491
Query: 186 VFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKA 218
VFDE PE++ + + WN +++G +K G + A
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 551
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
ELF MP++NV SW +++ G+ +KGDL+ A +F++MP K +V+WT M++ +Q G +
Sbjct: 552 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 611
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F QM +A V + VVS L+ACA+ G+L G R+H Y+ + G + AL+
Sbjct: 612 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 671
Query: 339 DMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
DM+ KCG + A VF ET +KD ++W ++I G A+HG ++A++ F +M G PD
Sbjct: 672 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 731
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ +L+AC + G V F +M DY I P ++H+ +++LL R G + +A++ I
Sbjct: 732 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 791
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA------LQSSCSLNLSI--------PQAMS 503
MP P+ VIWG+L ACR HK+ + A+IA LQ S + N ++ Q
Sbjct: 792 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 851
Query: 504 YCQTFMQQKGDG 515
+ MQ KG G
Sbjct: 852 MAKARMQMKGTG 863
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 29/209 (13%)
Query: 274 NGEAEKALAMFFQMLDAGVRANDFT---VVSALSACAKVGALEAGVRVHNYI----SCND 326
G ALA F M R + FT ++ ALSA A V + A VH+++ S D
Sbjct: 418 GGAPRDALAAFSAM----PRRDSFTYSFLIKALSA-AGVAPVRA---VHSHVVKLGSVED 469
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+G AL+D Y+K G A VF E E+D+++W + + G + F
Sbjct: 470 T----FVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFD 525
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M E D + IL +G+V+ A F M E +V + +V+ +
Sbjct: 526 EM----PEKDTVSWNTILDGYTKAGEVEAAFELFQRM-----PERNVVSWSTMVSGYCKK 576
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCAC 475
G ++ A +KMP + + V W + AC
Sbjct: 577 GDLEMARVIFDKMP-SKNLVTWTIMVSAC 604
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ ++S ++ A IFD KNL + +++ A+ F M SV
Sbjct: 567 STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 626
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ + + A LSLG+ +H + K + V L DM+ + G A V
Sbjct: 627 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 686
Query: 187 FD-ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
FD ET +K+ + WN +I G + G+ KA+ELF M ++
Sbjct: 687 FDTETVQKDS----VSWNSIIGGFAMHGHGDKALELFAQMKQQG 726
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 260/457 (56%), Gaps = 12/457 (2%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLH--KSIDYALSIFDHFTPKNLHIFNVLIR 102
+ L QIHA ++++ L ++ + +LI SASL ++ YA +F+ ++ I N ++R
Sbjct: 26 RTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLR 85
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G A++ + ++ + M + V P+R T+ FV K+ + L S G +H +V+ G
Sbjct: 86 GSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLL 145
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ +V+ L + G A ++FD++ + +K + W+ + +G +K G + +A+ LF
Sbjct: 146 NEYVKNALILFHANCGDLGIASELFDDSAKAHK----VAWSSMTSGYAKRGKIDEAMRLF 201
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP K+ +W +I G ++ ++ A ELF++ EK VV+W AMI+G+ G ++AL+
Sbjct: 202 DEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALS 261
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-----SCNDFGLKGAIGTAL 337
+F +M DAG + T++S LSACA +G LE G R+H YI + + I AL
Sbjct: 262 IFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNAL 321
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG+I+ A VF K++DL TW +I GLA+H E +++ F++M P+
Sbjct: 322 IDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNE 380
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+ ++ AC +SG+V +F MR Y IEP++KH+ +V++L R G +++A F+
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVE 440
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
M P+ ++W L AC+ + + ++ K A + S+
Sbjct: 441 SMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 477
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 253/489 (51%), Gaps = 14/489 (2%)
Query: 21 SSHKPSNNITETHI--ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
S+H+ + ++T+ I + + + R +HA +++ L + +L+S +
Sbjct: 18 STHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQ 77
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +FD N+ + VL A ++ +S F M + +RPN+ P + K+
Sbjct: 78 LSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKA 137
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
LS G +H +I+K+ E DA++ L MY + G A +VFD +K+
Sbjct: 138 CGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD---- 193
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
+++ N +++G ++ G++ +A+ L M K NV SW +LI GF + GD E+F
Sbjct: 194 LVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 253
Query: 255 QMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
M GV VSWT++I+GF QN + F +MLD G + T+ S L AC V
Sbjct: 254 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 313
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L G +H Y + +ALVDMYAKCG I A ++F E++ +TW ++I+
Sbjct: 314 NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIF 373
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G A HG +AI+ F +M S T+ D F A+L AC ++G V+L + F M+ Y IE
Sbjct: 374 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIE 433
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +V+LL R G++ +A + I MP PD +WGAL ACR H + ++A++A +
Sbjct: 434 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEH 493
Query: 491 SCSLNLSIP 499
L P
Sbjct: 494 LFELEPESP 502
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 164/519 (31%), Positives = 260/519 (50%), Gaps = 80/519 (15%)
Query: 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVL 100
+ +R IHAQ+I L ++ ++L+ + D YA+S+FD NL I+N +
Sbjct: 1 SSSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTM 60
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
RG A +S S + ++ M+ L + P+ T+PF+ KS A + G+ +H ++K G
Sbjct: 61 FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------------------- 194
+ D +V L MY Q G+ A KVFD + ++
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180
Query: 195 -KSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PK------------------- 227
+ V+ WN +I+G + G ++A+ELF M P
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240
Query: 228 -KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
++V SW+ +LID + + G+++ A ELF+ + K V+SW +I G++
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
++AL +F +ML +G ND T++S L ACA +GA++ G +H YI+ LKG +
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKK---LKGVV 357
Query: 334 G------TALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
T+L+DMYAKCG+I+AA VF + + L TW AMI G A+HGR A F
Sbjct: 358 TNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFS 417
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M +G EPD F+ +L+AC +SG + L N F SM Y I P ++H+ +++LL
Sbjct: 418 RMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHS 477
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
G +A IN MP PD VIW +L AC+ H + ++ +
Sbjct: 478 GLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGE 516
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 50/369 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-V 125
T LI+ I+ A +FD K++ +N +I G E +++ + F M+ ++ V
Sbjct: 159 TALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNV 218
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RP+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 219 RPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACE 278
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------- 228
+FD K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 279 LFDGLWNKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 334
Query: 229 -----NVASWV--------------------SLIDGFMRKGDLKKAGELFE-QMPEKGVV 262
++ W+ SLID + + GD+ A ++F+ M + +
Sbjct: 335 HLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLS 394
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+W AMI+GF+ +G A A +F +M G+ +D T V LSAC+ G L+ G + +
Sbjct: 395 TWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 454
Query: 323 SCN-DFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + K ++D+ G EA ++ E D + W +++ IHG E
Sbjct: 455 TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLEL 514
Query: 381 AIQYFKKMM 389
+ KK++
Sbjct: 515 GESFAKKLI 523
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 127/298 (42%), Gaps = 18/298 (6%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++S S+S + R +H+ I H ++ +I LI S ++ A +FD
Sbjct: 224 TMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL 283
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K++ +N LI G + ++ + F MLR PN +T + + A L + +GR
Sbjct: 284 WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343
Query: 150 GLHCLI---VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+H I +K V + ++ L DMY + G A +VFD + N+S S WN +I
Sbjct: 344 WIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSS-MSNRSLST--WNAMI 400
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+G + G A ++F M + ++V L+ G L +F M +
Sbjct: 401 SGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEI 460
Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+ + MI+ +G ++A M M + + S L AC G LE G
Sbjct: 461 TPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKACKIHGNLELG 515
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 255/497 (51%), Gaps = 47/497 (9%)
Query: 24 KPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--ID 80
KPS+ T+ + + + S + +Q HA ++ +L + +++LIS +L S ++
Sbjct: 3 KPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN 62
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
YA +F + I N +IRG A + + +S + FM+ V + TYPFV + A
Sbjct: 63 YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L + LGR HC ++K+G D FV L Y G A VFDE+ ++ V+
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD----VV 178
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK--------------------------------- 227
WN++IN G KA +L M K
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238
Query: 228 -------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+N+ +++D + + D++ A E+F ++ EK V+SWT+M++G +++G ++A
Sbjct: 239 SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEA 298
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
LA+F +M + ++ T+V LSACA+ GAL+ G +H I + + TALVDM
Sbjct: 299 LALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDM 358
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG+I+ A VF + +++ TW A+I GLA+HG E AI F +M + PD F
Sbjct: 359 YAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTF 418
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+A+L AC ++G V L F +M+ + IEP ++H+ VV+LL R +VD AL FI MP
Sbjct: 419 IALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP 478
Query: 461 ETPDFVIWGALFCACRT 477
+ V+W L ACR+
Sbjct: 479 IKANSVLWATLLGACRS 495
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/484 (32%), Positives = 250/484 (51%), Gaps = 49/484 (10%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLHIFNVLIRG 103
QL+QIHAQ++ LF +++++ SL +S + YA +F + N +IRG
Sbjct: 3 QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+ + Q + + M+ + P+R T+P + KS + S G+ +HC K G D
Sbjct: 63 CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASD 119
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
+ + L +MY G A KVFD+ +K +V+ W +I ++ +AV LF
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDK----TVVSWATMIGVHAQWDQPNEAVRLFD 175
Query: 224 MMPK---------------------------KNVASWVS-------------LIDGFMRK 243
M K K + ++ L+D + +
Sbjct: 176 RMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC 235
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G ++ A +LF++ EK + SW MING ++ E+AL +F +M G++ + T+ S L
Sbjct: 236 GCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLL 295
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
AC +GALE G +H YI + A+GTALVDMYAKCG+IE A VF E EKD++
Sbjct: 296 LACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVM 355
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
TWTA+I GLA+ G+ E A+QYF +M G +PD F+ +L AC ++G V ++ F+SM
Sbjct: 356 TWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSM 415
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
Y I+P+++H+ +V++L R G++ +A I MP PD + G L ACR H + +
Sbjct: 416 SDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEA 475
Query: 484 AKIA 487
A+ A
Sbjct: 476 AERA 479
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 16/308 (5%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+KS + N +T ++++ + +++IH I H + T L+
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +FD KNL +N++I G E+S+++ + F M ++ +++T + +
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L L LG+ LH I K ++ D + L DMY + G A +VF E PEK+
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD---- 353
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
V+ W LI G + G A++ F M K V ++V ++ G + + F
Sbjct: 354 VMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFN 413
Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + + + +++ + G +A + M A + F + L AC
Sbjct: 414 SMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMA---PDQFVLGGLLGACRIH 470
Query: 310 GALEAGVR 317
G LEA R
Sbjct: 471 GNLEAAER 478
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 205/373 (54%), Gaps = 37/373 (9%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
ML PN LT+ F+ + AS L G+ +H +KSG ++D + L DMY
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMY----- 55
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
+K+G L A ++F M +++ +W SLI G
Sbjct: 56 ------------------------------AKLGVLMLARQVFDEMTVRDIPTWNSLIAG 85
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFT 298
+ R GD++ A ELF+ MP + VVSWT MI+G+SQNG KAL MF +M D VR N+ T
Sbjct: 86 YSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVT 145
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET- 357
+ S SACAK+GALE G R+ +Y N + L++MYA+CG I+AA VF E
Sbjct: 146 IASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIG 205
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K ++L +W +M+ GLA+HGR +A+Q + +M+ G EPD F+ ++ AC + G V
Sbjct: 206 KRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGW 265
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F SM ++ I P ++H+ +V+LL R G++ +A + + MP PD VIWG L AC
Sbjct: 266 QLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSF 325
Query: 478 HKDTKIAKIALQS 490
H + + A+IA +S
Sbjct: 326 HSNVEFAEIAAES 338
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 172/545 (31%), Positives = 260/545 (47%), Gaps = 68/545 (12%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-------- 55
H+ R+ P + + PS +L + + Q+HA ++
Sbjct: 43 HLRTRMAATALPAARLPAPGMPSPARQTPRRAAL-------RDVPQLHATLLKSGAMTTS 95
Query: 56 ---LHNLFASSRITTQLISSASLHKSIDYALSIF--DHFTPKNLHIFNVLIRGLAENSHF 110
H+L ++ + SSA L YA+ +F P++ +N+LIR H
Sbjct: 96 PDSFHSLLEAAALPAPATSSAHL----SYAIRLFRLGPHPPRSARSYNILIRSFLRAGHP 151
Query: 111 QSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + FV ML +V P++ T KS + + LS+GRG+ K G D FV
Sbjct: 152 EDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNS 211
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------- 222
L MY G A +F K V+ WN +I G K G ++ VE+F
Sbjct: 212 LIHMYASCGDVVAAHVLFHTVQVKG----VIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR 267
Query: 223 ---------------GMMPKKNVASWVS-----------------LIDGFMRKGDLKKAG 250
G + N+ W++ L+D + + G+L KA
Sbjct: 268 APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKAR 327
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF++M + VV+W+AMI+G++Q+ +ALA+F +M V ND T+VS LSACA +G
Sbjct: 328 RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLG 387
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
ALE G VH+YI D L +GTALVD YAKCG I+ A F ++ TWTA+I
Sbjct: 388 ALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIK 447
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G+A +GR +A++ F M+ + EP F+ +L AC + V+ F SM DY I
Sbjct: 448 GMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGIC 507
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +V+LL R G +D+A FI MP P+ V+W AL AC HK+ +I + AL+
Sbjct: 508 PRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQ 567
Query: 491 SCSLN 495
L+
Sbjct: 568 IVPLD 572
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 241/465 (51%), Gaps = 48/465 (10%)
Query: 38 IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I++ + + L QIHA I + + A++ I +S H+ +DYA IF+ +N
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +IRG +E+ ++ I+ +F +S V PNR T+P V K+ A + G+
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----------TPEKNKSESVL 200
+H L +K G D FV +L MYV G + A +F + T + + ++
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
LWNV+I DG+MR GD K A LF++M ++
Sbjct: 210 LWNVMI-------------------------------DGYMRLGDCKAARMLFDKMRQRS 238
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW MI+G+S NG + A+ +F +M +R N T+VS L A +++G+LE G +H
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + + +G+AL+DMY+KCG IE A VF ++++TW+AMI G AIHG+
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI F KM +G P ++ +LTAC + G V+ +F M +EP ++H+ +V
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+LL R G +D+A FI MP PD VIW AL ACR + ++ K
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK 463
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 17/290 (5%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +++ +N +I G + N F+ + F M + +RPN +T V +++
Sbjct: 227 ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISR 286
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L LG LH SG+ D + L DMY + G A VF+ P +N V+
Sbjct: 287 LGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPREN----VIT 342
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
W+ +ING + G A++ F M + V ++++L+ G +++ F QM
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMV 402
Query: 258 -----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E + + M++ ++G ++A M ++ +D + L AC G +
Sbjct: 403 SVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM---PIKPDDVIWKALLGACRMQGNV 459
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
E G RV N + GA AL +MYA GN S + KEKD+
Sbjct: 460 EMGKRVANILMDMVPHDSGAY-VALSNMYASQGNWSEVSEMRLRMKEKDI 508
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 224/411 (54%), Gaps = 39/411 (9%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+DYA + + +N +IRG + + + + IS ++ MLR + P+ +TYPF+ K
Sbjct: 803 DVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMK 862
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
S + LS LG LHC +VKSG+E+D F+ L MY A K+FDE
Sbjct: 863 SSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDE-------- 914
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
MP KN+ +W S++D + + GD+ A +F++M
Sbjct: 915 ---------------------------MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMS 947
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGV 316
E+ VV+W++MI+G+ + GE KAL +F QM+ G +AN+ T+VS + ACA +GAL G
Sbjct: 948 ERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGK 1007
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAI 374
VH YI L + T+L+DMYAKCG+I A VF KE D L W A+I GLA
Sbjct: 1008 TVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLAS 1067
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HG +++Q F KM S +PD FL +L AC + G VK A +FF S++ + EP +
Sbjct: 1068 HGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSE 1126
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
H+ +V++LSR G V A +FI++MP P + GAL C H + ++A+
Sbjct: 1127 HYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAE 1177
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/513 (19%), Positives = 207/513 (40%), Gaps = 82/513 (15%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
++ K L + + L ++ AS+ LI + + + ++ I + ++ ++VLI
Sbjct: 562 DACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLI 621
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
+ L + F M+ ++P TY + + RGL C++ E
Sbjct: 622 KALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEG--EIDRGLSCIVRMYEDE 679
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVF--DETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ V + + ++ R + +F +E K+ + + + LI G K G+ +A+
Sbjct: 680 KNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEAL 739
Query: 220 ELFGMMPKK--------------------NVASWVSLIDGFMRKG--------------- 244
F M +K N+ + + + KG
Sbjct: 740 VYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVN 799
Query: 245 ---DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
D+ A + ++ + W +I GFS + EK+++++ QML G+ + T
Sbjct: 800 VTSDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPF 859
Query: 302 ALSACAKVGALEAGVRVH----------NYISCNDF-GLKGAIG---------------- 334
+ + +++ + G +H + CN + G+
Sbjct: 860 LMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKN 919
Query: 335 ----TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+++D YAK G++ +A LVF E E+D++TW++MI G G Y +A++ F +MM
Sbjct: 920 LVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMR 979
Query: 391 SGTEPDGTV-FLAILTACWYSGQVKLALNFFDSMR---FDYFIEPSVKHHTVVVNLLSRV 446
G+ V ++++ AC + G ALN ++ D + +V T ++++ ++
Sbjct: 980 MGSSKANEVTMVSVICACAHLG----ALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKC 1035
Query: 447 GQVDKALN-FINKMPETPDFVIWGALFCACRTH 478
G + A + F + D ++W A+ +H
Sbjct: 1036 GSIGDAWSVFYRASVKETDALMWNAIIGGLASH 1068
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/438 (20%), Positives = 178/438 (40%), Gaps = 81/438 (18%)
Query: 79 IDYALSIFDH-----FTPKNLHIFNVLIRGLAENS------------HFQSCISHFVFML 121
+D A S+FD N + +N L+ +++++ + C HF
Sbjct: 157 VDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFHFD--- 213
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLS--LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+ ++ P Y KS +LS+ + L RG D + L + + G+
Sbjct: 214 KFTLTPVLQVYCNTGKSERALSVFNEILSRGW----------LDEHISTILVVSFCKWGQ 263
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
AF++ + E++ + + VLI+G K + KA +LF M + ++A +
Sbjct: 264 VDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDV 323
Query: 236 LIDGFMRKGDLKKAGELFEQM------PEKGVVSWTAMINGFSQNGE------------A 277
LI G + DL+ A L+ ++ P++G++ ++ FS+ E
Sbjct: 324 LIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILG--KLLCSFSEESELSRITEVIIGDID 381
Query: 278 EKALAMFFQMLDAGVRAND-----FTVVSALSACAKVGALEAGVRV---HNYISCNDFGL 329
+K++ + ++ L G ND ++ + L + + V++ HN D
Sbjct: 382 KKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDS 441
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDL----LTWTAMIWGLAIHGRYEQAIQYF 385
+ LV K ++ A + + + L + + +I G+ GR E++++
Sbjct: 442 LSIVINCLV----KANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLL 497
Query: 386 KKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+M +G EP ++ + C + G AL+ MRF Y EP +KH T +V
Sbjct: 498 GEMKDAGVEPSQFTLNCIYGCLAERCDFVG----ALDLLKKMRF-YGFEPWIKHTTFLVK 552
Query: 442 LLSRVGQVDKALNFINKM 459
L G+ A +++ +
Sbjct: 553 KLCENGRAVDACKYLDDV 570
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 162/391 (41%), Gaps = 43/391 (10%)
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNL-HIFNVLIRGLAENSHFQSCISHFVFML 121
SRIT +I + S+F+ F +L H I+ L N + +S V +L
Sbjct: 370 SRITEVIIGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGN-YESDGVSEIVKLL 428
Query: 122 R---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
+ ++ P+ + V + + + + L IV++G+ + ++ + + G
Sbjct: 429 KDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEG 488
Query: 179 KTRGAFKVFDETPEKNKSESVL----LWNVLINGCSKIGYLR--KAVELFGMMPKKNVAS 232
++ + K+ E + S ++ L C +G L K + +G P
Sbjct: 489 RSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEP------ 542
Query: 233 WVS----LIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMF 284
W+ L+ G A + + + +G +V+ TA I+G +N ++ L +F
Sbjct: 543 WIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELF 602
Query: 285 FQMLDAGVRANDFTVVSAL--SACAKVGALEAGVRVHNYISCNDFGLKGAIGT--ALVDM 340
+ G D L + C +EA + + +S GLK + T +++D
Sbjct: 603 RDICANG-HCPDVIAYHVLIKALCKACRTMEADILFNEMVS---KGLKPTVATYNSMIDG 658
Query: 341 YAKCGNIEAA----SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
+ K G I+ ++ + K D++T+T++I GL GR +AI + +M P+
Sbjct: 659 WCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPN 718
Query: 397 GTVFLAI---LTACWYSGQVKLALNFFDSMR 424
F+A+ L C +SG+ AL +F M
Sbjct: 719 RITFMALIQGLCKCGWSGE---ALVYFREME 746
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 172/528 (32%), Positives = 266/528 (50%), Gaps = 77/528 (14%)
Query: 40 SSNSTKQLRQIHAQII---LHN--LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
+S ST +++HA +I LH S I + +SS +LHK A +F+ L
Sbjct: 26 NSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHK----AHLVFNQIECPTL 81
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++N +IRGL+++ H I + M + N LT F+ K+ A +S + GR +H
Sbjct: 82 VVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVH 141
Query: 155 IVKSGVEYDAFVRVHLADMYV---QLG----------------------------KTRGA 183
+K G E FV L MY QLG K +
Sbjct: 142 ALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEV 201
Query: 184 FKVFDETPEKN-KSESVLLWNVLINGCSKIG---------------------YL------ 215
++FD N K+++V + +++ CS +G YL
Sbjct: 202 LRLFDAMTAANIKADAVTMVKIIL-ACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLID 260
Query: 216 ----RKAVEL----FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
R EL F M ++N+ SW +L+ G + G+L A +LF+ MP++ V+SWT+M
Sbjct: 261 MYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSM 320
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G+SQ + A+ +F +M+ A V+ + TV S LSACA +G L+ G VH+YI +
Sbjct: 321 ITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGV 380
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+G +L+DMY KCG +E A VF K+KD ++WT++I GLA++G A+ F +
Sbjct: 381 QADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQ 440
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G +P F+ IL AC ++G V L +F+SM + + P++KH+ VV+LLSR G
Sbjct: 441 MLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSG 500
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+DKA FI KMP PD V+W L AC+ H + +A+IA + L+
Sbjct: 501 NIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELD 548
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 156/439 (35%), Positives = 233/439 (53%), Gaps = 42/439 (9%)
Query: 46 QLRQIHAQIILHNLFASSRITTQL-----ISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
Q++Q HA+I++ L RIT+ L ISS+SL DYALSI++ + + N +
Sbjct: 46 QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPS--DYALSIYNSISHPTVFATNNM 103
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
IR + + IS + M R V PN+ T FV ++ ++ + G + ++K G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
D FVR L +Y + A +VFDE P
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSS-------------------------- 197
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
++V SW S+I GF+R G + A +LF +MPEK V+SW +I+G QNGE EK
Sbjct: 198 --------RDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEK 249
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL F ++ + +R N+ +VS L+A A++G LE G R+H+ + F + ++GTALVD
Sbjct: 250 ALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVD 309
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MYAKCG I+ + +F EKD +W MI GLA HG ++A+ F+K + G P
Sbjct: 310 MYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVT 369
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
F+ +LTAC +G V +FF M Y IEP ++H+ +V+LLSR G V A+ IN+M
Sbjct: 370 FIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRM 429
Query: 460 PETPDFVIWGALFCACRTH 478
P PD V+W ++ +C+ H
Sbjct: 430 PAPPDPVLWASVLGSCQVH 448
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 20/253 (7%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A +F K++ + +I G +N + + +F + +RPN + +
Sbjct: 216 ISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAA 275
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L L G+ +H + A + L DMY + G + +FD PEK+K
Sbjct: 276 AAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWS- 334
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
WNV+I G + G ++A+ LF G P +++ ++ R G + +
Sbjct: 335 ---WNVMICGLATHGLGQEALALFEKFLTQGFHPVN--VTFIGVLTACSRAGLVSEGKHF 389
Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F+ M E + + M++ S+ G A+ M +M + S L +C
Sbjct: 390 FKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRM---PAPPDPVLWASVLGSCQ 446
Query: 308 KVGALEAGVRVHN 320
G +E G + N
Sbjct: 447 VHGFIELGEEIGN 459
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 126/327 (38%), Gaps = 32/327 (9%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
++ + T L+ + ID + +FD K+ +NV+I GLA + Q ++ F L
Sbjct: 300 TASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFL 359
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKT 180
P +T+ V + + L+S G+ L+ + G+E + + D+ + G
Sbjct: 360 TQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFV 419
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE----LFGMMPKKNVASWVSL 236
A ++ + P +LW ++ C G++ E L M P N +V L
Sbjct: 420 YDAVEMINRMPAPPDP---VLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHN-GHYVQL 475
Query: 237 IDGFMRK---GDLKKAGELFEQMPEKGVVSWTAM-----INGFSQNGEAEKALAMFFQML 288
F R D+ K L + + W+ + ++ F + + ++ML
Sbjct: 476 ARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKML 535
Query: 289 D--------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL---KGAIGTAL 337
+ AG AN +V+ + K E ++ H+ FGL K +
Sbjct: 536 EIMGVRIAAAGYSANVSSVLHDIEEEEK----ENAIKEHSERLAIAFGLLVTKDGDCIRI 591
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLT 364
+ CG+ S + E++++
Sbjct: 592 IKNLRVCGDCHEVSKIISLVFEREIIV 618
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 152/434 (35%), Positives = 230/434 (52%), Gaps = 52/434 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE-----NSHFQSCISHFVF 119
+ T+LISS H ++ ++ + F ++N LIR + S IS FV
Sbjct: 3 LPTRLISST--HPTLHFSHPTLESF------LWNTLIRAHVQARAQPTGPTHSPISIFVR 54
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M V+P+ T+PF+ +S AS SLL LGR +H I++ G+ D FV+ L MY G
Sbjct: 55 MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGN 114
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A +VFDE +P+ ++ SW S+I+
Sbjct: 115 LGFARQVFDE-----------------------------------IPQPDLPSWNSIINA 139
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG---VRAND 296
+ G + A LF MPE+ V+SW+ MING+ + G+ ++ALA+F +M G VR N+
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
FT+ L+AC ++GALE G H YI + +GTAL+DMYAKCG++E A+ VF
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSN 259
Query: 357 T-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD++ W+AMI GLA+HG E+ + F KM+ G P+ FLA+ AC + G V
Sbjct: 260 LGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSE 319
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
++ M DY I P+++H+ +V+L R G++ +A N + MP PD ++WGAL
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGS 379
Query: 476 RTHKDTKIAKIALQ 489
R H D + ++AL+
Sbjct: 380 RMHGDIETCELALK 393
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 25/250 (10%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T + +++ + + + HA I + + T LI + S++ A +F
Sbjct: 198 NEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVF 257
Query: 87 DHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ P K++ ++ +I GLA + + C+ F M+ VRPN +T+ V + L+
Sbjct: 258 SNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLV 317
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
S G+ + + +Y + + D+Y + G+ + A+ V P + VL+
Sbjct: 318 SEGKD---YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME---PDVLV 371
Query: 202 WNVLINGCSKIG-------YLRKAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGE 251
W L++G G L+K +EL N ++V L + + ++G D++ +
Sbjct: 372 WGALLSGSRMHGDIETCELALKKLIEL----EPTNSGAYVLLSNVYAKRGRWEDVRHVRD 427
Query: 252 LFEQMPEKGV 261
L E M K V
Sbjct: 428 LMETMGIKKV 437
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 243/465 (52%), Gaps = 39/465 (8%)
Query: 25 PSNNITETHIISL--IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID-- 80
PS + + H + L + S ++ +L+Q H+QII L A + ++I ++ KS D
Sbjct: 12 PSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLN 71
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
YAL +FD + +I+N + RG ++CI + ML SV PN+ TYP + ++
Sbjct: 72 YALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACC 131
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ G+ +H ++K G D F +L MYV A +VFD P+++ V+
Sbjct: 132 IDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD----VV 187
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
W LI G S+ G++ KA E+F +MP++N SW ++I +++ L +A LF++M +
Sbjct: 188 SWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLEN 247
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VV + F S LSAC +GALE G +H
Sbjct: 248 VV-------------------------------LDKFVAASMLSACTGLGALEQGKWIHG 276
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI + L + T ++DMY KCG +E AS VF E +K + +W MI GLA+HG+ E
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI+ FK+M PDG F+ +L+AC +SG V+ ++F M ++P ++H +V
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMV 396
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+LL R G +++A IN+MP PD + GAL ACR H +T++ +
Sbjct: 397 DLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGE 441
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 240/479 (50%), Gaps = 55/479 (11%)
Query: 26 SNNITETH----IISLIHSSNSTKQLRQIHAQIILH---NLFASSRITTQLI-------- 70
SN+IT + II LI + QL Q+HA I + + +S + T+ +
Sbjct: 7 SNHITPQNYHSIIIKLIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAK 66
Query: 71 --SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
SS SL + YA SIF+ + +N +IR S + F M RLSV +
Sbjct: 67 SKSSTSL---LHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLD 123
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
++PF K+ A L + R LHC ++K G D +V L Y+ + A+KVFD
Sbjct: 124 SHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFD 183
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E+P +++V S+ LIDGF++ GD+ K
Sbjct: 184 ESP-----------------------------------QRDVVSYNVLIDGFVKAGDVVK 208
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ELF+ MP + VSW +I G ++ E+A+ +F M+D +R ++ +VS LSACA+
Sbjct: 209 ARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQ 268
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LE G ++H+YI N + + T LVD YAKCG ++ A +F + +K+L TW AM
Sbjct: 269 LGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAM 328
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ GLA+HG E ++YF +M+ +G +PDG L +L C +SG V A FD M Y
Sbjct: 329 LVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYG 388
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ KH+ + +LL R G + K + I MP D +W L CR H D +IA+ A
Sbjct: 389 VPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGCRIHGDVEIAEKA 447
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 245/467 (52%), Gaps = 43/467 (9%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H+PS TH L+H+ S +L+Q+HA ++ N SS +++ S + + S YA
Sbjct: 15 HRPS-----TH---LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYA 66
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
IF + +N +R AE IS F + + P+ T FV K+ + L
Sbjct: 67 KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL 126
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ G+ +H + K G++ + F++ + +Y G+ A KVFD+ P+++ V+ W
Sbjct: 127 LDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRD----VITW 182
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N++I K+G A +LF MP++NV SW S+I G+ + G K+A +L
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDL---------- 232
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
F +M DAG+ N+ TVV+ L ACA +G L G R+H++
Sbjct: 233 ---------------------FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + + + L+DMY KCG +E A +F +E+ +++W+AMI GLA HGR E A+
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F KM+ +G +P+ F+ IL AC + G V+ +F SM DY I P ++H+ +V+L
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
SR G + +A FI MP P+ V+WGAL C+ HK+ K+A+ A +
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATR 438
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 247/473 (52%), Gaps = 43/473 (9%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H+PS TH L+H+ S +L+Q+HA ++ N SS +++ S + + S YA
Sbjct: 15 HRPS-----TH---LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYA 66
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
IF + +N +R AE IS F + + P+ T FV K+ + L
Sbjct: 67 KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL 126
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ G+ +H + K G++ + F++ + +Y G+ A KVFD+ P+++ V+ W
Sbjct: 127 LDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRD----VITW 182
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N++I K+G A +LF MP++NV SW S+I G+ + G K+A +L
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDL---------- 232
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
F +M DAG+ N+ TVV+ L ACA +G L G R+H++
Sbjct: 233 ---------------------FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + + + L+DMY KCG +E A +F +E+ +++W+AMI GLA HGR E A+
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F KM+ +G +P+ F+ IL AC + G V+ +F SM DY I P ++H+ +V+L
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
SR G + +A FI MP P+ V+WGAL C+ HK+ K+A+ A + L+
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 252/492 (51%), Gaps = 47/492 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I+ H + L Q + +I L + + L+ SA+ K + Y L +FD
Sbjct: 11 ILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSAT--KDLGYTLLLFDRLATPY 68
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N ++R + +S Q + + + V P+R T+P + K+ + L + + +
Sbjct: 69 IFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYA 127
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
IVK G+++DAFV+ L + G + ++F ET +K+ V+ W LINGC + G
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKD----VVSWTALINGCLRNG 183
Query: 214 YLRKAVELFGMMPKKNV----------------------ASWV----------------- 234
+A+E F M V WV
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG 243
Query: 235 -SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+D + + G A ++F +MP + +VSW A+I G+ Q ++AL +F +M+ G+
Sbjct: 244 SALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIE 303
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N TV SAL+ACA++G+L+ G +H Y+ + GL +GTALVDMY+KCG ++ A LV
Sbjct: 304 PNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLV 363
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + KD+ WTAMI GLA+ G ++ F +M+ S +P+G FL +L+AC + G V
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F M DY +EP+V H+ +V+LL R G++++A+ FI MP P +WGALF
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483
Query: 474 ACRTHKDTKIAK 485
C HK ++ +
Sbjct: 484 GCMIHKAFELGE 495
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 26/360 (7%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A+ +F+ +NL + LI G + + ++ + F M+ + PN+ T +
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTAC 316
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A L L GR LH + +S + ++ + L DMY + G A VF++ P K+ V
Sbjct: 317 AQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKD----V 372
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQ 255
W +ING + G ++ LF M + V +++ ++ G + + ELF
Sbjct: 373 YPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRL 432
Query: 256 MP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
M E V + M++ + G E+A+ M + + S C
Sbjct: 433 MICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM---PMEPTPGVWGALFSGCMIHK 489
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
A E G + N++ G L ++Y++C EAA+ V K K + A W
Sbjct: 490 AFELGEHIGNHLIKLQPHHSGRY-ILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSW 548
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+ ++G + I + K + S + + L +TA Q+KLA DS + I+
Sbjct: 549 -IEVNGVIHEFIAFDKSHIES---INVYMMLGSVTA-----QLKLATYALDSNLLTFTID 599
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 8/196 (4%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T T ++ S Q R +H + L +S++ T L+ S +D AL +F
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVF 364
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K+++ + +I GLA S ++ F M+R V+PN +T+ V + A L+
Sbjct: 365 EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVD 424
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G L +I +E + + D+ + G+ A K + P + +W L
Sbjct: 425 EGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG---VWGAL 481
Query: 206 INGCSKIGYLRKAVEL 221
+GC + KA EL
Sbjct: 482 FSGC----MIHKAFEL 493
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 237/451 (52%), Gaps = 48/451 (10%)
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-----VRPN 128
S+ + +A +FD +++ +N LI G + + + F RL+ VRP+
Sbjct: 167 SVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELF---WRLAEDGNAVRPD 223
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T A + L LG+ LH + GV + + DMYV
Sbjct: 224 EVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYV------------- 270
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
K G L A +F + + SW ++I G R G ++
Sbjct: 271 ----------------------KCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMED 308
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF++MPE+ V W A++ G+ QN + ++A+A+F +M + V N+ T+V+ LSAC++
Sbjct: 309 ARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQ 368
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GALE G+ VH+YI + L A+GT+LVDMYAKCGNI+ A VF E ++ LTWT+M
Sbjct: 369 LGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSM 428
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG ++AI+YF++M+ G +PD F+ +L+AC ++G V+ FF M Y
Sbjct: 429 ICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYH 488
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
+E +KH++ +++LL R G +D+A +N MP PD V+WGALF ACR H + + + A
Sbjct: 489 LERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAA 548
Query: 489 QSSCSLNLS-----IPQAMSYCQTFMQQKGD 514
L+ S + A Y + M++K D
Sbjct: 549 MKLVELDPSDSGIYVLLANMYAEANMRKKAD 579
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 163/345 (47%), Gaps = 46/345 (13%)
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQ 255
L + LI C+++ Y + G + K ++ V +++ M +G + A LF++
Sbjct: 122 LTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDE 181
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALE 313
P + VVSW +I G+ ++G +AL +F+++ + G VR ++ TV+ A+S CA++G LE
Sbjct: 182 SPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLE 241
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS---------------------- 351
G R+H ++ + A++DMY KCG++E A+
Sbjct: 242 LGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHA 301
Query: 352 ---------LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
++F E E+D+ W A++ G + + ++AI F +M S +P+ +
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVN 361
Query: 403 ILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+L+AC G +++ + ++ D + SV T +V++ ++ G + KA+ N++
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDRHKLHL----SVALGTSLVDMYAKCGNIKKAICVFNEI 417
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
P + + W ++ C H A Q L L P +++
Sbjct: 418 P-VQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ-PDEITF 460
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 24/290 (8%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
TT ++ A L D A +FD +++ +N L+ G +N + I+ F M + V
Sbjct: 294 TTMIVGHARLGMMED-ARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKV 352
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
PN +T + + + L L +G +H I + + + L DMY + G + A
Sbjct: 353 DPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAIC 412
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDG 239
VF+E P +N L W +I G + G+ +A+E F G+ P + +++ ++
Sbjct: 413 VFNEIPVQN----ALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDE--ITFIGVLSA 466
Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G ++ + F M E+ + ++ MI+ + G ++A Q+++A
Sbjct: 467 CCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEA----EQLVNAMPMD 522
Query: 295 NDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
D V AL AC G + G + + D G I L +MYA+
Sbjct: 523 PDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG-IYVLLANMYAE 571
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 235/449 (52%), Gaps = 42/449 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q++QIH + + + + + +L+ +LH YA + H L ++N LI+
Sbjct: 2 RQVKQIHGYTLRNGIDQTKILIEKLLEIPNLH----YAHKVLHHSPKPTLFLYNKLIQAY 57
Query: 105 AEN-SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+ + H C S + ML S PN+ T+ F+ + SLS SLG+ LH +KSG E D
Sbjct: 58 SSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPD 117
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
F L DMY +K+G L A +LF
Sbjct: 118 LFAATALLDMY-----------------------------------TKVGTLELARKLFD 142
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
MP + V +W +++ G R GD+ A ELF MP + VVSWT MI+G+S++ + +AL +
Sbjct: 143 QMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGL 202
Query: 284 FFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
F +M + G+ N T+ S A A +GALE G RV Y N F + A+++MYA
Sbjct: 203 FLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYA 262
Query: 343 KCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
KCG I+ A VF E ++L +W +MI GLA+HG + ++ + +M+ GT PD F+
Sbjct: 263 KCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFV 322
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L AC + G V+ + F SM + I P ++H+ +V+LL R GQ+ +A I +MP
Sbjct: 323 GLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPM 382
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIALQS 490
PD VIWGAL AC H + ++A+IA +S
Sbjct: 383 KPDSVIWGALLGACSFHDNVELAEIAAES 411
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 254/506 (50%), Gaps = 45/506 (8%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
H ++ ETHI + ++ K+L+QIH QII++ + + +L+S ++
Sbjct: 30 EHMDDGSLEETHI-----TCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN 84
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F+ + ++N +IRG +++ + + M+ PN TY F+ A
Sbjct: 85 AHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCAR 144
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
LL G +H +V +G + FVR L ++Y G G
Sbjct: 145 SXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDG------------------- 185
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+RKA +F + +N+ SW SL+ G++R GD+ A +F++MPE+ V
Sbjct: 186 -------------VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNV 232
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSWT MI G +Q G ++AL +F +M AGV+ + +V+ALSACA++G L+ G +H+Y
Sbjct: 233 VSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSY 292
Query: 322 IS----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
I + L ++ +L+ MYA CG I+ A VF +++ ++WT+MI G A G
Sbjct: 293 IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGH 352
Query: 378 YEQAIQYFKKMMYSGTE---PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
E+A+ F+ M GT+ PDG F+ +L AC ++G V +FF+ M + I P ++
Sbjct: 353 AEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIE 412
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
H+ +V+LLSR G +D+A MP P+ +WGAL CR HK+ ++A Q L
Sbjct: 413 HYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQ-KLVL 471
Query: 495 NLSIPQAMSYCQTFMQQKGDGRTWRE 520
L QA Y + W++
Sbjct: 472 ELKPDQAAGYLVLLSNVYATAKRWQD 497
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 252/493 (51%), Gaps = 43/493 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
S +Q R++HA I+ + + + L+S + S+ A +FD +N+ + +I
Sbjct: 110 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
+ + M +P+++T+ + + + LL +G+ +H I K+G+E
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+ V L MY + G A +FD+ PEKN V+ W +LI G ++ G + A+EL
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKN----VVTWTLLIAGYAQQGQVDVALEL 285
Query: 222 FGMMPKKNVAS-------------------------------------WV--SLIDGFMR 242
M + VA WV +LI + +
Sbjct: 286 LEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCK 345
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G LK+A +LF +P + VV+WTAM+ G++Q G ++A+ +F +M G++ + T SA
Sbjct: 346 CGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSA 405
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L++C+ L+ G +H + + L + +ALV MYAKCG+++ A LVF + E+++
Sbjct: 406 LTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+ WTAMI G A HGR +A++YF++M G +PD F ++L+AC + G V+ F S
Sbjct: 466 VAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRS 525
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M DY I+P V+H++ V+LL R G +++A N I MP P +WGAL ACR H D +
Sbjct: 526 MYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVE 585
Query: 483 IAKIALQSSCSLN 495
+ A ++ L+
Sbjct: 586 RGERAAENVLKLD 598
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 182/384 (47%), Gaps = 51/384 (13%)
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A L L GR +H I+KSG++ + ++ L MY + G A +VFD ++N
Sbjct: 104 QECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIV 163
Query: 197 ESVLLWNVLINGCSKIGYLR--KAVELFGMMPKKNVASWVSLIDGFM------------- 241
+ + G + + + ++L G P K ++VSL++ F
Sbjct: 164 SWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK--VTFVSLLNAFTNPELLQVGQKVHM 221
Query: 242 ----------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ GD+ KA +F+++PEK VV+WT +I G++Q G+ +
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL + +M A V N T S L C ALE G +VH YI + +G + + AL+
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG ++ A +FG+ +D++TWTAM+ G A G +++AI F++M G +PD
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401
Query: 400 FLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
F + LT+C ++ + + D +++ + +V++ ++ G +D A
Sbjct: 402 FTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ------SALVSMYAKCGSMDDARL 455
Query: 455 FINKMPETPDFVIWGALFCACRTH 478
N+M E + V W A+ C H
Sbjct: 456 VFNQMSER-NVVAWTAMITGCAQH 478
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 176/392 (44%), Gaps = 47/392 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++H +I L R+ T L+ + I A IFD KN+ + +LI G A+
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ M + V PN++TY + + + L G+ +H I++SG + +V
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L MY + G + A K+F + P ++ V+ W ++ G +++G+ +A++LF
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRD----VVTWTAMVTGYAQLGFHDEAIDLFRRMQQ 392
Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
G+ P K +V +L+ + + G +
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDD 452
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F QM E+ VV+WTAMI G +Q+G +AL F QM G++ + T S LSAC
Sbjct: 453 ARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTH 512
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTW 365
VG +E G R H D+G+K + + VD+ + G++ EA +++ + W
Sbjct: 513 VGLVEEG-RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVW 571
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
A++ IH E+ + + ++ + DG
Sbjct: 572 GALLSACRIHSDVERGERAAENVLKLDPDDDG 603
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 18/277 (6%)
Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
L+ C+++ L + E+ G+ P + + + +L+ + + G L A +F+ + +
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLEN--TLLSMYAKCGSLTDARRVFDGIRD 159
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ +VSWTAMI F + +A + M AG + + T VS L+A L+ G +V
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H I+ L+ +GT+LV MYAKCG+I A ++F + EK+++TWT +I G A G+
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+ A++ +KM + P+ + +IL C LAL + Y I+
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGC----TTPLALEHGKKVH-RYIIQSGYGREIW 334
Query: 439 VVNLL----SRVGQVDKALNFINKMPETPDFVIWGAL 471
VVN L + G + +A +P D V W A+
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAM 370
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
++ A+ ++ + N IT T I+ + + + +++H II +
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVN 337
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI+ + A +F +++ + ++ G A+ I F M + ++P
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP 397
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+++T+ S +S + L G+ +H +V +G D +++ L MY + G A VF
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRK 243
++ E+N V+ W +I GC++ G R+A+E F M K+ + ++ S++
Sbjct: 458 NQMSERN----VVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHV 513
Query: 244 GDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKA----LAMFFQMLDAGVRA 294
G +++ + F M + V ++ ++ + G E+A L M FQ
Sbjct: 514 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQ-------P 566
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ LSAC +E G R + D GA AL ++YA G E A V
Sbjct: 567 GPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAY-VALSNIYAAAGRYEDAEKVR 625
Query: 355 GETKEKDLLTWTAMIW 370
+++D++ W
Sbjct: 626 QVMEKRDVVKEPGQSW 641
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 4/203 (1%)
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ G ++AL + M+ G R L CA++ +LE G VH I +
Sbjct: 71 LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ L+ MYAKCG++ A VF +++++++WTAMI + +A + ++ M
Sbjct: 131 RYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNF-FDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+G +PD F+++L A +++ + + +EP V T +V + ++ G +
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDI 248
Query: 450 DKALNFINKMPETPDFVIWGALF 472
KA +K+PE + V W L
Sbjct: 249 SKAQVIFDKLPEK-NVVTWTLLI 270
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 247/472 (52%), Gaps = 46/472 (9%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDY 81
K I + ISL++S + K+++QIHAQ+++ + + Q +++ +LH + +DY
Sbjct: 2 KSVKRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDY 61
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENS------HFQSCISHFVFMLRLSVRPNRLTYPFV 135
A + +H L N +IR +++S HF + I H ++ P+ T+ F+
Sbjct: 62 ANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILH---SNNNNLSPDNYTFTFL 118
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
++ A L G +H ++K G E D V+ L MY +LG VFD E +
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD- 177
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ ++N C+K G D+ A ++F++
Sbjct: 178 ---LVTQTAMLNACAKCG-------------------------------DIDFARKMFDE 203
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ V+W AMI G++Q G + +AL +F M GV+ N+ ++V LSAC + L+ G
Sbjct: 204 MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG 263
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
VH Y+ + +GTALVDMYAKCGN++ A VF KE+++ TW++ I GLA++
Sbjct: 264 RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMN 323
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E+++ F M G +P+G F+++L C G V+ FDSMR Y I P ++H
Sbjct: 324 GFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEH 383
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ ++V++ R G++ +ALNFIN MP P W AL ACR +K+ ++ +IA
Sbjct: 384 YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIA 435
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 42/248 (16%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
TH+ L H R +HA + + + + + T L+ + ++D A+ +F
Sbjct: 255 THLQVLDHG-------RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKE 307
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N++ ++ I GLA N + + F M R V+PN +T+ V K + + L+ GR
Sbjct: 308 RNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRK- 366
Query: 152 HCLIVKSGVEYDAFVRVH-----------LADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+D+ V+ + DMY + G+ + A + P + V
Sbjct: 367 ---------HFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMR---PHVG 414
Query: 201 LWNVLINGC-----SKIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
W+ L++ C ++G + RK VEL KN ++V L + + + + L
Sbjct: 415 AWSALLHACRMYKNKELGEIAQRKIVEL----EDKNDGAYVLLSNIYADYKNWESVSSLR 470
Query: 254 EQMPEKGV 261
+ M KGV
Sbjct: 471 QTMKAKGV 478
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/461 (32%), Positives = 248/461 (53%), Gaps = 12/461 (2%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-- 89
+H+ L + S RQ+HAQ++L L +R LI+S+S S YA +IFD
Sbjct: 9 SHLTGLAQRALSPAAARQLHAQLLLRGLPLPARAAVTLIASSS---SPQYARAIFDSVPA 65
Query: 90 TPKNLHIFNVLIRGLAENSH---FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
N++++ + A+++ F+FMLR RPN T V KS++ L
Sbjct: 66 ASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAH 125
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+H +VK+G+ V L D Y L + + A +VFDE P N V++ N ++
Sbjct: 126 QVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSN----VVVGNAMV 181
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+G K G + A ++F M +++ SW +L+ G++R+GD A +LF++MP++ V SW
Sbjct: 182 SGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNM 241
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI+ S+ G ++A+F QM R + T+ +SACA++G L +V+ +
Sbjct: 242 MISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGC 301
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ + +LVDM+AKCG A L+F E KD++++ M+ LA HG + A++ F+
Sbjct: 302 VEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFE 361
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M+ G +PD FL +L+AC ++G V +F++M Y IE S H+ +V+L RV
Sbjct: 362 QMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRV 421
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
G +++A F+ MP P IWGAL ACR H + + ++A
Sbjct: 422 GLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVA 462
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 270/547 (49%), Gaps = 73/547 (13%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRI 65
+++++P T + + + + E ++S++ S QL+QI AQ++ + N FA+SR+
Sbjct: 36 SSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRL 95
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLS 124
+ S K +DY I N+ +N IRG E+ + + ML +
Sbjct: 96 VA--FCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGT 153
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE----------------------Y 162
++P+ TYP + K LG G+ ++K G E Y
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 163 DAFVRVHLADMY---------VQLGKTRGAFKVFDE-TPEKNKSE--------------- 197
D F + + D+ V+ G A K++ E EK +
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 198 -------------------SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
++ L N L++ K G L A LF M +K + SW +++
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVL 333
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ R G L A E+ ++PEK VV W A+I+G Q + ++ALA+F +M + + T
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+V+ LSAC+++GAL+ G+ +H+YI + + A+GTALVDMYAKCGNI A VF E
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+++ LTWTA+I GLA+HG + A+ YF KM++ G PD FL +L+AC + G V+
Sbjct: 454 QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRK 513
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F M + + P +KH++ +V+LL R G +++A + MP D + GALF ACR +
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVY 573
Query: 479 KDTKIAK 485
+ +I +
Sbjct: 574 GNVQIGE 580
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/482 (33%), Positives = 245/482 (50%), Gaps = 82/482 (17%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ YA S+F+ N I+N +IRG A +S S ++ +V M+ L + PN T+PF+ KS
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ---------------------- 176
A + G+ +H ++K G + D +V L MYVQ
Sbjct: 74 CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133
Query: 177 ---------LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
G R A K+FDE P K+ V+ WN +I+G ++ G ++A+ELF M K
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKD----VVSWNAMISGYAETGCYKEALELFEEMMK 189
Query: 228 KNVA--------------------------SWV-------------SLIDGFMRKGDLKK 248
NV SWV +LID + + G+++
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF+ + K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309
Query: 309 VGALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
+GA++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF K L
Sbjct: 310 LGAIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W AMI+G A+HGR + + F +M G EPD F+ +L+AC +SG + L + F SM
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
DY + P ++H+ +++LL G +A IN M PD VIW +L AC+ H + ++
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVEL 486
Query: 484 AK 485
A+
Sbjct: 487 AE 488
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 50/385 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + I A +FD K++ +N +I G AE ++ + F M++++VR
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ TY V + A + LGR +H + G + + + L D+Y + G+ A +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 254 FQGLSYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F M K + SW
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 369
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A+ + +F +M G+ +D T V LSAC+ G L+ G + ++
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT-Q 428
Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ G EA ++ E D + W +++ +HG E A
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488
Query: 383 QYFKKMMYSGTE-PDGTVFLAILTA 406
+ + ++ E P + L+ + A
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYA 513
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 131/306 (42%), Gaps = 19/306 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K + +P + T ++S S S + RQ+H+ + H ++ +I LI S
Sbjct: 188 MKMNVRPDES-TYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGE 246
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F + K++ +N LI G + ++ + F MLR PN +T V +
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VF+ K+ S
Sbjct: 307 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G + +LF M K + ++V L+ G L +
Sbjct: 367 S----WNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHI 422
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M + ++ + MI+ +G ++A M M + + S L AC
Sbjct: 423 FRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACK 479
Query: 308 KVGALE 313
G +E
Sbjct: 480 MHGNVE 485
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 253/448 (56%), Gaps = 12/448 (2%)
Query: 54 IILHNLFASSRITTQLISSASLH--KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
++++ L ++ + +LI SASL ++ YA +FD ++ I N ++RG A++ +
Sbjct: 1 MVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPE 60
Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
+S + M + V P+R T+ FV K+ + L S G H +V+ G + +V+ L
Sbjct: 61 KTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALI 120
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
+ G A ++FD++ + +K + W+ + +G +K G + +A+ LF MP K+
Sbjct: 121 LFHANCGDLGIASELFDDSAKAHK----VAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQV 176
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+W +I G ++ ++ A ELF++ EK VV+W AMI+G+ G ++AL +F +M DAG
Sbjct: 177 AWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAG 236
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI-----SCNDFGLKGAIGTALVDMYAKCGN 346
+ T++S LSACA +G LE G R+H YI + + I AL+DMYAKCG+
Sbjct: 237 EHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGS 296
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A VF K++DL TW +I GLA+H E +I+ F++M P+ F+ ++ A
Sbjct: 297 IDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILA 355
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +SG+V +F MR Y IEP++KH+ +V++L R GQ+++A F+ M P+ +
Sbjct: 356 CSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAI 415
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSL 494
+W L AC+ + + ++ K A + S+
Sbjct: 416 VWRTLLGACKIYGNVELGKYANEKLLSM 443
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 257/517 (49%), Gaps = 65/517 (12%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSAS 74
+K +KP I+S + + S +L Q+H +I + N+ SR+ ++
Sbjct: 2 MKKHYKP--------ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLI-DFCTTCP 52
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
++ YA S+F+ +++I+N +IRG + + + + + MLR P+ T+P+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V K+ + L + G +H +VK+G E + +V L MY+ G+ +VF++ P+ N
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWN 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------------- 232
V+ W LI+G A+E F M V +
Sbjct: 173 ----VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228
Query: 233 W-------------------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
W SLID + + GDL+ A LF+ MPE+ +VSW ++
Sbjct: 229 WFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSI 288
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G+SQNG+AE+AL MF MLD G+ + T +S + A G + G +H Y+S F
Sbjct: 289 ITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF 348
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
AI ALV+MYAK G+ E+A F + ++KD + WT +I GLA HG +A+ F++
Sbjct: 349 VKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQR 408
Query: 388 MMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M G PDG +L +L AC + G V+ +F MR + +EP+V+H+ +V++LSR
Sbjct: 409 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 468
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
G+ ++A + MP P+ IWGAL C H++ ++
Sbjct: 469 GRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLEL 505
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 173/425 (40%), Gaps = 63/425 (14%)
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKTRGAFKV 186
P +S+ SL+ L + LH L++KS V + L D + L R F+
Sbjct: 8 PILSQLENCRSLVELNQ-LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------------- 231
D SV +WN +I G S KA+ + M +K +
Sbjct: 67 ID-------CPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119
Query: 232 ----SWVSLIDGFMRK--------------------GDLKKAGELFEQMPEKGVVSWTAM 267
+ S + GF+ K G++ +FE +P+ VV+W ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+GF N A+ F +M GV+AN+ +V L AC + + G H ++ F
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGF 239
Query: 328 --------GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
G + T+L+DMYAKCG++ A +F E+ L++W ++I G + +G E
Sbjct: 240 DPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAE 299
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ F M+ G PD FL+++ A G +L + + F++ + +
Sbjct: 300 EALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAI-VCAL 358
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
VN+ ++ G + A + E D + W + +H A Q + P
Sbjct: 359 VNMYAKTGDAESAKKAFEDL-EKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 417
Query: 500 QAMSY 504
++Y
Sbjct: 418 DGITY 422
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 164/375 (43%), Gaps = 32/375 (8%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHA--QIILHNLFA 61
NR + AI ++S+ +N ET ++ L+ + K + + H Q + + +
Sbjct: 187 NRFSDAIEAFREMQSNGVKAN---ETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYF 243
Query: 62 SSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
S++ +I + SL + A +FD + L +N +I G ++N + +
Sbjct: 244 QSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALC 303
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
F+ ML L + P+++T+ V ++ LG+ +H + K+G DA + L +MY
Sbjct: 304 MFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYA 363
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
+ G A K F++ +K+ + W V+I G + G+ +A+ +F M +K A
Sbjct: 364 KTGDAESAKKAFEDLEKKD----TIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 419
Query: 232 -SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFF 285
+++ ++ G +++ F +M E V + M++ S+ G E+A +
Sbjct: 420 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVK 479
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M V+ N + L+ C LE R+ + ++ + L I L ++YAK G
Sbjct: 480 TM---PVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPE-ELGSGIYVLLSNIYAKAG 535
Query: 346 NIEAASLVFGETKEK 360
L+ K K
Sbjct: 536 RWADVKLIRESMKSK 550
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/530 (29%), Positives = 269/530 (50%), Gaps = 71/530 (13%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALS 84
+ +T+ I + + S QL+QI +QI L +L++ + S ++ YA
Sbjct: 139 SKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEK 198
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
IF++ +L ++NV+++ A+ + + F + + P+ TYPFV K++ L
Sbjct: 199 IFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRD 258
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADM------------------------------- 173
+ G + IVK+G++ D +V L DM
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318
Query: 174 YVQLGKTRGAFKVF-------DETPEKNKSESVL-------------------------- 200
YV+ + A F +E P++ S L
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 378
Query: 201 --LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ N L++ +K G L A +F M KNV W S+I G++ GDL++A +LF++ P
Sbjct: 379 TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPV 438
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VV WTAMING+ Q + A+A+F +M V+ + FTVV+ L+ CA++GALE G +
Sbjct: 439 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWI 498
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ N + +GTAL++MY+KCG ++ + +F E ++KD +WT++I GLA++G+
Sbjct: 499 HGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKT 558
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A++ F +M G +PD F+ +L+AC + G V+ FF+SM+ + IEP V+H+
Sbjct: 559 SEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGC 618
Query: 439 VVNLLSRVGQVDKALNFINKMP-ETPDFVI--WGALFCACRTHKDTKIAK 485
V++LL R G +D+A I ++P E + V+ +GAL ACR H + + +
Sbjct: 619 VIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 668
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 22/221 (9%)
Query: 1 MKGHV-FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G+V F+ A+A ++ + T +++ + +Q + IH + + +
Sbjct: 448 INGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI 507
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ T LI S +D +L IF K+ + +I GLA N + F
Sbjct: 508 TMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSE 567
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH---------- 169
M R+ +P+ +T+ V + + L+ GR +++ +VH
Sbjct: 568 MERVGAKPDDITFIGVLSACSHGGLVEEGRRF----------FNSMKKVHRIEPKVEHYG 617
Query: 170 -LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+ D+ + G A ++ E P +N V L+ L++ C
Sbjct: 618 CVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSAC 658
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 270/547 (49%), Gaps = 73/547 (13%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRI 65
+++++P T + + + + E ++S++ S QL+QI AQ++ + N FA+SR+
Sbjct: 36 SSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRL 95
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLS 124
+ S K +DY I N+ +N IRG E+ + + ML +
Sbjct: 96 VA--FCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGT 153
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE----------------------Y 162
++P+ TYP + K LG G+ ++K G E Y
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 163 DAFVRVHLADMY---------VQLGKTRGAFKVFDE-TPEKNKSE--------------- 197
D F + + D+ V+ G A K++ E EK +
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 198 -------------------SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
++ L N L++ K G L A LF M +K + SW +++
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVL 333
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ R G L A E+ ++PEK VV W A+I+G Q + ++ALA+F +M + + T
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+V+ LSAC+++GAL+ G+ +H+YI + + A+GTALVDMYAKCGNI A VF E
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+++ LTWTA+I GLA+HG + A+ YF KM++ G PD FL +L+AC + G V+
Sbjct: 454 QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRK 513
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F M + + P +KH++ +V+LL R G +++A + MP D + GALF ACR +
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVY 573
Query: 479 KDTKIAK 485
+ +I +
Sbjct: 574 GNVQIGE 580
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/499 (30%), Positives = 255/499 (51%), Gaps = 44/499 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
SLI S L QI+A++++ L + +L++ AS + A +FD F ++
Sbjct: 80 SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVF 139
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
++N ++R + + F I + M V P+ ++P V K+ ++L L +GR +H I
Sbjct: 140 LWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQI 199
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ G E D FV+ L +Y + G+ A VF ++ +++ W +I+G ++ G
Sbjct: 200 FRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR----TIVSWTSIISGYAQNGQP 255
Query: 216 RKAVELFGMMPKKNV-ASWVSLIDGFMRKGDLK--------------------------- 247
+A+ +F M K NV W++L+ D++
Sbjct: 256 IEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315
Query: 248 -----KAGEL------FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
K G + F Q+ ++ W AMI+G+ +NG AE+A+ +F M +R +
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
TV S+++ACA++G+LE + YIS ++F + T+L+D YAKCG+++ A VF
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+KD++ W+AM+ G +HG+ ++I F M +G P+ F+ +LTAC SG V+
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ F MR DY IEP +H+ VV+LL R G +D+A NF+ MP P +WGAL AC+
Sbjct: 496 WDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACK 554
Query: 477 THKDTKIAKIALQSSCSLN 495
H+ + + A + SL+
Sbjct: 555 IHRHVTLGEYAAERLFSLD 573
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 130/307 (42%), Gaps = 30/307 (9%)
Query: 34 IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
++S++ + + L + IH +I L + L S + + A F+
Sbjct: 277 LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE 336
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+L +N +I G +N + + I F M ++RP+ +T + A + L L R
Sbjct: 337 NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARW 396
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+ I S D V L D Y + G A VFD P+K+ V++W+ ++ G
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKD----VVVWSAMMVGYG 452
Query: 211 KIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS--- 263
G R+++ LF M + V+ ++V L+ G +++ +LF +M + G+
Sbjct: 453 LHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQ 512
Query: 264 -WTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+ +++ + G ++A M ++ GV + GAL + ++H +
Sbjct: 513 HYACVVDLLGRAGHLDRAYNFVMNMPIEPGV--------------SVWGALLSACKIHRH 558
Query: 322 ISCNDFG 328
++ ++
Sbjct: 559 VTLGEYA 565
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 255/461 (55%), Gaps = 12/461 (2%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFTPKNLHIF 97
S+ + + L+QIH +++ + + + +L+ + AS + +DYA +FD + +L +
Sbjct: 6 SARNPRSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMH 65
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
NV++RG A ++ + FV R+ ++P+ T+ ++ ++ A L G +H
Sbjct: 66 NVMVRGYAHSAAPAA---AFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGA 122
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+VK G DAFVR L +M+ + G A + DE E++ V+ + +I G + G
Sbjct: 123 VVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERD----VVARSAVIAGHAAKGE 178
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
L A +LF K++ W ++ + + G+++KA L ++ PEK VVSW +I G++
Sbjct: 179 LDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAK 238
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G ++AL + +M G+ ++ T+VS LS CA +G+L G +H+ + G
Sbjct: 239 GLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPG 298
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
ALV MYAKCG+++AA VF KE+D+ TW ++I GLA HG+ EQ++Q+F KM+ G
Sbjct: 299 NALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLC 358
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ FL +L AC ++G V+ +F M Y IEP+ +H++ +V++L R G +D+A
Sbjct: 359 PNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFA 418
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
++ M P VIW L ACR H D + K+A + +N
Sbjct: 419 IVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERLLKMN 459
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 258/468 (55%), Gaps = 19/468 (4%)
Query: 47 LRQIHAQIILHNLFASSR-------ITT--QLISSASLHKSIDYALSIFDHFTPKNLHIF 97
LRQIHA +I+ N F S+ +TT ++ A+ YA+ +F + ++
Sbjct: 17 LRQIHALMIV-NGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMW 75
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N IRG +++ ++ + M SV+P+ T+P V K+ L ++ G +H + +
Sbjct: 76 NTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFR 135
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
G + VR L + + G + A +FD++ + + V+ W+ LI G ++ G L
Sbjct: 136 LGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGD----VVAWSALIAGYAQRGDLSV 191
Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
A +LF MPK+++ SW +I + + G+++ A LF++ P K VVSW AM+ G+ +
Sbjct: 192 ARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLN 251
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTA 336
++AL +F +M + G ++ T++S LSACA +G + G +VH I N L +G A
Sbjct: 252 QEALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNA 309
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
LVDMYAKCGNI VF ++KD+++W ++I GLA HG E+++ F++M + PD
Sbjct: 310 LVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPD 369
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+ +L AC ++G V +F M+ Y IEP+++H VV++L+R G + +A +FI
Sbjct: 370 EITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFI 429
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
M P+ ++W +L AC+ H D ++AK A + L + + Q+ Y
Sbjct: 430 ASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQ--LLRMRVDQSGDY 475
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 232/448 (51%), Gaps = 42/448 (9%)
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLT 131
S+ ++ A +FD ++L +N LI G + + F M+ VRP+ +T
Sbjct: 171 SIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVT 230
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ L LGR LH + GV + L DMY+
Sbjct: 231 MIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYI---------------- 274
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
K G L A +F + + V SW ++I GF + G + A +
Sbjct: 275 -------------------KCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARK 315
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+F++MPE+ V W A++ G+ Q + ++AL++F +M +A V ++ T+V+ L+AC+++GA
Sbjct: 316 VFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGA 375
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G+ VH YI + A+GT+L+DMYAKCGNIE A +F E EK+ LTWTAMI G
Sbjct: 376 LEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICG 435
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA HG +AI++F+ M+ G +PD F+ +L+AC ++G VK FF M Y +E
Sbjct: 436 LANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLER 495
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
+KH++ +++LL R G +D+A +N MP PD V+WGA+F ACR + + + A
Sbjct: 496 KMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKL 555
Query: 492 CSLNLS-----IPQAMSYCQTFMQQKGD 514
++ S + A Y + M++K D
Sbjct: 556 VEIDPSDSGIYVLLANMYAEANMRKKAD 583
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 182/426 (42%), Gaps = 114/426 (26%)
Query: 97 FNVLIRGLA------ENSH--FQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSL 147
+N IR L+ + H + C+ + +LR + RP+ LT+PF+ K+ A L
Sbjct: 84 YNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGY 143
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +++ G++ D FV V+ A ++ + G A ++FD +
Sbjct: 144 GDAALAHVLRLGLDSDVFV-VNAATHFLSIRGPMEDARRLFDRS---------------- 186
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
P +++ SW +LI G++R+G+ +A ELF +M +
Sbjct: 187 -------------------PVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAE------- 220
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
DA VR ++ T+++A+S C ++ LE G R+H ++ +
Sbjct: 221 ----------------------DAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDG 258
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG---------- 376
+ AL+DMY KCG++E A VF + + +++WT MI G A G
Sbjct: 259 VSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFD 318
Query: 377 ---------------------RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ ++A+ F +M + PD + +LTAC G +++
Sbjct: 319 EMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEM 378
Query: 416 AL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ + + R + SV T ++++ ++ G ++KA++ ++PE + + W A+
Sbjct: 379 GMWVHRYIEKHRLVF----SVALGTSLIDMYAKCGNIEKAIHIFKEIPEK-NALTWTAMI 433
Query: 473 CACRTH 478
C H
Sbjct: 434 CGLANH 439
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ IT ++++ + + +H I H L S + T LI + +I+ A+ IF
Sbjct: 359 DEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIF 418
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KN + +I GLA + H I HF M+ L +P+ +T+ V + L+
Sbjct: 419 KEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVK 478
Query: 147 LGRGLHCLI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
GR L+ K +E + D+ + G A ++ + P + + ++W +
Sbjct: 479 EGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDA---VVWGAI 535
Query: 206 INGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
C G + + A++L + P + +V L + + KKA ++ M GV
Sbjct: 536 FFACRMQGNISLGEKAAMKLVEIDPSDS-GIYVLLANMYAEANMRKKADKVRAMMRHLGV 594
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 160/513 (31%), Positives = 258/513 (50%), Gaps = 75/513 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
+ ++++HA I+ L+ ++++ S A L + +A +FD ++N+LIRG
Sbjct: 2 EAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRG 61
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
LA++ I+ + + P+ LT+PF+ K+ A ++ L+ G +H I K G+ D
Sbjct: 62 LAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSD 121
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
FV L +Y G A VFDE K+ V+ WN LI G S+ + + LF
Sbjct: 122 IFVSNSLIHLYAACGNLCYARSVFDEMVVKD----VVSWNSLICGYSQCNRFKDILALFK 177
Query: 224 MMPKKNV----------------------ASWV-----------------SLIDGFMRKG 244
+M + V A ++ +L+D F R+G
Sbjct: 178 LMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRG 237
Query: 245 DLKKAG-------------------------------ELFEQMPEKGVVSWTAMINGFSQ 273
L+ A ++F+Q+P+K ++SW++MI+G+SQ
Sbjct: 238 QLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQ 297
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
AL +F QM A V+ + + S +S+CA +GAL+ G VH Y+ N+ +
Sbjct: 298 ANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIM 357
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+L+DMY KCG+ + A VF E KEKD L+W ++I GLA +G ++++ F+ M+ G
Sbjct: 358 ENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGF 417
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+G FL +L AC + V+ L+ F+SM+ Y +EP +KH+ VV+LL R GQ++KAL
Sbjct: 418 RPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKAL 477
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
FI +MP PD V+W L +C TH D IA+I
Sbjct: 478 RFITEMPIDPDPVVWRILLGSCNTHGDVAIAEI 510
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 221/394 (56%), Gaps = 22/394 (5%)
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
HF+ RL+V + KS LL + H ++ + G+++ + L Y
Sbjct: 26 HFISTNRLAV--------LIDKSKTISHLLQI----HAVLFRHGLDHHPILNFKLQRSYA 73
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
LG+ + +F T ++ SV W +I+G + G + A +LF MP+K++ S +
Sbjct: 74 SLGRLDYSVALFGRT----QNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTA 129
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
++ + + G+L A LF+ M E+ V W MI+G++QNG +AL +F +ML A + N
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 189
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ TV+S LSAC ++GALE+G VH+YI N +GTALVDMY+KCG++E A LVF
Sbjct: 190 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 249
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ +KD++ W +MI G A+HG ++A+Q FK M G P F+ IL+AC +SG V
Sbjct: 250 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 309
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ F+ M+ +Y IEP ++H+ +VNLL R G V++A + M PD V+WG L AC
Sbjct: 310 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 369
Query: 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
R H KIAL + L + Q ++ T++
Sbjct: 370 RLH-----GKIALGEKI-VELLVDQNLANSGTYI 397
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 157/363 (43%), Gaps = 30/363 (8%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I+ + LI S + L QIHA + H L + +L S + +DY++++F
Sbjct: 28 ISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGR 87
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
++ + +I G A S F M KS+ SL+ +
Sbjct: 88 TQNPSVFFWTAIIHGHALRGDVVSAQQLFDTM--------------PEKSLVSLTAMLTC 133
Query: 149 RGLHCLIVKSGVEYDAFVRVH------LADMYVQLGKTRGAFKVFDET-PEKNKSESVLL 201
H + + V +D + D Y Q G A +F K K V +
Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+VL + C ++G L + + NV +L+D + + G L+ A +F+++
Sbjct: 194 LSVL-SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 252
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+K VV+W +MI G++ +G +++AL +F M G+ + T + LSAC G + G
Sbjct: 253 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 312
Query: 318 VHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAI 374
+ N + +++G++ I +V++ + G++E A LV E D + W ++ +
Sbjct: 313 IFNKMK-DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 371
Query: 375 HGR 377
HG+
Sbjct: 372 HGK 374
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 17/294 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +++ + H +D A +FD ++ +NV+I G +N + F ML+ +
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN +T V + L L GR +H I +G++++ V L DMY + G A V
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMR 242
FD+ +K+ V+ WN +I G + G+ ++A++LF M + + +++ ++
Sbjct: 248 FDKIDDKD----VVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 303
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + + ++F +M E + + M+N + G E+A + M + +
Sbjct: 304 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM---NIEPDPV 360
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ L AC G + G ++ + + G L ++YA GN + +
Sbjct: 361 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY-ILLSNIYAAVGNWDGVA 413
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 8/247 (3%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K+ KP N +T ++S + + R +H+ I + + + + T L+ S S
Sbjct: 182 LKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 240
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +FD K++ +N +I G A + Q + F M R+ + P +T+ + +
Sbjct: 241 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 300
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ G + K EY ++ H M LG+ + ++ N
Sbjct: 301 CGHSGWVTEGWD---IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 357
Query: 198 SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+LW L+ C KI K VEL N +++ L + + G+ L
Sbjct: 358 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 417
Query: 255 QMPEKGV 261
M + GV
Sbjct: 418 MMKDSGV 424
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 265/498 (53%), Gaps = 54/498 (10%)
Query: 1 MKGHVFNRLTTAIAPTTNIKSSHKPSN--NITETHIISLIHSSNSTKQLRQIHAQIIL-- 56
MK N+L++A+ T N K + KP+ +I ETH+ H+ ++ KQ +I +Q+IL
Sbjct: 1 MKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHL----HNCHNLKQFNRILSQMILTG 56
Query: 57 --HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
+ FA+SR+ S+ S +DY+L IFD N ++N ++R +++ + +
Sbjct: 57 FISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKAL 114
Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
+ M++ +V P+ TYP V ++ A L G+ +H ++K G + +D+Y
Sbjct: 115 LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD---------SDVY 165
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
VQ N LIN + G +R A +LF P + SW
Sbjct: 166 VQ--------------------------NTLINMYAVCGNMRDARKLFDESPVLDSVSWN 199
Query: 235 SLIDGFMRKGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
S++ G+++KGD+ + E LF +M EK +VSW+A+I+G+ QNG E+AL MF +M G
Sbjct: 200 SILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANG 259
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI---SCNDF-GLKGAIGTALVDMYAKCGNI 347
+R ++ VVS LSACA + ++ G +H + + L+ A+ DMY KCG +
Sbjct: 260 MRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCV 319
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A VF +EK + +W A+I GLA++G E+++ F +M +G P+ F+ +L AC
Sbjct: 320 ENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGAC 379
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G V F SM + IEP+VKH+ +V+LL R G +++A I MP PD
Sbjct: 380 RHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVAT 439
Query: 468 WGALFCACRTHKDTKIAK 485
WGAL AC+ H DT++ +
Sbjct: 440 WGALLGACKKHGDTEMGE 457
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 242/477 (50%), Gaps = 37/477 (7%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
STK+ QIH Q+I+ L + + + S S+ +A+S+F+ + I N ++
Sbjct: 71 STKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIM 130
Query: 102 RGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
R N + + ++ M+R V PN T+P + K + + G +H I+K G
Sbjct: 131 RTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGF 190
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E D FVR L MY G+ A +F E ++ WN +I+G K G + A E
Sbjct: 191 ELDLFVRNSLIHMYSVCGRIGDARAMF----EVCSISDLVTWNSMIDGYVKNGEIGAARE 246
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
LF MP++++ SW S+I G++ GD+ A +LF +MP + +VSW MI+G++Q E A
Sbjct: 247 LFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIA 306
Query: 281 LAMF------------------------------FQMLDAGVRANDFTVVSALSACAKVG 310
+F F + N+ T+VS L+ACA +G
Sbjct: 307 CELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLG 366
Query: 311 ALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
L+ G +H+YI N + TAL+ MYAKCG ++ A VF + + +++W +MI
Sbjct: 367 RLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMI 426
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G +HG+ ++A++ F M G P+ F+ +L+AC +SG + +FD MR Y I
Sbjct: 427 MGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKI 486
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
EP V+H+ +V+LL R G + I KMP +WGAL ACRTH ++++A+I
Sbjct: 487 EPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEI 543
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 169/548 (30%), Positives = 268/548 (48%), Gaps = 91/548 (16%)
Query: 26 SNNITETHIIS-------LIHSSNSTKQ---------LRQIHAQIILHNLFASSRITTQL 69
SN +TE S L+ NS K ++++HA I+ L+ +++
Sbjct: 432 SNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKV 491
Query: 70 ISS-ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+ S A L + +A +FD ++N+LIRGLA++ I+ + + P+
Sbjct: 492 LRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPD 551
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
LT+PF+ K+ A ++ L+ G +H I K G+ D FV L +Y G A VFD
Sbjct: 552 NLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD 611
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV------------------ 230
E K+ V+ WN LI G S+ + + LF +M + V
Sbjct: 612 EMVVKD----VVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLG 667
Query: 231 ----ASWV-----------------SLIDGFMRKGDLKKAG------------------- 250
A ++ +L+D F R+G L+ A
Sbjct: 668 DYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIA 727
Query: 251 ------------ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
++F+Q+P+K ++SW++MI+G+SQ AL +F QM A V+ +
Sbjct: 728 AYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIV 787
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ S +S+CA +GAL+ G VH Y+ N+ + +L+DMY KCG+ + A VF E K
Sbjct: 788 IASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK 847
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EKD L+W ++I GLA +G ++++ F+ M+ G P+G FL +L AC + V+ L+
Sbjct: 848 EKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD 907
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F+SM+ Y +EP +KH+ VV+LL R GQ++KAL FI +MP PD V+W L +C TH
Sbjct: 908 HFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTH 967
Query: 479 KDTKIAKI 486
D IA+I
Sbjct: 968 GDVAIAEI 975
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 218/472 (46%), Gaps = 68/472 (14%)
Query: 25 PSNNITETHIISLI-HSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
P + I +++L+ + +QL QIH+Q+I H +F
Sbjct: 15 PVDAIAARRLVALLLEHQDRRRQLLQIHSQLIAHQVFDRRP------------------- 55
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
TP ++ L++ + H Q + F R + + F K+ A L
Sbjct: 56 ------TP-----WHALLKAYSHGPHPQDALQLFRHA-RWHAADDTYAFTFALKACAGLG 103
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
LH L+V+ G E+ +V L ++Y+ G + F+E
Sbjct: 104 WPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEE-------------- 149
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
MP KN SW +I GF G+++ A LFE+MP + VVS
Sbjct: 150 ---------------------MPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVS 188
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W+ MI+G+++ +A+A+F +M+ G+ ++ TV++ + A + VG + G +H Y
Sbjct: 189 WSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCE 248
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAI 382
+G +L+D+YAK G+I+ + VF E ++L++WT++I G A+HG +A+
Sbjct: 249 KEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAV 308
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M +G P+ FL++L AC + G V+ + FF SM ++Y I P VKH ++++
Sbjct: 309 ELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDM 368
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
L R G++ +A I P + +W L C + + ++ + ++ +L
Sbjct: 369 LGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILAL 420
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 163/537 (30%), Positives = 269/537 (50%), Gaps = 74/537 (13%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLHK 77
+S++P N+ T I L+ S + + QIH+++I + +TT++I SS+S
Sbjct: 6 TSNQPWNSTHPTLI--LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKP 63
Query: 78 SIDYALSIF--DHFTPK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
+++A +F HF K N ++N +I+ + + F ML V ++
Sbjct: 64 LVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKF 123
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA------------------- 171
++ V K+ + L L+ G +H L+ + + D F++ L
Sbjct: 124 SFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM 183
Query: 172 ------------DMYVQLGKTRGAFKVFDETPEKNKS----------------------- 196
D YV+ G + A ++FD P + K+
Sbjct: 184 MKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWE 243
Query: 197 -------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
++ WN +I+GC K G + A LF MPK++V SW +++DG+ + G++ A
Sbjct: 244 LFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIA 303
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAK 308
LF++MPE+ V+S AM+ G+ QNG +AL F ML + ++ T++ LSA A+
Sbjct: 304 RGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQ 363
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G + GV +H YI N F L +G AL+DMYAKCG+I+ A VF + +K + W A+
Sbjct: 364 LGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAI 423
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLAIHG E A + F +M +PD F+ +L AC ++G VK L F+ MR +
Sbjct: 424 IGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHK 483
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+EP ++H+ +V++L R G V++A F+ KMP P+ V+W L ACR H++ I +
Sbjct: 484 VEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGE 540
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 155/504 (30%), Positives = 252/504 (50%), Gaps = 42/504 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS--RITTQLISS-ASLHKSIDY 81
P + ++S + + S Q HA ++ A+S R++ L+ + AS+ +
Sbjct: 4 PCPAVALPTLLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAAL 63
Query: 82 ALSIFDHF---TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
A +F ++ +N IR L + ++ + +F M R VRP+ T+P V K+
Sbjct: 64 ADVVFARLPLPAARDPFAWNTAIR-LHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKA 122
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
G +H V+ G+ D F L Y ++ R KVFDE S
Sbjct: 123 CGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEA--GGVSRD 180
Query: 199 VLLWNVLING---CSKIGY------------------------------LRKAVELFGMM 225
++ WN ++ G C ++G + +A ELF M
Sbjct: 181 LVSWNSMVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQM 240
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
P++++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G GEA++AL F
Sbjct: 241 PERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQ 300
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
ML G+R + V A+SACA++GALE G +H+Y+ + TAL+DMY KCG
Sbjct: 301 SMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCG 360
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++ A L+F E+ ++TW MI GL HG A+ F +M D L +LT
Sbjct: 361 CLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLT 420
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G V L F M+ D+ I+P V+H+ +V+LL R G++D+A + I MP P
Sbjct: 421 ACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTP 480
Query: 466 VIWGALFCACRTHKDTKIAKIALQ 489
+WG+L ACR+H ++A+++++
Sbjct: 481 ELWGSLLAACRSHSCVELAELSVE 504
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/494 (30%), Positives = 252/494 (51%), Gaps = 44/494 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
S +Q R++HA I+ + + + L+S + S+ A +FD +N+ + +I
Sbjct: 61 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
+ + M +P+++T+ + + + LL LG+ +H IV++G+E
Sbjct: 121 EAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE 180
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+ V L MY + G A +FD PEKN V+ W +LI G ++ G + A+EL
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKN----VVTWTLLIAGYAQQGQVDVALEL 236
Query: 222 FGMMPKKNVAS-------------------------------------WV--SLIDGFMR 242
M + VA WV SLI + +
Sbjct: 237 LETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCK 296
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G L++A +LF +P + VV+WTAM+ G++Q G ++A+ +F +M G++ + T S
Sbjct: 297 CGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSV 356
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L++C+ L+ G R+H + + L + +ALV MYAKCG+++ ASLVF + E+++
Sbjct: 357 LTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416
Query: 363 LTWTAMIWGL-AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+ WTA+I G A HGR +A++YF +M G +PD F ++L+AC + G V+ F
Sbjct: 417 VAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFR 476
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM DY I+P V+H++ V+LL R G +++A N I MP P +WGAL ACR H D
Sbjct: 477 SMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDV 536
Query: 482 KIAKIALQSSCSLN 495
+ + A ++ L+
Sbjct: 537 ERGERAAENVLKLD 550
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 179/381 (46%), Gaps = 51/381 (13%)
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A L L GR +H I+KSG++ + ++ L MY + G A +VFD ++N
Sbjct: 55 QECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIV 114
Query: 197 ESVLLWNVLINGCSKIGYLR--KAVELFGMMPKKNVASWVSLIDGFM------------- 241
+ + G + + + ++L G P K ++VSL++ F
Sbjct: 115 SWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK--VTFVSLLNAFTNPELLQLGQKVHM 172
Query: 242 ----------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ GD+ KA +F+++PEK VV+WT +I G++Q G+ +
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL + M A V N T S L C ALE G +VH YI + +G + + +L+
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG +E A +F + +D++TWTAM+ G A G +++AI F++M G +PD
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352
Query: 400 FLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
F ++LT+C ++ + D +++ + +V++ ++ G +D A
Sbjct: 353 FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ------SALVSMYAKCGSMDDASL 406
Query: 455 FINKMPETPDFVIWGALFCAC 475
N+M E + V W A+ C
Sbjct: 407 VFNQMSER-NVVAWTAIITGC 426
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 175/393 (44%), Gaps = 48/393 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++H +I+ L R+ T L+ + I A IFD KN+ + +LI G A+
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ M + V PN++T+ + + + + L G+ +H I++SG + +V
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L MY + G A K+F + P ++ V+ W ++ G +++G+ +A+ LF
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRD----VVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343
Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
G+ P K +V +L+ + + G +
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDD 403
Query: 249 AGELFEQMPEKGVVSWTAMING-FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A +F QM E+ VV+WTA+I G +Q+G +AL F QM G++ + T S LSAC
Sbjct: 404 ASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
VG +E G R H D+G+K + + VD+ + G++ EA +++
Sbjct: 464 HVGLVEEG-RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSV 522
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
W A++ +H E+ + + ++ + DG
Sbjct: 523 WGALLSACRVHSDVERGERAAENVLKLDPDDDG 555
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 157/374 (41%), Gaps = 18/374 (4%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
++ A+ ++ + N IT I+ + + + +++H II +
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
LI+ ++ A +F +++ + ++ G A+ I+ F M + ++
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+++T+ V S +S + L G+ +H +V +G D +++ L MY + G A V
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLV 407
Query: 187 FDETPEKNKSESVLLWNVLING-CSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFM 241
F++ E+N V+ W +I G C++ G R+A+E F M K+ + ++ S++
Sbjct: 408 FNQMSERN----VVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463
Query: 242 RKGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
G +++ + F M + V ++ ++ + G E+A + M
Sbjct: 464 HVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSM---PFIPGP 520
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
+ LSAC +E G R + D GA AL +YA G E A V
Sbjct: 521 SVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAY-VALSSIYAAAGRYEDAEKVRQV 579
Query: 357 TKEKDLLTWTAMIW 370
+++D++ W
Sbjct: 580 MEKRDVVKEPGQSW 593
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 231/439 (52%), Gaps = 46/439 (10%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
S ASL + +DY++++F ++ + +I G A + ++ + ML V PN
Sbjct: 18 SYASLGR-LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAF 76
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+ S+ L + G+ LH VK G + D +VR L D+Y + G A ++FD
Sbjct: 77 TF----SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-- 130
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
MP+K++ S +++ + + G+L A
Sbjct: 131 ---------------------------------TMPEKSLVSLTAMLTCYAKHGELDAAR 157
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF+ M E+ V W MI+G++QNG +AL +F +ML A + N+ TV+S LSAC ++G
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
ALE+G VH+YI N +GTALVDMY+KCG++E A LVF + +KD++ W +MI
Sbjct: 218 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 277
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G A+ G ++A+Q FK M G P F+ IL+AC +SG V + F+ M+ +Y IE
Sbjct: 278 GYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 337
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +VNLL R G V++A + M PD V+WG L ACR H KIAL
Sbjct: 338 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLH-----GKIALGE 392
Query: 491 SCSLNLSIPQAMSYCQTFM 509
+ L + Q ++ T++
Sbjct: 393 KI-VELLVDQNLANSGTYI 410
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 18/312 (5%)
Query: 50 IHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+ AQ + + S ++ T +++ + H +D A +FD ++ +NV+I G +N
Sbjct: 123 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 182
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F ML+ +PN +T V + L L GR +H I +G++++ V
Sbjct: 183 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 242
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L DMY + G A VFD+ +K+ V+ WN +I G + G+ ++A++LF M +
Sbjct: 243 ALVDMYSKCGSLEDARLVFDKIDDKD----VVAWNSMIVGYAMXGFSQEALQLFKSMCRM 298
Query: 229 NV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
+ +++ ++ G + + ++F +M E + + M+N + G E+
Sbjct: 299 GLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQ 358
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
A + M + + + L AC G + G ++ + + G L +
Sbjct: 359 AYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY-ILLSN 414
Query: 340 MYAKCGNIEAAS 351
+YA GN + +
Sbjct: 415 IYAAVGNWDGVA 426
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 137/305 (44%), Gaps = 6/305 (1%)
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
E K + + + L + +G L +V LFG +V W ++I G +G ++A
Sbjct: 2 EDKKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN 61
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+ QM +GV + + E A+ Q + G ++ + L A+ G
Sbjct: 62 FYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ + ++ + + TA++ YAK G ++AA ++F +E+D + W MI G
Sbjct: 122 VVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 177
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
+G +A+ F++M+ + +P+ L++L+AC G ++ + S + I+
Sbjct: 178 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQF 236
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
+V T +V++ S+ G ++ A +K+ + D V W ++ ++ A +S
Sbjct: 237 NVHVGTALVDMYSKCGSLEDARLVFDKI-DDKDVVAWNSMIVGYAMXGFSQEALQLFKSM 295
Query: 492 CSLNL 496
C + L
Sbjct: 296 CRMGL 300
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K+ KP N +T ++S + + R +H+ I + + + + T L+ S S
Sbjct: 195 LKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +FD K++ +N +I G A Q + F M R+ + P +T+ + +
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ G + K EY ++ H M LG+ + ++ N
Sbjct: 314 CGHSGWVTEGWD---IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 370
Query: 198 SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+LW L+ C KI K VEL N +++ L + + G+ L
Sbjct: 371 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 430
Query: 255 QMPEKGV 261
M + GV
Sbjct: 431 MMKDSGV 437
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 221/388 (56%), Gaps = 36/388 (9%)
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV---RVHL---------------- 170
+TYPFV K+ S+ G +H VKSG E D+++ +HL
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVH-THVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59
Query: 171 ------------ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
D YV+ G+ A VFD ++ V+ WN +ING + +G + +A
Sbjct: 60 CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRD----VISWNTMINGYAIVGKIDEA 115
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
LF MP++N+ S S++ GF++ G+++ A LF +MP + VVSW +M+ ++Q G+
Sbjct: 116 KRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 175
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+ALA+F QM GV+ ++ TVVS LSACA +GAL+ G+ +H YI+ N + +GTALV
Sbjct: 176 EALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 235
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG I A+ VF + KD+L W +I G+AI G ++A Q FK+M +G EP+
Sbjct: 236 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDI 295
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+A+L+AC ++G V D M Y IEP V+H+ V++LL+R G +++A+ I
Sbjct: 296 TFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGT 355
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKI 486
MP P+ GAL CR H + ++ ++
Sbjct: 356 MPMEPNPCALGALLGGCRIHGNFELGEM 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 123/272 (45%), Gaps = 20/272 (7%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+++ A +F +++ +N ++ A+ ++ F M + V+P+ T +
Sbjct: 142 NVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLS 201
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A L L G LH I + +E ++ V L DMY + GK A +VF+ +S+
Sbjct: 202 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM----ESK 257
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
VL WN +I G + +G++++A +LF M + V ++V+++ G + + +L
Sbjct: 258 DVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLL 317
Query: 254 EQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ M E V + +I+ ++ G E+A+ + M + N + + L C
Sbjct: 318 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNPCALGALLGGCRI 374
Query: 309 VGALE----AGVRVHNYISCNDFGLKGAIGTA 336
G E G R+ N C LK AIG +
Sbjct: 375 HGNFELGEMVGKRLINLQPCQSGRLKSAIGXS 406
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 258/509 (50%), Gaps = 47/509 (9%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS + + ++S + + S Q HA ++ A+S + + +L + + +
Sbjct: 3 PSPPLALSFLLSRLRACTSASHALQCHALLLTSGHLAASPLRLSNLLLLALASASAVSHA 62
Query: 85 --IFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+F P ++ +N LIR L + ++ +++F M R +V P+ T+P V K+
Sbjct: 63 DAVFARLLPGPASRDAFPWNTLIR-LHAPASPRNALAYFACMRRAAVEPDAYTFPAVLKA 121
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L G +H V++G++ D F R L Y ++G R KVFD + +
Sbjct: 122 CACGVL---GLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFD-----HGARD 173
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI--------------------- 237
++ WN ++ G G L A ELF MP ++ SW ++I
Sbjct: 174 LVSWNSMVAGYVACGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETP 233
Query: 238 -----------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
DG+ R+G + +A LFE+MPE+ V+SW+ +++G+ + GE +AL +F +
Sbjct: 234 NRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQR 293
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML G++ + V A +ACA++GALE G +H+Y+ + TAL+DMY KCG
Sbjct: 294 MLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGR 353
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
++ L+F +K ++TW MI GL H A++ F +M G D LA+LTA
Sbjct: 354 LDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTA 413
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C ++G + L F MR D+ ++P V+H+ +V+LL R G +D A + I MP P
Sbjct: 414 CTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPE 473
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLN 495
+WG+L ACR+H+ ++A+++++ SL
Sbjct: 474 LWGSLLAACRSHRCVELAELSVERLASLG 502
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 160/537 (29%), Positives = 270/537 (50%), Gaps = 72/537 (13%)
Query: 21 SSHKPSN-NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHK 77
SS SN + I + + S QL+QI +QI L +L++ + S
Sbjct: 86 SSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLG 145
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++ YA IF++ +L ++NV+++ A+ + + F + + P+ TYPFV K
Sbjct: 146 NLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLK 205
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------------------------ 173
++ L + G + IVK+G++ D +V L DM
Sbjct: 206 AIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVS 265
Query: 174 -------YVQLGKTRGAFKVF-------DETPEKNKSESVL------------------- 200
YV+ + A F +E P++ S L
Sbjct: 266 WNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV 325
Query: 201 ---------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
+ N L++ +K G L A +F M KNV W S+I G++ GDL++A +
Sbjct: 326 RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARD 385
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF++ P + VV WTAMING+ Q + A+A+F +M ++ + FTVV+ L+ CA++GA
Sbjct: 386 LFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGA 445
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G +H Y+ N + +GTAL++MY+KCG ++ + +F E ++KD +WT++I G
Sbjct: 446 LEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICG 505
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA++G+ +A++ F +M G +PD F+ +L+AC + G V+ FF+SM+ + IEP
Sbjct: 506 LAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 565
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMP-ETPDFVI--WGALFCACRTHKDTKIAK 485
V+H+ V++LL R G +D+A I ++P E + V+ +GAL ACR H + + +
Sbjct: 566 KVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 622
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 263/520 (50%), Gaps = 54/520 (10%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIIL------HNL 59
FN L + P+ N ++ +PS + +L+ + + L Q+HA+IIL H L
Sbjct: 65 FNALAS---PSRNAAAASRPS-----VALATLLGRCCTVRCLAQLHARIILLGLHNHHAL 116
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
A + S+ S AL+ H P L + N ++ LA ++ + ++ F
Sbjct: 117 LARFTTACDALECPSVAASFIAALTD-SHAAP--LRLRNAVLASLARHAPLHAALTEF-N 172
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG- 178
+LR + P+ ++P + ++ A +S L GR LH ++ GV D F+R L Y + G
Sbjct: 173 LLRQAALPDSFSFPCLLRACARVSCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGV 232
Query: 179 --KTRGAF----------------------------KVFDETPEKNKSESVLLWNVLING 208
R F +FD P++N V+ WNV+++G
Sbjct: 233 ADAARALFYQIDIPSEVSWTAIIVAYVNNGGIIDARALFDTMPQRN----VVHWNVMVDG 288
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
K G L A LF MP++ + SLI G+ + G+++ A LF+++ ++ V SW+AMI
Sbjct: 289 YVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMI 348
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++QNG +AL F + G+ ++ VV +SAC+++G + + +YI+
Sbjct: 349 SGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSID 408
Query: 329 LKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ A + LV+M AKCGN+E A+ +F +D+ ++ +++ G +HG ++A++ F +
Sbjct: 409 MNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSR 468
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G PD VF +LTAC ++G V+ FFD M+ Y + PS +H+ +VNLL R G
Sbjct: 469 MLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCG 528
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
++ A I MP P WGAL C+ H + ++ KIA
Sbjct: 529 MLEDAYWLIMSMPGKPHPGAWGALLGGCKLHCNIELGKIA 568
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 247/467 (52%), Gaps = 47/467 (10%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIF 86
I + IS++ + ++L+QIH Q++++ L ++ Q ++S +L+ ++ Y+ +
Sbjct: 7 IVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVL 66
Query: 87 DHFTPKNLHIFNVLIRGLAENS------HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
D+ L FN +IR +++S HF S I H L P+ T+ F+ ++ A
Sbjct: 67 DNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLA----PDNYTFTFLVRTSA 122
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L G +H VK G EYD V+ L MY +LG +VF E + ++
Sbjct: 123 QLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPD----LV 178
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
+++ C+K+G + GF RK LF++M K
Sbjct: 179 CQTAMVSACAKMGDV-----------------------GFARK--------LFDKMSHKD 207
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++W AMI+G+ Q G++ +AL++F M GV+ N+ ++VS LSAC+ +GAL+ G H
Sbjct: 208 PIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHA 267
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI N + +GTAL+DMYAKCGN+ A VF KEK++ TW++ I GLA++G E+
Sbjct: 268 YIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEK 327
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
++ F M +P+ F+++L C G V+ F+SM Y IEP ++H+ +V
Sbjct: 328 CLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMV 387
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L R G +D+ALNFIN MP P WGAL AC+ +++ ++ ++A
Sbjct: 388 DLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELA 434
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N ++ ++S + Q R HA I + L + + T LI + +++ A+ +F
Sbjct: 242 NEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVF 301
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KN++ ++ I GLA N + C+ F M + SV+PN +T+ V + + + L+
Sbjct: 302 WGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVE 361
Query: 147 LGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
GR + G+E + D+Y + G A + P + V W L
Sbjct: 362 EGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR---PHVGAWGAL 418
Query: 206 INGCS-----KIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+N C ++G L RK VEL KN ++V L + + D + + + M
Sbjct: 419 LNACKIYRNMEMGELASRKIVEL----EAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474
Query: 259 KGV 261
KGV
Sbjct: 475 KGV 477
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 256/476 (53%), Gaps = 23/476 (4%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL---HKSIDYALSIFDHF----- 89
+ + QL+Q+H QI + L T+L+++ + +S+DYA F+ F
Sbjct: 32 LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ L + N LIRG + + I +V ML L V PN T+PFV ++ G
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H +VK G+E D F++ L Y + G KVF+ E+N V+ W LI G
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERN----VVSWTSLICGY 207
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
++ ++AV LF M K + + +L+D +M+ G + A LF++ ++ +V + +++
Sbjct: 208 ARGDRPKEAVSLFFEMLNKVMVN--ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 265
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV-----GALEAGVRVHNYISC 324
+++ G A +ALA+ +ML G R + T++SA+SA A++ G + G VH YI
Sbjct: 266 NYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEK 325
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
N + TALVDM+A+CG+ ++A VF + E+D+ WTA I +A+ G E A
Sbjct: 326 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGL 385
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F +M+ G +PD +F+ +LTAC + GQV+ L+ F M D+ I P ++H+ +V+LL
Sbjct: 386 FNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLG 444
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500
R G + +A + I MP P+ V+WG+L ACR HK+ ++A A + +N PQ
Sbjct: 445 RAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAE---RINELAPQ 497
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/388 (21%), Positives = 159/388 (40%), Gaps = 99/388 (25%)
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK------TRGAFKVFD 188
+++S+ L+ + LHC I K+G++ L + ++ R AF++F
Sbjct: 28 LNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK 87
Query: 189 ETPEKNKS------------------ESVLLW---------------NVLINGCSKIGYL 215
E + + E++LL+ +++GC+KI
Sbjct: 88 EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147
Query: 216 RKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ +++ G + K + V LI + G + ++FE M E+ VVSWT++I G+
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
++ ++A+++FF+ML N + N
Sbjct: 208 ARGDRPKEAVSLFFEML-------------------------------NKVMVN------ 230
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
ALVDMY KCG I+AA +F E +++L+ + ++ A G +A+ +M+
Sbjct: 231 ----ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 286
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH---------HTVVVNL 442
G PD L+ ++A +L F+ + Y++ ++ +T +V++
Sbjct: 287 GPRPDRVTMLSAISA-----SAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDM 341
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGA 470
+R G A+ NKM E D W A
Sbjct: 342 FARCGDPQSAMQVFNKMTER-DVSAWTA 368
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 166/512 (32%), Positives = 253/512 (49%), Gaps = 82/512 (16%)
Query: 51 HAQII---LHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
HAQ++ LHN +A S++ + S + YA+S+F+ NL I+N ++RGLA
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHF-DGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+S S + +V M+ PN T+PF+ KS A GR +H ++K G E D +
Sbjct: 61 SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESV 199
L MY + G+ A KVFD + +++ V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180
Query: 200 LLWNVLING-CSKIGYLRKAVELFGMMPKKNV---------------------------- 230
+ WN +I G GY +A+ELF M + NV
Sbjct: 181 VSWNAMITGYVENCGY-EEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239
Query: 231 --------ASWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S + +++ F+ + GD++ A LFE + K VVSW +I G++ +
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-----AI 333
+AL +F +ML +G ND T++S L ACA +GA++ G +H YI D LKG A+
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYI---DKRLKGVTNGSAL 356
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
T+L+DMYAKCG+IEAA VF K L +W AMI+G A+HGR A F +M +G
Sbjct: 357 RTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGI 416
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
EPD + +L+AC +SG + L + F S+ DY I P ++H+ +++LL G +A
Sbjct: 417 EPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAE 476
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
I+ MP PD VIW +L AC+ H + ++A+
Sbjct: 477 EIIHMMPMEPDGVIWCSLLKACKMHGNLELAE 508
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 166/380 (43%), Gaps = 50/380 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + + A +FD T +++ +N +I G EN ++ + F M+R +VR
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF-VRVHLADMYVQLGKTRGAFK 185
P+ T V + A + LGR +H L+ ++ F + + + ++ L G +
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVD----DHHGFGSSLKIVNAFIGLYSKCGDVE 268
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------- 228
+ E + V+ WN LI G + + ++A+ LF M +
Sbjct: 269 IASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 328
Query: 229 -----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ W+ SLID + + GD++ A ++F M K + SW
Sbjct: 329 HLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSW 388
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
AMI GF+ +G A A +F +M G+ +D T+V LSAC+ G L+ G + ++
Sbjct: 389 NAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVT- 447
Query: 325 NDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D+ + + ++D+ G EA ++ E D + W +++ +HG E A
Sbjct: 448 QDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA 507
Query: 382 IQYFKKMMYSGTEPDGTVFL 401
+ +K+M E G+ L
Sbjct: 508 ESFAQKLMEIEPENSGSYVL 527
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 26/310 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS-RITTQLISSASLHK 77
++++ +P T ++S S S + R+IH + H+ F SS +I I S
Sbjct: 207 MRTNVRPDEG-TLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCG 265
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++ A +F+ + K++ +N LI G + ++ + F MLR PN +T V
Sbjct: 266 DVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 325
Query: 138 SVASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A L + +GR +H I K GV + +R L DMY + G A +VF+ K+
Sbjct: 326 ACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
S WN +I G + G A +LF M K + + V L+ G L
Sbjct: 386 SS----WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRH 441
Query: 252 LFEQMPEKGVVS-----WTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFTVVSAL 303
+F+ + + ++ + MI+ G EAE+ + M D + S L
Sbjct: 442 IFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWC------SLL 495
Query: 304 SACAKVGALE 313
AC G LE
Sbjct: 496 KACKMHGNLE 505
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 250/467 (53%), Gaps = 22/467 (4%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPK 92
ISL+ S QL+QIH+ I L + ++I+ H+S ++YA +FD
Sbjct: 11 ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHP 70
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ I+N +I+G ++ SH ++ +S ++ ML +++P+R T+PF K L G+ L
Sbjct: 71 SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
VK G + + FV+ M+ G A KVFD + V+ WN++++G +++
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD----MGDACEVVTWNIMLSGYNRV 186
Query: 213 GYLR--KAVELFGMMPKKNVASW----VSLIDG------FMRKGDLKKAGELFEQMPEKG 260
+ K + + K W I+G F G++ +A +F+ M +
Sbjct: 187 KQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRD 246
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSWTAMI+G+ + ALA+F +M + V+ ++FT+VS L ACA +GALE G V
Sbjct: 247 VVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKT 306
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I N +G ALVDMY KCGN+ A VF E +KD TWT MI GLAI+G E+
Sbjct: 307 CIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEE 366
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ F M+ + PD ++ +L AC V +FF +M + I+P+V H+ +V
Sbjct: 367 ALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMV 422
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL VG +++AL I MP P+ ++WG+ ACR HK+ ++A +A
Sbjct: 423 DLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMA 469
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 164/479 (34%), Positives = 258/479 (53%), Gaps = 32/479 (6%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLI 70
PT + S P N + + I++ + + L QIHA I + + A++ I
Sbjct: 3 PTQTLYS---PGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCA 59
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRP 127
+S H+ +DYA IF+ +N +N +IRG +E+ ++ I+ +F +S + P
Sbjct: 60 TSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEP 119
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
NR T+P V K+ A + G+ +H L +K G D FV +L MYV G + A +F
Sbjct: 120 NRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF 179
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
KN E ++ ++I+ + G V W +IDG+MR GD K
Sbjct: 180 ----YKNIIEREMV--MMIDRRKRDG---------------EVVLWNVMIDGYMRLGDCK 218
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSAC 306
A LF++M ++ VVSW MI+G+SQNG + A+ +F +M +R N T+VS L A
Sbjct: 219 AARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+++G+LE G +H Y + + +G+AL+DMY+KCG IE A +VF ++++TW+
Sbjct: 279 SRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWS 338
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI G AIHG+ AI F KM +G P ++ +LTAC ++G V+ +F M
Sbjct: 339 AMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSV 398
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+EP ++H+ +V+LL R+G +D+A FI MP PD VIW AL ACR H++ ++ K
Sbjct: 399 DGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGK 457
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/509 (29%), Positives = 252/509 (49%), Gaps = 43/509 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS+ I +LI +++ L+Q+H +I H+L + + L+ + Y+
Sbjct: 7 PSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFL 66
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F H N+ ++N LI G N F + F+ + + + + T+P V K+ S
Sbjct: 67 LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LG LH L+VK G +D L +Y G+ A KVF+E PE+ SV+ W
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPER----SVVTWTA 182
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
L +G + G R+A++LF M + V W+
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEME 242
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L++ + + G ++KA +F+ M EK +V+W+ MI G++ N ++ + F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFL 302
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QML ++ + F++V LS+CA +GAL+ G + I ++F + AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ VF E KEKD++ A I GLA +G + + F + G PDG+ FL +L
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C ++G ++ L FF+++ Y ++ +V+H+ +V+L R G +D A I MP P+
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482
Query: 466 VIWGALFCACRTHKDTKIAKIALQSSCSL 494
++WGAL CR KDT++A+ L+ +L
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIAL 511
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 234/436 (53%), Gaps = 36/436 (8%)
Query: 46 QLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
++RQ+HAQ ++ L S +L+ S I YA SIF+ ++ ++N +IRGL
Sbjct: 3 EVRQLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGL 62
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
+ F +L ++P+ TY FV K+ ++ L G+ +HC I+K+G+ +
Sbjct: 63 MLGKRPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNT 122
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+ L MY G A V E E+N
Sbjct: 123 HIHSSLIHMYTSSGSIVEAECVLREFSEENT----------------------------- 153
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
KN S+I G++ KG + KA +F+QM K V SW+A+I G ++NG +ALA+F
Sbjct: 154 -LAKN-----SMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALF 207
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M+ + N+ +VS LSACA +GAL G +H YI + + TAL+DMYAKC
Sbjct: 208 EDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKC 267
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G+I++ F + +D++TW A+I G AI+G+ ++ + F++M+ G P+G +F+AIL
Sbjct: 268 GDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAIL 327
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC ++G V+ +F+ M D I PS++H+ +V+LL R G++ +A FI MPE P+
Sbjct: 328 SACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPN 387
Query: 465 FVIWGALFCACRTHKD 480
VIWG++ ACRTH D
Sbjct: 388 SVIWGSMLSACRTHND 403
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/389 (19%), Positives = 152/389 (39%), Gaps = 80/389 (20%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI----SSASLHKS- 78
KP +N T T ++ + + + +Q+H QII + ++ I + LI SS S+ ++
Sbjct: 84 KP-DNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAE 142
Query: 79 --------------------------IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112
+D A ++FD K++ ++ +I G +N
Sbjct: 143 CVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTE 202
Query: 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172
++ F M+ PN + + A L L GR +H I + G + + L D
Sbjct: 203 ALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALID 262
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
MY + G + +K F + P ++ ++ W +I+G + G +K ELF G+ P
Sbjct: 263 MYAKCGDIQSGYKFFRKMPRRD----IVTWGAIISGFAIYGQAKKCFELFEEMLADGIYP 318
Query: 227 ----------------------------------KKNVASWVSLIDGFMRKGDLKKAGEL 252
+ ++ + ++D R G LK+A E
Sbjct: 319 NGVIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEF 378
Query: 253 FEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
MPEK V W +M++ + + + F +++ R+ D ++ L G
Sbjct: 379 IISMPEKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIELEPRSGDRYKLAGL-MFGNAGE 437
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+ ++ I D G++ G++ +++
Sbjct: 438 KQEATKIRKMI--EDQGMETTSGSSFIEV 464
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 105/289 (36%), Gaps = 40/289 (13%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T A+A ++ SH N ++S + Q R IHA I S R++T L
Sbjct: 201 TEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTAL 260
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
I + I F +++ + +I G A + C F ML + PN
Sbjct: 261 IDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNG 320
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
+ + VA LS S H V+ G +++ M V LG
Sbjct: 321 VIF------VAILSACS-----HAGYVEEG-------KLYFNQMMVDLG----------- 351
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-NVASWVSLIDGFMRKGDLKK 248
S+ + +++ + G L++A E MP+K N W S++ DL +
Sbjct: 352 -----IRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPNSVIWGSMLSACRTHNDLNR 406
Query: 249 AG----ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
L E P G A + F GE ++A + + D G+
Sbjct: 407 GSWAFRHLIELEPRSGDRYKLAGLM-FGNAGEKQEATKIRKMIEDQGME 454
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 246/494 (49%), Gaps = 71/494 (14%)
Query: 68 QLISSASLHKSID---YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
QLI + L D YA+SIF+ NL I+N + RG A NS + + +V M+ L
Sbjct: 1 QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ PN ++PF+ KS A L G+ +H ++K G + D +V L MY Q G+ A
Sbjct: 61 LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAH 120
Query: 185 KVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRK 217
KVFD + ++ + V+ WN +I+G + ++
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180
Query: 218 AVELFGMMPKKNVA--------------------------SWVS-------------LID 238
A+EL+ M K NV SW+ LID
Sbjct: 181 ALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLID 240
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G+++ A LF+ + +K V+SW +I G + ++AL +F +ML +G ND T
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGE 356
++S L ACA +GA++ G +H YI+ G+ A + T+L+DMYAKCG+IEAA VF
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+ L +W AMI+G A+HG+ A F KM +G +PD F+ +L+AC +SG + L
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ F SM DY I P ++H+ +++LL G +A I MP PD VIW +L AC+
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480
Query: 477 THKDTKIAKIALQS 490
H + ++ + Q+
Sbjct: 481 MHNNVELGESYAQN 494
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 167/379 (44%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + I+ A +FD + K++ +N +I G E +F+ + + M++ +V+
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR LH I G + + L D+Y + G+ A +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F +K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 255 FQGLAKKD----VISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F+ M + + SW
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G+A A +F +M G+ +D T V LSAC+ G L+ G + +S
Sbjct: 371 AMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS-Q 429
Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ CG EA ++ E D + W +++ +H E
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGE 489
Query: 383 QYFKKMMYSGTEPDGTVFL 401
Y + ++ E G+ L
Sbjct: 490 SYAQNLIKIEPENPGSYVL 508
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 129/308 (41%), Gaps = 19/308 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ KP + T ++S S S + RQ+H+ I H ++ +I LI S
Sbjct: 189 MKTNVKPDESTMVT-VVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F K++ +N LI G + ++ + F MLR PN +T V +
Sbjct: 248 VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 307
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + + L DMY + G A +VFD ++ S
Sbjct: 308 CAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS 367
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G A +LF M K + ++V L+ G L +
Sbjct: 368 S----WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHI 423
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M + ++ + MI+ G ++A M M + + S L AC
Sbjct: 424 FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM---PMEPDGVIWCSLLKACK 480
Query: 308 KVGALEAG 315
+E G
Sbjct: 481 MHNNVELG 488
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 229/428 (53%), Gaps = 49/428 (11%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+IRG A N +S + +L+ ++P+ TYPFV KS A L G+ +HC I+K+G
Sbjct: 1 MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60
Query: 160 VEYDAFVRVHLADMYVQLGKTRG-----------AFKVFDETPEKNKSESVLLWNVLING 208
++ V L +YV K G A KVFDE + SV +WN +I
Sbjct: 61 FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVR----SVEVWNRMILR 116
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+ G + A +LF M ++ SW ++I G+++ G++ KA ELFE+MPEK VVSWT+MI
Sbjct: 117 YTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMI 176
Query: 269 NGFS-------------------------------QNGEAEKALAMFFQMLDAGVRANDF 297
+ ++ Q+G+ ++AL +F QML G+ + +
Sbjct: 177 SAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGY 236
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGE 356
T VS SAC+ +G L G ++H I +DF G I TAL++MYAKCG+I A +F +
Sbjct: 237 TFVSVFSACSHLGNLMLGTKIHYAI--DDFSQLGVIAATALIEMYAKCGDINRAFNLFIK 294
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+KD+ W M+ LA+HG+ + A++ F M G +P+ FL L AC + G V+
Sbjct: 295 IGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEG 354
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
FD M +Y I P ++H +V+LLSR G++++AL+ ++KMP D IWGAL C+
Sbjct: 355 QTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCK 414
Query: 477 THKDTKIA 484
D K A
Sbjct: 415 LRGDFKRA 422
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
T LI + I+ A ++F K++ +NV+++ LA + Q + F M + +
Sbjct: 272 ATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGL 331
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTR 181
+PN T+ + + ++ G+ + ++ K EY R+ + D+ + G+
Sbjct: 332 KPNDFTFLGALFACSHGGMVEEGQTIFDMMEK---EYKIRPRIEHFGCIVDLLSRNGRLE 388
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
A V D+ P + V +W L+ GC G ++A E+
Sbjct: 389 EALDVVDKMPFE---ADVAIWGALLGGCKLRGDFKRAGEI 425
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/542 (29%), Positives = 261/542 (48%), Gaps = 80/542 (14%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
+AP+ SS + H+ L+ S +L Q+HA +++H + +T+Q+++S
Sbjct: 2 LAPSAGGASSAR--------HVRELLRRCGSVHRLNQLHAHLVVHGV---DDVTSQILAS 50
Query: 73 ASLHKS---IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
+ + YA +FD + ++N LIR + Q + M+R + PN
Sbjct: 51 YCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNE 110
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV-----------------RVHLAD 172
T PF+ K+ A + H ++VK G FV R +
Sbjct: 111 FTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDE 170
Query: 173 M--------------YVQLGKTRGAFKVF----------DE----------TPEKNKS-- 196
M Y Q G TR A +F DE + E N
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFG 230
Query: 197 -------------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
++L N L++ K G L A F MMP KN SW S++ ++
Sbjct: 231 KLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKR 290
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
+ A + FEQ+PEK ++SW AMI+ + Q G +AL ++ +M G+ ++FT+ + L
Sbjct: 291 ASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVL 350
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
SAC ++G L +G +H+ I N A+ +L+DMYA+CG ++ A +F E K+++
Sbjct: 351 SACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVI 410
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W A+I LA+HGR + A+ +F+ M++ PD F+A+L+AC + G ++ +F +M
Sbjct: 411 SWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAM 470
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
R Y ++P V+H+ +V+LL R GQ+ KA++ I MP PD V+WGAL ACR H +I
Sbjct: 471 RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQI 530
Query: 484 AK 485
K
Sbjct: 531 GK 532
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 241/478 (50%), Gaps = 46/478 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD ++ ++N ++ GL +NS F I F M++ + + T V VA
Sbjct: 160 ARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAE 219
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L+LG G+ CL +K G A+V LA +Y + G+ A +F + + + ++
Sbjct: 220 LQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPD----LVS 275
Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM---------------- 241
+N +I+G + +V LF + K N +S V LI F
Sbjct: 276 YNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCT 335
Query: 242 -------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
R +++ A LF++ EK + SW AMI+G++QNG EKA++
Sbjct: 336 KSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAIS 395
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M VR N TV S LSACA++GAL G VH+ I+ F + TAL+DMYA
Sbjct: 396 LFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYA 455
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I A +F EK+ +TW AMI G +HG +A+ F +M++S P G FL+
Sbjct: 456 KCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLS 515
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC ++G V+ F SM D+ EP +H+ +V+LL R G +DKAL+FI KMP
Sbjct: 516 VLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVE 575
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
P +WGAL AC HKD +A++A L+ PQ + Y G+ + E
Sbjct: 576 PGPPVWGALLGACMIHKDANLARLASDKLFELD---PQNVGYYVLLSNIYSAGQNYPE 630
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 229/489 (46%), Gaps = 49/489 (10%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++LI+ ++ QL Q HAQIIL+ L T+L S K+ID A +F
Sbjct: 9 TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLG 148
+L ++NVLIR + N+ S +S + + + + + P+ TY FV ++ S L LG
Sbjct: 69 PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV---ISGASSLGLG 125
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
LH + +G D FV + Y + + A KVFD E++ +LWN +++G
Sbjct: 126 LLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERD----TVLWNTMVSG 181
Query: 209 CSKIGYLRKAVELFGMMPKKNVA-----------------------------------SW 233
K +A+ +FG M K + S
Sbjct: 182 LVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSH 241
Query: 234 VSLIDG----FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+I G + + G+++ A LF Q+ + +VS+ AMI+G++ N E E ++ +F ++L
Sbjct: 242 AYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLV 301
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
+G + N ++V + G L +H + + + ++ TAL +Y++ IE+
Sbjct: 302 SGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIES 361
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A L+F E+ EK L +W AMI G A +G E+AI F++M P+ +IL+AC
Sbjct: 362 ARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
G + L D + + F E ++ T ++++ ++ G + +A + MPE + V W
Sbjct: 422 LGALSLGKWVHDLINRESF-ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWN 479
Query: 470 ALFCACRTH 478
A+ H
Sbjct: 480 AMISGYGLH 488
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 241/457 (52%), Gaps = 35/457 (7%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H++SL+ ++ K L Q H ++ L + + ++ I + S Y+ SIF H T
Sbjct: 43 HLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+++++N +I+ L+ I + +L +R + + PFV K+V L + +GR +H
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C + +G+ D V L MY S
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMY-----------------------------------SSC 187
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + +A +LF + ++VA W +++ G+ + GD+ A LFE+MPE+ V+SWTA+I G++
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYA 247
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q +A+ MF +M V ++ +++ALSACA +GALE G +HNYI +
Sbjct: 248 QMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVP 307
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ AL+DMYAKCG IE A VF + K ++TWT+MI GLA+HG +A++ F M +
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+P+ F+AIL+AC + G V++ +F M Y I+P ++H+ +++LL R G + +A
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEA 427
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ MP + IWG+L A R H D ++ K ALQ
Sbjct: 428 QELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQ 464
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 241/457 (52%), Gaps = 35/457 (7%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H++SL+ ++ K L Q H ++ L + + ++ I + S Y+ SIF H T
Sbjct: 43 HLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+++++N +I+ L+ I + +L +R + + PFV K+V L + +GR +H
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C + +G+ D V L MY S
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMY-----------------------------------SSC 187
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + +A +LF + ++VA W +++ G+ + GD+ A LFE+MPE+ V+SWTA+I G++
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYA 247
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q +A+ MF +M V ++ +++ALSACA +GALE G +HNYI +
Sbjct: 248 QMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVP 307
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ AL+DMYAKCG IE A VF + K ++TWT+MI GLA+HG +A++ F M +
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+P+ F+AIL+AC + G V++ +F M Y I+P ++H+ +++LL R G + +A
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEA 427
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ MP + IWG+L A R H D ++ K ALQ
Sbjct: 428 QELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQ 464
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 234/457 (51%), Gaps = 40/457 (8%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNV 99
S S R +HA ++ + ++ + + L+++ + A ++ TP +N
Sbjct: 36 SGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTPV---AWNA 92
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHCLIVKS 158
LI G F FV M R P +TY V + + + LG +H +V S
Sbjct: 93 LISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS 152
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
GV D V L DMY + A+KVFD
Sbjct: 153 GVLPDLRVENALVDMYAECADMGSAWKVFDG----------------------------- 183
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
M ++V SW SL+ G R G + +A +LF++MPE+ VSWTAMI+G+
Sbjct: 184 ------MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFR 237
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+AL MF +M + V A++FT+VS ++ACA++GALE G V Y+S + +G AL+
Sbjct: 238 EALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALI 297
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMY+KCG+IE A VF +D TWTA+I GLA++G E+AI+ F +M+ PD
Sbjct: 298 DMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEV 357
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+ +LTAC ++G V FF SM Y I P+V H+ +++LL R G++ +AL+ I++
Sbjct: 358 TFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQ 417
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
MP TP+ IWG L ACR H +++I ++ + L+
Sbjct: 418 MPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELD 454
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 214/408 (52%), Gaps = 36/408 (8%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
MLR V P++ ++ + +S A LG HC I+K G EYD ++ L D Y ++G
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
+ A +VF P ++ V+ N +I+ SK GY+ +A LF M ++N SW S+I
Sbjct: 61 LKCAKRVFMGMPRRD----VVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITC 116
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS--------------------------- 272
+ + GD+ A +F+ P K VVSW A+I+G+
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176
Query: 273 -----QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
Q GE A++MF QM V+ + T+VS LSACA +GAL+ G +H YI
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ +G AL+DMY KCG +EAA VF K++ W ++I GL ++GR E+AI F
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M G +PDG F+ IL+ C +SG + +F M Y +EP V+H+ +V+LL R G
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+ +AL I MP P+ ++ G+L AC+ HKDTK+ + Q L+
Sbjct: 357 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELD 404
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 16/226 (7%)
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +N +I + F + IS F M +V+P +T + + A L L +G
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H I ++ D + L DMY + G A VF KN + WN +I G
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKN----IFCWNSIIVGL 281
Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKG 260
G +A+ F +M K+ + ++V ++ G G L F +M E G
Sbjct: 282 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 341
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
V + M++ + G ++AL + M ++ N + S L AC
Sbjct: 342 VEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 384
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 11 TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
TAI+ ++S + +T ++S + IH I L + LI
Sbjct: 188 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 247
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
+++ A+ +F + KN+ +N +I GL N + I+ F+ M + ++P+ +
Sbjct: 248 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 307
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+ + + LLS G + + ++M V+
Sbjct: 308 TFVGILSGCSHSGLLSAG------------------QRYFSEM----------LGVYGLE 339
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
P V + +++ + GYL++A+EL MP K + ++ +R + K
Sbjct: 340 P------GVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNS---MVLGSLLRACQIHKDT 390
Query: 251 ELFEQMPEK 259
+L EQ+ ++
Sbjct: 391 KLGEQVTQQ 399
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 222/423 (52%), Gaps = 35/423 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+S ID A +FD ++L + ++ G + ++ + F M +V
Sbjct: 306 TTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI 365
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ + V + L LGR +H IV G+ D F+ L D+Y + GK
Sbjct: 366 PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK------- 418
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
L +A+ F +P K+ ASW S++DGF R G +
Sbjct: 419 ----------------------------LDEALRTFEQLPCKSAASWNSMLDGFCRSGGV 450
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
KA + F ++PEK +VSW M+N + ++ ++ +F +M + V+ + T++S LS+C
Sbjct: 451 DKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSC 510
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
AKVGAL G+ V+ YI N+ G+ +GTAL+DMY KCG +E A +F + EK++ WT
Sbjct: 511 AKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT 570
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AM+ A+ G+ +AI + +M G +PD F+A+L AC + G V +F+ +R
Sbjct: 571 AMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSF 630
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y I P++ H+ +V+LL RVG +++ + FI +MP PD IW +L ACR+H + ++A+
Sbjct: 631 YNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQ 690
Query: 487 ALQ 489
A +
Sbjct: 691 AFK 693
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 136/576 (23%), Positives = 244/576 (42%), Gaps = 118/576 (20%)
Query: 6 FNRLTTAI--APTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFAS 62
F+ L+ +I PT N K+SH ++ H II L+ S ++ ++ IHA +I NL
Sbjct: 11 FSSLSPSIHKPPTLNPKTSH----SVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHD 66
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
IT+Q+++ ++D A I + I+N L+ + Q + + M+
Sbjct: 67 PEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVT 126
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT-- 180
V + T+ F+ + + LG +H I+K G + + +L +Y + GK
Sbjct: 127 QGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKE 186
Query: 181 -----------------------------RGAFKVFDET------PEKNKSESVL----- 200
R A +FDE P++ S++
Sbjct: 187 VCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAK 246
Query: 201 ------------------LW------NVLINGCSKIGYLRKAVELFGMMPKK--NVASWV 234
LW N L++ SK G + +A L + +V W
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ G+++ + KA +LF++M E+ +VSWT M++G+ Q G ++L +F QM V
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA---- 350
++ +V+ LSAC + + G VH +I + G +G AL+D+YAKCG ++ A
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426
Query: 351 ------------SLV---------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
S++ F + EKD+++W M+ H + ++ +
Sbjct: 427 EQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFE 486
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTV 438
F KM S +PD T +++L++C G ALN + + +IE + T
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVG----ALNH--GIWVNVYIEKNEIGIDAMLGTA 540
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++++ + G V+ A ++ E FV W A+ A
Sbjct: 541 LIDMYGKCGCVEMAYEIFTQIIEKNVFV-WTAMMAA 575
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 163/374 (43%), Gaps = 86/374 (22%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
LI+ C K ++ E+ G + K SL + M + G LK+ +LFE+M +
Sbjct: 139 LIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRD 198
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
V+SW MI+ + G +AL +F +ML +GV ++ T+VS +S CAK+ LE G R+H
Sbjct: 199 VISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHL 258
Query: 321 YISCNDFGLKGAIGTALVDMYAKCG---------------------------------NI 347
YI N ++G++ LVDMY+KCG I
Sbjct: 259 YIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKI 318
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ A +F + E+ L++WT M+ G G Y ++++ F++M + PD + +L+AC
Sbjct: 319 DKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSAC 378
Query: 408 WYSGQVKLA----------------------LNFF-------DSMR-FDYFIEPSVKHHT 437
+ L L+ + +++R F+ S
Sbjct: 379 VHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWN 438
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL----------------FCACRTH--K 479
+++ R G VDKA +F NK+PE D V W + FC ++ K
Sbjct: 439 SMLDGFCRSGGVDKARDFFNKIPEK-DIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497
Query: 480 DTKIAKIALQSSCS 493
K I+L SSC+
Sbjct: 498 PDKTTLISLLSSCA 511
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 47/472 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNL 94
+ + NS +L+QIHA +L L S I +++ A++ S D YA +FD N
Sbjct: 1 MAEACNSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNT 60
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA--------SLSLL 145
+N LIRG A++S S H V +R + V P+ T+ F+ K+ + +L L+
Sbjct: 61 FFYNTLIRGYAKSS-IPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLV 119
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+H ++K G FVR L +Y G A++VFDET
Sbjct: 120 VECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDET--------------- 164
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+G +V SW L+ +R G+L++A +F+QMPE+ VVSWT
Sbjct: 165 ------VGV--------------DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWT 204
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M++ +SQ + +AL ++ MLD GVR ++ T+VS +SAC +G L+ G VH+YI N
Sbjct: 205 TMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDEN 264
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F ++ AL+DMYAKCG ++ A VF K L+TW +MI A + E A F
Sbjct: 265 GFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLF 324
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M G PDG FLA+LTA + G V F+SM+ D+ IE ++H+ VVN+L +
Sbjct: 325 SRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQ 384
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
G +++A I MP + V+WG L ACR H D + + ++ L L
Sbjct: 385 AGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLELKLD 436
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 198/340 (58%), Gaps = 4/340 (1%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+++G+ A K+FDE P K+ + WN +++G K G + KA LF MP++NV SW
Sbjct: 23 LKVGELSEACKLFDEMPMKD----AVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWS 78
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+++ G+ + GD++ A LF++MP K +VSWT +++G++ G A+ A+ F QM +AG++
Sbjct: 79 TMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKP 138
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+D TV+S L++CA+ G L G RVH I + + ALVDMYAKCG ++ A VF
Sbjct: 139 DDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVF 198
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+KDL++W M+ GLA+HG E+A+Q F M G PD +A+L AC ++G V
Sbjct: 199 NGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVD 258
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ +F++M DY I P ++H+ +V+LL R G++ +A + MP P+ VIWG L A
Sbjct: 259 EGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGA 318
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
CR H +A+ L L S P S GD
Sbjct: 319 CRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGD 358
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 58/320 (18%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ ++S ++ A +FD KNL + +++ G A + I F M ++
Sbjct: 78 STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLK 137
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAF 184
P+ T + S A LL LG+ +H I + + Y V V L DMY + G+ A
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIER--IRYKCSVNVSNALVDMYAKCGQVDRAL 195
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK---------- 228
VF+ +K+ ++ WN ++ G + G+ KA++LF +M P K
Sbjct: 196 SVFNGMSKKD----LVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCAC 251
Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS 263
++ + ++D R G LK+A L + MP E VV
Sbjct: 252 VHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVI 311
Query: 264 WTAMINGFSQN---GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
W ++ + G AE+ L F++ + +++++S + A A + A VR
Sbjct: 312 WGTLLGACRMHNAVGLAEEVLDCLFKLEPSD--PGNYSLLSNIFASAGDWSSVANVR--- 366
Query: 321 YISCNDFGLKGAIGTALVDM 340
+ +FG++ G + +++
Sbjct: 367 -LQMKNFGIQKPSGASSIEV 385
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 32/246 (13%)
Query: 34 IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+IS++ S + L +++H I S ++ L+ + +D ALS+F+ +
Sbjct: 143 VISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMS 202
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
K+L +N +++GLA + H + + F M + RP+++T V L
Sbjct: 203 KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAV-----------LCAC 251
Query: 151 LHCLIVKSGVEY------DAFVRVH------LADMYVQLGKTRGAFKVFDETPEKNKSES 198
+H V G+ Y D + H + D+ + G+ + A+++ P + +
Sbjct: 252 VHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVE---PN 308
Query: 199 VLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V++W L+ C + +G + ++ + + ++ L + F GD + Q
Sbjct: 309 VVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQ 368
Query: 256 MPEKGV 261
M G+
Sbjct: 369 MKNFGI 374
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 239/420 (56%), Gaps = 10/420 (2%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFTPKNLHIFNV 99
+T L Q HA +I+ L + T+L++ A+L S + +A +IF H + +FN
Sbjct: 25 ATSHLHQAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHNPSPFMFNT 84
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+I +S ++ +V ML P+ T+PF+ KS ++ LG LH +VK G
Sbjct: 85 IIMA---SSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFG 141
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
++ D FV ++ +Y + R A KVFDE+ V+ W LI G S G + +A
Sbjct: 142 LDRDVFVVNNMIALYSSFRELRSARKVFDES---YSLVDVVSWTTLITGFSNSGQIDEAR 198
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
++F +MP KN SW ++I G+ + +A +LF++MP++ SW+AM++G+SQ G +
Sbjct: 199 KIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 258
Query: 280 ALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
AL +F +M+ + N+ +VSA+SACA++ ALE G +H+YI + +GT L+
Sbjct: 259 ALDLFMEMVTGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLL 318
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMY KCG+I A+ VF E+++ +W +MI GLA++G ++A+ F KM + G P+
Sbjct: 319 DMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAI 378
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+A+LT C +SG + F M Y I+P +KH+ +V+LL R G V +AL+F+ +
Sbjct: 379 TFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEE 438
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 250/489 (51%), Gaps = 48/489 (9%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
++ + ++AI + S PS++ + L+ S Q++QIHAQ++ H L ++
Sbjct: 32 YISSNTSSAIWEPSGTSSFSLPSHST----FVQLLKKRPSLTQIKQIHAQVVTHGLAQNT 87
Query: 64 RITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ LI S +++ +A +FD F P + I+N++I+ ++ Q + F ML
Sbjct: 88 SLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTI-IWNLMIQAYSKTPSSQESLYLFHQML 146
Query: 122 RLSVRP---NRLTYPFVSKSVAS-LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
RP ++ T+ FV + + +L G +H ++VK G E D FV L +MY
Sbjct: 147 AHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIF 205
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
+ A +VFDE MP+++V +W S++
Sbjct: 206 SRMVDAKRVFDE-----------------------------------MPQRDVITWTSVV 230
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRAND 296
G+ +G+L +A ELF+ MP + VSW M+ G+ + +AL F ML V+ N+
Sbjct: 231 KGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNE 290
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
+VS LSACA +GAL+ G +H YI N L I TAL+DMYAKCG I+ A VF
Sbjct: 291 AVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDG 350
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
++DLLTWT+MI GL++HG + + F +M+ G +PD L +L C +SG V+
Sbjct: 351 LHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEG 410
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
L+ F M + I P ++H+ +++LL R G+++ A I MP PD V W AL ACR
Sbjct: 411 LSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACR 470
Query: 477 THKDTKIAK 485
H D + +
Sbjct: 471 IHGDVDLGE 479
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 20/318 (6%)
Query: 48 RQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R + A+ + + IT T ++ ++ + A +FD +N + V++ G
Sbjct: 207 RMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVG 266
Query: 107 NSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + + F ML V+PN + + A L L G+ +H I K+ + +
Sbjct: 267 HRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN 326
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L DMY + G+ A +VFD +++ +L W +I+G S G + + F M
Sbjct: 327 ISTALIDMYAKCGRIDCARRVFDGLHKRD----LLTWTSMISGLSMHGLGAECLWTFSEM 382
Query: 226 P----KKNVASWVSLIDGFMRKGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGE 276
K + + + +++G G +++ +F M P G+V + +I+ + G
Sbjct: 383 LAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGR 442
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
E A F+ + + D AL SAC G ++ G R+ N+I+ G G
Sbjct: 443 LESA----FEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYV 498
Query: 336 ALVDMYAKCGNIEAASLV 353
L ++YA G E+ + V
Sbjct: 499 LLSNLYASMGQWESVTKV 516
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 251/503 (49%), Gaps = 47/503 (9%)
Query: 35 ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+SL+ + N + L Q +HA++ L + T L+S + S++ AL +F+
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKG 369
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N+ + +I G A++ + F M+ + PNR+T+ + + + S L GR +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H I+K+G D VR L MY + G A VF+ ++N V+ WN +I +
Sbjct: 430 HDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQN----VVAWNAMITAYVQ 485
Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
AV F + K+ + WV
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545
Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+L+ F+ GDL A LF MPE+ +VSW +I GF Q+GE + A F M ++GV
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ + T L+ACA AL G R+H I+ +GT L+ MY KCG+I+ A L
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHL 665
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF +K++ +WT+MI G A HGR ++A++ F +M G +PD F+ L+AC ++G
Sbjct: 666 VFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+K L+ F+SM+ D+ IEP ++H+ +V+L R G + +A+ FINKM PD +WGAL
Sbjct: 726 IKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784
Query: 473 CACRTHKDTKIAKIALQSSCSLN 495
AC+ H D ++A+ Q L+
Sbjct: 785 GACQVHLDVELAEKVAQKKLELD 807
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/516 (24%), Positives = 240/516 (46%), Gaps = 45/516 (8%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
+L+ A+ ++ S H + T + ++ L + +IH I + +
Sbjct: 84 QLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWN 143
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LIS + + + A IFD K+++ +N+L+ G ++ ++ M++ V+P
Sbjct: 144 MLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP 203
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
++ T+ ++ + A + G L LI+ +G + D FV L +M+++ G A KVF
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG---- 239
+ P ++ ++ W +I G ++ ++A LF +M ++ V ++VSL+
Sbjct: 264 NNLPRRD----LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319
Query: 240 -------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+ + G ++ A E+F + + VVSWTAMI
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
GF+Q+G E+A F +M+++G+ N T +S L AC++ AL+ G ++H+ I +
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ TAL+ MYAKCG++ A VF +++++ W AMI H +Y+ A+ F+ +
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL 499
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ G +PD + F +IL C ++L + S+ E + +V++ G
Sbjct: 500 LKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGD 558
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ A+N N MPE D V W + H + + A
Sbjct: 559 LMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFA 593
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 193/409 (47%), Gaps = 53/409 (12%)
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
++ +R TY + + L G +H I S ++ D F+ L MY + G T A
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159
Query: 185 KVFDETPEKNKSESVLLWNVL-----------------------------------INGC 209
++FDE P+K+ V WN+L +N C
Sbjct: 160 QIFDEMPDKD----VYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNAC 215
Query: 210 SKIGYLRKAVELFGMMPKKNVASW-------VSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+ + K ELF ++ A W +LI+ ++ G + A ++F +P + ++
Sbjct: 216 ADAKNVDKGGELFSLILN---AGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+WT+MI G +++ + ++A +F M + GV+ + VS L AC ALE G RVH +
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ +GTAL+ MY KCG++E A VF K +++++WTAMI G A HGR E+A
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVN 441
+F KM+ SG EP+ F++IL AC +K D ++ Y + V+ T +++
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLS 450
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+ ++ G + A N ++ + + V W A+ A H+ A Q+
Sbjct: 451 MYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQHEKYDNAVATFQA 498
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 198/422 (46%), Gaps = 49/422 (11%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+S +P N +T I+ ++ KQ RQIH +II R+ T L+S + S
Sbjct: 399 IESGIEP-NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGS 457
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A ++F+ + +N+ +N +I ++ + + ++ F +L+ ++P+ T+ +
Sbjct: 458 LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNV 517
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
S L LG+ + LI+++G E D +R L M+V G A +F++ PE++
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERD---- 573
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSLIDG----- 239
++ WN +I G + G + A + F MM + V AS +L +G
Sbjct: 574 LVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHA 633
Query: 240 --------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ + G + A +F +P+K V SWT+MI G++Q+G ++
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKE 693
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
AL +F QM GV+ + T V ALSACA G ++ G +H++ S DF ++ + +
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG--LHHFESMKDFNIEPRMEHYGCM 751
Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
VD++ + G + EA + + D W A++ +H E A + +K + D
Sbjct: 752 VDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDD 811
Query: 397 GT 398
G
Sbjct: 812 GV 813
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/493 (24%), Positives = 216/493 (43%), Gaps = 63/493 (12%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI+ +D AL +F++ ++L + +I GLA + F+ + F M
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+P+++ + + K+ L G+ +H + + G++ + +V L MY + G A
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------------- 230
+VF+ +N V+ W +I G ++ G + +A F M + +
Sbjct: 362 EVFNLVKGRN----VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGAC 417
Query: 231 ------------------ASWVS-------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
A +++ L+ + + G L A +FE++ ++ VV+W
Sbjct: 418 SRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWN 477
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI + Q+ + + A+A F +L G++ + T S L+ C ALE G V + I
Sbjct: 478 AMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F I ALV M+ CG++ +A +F + E+DL++W +I G HG + A YF
Sbjct: 538 GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF 597
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
K M SG +PD F +L AC S + ++ + ++ V T ++++ ++
Sbjct: 598 KMMQESGVKPDQITFTGLLNAC-ASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTK 656
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
G +D A + +P+ + W ++ H K A L L +C
Sbjct: 657 CGSIDDAHLVFHNLPKK-NVYSWTSMITGYAQHGRGKEA---------LEL-------FC 699
Query: 506 QTFMQQKGDGRTW 518
Q MQQ+G W
Sbjct: 700 Q--MQQEGVKPDW 710
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 160/549 (29%), Positives = 277/549 (50%), Gaps = 80/549 (14%)
Query: 15 PTTNIKSSHKPSNNI--TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
P+ ++++ +NN+ I+S I +S+KQL+++HA+++ LF ++L ++
Sbjct: 7 PSISLQNFSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTA 66
Query: 73 ASLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNR 129
++L ++DYA ++FD NL+ +N LIR A +S FQS + + + PN+
Sbjct: 67 SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNK 126
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T+PFV K+ + L +G +H + +K D ++ L Y G A ++F
Sbjct: 127 FTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKG 186
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV------------------- 230
K+ V+ WN +I+ ++ A+ELF M ++NV
Sbjct: 187 ISCKD----VVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242
Query: 231 ---ASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
WV +++D + + G + A +LF++MPE+ V SWT M++G
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302
Query: 271 FS-------------------------------QNGEAEKALAMFFQM-LDAGVRANDFT 298
++ QNG+ ++ALA+F ++ L + ++ T
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+VS LSACA++GA++ G +H YI L + ++LVDMYAKCG++E A VF +
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE 422
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
E+D+ W+AMI GL +HGR + AI F +M + +P+ F +L AC ++G V
Sbjct: 423 ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRV 482
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
FF M Y + P +KH+ +V++L R G +++A+ IN+M TP +WGAL AC H
Sbjct: 483 FFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLH 542
Query: 479 KDTKIAKIA 487
+ ++ ++A
Sbjct: 543 MNVELGELA 551
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 158/522 (30%), Positives = 262/522 (50%), Gaps = 65/522 (12%)
Query: 55 ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
++ + FASSR+ + S + +DY +I + N +NV IRG ++ + + +
Sbjct: 6 LIEDGFASSRLIA--FCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAV 63
Query: 115 SHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
+ +L+ +P+ TYP + K+ A LSL+ +G + ++ G + D FV + +
Sbjct: 64 VLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHL 123
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP- 226
V G GA K+FD++ ++ ++ WN +ING + G+ +A+ + G+ P
Sbjct: 124 LVSCGDLDGARKMFDKSCVRD----LVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPD 179
Query: 227 --------------------------------KKNVASWVSLIDGFMRKGDLKKAGELFE 254
K V +L+D +M+ G+L+ A +LF+
Sbjct: 180 EVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFD 239
Query: 255 ----------------QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+MP+K VV W AMI G+ ++ALA+F +M + ++ T
Sbjct: 240 SMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVT 299
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+VS LSAC+++GAL+ G+ +H+YI ++ L A+GTAL+DMYAKCG I A VF E
Sbjct: 300 MVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 359
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
++ LTWTA+I GLA+HG AI YF +M+ + PD FL +L+AC + G V+
Sbjct: 360 GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRK 419
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F M + + P +KH++ +V+LL R G +++A I MP D V+WGALF ACR H
Sbjct: 420 YFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIH 479
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ + + A ++ P G+ W+E
Sbjct: 480 GNVLMGERAASKLLQMD---PHDSGIYVLLANMYGEAEMWKE 518
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 255/488 (52%), Gaps = 17/488 (3%)
Query: 22 SHKPSNNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S PS + +++ L + S RQ+ AQ+++ L +R LI+S+ S
Sbjct: 3 SPPPSARLHAGALLAGLARRATSPAAARQLQAQLLVRGLPLPARAAVALIASS---HSPR 59
Query: 81 YALSIFDHFTP---KNLHIFNVLIRGLAEN-----SHFQSCISHFVFMLRLSV-RPNRLT 131
+A ++FD P +N++++ I A + S + ++ F MLR V RPN T
Sbjct: 60 HARAVFDSAVPAASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFT 119
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
V + ++L + G +H + +G+ + V L DMY LG+ A +VFDE P
Sbjct: 120 ASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMP 179
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
N V+L N ++ + G + ++F M +++ SW +L+ G++R+G+ A +
Sbjct: 180 STN----VVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARD 235
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LFE+MP++ V SW +I SQ G A+ +F +M A + + T+ +SACA++G+
Sbjct: 236 LFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGS 295
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
L +VH + + + +L+DMYAKCG++ A L+F ET+ KD +++ MI
Sbjct: 296 LSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICA 355
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
LA HG A+Q F +M G +PD FL +L+AC ++G V +F+SMR +Y IE
Sbjct: 356 LAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQ 415
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
S H+ +V+L R G +++A MP P +WGAL ACR H + ++ K+A +
Sbjct: 416 SPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAAREL 475
Query: 492 CSLNLSIP 499
++ P
Sbjct: 476 IAIEPGNP 483
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 241/466 (51%), Gaps = 38/466 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E I+ L+H S L QIHA + H L S++I IS + I YA +F
Sbjct: 9 ERRILRLLHGHKSRTHLTQIHAHFLRHGLHQSNQILAHFISVCASFNRIAYADRLFSQSH 68
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ +FN +I+ + + F + F M + P++ T+ + KS A+L SLG+
Sbjct: 69 NPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQC 128
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+ + + G +R+ + ++YV K A+K+FDE
Sbjct: 129 VISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDE--------------------- 167
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
M ++V W +I GF + G++ LF QM E+ +VSW +I+
Sbjct: 168 --------------MSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISC 213
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC--NDFG 328
+QN +AL +F QM + G + ++ TVV+ L C+++GALE G R+H+Y S N G
Sbjct: 214 LAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVG 273
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +G +L+D Y KCGNIE A +F + K +++W +I G A++G+ E AI F +M
Sbjct: 274 IT-TVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEM 332
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+P+ F+A+LTAC +SG ++ F SM DY I+P ++H +V+LL R G
Sbjct: 333 RKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGC 392
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
V++A I MP P+ +WGA+ ACRTH + K+A++A++ SL
Sbjct: 393 VEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISL 438
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/509 (29%), Positives = 251/509 (49%), Gaps = 43/509 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS I +LI + + L+QIH +I H+L + + L+ + Y+
Sbjct: 7 PSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYL 66
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F H N+ ++N LI G N F + F+ + + + + T+P V K+ S
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LG LH L+VK G +D L +Y G+ A K+FDE P++ SV+ W
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR----SVVTWTA 182
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
L +G + G R+A++LF M + V W+
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L++ + + G ++KA +F+ M EK +V+W+ MI G++ N ++ + +F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QML ++ + F++V LS+CA +GAL+ G + I ++F + AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ VF E KEKD++ A I GLA +G + + F + G PDG+ FL +L
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C ++G ++ L FF+++ Y ++ +V+H+ +V+L R G +D A I MP P+
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482
Query: 466 VIWGALFCACRTHKDTKIAKIALQSSCSL 494
++WGAL CR KDT++A+ L+ +L
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIAL 511
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 149/454 (32%), Positives = 242/454 (53%), Gaps = 40/454 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFTPKNLH 95
L+ S S +Q++Q+HA++I L T +L+ +S+ I YA +FDHF +L
Sbjct: 7 LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLF 66
Query: 96 IFNVLIRGLA-ENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
++N +I+ LA + + F ++R + PN+ ++ F K S + G +
Sbjct: 67 LYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRV 126
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+K G+E + FV L MYV L A KVFD W+
Sbjct: 127 HAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFD-------------WS---------- 163
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
P +++ SW ++ G+ R G + +A +LF++MPEK VVSWT MI+G Q
Sbjct: 164 ------------PNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G +AL +F ML G+ N++T+ S+L+ACA + AL+ G +H YI N+ + +
Sbjct: 212 VGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERL 271
Query: 334 GTALVDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
L+DMYAKCG +E AS +F ++ + W AMI G A+HG+ ++AI+ F++M
Sbjct: 272 LAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE 331
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
P+ F+A+L AC + +V+ +F+SM Y ++P ++H+ +V+LL R G++ +
Sbjct: 332 KVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A I+ M TPD IWGAL AC+ HKD ++ +
Sbjct: 392 AEEIISSMHLTPDVAIWGALLSACKIHKDAEMGE 425
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 247/470 (52%), Gaps = 40/470 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS---SASL 75
I S +N+ ET +S + + ++L+QIHA+++ L S T+ +S S++
Sbjct: 4 ISCSFSLEHNLYET--MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTS 61
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ YA +FD F + ++N++IRG + + + + + ML S N T+P +
Sbjct: 62 SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSL 121
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ ++LS +H I K G E D + L + Y G + A +FD PE +
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ WN +I G K G + A+ LF M +KN SW ++I G++ + D+ K
Sbjct: 182 ----VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV-QADMNK------- 229
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+AL +F +M ++ V ++ ++ +ALSACA++GALE G
Sbjct: 230 -----------------------EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H+Y++ + +G L+DMYAKCG +E A VF K+K + WTA+I G A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G +AI F +M G +P+ F A+LTAC Y+G V+ F SM DY ++P+++H
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +V+LL R G +D+A FI +MP P+ VIWGAL ACR HK+ ++ +
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 436
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 160/542 (29%), Positives = 260/542 (47%), Gaps = 80/542 (14%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
+AP+ SS + H+ L+ S +L Q+HA +++H + +T+Q+++S
Sbjct: 2 LAPSAGGASSAR--------HVRELLRRCGSVHRLNQLHAHLVVHGV---DDVTSQILAS 50
Query: 73 ASLHKS---IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
+ + YA +FD + ++N LIR + Q + M+R + PN
Sbjct: 51 YCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNE 110
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV-----------------RVHLAD 172
T PF+ K+ A + H ++VK G FV R +
Sbjct: 111 FTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDE 170
Query: 173 M--------------YVQLGKTRGAFKVF----------DE----------TPEKNKS-- 196
M Y Q G TR A +F DE + E N
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFG 230
Query: 197 -------------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
++L N L++ K G L A F MMP KN SW S++ ++
Sbjct: 231 KLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKR 290
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
+ A + FEQ+PEK ++SW AMI+ + Q G +AL ++ +M G+ ++FT+ + L
Sbjct: 291 ASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVL 350
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
SAC ++G L +G +H+ I N A+ +L+DMYA+CG ++ A +F E K+++
Sbjct: 351 SACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVI 410
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W A+I LA+HGR + A+ +F+ M+ PD F+A+L+AC + G ++ +F +M
Sbjct: 411 SWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAM 470
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
R Y ++P V+H+ +V+LL R GQ+ KA++ I MP PD V+WGAL ACR H +I
Sbjct: 471 RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQI 530
Query: 484 AK 485
K
Sbjct: 531 GK 532
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 267/510 (52%), Gaps = 38/510 (7%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS------RITTQLISSASL 75
S +P + T ++S + + +S Q HA ++ A+S + L S+++
Sbjct: 2 SRRPPPHALAT-LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASAS 60
Query: 76 HKSIDYALSIFDHFTPK-NLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ D+A S+F H + + H F N L+R A S +S + +F M R++V P+ T+
Sbjct: 61 PSAADHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRVAVAPDAYTF 119
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD---- 188
P V K+ +G +H V++G++ D F R L Y ++G R KVFD
Sbjct: 120 PAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR 179
Query: 189 ----------------------ETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGMM 225
+ ++ + W +I+G ++ G + +A ELF M
Sbjct: 180 DLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQM 239
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
P +++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G+ + GE +AL F
Sbjct: 240 PDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQ 299
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+ML G++ + V A++ACA++GALE G +H+Y+ + TAL+DMY KCG
Sbjct: 300 RMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCG 359
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++ A L+F +K ++TW MI GL HG AI+ F +M D LA+LT
Sbjct: 360 RLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLT 419
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
+C ++G V L F M D +EP V+H+ +++LL R G+VD+A N I MP P
Sbjct: 420 SCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTP 479
Query: 466 VIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+WG+L +CR+H+ ++A+++++ SL
Sbjct: 480 ELWGSLLASCRSHRCVELAELSVERLASLG 509
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 261/505 (51%), Gaps = 44/505 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI +S + L QIH ++++ L + + T+L++ +S I YA +FD F
Sbjct: 55 SDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEF 114
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
++ ++N +IR + N+ ++ + + +M V P+ T+P+V K+ L L
Sbjct: 115 CYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSC 174
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H I+K G D FV+ L +Y + G A VFD + +++ W +I+G
Sbjct: 175 IIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHR----TIVSWTSIISGY 230
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSL------------------IDGFMRKGDLKK-- 248
++ G +A+ +F M V W++L I GF+ K L+
Sbjct: 231 AQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEP 290
Query: 249 ------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
A F+QM V+ W AMI+G+++NG AE+A+ +F M+
Sbjct: 291 ALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISR 350
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
++ + TV SA+ A A+VG+LE + +Y+S +++G + T+L+DMYAKCG++E A
Sbjct: 351 NIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +KD++ W+AMI G +HG+ +AI + M +G P+ F+ +LTAC +S
Sbjct: 411 RRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHS 470
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G VK F M+ D+ I P +H++ VV+LL R G + +A FI K+P P +WGA
Sbjct: 471 GLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529
Query: 471 LFCACRTHKDTKIAKIALQSSCSLN 495
L AC+ ++ + + A SL+
Sbjct: 530 LLSACKIYRCVTLGEYAANKLFSLD 554
>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 272/526 (51%), Gaps = 68/526 (12%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ--LISSASLHKSI-DYALSI 85
+ T + +L+ ++ K +QIHAQII +NL I L+ + +K+I +Y LSI
Sbjct: 1 MVATKLTTLMKKCSTVKHAKQIHAQIITNNLTHLEPIFIHRILLCDITNYKTISNYILSI 60
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
H + + +IR ++ F +S +V M R+ + P+ + KS A +
Sbjct: 61 LHHLRNPDSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDD 120
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------- 194
G +H + K G + +V+ L D+Y ++G A KVFDE P+KN
Sbjct: 121 LCGLLIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGY 180
Query: 195 ----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW----- 233
+ V+ WN +++G +K G + +A LF MP++N ASW
Sbjct: 181 IKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMIT 240
Query: 234 --------------------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+++I G+ + GD+ A ELF+QM +K ++S+ AM
Sbjct: 241 GYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAM 300
Query: 268 INGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
I ++Q+ + ++AL +F ML D+ + + T+ S +SAC+++G LE + + I N
Sbjct: 301 IACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQI--N 358
Query: 326 DFG--LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+FG L + TAL+D+YAKCG+I+ A +F +++D++ ++AMI+G I+GR A++
Sbjct: 359 NFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVE 418
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F++M P+ + ILTA ++G + F SM+ D I PSV H+ ++V+LL
Sbjct: 419 LFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISMK-DNGIVPSVDHYGIMVDLL 477
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G +D+A I KMP P+ +WGAL ACR H + K+ +IA+Q
Sbjct: 478 GRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQ 523
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 40/449 (8%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
++ +++HA +I L +LI+ ++S S+ +A +FD + +++N + R
Sbjct: 2 QEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMFR 61
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
A + + MLR P+ T+PF+ K+ ++L+ L G+ LHC +K G+
Sbjct: 62 VYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGG 121
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
FV L +Y A +VFD +GY
Sbjct: 122 HVFVENSLIHLYGSNSGMDSARRVFD----------------------GMGY-------- 151
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+++ASW +L+ + +K A ++F++MPE+ V+S++AMI + + +AL
Sbjct: 152 -----RDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALD 206
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDM 340
+F ++ + +D V+S L ACA +GAL+ G V++Y+ C G + I TAL+DM
Sbjct: 207 LFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYV-CQSKGDYVDSRIATALIDM 265
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
+ KCG+IE A LVF KEK + WTAM+ GLA+HG EQ I+ F+KM+ SG +P+G F
Sbjct: 266 FFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTF 325
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+A+L+ C +SG V L +FD M D+ +EP+V+H VV+LL R G +D+A+ I++MP
Sbjct: 326 VALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMP 385
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P+ IWG+L ACR +K+ +I ++A Q
Sbjct: 386 FEPNAAIWGSLLNACRVYKNVEIGELAAQ 414
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 250/486 (51%), Gaps = 7/486 (1%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL-HKSIDYALSIFD 87
IT + +I++ ++Q H +++ NL + + ++ ++ +A L H I +FD
Sbjct: 6 ITTPQLNYMINTYIDNNNVKQAH-KLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFD 64
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
K+ +N+++ G + + F+ M R V PN T + ++V S L L
Sbjct: 65 KMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVL 124
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
R +H L G + FV L Y L + + F++ K+ V WN L++
Sbjct: 125 VRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKD----VTSWNALVS 180
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
++G A F MP++N+ SW +L++G+++ + KA +F+ M E+ VVSWTAM
Sbjct: 181 SYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAM 240
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+G+ QN AL +F M R N FT S L ACA +L G+++H I +
Sbjct: 241 ISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGI 300
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
T+LVDMYAKCG+++AA VF ++K+L++W A+I G A HG +A++ F +
Sbjct: 301 ANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDR 360
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M GT PD F+ +L+AC ++G V+ F M Y I+ ++H++ +V+L R G
Sbjct: 361 MKVVGT-PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAG 419
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507
+ D+A N I MP PD V+WGAL AC H + ++ + A + L S P + S
Sbjct: 420 RFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSK 479
Query: 508 FMQQKG 513
+KG
Sbjct: 480 IQGEKG 485
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 9/246 (3%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
K+ +P N+ T + ++ S+S Q+H II + T L+ + +
Sbjct: 262 KTETRP-NHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDM 320
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A +F+ KNL +N +I G A + + F M ++ P+ +T+ V +
Sbjct: 321 DAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRM-KVVGTPDEVTFVNVLSAC 379
Query: 140 ASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L+ G + ++ K G++ + + D+Y + G+ A + P +
Sbjct: 380 VHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFE---PD 436
Query: 199 VLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V+LW L+ C S + A E + + S+ L KG EL +
Sbjct: 437 VVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDT 496
Query: 256 MPEKGV 261
M E+G+
Sbjct: 497 MKERGI 502
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 245/487 (50%), Gaps = 54/487 (11%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA-----SSRITTQLI 70
T I +SH N++ + I +LI + QL Q+HAQ L + S +I T+++
Sbjct: 13 TLMIITSHSQIYNLSHS-IYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKIL 71
Query: 71 ----------SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
SS SL + YA+S FD+ + +NV+IR +S S + F+ M
Sbjct: 72 YALTTIPTPKSSFSL---LHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQM 128
Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
R SV P+ +YPF K+ A L +LSL + LH + K G D +V L +Y
Sbjct: 129 RRFSVPPDFHSYPFALKACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCL 188
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
A +VFDE+ +++ V S+ +L+DGF
Sbjct: 189 NYACQVFDESSDRD-----------------------------------VVSYNALVDGF 213
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
++ G+ KA E+F+ MP + VSW ++I G++Q +A+ +F M+ + ++ +V
Sbjct: 214 VKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALV 273
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
SALSACA++G LE G ++H+YI N + T LVD YAK G I+ A VF + +K
Sbjct: 274 SALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPDK 333
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
L+TW AM+ G+A+HG + YF +MM +G +PDG FL +L C + G V A F
Sbjct: 334 SLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCSHGGLVDEAKKLF 393
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
D M Y + +KH+ + +LL+R G + +A+ +P D +W L CR H +
Sbjct: 394 DEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVWSGLLGGCRIHGN 453
Query: 481 TKIAKIA 487
+IA+ A
Sbjct: 454 IEIAEQA 460
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 254/519 (48%), Gaps = 74/519 (14%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ +S K+L+ +HAQIILH L A +L+S + YA +FD N +
Sbjct: 45 LLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFM 104
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N LIRG + ++ + F M+ PN+ T+PFV K+ A+ +H +
Sbjct: 105 YNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAI 164
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+ A V+ + YV A +VFD+ ++ +++ WN +I G SK+G+
Sbjct: 165 KLGMGPHACVQNAILTAYVACRLILSARQVFDDISDR----TIVSWNSMIAGYSKMGFCD 220
Query: 217 KAVELFGMMPKKNVASWV---------------------------------------SLI 237
+A+ LF M + V + V +LI
Sbjct: 221 EAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALI 280
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS------------------------- 272
D + + G L+ A +F+QM +K VVSWT+M+N ++
Sbjct: 281 DMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNS 340
Query: 273 ------QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
Q G+ +A+ +F +M +GV +D T+VS LS C+ G L G + H YI N
Sbjct: 341 IICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI 400
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ + +L+DMYAKCG ++ A +F EK++++W +I LA+HG E+AI+ FK
Sbjct: 401 ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFK 460
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M SG PD F +L+AC +SG V + +FD M + I P V+H+ +V+LL R
Sbjct: 461 SMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRG 520
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
G + +A+ I KMP PD V+WGAL ACR + + +IAK
Sbjct: 521 GFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAK 559
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 180/421 (42%), Gaps = 70/421 (16%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HAQ I + + + ++++ + I A +FD + + + +N +I G ++
Sbjct: 159 VHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGF 218
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
I F ML+L V + T + + + L LGR +H IV +GVE D+ V
Sbjct: 219 CDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNA 278
Query: 170 LADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESVLLW 202
L DMY + G + A VFD+ +K+ ++V+ W
Sbjct: 279 LIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSW 338
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKK---------------------------- 228
N +I + G +AVELF G+MP
Sbjct: 339 NSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICD 398
Query: 229 -----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+V SLID + + G L+ A ++F MPEK VVSW +I + +G E+A+ M
Sbjct: 399 NIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEM 458
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMY 341
F M +G+ ++ T LSAC+ G ++ G R + I + F + + +VD+
Sbjct: 459 FKSMQASGLYPDEITFTGLLSACSHSGLVDMG-RYYFDIMISTFRISPGVEHYACMVDLL 517
Query: 342 AKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
+ G + EA +L+ + D++ W A++ I+G E A Q K+++ G G
Sbjct: 518 GRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYV 577
Query: 401 L 401
L
Sbjct: 578 L 578
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 31 ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
+ ++S++ ++T L +Q H I + + S + LI + ++ A+ IF
Sbjct: 370 DATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFF 429
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
KN+ +NV+I LA + + I F M + P+ +T+ + + + L+ +
Sbjct: 430 GMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDM 489
Query: 148 GRGLHCLIVKS-----GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
GR +++ + GVE+ A + D+ + G A + + P K V++W
Sbjct: 490 GRYYFDIMISTFRISPGVEHYAC----MVDLLGRGGFLGEAMTLIQKMPVK---PDVVVW 542
Query: 203 NVLINGCSKIGYLRKAVEL 221
L+ C G L A ++
Sbjct: 543 GALLGACRIYGNLEIAKQI 561
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/491 (30%), Positives = 261/491 (53%), Gaps = 25/491 (5%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISL------IHSSNSTKQLRQIHAQIILHNL 59
+N + + N+ ++ N + E ++S + ++ R+I Q+++ N
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE 184
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ L+S+ + I+ A +FD + +N L+ G S F
Sbjct: 185 IS----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD- 239
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
R+ VR +++++ + A LLS R L L ++ D F + +VQ G
Sbjct: 240 --RMPVR-DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNG 291
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
A ++F+E PEKN+ + WN +I G + + KA ELF MP +N +SW +++
Sbjct: 292 MLDEATRIFEEMPEKNE----VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ + G++ +A LF++MP++ +SW AMI+G++Q+G++E+AL +F +M G N
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ ALS+CA++ ALE G ++H + F G AL+ MY KCG+IE A VF +
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT 467
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EKD+++W MI G A HG ++A+ F+ M + +PD + +L+AC ++G V +
Sbjct: 468 EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGME 526
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F+SM +Y I + KH+T +++LL R G++D+ALN + MP PD WGAL A R H
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586
Query: 479 KDTKIAKIALQ 489
DT++ + A +
Sbjct: 587 GDTELGEKAAE 597
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 204/463 (44%), Gaps = 41/463 (8%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + D A +F+ ++L +NV++ G +N + + + F M V
Sbjct: 97 MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV--- 153
Query: 129 RLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+++ + A + R + ++VK+ + ++ L YVQ G+ A ++F
Sbjct: 154 -VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
D + ++ WN L+ G + L A LF MP ++ SW +I G+ + G L
Sbjct: 208 DSKMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A LFE++P + V +WTAM++GF QNG ++A +F +M + N+ + + ++
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYV 319
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ +E + + + + + +V YA+CGNI+ A ++F E ++D ++W A
Sbjct: 320 QSQQIEKARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI G A G+ E+A+ F KM G + + L++C ++L +
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH--------- 478
F + + ++ + + G +++A + + E D V W + H
Sbjct: 436 FQTGYIAGNALLA-MYGKCGSIEEAFDVFEDITE-KDIVSWNTMIAGYARHGFGKEALAL 493
Query: 479 --------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K + + + S+CS + + M Y + Q G
Sbjct: 494 FESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYG 536
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 49/327 (14%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ G+ A VF+ + S + +N +I+G A ++F MP +++ SW
Sbjct: 70 YMRKGQCESALSVFNGM----RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISW 125
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++ G+++ G+L A LF QMPEK VVSW AM++GF+QNG E+A +F QML
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----V 181
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN------YISCN----DFGLKGAIGTA------- 336
N+ + LSA + G +E R+ + +S N + K + A
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
Query: 337 ----------LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ YA+ G + A +F E +D+ WTAM+ G +G ++A + F+
Sbjct: 242 PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFE 301
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLS 444
+M E + + A++ S Q++ A FD M PS +V +
Sbjct: 302 EM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQM-------PSRNTSSWNTMVTGYA 350
Query: 445 RVGQVDKALNFINKMPETPDFVIWGAL 471
+ G +D+A ++MP+ D + W A+
Sbjct: 351 QCGNIDQAKILFDEMPQR-DCISWAAM 376
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 22/279 (7%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
++ WN I+ + G A+ +F M +++ ++ ++I G++ A ++FE+MP
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
++ ++SW M++G+ +NG A A+F QM + V + + LS A+ G +E +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARK 174
Query: 318 VHNYISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ + + N+ G L+ Y + G IE A +F + ++++W ++ G
Sbjct: 175 IFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKK 229
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKH 435
R + A F +M D + ++T +G + A F+ + D F
Sbjct: 230 RLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA------ 279
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
T +V+ + G +D+A +MPE + V W A+
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNE-VSWNAMIAG 317
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 218/451 (48%), Gaps = 68/451 (15%)
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
TY V + A L + GR +H +I + VE D + L MYV G R ++FD
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD-- 160
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------KNVAS 232
K +E V LWN+L+NG +KIG R+++ LF M + ++V S
Sbjct: 161 --KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218
Query: 233 WVSLIDGFM-------------------------------------------RKGDLKKA 249
W S+I G++ + G+L A
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSA 278
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
++FE M E+ VVSWT+MI G+++ G ++ ++ +F +M + N T+ L ACA +
Sbjct: 279 IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASL 338
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
ALE G +H +I N F L + ALVDMY KCG + A L+F EKDL++WT MI
Sbjct: 339 AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMI 398
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G +HG +AI F +M SG EPD F++IL AC +SG + FF+ MR + I
Sbjct: 399 AGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCI 458
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
EP +H+ +V+LL+R G + KA FI MP PD IWGAL C CR + D K+A+ +
Sbjct: 459 EPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAE 518
Query: 490 SSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L P+ Y + W E
Sbjct: 519 HVFELE---PENTGYYVLLANIYAEAEKWEE 546
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/395 (20%), Positives = 166/395 (42%), Gaps = 53/395 (13%)
Query: 126 RPNRLTYP--FVSKSVASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADM------YVQ 176
R N LTYP F+ +S + L H C + + V + + D + +
Sbjct: 21 RENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCE 80
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
LG R A ++ +++P+ + + + ++ C+ + ++ + ++ +V
Sbjct: 81 LGNLRRAMELINQSPKPDLE--LRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVE----- 133
Query: 237 IDG---------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+DG ++ GDL++ +F+++ + V W ++NG+++ G ++L++F +M
Sbjct: 134 VDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM 193
Query: 288 LDAGVRA-----------NDFTVV---SALSACAKVGALEAGVRVH--------NYISCN 325
+ G+R D V+ S +S G E G+ + N
Sbjct: 194 RELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLAT 253
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++ + L+DMY+K GN+ +A VF E+ +++WT+MI G A G + +++ F
Sbjct: 254 MVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 313
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLL 443
+M P+ IL AC ++ + + F S+ H +V++
Sbjct: 314 HEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF---SLDRHVANALVDMY 370
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ G + A + +PE D V W + H
Sbjct: 371 LKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMH 404
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+ S +++ A+ +F+ +++ + +I G A + F M + + PN
Sbjct: 265 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPN 324
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T + + ASL+ L G+ +H I+++G D V L DMY++ G A +FD
Sbjct: 325 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 384
Query: 189 ETPEKN----------------KSESVLLWNVLIN---------------GCSKIGYLRK 217
PEK+ SE++ +N + N CS G L +
Sbjct: 385 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDE 444
Query: 218 AVELFGMM-------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMIN 269
F MM PK + ++D R G+L KA + + MP E W A++
Sbjct: 445 GWGFFNMMRNNCCIEPKSE--HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 502
Query: 270 G---FSQNGEAEKALAMFFQM 287
G + AEK F++
Sbjct: 503 GCRIYHDVKLAEKVAEHVFEL 523
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 94/244 (38%), Gaps = 17/244 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+IT I+ S + ++ ++IH I+ + + L+ ++ A +F
Sbjct: 324 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 383
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D K+L + V+I G + + I+ F M + P+ +++ + + + LL
Sbjct: 384 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 443
Query: 147 LGRGL------HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G G +C I Y V D+ + G A+K P +
Sbjct: 444 EGWGFFNMMRNNCCIEPKSEHYACIV-----DLLARAGNLSKAYKFIKMMPIE---PDAT 495
Query: 201 LWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+W L+ GC + K E + +N +V L + + ++ +L E++
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555
Query: 258 EKGV 261
+G+
Sbjct: 556 RRGL 559
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/523 (30%), Positives = 265/523 (50%), Gaps = 76/523 (14%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLH 95
+I S S K +++ HA +I + + + + +I S +L +S ++ A F L
Sbjct: 63 IIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLL 122
Query: 96 IFNVLIRGLAENSHFQSCISHFV-FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
IFN LIRGL+++ + I + M + + LT+ ++ K+ + + + G+ H
Sbjct: 123 IFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQ 182
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
++K G F+ L MY G+ A KVFD+ +++ ++ WN LI G S+
Sbjct: 183 VLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRD----LVSWNSLICGYSQCNR 238
Query: 215 LRKAVELFGMMPKKNV-------------ASWV--------------------------S 235
++ ++LF +M + NV S++ S
Sbjct: 239 FKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNS 298
Query: 236 LIDGFMRKG--DLKK-----------------------------AGELFEQMPEKGVVSW 264
LID + R+G DL + A +LF +MP + V+SW
Sbjct: 299 LIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISW 358
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T MI+G +Q + AL +F +M+DA V+ ++ TV S LSAC+ +G L+ G VH Y+
Sbjct: 359 TCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR 418
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+D +G AL+DMY KCG ++ A VF + K+KD ++WT+MI GLA++G + +
Sbjct: 419 HDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFEL 478
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F +M+ G +P F+ IL AC ++G V L +F+SM Y + P +KH+ VV+LLS
Sbjct: 479 FSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLS 538
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G++D+A FI +MP PD V+W L AC+ H++ +A+IA
Sbjct: 539 RSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIA 581
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 240/449 (53%), Gaps = 40/449 (8%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+L++IHA ++ +L SS + T+++ + H +YA +F N ++N +IR
Sbjct: 3 ELKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYK 62
Query: 106 ENSHFQSCISHFVFMLRLS-----VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
N + I+ ML S P++ T+PFV K A L +LG+ +H K G
Sbjct: 63 HNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGP 122
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ + + L +MYV+ A +VF+E
Sbjct: 123 KSNTVIENSLVEMYVKCDSLDDAHRVFEE------------------------------- 151
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
M +++ SW +LI G +R G +++A +FE++ +K + SWTA+++G+++ G A
Sbjct: 152 ----MTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVA 207
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L F +M + ++ ++VS L ACA++GALE G +H Y F + AL+++
Sbjct: 208 LEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEV 267
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAK G+++ +F + E+D+++W+ MI GLA HGR +AI+ F++M + EP+ F
Sbjct: 268 YAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITF 327
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +L+AC ++G + L +F+SM D IEP V+H+ +VNLL G++D+AL I KMP
Sbjct: 328 VGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMP 387
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQ 489
PD IWG L +CR+H + +I IA++
Sbjct: 388 MKPDSDIWGLLSSSCRSHGNLEIVAIAME 416
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 253/497 (50%), Gaps = 44/497 (8%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H+I + ++ +Q+HA +I + +T L++ S +D+AL +FD +
Sbjct: 10 HVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQR 69
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
NL + +I GL++NS F I F M P + + ++ ASL + +G+ +H
Sbjct: 70 NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 129
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
CL +K G+ + FV +L DMY + G A KVF+E P K++ + W +I+G SKI
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSKI 185
Query: 213 GYLRKAVELFGMMPKKNV---------------------------ASWV----------- 234
G +A+ F M + V +S V
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 245
Query: 235 -SLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+L D + + GD++ A +F E + VVS+T +I+G+ + + EK L++F ++ G+
Sbjct: 246 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 305
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
N+FT S + ACA ALE G ++H + +F + + LVDMY KCG +E A
Sbjct: 306 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQ 365
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
F E + + W +++ HG + AI++F++M+ G +P+ F+++LT C ++G
Sbjct: 366 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGL 425
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ L++F SM Y + P +H++ V++LL R G++ +A FIN+MP P+ W +
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485
Query: 473 CACRTHKDTKIAKIALQ 489
ACR H D ++ K+A +
Sbjct: 486 GACRIHGDKEMGKLAAE 502
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 38/271 (14%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T + +I + + +Q Q+HAQ++ N +++ L+ +++A+ F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAF 367
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +N L+ ++ + I F M+ V+PN +T+ +SLL+
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF---------ISLLT 418
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
H +V+ G++Y + + KT G P + ++ +I
Sbjct: 419 GCS--HAGLVEEGLDY-----------FYSMDKTYGV------VPGEEH------YSCVI 453
Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL---KKAGELFEQMPEKGVV 262
+ + G L++A E MP + N W S + GD K A E ++ K
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+ + N ++ + E ++ +M D V+
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/491 (30%), Positives = 261/491 (53%), Gaps = 25/491 (5%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISL------IHSSNSTKQLRQIHAQIILHNL 59
+N + + N+ ++ N + E ++S + ++ R+I Q+++ N
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE 184
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ L+S+ + I+ A +FD + +N L+ G S F
Sbjct: 185 IS----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD- 239
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
R+ VR +++++ + A LLS R L L ++ D F + +VQ G
Sbjct: 240 --RMPVR-DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNG 291
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
A ++F+E PEKN+ + WN +I G + + KA ELF MP +N +SW +++
Sbjct: 292 MLDEATRIFEEMPEKNE----VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ + G++ +A LF++MP++ +SW AMI+G++Q+G++E+AL +F +M G N
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ ALS+CA++ ALE G ++H + F G AL+ MY KCG+IE A VF +
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT 467
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EKD+++W MI G A HG ++A+ F+ M + +PD + +L+AC ++G V +
Sbjct: 468 EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGME 526
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F+SM +Y I + KH+T +++LL R G++D+ALN + MP PD WGAL A R H
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586
Query: 479 KDTKIAKIALQ 489
DT++ + A +
Sbjct: 587 GDTELGEKAAE 597
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 204/463 (44%), Gaps = 41/463 (8%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + D A +F+ ++L +NV++ G +N + + + F M V
Sbjct: 97 MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV--- 153
Query: 129 RLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+++ + A + R + ++VK+ + ++ L YVQ G+ A ++F
Sbjct: 154 -VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
D + ++ WN L+ G + L A LF MP ++ SW +I G+ + G L
Sbjct: 208 DSKMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A LFE++P + V +WTAM++GF QNG ++A +F +M + N+ + + ++
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYV 319
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ +E + + + + + +V YA+CGNI+ A ++F E ++D ++W A
Sbjct: 320 QSQQIEKARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI G A G+ E+A+ F KM G + + L++C ++L +
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH--------- 478
F + + ++ + + G +++A + + E D V W + H
Sbjct: 436 FQTGYIAGNALLA-MYGKCGSIEEAFDVFEDITE-KDIVSWNTMIAGYARHGFGKEALAL 493
Query: 479 --------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K + + + S+CS + + M Y + Q G
Sbjct: 494 FESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYG 536
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 49/327 (14%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ G+ A VF+ + S + +N +I+G A ++F MP +++ SW
Sbjct: 70 YMRKGQCESALSVFNGM----RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISW 125
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++ G+++ G+L A LF QMPEK VVSW AM++GF+QNG E+A +F QML
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----V 181
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN------YISCN----DFGLKGAIGTA------- 336
N+ + LSA + G +E R+ + +S N + K + A
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
Query: 337 ----------LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ YA+ G + A +F E +D+ WTAM+ G +G ++A + F+
Sbjct: 242 PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFE 301
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLS 444
+M E + + A++ S Q++ A FD M PS +V +
Sbjct: 302 EM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQM-------PSRNTSSWNTMVTGYA 350
Query: 445 RVGQVDKALNFINKMPETPDFVIWGAL 471
+ G +D+A ++MP+ D + W A+
Sbjct: 351 QCGNIDQAKILFDEMPQR-DCISWAAM 376
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 22/279 (7%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
++ WN I+ + G A+ +F M +++ ++ ++I G++ A ++FE+MP
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
++ ++SW M++G+ +NG A A+F QM + V + + LS A+ G +E +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARK 174
Query: 318 VHNYISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ + + N+ G L+ Y + G IE A +F + ++++W ++ G
Sbjct: 175 IFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKK 229
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKH 435
R + A F +M D + ++T +G + A F+ + D F
Sbjct: 230 RLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA------ 279
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
T +V+ + G +D+A +MPE + V W A+
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNE-VSWNAMIAG 317
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 248/465 (53%), Gaps = 23/465 (4%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
S +L+Q+ A I L + T +LI S+ S ++ +A S+F + N I N +
Sbjct: 17 SMLELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTM 76
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA-------------SLSLLSL 147
IR A +S+ + + M +V + TY FV K+ + ++S
Sbjct: 77 IRAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISK 136
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +HC ++K G++ D ++ L MY Q G A +FDE + S++ WN++I+
Sbjct: 137 GGEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLFDEISNR----SLVSWNIMIS 192
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
++ + A L MP KNV SW ++I ++R GD++ A +F+ MP++ VSW ++
Sbjct: 193 AYDRVNDSKSADYLLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSL 252
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G + E A+ +F +M +A VR + T++S L ACA+ GALE G ++H +
Sbjct: 253 IAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGH 312
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
++G +G AL++MY+KCG + +A VF + K L W AMI GLA+HG E+A+Q F +
Sbjct: 313 KIEGYLGNALLNMYSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSE 372
Query: 388 MMYSGTE---PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
M SG + P+ FL +L AC + G V A FD M Y I P +KH+ +V+LLS
Sbjct: 373 -MESGLDTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGCIVDLLS 431
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G +++A I P ++W L ACRT + ++AK++ Q
Sbjct: 432 RFGLLEEAHQMIKTAPLQNSAILWRTLLGACRTQGNVELAKVSFQ 476
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 209/366 (57%), Gaps = 35/366 (9%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+ V+PN+ T V K+ AS++ L G+ H I+K G E D V+ L MY
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMY----- 55
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
++ G L A +F M +++ +W ++I G
Sbjct: 56 ------------------------------ARCGSLEDAGHVFDKMSERSTRTWNAMITG 85
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ D+KKA +LF +M E+ VVSWTA+I G++QNG +++L +F QM G++++ F +
Sbjct: 86 HAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIM 145
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S LSACA + ALE G + H Y+ + F L +G+ALVDMYAK G++E A VF + +
Sbjct: 146 GSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ 205
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
++ ++W ++I G A HGR A+ F++M+ +G +P+ F+ +L+AC ++G V +
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGY 265
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F+ M +Y I P V H+T +++LL R G +D+A NFIN MP PD +WGAL ACR H
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325
Query: 480 DTKIAK 485
+T++AK
Sbjct: 326 NTELAK 331
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 59/280 (21%)
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+ GV+ N FT+ + + ACA + +LE G + HNYI F + TALV MYA+CG+
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 347 IEAASLVFG-------------------------------ETKEKDLLTWTAMIWGLAIH 375
+E A VF E E+D+++WTA+I G A +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G ++++ F +M +G + D + ++L+AC ++L F Y ++
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQF-----HAYVVQSGFAL 175
Query: 436 HTVV----VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH------------- 478
VV V++ ++ G ++ A +KMP+ + V W ++ C H
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE-VSWNSIITGCAQHGRGNDAVLLFEQM 234
Query: 479 -----KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K +I+ + + S+CS + + Y Q G
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYG 274
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 145/319 (45%), Gaps = 19/319 (5%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
S+R +I+ + ++ + AL +F + +++ + +I G A+N + ++ F M
Sbjct: 75 STRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR 134
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
+ ++ +R V + A L+ L LGR H +V+SG D V L DMY + G
Sbjct: 135 KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSME 194
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI 237
A +VFD+ P++N+ + WN +I GC++ G AV LF M K N S+V ++
Sbjct: 195 DACQVFDKMPQRNE----VSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVL 250
Query: 238 DGFMRKGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGV 292
G + + F M + G+V +T MI+ + G ++A ++
Sbjct: 251 SACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE----NFINGMP 306
Query: 293 RANDFTVVSA-LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
D +V A L AC G E R+ ++ + + G I L ++YA G + A+
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAG-IYVLLSNIYAAAGQWDDAA 365
Query: 352 LVFGETKEKDLLTWTAMIW 370
V K++ ++ W
Sbjct: 366 KVRKLMKDRGVMKQPGYSW 384
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ HA ++ + + L+ + S++ A +FD +N +N +I G A++
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFV 166
+ F ML+ ++PN +++ V + + L++ GRG L+ ++ G+ D
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL----RKAVELF 222
+ D+ + G A + P + V +W L+ C G R A L
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVE---PDVSVWGALLGACRIHGNTELAKRIAEHLL 338
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
G M + +V L + + G A ++ + M ++GV+
Sbjct: 339 G-MEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVM 377
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/486 (33%), Positives = 240/486 (49%), Gaps = 86/486 (17%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ YA+S+F+ NL I+N ++RG A +S S + +V M+ L PN ++PF+ KS
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG-------------------- 178
A GR +H ++K G D +V L MY + G
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133
Query: 179 -------KTRGAF----KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+RG F KVFDE E++ V+ WN +I G + G +A+ELF M +
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERD----VVSWNAMITGYVENGRYEEALELFKEMMR 189
Query: 228 KNVA--------------------------SWV-----------------SLIDGFMRKG 244
NV SWV +LID + + G
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D++ A LFE + K VVSW +I G++ ++AL +F +ML +G ND T++S L
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKE 359
ACA +GA++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF
Sbjct: 310 ACAHLGAIDIGRWIHVYI---DKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLY 366
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
+ L +W AMI+G A+HGR A F +M + EPD F+ +L+AC +SG + L
Sbjct: 367 RSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQI 426
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM DY + P ++H+ +++LL G +A I+ MP PD VIW +L AC+ H
Sbjct: 427 FKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486
Query: 480 DTKIAK 485
+ ++A+
Sbjct: 487 NLELAE 492
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 181/440 (41%), Gaps = 84/440 (19%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLIS---------------SASLHKSI------ 79
S + ++ RQIHAQ++ + T LIS AS H+ +
Sbjct: 77 SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136
Query: 80 --------DY--ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
D+ A +FD T +++ +N +I G EN ++ + F M+R +VRP+
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKS----GVEYDAFVRVHLADMYVQLGKTRGAFK 185
T V + A + LGR +H + G + L D+Y + G AF
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------- 228
+F+ K+ V+ WN LI G + ++A+ LF M +
Sbjct: 257 LFEGLSCKD----VVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312
Query: 229 -----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ W+ SLID + + GD++ A ++F M + + SW
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSW 372
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
AMI GF+ +G A A +F +M V +D T V LSAC+ G L+ G ++ ++
Sbjct: 373 NAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMT- 431
Query: 325 NDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D+ L + ++D+ G EA ++ E D + W +++ HG E A
Sbjct: 432 QDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELA 491
Query: 382 IQYFKKMMYSGTEPDGTVFL 401
+ +K++ E G+ L
Sbjct: 492 ESFAQKLIKIEPENSGSYVL 511
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/342 (39%), Positives = 190/342 (55%), Gaps = 7/342 (2%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G LHC ++K G D +V+ L MY Q G+ A K FDE P KN + WN L+
Sbjct: 173 GAELHCRVLKLGCGQDRYVQNALVSMYGQFGRLGEARKAFDEMPVKN----AVSWNALVV 228
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G L+ A + P++N++ W S I +R GDL +A +F MPE+ V+SW ++
Sbjct: 229 AHGVSGDLQGAERVSQATPERNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSL 288
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+G+++ G +AL +F M + + TVVSAL ACA+VG LE G +H+Y+
Sbjct: 289 ISGYAKLGMYSRALDVFRDMWKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGI 348
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
G +G ALVDMYAKCGN++ A VF KD+ W MI GL++HG A++ F
Sbjct: 349 EADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDL 408
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M EPD FL +LTAC +SG + +F SM DY I PS+KH+ ++N+L R G
Sbjct: 409 M---NIEPDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCRYG 465
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V +A IN MP + V+W + ACR H IA A+
Sbjct: 466 KVHEAYQMINDMPVKANSVLWKMVMAACRVHGHFDIADRAVH 507
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 249/507 (49%), Gaps = 50/507 (9%)
Query: 30 TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
T+ I+ L+ + + L +QIH +I +++ I ++S S + ++ A ++F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVF 290
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS---------- 136
D NL +N +I A N F M S++P+ +T+ +
Sbjct: 291 DSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYE 350
Query: 137 -------------------------KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
++V L +LG+ +H I++S +EYD +V L
Sbjct: 351 NVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLV 410
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----K 227
DMY++ A VF T KN + WN LI+G + G A +L M K
Sbjct: 411 DMYIKNDCLEKAEVVFHHTKNKN----ICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIK 466
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAM 283
++ +W SL+ G+ G ++A + ++ G VVSWTAMI+G QN AL
Sbjct: 467 ADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQF 526
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F QM + V+ N T+ + L ACA L+ G +H + + F I TAL+DMY+K
Sbjct: 527 FSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSK 586
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G ++ A VF KEK L W M+ G AI+G E+ F M +G PD F A+
Sbjct: 587 GGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTAL 646
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+ C SG V +FDSM+ DY I P+++H++ +V+LL + G +D+AL+FI+ MP+
Sbjct: 647 LSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKA 706
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQS 490
D IWGA+ ACR HKD KIA+IA ++
Sbjct: 707 DASIWGAVLAACRLHKDIKIAEIAARN 733
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/434 (20%), Positives = 177/434 (40%), Gaps = 43/434 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
++HA ++ ++ LI+ ID A +FD + ++N ++ +
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSE 211
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
++ + M S + T + ++ L L+ G+ +H +++ G + +
Sbjct: 212 RWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
+ MY + + A VFD T + N
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHN---------------------------------- 297
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMF 284
+ASW S+I + G L A +LF +M + +++W ++++G G E L
Sbjct: 298 -LASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNI 356
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ AG + + ++ SAL A ++G G +H YI + + T+LVDMY K
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKN 416
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
+E A +VF TK K++ W ++I G G ++ A + +M G + D + +++
Sbjct: 417 DCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLV 476
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-- 462
+ SG + AL + ++ + P+V T +++ + AL F ++M E
Sbjct: 477 SGYSMSGCSEEALAVINRIK-SLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENV 535
Query: 463 -PDFVIWGALFCAC 475
P+ L AC
Sbjct: 536 KPNSTTISTLLRAC 549
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 8/253 (3%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
G + +VF E +K V++ C + L +E+ + K+ +V
Sbjct: 110 GDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLS 169
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+LI+ + + + +A ++F++ P + W ++ ++ E AL + +M A +
Sbjct: 170 CALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAK 229
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAAS 351
A D T+V L AC K+ AL G ++H Y+ FG +I ++V MY++ +E A
Sbjct: 230 ATDGTIVKLLQACGKLRALNEGKQIHGYVI--RFGRVSNTSICNSIVSMYSRNNRLELAR 287
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF T++ +L +W ++I A++G A F++M S +PD + ++L+ G
Sbjct: 288 AVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQG 347
Query: 412 QVKLALNFFDSMR 424
+ L S++
Sbjct: 348 SYENVLTNIRSLQ 360
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 5/187 (2%)
Query: 225 MPKKN--VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKAL 281
MPKK V S++ ++ GD + A ++F + + W + + F+ G++ + L
Sbjct: 57 MPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEIL 116
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F ++ D GV+ + + L C + L G+ VH + F + + AL+++Y
Sbjct: 117 EVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLY 176
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVF 400
KC I+ A+ VF ET ++ W ++ R+E A++ ++M S DGT+
Sbjct: 177 EKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTI- 235
Query: 401 LAILTAC 407
+ +L AC
Sbjct: 236 VKLLQAC 242
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 252/497 (50%), Gaps = 44/497 (8%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H+I + ++ +Q+HA +I + +T L++ S +D+AL +FD +
Sbjct: 10 HVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQR 69
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
NL + +I GL++NS F I F M P + + ++ ASL + +G+ +H
Sbjct: 70 NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 129
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
CL +K G+ + FV +L DMY + G A KVF+E P K++ + W +I+G SKI
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSKI 185
Query: 213 GYLRKAVELFGMMPKKNV---------------------------ASWV----------- 234
G +A+ F M + V +S V
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 245
Query: 235 -SLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+L D + + GD++ A +F E + VVS+T +I+G+ + + EK L++F ++ G+
Sbjct: 246 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 305
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
N+FT S + ACA ALE G ++H + +F + + LVDMY KCG +E A
Sbjct: 306 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 365
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
F E + + W +++ HG + AI+ F++M+ G +P+ F+++LT C ++G
Sbjct: 366 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 425
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ L++F SM Y + P +H++ V++LL R G++ +A FIN+MP P+ W +
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485
Query: 473 CACRTHKDTKIAKIALQ 489
ACR H D ++ K+A +
Sbjct: 486 GACRIHGDKEMGKLAAE 502
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 107/271 (39%), Gaps = 38/271 (14%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T + +I + + +Q Q+HAQ++ N +++ L+ ++ A+ F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 367
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +N L+ ++ + I F M+ V+PN +T+ +SLL+
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF---------ISLLT 418
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
H +V+ G++Y + + KT G P + ++ +I
Sbjct: 419 GCS--HAGLVEEGLDY-----------FYSMDKTYGV------VPGEEH------YSCVI 453
Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL---KKAGELFEQMPEKGVV 262
+ + G L++A E MP + N W S + GD K A E ++ K
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+ + N ++ + E ++ +M D V+
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 266/511 (52%), Gaps = 39/511 (7%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS------RITTQLISSAS 74
S +P + + ++S + + +S Q HA ++ A+S + L S+++
Sbjct: 2 SRRRPPHALAT--LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASA 59
Query: 75 LHKSIDYALSIFDHFTPK-NLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ D+A S+F H + + H F N L+R A S +S + +F M R +V P+ T
Sbjct: 60 SPSAADHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYT 118
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--- 188
+P V K+ +G +H V++G++ D F R L Y ++G R KVFD
Sbjct: 119 FPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV 178
Query: 189 -----------------------ETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGM 224
+ ++ + W +I+G ++ G + +A ELF
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ 238
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP +++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G+ + GE +AL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ML G++ + V A++ACA++GALE G +H+Y+ + TAL+DMY KC
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G ++ A L+F +K ++TW MI GL HG AI+ F +M D LA+L
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
T+C ++G V L F M D +EP V+H+ +++LL R G+VD+A N I MP P
Sbjct: 419 TSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPT 478
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+WG+L +CR+H+ ++A+++++ SL
Sbjct: 479 PELWGSLLASCRSHRCVELAELSVERLASLG 509
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/506 (30%), Positives = 252/506 (49%), Gaps = 46/506 (9%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
+ + ++ K L +HA I+ ++ + + L+ + YA +FD ++ ++
Sbjct: 118 VAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLW 177
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N +I GL +N F I F M+ VR + T V + A L L +G G+ CL +K
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
G + +V L +Y + G A +F + ++ +N +I+G + G
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLF----RRINRPDLIAYNAMISGFTANGGTEC 293
Query: 218 AVELF----------------GMMPKKNVASWVSL---IDGFMRK--------------- 243
+V+LF G++P + + L I GF K
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTA 353
Query: 244 -----GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
++ A LF++ PEK VV+W AMI+G++QNG E A+++F +M+ N T
Sbjct: 354 IYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVT 413
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ + LSACA++G+L G VH+ I + + TALVDMYAKCGNI A +F
Sbjct: 414 ITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS 473
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EK+ +TW MI+G +HG +A++ + +M++ G P FL++L AC ++G V
Sbjct: 474 EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEE 533
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F +M Y IEP ++H+ +V++L R GQ++KAL FI KMP P +WG L AC H
Sbjct: 534 IFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIH 593
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSY 504
KDT IA++A + L+ P ++ Y
Sbjct: 594 KDTDIARLASERLFELD---PGSVGY 616
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 223/491 (45%), Gaps = 59/491 (12%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLIS-SASLHKSID 80
S ++ + SLI+ +++ L Q HAQ IL+ +L +++T +L SA+ H
Sbjct: 7 SGKLSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRH---- 62
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSV 139
A ++F ++ +FNVL+RG + N S IS + + R ++ P+ TY F +
Sbjct: 63 -ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC 121
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
++ L L LH + G + FV L D+Y + + A KVFD PE++
Sbjct: 122 SNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERD----T 174
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNV---ASWVS--------------------- 235
+LWN +ING K +++LF M V +S V+
Sbjct: 175 VLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCL 234
Query: 236 ---------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
LI + + GD+ A LF ++ ++++ AMI+GF+ NG E +
Sbjct: 235 ALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECS 294
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+ +F ++L +G R + T+V + + G L +H + + L + TA +
Sbjct: 295 VKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAI 354
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y K I+ A +F E+ EK ++ W AMI G +G E AI FK+MM + P+
Sbjct: 355 YNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTI 414
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
IL+AC G + + + +EP++ T +V++ ++ G + +A + M
Sbjct: 415 TTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS 473
Query: 461 ETPDFVIWGAL 471
E + V W +
Sbjct: 474 EK-NTVTWNTM 483
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 264/545 (48%), Gaps = 77/545 (14%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
TTN + P+N I + ++ S ++ +QL+QI A++ L + + +++I+ +L
Sbjct: 142 TTNKPKWNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCAL 201
Query: 76 HKSID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
S D YA +IF+ N ++N +IRG S FV+M +L V + ++
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261
Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
F K+ + G ++C++ K G + + VR L Y + G + A +VFDE+ +K
Sbjct: 262 FALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDK 321
Query: 194 NKSESVLLWNVLING-----------------------------------CSKIGYLRKA 218
+ V+ W +I+G CS +G L
Sbjct: 322 D----VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMG 377
Query: 219 VELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFEQM------------------ 256
+ + +KN+ +S L+D +++ L A ELF++M
Sbjct: 378 KRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKC 437
Query: 257 -------------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
P K V W+AMI G+SQN + +++L +F +M++ GV + T+VS L
Sbjct: 438 GDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVL 497
Query: 304 SACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
SAC ++ L G +H Y L + A+VDMYAKCG+I+AA+ VF E++L
Sbjct: 498 SACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNL 557
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W MI G A +GR +QAI F +M G EP+ F+++LTAC + G + +FD+
Sbjct: 558 ISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDN 617
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M Y I+P H+ +V+LL R G +++A I MP P WGAL ACR H + +
Sbjct: 618 MERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVE 677
Query: 483 IAKIA 487
+A+++
Sbjct: 678 LARLS 682
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 37/324 (11%)
Query: 184 FKVFDETPEKNKSESVLLWN---VLINGCSKIGYLRK---AVELFGMMPKKNVASWVSLI 237
F P+ N +V++ N +++ CS + L++ + L G++ S V
Sbjct: 139 FSFTTNKPKWNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAF 198
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
GDL A +F ++ + W MI G+ + A + F M V +
Sbjct: 199 CALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSR 258
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+ V AL AC + + G V+ + F + + L+ YA+ G ++ A VF E+
Sbjct: 259 SFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDES 318
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+KD++TWT MI G A H E+A++ F+ M+ S EP+ +A+++AC G +++
Sbjct: 319 SDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGK 378
Query: 418 NFFD-----SMR-------------------------FDYFIEPSVKHHTVVVNLLSRVG 447
+ +MR FD V T +VN ++ G
Sbjct: 379 RVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCG 438
Query: 448 QVDKALNFINKMPETPDFVIWGAL 471
++ A F ++ P + V W A+
Sbjct: 439 DLESARRFFDQTPRK-NAVCWSAM 461
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 266/511 (52%), Gaps = 39/511 (7%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS------RITTQLISSAS 74
S +P + + ++S + + +S Q HA ++ A+S + L S+++
Sbjct: 2 SRRRPPHALAT--LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASA 59
Query: 75 LHKSIDYALSIFDHFTPK-NLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ D+A S+F H + + H F N L+R A S +S + +F M R +V P+ T
Sbjct: 60 SPSAADHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYT 118
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--- 188
+P V K+ +G +H V++G++ D F R L Y ++G R KVFD
Sbjct: 119 FPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV 178
Query: 189 -----------------------ETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGM 224
+ ++ + W +I+G ++ G + +A ELF
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ 238
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP +++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G+ + GE +AL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ML G++ + V A++ACA++GALE G +H+Y+ + TAL+DMY KC
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G ++ A L+F +K ++TW MI GL HG AI+ F +M D LA+L
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
T+C ++G V L F M D +EP V+H+ +++LL R G+VD+A N I MP P
Sbjct: 419 TSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPT 478
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+WG+L +CR+H+ ++A+++++ SL
Sbjct: 479 PELWGSLLASCRSHRCVELAELSVERLASLG 509
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 251/500 (50%), Gaps = 45/500 (9%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S N T+T ++SL + + Q++AQI+++ L S + + S+ A
Sbjct: 11 SRNPTKT-LLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKA 69
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+H T +NLH +N ++ ++N F + F ML+ + F K+ LSL
Sbjct: 70 FNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF 129
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+ H L +K +E D +V L ++Y +LG A KVF+E P KN ++W V+
Sbjct: 130 QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS----VIWGVM 185
Query: 206 ING-----------------------------------CSKIGYLRKAVELFGMMPKKNV 230
I G C + ++ G+ KKN
Sbjct: 186 IKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNF 245
Query: 231 AS-----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
SL+D +M+ G L A +LFE++ + VV W+A+I GF++NG A ++++MF
Sbjct: 246 IDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFR 305
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QML V N T S + AC+ +G+L+ G VH Y+ N L T+ +DMYAKCG
Sbjct: 306 QMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCG 365
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
I A VF + EK++ +W+ MI G +HG +A+ F +M P+ F+++L+
Sbjct: 366 CIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLS 425
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC +SG+++ + F SM DY I P +H+ +V+LL R G++D+AL+FIN MP P
Sbjct: 426 ACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGA 485
Query: 466 VIWGALFCACRTHKDTKIAK 485
WGAL ACR H+ ++A+
Sbjct: 486 SAWGALLGACRIHRRAELAE 505
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 48/364 (13%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S++ A +F+ KN I+ V+I+G S F M R + + +
Sbjct: 163 SLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 222
Query: 138 SVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ ++ G+ H L +K ++ + F++ L DMY++ G A K+F+E ++
Sbjct: 223 ACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRD-- 280
Query: 197 ESVLLWNVLING-----------------------------------CSKIGYLRKAVEL 221
V++W+ +I G CS +G L++ +
Sbjct: 281 --VVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 338
Query: 222 FGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
G M + +V ++ S ID + + G + A +F Q+PEK V SW+ MINGF +G
Sbjct: 339 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 398
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
+AL +F++M N T VS LSAC+ G +E G +S D+G+
Sbjct: 399 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMS-RDYGITPVEEHYA 457
Query: 336 ALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+VD+ + G I EA S + E W A++ IH R E A + KK++ ++
Sbjct: 458 CMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESD 517
Query: 395 PDGT 398
G
Sbjct: 518 QSGV 521
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 246/446 (55%), Gaps = 12/446 (2%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q HA IL++L + + + +I+ S I+ A +F K++ +N+LI ++
Sbjct: 303 KQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQH 362
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ M ++R + +T + + A S + LG+ HC ++ +E D V
Sbjct: 363 HQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVA 422
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
+ DMY + + A KVFD T E++ ++LWN L+ +++G +A++LF M
Sbjct: 423 NSIIDMYAKCERIDDARKVFDSTTERD----LVLWNTLLAAYAQVGLSGEALKLFYQMQF 478
Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEK 279
NV SW S+I GF+R G + +A ++F QM G +++WT +I+G +Q+G +
Sbjct: 479 DSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYE 538
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
A+ F +M +AG+R + ++ S L AC + +L G +H +I+ ++F L + T+LVD
Sbjct: 539 AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVD 598
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MYAKCG+I+ A VF K+L + AMI A+HG+ +A+ FK + G EPD
Sbjct: 599 MYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSIT 658
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
F +IL+AC ++G V LN F M + + P ++H+ VV+LLSR G +D+AL I M
Sbjct: 659 FTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTM 718
Query: 460 PETPDFVIWGALFCACRTHKDTKIAK 485
P PD I G+L ACR H + ++ +
Sbjct: 719 PFQPDAHILGSLLTACREHHEIELGE 744
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 220/472 (46%), Gaps = 49/472 (10%)
Query: 48 RQIHAQIILH-NLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + + FA + + T+L+ + + A+ +F +N+ + ++
Sbjct: 99 QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQC 158
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F+ M V P+ P V K+ SL L+ LG+G+H ++K G F
Sbjct: 159 RMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 218
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V L DMY + G A KVFD EKN V+ WN +I G + G ++A+++F
Sbjct: 219 VSSSLVDMYGKCGVLEDARKVFDSMVEKN----VVTWNSMIVGYVQNGLNQEAIDVFYDM 274
Query: 223 ---GMMPKK-NVASWVS-------LIDG-------------------------FMRKGDL 246
G+ P + VAS++S LI+G + + G +
Sbjct: 275 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 334
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F +M EK VV+W +I+ + Q+ + KAL M M +R + T+ S LSA
Sbjct: 335 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 394
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A ++ G H Y + + +++DMYAKC I+ A VF T E+DL+ W
Sbjct: 395 AVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWN 454
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M + P+ + +++ +GQV A + F M+
Sbjct: 455 TLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL 514
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
F +P++ T +++ L++ G +A+ F KM E P ++ AC
Sbjct: 515 GF-QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLAC 565
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 13/245 (5%)
Query: 240 FMRKGDLKK-AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
F K D + A LF ++ + V SW A++ + G +E AL F +M + GV ++F
Sbjct: 125 FYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFV 184
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ + L AC + + G VH Y+ FG + ++LVDMY KCG +E A VF
Sbjct: 185 LPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMV 244
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-----CWYSGQV 413
EK+++TW +MI G +G ++AI F M G EP + L+A G+
Sbjct: 245 EKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQ 304
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
A+ +S+ D + S ++N S+VG ++ A ++M E D V W L
Sbjct: 305 GHAIAILNSLDLDNILGSS------IINFYSKVGLIEDAELVFSRMLEK-DVVTWNLLIS 357
Query: 474 ACRTH 478
+ H
Sbjct: 358 SYVQH 362
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 241/450 (53%), Gaps = 11/450 (2%)
Query: 45 KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
K L ++H++I+++ +L + +L+ + S A IFD KN+ FNV+IR
Sbjct: 52 KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
N+ + +S F ML + P+ T+P V K+ + L L +G +H IVK G++ +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
F+ L MY + G R A KV D+ P ++ V+ WN ++ G ++ G A+E+
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRD----VVSWNSMVAGYAQSGQFDDALEICK 227
Query: 224 MMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
M N+ + +S + + +++ +FE+M +K ++SW MI + N
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMP 287
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+A+++F QM + G++ + T+ S L AC + AL G R+H YI + + AL
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENAL 347
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG +E A VF + + +D+++WT+M+ G+ A+ F KM+ SG PD
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+++L+AC ++G + ++F M Y I P ++H +V+L R G+V++A +FI
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIK 467
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+MP P+ +WGAL ACR H I +A
Sbjct: 468 QMPMEPNERVWGALLSACRVHSKMDIGLVA 497
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 241/450 (53%), Gaps = 11/450 (2%)
Query: 45 KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
K L ++H++I+++ +L + +L+ + S A IFD KN+ FNV+IR
Sbjct: 52 KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
N+ + +S F ML + P+ T+P V K+ + L L +G +H IVK G++ +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
F+ L MY + G R A KV D+ P ++ V+ WN ++ G ++ G A+E+
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRD----VVSWNSMVAGYAQSGQFDDALEICK 227
Query: 224 MMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
M N+ + +S + + +++ +FE+M +K ++SW MI + N
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMP 287
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+A+++F QM + G++ + T+ S L AC + AL G R+H YI + + AL
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENAL 347
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG +E A VF + + +D+++WT+M+ G+ A+ F KM+ SG PD
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+++L+AC ++G + ++F M Y I P ++H +V+L R G+V++A +FI
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIK 467
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+MP P+ +WGAL ACR H I +A
Sbjct: 468 QMPMEPNERVWGALLSACRVHSKMDIGLVA 497
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 255/478 (53%), Gaps = 41/478 (8%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S L QIHA+II L + + ISS+S S + S+F+ +++N LI+
Sbjct: 22 SEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSLSY--SSSVFERVPYPGTYLWNHLIK 79
Query: 103 GLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
G + F +S + M+R RP+ T+P V K ++ + +G +H L+++ G +
Sbjct: 80 GYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFD 139
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
D + D Y + A KVF E PE+N V+ W LI K G L +A +
Sbjct: 140 KDVVLGTSFVDFYGKCKDLCSARKVFGEMPERN----VVSWTALIVAYVKSGELEEAKRM 195
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS--------- 272
F +MP++N+ +W +L+DG ++ GDL A +LF++MP++ ++S+T+MI+G++
Sbjct: 196 FDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSAR 255
Query: 273 ----------------------QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
QNG+ +A +F +M V+ ++F +V +SAC+++G
Sbjct: 256 DLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMG 315
Query: 311 ALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
E +V +Y+ S N F I AL+DM AKCG+++ A+ +F E ++DL+++ +M
Sbjct: 316 CFELCEKVDSYLHQSMNKFSSHYVI-PALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSM 374
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G+AIHG +A++ F+KM+ G PD F IL C S V+ L +F+ MR +Y
Sbjct: 375 MEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYS 434
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
I S H++ +VNLLSR G++ +A I MP WG+L C H +T+IA++
Sbjct: 435 ILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEV 492
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 232/440 (52%), Gaps = 35/440 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++H ++ L ++ + L+ SL +D A +FD +++ +N++I G
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ I V M R V P +T V + C VK + D R
Sbjct: 215 KEYEESIELLVEMERNLVSPTSVTLLLVLSA--------------CSKVK---DKDLCKR 257
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
VH YV KT + + L N L+N + G + AV +F M
Sbjct: 258 VH---EYVSECKTEPSLR---------------LENALVNAYAACGEMDIAVRIFRSMKA 299
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V SW S++ G++ +G+LK A F+QMP + +SWT MI+G+ + G ++L +F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
AG+ ++FT+VS L+ACA +G+LE G + YI N +G AL+DMY KCG
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCS 419
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A VF + ++D TWTAM+ GLA +G+ ++AI+ F +M +PD +L +L+AC
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG V A FF MR D+ IEPS+ H+ +V++L R G V +A + KMP P+ ++
Sbjct: 480 NHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539
Query: 468 WGALFCACRTHKDTKIAKIA 487
WGAL A R H D +A++A
Sbjct: 540 WGALLGASRLHNDEPMAELA 559
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 3/243 (1%)
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G + A +LF ++PE VV W MI G+S+ + + ++ ML GV + T L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 304 SACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ + G AL G ++H ++ G + ALV MY+ CG ++ A VF ++D+
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+W MI G YE++I+ +M + P L +L+AC L +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+ + EPS++ +VN + G++D A+ M + D + W ++ + K
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM-KARDVISWTSIVKGYVERGNLK 319
Query: 483 IAK 485
+A+
Sbjct: 320 LAR 322
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 234/440 (53%), Gaps = 35/440 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++H ++ L ++ + L+ SL +D A +FD +++ +N++I G
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ I V M R V P SV L +LS C VK + D R
Sbjct: 215 KEYEESIELLVEMERNLVSPT---------SVTLLLVLS-----ACSKVK---DKDLCKR 257
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
VH YV KT + + L N L+N + G + AV +F M
Sbjct: 258 VH---EYVSECKTEPSLR---------------LENALVNAYAACGEMDIAVRIFRSMKA 299
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V SW S++ G++ +G+LK A F+QMP + +SWT MI+G+ + G ++L +F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
AG+ ++FT+VS L+ACA +G+LE G + YI N +G AL+DMY KCG
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCS 419
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A VF + ++D TWTAM+ GLA +G+ ++AI+ F +M +PD +L +L+AC
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG V A FF MR D+ IEPS+ H+ +V++L R G V +A + KMP P+ ++
Sbjct: 480 NHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539
Query: 468 WGALFCACRTHKDTKIAKIA 487
WGAL A R H D +A++A
Sbjct: 540 WGALLGASRLHNDEPMAELA 559
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 3/243 (1%)
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G + A +LF ++PE VV W MI G+S+ + + ++ ML GV + T L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 304 SACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ + G AL G ++H ++ G + ALV MY+ CG ++ A VF ++D+
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+W MI G YE++I+ +M + P L +L+AC L +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+ + EPS++ +VN + G++D A+ M + D + W ++ + K
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM-KARDVISWTSIVKGYVERGNLK 319
Query: 483 IAK 485
+A+
Sbjct: 320 LAR 322
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/484 (30%), Positives = 245/484 (50%), Gaps = 37/484 (7%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
NR+ + S+ S+ + + I S++ S S + L +IHAQI++ + I
Sbjct: 3 NRIVPILRENATAISAIGRSSRVRQQFIFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYIL 62
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
L+S S+ A +F+ T + ++N +I+G + + I F M V
Sbjct: 63 NHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVE 122
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
N TY F+ + L G +H ++ +G + +VR +L ++Y G G F
Sbjct: 123 ANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYAN-GGDGGDFD- 180
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
L++A LF MP NV W SL+ G++R+GD
Sbjct: 181 ----------------------------LKRARYLFDEMPDSNVVGWNSLLAGYVRRGDF 212
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A ++F++MPE+ V +WT M+ GF+QNG+ + AL++F QM AGV + +V+ALSAC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272
Query: 307 AKVGALEAGVRVHNYIS----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
A++G L G +H Y+ + ++ AL+ MYA CG ++ A VF E +++
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNT 332
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG---TEPDGTVFLAILTACWYSGQVKLALNF 419
++W+++I G A G +AI+ F+ M+ SG PD F+ LTAC ++G + +
Sbjct: 333 VSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRL 392
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM + + P ++H+ +V+LLSR G + +AL+ I MP P+ +WGAL CR HK
Sbjct: 393 FQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHK 452
Query: 480 DTKI 483
+ +I
Sbjct: 453 NDEI 456
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 273/531 (51%), Gaps = 76/531 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFTP 91
+ L+ S S KQ QIHAQ I++ L ++LIS SL S +D++ +F
Sbjct: 13 LCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDC 72
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRG 150
NL ++N +IRG + + + + I ++ M+ + P N T+PF+ S A LS L G
Sbjct: 73 PNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132
Query: 151 LHCLIVKSGVE------------YDAFVRVHLA----------DM---------YVQLGK 179
+H I+K G E Y F ++LA D+ Y ++ +
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192
Query: 180 TRGAFKVFDET------PE-------------------------------KNKSESVLLW 202
A +F E P+ ++ ++LL
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLK 252
Query: 203 NVLINGCSKIGYLRKAVELFGMM-PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ +++ +K G + A +F M K+ A+W S++ G+ R G++ A +LF M E+ V
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-HN 320
+SWTAMI+G+SQ G+ +AL +F +M G++ ++ T+V+ LSACA++GA + G R+ H
Sbjct: 313 ISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQ 372
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRY 378
YI F + A++DMYAKCG+I++A +F + K + +MI GLA HG
Sbjct: 373 YIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLG 432
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
E AI F++++ +G +PD F+ +L AC +SG ++ F+SM Y I+P ++H+
Sbjct: 433 ETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGC 492
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V+LL R G +++A + + KMP + VIW AL ACRTH + KI +IA Q
Sbjct: 493 MVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 543
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/522 (28%), Positives = 260/522 (49%), Gaps = 43/522 (8%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N+ A + N T ++ L+ S + R +H ++ +++ I
Sbjct: 25 NKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIG 84
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI + S+ + A +FD + K++ + +I AEN F + F M +
Sbjct: 85 TALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFK 144
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V K+ L G+ +HC ++K+ E D +V V L ++Y + G A++
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKKNVASWV------ 234
F + P+ + V+ W+ +I+ ++ G KA+E+F M P + S V
Sbjct: 205 FGDMPKND----VIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASAD 260
Query: 235 ---------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+L+ + + G ++++ ELFE + ++ VSW +
Sbjct: 261 IESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTI 320
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I + Q G+ E+AL++F ML V+A + T S L ACA + ALE G++VH + +
Sbjct: 321 IVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIY 380
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
G A+G AL+DMYAKCG+I+ A +F +D ++W A+I G ++HG +AI+ F
Sbjct: 381 GQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNL 440
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M + +PD F+ +L+AC +G++ +F SM+ DY IEP ++H+T +V L+ R G
Sbjct: 441 MKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSG 500
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+D+A+ FI +P P +IW AL AC H D ++ +I+ Q
Sbjct: 501 NLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQ 542
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 199/490 (40%), Gaps = 71/490 (14%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV----A 140
+FD +N F LI G A+++ F I F RL + L PFV +V
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKF---IEAFELFARLHGEGHELN-PFVFTTVLKLLV 57
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
S+ LGR +H ++K G + F+ L D Y G A +VFDE K+ ++
Sbjct: 58 SMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKD----MV 113
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMP---------------------------------- 226
W +I ++ +A+E F M
Sbjct: 114 SWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSV 173
Query: 227 -----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
++++ V L++ + R GD A F MP+ V+ W+ MI+ F+Q+G++EKAL
Sbjct: 174 LKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKAL 233
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F QM A V N FT S L A A + +L+ +H + + AL+ Y
Sbjct: 234 EIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACY 293
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG IE + +F +++ ++W +I G E+A+ F M+ + +
Sbjct: 294 AKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYS 353
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+IL AC ++L L + V ++++ ++ G + A F+ M +
Sbjct: 354 SILRACATLAALELGLQVH-CLTAKTIYGQDVAVGNALIDMYAKCGSIKDA-RFMFDMLD 411
Query: 462 TPDFVIWGALFCACRTH-------------KDTK-----IAKIALQSSCSLNLSIPQAMS 503
D V W A+ C H K+TK + + + S+CS + +
Sbjct: 412 LRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQ 471
Query: 504 YCQTFMQQKG 513
Y + Q G
Sbjct: 472 YFTSMKQDYG 481
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 247/474 (52%), Gaps = 36/474 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ T T +++L + + Q RQIHA +I N+ + + T+L+ S ++YA IF
Sbjct: 478 DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 537
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ +N + +N +I G +N Q + F M ++P+ + + S SLS
Sbjct: 538 NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR LH IV++ +E + ++V L DMY + G A+KV+D+T +K+ V+L NV++
Sbjct: 598 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKD----VILNNVMV 653
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ G A LF M ++N A W S++ G+ KG LKK
Sbjct: 654 SAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG-LKK------------------ 694
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
++ F +ML++ + + T+V+ ++ C+ + ALE G ++H+ I
Sbjct: 695 ------------ESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKG 742
Query: 327 F-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F + TALVDMY+KCG I A VF K++++W AMI G + HG ++A+ +
Sbjct: 743 FVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILY 802
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
++M G P+ FLAIL+AC ++G V+ L F SM+ DY IE +H+T +V+LL R
Sbjct: 803 EEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGR 862
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
G+++ A F+ KMP P+ WGAL ACR HKD + ++A Q L+ P
Sbjct: 863 AGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNP 916
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/510 (24%), Positives = 216/510 (42%), Gaps = 76/510 (14%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H+++I + + LI + + L +FD +N +N +I A+
Sbjct: 296 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 355
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
HF + F+ M + NR + + A L+ + GR LH +V++ + D +
Sbjct: 356 GHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILG 415
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L DMY + G A +VF E+N+ + +N L+ G + G +A+EL+
Sbjct: 416 SALVDMYSKCGMVEEAHQVFRSLLERNE----VSYNALLAGYVQEGKAEEALELYHDMQS 471
Query: 223 --GMMPK---------------------------------KNVASWVSLIDGFMRKGDLK 247
G+ P KN+ L+ + G L
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 531
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A E+F +M E+ SW +MI G+ QNGE ++AL +F QM G++ + F++ S LS+C
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---- 363
+ + G +HN+I N +G + LVDMYAKCG+++ A V+ +T +KD++
Sbjct: 592 SLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNV 651
Query: 364 ---------------------------TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
W +++ G A G +++ +F +M+ S E D
Sbjct: 652 MVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYD 711
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+ I+ C ++ + F+ SV T +V++ S+ G + KA
Sbjct: 712 VLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF 771
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ M + V W A+ H +K A I
Sbjct: 772 DNM-NGKNIVSWNAMISGYSKHGCSKEALI 800
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 122/507 (24%), Positives = 225/507 (44%), Gaps = 52/507 (10%)
Query: 24 KPSNNITETHIISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
KP++++ SLI SNS ++ + IH Q+I + + + T+++ + +D
Sbjct: 64 KPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123
Query: 81 ---YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
YA +F+ +NL +N +I A + + + M ++ T+P V K
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ ++ + R L +VK+G+ + FV L D Y + G A DE +
Sbjct: 184 ACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI----EGT 239
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNVA 231
SV+ WN +I G KI +A +F M K K V
Sbjct: 240 SVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVH 299
Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S + +LID + + D + ++F++M E+ V+W ++I+ +Q G
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFN 359
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
AL +F +M ++G ++N F + S L A A + + G +H ++ N +G+ALV
Sbjct: 360 DALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALV 419
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDG 397
DMY+KCG +E A VF E++ +++ A++ G G+ E+A++ + M G +PD
Sbjct: 420 DMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQ 479
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F +LT C + I ++ T +V++ S G+++ A N
Sbjct: 480 FTFTTLLTLCANQRNDNQGRQIHAHL-IRANITKNIIVETELVHMYSECGRLNYAKEIFN 538
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIA 484
+M E + W ++ + + +T+ A
Sbjct: 539 RMAERNAYS-WNSMIEGYQQNGETQEA 564
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 187/401 (46%), Gaps = 44/401 (10%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
+RQ+ + ++ L + + L+ + +D A++ D ++ +N +I G +
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
++ F ML++ V P+ T+ + +L G+ +H ++ G + D FV
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DMY + KVFDE E+N+ + WN +I+ ++ G+ A+ LF M
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMGERNQ----VTWNSIISAEAQFGHFNDALVLFLRMQ 369
Query: 227 KK-------NVASWV--------------------------------SLIDGFMRKGDLK 247
+ N+ S + +L+D + + G ++
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSAC 306
+A ++F + E+ VS+ A++ G+ Q G+AE+AL ++ M + G++ + FT + L+ C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A G ++H ++ + + T LV MY++CG + A +F E++ +W
Sbjct: 490 ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWN 549
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+MI G +G ++A++ FK+M +G +PD ++L++C
Sbjct: 550 SMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590
>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
Length = 1305
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 252/475 (53%), Gaps = 21/475 (4%)
Query: 26 SNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
+N++ + + +++S N + R++ ++ NL + + I +SS + +D A+
Sbjct: 658 ESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSI----VSSYTRLGYVDDAMG 713
Query: 85 IFDHFTPKNLH----IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+ D L +N L+ G A + + I+ + ++PN + + ++V
Sbjct: 714 LLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVY 773
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L+ LG+ +H ++++ + YD +V L DMY++ G A VFD EKN ++
Sbjct: 774 EPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKN----IV 829
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKA----GEL 252
WN LI+G S G L++A L M K+ N +W SL+ G+ G +KA G++
Sbjct: 830 AWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKM 889
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
+ E VVSWTA+++G S+NG L +F +M + GV N T+ S L + L
Sbjct: 890 KKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLL 949
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+G VH++ N+ + TALVDMYAK G++++A+ +F K K L +W MI G
Sbjct: 950 YSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGY 1009
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A+ R E+ I F M+ +G EPD F ++L+ C SG V+ +FD MR Y + P+
Sbjct: 1010 AMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPT 1069
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
++H + +V LL R G +D+A +FI MP PD IWGA +C+ H+D ++A+IA
Sbjct: 1070 IEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIA 1124
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 183/417 (43%), Gaps = 41/417 (9%)
Query: 50 IHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH +I L S +R+ + L+ S+D A IFD ++ +N ++ ++
Sbjct: 546 IHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSG 605
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+++ + F M + T + + ++ + GR +H +++ G E + +
Sbjct: 606 NWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCN 665
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
L MY + GK + KVF+ ++N S WN +++ +++GY+ A+ L M
Sbjct: 666 SLIVMYSRNGKLESSRKVFNSMVDRNLSS----WNSIVSSYTRLGYVDDAMGLLDEMETC 721
Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
K ++ +W SL+ G+ K + A+A+
Sbjct: 722 GLKPDIVTWNSLLSGYASK-------------------------------ALSRDAIAVL 750
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
++ AG++ N ++ S L A + G ++ G +H Y+ N + T L+DMY K
Sbjct: 751 KRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKT 810
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G + A +VF EK+++ W ++I GL+ G ++A +M G + + + +++
Sbjct: 811 GYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLV 870
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+ G+ + AL M+ + +EP+V T +++ S+ G L KM E
Sbjct: 871 SGYATWGKTEKALAVVGKMKKN-GVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQE 926
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 164/384 (42%), Gaps = 8/384 (2%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AIA I+ + N + + ++ ++ K + IH +I + L+ + T LI
Sbjct: 746 AIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLID 805
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ YA +FD KN+ +N LI GL+ + + M + ++ N +T
Sbjct: 806 MYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVT 865
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + A+ + + K+GVE + + + G K+F +
Sbjct: 866 WNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQ 925
Query: 192 EKNKSESVLLWNVLIN--GCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLK 247
E+ S + + L+ GC + Y K V F + ++ +L+D + + GDL+
Sbjct: 926 EEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQ 985
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A E+F + K + SW MI G++ E+ +A+F ML+AG+ + T S LS C
Sbjct: 986 SAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCK 1045
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
G + G + + + + +G+ I + +V++ + G + EA + + D
Sbjct: 1046 NSGLVREGWKYFDLMRSH-YGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATI 1104
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
W A + IH E A +K++
Sbjct: 1105 WGAFLSSCKIHRDLELAEIAWKRL 1128
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 115/279 (41%), Gaps = 49/279 (17%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVRA 294
LI ++ G+ A +F + VSW + G E K L F ++ + GV
Sbjct: 463 LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFGVEKYKVLEEFVRLQNKGVNF 522
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAAS 351
++ + CA + G +H + GL + + +AL+ Y +C +++ A+
Sbjct: 523 DEVVLAMVFRICAVLMYRFLGFTIHGGLIKR--GLDNSDTRVVSALMGFYGRCVSLDLAN 580
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC---- 407
+F E ++D L W ++ G +E+A++ F+ M +SG + + + +L C
Sbjct: 581 KIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKE 640
Query: 408 -----------------------------WYS--GQVKLALNFFDSMRFDYFIEPSVKHH 436
YS G+++ + F+SM ++ ++
Sbjct: 641 GFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSM-----VDRNLSSW 695
Query: 437 TVVVNLLSRVGQVDKALNFINKMPE---TPDFVIWGALF 472
+V+ +R+G VD A+ +++M PD V W +L
Sbjct: 696 NSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLL 734
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 160/527 (30%), Positives = 261/527 (49%), Gaps = 47/527 (8%)
Query: 1 MKGHVFNRLTTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+KG F+ ++I+ T++ K++ +N T IS N L HA ++
Sbjct: 78 IKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCL---HAHAVVDGF 134
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
++ + + L+ + YA +FD ++ ++N +I GL N + + F
Sbjct: 135 DSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKD 194
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+ VR + T V +VA + + +G G+ CL +K G +D +V L ++ +
Sbjct: 195 MVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED 254
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----------------G 223
A +F + ++ +N LI+G S G AV+ F G
Sbjct: 255 VDTARLLFGMI----RKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVG 310
Query: 224 MMPKKNVASWVSL---IDGFM--------------------RKGDLKKAGELFEQMPEKG 260
++P + + L I GF R ++ A +LF++ EK
Sbjct: 311 LIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKT 370
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
V +W AMI+G++Q+G E A+++F +M+ N T+ S LSACA++GAL G VH
Sbjct: 371 VAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQ 430
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I + + TAL+DMYAKCGNI AS +F T EK+ +TW MI+G +HG ++
Sbjct: 431 LIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDE 490
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F +M++ G +P FL++L AC ++G V+ F +M Y IEP +H+ +V
Sbjct: 491 ALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMV 550
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
++L R GQ++KAL FI KMP P +WG L AC HKDT +A++A
Sbjct: 551 DILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVA 597
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 222/488 (45%), Gaps = 58/488 (11%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYAL 83
+I+ +++LI + + L + HAQ+I H+L +++T +L + +A
Sbjct: 5 DISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATR----HAR 60
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASL 142
++F ++ +FNVLI+G + + S IS + +L+ ++ P+ TY F ++++
Sbjct: 61 ALFFSVPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAF---AISAS 116
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+LG LH V G + + FV L D+Y + + A KVFD+ P+++ +LW
Sbjct: 117 PDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRD----TVLW 172
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------------- 231
N +I G + +V++F M + V
Sbjct: 173 NTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALK 232
Query: 232 --------SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
LI F + D+ A LF + + +VS+ A+I+GFS NGE E A+
Sbjct: 233 LGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKY 292
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F ++L +G R + T+V + + G L + + + L+ ++ TAL +Y++
Sbjct: 293 FRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSR 352
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
I+ A +F E+ EK + W AMI G A G E AI F++MM + P+ +I
Sbjct: 353 LNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSI 412
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC G + + ++ +E ++ T ++++ ++ G + +A + E
Sbjct: 413 LSACAQLGALSFGKSVHQLIK-SKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK- 470
Query: 464 DFVIWGAL 471
+ V W +
Sbjct: 471 NTVTWNTM 478
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 9/260 (3%)
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+ ++A+ L G + A LF +P+ + + +I GFS + +A +++ +
Sbjct: 37 QHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA-SSISFYTH 95
Query: 287 ML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+L + + ++FT A+SA G+ +H + + F + +ALVD+Y K
Sbjct: 96 LLKNTTLSPDNFTYAFAISASPDDNL---GMCLHAHAVVDGFDSNLFVASALVDLYCKFS 152
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ A VF + ++D + W MI GL + Y+ ++Q FK M+ G D T +L
Sbjct: 153 RVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLP 212
Query: 406 ACWYSGQVKLALNF-FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
A +VK+ + +++ + + V T ++++ S+ VD A + M PD
Sbjct: 213 AVAEMQEVKVGMGIQCLALKLGFHFDDYVL--TGLISVFSKCEDVDTA-RLLFGMIRKPD 269
Query: 465 FVIWGALFCACRTHKDTKIA 484
V + AL + +T+ A
Sbjct: 270 LVSYNALISGFSCNGETECA 289
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 99/239 (41%), Gaps = 7/239 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T I+S + + +H I NL + ++T LI + +I A +F
Sbjct: 405 NPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF 464
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D + KN +N +I G + + + F ML L +P+ +T+ V + + L+
Sbjct: 465 DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVR 524
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G + H ++ K +E A + D+ + G+ A + + P + +W L
Sbjct: 525 EGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPA---VWGTL 581
Query: 206 INGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ C R A E + NV +V L + + + + KA + E + ++ +
Sbjct: 582 LGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNL 640
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 163/546 (29%), Positives = 261/546 (47%), Gaps = 70/546 (12%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRI-TTQLISSASLHKSI--DYALSIFDHFTPKNLHIF 97
S S KQ +Q+HA I++H L I Q++ SAS + + Y S+ H + +
Sbjct: 14 SLSVKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSVLHHSKSPDSFSW 73
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
IR ++ F+ + +V M R + P K+ A ++ G +H + K
Sbjct: 74 ACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQK 133
Query: 158 ---SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------------- 194
SG +V L D Y +LG A K+FDE E+N
Sbjct: 134 FGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 193
Query: 195 -------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ V+ WN +I+G ++ G + KA+ LF MP++N ASW ++I G++ GD+
Sbjct: 194 QRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDID 253
Query: 248 KAGELFEQMPEKGVVSWTAMINGFS-------------------------------QNGE 276
A F+ MP++ VSW MI+G+S QN
Sbjct: 254 SARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313
Query: 277 AEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
++AL +F ML D V+ ++ T+ S +SAC+++G L G + +Y+ + G +
Sbjct: 314 PKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TAL+D+YAKCG+I+ A +F ++KDL+ +TAMI G I+G+ AI+ F +M+ +
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ F+ +LTA ++G V+ + F SM+ Y + PSV H+ ++V+L R G++ +AL
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYHCFTSMK-KYNLVPSVDHYGIMVDLFGRAGRLQEALE 492
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
I MP P +WGAL ACR H + + +IA Q L P YC
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE---PDTTGYCSLLSNIYAS 549
Query: 515 GRTWRE 520
G W +
Sbjct: 550 GERWDD 555
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 235/466 (50%), Gaps = 41/466 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
T + S+ + + + L+ IHA NL + + ++ ++ S + + YA +F
Sbjct: 181 TSQSLASMAEACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFS 240
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLS 143
N +N LIRG +++S + F M R V P+ T+ F+ S+ L
Sbjct: 241 QIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLP 300
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L+ +H ++K G + FV L +Y G A +VF+E
Sbjct: 301 LIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNE-------------- 346
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
M +V SW L+ +R G+L+ A ++F +MPE+ VVS
Sbjct: 347 ---------------------MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVS 385
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT M++G++Q + +AL +F +M D GVR ++ +VS +SAC +G LE G VH YI
Sbjct: 386 WTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYID 445
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N FG ++ AL+DMYAKCG ++ A VF + K L+TW +MI A HG E A +
Sbjct: 446 ENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFR 505
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M+YSG PDG FLA+LTA + G V F+SM+ DY +E V+H+ +V++L
Sbjct: 506 VFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDML 565
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G++++A I M + V+WGAL ACR + D ++ + L+
Sbjct: 566 GRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLK 611
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 259/476 (54%), Gaps = 31/476 (6%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTP 91
I+SL+ + +L+++H +I ++ ++L+ + S ++YA S+F+
Sbjct: 8 ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+L+I+N +I+G + + ++ + M + P+ T+PFV K+ + ++ +LG+ +
Sbjct: 68 PSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCV 127
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-- 209
H IVK+G E D + L MY G A KVFD+ P+ N V+ W LI GC
Sbjct: 128 HNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWN----VVAWTSLIAGCIS 183
Query: 210 ----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK-------KAGEL----FE 254
S+ + K +EL+ + P N + V+++ R DL + G++ F+
Sbjct: 184 NDCPSEAVRVYKDMELWSVAP--NEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQ 241
Query: 255 QMPEKGVVSWTAMIN-----GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
V+ TA+++ ++Q G+A +AL +F M AG + T + + ACA +
Sbjct: 242 SNSNFNVILATAIVDMYAKCAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHL 301
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GAL +G +H Y+S + AIGTALVDMYAK G+ E A VF E ++KD+ WT++I
Sbjct: 302 GALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLI 361
Query: 370 WGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
GLA+HG E+A+ +FKKM + PD ++ +L+AC + G+V+ N F SM+ +
Sbjct: 362 IGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHG 421
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
IEP+ +H+ +V+LLSR G++ +A + KMP P+ IW AL C+ +++ +A
Sbjct: 422 IEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVA 477
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 234/468 (50%), Gaps = 23/468 (4%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P + + L+ S Q+HA +I H L L+S L S L+
Sbjct: 9 PGRSNSPAAASRLLPRRGSAAAGHQLHAVLIKHGLLHHPASLRALLSR--LPPSSASTLA 66
Query: 85 IFDHFTPKNLH--IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+ P +L +++ I LA + + + ++ F + RLS+ +P + KS A
Sbjct: 67 LLLSAAPCSLSPPLYSPAIAALASSPYPAASLAVFNRVSRLSLPIPLPAFPALLKSCARA 126
Query: 143 ------------SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+S G LH ++K G D +V+ L MY +LG+ A KVFD
Sbjct: 127 FNLCAAADGGGEGFVSKGMELHGCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGM 186
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
P +N + WN L+ +G R A + MP+++V+ W + I R GD++ A
Sbjct: 187 PARN----AVSWNALVAAHGDVGDSRGAERVSQEMPERSVSWWNAEITRHARVGDMEAAA 242
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+F +MP + VSW ++I +++ G+ +AL +F +M D+GV + T+VS L AC ++G
Sbjct: 243 RVFREMPGRDAVSWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVLGACTEIG 302
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G VH Y+S G +G ALVDMYAKCG++E A VF +D+ W AMI
Sbjct: 303 ELELGKGVHGYLSSKGVLADGYVGNALVDMYAKCGSLELARQVFESMSTRDITCWNAMIV 362
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GL++HG +A++ F M EPD FL +L C +SG V F SM DY I
Sbjct: 363 GLSVHGYSREALELFNVMR---VEPDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIV 419
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
P VKH+ +V++L R G+V +A +N MP + V+W + ACR H
Sbjct: 420 PGVKHYGCMVDMLCRCGKVAEAYQMLNYMPLKANSVLWKMVLAACRLH 467
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 215/400 (53%), Gaps = 35/400 (8%)
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
++N LI G + F+ FV M+R S +TY V + L LG +H +
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
++SGV D V L DMY + G A+ +F+
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEG-------------------------- 221
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
M +++ASW S+I G +R G + +A +LF+ MPE+ ++WTAMI+G+ Q G
Sbjct: 222 ---------MQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVG 272
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
AL F M VRA++FT+VS ++ACA++GALE G Y+ + +G
Sbjct: 273 RFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGN 332
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
AL+DMY+KCG+IE A VF + +D TWTA+I GLA++GR E+AI F +M+ + P
Sbjct: 333 ALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTP 392
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
D F+ +LTAC ++G V FF SM Y I P+V H+ ++++L R G++ +AL+
Sbjct: 393 DEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDT 452
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
I+KMP P+ IWG L +CR + +++I ++A + L+
Sbjct: 453 IDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELD 492
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 41/246 (16%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
V W A+I+G +++G E + F M+ A A T VS LSAC K L G++VH
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASL----------------------------- 352
+ + + ALVDMYA+CG+++AA +
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 353 --VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F E+D + WTAMI G GR+ A++ F+ M D ++++TAC
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQVDKALNFINKMPETPDFV 466
G AL + R Y +K V +++ S+ G +++AL+ M F
Sbjct: 307 G----ALETGEWARI-YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFT 361
Query: 467 IWGALF 472
W A+
Sbjct: 362 -WTAII 366
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 16/258 (6%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +IS +D A +FDH ++ + +I G + F+ + F +M VR
Sbjct: 231 TSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVR 290
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ T V + A L L G + + G++ D FV L DMY + G A V
Sbjct: 291 ADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDV 350
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMR 242
F + ++K W +I G + G +A+++F M + + ++V ++
Sbjct: 351 FKDMHNRDK----FTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTH 406
Query: 243 KGDLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + K E F M E VV + +I+ + G+ ++AL +M ++ N
Sbjct: 407 AGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKM---PMKPNST 463
Query: 298 TVVSALSACAKVGALEAG 315
+ L++C G E G
Sbjct: 464 IWGTLLASCRVYGNSEIG 481
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 248/510 (48%), Gaps = 40/510 (7%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSN-STKQLRQIHAQIILHNLFASSRITTQ 68
T+ P + SS S I ++L+H+ S LRQ+HA ++ L ++
Sbjct: 12 TSTTGPPHLLPSSASISAFIASDPALTLLHTRCVSMAHLRQLHAALVKSGLAKDPIAASR 71
Query: 69 LIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
++ A + + YA + H N ++N +IR L++ + + ++ FV ML P
Sbjct: 72 AVAFCAGPGRDVLYAERLVRHHPRPNSFMWNTVIRALSDGARPDAAVALFVDMLSSPTPP 131
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+R ++P + + A L G LH + +K G+ DA+VR MY G+
Sbjct: 132 DRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAGDAYVRNATIAMYASCGRA------- 184
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE A+ LFG P+ +V + S+I R G +
Sbjct: 185 DE----------------------------ALALFGQCPELDVVACNSVIVALARAGRVD 216
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +F+ MPE+ V +W+AM++ +++ +ALA+F M G+ N +VS L CA
Sbjct: 217 EARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCA 276
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---T 364
+GAL G VH YI + + + TALVDMY KCG+++ A VF + + L +
Sbjct: 277 SLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSS 336
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +M+ GLA+HG++ +A+ F ++ G PD F+A+LTA +SG A F SM
Sbjct: 337 WNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMS 396
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ +EP ++H+ +V+ L+R G++ +A + I MP PD IWGAL CR H D ++
Sbjct: 397 SEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMPMAPDAAIWGALLSGCRLHGDAELG 456
Query: 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
A + + + A + + + GD
Sbjct: 457 ARAAREAVRCDPRDSGAYVLAASVLARGGD 486
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 44/447 (9%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+ A +FD ++ ++N +I G + NS+F+ I FV ML + + + T V +V
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A L LG G+ CL K G+ D +V L +Y + GK+ +FD+ + + +
Sbjct: 225 AELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD----L 280
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM-------------- 241
+ +N +I+G + AV LF + + N ++ V LI ++
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340
Query: 242 ---------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
R +++ A +LF++ PEK + SW AMI+G++QNG ++A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+++F +M+ + N TV S LSACA++GAL G VH I + TALVDM
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG+I A +F +K+++TW AMI G +HG ++A++ F +M+ SG P G F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
L+IL AC +SG V F SM +Y +P +H+ +V++L R GQ+ AL FI +MP
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIA 487
P +WGAL AC HK+T++A +A
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVA 606
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/490 (25%), Positives = 228/490 (46%), Gaps = 47/490 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
++L++++ + QL QI AQ+ILH + T+L ++ + +F+ + +L
Sbjct: 18 LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+FNVLIRG ++N +S I + + + + +RP+ TY F + + L +G LH
Sbjct: 78 FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ GV + FV + D+Y + + A KVFD PE++ +LWN +I+G S+
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD----TVLWNTMISGFSRNS 193
Query: 214 YLRKAVELF------------------------------GM-----MPKKNVASWVSLID 238
Y ++ +F GM KK + S V ++
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253
Query: 239 GFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + + G K LF+Q+ + ++S+ AMI+G++ N E E A+ +F ++L +G R
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N T+V + L+ + N L+ ++ TAL +Y + ++ A +F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
E+ EK L +W AMI G +G ++AI F++MM P+ +IL+AC G +
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALS 432
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ + + +E +V T +V++ ++ G + +A + M + + V W A+
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD-KNVVTWNAMITG 490
Query: 475 CRTHKDTKIA 484
H K A
Sbjct: 491 YGLHGHGKEA 500
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 165/366 (45%), Gaps = 50/366 (13%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD +L +N +I G N +S ++ F +L R N T + +
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L L R + L +K G+ V L +Y +L + + A ++FDE+PEK S+ WN
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK----SLASWNA 386
Query: 205 LINGCSKIGYLRKAVELFG-MMPKKN--------------------VASWV--------- 234
+I+G ++ G +A+ LF MMP+ + + WV
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL 446
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D + + G + +A +LF+ M +K VV+W AMI G+ +G ++AL +F++
Sbjct: 447 ESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYE 506
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKC 344
ML +G+ T +S L AC+ G + G + + ++ N++G + +VD+ +
Sbjct: 507 MLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA-NNYGFQPMSEHYACMVDILGRA 565
Query: 345 GNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
G + A L F E E W A++ IH E A K++ +P+ +
Sbjct: 566 GQLTNA-LEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQ--LDPENVGYYV 622
Query: 403 ILTACW 408
+L+ +
Sbjct: 623 LLSNIY 628
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 15/234 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T I+S + + +H I L ++ ++T L+ + SI A +F
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D KN+ +N +I G + H + + F ML+ + P +T+ + + + L+S
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G + H + G + + + D+ + G+ A + + P + +W L
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPA---VWGAL 590
Query: 206 INGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGEL 252
+ C + K E+ + K+ NV +V L + + + KA +
Sbjct: 591 LGAC----MIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASV 640
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/458 (31%), Positives = 245/458 (53%), Gaps = 42/458 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSID---YALSIFD 87
++L+ S +S L+ IH ++ + ++F +SR+ + ++ +K + YA IF
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
NL +FN+LIR + + + ML+ + P+ +T+PF+ K+ + + + +
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G H IV+ G + D +V L MY G A ++F + ++ V+ W ++
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRD----VVSWTSMVA 191
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G K G + A E+F MP +N+ +W +I+G+ + +KA +LFE M +GVV
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV----- 246
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
AN+ +VS +S+CA +GALE G R + Y+ +
Sbjct: 247 --------------------------ANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ +GTALVDM+ +CG+IE A VF E D L+W+++I GLA+HG +A+ YF +
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G P F A+L+AC + G V+ L +++M+ D+ IEP ++H+ +V++L R G
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++ +A NFI KM P+ I GAL AC+ +K+T++A+
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAE 438
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 44/447 (9%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+ A +FD ++ ++N +I G + NS+F+ I FV ML + + + T V +V
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A L LG G+ CL K G+ D +V L +Y + GK+ +FD+ + + +
Sbjct: 225 AELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD----L 280
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM-------------- 241
+ +N +I+G + AV LF + + N ++ V LI ++
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340
Query: 242 ---------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
R +++ A +LF++ PEK + SW AMI+G++QNG ++A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+++F +M+ + N TV S LSACA++GAL G VH I + TALVDM
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG+I A +F +K+++TW AMI G +HG ++A++ F +M+ SG P G F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
L+IL AC +SG V F SM +Y +P +H+ +V++L R GQ+ AL FI +MP
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIA 487
P +WGAL AC HK+T++A +A
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVA 606
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/490 (25%), Positives = 228/490 (46%), Gaps = 47/490 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
++L++++ + QL QI AQ+ILH + T+L ++ + +F+ + +L
Sbjct: 18 LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+FNVLIRG ++N +S I + + + ++RP+ TY F + + L +G LH
Sbjct: 78 FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ GV + FV + D+Y + + A KVFD PE++ +LWN +I+G S+
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD----TVLWNTMISGFSRNS 193
Query: 214 YLRKAVELF------------------------------GM-----MPKKNVASWVSLID 238
Y ++ +F GM KK + S V ++
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253
Query: 239 GFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + + G K LF+Q+ + ++S+ AMI+G++ N E E A+ +F ++L +G R
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N T+V + L+ + N L+ ++ TAL +Y + ++ A +F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
E+ EK L +W AMI G +G ++AI F++MM P+ +IL+AC G +
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALS 432
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ + + +E +V T +V++ ++ G + +A + M + + V W A+
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD-KNVVTWNAMITG 490
Query: 475 CRTHKDTKIA 484
H K A
Sbjct: 491 YGLHGHGKEA 500
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 165/366 (45%), Gaps = 50/366 (13%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD +L +N +I G N +S ++ F +L R N T + +
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L L R + L +K G+ V L +Y +L + + A ++FDE+PEK S+ WN
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK----SLASWNA 386
Query: 205 LINGCSKIGYLRKAVELFG-MMPKKN--------------------VASWV--------- 234
+I+G ++ G +A+ LF MMP+ + + WV
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL 446
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D + + G + +A +LF+ M +K VV+W AMI G+ +G ++AL +F++
Sbjct: 447 ESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYE 506
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKC 344
ML +G+ T +S L AC+ G + G + + ++ N++G + +VD+ +
Sbjct: 507 MLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA-NNYGFQPMSEHYACMVDILGRA 565
Query: 345 GNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
G + A L F E E W A++ IH E A K++ +P+ +
Sbjct: 566 GQLTNA-LEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQ--LDPENVGYYV 622
Query: 403 ILTACW 408
+L+ +
Sbjct: 623 LLSNIY 628
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 246/474 (51%), Gaps = 40/474 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHK 77
I S + I E+ ++S++H Q++Q+HA I L + +L+ + + L
Sbjct: 27 IPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDV 86
Query: 78 SID-YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+D Y +F N ++ LIRG A F + + M R + P T+ +
Sbjct: 87 PMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALL 146
Query: 137 KSVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ ++ ++LGR +H I+ G D +V L DMYV+ G +VFDE
Sbjct: 147 KACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDE------ 200
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
M ++V SW SLI + + G+++ A ELF+
Sbjct: 201 -----------------------------MLDRDVISWTSLIVAYAKVGNMEAASELFDG 231
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+P K +V+WTAM+ G++QN +AL +F +M AGV+ ++ T+V +SACA++GA +
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291
Query: 316 VRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
V + + FG +G+AL+DMYAKCG++E A VF +E+++ ++++MI G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG A++ F +M+ + +P+ F+ +LTAC ++G V+ F M + + PS
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
H+ +V+LL R G++++ALN + MP P +WGAL ACR H + +A+IA
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIA 465
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/512 (30%), Positives = 247/512 (48%), Gaps = 47/512 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H I+ + + L++ + +D A +FD T +++ +N +I G N
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ +S FV ML + + T V A L+SLGR +HC VK+ +
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCN 335
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
L DMY + G A VF E + SV+ + +I G ++ G +AV+LF
Sbjct: 336 TLLDMYSKCGDLDSAKVVFREMSGR----SVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 223 GMMPK--------------------KNVASWV-------------SLIDGFMRKGDLKKA 249
G+ P K V W+ +L+D + + G +++A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF-FQMLDAGVRANDFTVVSALSACAK 308
+F +M K ++SW +I G+S+N A +AL++F +++ ++ TV L ACA
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+ A + G +H YI N + + +LVDMYAKCG + A L+F + KDL++WT M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G +HG ++AI F +M +G EPD F+++L AC +SG V FF+ MR +
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
IEP+V+H+ +V++L+R G + KA FI MP PD IWGAL C CR H D K+A+
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ L P+ Y + W E
Sbjct: 692 EKVFELE---PENTGYYVLMANIYAEAEKWEE 720
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 225/497 (45%), Gaps = 62/497 (12%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++ L S S K +++ I + S + ++L + + A +FD
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N+L+ LA++ F I F M+ V + T+ VSKS +SL ++ G
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
LH I+KSG V L Y++ + A KVFDE E++ V+ WN +ING
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERD----VISWNSIINGY 271
Query: 210 SKIGYLRKAVELFGMM----PKKNVASWVS------------------------------ 235
G K + +F M + ++A+ VS
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331
Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
L+D + + GDL A +F +M + VVS+T+MI G+++ G A +A+ +F +M +
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+ + +TV + L+ CA+ L+ G RVH +I ND G + AL+DMYAKCG++ A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
LVF E + KD+++W +I G + + +A+ F ++ PD +L AC
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC-- 509
Query: 410 SGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+ FD MR YF + V + +V++ ++ G + A + +
Sbjct: 510 -----ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCGALLLARLLFDDIT- 561
Query: 462 TPDFVIWGALFCACRTH 478
+ D V W + H
Sbjct: 562 SKDLVSWTVMIAGYGMH 578
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 178/391 (45%), Gaps = 52/391 (13%)
Query: 59 LFASSRITTQLI-SSASLHKSIDYALSI--FDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
L + R+ +I + ASL D A SI FD +++ N +R E+ + ++ +
Sbjct: 27 LRSDVRVRKDVIFNRASLRTVSDRADSITTFD----RSVTDANTQLRRFCESGNLKNAVK 82
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
+ + P L V + A L G+ + I +G D+ + LA MY
Sbjct: 83 LLHVSGKWDIDPRTLCS--VLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYT 140
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--SW 233
G + A +VFD+ K E L WN+L+N +K G ++ LF M V S+
Sbjct: 141 NCGDLKEASRVFDQV----KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196
Query: 234 V-------------------------------------SLIDGFMRKGDLKKAGELFEQM 256
SL+ +++ + A ++F++M
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
E+ V+SW ++ING+ NG AEK L++F QML +G+ + T+VS + CA + G
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR 316
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
VH + F + L+DMY+KCG++++A +VF E + ++++T+MI G A G
Sbjct: 317 AVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREG 376
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+A++ F++M G PD A+L C
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 31/305 (10%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T T +++ + + +++H I +++ ++ L+ + S+ A +F
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM 458
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFML---RLSVRPNRLTYPFVSKSVASLSLLS 146
K++ +N +I G ++N + +S F +L R S P+ T V + ASLS
Sbjct: 459 RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFS--PDERTVACVLPACASLSAFD 516
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H I+++G D V L DMY + G A +FD+ K+ ++ W V+I
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD----LVSWTVMI 572
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP----- 257
G G+ ++A+ LF M + + S+VSL+ G + + F M
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
E V + +++ ++ G KA ++ ++ D T+ GAL G R
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKA----YRFIENMPIPPDATI---------WGALLCGCR 679
Query: 318 VHNYI 322
+H+ +
Sbjct: 680 IHHDV 684
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/521 (28%), Positives = 257/521 (49%), Gaps = 43/521 (8%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R + AI + ++ N + ++ L+ S+ K +HA + + + + T
Sbjct: 125 RFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGT 184
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI S+ + A +FD K++ + ++ EN F+ + F M + +P
Sbjct: 185 ALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKP 244
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N T+ V K+ L + ++G+ +H K+ + FV V L D+Y++ G A +VF
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASW 233
+E P+ + V+ W+ +I ++ +A+E+F M + + AS
Sbjct: 305 EEMPK----DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL 360
Query: 234 V-------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
V +L+D + + G ++ + +LF + P VSW +I
Sbjct: 361 VDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVI 420
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
G+ Q G EKAL +F ML+ V+ + T S L ACA + ALE G ++H+ +
Sbjct: 421 VGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD 480
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+G AL+DMYAKCGNI+ A LVF +E D ++W AMI G ++HG Y +A++ F+ M
Sbjct: 481 KNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESM 540
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ + +PD F+ IL+AC +G + +F SM +Y IEP +H+T +V LL R G
Sbjct: 541 LETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGH 600
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+DKA ++++P P ++W AL AC H D ++ +I+ Q
Sbjct: 601 LDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQ 641
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 164/371 (44%), Gaps = 43/371 (11%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ S+ A +FD +N F LI+G ++ F I F + N + V
Sbjct: 92 YDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTV 151
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K + S LG +H + K G + DAFV L D Y G A +VFD K+
Sbjct: 152 LKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKD- 210
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------NVAS- 232
++ W ++ + ++++LF G P NV
Sbjct: 211 ---MVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKA 267
Query: 233 ----------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
V LID +++ GD+ A ++FE+MP+ V+ W+ MI ++Q+ +
Sbjct: 268 VHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQ 327
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+E+A+ MF +M V N FT+ S L ACA + L+ G ++H ++ + + A
Sbjct: 328 SEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNA 387
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMYAKCG +E + +F E+ ++W +I G G E+A+ FK M+ +
Sbjct: 388 LMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGT 447
Query: 397 GTVFLAILTAC 407
+ ++L AC
Sbjct: 448 EVTYSSVLRAC 458
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L++ +++ L A +LF++MP++ VS+ +I G+SQ +A+ +F ++ G N
Sbjct: 85 LLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELN 144
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
F + L + G VH + F +GTAL+D Y+ CG E A VF
Sbjct: 145 PFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFD 204
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-----WYS 410
+ KD+++WT M+ + +E++++ F +M G +P+ F ++L AC +
Sbjct: 205 AIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNV 264
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
G+ F S + F+ +++L + G VD AL +MP+ D + W
Sbjct: 265 GKAVHGCAFKTSYLEELFV------GVELIDLYIKSGDVDDALQVFEEMPKD-DVIPW 315
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 239/461 (51%), Gaps = 40/461 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDHFTP 91
+IS + + Q++QIH ++ L S I T+LI + + L +D YA + +
Sbjct: 52 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N ++ +IRG A F I+ + M + + P T+ + K+ ++ L+LGR
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H + +V + DMYV+ A KVFDE
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDE---------------------- 209
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
MP+++V SW LI + R G+++ A ELFE +P K +V+WTAM+ GF
Sbjct: 210 -------------MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGF 256
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+QN + ++AL F +M +G+RA++ TV +SACA++GA + R + +
Sbjct: 257 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 316
Query: 332 --AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
IG+AL+DMY+KCGN+E A VF K++ T+++MI GLA HGR ++A+ F M+
Sbjct: 317 HVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMV 376
Query: 390 -YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+ F+ L AC +SG V FDSM + ++P+ H+T +V+LL R G+
Sbjct: 377 TQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGR 436
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +AL I M P +WGAL ACR H + +IA+IA +
Sbjct: 437 LQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAE 477
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RL 123
I + LI S +++ A+++F KN+ ++ +I GLA + Q + F +M+ +
Sbjct: 320 IGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQT 379
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRG 182
++PN +T+ + + L+ GR + + ++ GV+ R H M LG+T
Sbjct: 380 EIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQP---TRDHYTCMVDLLGRT-- 434
Query: 183 AFKVFDETPEKNKSESVL----LWNVLINGC-----SKIGYLRKAVELFGMMPKKNVASW 233
E E K+ SV +W L+ C +I + A LF + P + ++
Sbjct: 435 --GRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEI-AAEHLFELEPDI-IGNY 490
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMING 270
+ L + + GD + + + EKG+ VSW NG
Sbjct: 491 ILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNG 532
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 244/465 (52%), Gaps = 35/465 (7%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P+ + SL+ + L QIH ++ L + +Q I + + YA S
Sbjct: 18 PAIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFS 77
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
IF + T +L ++N I+ L++ S + I + + +RP+ + P V K+V LS
Sbjct: 78 IFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSA 137
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ +GR +H V S ++ D V L MY
Sbjct: 138 VEVGRQIHTQTVSSALDMDVNVATSLIQMY------------------------------ 167
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
S G++ A +LF + K+VA W +++ G+++ G+LK A ++F +MP++ V+SW
Sbjct: 168 -----SSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISW 222
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T +I G++Q +A+ +F +M V ++ +++ LSACA +GALE G +HNYI
Sbjct: 223 TTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEK 282
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ ++ AL+DMYAK GNI A VF K+K ++TW+ +I LA+HG +AI
Sbjct: 283 HGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDM 342
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F +M + P+ F+AIL+AC + G V + +FD M+ Y IEP ++H+ +++LL+
Sbjct: 343 FLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLA 402
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G + +A ++ MP + +IWG+L A TH+D ++A++AL+
Sbjct: 403 RAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALK 447
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/490 (30%), Positives = 244/490 (49%), Gaps = 35/490 (7%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF----ASSRITTQLISSASLH 76
SS+ P+ ++ + L S + KQ QIH Q+ + LF A+SR +L + +
Sbjct: 48 SSNAPTLDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCACLN-- 105
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
S+ + +S+++H + + N ++R N F + ++ M+ V PN T+P V
Sbjct: 106 -SVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLV 164
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD------- 188
+K A + L G+ +H L+VK G E D FVR Y G+T A VFD
Sbjct: 165 AKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDL 224
Query: 189 --------------------ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
E ++ + WN +I+G +G + A LF MP +
Sbjct: 225 VSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSR 284
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
+V SW +IDGF R D+ A + F++MP + VVSW M+ + + + L F M+
Sbjct: 285 DVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMV 344
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
++ ++VS L+ACA++ L+ G VH+Y+ N + TAL+ MYAKCG ++
Sbjct: 345 GGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMD 404
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
A VF + EK +++W +MI G IHG ++A++ F++M G P+ F+++L+AC
Sbjct: 405 LAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACS 464
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+SG V +FD M Y I+P +H+ +V+LL + G + + + K + +W
Sbjct: 465 HSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLW 524
Query: 469 GALFCACRTH 478
G L ACR H
Sbjct: 525 GDLLSACRAH 534
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/422 (33%), Positives = 227/422 (53%), Gaps = 51/422 (12%)
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
YA +FD N+ ++N + RG A++ ++ F VA
Sbjct: 3 YARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEM----------------FERNVVA 46
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
S++ + Y+ A ++FD PE++ V+
Sbjct: 47 WTSMI--------------------------NGYILSADLVSARRLFDLAPERD----VV 76
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
LWN++++G + G + +A +LF MP ++V W +++ G+ G+++ LFE+MPE+
Sbjct: 77 LWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 136
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+ SW A+I G++ NG + L F +ML ++ V ND T+V+ LSACA++GAL+ G VH
Sbjct: 137 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 196
Query: 320 NYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
Y + GLKG +G AL+DMYAKCG IE A VF KDL++W +I GLA+H R
Sbjct: 197 VYAESS--GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSR 254
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
A+ F +M +G +PDG F+ IL AC + G V+ +F SM DY I P ++H+
Sbjct: 255 GADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 314
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+V++L+R G++++A+ F+ KMP D VIW L ACR +K+ ++A++ALQ L
Sbjct: 315 CMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 374
Query: 498 IP 499
P
Sbjct: 375 NP 376
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 165/401 (41%), Gaps = 60/401 (14%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P NI + S+ ++ R+I ++ N+ A + + I SA L A
Sbjct: 12 PDPNIALWN--SMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADLVS----ARR 65
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR--LTYPFVSKSVASL 142
+FD +++ ++N+++ G E F M PNR + + V K A+
Sbjct: 66 LFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEM------PNRDVMFWNTVLKGYATN 119
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG---KTRGAFKVFDETPEKNKSESV 199
+ GL + E + F L Y G + G+FK + +++
Sbjct: 120 GNVEALEGLF----EEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDAT 175
Query: 200 LLWNVLINGCSKIGYLR--KAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
L+ +++ C+++G L K V ++ K NV +L+D + + G ++ A +F
Sbjct: 176 LV--TVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 233
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M K ++SW +I G + + AL +FFQM +AG + + T + L AC +G +E G
Sbjct: 234 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 293
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
A ++ D Y IE + M+ LA
Sbjct: 294 F---------------AYFQSMADDYLIMPQIE---------------HYGCMVDMLARA 323
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
GR EQA+ + +KM E DG ++ +L AC V+LA
Sbjct: 324 GRLEQAMAFVRKM---PVEADGVIWAGLLGACRIYKNVELA 361
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 250/510 (49%), Gaps = 49/510 (9%)
Query: 23 HKPSNNITET----HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK- 77
H PS+++ E I ++I S L+Q+ + +I+ L S + +L+ +L
Sbjct: 12 HAPSSHMAEQLLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLC 71
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENS--HFQSCISHFVFMLRLSV-RPNRLTYPF 134
++ YA IFD F+ N H++ ++ + + H S S F M+ SV RPN YP
Sbjct: 72 NLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPL 131
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V KS LS +H + KSG V+ L Y
Sbjct: 132 VLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYA------------------- 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
S + ++ A +LF M ++NV SW +++ G+ R GD+ A LFE
Sbjct: 173 ---------------SSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFE 217
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
MPE+ V SW A++ +QNG +A+++F +M+ + +R N+ TVV LSACA+ G L+
Sbjct: 218 DMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQ 277
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H + D + +LVD+Y KCGN+E AS VF +K L W +MI A
Sbjct: 278 LAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFA 337
Query: 374 IHGRYEQAIQYFKKMM---YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+HGR E+AI F++MM + +PD F+ +L AC + G V +FD M + IE
Sbjct: 338 LHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIE 397
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +++LL R G+ D+AL ++ M D IWG+L AC+ H +A++A+++
Sbjct: 398 PRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKN 457
Query: 491 SCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+LN P Y G+ W E
Sbjct: 458 LVALN---PNNGGYVAMMANLYGEMGNWEE 484
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSV 125
T ++S + I A+++F+ +++ +N ++ +N F +S F M+ S+
Sbjct: 197 TAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSI 256
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN +T V + A L L +G+H + + D FV L D+Y + G A
Sbjct: 257 RPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASS 316
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVSLID 238
VF +K S+ WN +IN + G +A+ +F M K N+ +++ L++
Sbjct: 317 VFKMASKK----SLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLN 372
Query: 239 GFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
G + K F+ M E + + +I+ + G ++AL + M ++
Sbjct: 373 ACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM---KMK 429
Query: 294 ANDFTVVSALSACAKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
A++ S L+AC G L+ A V V N ++ N G + ++Y + GN E A
Sbjct: 430 ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPN--NGGYVAMMANLYGEMGNWEEA 485
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/479 (32%), Positives = 232/479 (48%), Gaps = 23/479 (4%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P + + L+ S Q+HA + H L L+S L S L+
Sbjct: 9 PGRSNSPAAASRLLPRRGSAAAGHQLHAVLFKHGLLHHPAFLRALLSR--LPPSSASTLA 66
Query: 85 IFDHFTPKNLH--IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+ P L +++ I LA + + ++ F + RLS+ +P + KS A
Sbjct: 67 LLLSAAPSALSPPLYSPAISALASSPCPAASLAVFNRVSRLSLPTPLPAFPALLKSCARA 126
Query: 143 ------------SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+S G LH ++K G D +V+ L MY +LG+ A KVFD
Sbjct: 127 FGLCAAADGGGEGFVSKGMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGM 186
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
P +N + WN L+ G L L MP+++V+ W + I R GD++ A
Sbjct: 187 PARN----AVSWNALVAAHGATGDLHGVELLSREMPERSVSWWNAEITRHARVGDMEAAA 242
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+F +MP + VSW ++I G+++ G +AL +F +M D+GV + T+VS L ACA++G
Sbjct: 243 RVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIG 302
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G VH YI G +G ALVDMYAKCG++E A +F +D+ W AMI
Sbjct: 303 ELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGSLELARQLFESMSTRDITCWNAMIV 362
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G ++HG +A++ F M EPD FL +L AC + G V +F SM DY I
Sbjct: 363 GFSVHGYSRKALELFDAMR---VEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIV 419
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P VKH+ +V++L R G+V +A IN MP + V+W + ACR H +A A
Sbjct: 420 PGVKHYGCMVDMLCRCGKVAEAYQMINHMPVKANCVLWKMVLAACRVHGHIDLANKAFH 478
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 240/510 (47%), Gaps = 40/510 (7%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
H R T+IA + S S H L+ S L QIHAQII+ F
Sbjct: 25 HQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 83
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
T LI+ SL D A S+FD + ++N +IR + + + +
Sbjct: 84 HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMY------ 137
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+C++ K G+E D F+ L DMY ++G + A
Sbjct: 138 ----------------------------YCMVEKGGLERDVFIGAGLVDMYSKMGDLKRA 169
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
+VFD+ P+++ V+ WN +I G S+ A +F M ++ SW +++ G+
Sbjct: 170 REVFDKMPKRD----VVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHN 225
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G + ELF++M + G V+W +I + QNG A++A++ F QM N T VS L
Sbjct: 226 GCFVEVLELFDKM-KLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 284
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A A + A G+ H I F +G +L+DMYAKCG ++ + +F E KD +
Sbjct: 285 PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV 344
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W AM+ G A+HG ++AI F M S + D F+++L+AC ++G V+ F SM
Sbjct: 345 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM 404
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
Y I+P ++H+ +V+LL R G D+ L FI MP PD +WGAL +CR H + K+
Sbjct: 405 SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 464
Query: 484 AKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
++AL L P + Q G
Sbjct: 465 GEVALDHLVKLEPRNPAHFVVLSSIYAQSG 494
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 18/231 (7%)
Query: 51 HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110
HA II +++ + LI + +DY+ +F+ K+ +N ++ G A + H
Sbjct: 300 HACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHG 359
Query: 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVH 169
I+ F M V+ + +++ V + L+ GR + H + K ++ D
Sbjct: 360 DRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYAC 419
Query: 170 LADMYVQLG---KTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFG 223
+ D+ + G +T G KV P+ +W L+ C S + A++
Sbjct: 420 MVDLLGRAGLFDETLGFIKVMPVEPDAG------VWGALLGSCRMHSNVKLGEVALDHLV 473
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
+ +N A +V L + + G AG+ +M + G+ SW + N
Sbjct: 474 KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 524
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 254/486 (52%), Gaps = 40/486 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS-IFDHFTPKNL 94
+L S L QIHA+II L + + ISS+S S S +F+
Sbjct: 15 TLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGT 74
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+++N LI+G + F +S + M+R + RP+ T+P V K ++ + +G +H
Sbjct: 75 YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHG 134
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
L+++ G + D V D Y + A KVF E PE+N + W L+ K G
Sbjct: 135 LVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERN----AVSWTALVVAYVKSG 190
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS- 272
L +A +F +MP++N+ SW +L+DG ++ GDL A +LF++MP++ ++S+T+MI+G++
Sbjct: 191 ELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
Query: 273 ------------------------------QNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
QNG+ +A +F +M V+ ++F +V
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310
Query: 303 LSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
+SAC+++G E +V +Y+ N F + AL+DM AKCG+++ A+ +F E ++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVV-PALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL+++ +M+ G+AIHG +AI+ F+KM+ G PD F IL C S V+ L +F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+ MR Y I S H++ +VNLLSR G++ +A I MP WG+L C H +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 481 TKIAKI 486
T+IA++
Sbjct: 490 TEIAEV 495
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 46/467 (9%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID-----YAL 83
+ E ++S++H Q++Q+HA II + L S + T+LI + +D Y L
Sbjct: 40 LLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPL 96
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F N ++ +IRG A + + M R V P T+ + K+ +
Sbjct: 97 LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156
Query: 144 LLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ LG+ +H I+ G D +V + D+YV
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYV--------------------------- 189
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
K G+L A ++F M +++V SW LI + + GD++ A LF+ +P K +V
Sbjct: 190 --------KCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMV 241
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+WTAM+ G++QNG ++AL F +M D G+ ++ T+ +SACA++GA++ + +
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301
Query: 323 SCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ FG G +G+AL+DMY+KCG+ + A VF KE+++ ++++MI G A+HGR
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+Q F M+ + P+ F+ IL+AC ++G V+ F M + + PS H+ +V
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMV 421
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +++AL+ + MP P+ +WGAL ACR H + IA+IA
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + LI S S D A +F+ +N+ ++ +I G A + S + F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGA 183
+RPN++T+ + + + L+ GR L + K GV + D+ + G A
Sbjct: 374 IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEA 433
Query: 184 FKVFDETP-EKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLID 238
+ P E N +W L+ C G A ELF + P + +++ L +
Sbjct: 434 LDLVKTMPMEPNGG----VWGALLGACRIHGNPDIAQIAANELFKLEP-NGIGNYILLSN 488
Query: 239 GFMRKGDLKKAGELFEQMPEKGV-----VSWTAMING 270
+ G ++ +L + + EKG SW NG
Sbjct: 489 IYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 245/484 (50%), Gaps = 37/484 (7%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
NR+ + S+ S+ + + I S++ S S + L + HAQI++ + I
Sbjct: 3 NRIVPILRENATAISAIGRSSRVRQQFIFSVLKSCVSFRNLAKTHAQIVVSGFSQKNYIL 62
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
L+S S+ A +F+ T + ++N +I+G + + I F M V
Sbjct: 63 NHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVE 122
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
N TY F+ + L G +H ++ +G + +VR +L ++Y G G F
Sbjct: 123 ANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYAN-GGDGGDFD- 180
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
L++A+ LF MP NV W SL+ G++R+GD
Sbjct: 181 ----------------------------LKRALYLFDEMPDSNVVGWNSLLAGYVRRGDF 212
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A ++F++MPE+ V +WT M+ GF+QNG+ + AL++F QM AGV + +V+ALSAC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272
Query: 307 AKVGALEAGVRVHNYIS----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
A++G L G +H Y+ + ++ AL+ MYA CG ++ A +F E +++
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNT 332
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG---TEPDGTVFLAILTACWYSGQVKLALNF 419
++W+++I G A G +AI+ F+ M+ SG PD F+ LTAC ++G + +
Sbjct: 333 VSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRL 392
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM + + P ++H+ +V+LLSR G + +AL+ I MP P+ +WGAL CR HK
Sbjct: 393 FQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHK 452
Query: 480 DTKI 483
+ +I
Sbjct: 453 NDEI 456
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 254/467 (54%), Gaps = 15/467 (3%)
Query: 30 TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
T + S + +S + L +Q HA IL++L + + + +I+ S I+ A +F
Sbjct: 1377 TRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF 1436
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
K++ +N+LI ++ ++ M ++R + +T + + A S +
Sbjct: 1437 SRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIK 1496
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LG+ HC ++ +E D V + DMY + + A KVFD T E++ ++LWN L+
Sbjct: 1497 LGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERD----LVLWNTLL 1552
Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-- 260
+++G +A++LF M NV SW S+I GF+R G + +A ++F QM G
Sbjct: 1553 AAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQ 1612
Query: 261 --VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+++WT +I+G +Q+G +A+ F +M +AG+R + ++ S L AC + +L G +
Sbjct: 1613 PNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAI 1672
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H +I+ ++F L + T+LVDMYAKCG+I+ A VF K+L + AMI A+HG+
Sbjct: 1673 HGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQA 1732
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A+ FK + G EPD F +IL+AC ++G V LN F M + + P ++H+
Sbjct: 1733 VEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGC 1792
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
VV+LLSR G +D+AL I MP PD I G+L ACR H + ++ +
Sbjct: 1793 VVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGE 1839
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 220/472 (46%), Gaps = 49/472 (10%)
Query: 48 RQIHAQIILH-NLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + + FA + + T+L+ + + A+ +F +N+ + ++
Sbjct: 1194 QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQC 1253
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F+ M V P+ P V K+ SL L+ LG+G+H ++K G F
Sbjct: 1254 RMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 1313
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V L DMY + G A KVFD EKN V+ WN +I G + G ++A+++F
Sbjct: 1314 VSSSLVDMYGKCGVLEDARKVFDSMVEKN----VVTWNSMIVGYVQNGLNQEAIDVFYDM 1369
Query: 223 ---GMMPKK-NVASWVS-------LIDG-------------------------FMRKGDL 246
G+ P + VAS++S LI+G + + G +
Sbjct: 1370 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 1429
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F +M EK VV+W +I+ + Q+ + KAL M M +R + T+ S LSA
Sbjct: 1430 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 1489
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A ++ G H Y + + +++DMYAKC I+ A VF T E+DL+ W
Sbjct: 1490 AVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWN 1549
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M + P+ + +++ +GQV A + F M+
Sbjct: 1550 TLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL 1609
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
F +P++ T +++ L++ G +A+ F KM E P ++ AC
Sbjct: 1610 GF-QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLAC 1660
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 13/245 (5%)
Query: 240 FMRKGDLKK-AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
F K D + A LF ++ + V SW A++ + G +E AL F +M + GV ++F
Sbjct: 1220 FYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFV 1279
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ + L AC + + G VH Y+ FG + ++LVDMY KCG +E A VF
Sbjct: 1280 LPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMV 1339
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-----CWYSGQV 413
EK+++TW +MI G +G ++AI F M G EP + L+A G+
Sbjct: 1340 EKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQ 1399
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
A+ +S+ D + S ++N S+VG ++ A ++M E D V W L
Sbjct: 1400 GHAIAILNSLDLDNILGSS------IINFYSKVGLIEDAELVFSRMLEK-DVVTWNLLIS 1452
Query: 474 ACRTH 478
+ H
Sbjct: 1453 SYVQH 1457
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/524 (29%), Positives = 255/524 (48%), Gaps = 75/524 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRG 103
+ ++++HA +++ L +++I S +L +S + +A +F+ ++N L+RG
Sbjct: 325 EAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRG 384
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
LA++ + I + ++P+ +T+PFV K+ A G +H ++K G D
Sbjct: 385 LAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLD 444
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
FV L +Y G A +FDE K+ V+ WN LI G S+ ++ + LF
Sbjct: 445 IFVSNSLIHLYAACGDLVCARSIFDEMLVKD----VVSWNSLIGGYSQRNRFKEVLALFE 500
Query: 224 MMPKKNV-----------------ASWV----------------------SLIDGFMRKG 244
+M + V W +LID + R G
Sbjct: 501 LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIG 560
Query: 245 DLKKAGELFEQM-------------------------------PEKGVVSWTAMINGFSQ 273
L+ A ++F QM P K ++SW++MI +SQ
Sbjct: 561 QLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQ 620
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+L +F QM A V+ + + S LSACA +GAL+ G +H+Y+ N+ +
Sbjct: 621 ASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIM 680
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+L+DM+AKCG ++ A VF E +EKD L+W ++I GLA +G ++A+ F M+ G
Sbjct: 681 ENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGP 740
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ FL +L AC V+ L+ F+ M+ + +EP +KH+ VV +LSR GQ++KA
Sbjct: 741 RPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAK 800
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
NFIN+MP PD V+W L AC+TH + +A++A + L+ S
Sbjct: 801 NFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPS 844
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 158/266 (59%), Gaps = 1/266 (0%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP KNV SW +I GF G+++ A LF+QMP + VVSWT +I+G+++ +A+A+F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M+ G+ ++ TV++ + A + +G + G +H Y +G +L+D+YAK
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 345 GNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G+++ + VF E ++L++WT++I G A+HG +A++ F +M +G P+ FL++
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
+ AC + G V+ L FF SM ++Y I+P +KH ++++L R G++ +A I +P
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQ 489
+ ++W L C + + ++ K A++
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIK 266
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 80/405 (19%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I+YA +FD +N+ + LI G + ++ F M+ + P+ +T V
Sbjct: 21 EIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVP 80
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++++L + +G LH VK G+ DA V L D+Y ++G + + KVFDE ++
Sbjct: 81 AISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDR---R 137
Query: 198 SVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------------- 228
+++ W +I+G + G +A+ELF G+ P +
Sbjct: 138 NLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFF 197
Query: 229 -----------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE 276
+ + +ID R G L +A ++ E +P E V+ W ++ S+ GE
Sbjct: 198 KSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGE 257
Query: 277 AE---KALAMFFQMLDAGVRANDFTVVS------------------------------AL 303
E +A+ M + DF V+S AL
Sbjct: 258 VEMGKRAIKMISDLERES--GGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLAL 315
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA-KCGNIEAASLVFGETKEKDL 362
+EA ++H ++ + + ++ YA + ++ A VF + +
Sbjct: 316 VVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTT 375
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
W ++ GLA + AI ++KK G +PD F +L AC
Sbjct: 376 FLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKAC 420
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 256/516 (49%), Gaps = 56/516 (10%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS----------RITTQLISSASL 75
S N E + L+ S S ++++QIHA II N S+ +IT+ L L
Sbjct: 21 SANFHEFPQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHL 80
Query: 76 HKSID---YALSIFDHFTPKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLT 131
SI YA S+ + ++IFN +I+ L+ N+ F S + ML + + P+ T
Sbjct: 81 ADSIQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYT 140
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
P++ K+ + +H +K+G+ + FV+ L Y G KVFD+ P
Sbjct: 141 LPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGP 200
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-----------------------KK 228
+ ++ W LI SK+GY +A+ F M K
Sbjct: 201 HWD----LISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGK 256
Query: 229 NVASWV---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ +++ +L+D +++ G A +LF MP K +VSW +MI+G +
Sbjct: 257 KILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAH 316
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G ++AL MF +M G++ + T+V L++CA +G LE G VH+YI N G +
Sbjct: 317 QGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYV 376
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
ALVDMYAKCG+I+ A +VF K KD+ ++TAMI G A+HG+ ++A+ F +M G
Sbjct: 377 ANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGV 436
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD + +L+AC ++G ++ F M Y ++P +H+ +V+LL R G + +A
Sbjct: 437 RPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAE 496
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
F NKMP PD +WG+L AC+ H ++ + +Q
Sbjct: 497 AFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQ 532
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 173/403 (42%), Gaps = 64/403 (15%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
QIHA I L ++ + L+ ++ I+ +FD +L + LI+ ++
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMG 218
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS--GVEYDAFV 166
+ I+ F R++ +R+T V + + L +LG+ + + V D F+
Sbjct: 219 YPSEAIAAF---FRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFL 275
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L DMY++ G+ A ++F P KN ++ WN +I+G + G ++A+ +F
Sbjct: 276 GNALLDMYLKCGQPHLARQLFHLMPVKN----LVSWNSMISGLAHQGLFKEALHMFRRMQ 331
Query: 223 --GMMPKK----------------NVASWV-----------------SLIDGFMRKGDLK 247
G+ P + WV +L+D + + G +
Sbjct: 332 TMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSID 391
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +F+ M K V S+TAMI GF+ +G+A++ALA+F +M GVR + T+V LSAC+
Sbjct: 392 QAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACS 451
Query: 308 KVGALEAGVR--------VHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETK 358
G LE G R H +G +VD+ + G I EA +
Sbjct: 452 HAGLLEEGRRHFQDMSRLYHLQPQTEHYG-------CMVDLLGRAGLISEAEAFTNKMPI 504
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
D W +++ IH + E +K++ E DG L
Sbjct: 505 VPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYIL 547
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 169/559 (30%), Positives = 276/559 (49%), Gaps = 80/559 (14%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKS- 78
+ +P N+ T + L+ + QIHA+++ ++ +TT++I S SLH
Sbjct: 8 NQQPWNSAIPT--LVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPL 65
Query: 79 IDYALSIF-DHFTPKNLH----------IFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
I++A IF H + ++N +I+ + + + ML
Sbjct: 66 IEFARFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFA 125
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLH----------------CLI---VKSGV-------- 160
++ T V K+ + + L+ G +H CLI VK G
Sbjct: 126 DKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVF 185
Query: 161 ----EYDAFVRVHLADMYVQLGKTRGAFKVFDETP--EKN------------KSESVLL- 201
+ D+ + D YV+ G+ A VFD P E+N +SE +L
Sbjct: 186 DRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILV 245
Query: 202 ---------------WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
WN +I+GC K G + A LF MP +++ SW ++IDG+ + G +
Sbjct: 246 AWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRV 305
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSA 305
A LF++MPE+ VV++ AM+ G+ QNG +AL +F+ M D ++ T++ ALSA
Sbjct: 306 DIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSA 365
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++G ++ GV +H +I F L G +G AL+DMY+KCG+IE A +VF KEK + W
Sbjct: 366 IAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHW 425
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
A+I GLAIHG E A + +M EPD F+ +L AC ++G VK + F+ MR
Sbjct: 426 NAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRR 485
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +EP ++H+ +V++L R G +++A NF+ +MP P+ VIW +L AC+TH+ + +
Sbjct: 486 VHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQ 545
Query: 486 IALQSSCSLNLSIPQAMSY 504
++ + L P SY
Sbjct: 546 PVAEN--LMRLDSPSPSSY 562
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 248/489 (50%), Gaps = 44/489 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S++ K L+QIHAQII L ++ ++ L+++ + A IF H KN+
Sbjct: 29 SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVV 88
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ +LI GLA+N F I F M+ + +PN +T V + A+L L+ + + +HC
Sbjct: 89 SWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V+ G E + FV L DMY + G A ++F+ E+N V+ WN +++G S G+
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERN----VVTWNAIVSGYSDHGFS 204
Query: 216 RKAVELFGMMPKKNV------------ASW---------------------------VSL 236
+A++LF +M +K + AS +L
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRAN 295
+D ++ + A +F +M K V +WT M+ GFS ++A+ F +ML ++ +
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLD 324
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
++ LS+C+ GAL+ G RVH F +G+A++DMYA CGN+E A F
Sbjct: 325 SIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFY 384
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
EKD++ W AMI G ++G AI F +M SG +PD + F+++L AC ++G V
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
L F M + P+++H+ V+++L R GQ+D A +FIN MP PDF ++ L AC
Sbjct: 445 GLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGAC 504
Query: 476 RTHKDTKIA 484
R H + K+
Sbjct: 505 RIHGNIKLG 513
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 164/380 (43%), Gaps = 42/380 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L+ S + A +F+ + +N+ +N ++ G +++ + I F M R
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKG 218
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ + T + + S+ L +G G+H I+++G E D ++ L D+YV A
Sbjct: 219 LLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAH 278
Query: 185 KVFDETPEKN---------------------------------KSESVLLWNVLINGCSK 211
+VF E K+ K +S+ L +L + CS
Sbjct: 279 RVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGIL-SSCSH 337
Query: 212 IGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G L++ + + K N+ ++ID + G+L+ A F M EK VV W AM
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G NG A+ +F QM +G+ ++ T VS L AC+ G + G+++ ++
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457
Query: 328 GLKGAIGTA-LVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ A ++D+ + G ++AA S + + D ++ ++ IHG + +
Sbjct: 458 VIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517
Query: 386 KKMMYSGTEPDGTVFLAILT 405
+K+ EP+ + +L+
Sbjct: 518 QKIF--EMEPNDAGYYVLLS 535
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/480 (29%), Positives = 245/480 (51%), Gaps = 51/480 (10%)
Query: 11 TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
+A+ P + K + P+ H ISL+ + Q+ I+A+II ++ + +L+
Sbjct: 15 SALPPNSGTKPKNTPNR---RRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELL 71
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
S SI YA IF H N++++ LI GL + ++ I + M+ S+ P+
Sbjct: 72 RVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSY 131
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
V K+ L GR +H ++K G+ + +R+ L ++Y + G A +VFDE
Sbjct: 132 AVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDE- 190
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
MP+++V + +I+ + G
Sbjct: 191 ----------------------------------MPERDVVASTVMINYYFDHGI----- 211
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
K V WTAMI+G +NGE+ +AL +F M V N+ T+V LSAC+++G
Sbjct: 212 --------KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELG 263
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
AL+ G V +Y+ + L +G AL++MY++CG+I+ A VF + KEK+++T+ +MI
Sbjct: 264 ALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIM 323
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G A+HG+ +A++ F+ ++ G P F+ +L AC + G +L F SM DY IE
Sbjct: 324 GFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIE 383
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +V+LL R+G++++A +FI M PD V+ GAL AC+ H + ++A+ +S
Sbjct: 384 PQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKS 443
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 233/451 (51%), Gaps = 45/451 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LIS ++ + A FD +N+ + ++RG + + F M N
Sbjct: 84 LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKN 139
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+++ + + + + RGL ++ VK D R ++ Y Q G+ A ++F
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVK-----DVVARTNMISGYCQEGRLAEARELF 194
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE P +N V+ W +I+G + G + A +LF +MP+KN SW +++ G+ + G ++
Sbjct: 195 DEMPRRN----VISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIE 250
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ--------------------- 286
+A ELF+ MP K VV+ AMI GF QNGE KA +F Q
Sbjct: 251 EASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGF 310
Query: 287 ----------MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
M GV++N +++S LS CA + +L+ G +VH + + F + +
Sbjct: 311 EVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASV 370
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+ MY KCG++ A +F KD++ W ++I G A HG E+A+Q F +M SG D
Sbjct: 371 LITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATD 430
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
G F+ +L+AC Y+G+VK L F+SM+ Y +EP +H+ +V+LL R G V+ A++ I
Sbjct: 431 GVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLI 490
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
KMP D +IWGAL ACRTH + +A++A
Sbjct: 491 QKMPVEADAIIWGALLGACRTHMNMNLAEVA 521
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 198/434 (45%), Gaps = 52/434 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
I+ A +FD K + +N ++ G +N+ + F M R +V N L +V
Sbjct: 32 IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKN 91
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ S + + + ++ V + A VR YVQ G A +F + PEKN
Sbjct: 92 RMVSEAR----KAFDTMPERNVVSWTAMVR-----GYVQEGLVSEAETLFWQMPEKN--- 139
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
V+ W V++ G ++ + +A LF +MP K+V + ++I G+ ++G L +A ELF++MP
Sbjct: 140 -VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA--- 314
+ V+SWT MI+G+ QNG+ + A +F M + N+ + + L + G +E
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGYTQGGRIEEASE 254
Query: 315 ---GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ V ++CN A++ + + G + A VF + +EKD TW+AMI
Sbjct: 255 LFDAMPVKAVVACN----------AMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW------YSGQV--KLALNFFDSM 423
G +A+ F M G + + +++L+ C + QV +L + FDS
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDS- 363
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
D F+ +V++ + + G + KA ++ D V+W ++ H +
Sbjct: 364 --DVFVA------SVLITMYVKCGDLVKARQIFDRF-SPKDIVMWNSIITGYAQHGLVEE 414
Query: 484 AKIALQSSCSLNLS 497
A CS ++
Sbjct: 415 ALQVFHEMCSSGMA 428
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 152/299 (50%), Gaps = 22/299 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y ++G+ A +VFDE P+K ++ WN ++ G + R+A LF MP++N SW
Sbjct: 26 YARIGQIESARRVFDEMPDKG----IVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSW 81
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
LI G+++ + +A + F+ MPE+ VVSWTAM+ G+ Q G +A +F+QM + V
Sbjct: 82 NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ +TV+ L +V ++ + + + D + T ++ Y + G + A +
Sbjct: 142 S--WTVM--LGGLIQVRRIDEARGLFDIMPVKDVVAR----TNMISGYCQEGRLAEAREL 193
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E +++++WT MI G +G+ + A + F+ M E + + A+L G++
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRI 249
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ A FD+M ++ V + +++ + G+V KA +++ E D W A+
Sbjct: 250 EEASELFDAMP----VKAVVACNAMILG-FGQNGEVAKARQVFDQIREKDDGT-WSAMI 302
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 30/272 (11%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDY 81
SN + ++S+ S S RQ+HA+++ ++F +S + T + L K
Sbjct: 328 SNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVK---- 383
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A IFD F+PK++ ++N +I G A++ + + F M + + +T+ V + +
Sbjct: 384 ARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSY 443
Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ G + + K VE + D+ + G A + + P + + +
Sbjct: 444 TGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADA---I 500
Query: 201 LWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+W L+ C + A + + KN ++ L + + KG EL M
Sbjct: 501 IWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMR 560
Query: 258 EKGV-----VSWTAMINGFSQNGEAEKALAMF 284
K V SW E EK + MF
Sbjct: 561 VKKVSKSPGCSWI----------EVEKRVHMF 582
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 242/454 (53%), Gaps = 44/454 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
I +S+S ++ QIHA I+ HNL R + +L + + H I ++L++F +
Sbjct: 33 FIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 92
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +F I + N +V +L + PN T+ + KS ++ S G+ +H
Sbjct: 93 LFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHT 148
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G+ D +V L D+Y + G A KVFD
Sbjct: 149 HVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDR------------------------ 184
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP++++ S ++I + ++G+++ A LF++M E+ +VSW MI+G+SQ
Sbjct: 185 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQ 233
Query: 274 NGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+G AL +F ++L D + ++ TVV+ALSAC+++GALE G +H +++ + L
Sbjct: 234 HGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVK 293
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
+ TAL+DMY+KCG++E A LVF +T KD++ W AMI G A+HG + A++ F +M +
Sbjct: 294 VCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGIT 353
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +P F+ L AC ++G V + F+SM +Y I+P ++H+ +V+LL R GQ+ +
Sbjct: 354 GLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 413
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A I M D V+W ++ +C+ H + + K
Sbjct: 414 AYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGK 447
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 138/311 (44%), Gaps = 23/311 (7%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS- 124
+T +I+ + +++ A ++FD +++ +NV+I G +++ + F +L
Sbjct: 193 STAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGK 252
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+P+ +T + + + L GR +H + S + + V L DMY + G A
Sbjct: 253 PKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAV 312
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSLI 237
VF++TP K+ ++ WN +I G + GY + A+ LF G+ P +++ +
Sbjct: 313 LVFNDTPRKD----IVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTD--ITFIGTL 366
Query: 238 DGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
G + + ++FE M ++ + + +++ + G+ ++A + M +
Sbjct: 367 QACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNM---NM 423
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
A+ S L +C G G + Y+ + G I L ++YA G+ E +
Sbjct: 424 EADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSG-IYVLLSNIYALVGDYEGVAK 482
Query: 353 VFGETKEKDLL 363
V KEK ++
Sbjct: 483 VRNLMKEKGIV 493
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/515 (29%), Positives = 252/515 (48%), Gaps = 44/515 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP +T H++S +S++ + IH I+ + ++ + L++ S+ A
Sbjct: 428 KPGR-VTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
++F+ +++ +N +I G A++ +++ F M + P+ +T+ V +
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LG+ +H I +SG++ D + L +MY++ G + A VF ++ V+ W
Sbjct: 547 ALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRD----VMSWT 602
Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
+I GC+ G KA+ELF G P K+ S +
Sbjct: 603 AMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNS 662
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+LI + + G + A E+F++MP + +VSW +I G++QNG + A+
Sbjct: 663 GYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFA 722
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+QM + V N F+ VS L+AC+ ALE G RVH I +G AL+ MYAKC
Sbjct: 723 YQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKC 782
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G+ A VF EK+++TW AMI A HG +A+ +F M G +PDG+ F +IL
Sbjct: 783 GSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSIL 842
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC ++G V F SM +Y + P+++H+ +V LL R + +A IN+MP PD
Sbjct: 843 SACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPD 902
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
+W L ACR H + +A+ A ++ LN P
Sbjct: 903 AAVWETLLGACRIHGNIALAEHAANNALKLNARNP 937
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 125/488 (25%), Positives = 229/488 (46%), Gaps = 45/488 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT I++ +S + ++IH+QII R+ L+S + A +F
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+P+++ +N ++ A+ ++ + C+ F M + P+++TY + + + S+L
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H L V+ G+ D V L M V+ G A + F T +++ V+++N LI
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRD----VVVYNALI 302
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLI---------------------DG-- 239
++ G+ +A E + M VA +++S++ DG
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362
Query: 240 ------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+ R GDL KA ELF MP++ ++SW A+I G+++ + +A+ ++ QM
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
GV+ T + LSACA A G +H I + G + AL++MY +CG++
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A VF T+ +D+++W +MI G A HG YE A + F++M EPD F ++L+ C
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++L + + ++ V ++N+ R G + A N + + + D +
Sbjct: 543 KNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMS 600
Query: 468 WGALFCAC 475
W A+ C
Sbjct: 601 WTAMIGGC 608
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 234/515 (45%), Gaps = 59/515 (11%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSA 73
++ ++H+P TE + + + K+L ++IHAQ++ + ++ LI+
Sbjct: 13 DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMY 72
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
+S+ A +F +++ +N LI A+ + F M PN++TY
Sbjct: 73 VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132
Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
+ + S + L G+ +H I+K+G + D V+ L MY + G A +VF +
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR 192
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGF--------- 240
+ V+ +N ++ ++ Y+++ + LFG M + ++ ++++L+D F
Sbjct: 193 D----VVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248
Query: 241 --------------------------MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+R GD+ A + F+ ++ VV + A+I +Q+
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G +A +++M GV N T +S L+AC+ ALEAG +H++IS + IG
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
AL+ MYA+CG++ A +F ++DL++W A+I G A +A++ +K+M G +
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHH----TVVVNLLSRVGQV 449
P FL +L+AC S + D M + + +K + ++N+ R G +
Sbjct: 429 PGRVTFLHLLSACANSSA------YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+A N + D + W ++ H + A
Sbjct: 483 MEAQNVFEGT-QARDVISWNSMIAGHAQHGSYETA 516
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/523 (29%), Positives = 260/523 (49%), Gaps = 70/523 (13%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E ++I L+H S QL+QI A II+ L + +L++++ I YA +FD
Sbjct: 2 ERYLIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASF----IQYARQVFDQIP 57
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+ + I + S + FV M + +VR T P + KS ASL + +G+
Sbjct: 58 HPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQ 117
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD---------------------- 188
+H L+++ G F + L + Y ++ A +FD
Sbjct: 118 VHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGE 177
Query: 189 -----ETPEKNKSESVLLWNVLI-----NG------------------------------ 208
E +K + S++ WN +I NG
Sbjct: 178 VLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSI 237
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
C+K+G L + + + KN+ S + ++++ +++ G + +F+ M + VV+W
Sbjct: 238 CAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTW 297
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+AMI G++QNG + +AL +F M A ++ ND T+VS LSACA++G++E G R+ +Y+
Sbjct: 298 SAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVES 357
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ +AL+ MY+KCGNI A +F + ++D +TW +MI GLAI+G E AI
Sbjct: 358 RGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIAL 417
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
+ +M +P+ F+ ++TAC ++G V+L L FF SMR D+ I P+++H +V+L
Sbjct: 418 YNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFC 477
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G++ A FI +M P+ VIWG L A R H + ++A++A
Sbjct: 478 RSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELA 520
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 115/265 (43%), Gaps = 21/265 (7%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+ N+KS+ N++T ++S S + +I + + L ++ + +
Sbjct: 309 RSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVAS 368
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ S +I A IFD ++ +N +I GLA N + I+ + M + V+P
Sbjct: 369 ALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKP 428
Query: 128 NRLTYPFVSKSVASLSLLSLG-------RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
N +T+ + + + LG R H + +E+ A + D++ + G+
Sbjct: 429 NNITFVGLMTACTHAGHVELGLEFFRSMRSDHN--ISPNIEHFACI----VDLFCRSGRL 482
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM----MPKKNVASWVSL 236
A++ + +V++W L++ S+I + EL G + N ++V L
Sbjct: 483 IDAYEFICRMEVE---PNVVIWGTLLSA-SRIHLNVELAELAGKKLLELEPDNSGNYVIL 538
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGV 261
+ + G ++A ++ + M +K V
Sbjct: 539 SNIYASAGRWQEALKVRKLMKDKRV 563
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 231/454 (50%), Gaps = 5/454 (1%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H++ S S + ++IH + + A S + +L + A +FD
Sbjct: 13 HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ ++N +IR A N F I + ML L VRPN+ TYPFV K+ + L + G +H
Sbjct: 73 SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
G+E D FV L D Y + G A ++F ++ V+ WN +I GCS
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD----VVAWNAMIAGCSLY 188
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD-LKKAGELFEQMPEKGVVSWTAMINGF 271
G AV+L M ++ + S I G + L A ++F+ M + VSW+AMI G+
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGY 248
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ ++AL +F M +G+ + T++ L AC+ + AL+ G H Y+ F
Sbjct: 249 VASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 308
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
I AL+DMY+KCG I A VF D+++W AMI G IHG +A+ F ++
Sbjct: 309 LICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 368
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +PD F+ +L++C +SG V +FD+M D+ I P ++H +V++L R G +D+
Sbjct: 369 GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDE 428
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A +FI MP PD IW AL ACR HK+ ++ +
Sbjct: 429 AHHFIRNMPFEPDVRIWSALLSACRIHKNIELGE 462
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+LID + + G + A E+F +M +VSW AMI G+ +G +AL +F +L G++
Sbjct: 313 ALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 372
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAAS 351
+D T + LS+C+ G + G + +S DF + + +VD+ + G I EA
Sbjct: 373 DDITFICLLSSCSHSGLVMEGRLWFDAMS-RDFSIVPRMEHCICMVDILGRAGLIDEAHH 431
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+ E D+ W+A++ IH E + KK+ G E G L
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVL 481
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 41/465 (8%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSI-DYALSI 85
+ E ++ ++ +S Q +++HAQI + NL SS + T+L+ +A H + Y +
Sbjct: 6 VLEWEVVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLL 65
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F N + LIR A +S + M + V P T+ + + A++
Sbjct: 66 FSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHS 125
Query: 146 SLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+LG LH ++ G D +V + DMYV
Sbjct: 126 ALGAQLHAQTLLLGGFSSDLYVNNAVIDMYV----------------------------- 156
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
K G LR A +F MP+++V SW LI + R GD++ A +LF+ +P K +V+W
Sbjct: 157 ------KCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTW 210
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
TAM+ G++QN AL +F ++ D GV ++ T+V +SACA++GA + + +
Sbjct: 211 TAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAES 270
Query: 325 NDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ FG+ +G+AL+DMY+KCGN+E A VF +E+++ ++++MI G AIHGR AI
Sbjct: 271 SGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAI 330
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M+ +G +P+ F+ +LTAC ++G V F SM Y + P+ + + + +L
Sbjct: 331 KLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDL 390
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
LSR G ++KAL + MP D +WGAL A H + +A+IA
Sbjct: 391 LSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIA 435
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 7/196 (3%)
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS- 351
R ++ VV L C+ +L VH I + + T L+ + ++ S
Sbjct: 5 RVLEWEVVRILERCS---SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSY 61
Query: 352 --LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
L+F + + WTA+I A+ G QA+ ++ M P F A+ +AC
Sbjct: 62 PRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAA 121
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
L + + V+++ + G + A ++MPE D + W
Sbjct: 122 VRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPER-DVISWT 180
Query: 470 ALFCACRTHKDTKIAK 485
L A D + A+
Sbjct: 181 GLIVAYTRIGDMRAAR 196
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 46/467 (9%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID-----YAL 83
+ E ++S++H Q++Q+HA II + L S + T+LI + +D Y L
Sbjct: 40 LLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPL 96
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F N ++ +IRG A + + M R V P T+ + K+ +
Sbjct: 97 LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156
Query: 144 LLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ LG+ +H I+ G D +V + D+YV
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYV--------------------------- 189
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
K G+L A ++F M +++V SW LI + + GD++ A LF+ +P K +V
Sbjct: 190 --------KCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMV 241
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+WTAM+ G++QNG ++AL F +M D G+ ++ T+ +SACA++GA++ + +
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301
Query: 323 SCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ FG G +G+AL+DMY+KCG+ + A VF KE+++ ++++MI G A+HGR
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+Q F M+ + P+ F+ IL+AC ++G V+ F M + + PS H+ +V
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMV 421
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +++AL+ + MP P+ +WGAL ACR H + IA+IA
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + LI S S D A +F+ +N+ ++ +I G A + S + F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGA 183
+RPN++T+ + + + L+ GR L + K GV + D+ + G A
Sbjct: 374 IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEA 433
Query: 184 FKVFDETP-EKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLID 238
+ P E N +W L+ C G A ELF + P + +++ L +
Sbjct: 434 LDLVKTMPMEPNGG----VWGALLGACRIHGNPDIAQIAANELFKLEP-NGIGNYILLSN 488
Query: 239 GFMRKGDLKKAGELFEQMPEKGV-----VSWTAMING 270
+ G ++ +L + + EKG SW NG
Sbjct: 489 IYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 230/453 (50%), Gaps = 41/453 (9%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
+ + L+ IHA NL + + ++ ++ S + + YA +F N +N L
Sbjct: 7 TMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTL 66
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLSLLSLGRGLHCLIV 156
IRG +++S + F M R V P+ T+ F+ S+ L L+ +H ++
Sbjct: 67 IRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVL 126
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G + FV L +Y G A +VF+E
Sbjct: 127 KLGFCFHLFVMNALIHLYAARGVPAAAHQVFNE--------------------------- 159
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
M +V SW L+ +R G+L+ A ++F +MPE+ VVSWT M++G++Q
Sbjct: 160 --------MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKR 211
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+ +AL +F +M D GVR ++ +VS +SAC +G LE G VH YI N FG ++ A
Sbjct: 212 SREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNA 271
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMYAKCG ++ A VF + K L+TW +MI A HG E A + F M+YSG PD
Sbjct: 272 LIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPD 331
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
G FLA+LTA + G V F+SM+ DY +E V+H+ +V++L R G++++A I
Sbjct: 332 GVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLI 391
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
M + V+WGAL ACR + D ++ + L+
Sbjct: 392 TSMSMPCNDVVWGALLAACRIYGDVEMGERVLK 424
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 243/448 (54%), Gaps = 39/448 (8%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
++ +++HA +I L +LI+ S S+ +A +FD + +++N + R
Sbjct: 2 QEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRV 61
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A + + M R P+ T+PF+ K+ ++L+ L G+ LHC +K G+
Sbjct: 62 YAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGH 121
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
FV L +Y + A +VFD +GY
Sbjct: 122 VFVENSLIHLYGSNSRMDSARRVFD----------------------GMGY--------- 150
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+++ASW +L+ + ++ A ++F++MPE+ VVS++AM+ + + +AL +
Sbjct: 151 ----RDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALEL 206
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMY 341
F ++ + +D V+S L ACA +GAL+ G V++++ C+ G + I TAL+DM+
Sbjct: 207 FRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFV-CHSKGDYVDSRIATALIDMF 265
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
KCG+IE A LVF KEK + WTAM+ GLA+HG EQ I+ F+KM+ SG +PD F+
Sbjct: 266 FKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFV 325
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
A+L+ C +SG V L +FD M D+ +EP+V+H VV+LL R G +D+A+ I++MP
Sbjct: 326 ALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPF 385
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIALQ 489
P+ IWGAL ACR +K+ ++ ++A Q
Sbjct: 386 EPNAAIWGALLNACRVYKNVEVGELAAQ 413
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 241/467 (51%), Gaps = 16/467 (3%)
Query: 35 ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
I LI + + L R +HA++I+ + + I+ + I A +FD
Sbjct: 32 IELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPR 91
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
N + VLI + ++ +S F + R +RP+ P V K+ LS + GR L
Sbjct: 92 TNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKL 151
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H LI+K+ +E DA+V L DMY + G+ A +VF+ K+ ++ N +++G +
Sbjct: 152 HTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKD----LVALNAMVSGYAH 207
Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVS 263
G +A+ L M K N+ +W +L+ GF + G+ + ELF++M G VVS
Sbjct: 208 HGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPDVVS 267
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT++I+GF QN E+A F +ML+AG T+ S L ACA VG G +H +
Sbjct: 268 WTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSL 327
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+ TALVDMYAKCG A ++F E++ TW +MI+G A HG +AI+
Sbjct: 328 ALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNEAIE 387
Query: 384 YFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F +M + D F AILTAC ++G V L + F M+ Y I P V+H+ +V++
Sbjct: 388 LFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVEHYACMVDV 447
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G++ +A + I MP PD +WGAL ACR H + ++A+ A +
Sbjct: 448 FGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKHGEIELAEEAAK 494
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 181/395 (45%), Gaps = 13/395 (3%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
+PS I + + + H S T R++H I+ ++L + + + + LI + ++ A
Sbjct: 126 RPSEYIIPSVLKACGHLSEKTTG-RKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKAR 184
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F+ K+L N ++ G A + + ++ M L ++PN +T+ + + +
Sbjct: 185 RVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIG 244
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ R L + +G+E D + +VQ + AF F + +
Sbjct: 245 EEEMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATIS 304
Query: 204 VLINGCSKIGYLRKAVELFG----MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ C+ +G R E+ G + +K+V +L+D + + G +A LF +M E+
Sbjct: 305 SLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSER 364
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRV 318
+W +MI G++ +G +A+ +F QM D + D T + L+ACA G ++ G +
Sbjct: 365 NSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSL 424
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ + +G+ + +VD++ + G + EA L+ + DL W A++ H
Sbjct: 425 FQLMQ-SKYGIVPRVEHYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKH 483
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
G E A + K + S EP G+V ++L + Y+
Sbjct: 484 GEIELAEEAAKHL--SELEP-GSVGNSLLLSDIYA 515
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 275/540 (50%), Gaps = 77/540 (14%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLHKS 78
SH+P ++I+ T I L+ S +++ + +IHA+++ + + +TT+++ +++
Sbjct: 7 SHQPWSSISPT--IKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYX 64
Query: 79 IDYALSIFDH-----FTP-----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+++A +F F+P ++ +++N +I+ + + + + F ML V +
Sbjct: 65 VEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVD 124
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA----------------- 171
+ + V K+ + L L+ G +H + K+G+ D F++ L
Sbjct: 125 KFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFD 184
Query: 172 --------------DMYVQLGKTRGAFKVFDETPEKNKS--------------------- 196
D YV+ G T A ++FD PE+ K+
Sbjct: 185 RMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIA 244
Query: 197 ---------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ ++ WN +I+G K G + A LF +MP+++V +W ++IDG+ + G +
Sbjct: 245 SKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVH 304
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSAC 306
+A LF+QMP + VVS+ +MI G+ QN +AL +F M ++ + ++ T+V LSA
Sbjct: 305 QAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAI 364
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A++G L + +H YI F L G +G AL+DMY+KCG+I+ A LVF + K + W
Sbjct: 365 AQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWN 424
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI GLAIHG E A ++ +PD F+ +L AC +SG VK L F+ MR
Sbjct: 425 AMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRK 484
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ IEP ++H+ +V++LSR G ++ A N I +MP P+ VIW AC HK+ + ++
Sbjct: 485 HKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGEL 544
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 3 GHVFNRLT-TAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
G+V NR A+ +++ K SH + T ++S I + +H I+ F
Sbjct: 327 GYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFF 386
Query: 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
++ LI S SI +A+ +F K++ +N +I GLA + +S + +
Sbjct: 387 LGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 446
Query: 121 LRLSVRPNRLTY 132
R S++P+ +T+
Sbjct: 447 ERRSIKPDDITF 458
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 151/495 (30%), Positives = 254/495 (51%), Gaps = 14/495 (2%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI + ++ +T + +S + ++ +Q HA I++ L
Sbjct: 223 MVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGL 282
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA IFD K +N+LI G + + I
Sbjct: 283 XLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQL 342
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M R +++ + +T + + S L LG+ + C ++ G+E D + DMY + G
Sbjct: 343 MRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGS 402
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS 235
A KVFD T +K+ ++LWN L++ + G +A+ LF M NV +W
Sbjct: 403 IVNAKKVFDSTVQKD----LILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNL 458
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G+ +SWT M+NG QNG +E+A+ +M ++G
Sbjct: 459 IILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESG 518
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAA 350
+R N FT+ ALSACA + +L G +H YI N + I T+LVDMYAKCG+I A
Sbjct: 519 LRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKA 578
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VFG +L + AMI A++G+ +AI ++ + G +PD ++L+AC Y
Sbjct: 579 ERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYG 638
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
V A+ F M + ++P ++H+ ++V+LL+ G+ DKAL + +MP PD + +
Sbjct: 639 RDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQS 698
Query: 471 LFCACRTHKDTKIAK 485
LF +C T++ +
Sbjct: 699 LFESCSKQHKTELVE 713
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 205/458 (44%), Gaps = 50/458 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHAQI+ F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 67 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 126
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H + K+G+ + F
Sbjct: 127 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 186
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFD P++N + WN L+ G + G +A+ L M
Sbjct: 187 VASSLADMYGKCGVLDDARKVFDYIPDRN----AVAWNALMVGYVQNGMNEEAIRLLSEM 242
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K+ + S+++ + G +
Sbjct: 243 RKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLI 302
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F+ M EK V+W +I+G+ Q G E+A+ M M ++ + T+ + +SA
Sbjct: 303 EYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAA 362
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
L+ G + Y C GL+ I + VDMYAKCG+I A VF T +KDL+
Sbjct: 363 TSTQNLKLGKEIQCY--CIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLIL 420
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W ++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 421 WNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQ 480
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 481 -SSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES 517
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 14/311 (4%)
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
P K+ L W+ G GY+ KA G+ VAS SL D + + G L A
Sbjct: 153 VPNVCKACGALQWSRFGRGVH--GYVAKA----GLHHCVFVAS--SLADMYGKCGVLDDA 204
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
++F+ +P++ V+W A++ G+ QNG E+A+ + +M G+ TV + LSA A +
Sbjct: 205 RKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 264
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G +E G + H N L +GT++++ Y G IE A ++F EK +TW +I
Sbjct: 265 GGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLI 324
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G G E+AI + M + D +++A + +KL + +
Sbjct: 325 SGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKE-IQCYCIRHGL 383
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
E + + V++ ++ G + A + + D ++W L A + D+ ++ AL+
Sbjct: 384 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQ-KDLILWNTLLSA---YADSGLSGEALR 439
Query: 490 SSCSLNL-SIP 499
+ L S+P
Sbjct: 440 LFYEMQLESVP 450
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/426 (19%), Positives = 167/426 (39%), Gaps = 100/426 (23%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD+ +N +N L+ G +N + I M + + P R+T +
Sbjct: 201 LDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSA 260
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A++ + G+ H + +G+ D + + + Y +G A +FD EK
Sbjct: 261 SANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEK----X 316
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-SWVSL--------------------- 236
+ WN+LI+G + G + +A+ + +M ++N+ V+L
Sbjct: 317 XVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 376
Query: 237 -----------------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+D + + G + A ++F+ +K ++ W +++ ++ +G + +
Sbjct: 377 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 436
Query: 280 ALAMFFQMLDAGVRANDFT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
AL +F++M V N T ++S L
Sbjct: 437 ALRLFYEMQLESVPPNVITWNLIILSLL-------------------------------- 464
Query: 336 ALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ G + A +F + + +L++WT M+ GL +G E+AI + +KM S
Sbjct: 465 -------RNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES 517
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-----SVKHHTVVVNLLSRV 446
G P+ L+AC LA F Y I S T +V++ ++
Sbjct: 518 GLRPNAFTITVALSAC-----ANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKC 572
Query: 447 GQVDKA 452
G ++KA
Sbjct: 573 GDINKA 578
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 18/306 (5%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVA 231
G+ R A + E +N ++ ++ GC L ++ + KK N
Sbjct: 26 GEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEY 85
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
L+ + + L+ A LF ++ + V SW A+I + G E AL F +ML+ G
Sbjct: 86 IETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENG 145
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ ++F V + AC + G VH Y++ + ++L DMY KCG ++ A
Sbjct: 146 IFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDAR 205
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF +++ + W A++ G +G E+AI+ +M G EP L+A G
Sbjct: 206 KVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMG 265
Query: 412 QVKL-----ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
++ A + + D + T ++N VG ++ A + M E V
Sbjct: 266 GIEEGKQSHAXXIVNGLXLDNIL------GTSILNFYCXVGLIEYAEMIFDGMIEKX-XV 318
Query: 467 IWGALF 472
W L
Sbjct: 319 TWNLLI 324
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 14/217 (6%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ ++ +NGE +AL++ +M +R L C L G ++H I
Sbjct: 14 SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 73
Query: 323 -SCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
DF + I T LV YAKC +E A ++F + + +++ +W A+I G E
Sbjct: 74 LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 133
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ F +M+ +G PD V + AC L + F Y + + HH V V
Sbjct: 134 ALMGFVEMLENGIFPDNFVVPNVCKACG-----ALQWSRFGRGVHGYVAKAGL-HHCVFV 187
Query: 441 -----NLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ + G +D A + +P+ + V W AL
Sbjct: 188 ASSLADMYGKCGVLDDARKVFDYIPDR-NAVAWNALM 223
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 245/471 (52%), Gaps = 39/471 (8%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+ P ++ + + N K Q+HA ++L L ++ + +++++ + ID
Sbjct: 63 SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDID 122
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
++S+F+ + +FN +IR A + ++ + M + T+PFV KS
Sbjct: 123 SSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSV 182
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L + +G+ +H LI++ G+++D +V L +Y + G+ A KVFD
Sbjct: 183 ELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN----------- 231
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
M ++V+SW +L+ G+ + G + A +FE+MP +
Sbjct: 232 ------------------------MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 267
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRV 318
+VSWT MI+G+SQ+G A++AL++F +M+ D+GVR N T++S L ACA++ LE G ++
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE--TKEKDLLTWTAMIWGLAIHG 376
H ++ AL MYAKCG++ A F + EK+L+ W MI A +G
Sbjct: 328 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 387
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
QA+ F++M+ +G +PD F +L+ C +SG V + L +F+ M Y I P V+H+
Sbjct: 388 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 447
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V +LL R G++ +A + +MP IWG+L ACR H++ ++A+ A
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETA 498
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 243/464 (52%), Gaps = 40/464 (8%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSI 85
NI + I+LI S + K+L+QIH Q++++ L + + Q ++S ++ + Y+ I
Sbjct: 6 NIAKHPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQI 65
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLS 143
D L N +IR +++ + +L+ + + P+ T+ F+ ++ A S
Sbjct: 66 LDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-S 124
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
G +H ++K G EYD V L MY ++ +VF+ + + ++
Sbjct: 125 ACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPD----LVCQT 180
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+++ C+K G + GF R LF+ MP++ VS
Sbjct: 181 TMVSACAKCGDI-----------------------GFARN--------LFDSMPQRDFVS 209
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W AMI G++Q G++ +AL +F M GV+ N+ +++S ++AC +GAL+ G H YI
Sbjct: 210 WNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIE 269
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N + +GTALVDMY KCGN++ A VF E EK++ TW+ I GLA++G ++ ++
Sbjct: 270 KNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLE 329
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M + G P+ F+++L C G V + FDSM+ D+ IEP ++H+ +V+L
Sbjct: 330 LFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLY 389
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G++++ALNFIN MP P WGAL ACR +K+ ++ + A
Sbjct: 390 GRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFA 433
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 18/244 (7%)
Query: 29 ITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+ E +IS++ + L Q HA I + + + + T L+ ++D AL +
Sbjct: 240 VNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKV 299
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F KN++ ++ I GLA N + Q C+ F FM + PN +T+ V K + + +
Sbjct: 300 FWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFV 359
Query: 146 SLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
GR + G+E + D+Y + G+ A + P K + + W
Sbjct: 360 DEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGA---WGA 416
Query: 205 LINGCS-----KIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
L+N C ++G RK +E+ G KN ++VSL + + G+ + + + M
Sbjct: 417 LLNACRMYKNMELGEFASRKLIEVEG----KNHGAYVSLSNIYADTGNWDRVSNVRQSMK 472
Query: 258 EKGV 261
+G+
Sbjct: 473 AEGI 476
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 196/320 (61%), Gaps = 9/320 (2%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A ++FD P+ + V+LWNV+++G ++G + A ELF MP +V SW +++ G+
Sbjct: 44 ARRLFDLAPQCD----VVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYAN 99
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVS 301
G+++ ++FE+MP + V SW +I G+ +NG ++AL F +ML D V ND+TVV+
Sbjct: 100 NGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVA 159
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKE 359
LSAC+++G LE G VH Y + G KG +G AL+DMYAKCG IE A VF
Sbjct: 160 VLSACSRLGDLEIGKWVHVY--ADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDV 217
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
KD++TW +I LA+H A+ F+ M +G PDG F+ IL+AC + G V+
Sbjct: 218 KDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLH 277
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM DY I P ++H+ +V+LL R G +++A++ + KMP PD VIW AL ACR +K
Sbjct: 278 FQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYK 337
Query: 480 DTKIAKIALQSSCSLNLSIP 499
+ ++A++ALQ L + P
Sbjct: 338 NVEMAELALQRLIELEPNNP 357
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 121/269 (44%), Gaps = 48/269 (17%)
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
++ A ++F M KNV +W +++ + D+ A LF+ P+ VV W +++G+ +
Sbjct: 9 FVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIE 68
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G+ A +F +M D V + + TV+S
Sbjct: 69 LGDMVAARELFDRMPDCDVMSWN-TVLSG------------------------------- 96
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG- 392
YA G +E VF E +++ +W +I G +G +++A++ FK+M+ G
Sbjct: 97 -------YANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGV 149
Query: 393 TEPDGTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
P+ +A+L+AC G +++ + DS+ + + ++ ++++ ++ G +
Sbjct: 150 VVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGY----KGNLFVGNALIDMYAKCGVI 205
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTH 478
+KAL+ + + + D + W + + H
Sbjct: 206 EKALDVFDGL-DVKDIITWNTIINSLAMH 233
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 50/256 (19%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-P 127
++S + + ++ + +F+ +N++ +N LI G N F+ + F ML V P
Sbjct: 93 VLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVP 152
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N T V + + L L +G+ +H G + + FV L DMY + G A VF
Sbjct: 153 NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVF 212
Query: 188 DETPEKNKSESVLLWNVLIN-----------------------------------GCSKI 212
D K+ ++ WN +IN C+ +
Sbjct: 213 DGLDVKD----IITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHM 268
Query: 213 GYLRKA-------VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSW 264
G +R V+ + ++P+ + + ++D R G + +A ++ +MP E VV W
Sbjct: 269 GLVRNGFLHFQSMVDDYLIVPQ--IEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIW 326
Query: 265 TAMINGFSQNGEAEKA 280
A++ E A
Sbjct: 327 AALLGACRXYKNVEMA 342
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 240/436 (55%), Gaps = 40/436 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N I + +I+++ NS +L++IHA +I L ++++S ++L S + S +
Sbjct: 10 NAILNSCLINILDKCNSMLELKKIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCW 69
Query: 87 DHFTPKNLHIFN--VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
F+ N IFN +IRG +++ + IS F+ ML++ V P+ LTYPF+ K+ A L
Sbjct: 70 VLFSLLNPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLK 129
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LG +H I+K G E D F+ L MY G A VFD
Sbjct: 130 RELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYVFDG--------------- 174
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
MP KN+ SW S++DG + G++ A +LF+ MP++ V+SW
Sbjct: 175 --------------------MPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSW 214
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+++I+G+ +NG+ A+ +F +M +G + N+ T+VS L ACA +GAL+ G +H+Y+
Sbjct: 215 SSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVID 274
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKE-KDLLTWTAMIWGLAIHGRYEQAI 382
N L + T+LVDMYAKCG I A VF G E D+L W AMI GLA HG ++++
Sbjct: 275 NKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESL 334
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
FK+M + G +PD +L++L AC + G VK A FFD + + + ++H+ +V++
Sbjct: 335 DLFKEMNFVGVKPDEITYLSLLHACAHGGLVKEAWYFFDCLG-KHGMTLKIEHYACIVDV 393
Query: 443 LSRVGQVDKALNFINK 458
++R GQ+ KA F+++
Sbjct: 394 MARAGQIAKAYQFLSR 409
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 144/455 (31%), Positives = 239/455 (52%), Gaps = 37/455 (8%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF-DHFTP 91
H +S + + +L+QIHA+++ L T+ +S YA +F + F
Sbjct: 13 HNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDR 72
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ ++N++IRGL+ + + + ML S N T+PF+ K+ ++LS +
Sbjct: 73 PDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQI 132
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H I K G +D + N LIN +
Sbjct: 133 HAHITKFGYGHDIYAV-----------------------------------NSLINSYAV 157
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-VVSWTAMING 270
G + A LF + + + SW S+I G+++ G++ A LF +MPEK +SWT MI+G
Sbjct: 158 TGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISG 217
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ Q G ++AL +F +M ++ V ++ ++ SALSAC+++GALE G +H+Y + +
Sbjct: 218 YVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRID 277
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ L+DMYAKCG +E A VF K K + WTA+I G A HG +AI F +M
Sbjct: 278 SVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQN 337
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G +P+ F A+LTAC Y+G V+ + F+++ DY ++P+++H+ +V+LL R G ++
Sbjct: 338 MGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLN 397
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A FI KMP P+ VIWG+L AC+ HK+ ++ +
Sbjct: 398 EANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGE 432
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 40/265 (15%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIIL----HNLFA-SSRITTQLISSASLHK-- 77
P N T ++ + ++ ++ QIHA I H+++A +S I + ++ H
Sbjct: 107 PHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHL 166
Query: 78 ------------------------SIDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQS 112
+D AL++F KN I + +I G + +
Sbjct: 167 LFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKE 226
Query: 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172
+ F M +V P+ ++ + + L L G+ +H K+ D+ + L D
Sbjct: 227 ALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLID 286
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKK 228
MY + G+ A VF K++SV +W LI+G + G R+A+ E+ M K
Sbjct: 287 MYAKCGEMEEALGVFKNM----KTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKP 342
Query: 229 NVASWVSLIDGFMRKGDLKKAGELF 253
N ++ +++ G +++ +F
Sbjct: 343 NAITFTAVLTACSYTGLVEEGKSVF 367
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 226/411 (54%), Gaps = 18/411 (4%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF---VS 136
D + +F KN+ +N +I G E+ +F M P R T + +S
Sbjct: 23 DESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM------PQRNTASWNAMIS 76
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
V + R + ++ + Y A V D Y ++G+ A +F+ P+KN
Sbjct: 77 GLVRYDRVEEASRLFEEMPRRNVISYTAMV-----DGYAKIGEIEQARALFNCMPQKN-- 129
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
V+ W V+I+G + G +A LF MP KN+ + ++I G+ ++G KA LF+Q+
Sbjct: 130 --VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 187
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + + SW AMI G++QNG E+AL + QML G++ + T++S L+AC+ + +L+ G
Sbjct: 188 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGR 247
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ H + + + + +I AL+ MY KCG+I + L F + D+++W AMI A HG
Sbjct: 248 KTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 307
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
Y++A+ F +M + EPDG FL++L+AC ++G+V +LN+F+SM Y I P +H
Sbjct: 308 FYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHF 367
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V++LSR GQV+KA I +MP D IWGAL AC H + K+ ++A
Sbjct: 368 ACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELA 418
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 47/311 (15%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +I G K G ++ LFG+MP KNV SW S+I G + + +A + F+ MP++
Sbjct: 9 WNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT 68
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG------ 315
SW AMI+G + E+A +F +M R N + + + AK+G +E
Sbjct: 69 ASWNAMISGLVRYDRVEEASRLFEEM----PRRNVISYTAMVDGYAKIGEIEQARALFNC 124
Query: 316 ----------VRVHNYISCNDFGL----------KGAIG-TALVDMYAKCGNIEAASLVF 354
V + Y+ F K + TA++ Y K G + A ++F
Sbjct: 125 MPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILF 184
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+ +DL +W AMI G A +G E+A++ +M+ G +PD + +++LTAC
Sbjct: 185 DQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS------ 238
Query: 415 LALNFFDSMRFDYFI------EPSVKHHTVVVNLLSRVGQV-DKALNFINKMPETPDFVI 467
+L R + + E + ++ + + G + D L F + + PD V
Sbjct: 239 -SLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAF--RQIDHPDVVS 295
Query: 468 WGALFCACRTH 478
W A+ A H
Sbjct: 296 WNAMIAAFARH 306
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP ++ SW S+I G+ + G ++ LF MP K VVSW +MI G ++ ++A
Sbjct: 1 MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEA---- 56
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAK 343
+Q A + N + + +S + +E R+ + + I TA+VD YAK
Sbjct: 57 WQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLF-----EEMPRRNVISYTAMVDGYAK 111
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FL 401
G IE A +F +K++++WT MI G +G++++A F++M PD +
Sbjct: 112 IGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVAMT 165
Query: 402 AILTACWYSGQVKLALNFFDSM 423
A++T G+ A FD +
Sbjct: 166 AMITGYCKEGKTDKAKILFDQI 187
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 34/304 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ D A +FD ++L +N +I G A+N + + ML++ ++
Sbjct: 165 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 224
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG---KTRGA 183
P+ T V + +SL+ L GR H L++KSG E + L MY + G + A
Sbjct: 225 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 284
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG 239
F+ D V+ WN +I ++ G+ +A+ FG M V +++SL+
Sbjct: 285 FRQIDHP-------DVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 337
Query: 240 FMRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + ++ F M E + + +++ S+ G+ EKA + +M
Sbjct: 338 CGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM------- 390
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD--MYAKCGNIEAASL 352
F + C GAL A VH + + K + + Y NI AA+
Sbjct: 391 -PFE-----ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 444
Query: 353 VFGE 356
++GE
Sbjct: 445 MWGE 448
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 131/339 (38%), Gaps = 84/339 (24%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I+ A ++F+ KN+ + V+I G EN F + F M P+ K
Sbjct: 114 EIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PD--------K 159
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ +++ + G Y + GKT A +FD+ P ++
Sbjct: 160 NIVAMTAMITG-------------------------YCKEGKTDKAKILFDQIPCRD--- 191
Query: 198 SVLLWNVLINGCSKIGYLRKAVEL------FGMMPKKNV--------ASWVSLIDG---- 239
+ WN +I G ++ G +A++L GM P + +S SL +G
Sbjct: 192 -LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 250
Query: 240 ---------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
+ + G + + F Q+ VVSW AMI F+++G +
Sbjct: 251 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 310
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTAL 337
+ALA F +M V + T +S LSAC G + + N I + L
Sbjct: 311 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACL 370
Query: 338 VDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIH 375
VD+ ++ G +E A + E E D W A++ +H
Sbjct: 371 VDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVH 409
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 228/455 (50%), Gaps = 41/455 (9%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
++Q+HA H L T L+ L ++ YA +FDH ++N LI+
Sbjct: 4 IKQLHA----HCLRTGVDETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYV 59
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ I + + +RP+ T+ F+ + AS S R LH +SG E D+F
Sbjct: 60 HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
LI +K+G L A +F M
Sbjct: 120 -----------------------------------CTTLITAYAKLGALCCARRVFDEMS 144
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
K++V W ++I G+ R+GD+K A ELF+ MP K V SWT +I+GFSQNG +AL MF
Sbjct: 145 KRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLC 204
Query: 287 M-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M D V+ N TVVS L ACA +G LE G R+ Y N F + A ++MY+KCG
Sbjct: 205 MEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCG 264
Query: 346 NIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
I+ A +F E +++L +W +MI LA HG++++A+ F +M+ G +PD F+ +L
Sbjct: 265 MIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLL 324
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
AC + G V F SM + I P ++H+ +++LL RVG++ +A + I MP PD
Sbjct: 325 LACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPD 384
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
V+WG L AC H + +IA+IA ++ L + P
Sbjct: 385 AVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNP 419
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 47/310 (15%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---- 100
+ LR +H+Q + S T LI++ + ++ A +FD + +++ ++N +
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 101 ---------------------------IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTY 132
I G ++N ++ + F+ M + SV+PN +T
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 218
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V + A+L L +GR L ++G + +V +MY + G A ++F+E
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL-- 276
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
++ WN +I + G +A+ LF M K + ++V L+ + G + K
Sbjct: 277 -GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 249 AGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
ELF+ M E +S + MI+ + G+ ++A + M ++ + + L
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM---PMKPDAVVWGTLL 392
Query: 304 SACAKVGALE 313
AC+ G +E
Sbjct: 393 GACSFHGNVE 402
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 236/471 (50%), Gaps = 41/471 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
T + S+ + + + L+ IHA+ NL + + ++ ++ S + + YA +F
Sbjct: 240 TSQSLASMAEACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFS 299
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLS 143
N +N LIRG +++S + F M R V P+ T+ F+ S+ L
Sbjct: 300 QIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLP 359
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L+ +H ++K G + FV L +Y G A +VF+E
Sbjct: 360 LIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNE-------------- 405
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
M +V SW L+ +R G+L+ A ++F++MPE+ VVS
Sbjct: 406 ---------------------MVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVS 444
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT M++G++Q + +AL +F +M D GVR ++ +V +SAC +G LE G VH YI
Sbjct: 445 WTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYID 504
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N FG ++ AL+DMYAKCG ++ A VF + K L+TW +MI A HG E A +
Sbjct: 505 ENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFR 564
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M+ SG PDG FLA+LTA + G V F+SM+ DY +E V+H+ +V++L
Sbjct: 565 VFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDML 624
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
R G++++A I M + V+WGAL ACR + D ++ + L+ L
Sbjct: 625 GRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIEL 675
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 251/510 (49%), Gaps = 49/510 (9%)
Query: 23 HKPSNNITET----HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK- 77
H PS+++ E I + I S L+Q+ + +I+ L S + +L+ +L
Sbjct: 12 HAPSSHMAEELVNQFISAAISKSRHLNHLKQVQSFLIVSGLSHSHFLCFKLLRFCTLRLC 71
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENS--HFQSCISHFVFMLRLSV-RPNRLTYPF 134
++ YA IFD F+ N H++ ++ G + + H S S F M+ S RPN YP
Sbjct: 72 NLSYARFIFDRFSFPNTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPL 131
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V KS LS +H + KSG V+ L Y
Sbjct: 132 VLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYA------------------- 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
S + ++ A +LF M ++NV SW +++ G+ R GD+ A LFE
Sbjct: 173 ---------------SSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFE 217
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
+MPE+ V SW A++ +QNG +A+++F +M+ D +R N+ T+V LSACA+ G L+
Sbjct: 218 EMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQ 277
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H + + + +LVD+Y KCGN+E AS VF + +K L W +MI A
Sbjct: 278 LAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINCFA 337
Query: 374 IHGRYEQAIQYFKKMMYSGT---EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+HGR E+AI F+ MM + +PD F+ +L AC + G V +FD M+ + IE
Sbjct: 338 LHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIE 397
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +++LL R GQ D+AL ++ M D IWG+L AC+ + +A++A+++
Sbjct: 398 PRIEHYGCLIDLLGRAGQFDEALETMSTMKMEADEAIWGSLLNACKKYGHLDLAEVAVKN 457
Query: 491 SCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+LN P Y G+ W E
Sbjct: 458 LVALN---PNNGGYVAMMANLYGEMGNWEE 484
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 23/298 (7%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSV 125
T ++S + I A+++F+ +++ +N ++ +N F +S F M+ +
Sbjct: 197 TAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCI 256
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN +T V + A L L +G+H + + D FV L D+Y + G A
Sbjct: 257 RPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASS 316
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVSLID 238
VF + +K S+ WN +IN + G +A+ +F M K N +++ L++
Sbjct: 317 VFKMSSKK----SLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLN 372
Query: 239 GFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
G + K F+ M E + + +I+ + G+ ++AL M +
Sbjct: 373 ACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDEALETMSTM---KME 429
Query: 294 ANDFTVVSALSACAKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
A++ S L+AC K G L+ A V V N ++ N G + ++Y + GN E A
Sbjct: 430 ADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPN--NGGYVAMMANLYGEMGNWEEA 485
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 252/512 (49%), Gaps = 46/512 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS---RITTQLISSASLHKSIDY 81
P + ++S + + S Q HA ++ A+S L++ AS+ +
Sbjct: 4 PCPAVALPTLLSRLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPL 63
Query: 82 ALSIFDHF---TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
A ++F ++ +N IR L ++ + +F M VRP+ T+P V K+
Sbjct: 64 ADAVFARLPEPAARDPFPWNTAIR-LHAPGRPRAALLYFARMRSCGVRPDAYTFPAVLKA 122
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL--------------------- 177
G +H V+ G+ D F L Y ++
Sbjct: 123 CGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLV 182
Query: 178 ------------GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY--LRKAVELFG 223
G+ A ++FDE P+++ W LI+G K G + +A ELF
Sbjct: 183 SWNSMVAGYVGCGEMGLAQELFDEMPQRD----AFSWGALIDGYGKQGGAGVDRARELFD 238
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
M ++++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G + GEA++AL
Sbjct: 239 QMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEH 298
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F ML G+R + V A+SACA++GALE G +H+Y+ + TAL+DMY K
Sbjct: 299 FQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMK 358
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG ++ A L+F E+ ++TW MI GL HG A+ F +M D LA+
Sbjct: 359 CGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAM 418
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
LTAC ++G V L F M+ D+ I+P V+H+ +V+LL R G++D+A + I MP P
Sbjct: 419 LTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEP 478
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+WG+L ACR+H ++A+++++ +L
Sbjct: 479 TPELWGSLLAACRSHSCVELAELSVERLANLG 510
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 248/511 (48%), Gaps = 75/511 (14%)
Query: 58 NLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
NL LI S +L S I A ++F L +N++IRG + + I
Sbjct: 5 NLRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRM 64
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
+ M R + N LTY F+ K+ A + +S G +H ++K G E +V L +MY
Sbjct: 65 YNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGS 124
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLING---------------------------- 208
G A KVFDE PE++ ++ WN L+ G
Sbjct: 125 CGHLGLAQKVFDEMPERD----LVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVT 180
Query: 209 -------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQ-- 255
C+ +G A + + + NV V +LID + R+G + A +F+Q
Sbjct: 181 MVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQ 240
Query: 256 -----------------------------MPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
M ++ V+SWT MI +SQ G+ +AL +F +
Sbjct: 241 WRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKE 300
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+++ V+ ++ TV S LSACA G+L+ G H+YI D +G AL+DMY KCG
Sbjct: 301 MMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGV 360
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+E A VF E ++KD ++WT++I GLA++G + A+ YF +M+ +P F+ IL A
Sbjct: 361 VEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLA 420
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C ++G V L +F+SM Y ++P +KH+ VV+LLSR G + +A FI +MP TPD V
Sbjct: 421 CAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVV 480
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
IW L A + H + +A+IA + L+ S
Sbjct: 481 IWRILLSASQVHGNIPLAEIATKKLLELDPS 511
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
++S KP + IT ++S + S H I +++ A + LI
Sbjct: 302 MESKVKP-DEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGV 360
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ AL +F K+ + +I GLA N S + +F MLR V+P+ + + +
Sbjct: 361 VEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLA 420
Query: 139 VASLSLLSLGRGLHCLIVKSGVEY-DAFVRVH-----------LADMYVQLGKTRGAFKV 186
A H +V G+EY ++ +V+ + D+ + G + AF+
Sbjct: 421 CA-----------HAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEF 469
Query: 187 FDETPEKNKSESVLLWNVLIN 207
E P + V++W +L++
Sbjct: 470 IKEMP---VTPDVVIWRILLS 487
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 245/484 (50%), Gaps = 51/484 (10%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQI----ILHNLFASSRITTQL-ISS 72
+IK +P N + + +LI + K+++ IH I ILH T L S
Sbjct: 6 DIKVFGEPKNLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCS 65
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIR--GLAENSHFQSCISHFVF----MLRLSVR 126
S + S +YA ++F L ++N++IR G E +C + ML +
Sbjct: 66 FSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIV 125
Query: 127 PNRLTYPFVSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
PN LT+PF+ K + L ++G +H ++K G D FV L +++ G ++ A K
Sbjct: 126 PNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARK 185
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
VFDE M ++V SW S++ G++R G+
Sbjct: 186 VFDE-----------------------------------MFVRDVVSWNSMVVGYLRNGE 210
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML----DAGVRANDFTVVS 301
++ A LF +M + +++W ++I G Q G A+++L +F +M D V+ + T+ S
Sbjct: 211 VEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIAS 270
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
LSACA +G+++ G VH Y+ ND IGTALV+MY KCG+++ A +F + EKD
Sbjct: 271 VLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKD 330
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
WTAMI A+HG ++A F +M +G +P+ F+ +L+AC +SG V+ FD
Sbjct: 331 ASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFD 390
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
M+ Y IEP + H+ +V++LSR D+AL I MP PD +WGAL C+ H +
Sbjct: 391 VMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNI 450
Query: 482 KIAK 485
K+ +
Sbjct: 451 KLGE 454
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 159/345 (46%), Gaps = 27/345 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ISL + +K R++ ++ + ++ + + + + + ++ AL++F +N
Sbjct: 170 LISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGE----VEMALNLFRKMNGRN 225
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLS----VRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +I GL + H + + F M LS V+P+++T V + A L + G+
Sbjct: 226 IITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGK 285
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + K+ +E D + L +MY + G + A ++F++ PEK+ S W +I+
Sbjct: 286 WVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASA----WTAMISVF 341
Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKG 260
+ G+ +KA + F M K V ++V L+ G +++ F+ M E
Sbjct: 342 ALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQ 401
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+ + M++ S+ ++AL + M ++ + + + L C G ++ G +V +
Sbjct: 402 IYHYACMVDILSRARLFDEALFLIRSM---PMKPDVYVWGALLGGCQMHGNIKLGEKVAH 458
Query: 321 YISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
Y+ D A L D+Y K G +AA + KE+ + T
Sbjct: 459 YLI--DLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIET 501
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 14/245 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + IT ++S S + +HA + +++ I T L++ + A+
Sbjct: 262 KP-DKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAI 320
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF+ K+ + +I A + + F+ M + V+PN +T+ + + +
Sbjct: 321 EIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSG 380
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS----ESV 199
L+ GR C V V H A M L + R +FDE +S V
Sbjct: 381 LVEQGRC--CFDVMKRVYSIEPQIYHYACMVDILSRAR----LFDEALFLIRSMPMKPDV 434
Query: 200 LLWNVLINGCSKIGYLR---KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W L+ GC G ++ K + N A +++L D +++ G A + M
Sbjct: 435 YVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSM 494
Query: 257 PEKGV 261
E+G+
Sbjct: 495 KERGI 499
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 249/504 (49%), Gaps = 49/504 (9%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYAL 83
P+ + ++++ + L+Q+H + ++ AS T QL+ ASL S + YA
Sbjct: 3 PAPPFSHGDFVAVLSRCATLAHLKQLHGRSVVTARAASQSTTFQLLRFASLRLSCLPYAR 62
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHF----QSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
+FD N+ +++ ++ A S ++ F+ MLR PN+ YP V ++
Sbjct: 63 RLFDSTPHPNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRA 122
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
++ + L R +H KSG +R L D Y + G A K+FD E+N
Sbjct: 123 ACAIGV-QLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERN---- 177
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V+ W L++G ++ G + A+ LF MP+++VA+W
Sbjct: 178 VISWTALVSGYARAGKIGDAIVLFDRMPERDVAAW------------------------- 212
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
AMI G +QNG +A+ + +M+D G + N TV LSAC +G L+ G V
Sbjct: 213 ------NAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVV 266
Query: 319 HNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
H Y SC FG ++ L+DMY KCGN++ A +F E ++ L TW ++I LA+HG
Sbjct: 267 HGYAWRSCVGFG--SSVVNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLALHG 324
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ AI F +M G EPD F+ +L AC + G V L +F M + IEP ++H+
Sbjct: 325 HSKSAIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHY 384
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
+V+LL R G+ + A+N IN M PD VIWG+L ACRTH+ ++A+ +++ LN
Sbjct: 385 GCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQLN- 443
Query: 497 SIPQAMSYCQTFMQQKGDGRTWRE 520
P +Y +G +W E
Sbjct: 444 --PNNANYVVMLANLYSEGGSWEE 465
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 226/421 (53%), Gaps = 38/421 (9%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKN 93
SL+ +S + K+ +Q+HA + N F+ I++ L+S + K +++Y LSIF+
Sbjct: 13 SLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPA 72
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L ++N+LI+ +N I+ F +L P+ T P V K A L G+ +H
Sbjct: 73 LVLYNILIKCYIQNQLSHDAITLFSQLLH-EFNPDGFTLPCVIKGCARLHATKEGKQIHG 131
Query: 154 LIVKSGVEYDAFVRVHLADMY-------------------------------VQLGKTRG 182
L++K G + FV L +MY V+ G+
Sbjct: 132 LVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVEL 191
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
K+F+E PE++ + W VLI+G SK G + A ELF MP +N+ SW ++I+G+M+
Sbjct: 192 GMKLFEEMPERD----LFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMK 247
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
GD A ELF++MPEK ++SW +M+ G+ N ++AL +F ML+ N T+VS
Sbjct: 248 AGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVST 307
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
SA + + +L G +H+Y+ N F L G + T+L++MY+KCGNIE+A VF +K L
Sbjct: 308 FSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKKKL 367
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
WTA+I GL +HG + A+++F +M +G P F+ +L AC ++G V+ +FD
Sbjct: 368 GHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRKYFDM 427
Query: 423 M 423
M
Sbjct: 428 M 428
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 42/227 (18%)
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L+ +F ++ E +V + +I + QN + A+ +F Q+L + FT+ +
Sbjct: 57 NLEYVLSIFNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQLLHE-FNPDGFTLPCVIK 115
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
CA++ A + G ++H + FGL + ++LV+MY+KC +I++A VF +KDL++
Sbjct: 116 GCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVS 175
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W ++I G G+ E ++ F++M P+ +F W
Sbjct: 176 WNSLIDGYVKCGQVELGMKLFEEM------PERDLF------SW---------------- 207
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
TV+++ S+ G+VD A +KMP + + V W A+
Sbjct: 208 ------------TVLIDGFSKCGKVDVARELFDKMP-SRNLVSWNAM 241
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 234/468 (50%), Gaps = 44/468 (9%)
Query: 37 LIHSSNSTKQLRQIHAQI----ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
L+ S K L+Q HAQ+ + +N FA SR+ S H+S+ YA +F+
Sbjct: 11 LLEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNP 70
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+ I+N LI+ N+ F+S + FV ML+ ++P+ T P+V K+ + S G+ +H
Sbjct: 71 TVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIH 130
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
K G+ +D +V L MY G A VFDE
Sbjct: 131 GYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDE----------------------- 167
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
+P NV SW +I G+ + GD+ A F++ PEK W AMI+G+
Sbjct: 168 ------------IPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYV 215
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-CNDFGLKG 331
QN +++L +F M + ++ VS LSACA +GALE GV +H +++ L
Sbjct: 216 QNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSV 275
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ T+L+DMYAKCGN+E A +F +D++ W AMI G+A+HG + A++ F M
Sbjct: 276 RLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKV 335
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +PD F+A+ TAC YSG L D M Y I P +H+ +V+LLSR G ++
Sbjct: 336 GVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEE 395
Query: 452 ALNFINKMPE----TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
A+ I K+ + + + W A AC H +T++A++A + L+
Sbjct: 396 AMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQLD 443
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 237/460 (51%), Gaps = 43/460 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+SL+ + Q++Q+H+ +I+ + FA+ +I + + + S + I +A +F
Sbjct: 14 LSLLEQCRTMSQIKQMHSHLIVSASRLDPFAAGKIIS--LFAVSSNADISHAYKLFLSLP 71
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+ I+N +IR E + + +S + ML+ PN T+ FV ++ S +G
Sbjct: 72 HRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNS--PVGLA 129
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H ++K G E FV L +Y A K+FD ++ C
Sbjct: 130 SHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFD-----------------VSTC- 171
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++V +W +LI+G+++ G ++ A ELF+QMPE+ VSW+AMI G
Sbjct: 172 -----------------RDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITG 214
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ G +AL +F + G+R N +V AL+AC+ +G+L+ G +H Y+ N L
Sbjct: 215 YVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELD 274
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+GTALVDMYAKCG IE A VF + +KD +T++I GLA HG+ AIQ F +M
Sbjct: 275 RVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQS 334
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
P+ F+ +L+AC G V L F+ M Y IEP V+H+ +V+LL R G ++
Sbjct: 335 EKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLE 394
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+A + +MP PD + GAL +CR H D ++ K ++S
Sbjct: 395 EAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVES 434
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/495 (30%), Positives = 257/495 (51%), Gaps = 14/495 (2%)
Query: 1 MKGHVFNRL-TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI + ++ +T + +S + ++ +Q HA I++ L
Sbjct: 222 MVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGL 281
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA IFD K++ +N+LI G + + I
Sbjct: 282 ELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQL 341
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M R +++ + +T + + S L LG+ + C ++ G+E D + DMY + G
Sbjct: 342 MRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGS 401
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A KVFD T +K+ ++LWN L++ + G +A+ LF M + NV +W
Sbjct: 402 IVNAKKVFDSTVQKD----LILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNL 457
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G+ +SWT M+NG QNG +E+A+ +M ++G
Sbjct: 458 IILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESG 517
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAA 350
+R N FT+ ALSAC + +L G +H YI N + +I T+LVDMYAKCG+I A
Sbjct: 518 LRPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKA 577
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VFG +L + AMI A++G+ +AI ++ + G +PD ++L+AC Y
Sbjct: 578 ERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYG 637
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
V A+ F M + ++P ++H+ ++V+LL+ G+ DKAL + +MP PD + +
Sbjct: 638 RDVNQAIEVFRDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQS 697
Query: 471 LFCACRTHKDTKIAK 485
LF +C T++ +
Sbjct: 698 LFESCSKQHKTELVE 712
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 210/458 (45%), Gaps = 50/458 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHAQI+ F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 66 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 125
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H + K+G+ + F
Sbjct: 126 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 185
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFD P++N + WN L+ G + G +A+ L M
Sbjct: 186 VASSLADMYGKCGVLDDARKVFDYIPDRN----AVAWNALMVGYVQNGMYEEAIRLLSEM 241
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ + + +++++G + + G +
Sbjct: 242 RKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI 301
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F+ M EK VV+W +I+G+ Q G E+A+ M M ++ + T+ + +SA
Sbjct: 302 EYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAA 361
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
L+ G + Y C GL+ I + VDMYAKCG+I A VF T +KDL+
Sbjct: 362 TSTQNLKLGKEIQCY--CIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLIL 419
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W ++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 420 WNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQ 479
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 480 -SSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES 516
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 14/311 (4%)
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
P K+ L W+ G GY+ KA G+ VAS SL D + + G L A
Sbjct: 152 VPNVCKACGALQWSRFGRGVH--GYVAKA----GLHHCVFVAS--SLADMYGKCGVLDDA 203
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
++F+ +P++ V+W A++ G+ QNG E+A+ + +M G+ TV + LSA A +
Sbjct: 204 RKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 263
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G +E G + H N L +GT++++ Y K G IE A ++F EKD++TW +I
Sbjct: 264 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 323
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G G E+AI + M + D +++A + +KL + +
Sbjct: 324 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKE-IQCYCIRHGL 382
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
E + + V++ ++ G + A + + D ++W L A + D+ ++ AL+
Sbjct: 383 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQ-KDLILWNTLLSA---YADSGLSGEALR 438
Query: 490 SSCSLNL-SIP 499
+ L S+P
Sbjct: 439 LFYEMQLESVP 449
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/426 (20%), Positives = 174/426 (40%), Gaps = 100/426 (23%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD+ +N +N L+ G +N ++ I M + + P R+T +
Sbjct: 200 LDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSA 259
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A++ + G+ H + + +G+E D + + + Y ++G A +FD EK+
Sbjct: 260 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKD---- 315
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-SWVSL--------------------- 236
V+ WN+LI+G + G + +A+ + +M ++N+ V+L
Sbjct: 316 VVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 375
Query: 237 -----------------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+D + + G + A ++F+ +K ++ W +++ ++ +G + +
Sbjct: 376 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 435
Query: 280 ALAMFFQMLDAGVRANDFT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
AL +F++M V N T ++S L
Sbjct: 436 ALRLFYEMQLESVPPNVITWNLIILSLL-------------------------------- 463
Query: 336 ALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ G + A +F + + +L++WT M+ GL +G E+AI + +KM S
Sbjct: 464 -------RNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES 516
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-----SVKHHTVVVNLLSRV 446
G P+ L+AC V LA F Y I S T +V++ ++
Sbjct: 517 GLRPNAFTITVALSAC-----VNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKC 571
Query: 447 GQVDKA 452
G ++KA
Sbjct: 572 GDINKA 577
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 18/306 (5%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVA 231
G+ R A + E +N ++ ++ GC L ++ + KK N
Sbjct: 25 GEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEY 84
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
L+ + + L+ A LF ++ + V SW A+I + G E AL F +ML+ G
Sbjct: 85 IETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENG 144
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ ++F V + AC + G VH Y++ + ++L DMY KCG ++ A
Sbjct: 145 IFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDAR 204
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF +++ + W A++ G +G YE+AI+ +M G EP L+A G
Sbjct: 205 KVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMG 264
Query: 412 QVKL-----ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
++ A+ + + D + T ++N +VG ++ A + M E D V
Sbjct: 265 GIEEGKQSHAIAIVNGLELDNIL------GTSILNFYCKVGLIEYAEMIFDGMIE-KDVV 317
Query: 467 IWGALF 472
W L
Sbjct: 318 TWNLLI 323
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 14/217 (6%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ ++ +NGE +AL++ +M +R L C L G ++H I
Sbjct: 13 SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 72
Query: 323 -SCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
DF + I T LV YAKC +E A ++F + + +++ +W A+I G E
Sbjct: 73 LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 132
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ F +M+ +G PD V + AC L + F Y + + HH V V
Sbjct: 133 ALMGFVEMLENGIFPDNFVVPNVCKACG-----ALQWSRFGRGVHGYVAKAGL-HHCVFV 186
Query: 441 -----NLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ + G +D A + +P+ + V W AL
Sbjct: 187 ASSLADMYGKCGVLDDARKVFDYIPDR-NAVAWNALM 222
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 220/416 (52%), Gaps = 36/416 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
+ + N+ KQL+QIHA+II L + +L +S + IDYA +FD ++
Sbjct: 26 FLQNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLNDPDIFT 85
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV+IR + Q I F M+ P++ TYPFV + + ++ GR H L +
Sbjct: 86 WNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAI 145
Query: 157 KSGVEYDAFVRVHLADMYVQLG-KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
K G D +V+ ++ ++Y ++G +KVFD+
Sbjct: 146 KMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDK-------------------------- 179
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
M +NV SW ++I G + G L A E+FE++P K VVSWTAMING+ +N
Sbjct: 180 ---------MRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKND 230
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
KA +F +ML VR N+FT+VS + AC +G+L+ G R+H++ N F L +GT
Sbjct: 231 NPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGT 290
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
ALVDMY+KCG+++AA VFG + ++L TW M+ +HG + + FK+M +G P
Sbjct: 291 ALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVP 350
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
D F+ +L+AC ++L +F M Y + P ++H+T +V L +R ++++
Sbjct: 351 DAITFVGVLSACVQINDLELGQKYFSLMTEHYSLTPILEHYTCMVGLYTRANELNE 406
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/477 (32%), Positives = 254/477 (53%), Gaps = 18/477 (3%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
SS+ N E L SS T + +HA +++ S I+T+L++ + +
Sbjct: 9 SSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVS 68
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSV 139
+ FD K+++ +N +I N HF I F +L +S +RP+ T+P V K+
Sbjct: 69 LSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC 128
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+L GR +HC K G +++ FV L MY + G T A +FD+ P ++
Sbjct: 129 GTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-- 183
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSL----IDGFMRKGDLKKAGE 251
WN +I+G + G +A+++ M K N + VS+ +D + + G L A +
Sbjct: 184 --WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHK 241
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVG 310
+FE +P K V+SW +I G++QNG A +A+ ++ M + + N T VS L A A VG
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
AL+ G+++H + + L + T L+D+Y KCG + A +F + ++ +TW A+I
Sbjct: 302 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 361
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
IHG E+ ++ F +M+ G +PD F+++L+AC +SG V+ F M+ +Y I+
Sbjct: 362 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIK 420
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
PS+KH+ +V+LL R G ++ A +FI MP PD IWGAL ACR H + ++ K A
Sbjct: 421 PSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFA 477
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 218/411 (53%), Gaps = 37/411 (9%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
HKS+D A +FD +++ + L+ G A F M+ + +RPN +T
Sbjct: 191 HKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVA 250
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
++ + LL+ G LH + + GV
Sbjct: 251 AVSAIGQMGLLAFGIMLHKYVTEGGV---------------------------------- 276
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+ SV L N L++ K G +R A E+F M K+V SW S+++ + + GDL+ A +LF+
Sbjct: 277 -ARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFK 335
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
MP + VVSW+ MI +SQ + E+A+ +F +M+ AGV D T+VS LSACA++G L+
Sbjct: 336 DMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDL 395
Query: 315 GVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G ++ NYI N GL +G AL+DM+AKCG++ AS +F E E+++++W MI A
Sbjct: 396 GRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHA 455
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG+ E+AI+ F+++ PD FL +L +C +SG V +F M Y IEP V
Sbjct: 456 VHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRV 515
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+H+ +++LL +VG +++A MP D WGAL ACR H + +I
Sbjct: 516 EHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIG 566
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 147/282 (52%), Gaps = 33/282 (11%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVR 293
+L+ + L AG++F++MPE+ VVSWT +++G+++ G A++A +F +M + G+R
Sbjct: 183 ALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMR 242
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYIS--------------CNDFGLKGAIG----- 334
N T+V+A+SA ++G L G+ +H Y++ + FG G +
Sbjct: 243 PNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREV 302
Query: 335 ------------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
T++V+ YAKCG++E+A +F + +++++W+ MI + + E+A+
Sbjct: 303 FDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAV 362
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F++M+ +G +P +++L+AC G + L +++ I +V ++++
Sbjct: 363 WLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDM 422
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ G V +A ++M E + V W + A H ++ A
Sbjct: 423 FAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVHGQSEEA 463
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 18/231 (7%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV------GALEAGVRVH- 319
M+ GF + +AL +F +++ + A+ T V A+ A A G G +H
Sbjct: 107 MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHC 166
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ C G +G ALV YA +++ A VF E E+D+++WT ++ G A G +
Sbjct: 167 AALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226
Query: 380 QAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVK 434
+A + F +M + G P+ +A ++A GQ + L F M Y E SV
Sbjct: 227 EAWRLFCRMVVVGGMRPNAVTLVAAVSAI---GQ--MGLLAFGIMLHKYVTEGGVARSVN 281
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+V++ + G V A + M E D W ++ A D + A+
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGM-EVKDVYSWTSMVNAYAKCGDLESAE 331
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 246/506 (48%), Gaps = 53/506 (10%)
Query: 29 ITETHIISLIHSSNST---KQLRQIHAQII--LHNLFASSRITTQLISSASLHKSIDYAL 83
++ + SL+ S+ ST + R HAQII L N S I L++ S + A
Sbjct: 4 LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSF-IYNHLVNMYSKLDRPNSAQ 62
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+ +++ + LI G +N F S + HF M R S++PN T+P K+ SL
Sbjct: 63 LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLR 122
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------KS 196
+G+ +H L VK+G D FV DMY + G T A K+FDE PE+N S
Sbjct: 123 SPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLS 182
Query: 197 ESVLL-----------------WN-------VLINGCSKIGYLRKAVELFGMMPKKNVAS 232
SVL W +N C+ YLR +L G + + +
Sbjct: 183 NSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEA 242
Query: 233 WVSLIDGFMR-KGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
VS+ +G + G + G +F + + VSW +MI + QN E EKA +F +
Sbjct: 243 DVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRAR 302
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNY-----ISCNDFGLKGAIGTALVDMYAK 343
G+ DF V S LSACA + LE G VH + N F +G+ALVDMY K
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIF-----VGSALVDMYGK 357
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFL 401
CG+IE A F E E++L+TW AMI G A G+ + A+ F +M P+ F+
Sbjct: 358 CGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFV 417
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC +G V + + F+SMR Y IEP +H+ VV+LL R G V++A FI KMP
Sbjct: 418 CVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPI 477
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIA 487
P +WGAL A + +++ K+A
Sbjct: 478 RPTVSVWGALLGASKMFGKSELGKVA 503
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 59/504 (11%)
Query: 37 LIHSSNSTKQLRQIHAQII----LHNLFASSRI-------TTQLISSASLHKSI-DYALS 84
L+ + K L Q HAQ I + N F + + T + SAS K + YA S
Sbjct: 10 LLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATS 69
Query: 85 IFDHFTPKNLHIFNVLIR--GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+F T + FN +IR L E S S FV M R SV P+ T+PFV K+ A+
Sbjct: 70 VFRFITNPSTFCFNTIIRICTLHEPSSLSS-KRFFVEMRRRSVPPDFHTFPFVFKACAAK 128
Query: 143 S--LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L+L + LHC ++ G+ D F
Sbjct: 129 KNGDLTLVKTLHCQALRFGLLSDLFT---------------------------------- 154
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
N LI S I + A++LF P+++V ++ LIDG ++ ++ +A ELF+ MP +
Sbjct: 155 -LNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRD 213
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+VSW ++I+G++Q +A+ +F +M+ G++ ++ +VS LSACA+ G + G +H+
Sbjct: 214 LVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHD 273
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + + T LVD YAKCG I+ A +F +K L TW AMI GLA+HG E
Sbjct: 274 YTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGEL 333
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ YF+KM+ SG +PDG F+++L C +SG V A N FD MR Y + +KH+ +
Sbjct: 334 TVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMA 393
Query: 441 NLLSRVGQVDKALNFINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
+LL R G +++A I +MP+ + W L CR H + +IA+ A +L+
Sbjct: 394 DLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALS- 452
Query: 497 SIPQAMSYCQTFMQQKGDGRTWRE 520
P+ + ++ + W E
Sbjct: 453 --PEDGGVYKVMVEMYANAERWEE 474
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP +N+ +S S ++ + IH LF S + T L+ + ID A+
Sbjct: 246 KP-DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAM 304
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF+ + K L +N +I GLA + + + + +F M+ ++P+ +T+ V +
Sbjct: 305 EIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSG 364
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
L+ R L + +S + + ++ + +AD+ + G A ++ ++ P + E +L
Sbjct: 365 LVDEARNLFDQM-RSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLL 423
Query: 201 LWNVLINGC 209
W+ L+ GC
Sbjct: 424 AWSGLLGGC 432
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 242/465 (52%), Gaps = 44/465 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
LI S S ++ QIHA I+ HNL R + +L + + H I ++L++F +
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +F I + N +V +L + PN T+ + KS ++ S G+ +H
Sbjct: 95 LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHT 150
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G+ D +V L D+Y + G A KVFD
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR------------------------ 186
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP++++ S ++I + ++G+++ A LF+ M E+ +VSW MI+G++Q
Sbjct: 187 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQ 235
Query: 274 NGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+G AL +F ++L G + ++ TVV+ALSAC+++GALE G +H ++ + L
Sbjct: 236 HGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK 295
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
+ T L+DMY+KCG++E A LVF +T KD++ W AMI G A+HG + A++ F +M +
Sbjct: 296 VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT 355
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +P F+ L AC ++G V + F+SM +Y I+P ++H+ +V+LL R GQ+ +
Sbjct: 356 GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
A I M D V+W ++ +C+ H D + K + LN+
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 23/311 (7%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLS 124
+T +I+ + +++ A ++FD +++ +NV+I G A++ + F +L
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+P+ +T + + + L GR +H + S + + V L DMY + G A
Sbjct: 255 PKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAV 314
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSLI 237
VF++TP K+ ++ WN +I G + GY + A+ LF G+ P +++ +
Sbjct: 315 LVFNDTPRKD----IVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD--ITFIGTL 368
Query: 238 DGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
G + + +FE M ++ + + +++ + G+ ++A M +
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM---NM 425
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
A+ S L +C G G + Y+ + G I L ++YA G+ E +
Sbjct: 426 DADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSG-IYVLLSNIYASVGDYEGVAK 484
Query: 353 VFGETKEKDLL 363
V KEK ++
Sbjct: 485 VRNLMKEKGIV 495
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 218/411 (53%), Gaps = 37/411 (9%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
HKS+D A +FD +++ + L+ G A F M+ + +RPN +T
Sbjct: 191 HKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVA 250
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
++ + LL+ G LH + + GV
Sbjct: 251 AVSAIGQMGLLAFGIMLHKYVTEGGV---------------------------------- 276
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+ SV L N L++ K G +R A E+F M K+V SW S+++ + + GDL+ A +LF+
Sbjct: 277 -ARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFK 335
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
MP + VVSW+ MI +SQ + E+A+ +F +M+ AGV D T+VS LSACA++G L+
Sbjct: 336 DMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDL 395
Query: 315 GVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G ++ NYI N GL +G AL+DM+AKCG++ AS +F E E+++++W MI A
Sbjct: 396 GRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHA 455
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG+ E+AI+ F+++ PD FL +L +C +SG V +F M Y IEP V
Sbjct: 456 VHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRV 515
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+H+ +++LL +VG +++A MP D WGAL ACR H + +I
Sbjct: 516 EHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIG 566
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 18/231 (7%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV------GALEAGVRVH- 319
M+ GF + +AL +F +++ + A+ T V A+ A A G G +H
Sbjct: 107 MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHC 166
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ C G +G ALV YA +++ A VF E E+D+++WT ++ G A G +
Sbjct: 167 AALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226
Query: 380 QAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVK 434
+A + F +M + G P+ +A ++A GQ + L F M Y E SV
Sbjct: 227 EAWRLFCRMVVVGGMRPNAVTLVAAVSAI---GQ--MGLLAFGIMLHKYVTEGGVARSVN 281
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+V++ + G V A + M E D W ++ A D + A+
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGM-EVKDVYSWTSMVNAYAKCGDLESAE 331
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/465 (30%), Positives = 236/465 (50%), Gaps = 43/465 (9%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E +I+ L+H + QLR+IHA + H L ++I + +S + YA IF
Sbjct: 9 ERNILRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQ 68
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+ +FN +I+G + N F+ F M + P+ T + K+ +SL +L LG+
Sbjct: 69 NPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKC 128
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H ++ G E + +R+ + ++Y G A KVFDE
Sbjct: 129 MHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDE--------------------- 167
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
M +++V W +I GF ++GD+ LF QM ++ VVSW MI+
Sbjct: 168 --------------MYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISC 213
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN----D 326
+Q+ +AL +F MLD G + ++ TVV+ L CA++G+++ G +H+Y + D
Sbjct: 214 LAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRD 273
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
F A+G ALVD Y K G E A VF E K++++W +I GLA++G E ++ +
Sbjct: 274 FV---AVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLE 330
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+MM G P+ F+ +L+ C ++G + SM + IEP ++H+ +V+LL R
Sbjct: 331 EMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRS 390
Query: 447 GQVDKALNFINKMP-ETPDFVIWGALFCACRTHKDTKIAKIALQS 490
G V +A + I MP P+ +WG+L ACRTH D ++A +A++
Sbjct: 391 GCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKE 435
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+ A +FD KN+ +N LI GLA N + + + M+ VRPN T+ V
Sbjct: 292 ETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCC 351
Query: 140 ASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L GR L +V+ +E + D+ + G R A+ + P + +
Sbjct: 352 AHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMP--GGAPN 409
Query: 199 VLLWNVLINGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
LW L++ C G + A EL + P N ++V L + + + K +
Sbjct: 410 AALWGSLLSACRTHGDVELAHLAVKELIDLEP-WNSGNYVLLSNMYAEEERWDKVANVRG 468
Query: 255 QMPEKGV 261
M EK V
Sbjct: 469 MMREKNV 475
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 244/486 (50%), Gaps = 13/486 (2%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I S + S+ T +I ++ Q + +HA++I+ L +S+ ++LIS + +
Sbjct: 20 IYRSFQSSSLHTFDELIKTYTRDHALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQ 79
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ +FD N + VLI + + +Q + F M +RPN+ P V ++
Sbjct: 80 LSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRA 139
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L G+ LH +I++ E D V L DMY + A KVFD EK+
Sbjct: 140 CGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGMQEKD---- 195
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
++ N ++ G ++ G+ ++ L M K N+ +W +LI GF + GD ELF
Sbjct: 196 LVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQELFG 255
Query: 255 QMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
M E V+SWT++I+ F QN E A A F QML G N T+ S L ACA +
Sbjct: 256 LMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLA 315
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
+ G +H Y + +A+VDMY+KCG I A ++F + E+ +TW +MI+
Sbjct: 316 NVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTVTWNSMIF 375
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G A HG ++AI+ F +M + + D F A+LTAC + V+L + F M Y I
Sbjct: 376 GYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQSLFLLMHEKYKI 435
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++H+ +++LL R G++ +A + I MP PD +WGAL ACR H + +A+IA +
Sbjct: 436 VPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQHGEIDLAEIAAR 495
Query: 490 SSCSLN 495
L
Sbjct: 496 HLAELE 501
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 226/454 (49%), Gaps = 42/454 (9%)
Query: 14 APTTNIK----SSHKPSNN---ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
AP N + +H SNN ++L+ ++ ++ + A+II +NL +
Sbjct: 8 APVKNARFLNSHTHNHSNNKPKFGSQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLV 67
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+L+ ++ +DYA IFD + +N +IR N + Q + + M+
Sbjct: 68 RKLLRLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFS 127
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P++ T+PFV K+ S L G+ +H +K+G D F+ L D+Y +
Sbjct: 128 PDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFK---------- 177
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
C + Y RK LF M ++V SW + + G + G+L
Sbjct: 178 ----------------------CGDLDYARK---LFDKMAVRSVVSWTTFVAGLVACGEL 212
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A F++MP + VVSWTAMING+ +N ++A +F +M A VR N FT+V L AC
Sbjct: 213 DTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRAC 272
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
++G+LE G R+H Y N F + +GTAL+DMY+KCG+IE A VF E ++K L TW
Sbjct: 273 TELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWN 332
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+MI L +HG ++A+ F +M + PD F+ +L AC + V+ +F M
Sbjct: 333 SMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEH 392
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
Y I P ++H+T ++ L +R +++ +N MP
Sbjct: 393 YGITPMLEHYTCMIELYTRAAMLNEVSELVNSMP 426
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 42/466 (9%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
I+ ++S++ S +LRQIHAQ+I NL ++LI+ SL +DYA S+
Sbjct: 4 ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
F N IF LI+G ++ S+ + + ML + + + P V K+ L
Sbjct: 64 FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
GR +H ++K+ + +D FV + MY+ G+ A +VFD
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR-------------- 169
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
MP ++V SW S+I G+++ G+++ A ++FE M +K VV+
Sbjct: 170 ---------------------MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVT 208
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT+MI+ + QN KAL +F +ML G+R + +VS LSA A +G +E G +H Y+S
Sbjct: 209 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 268
Query: 324 CNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
N L G IG+AL+DMY+KCG IE A VF + +++ W +MI GLAIHG +A
Sbjct: 269 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 328
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F +M EP+ FL +L+ C + G V+ +F+SM Y I P ++H+ +++
Sbjct: 329 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 388
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G+++ AL I MP D + W A+ A H +I K A
Sbjct: 389 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSA 434
>gi|242077724|ref|XP_002448798.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
gi|241939981|gb|EES13126.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
Length = 577
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/498 (30%), Positives = 236/498 (47%), Gaps = 43/498 (8%)
Query: 32 THIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFD 87
+ + SL+ S +Q QIH + L L + L+ A+ +A +F
Sbjct: 7 SRLPSLLKDCASKRQFDQIHGLFVTSPSLRRLLPG--LPALLVRRATELGDTAHADLLFS 64
Query: 88 HFT------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS----VRPNRLTYPFVSK 137
F P + ++N +IRG A + + + F M R + + P+ TYP V
Sbjct: 65 SFRETEPTGPGAVALYNAMIRGCAYHGPHEGALELFAEMPRRARGEGLAPDSFTYPHVVD 124
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--- 194
+ A L + +HC ++K G+ V L YV G A +VFD +K+
Sbjct: 125 ACARLRMWRAAEAVHCRVLKEGLAAVPAVSSSLLAFYVARGSLGDARRVFDGFRDKSIGL 184
Query: 195 ------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV 230
++ V+ WN ++ + + A ELF MP KNV
Sbjct: 185 SNRMVSVYVRAGDVTSAREVFDAMETRDVVSWNAMLTAYVRTADIVAAKELFAAMPVKNV 244
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
SW ++I GD LF++MPE+ +VSW +++ ++++G +AL MF +ML
Sbjct: 245 ISWTTMIRALSDAGDFAGMRGLFDRMPERNLVSWNCILSSYTRHGRFWQALQMFPRMLLE 304
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+ + FTVVS LSAC + L G +H + + +GTALV+MYA CG++ A
Sbjct: 305 GLNPDSFTVVSVLSACENLRKLRLGRWIHANLVTPALQVHAEVGTALVEMYAMCGDVARA 364
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+VF + KD+ +W MI LA+H R + A++ F M G P+ F+ +L AC Y
Sbjct: 365 FVVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMRKQGFGPNHFTFMGVLLACRYG 424
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
V FD M+ +Y I PS++H+T +++LLS G VD+A+ + MP PD +W A
Sbjct: 425 SLVDEGRRMFDMMQKEYCIPPSLQHYTCLIDLLSCSGHVDEAVTVLQGMPCRPDSDVWRA 484
Query: 471 LFCACRTHKDTKIAKIAL 488
L CR D AK A+
Sbjct: 485 LLGGCRIEADLGSAKEAI 502
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/495 (31%), Positives = 245/495 (49%), Gaps = 50/495 (10%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKN 93
++ +H + L+Q+HA ++ A+ T L+ ASL S + YA +FD N
Sbjct: 232 VAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPN 291
Query: 94 LHIFNVLIRGLAE-----NSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSL 147
+ +++ ++ A H + ++ F+ MLR PN+ YP V ++ ++ + L
Sbjct: 292 VFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGV-QL 350
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
R +HC K G F+R L D Y + G A K+FD ++N V+ W L++
Sbjct: 351 VRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRN----VVSWTALVS 406
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G ++ G + A+ LF MP+++V +W ++I G
Sbjct: 407 GYARAGKVGDAIVLFERMPQRDVPAWNAIIAG---------------------------- 438
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCN 325
+QNG +A+ +F +M+D G R N TV LSAC +G L+ G +H Y SC
Sbjct: 439 ---CTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCV 495
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
FG ++ L+DMY KCGN+ A +F ++ L TW ++I LA+HG E AI F
Sbjct: 496 GFG--SSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 553
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
M G +PD F+ +L AC + G V L +F+ M ++ IEP ++H+ VV+LL R
Sbjct: 554 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 613
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
G+ A+NFIN M PD VIWG+L ACR H+ ++A+ A+++ LN P +Y
Sbjct: 614 AGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLN---PSNANYV 670
Query: 506 QTFMQQKGDGRTWRE 520
+G W E
Sbjct: 671 VMLANLYSEGGFWEE 685
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 155/495 (31%), Positives = 245/495 (49%), Gaps = 50/495 (10%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKN 93
++ +H + L+Q+HA ++ A+ T L+ ASL S + YA +FD N
Sbjct: 14 VAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPN 73
Query: 94 LHIFNVLIRGLAE-----NSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSL 147
+ +++ ++ A H + ++ F+ MLR PN+ YP V ++ ++ + L
Sbjct: 74 VFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGV-QL 132
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
R +HC K G F+R L D Y + G A K+FD ++N V+ W L++
Sbjct: 133 VRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRN----VVSWTALVS 188
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G ++ G + A+ LF MP+++V +W ++I G
Sbjct: 189 GYARAGKVGDAIVLFERMPQRDVPAWNAIIAG---------------------------- 220
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCN 325
+QNG +A+ +F +M+D G R N TV LSAC +G L+ G +H Y SC
Sbjct: 221 ---CTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCV 277
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
FG ++ L+DMY KCGN+ A +F ++ L TW ++I LA+HG E AI F
Sbjct: 278 GFG--SSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 335
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
M G +PD F+ +L AC + G V L +F+ M ++ IEP ++H+ VV+LL R
Sbjct: 336 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 395
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
G+ A+NFIN M PD VIWG+L ACR H+ ++A+ A+++ LN P +Y
Sbjct: 396 AGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLN---PSNANYV 452
Query: 506 QTFMQQKGDGRTWRE 520
+G W E
Sbjct: 453 VMLANLYSEGGFWEE 467
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 154/498 (30%), Positives = 239/498 (47%), Gaps = 44/498 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+ T + I+ + + ++IH + + + + LI++ +D A +F
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +++ +N +I G N S + FV ML L V + T + A++ LS
Sbjct: 612 DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LGR LH VK+ + L DMY + G A + F++ +K +V+ W LI
Sbjct: 672 LGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQK----TVVSWTSLI 727
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWV-------------------------------- 234
+ G A+ LF M K V+ V
Sbjct: 728 AAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMA 787
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+L+D + + G +++A +F Q+P K +VSW MI G+S+N +AL +F +M
Sbjct: 788 LCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM 847
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
R + T+ L AC + ALE G +H I N + + + AL+DMY KCG++
Sbjct: 848 QKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSL 906
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A L+F EKDL+TWT MI G +HG +AI F+KM +G +PD F +IL AC
Sbjct: 907 VHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYAC 966
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG + FF+SM + +EP ++H+ +V+LL+R G + KA N I MP PD I
Sbjct: 967 SHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATI 1026
Query: 468 WGALFCACRTHKDTKIAK 485
WGAL C CR H D ++A+
Sbjct: 1027 WGALLCGCRIHHDVELAE 1044
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 183/396 (46%), Gaps = 46/396 (11%)
Query: 118 VFMLRLSVRP--NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
V +LR+S + + Y + + A L G+ +H +I +G+ + + L MYV
Sbjct: 438 VELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYV 497
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-------- 227
G R ++FD NK V LWN++++ +KIG R+++ LF M K
Sbjct: 498 SCGALREGRRIFDHILSDNK---VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSY 554
Query: 228 ------------------KNVASWV-------------SLIDGFMRKGDLKKAGELFEQM 256
K + V SLI + + G++ A +LF+++
Sbjct: 555 TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL 614
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
++ VVSW +MI+G NG + AL F QML V + T+V++++ACA VG+L G
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGR 674
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+H F + L+DMY+KCGN+ A F + +K +++WT++I G
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
Y+ AI+ F +M G PD ++L AC + + + +R + + +
Sbjct: 735 LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNN-MALCLPVS 793
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++++ ++ G +++A +++P D V W +
Sbjct: 794 NALMDMYAKCGSMEEAYLVFSQIP-VKDIVSWNTMI 828
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 3/236 (1%)
Query: 240 FMRKGDLKKAGELFEQ-MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
++ G L++ +F+ + + V W M++ +++ G+ +++ +F +M G+ N +T
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
L A +G + R+H + FG + +L+ Y K G +++A +F E
Sbjct: 556 FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
++D+++W +MI G ++G A+++F +M+ D + + AC G + L
Sbjct: 616 DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG-R 674
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
V + ++++ S+ G ++ A+ KM + V W +L A
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT-VVSWTSLIAA 729
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
F + G+ A+ + + + N ++ S L CA+ L+ G VH+ IS N ++
Sbjct: 428 FCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISSNGIPIE 485
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
G +G LV MY CG + +F + + W M+ A G Y ++I FKKM
Sbjct: 486 GVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQ 545
Query: 390 YSGTEPDGTVFLAILTACWYS----GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS- 444
G + F IL C+ + G+ K + F + +TVV +L++
Sbjct: 546 KLGITGNSYTFSCILK-CFATLGRVGECKRIHGCVYKLGFGSY-------NTVVNSLIAT 597
Query: 445 --RVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ G+VD A +++ + D V W ++ C
Sbjct: 598 YFKSGEVDSAHKLFDELGDR-DVVSWNSMISGC 629
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 246/494 (49%), Gaps = 50/494 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIIL-----HNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+ + + S + +L Q+ +Q+I+ H LFA+S I S + + A +FDH
Sbjct: 10 LFAALESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPR----ATFLFDH 65
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCIS-HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
+ N +IR A F + + ++ ML SV PN T+P + K +
Sbjct: 66 LHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFRE 125
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G H IVK G D F R L MY G+ A VFDE+ + ++ +N +I+
Sbjct: 126 GLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLD----LVSYNSMID 181
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G K G + A ++F MP ++V SW LI G++ GDL A ELFE +PE+ VSW M
Sbjct: 182 GYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCM 241
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVR---------------------------------- 293
I+G ++ G A+ FF + A VR
Sbjct: 242 IDGCARVGNVSLAVK-FFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREA 300
Query: 294 -ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
N+ T+VS L+ACA +G L G+ VH++I N+ + T L+ MYAKCG ++ A
Sbjct: 301 VPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKG 360
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E + +++W +MI G +HG ++A++ F +M +G +P+ F+++L+AC ++G
Sbjct: 361 VFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGM 420
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V +FD M+ Y IEP V+H+ +V+LL+R G V+ + I +P IWGAL
Sbjct: 421 VMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALL 480
Query: 473 CACRTHKDTKIAKI 486
C H D+++ +I
Sbjct: 481 SGCSNHLDSELGEI 494
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 226/411 (54%), Gaps = 18/411 (4%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF---VS 136
D + +F KN+ +N +I G E+ +F M P R T + +S
Sbjct: 95 DESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM------PQRNTASWNAMIS 148
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
V + R + ++ + Y A V D Y ++G+ A +F+ P+KN
Sbjct: 149 GLVRYDRVEEASRLFEEMPRRNVISYTAMV-----DGYAKIGEIEQARALFNCMPQKN-- 201
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
V+ W V+I+G + G +A LF MP KN+ + ++I G+ ++G KA LF+Q+
Sbjct: 202 --VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 259
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + + SW AMI G++QNG E+AL + QML G++ + T++S L+AC+ + +L+ G
Sbjct: 260 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGR 319
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ H + + + + +I AL+ MY KCG+I + L F + D+++W AMI A HG
Sbjct: 320 KTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 379
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
Y++A+ F +M + EPDG FL++L+AC ++G+V +LN+F+SM Y I P +H
Sbjct: 380 FYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHF 439
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V++LSR GQV+KA I +MP D IWGAL AC H + K+ ++A
Sbjct: 440 ACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELA 490
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 163/368 (44%), Gaps = 53/368 (14%)
Query: 146 SLGRGLHCLIVKSGVEYDAFV-RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
S R H L +K D + V + ++ + G A ++FDE P ++ + WN
Sbjct: 29 SFNRQFHPLSIKLFSTQDVYAFNVQIGNL-ARAGNIGAARQLFDEMPHRD----TVSWNS 83
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
+I G K G ++ LFG+MP KNV SW S+I G + + +A + F+ MP++ SW
Sbjct: 84 IITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASW 143
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG--------- 315
AMI+G + E+A +F +M R N + + + AK+G +E
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEM----PRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ 199
Query: 316 -------VRVHNYISCNDFGL----------KGAIG-TALVDMYAKCGNIEAASLVFGET 357
V + Y+ F K + TA++ Y K G + A ++F +
Sbjct: 200 KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 259
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+DL +W AMI G A +G E+A++ +M+ G +PD + +++LTAC +L
Sbjct: 260 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC-------SSL 312
Query: 418 NFFDSMRFDYFI------EPSVKHHTVVVNLLSRVGQV-DKALNFINKMPETPDFVIWGA 470
R + + E + ++ + + G + D L F + + PD V W A
Sbjct: 313 ASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAF--RQIDHPDVVSWNA 370
Query: 471 LFCACRTH 478
+ A H
Sbjct: 371 MIAAFARH 378
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 34/305 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ D A +FD ++L +N +I G A+N + + ML++ ++
Sbjct: 237 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG---KTRGA 183
P+ T V + +SL+ L GR H L++KSG E + L MY + G + A
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG 239
F+ D V+ WN +I ++ G+ +A+ FG M V +++SL+
Sbjct: 357 FRQIDHP-------DVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409
Query: 240 FMRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + ++ F M E + + +++ S+ G+ EKA + +M
Sbjct: 410 CGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM------- 462
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD--MYAKCGNIEAASL 352
+ C GAL A VH + + K + + Y NI AA+
Sbjct: 463 ------PFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 516
Query: 353 VFGET 357
++GE
Sbjct: 517 MWGEV 521
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 133/327 (40%), Gaps = 38/327 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++ + I+ A ++F+ KN+ + V+I G EN F + F M
Sbjct: 175 TAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------ 228
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKT 180
P+ K++ +++ + G K+ + +D LA Y Q G
Sbjct: 229 PD--------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 280
Query: 181 RGAFKVFDE------TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
A K+ + P+ + SVL CS + L++ + ++ K S +
Sbjct: 281 EEALKLHSQMLKMGMQPDHSTLISVL------TACSSLASLQEGRKTHVLVLKSGYESRI 334
Query: 235 S----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
S LI + + G + + F Q+ VVSW AMI F+++G ++ALA F +M
Sbjct: 335 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 394
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTALVDMYAKCGNIEA 349
V + T +S LSAC G + + N I + LVD+ ++ G +E
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 454
Query: 350 ASLVFGETK-EKDLLTWTAMIWGLAIH 375
A + E E D W A++ +H
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVH 481
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 229/456 (50%), Gaps = 41/456 (8%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
Q++Q+HA H L T L+ L ++ YA +FD + ++N LI+ +
Sbjct: 3 QIKQLHA----HCLRTGVDETKDLLQRLLLIPNLVYARKLFDLHRNPCIFLYNKLIQSYS 58
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ I + + +RPN T+ F+ + AS S R LH +SG E D+F
Sbjct: 59 VHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSF 118
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
LI +K+G L A +F M
Sbjct: 119 C-----------------------------------CTALITAYAKLGALCCARRVFDEM 143
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
++V W ++I G+ R+GD+K A ELF+ MP K V SWT +I+GFSQNG +AL MF
Sbjct: 144 SNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFL 203
Query: 286 QM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M D V+ N T+VS L ACA +G LE G R+ Y N F + A ++MY+KC
Sbjct: 204 CMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKC 263
Query: 345 GNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G I+ A +F E +++L++W +MI LA HG++++A++ + +M+ G PD F+ +
Sbjct: 264 GMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGL 323
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + G V SM + I P ++H+ +++LL RVG++ +A + I MP P
Sbjct: 324 LLACVHGGMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKP 383
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
D V+WG L AC H + +IA+IA ++ L + P
Sbjct: 384 DAVVWGTLLGACSFHGNVEIAEIASEALMKLEPTNP 419
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 134/310 (43%), Gaps = 47/310 (15%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---- 100
+ LR +H+Q + S T LI++ + ++ A +FD + +++ ++N +
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGY 158
Query: 101 ---------------------------IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTY 132
I G ++N ++ ++ F+ M + SV+PN +T
Sbjct: 159 QRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITL 218
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V + A+L L +GR L ++G + +VR +MY + G A ++FDE
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEI-- 276
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
+++ WN +I + G +A+EL+ M + + ++V L+ + G + K
Sbjct: 277 -GNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLK 335
Query: 249 AGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
EL + M E +S + MI+ + G+ ++A + M ++ + + L
Sbjct: 336 GKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTM---PMKPDAVVWGTLL 392
Query: 304 SACAKVGALE 313
AC+ G +E
Sbjct: 393 GACSFHGNVE 402
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 153/522 (29%), Positives = 255/522 (48%), Gaps = 75/522 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRG 103
+ ++++HA +++ L +++I +LH+S + A +F ++N L+RG
Sbjct: 855 EAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRG 914
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
LA++ + I + ++P+ LT+PFV K+ A G +H ++K G D
Sbjct: 915 LAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLD 974
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
FV L +Y G A VF+E K+ V+ WN LI G S+ L++ + LF
Sbjct: 975 IFVSNSLIYLYAACGALACARSVFNEMLVKD----VVSWNSLIGGYSQHNRLKEVLTLFK 1030
Query: 224 MMPKKNV-----------------ASWV----------------------SLIDGFMRKG 244
+M + V W +LID + R G
Sbjct: 1031 LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIG 1090
Query: 245 DLKKAGELFEQM-------------------------------PEKGVVSWTAMINGFSQ 273
L+ A ++F QM P K ++SW++MI +SQ
Sbjct: 1091 QLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQ 1150
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+L +F QM A V+ + + S LSACA +GAL+ G +H+Y+ N+ +
Sbjct: 1151 ASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIM 1210
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+L+DM+AKCG ++ A VF + +EKD L+W ++I GLA +G ++A+ F M+ G
Sbjct: 1211 ENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGP 1270
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ FL +L AC V+ L+ F+ M+ + +EP +KH+ VV++LSR GQ++KA+
Sbjct: 1271 RPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAV 1330
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+FI++MP PD V+W L ACRTH + +A++A + L+
Sbjct: 1331 SFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELD 1372
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 213/442 (48%), Gaps = 50/442 (11%)
Query: 63 SRITTQLISSASLHKSIDYA-----LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
SR+ + SS H+++ Y+ + TP + V + A F SH
Sbjct: 399 SRLCPRRSSSGLRHQALSYSSTAPVPATARSSTPPSRTALKVFDQSPAPWRAFLKAYSHG 458
Query: 118 VFML---------RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
F L R + + + FV K+ A L G LH L+V+ G E+ A+V
Sbjct: 459 PFPLEALHLFKHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHT 518
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L ++YV A KVFDE MP K
Sbjct: 519 ALINVYVMSRCLVEARKVFDE-----------------------------------MPVK 543
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
NV SW +I GF G+++ A LF+QMP + VVSWT +I+G+++ +AL + M+
Sbjct: 544 NVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMM 603
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
G+ ++ TV++ + A + +G + G ++ Y +G +L+D+YAK G+++
Sbjct: 604 AGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQ 663
Query: 349 AASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ VF E ++L++WT++I G A+HG +A++ F +M +G +P+ FL+++ AC
Sbjct: 664 NSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINAC 723
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G V+ L FF SM ++Y I+P +KH ++++L R G++ +A I +P + +
Sbjct: 724 SHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTV 783
Query: 468 WGALFCACRTHKDTKIAKIALQ 489
W L C + + + + A++
Sbjct: 784 WRILLGCCSKYGEVAMGERAIK 805
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 161/393 (40%), Gaps = 67/393 (17%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++YA +FD +N+ + LI G + ++ M+ + P+ +T V +
Sbjct: 561 VEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPA 620
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+++L + +G L+ K G+ DA V L D+Y ++G + + KVFDE ++ +
Sbjct: 621 ISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDR---RN 677
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS------------------- 235
++ W +I+G + G +A+ELF M K N +++S
Sbjct: 678 LVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFK 737
Query: 236 -----------------LIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE- 276
+ID R G L +A ++ E +P E V W ++ S+ GE
Sbjct: 738 SMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEV 797
Query: 277 --AEKALAMFFQML-----DAGVRANDFTVVSALSACAKV--------------GALEAG 315
E+A+ M + D V +N T + S + +EA
Sbjct: 798 AMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAV 857
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYA-KCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
++H ++ + + ++ +YA ++ +A VF + + W ++ GLA
Sbjct: 858 KKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQ 917
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ AI ++KK G +PD F +L AC
Sbjct: 918 SDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKAC 950
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 163/546 (29%), Positives = 259/546 (47%), Gaps = 70/546 (12%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRI-TTQLISSASLHKSI--DYALSIFDHFTPKNLHIF 97
S S KQ +Q+HA I++H L I Q++ SAS + + Y S+ H + +
Sbjct: 10 SLSVKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLHHSKSPDSFSW 69
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
IR ++ F+ + +V M R + P K+ A ++ G +H + K
Sbjct: 70 ACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQK 129
Query: 158 ---SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------------- 194
SG +V L D Y +LG A K+FDE E+N
Sbjct: 130 FGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 189
Query: 195 -------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ V+ WN +I+G ++ G + KA+ LF MP++N ASW ++I G++ GD+
Sbjct: 190 QRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDID 249
Query: 248 KAGELFEQMPEKGVVSWTAMINGFS-------------------------------QNGE 276
A F+ MP+ VSW MI+G+S QN
Sbjct: 250 SARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 309
Query: 277 AEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
++AL +F ML D V+ ++ T+ S +SAC+++G L G + +Y+ + G +
Sbjct: 310 PKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 369
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TAL+D+YAKCG+I+ A +F ++KDL+ +TAMI G I+G+ AI+ F +M+ +
Sbjct: 370 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ F+ +LTA ++G V+ F SM+ Y + PSV H+ ++V+LL R G++ +AL
Sbjct: 430 PNLITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLLGRAGRLQEALE 488
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
I MP P +WGAL ACR H + + +IA Q L P Y
Sbjct: 489 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE---PDTTGYXSLLSNIYAS 545
Query: 515 GRTWRE 520
G W +
Sbjct: 546 GERWDD 551
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/509 (30%), Positives = 252/509 (49%), Gaps = 38/509 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSI 85
+N T + L + S L QIHA I+ H+L ++ + T +++ ASL S L+I
Sbjct: 13 SNAERTCLHILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAI 72
Query: 86 FDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVS 136
+H ++ + N +I F + F + R + P+ T+ +
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK- 195
K A+ G LH +++K+GV +D +V L DMYV+ G A KVFDE ++K
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 196 --------------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
++ +N +I+G K+G + A ELF M ++N
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERN 252
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
V SW S++ G+ GD++ A +F+ MPEK V +W AMI G+ QN + AL +F +M
Sbjct: 253 VVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQT 312
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
A V N+ TVV L A A +GAL+ G +H + IGTAL+DMYAKCG I
Sbjct: 313 ASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITK 372
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A L F E++ +W A+I G A++G ++A++ F +M+ G P+ + +L+AC +
Sbjct: 373 AKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNH 432
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
G V+ +F++M + I P V+H+ +V+LL R G +D+A N I MP + +I
Sbjct: 433 CGLVEEGRRWFNAME-RFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILS 491
Query: 470 ALFCACRTHKDTKIAKIALQSSCSLNLSI 498
+ AC D A+ L+ ++ +
Sbjct: 492 SFLFACGYFNDVLRAERVLKEVVKMDEDV 520
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/497 (31%), Positives = 254/497 (51%), Gaps = 55/497 (11%)
Query: 34 IISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ IH + + L+QIHA +I LH+ F S++ S K I + FD
Sbjct: 8 LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKV------SEFFGKHIGFVDYAFDFL 61
Query: 90 TPKNLHI----FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+LH+ +N LI A + ++ + ++ P+ T+P V K+ +
Sbjct: 62 NQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H + VK G D +V+ L Y GK GA +VFDE ++ V+ W L
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRD----VVSWTGL 177
Query: 206 INGCSKIGYLRKAVELFGMMPK-KNVASWVS----------------------------- 235
I+G + G +A+ LF M NVA++VS
Sbjct: 178 ISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIG 237
Query: 236 ------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
L+D +++ L +A +LF+++P++ +VSWT++I+G Q + + +L +F+ M
Sbjct: 238 LVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI 297
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
+GV + + S LSACA +GAL+ G V YI IGTALVDMYAKCG IE
Sbjct: 298 SGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEM 357
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A +F +++ TW A++ GLA+HG +A+++F+ M+ +G P+ FLAILTAC +
Sbjct: 358 ALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCH 417
Query: 410 SGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
SG V ++F M F P ++H+ +++LL R G +D+A FI MP PD +IW
Sbjct: 418 SGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIW 477
Query: 469 GALFCACRTHKDTKIAK 485
GAL AC+ + + ++++
Sbjct: 478 GALLSACKANGNVELSQ 494
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
+++ S + I T ++S S + R + I + I T L+ +
Sbjct: 294 DMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCG 353
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I+ AL IF+ +N+ +N L+ GLA + H + HF M+ +RPN +T+ +
Sbjct: 354 CIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILT 413
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNK 195
+ L++ GR ++ + + + + D+ + G A+K P
Sbjct: 414 ACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMP---L 470
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF 222
VL+W L++ C G + + E+
Sbjct: 471 PPDVLIWGALLSACKANGNVELSQEIL 497
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/529 (27%), Positives = 258/529 (48%), Gaps = 67/529 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL-ISSASLHKSIDYALSIFDHFTPK 92
+ S + S+ S L+Q+HAQI+ L S+ + +L ISS +L S+DYALS+F+
Sbjct: 26 LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP 85
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
H+ N +R L+ + + + + M + +R ++P + K+++ + L G +H
Sbjct: 86 ETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIH 145
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKT-------------------------------R 181
L K G + D FV+ L MY G+
Sbjct: 146 GLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK------------------------ 217
A +F+E N ++ + +++ C + G L
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265
Query: 218 -----------AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
A+ LF M KN+ + +++ G+ + G ++ A +F QM +K +V W+A
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI+G++++ ++AL +F +M G++ + T++S ++ACA +GAL+ +H ++ N
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
FG I AL++MYAKCG++E A +F + K++++WT MI A+HG A+++F
Sbjct: 386 FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFH 445
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M EP+G F+ +L AC ++G V+ F SM ++ I P H+ +V+L R
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRA 505
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+ +AL + MP P+ +IWG+L ACR H + ++ + A + L+
Sbjct: 506 NLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELD 554
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 176/411 (42%), Gaps = 69/411 (16%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L+ + I A +FD +++ ++++I G ++ F + F M +
Sbjct: 159 VQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYN 218
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V P+ + V + LS G+ +H I+++ + D ++ L MY G A
Sbjct: 219 VEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLAL 278
Query: 185 KVFDETPEKNKSES---------------------------VLLWNVLINGCSKIGYLRK 217
+F++ KN S ++ W+ +I+G ++ ++
Sbjct: 279 NLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQE 338
Query: 218 AVELF------GMMPKK----------------NVASWV-----------------SLID 238
A+ LF G+ P + + A W+ +LI+
Sbjct: 339 ALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIE 398
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G L++A +F++MP K V+SWT MI+ F+ +G+A AL F QM D + N T
Sbjct: 399 MYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGIT 458
Query: 299 VVSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGE 356
V L AC+ G +E G ++ ++ I+ ++ K +VD++ + + EA LV
Sbjct: 459 FVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAM 518
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA 406
+++ W +++ +HG E K+++ + DG VFL+ + A
Sbjct: 519 PLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYA 569
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 229/483 (47%), Gaps = 47/483 (9%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ ++ A +FD +++ +N +I G N + + F ML L + + T V
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
++ +L LGR LH +K+ + + L DMY + G A +VF+ E+
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER--- 315
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNV 230
SV+ W +I G ++ G +V LF M K K+V
Sbjct: 316 -SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDV 374
Query: 231 ASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
+++ +L+D + + G + A +F +M K +VSW MI G+S+N
Sbjct: 375 HNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLP 434
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+AL +F +M + N T+ L ACA + ALE G +H +I N F L + AL
Sbjct: 435 NEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANAL 493
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
VDMY KCG + A L+F EKDL++WT MI G +HG +AI F +M SG EPD
Sbjct: 494 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 553
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F++IL AC +SG + FF+ MR + IEP +H+ +V+LL+R G + KA FI
Sbjct: 554 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 613
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517
MP PD IWGAL C CR + D K+A+ + L P+ Y +
Sbjct: 614 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE---PENTGYYVLLANIYAEAEK 670
Query: 518 WRE 520
W E
Sbjct: 671 WEE 673
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 177/347 (51%), Gaps = 29/347 (8%)
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
TY V + A L + GR +H +I + VE D + L MYV G R ++FD
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD-- 160
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
K +E V LWN+L+NG +KIG R+++ LF M + + ++ A
Sbjct: 161 --KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR-------------VESAR 205
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+LF+++ ++ V+SW +MI+G+ NG +EK L +F QML G+ + T+VS ++ C+ G
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L G +H Y FG + + L+DMY+K GN+ +A VF E+ +++WT+MI
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV---KLALNFF--DSMRF 425
G A G + +++ F +M G PD IL AC +G + K N+ + M+
Sbjct: 326 GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQS 385
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
D F+ ++++ ++ G + A + ++M + D V W +
Sbjct: 386 DLFVS------NALMDMYAKCGSMGDAHSVFSEM-QVKDIVSWNTMI 425
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 180/416 (43%), Gaps = 53/416 (12%)
Query: 34 IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
++S++ ++T L R +H I + + L+ S +++ A+ +F+
Sbjct: 254 MVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG 313
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+++ + +I G A + F M + + P+ T + + A LL G+
Sbjct: 314 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKD 373
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H I ++ ++ D FV L DMY + G A VF E K+ ++ WN +I G S
Sbjct: 374 VHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKD----IVSWNTMIGGYS 429
Query: 211 KIGYLRKAVELF----------------------------------------GMMPKKNV 230
K +A+ LF G ++V
Sbjct: 430 KNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHV 489
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
A+ +L+D +++ G L A LF+ +PEK +VSWT MI G+ +G +A+A F +M ++
Sbjct: 490 AN--ALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNI-E 348
G+ ++ + +S L AC+ G L+ G N + N K +VD+ A+ GN+ +
Sbjct: 548 GIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK 607
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
A + E D W A++ G I+ + A + + + EP+ T + +L
Sbjct: 608 AYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFE--LEPENTGYYVLL 661
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+ + I F + G +A+ + Q + T S L CA + +++ G R+H+
Sbjct: 68 ITDYNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHS 125
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I ND + G +G+ LV MY CG++ +F + + + W ++ G A G + +
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185
Query: 381 AIQYFKKMMYSG 392
++ FK+M G
Sbjct: 186 SLSLFKRMRELG 197
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 18/247 (7%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N+IT I+ S + ++ ++IH I+ + + L+ ++ A
Sbjct: 449 KP-NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 507
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD K+L + V+I G + + I+ F M + P+ +++ + + +
Sbjct: 508 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 567
Query: 144 LLSLGRGL------HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
LL G G +C I Y V D+ + G A+K P +
Sbjct: 568 LLDEGWGFFNMMRNNCCIEPKSEHYACIV-----DLLARAGNLSKAYKFIKMMPIE---P 619
Query: 198 SVLLWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
+W L+ GC + K E + +N +V L + + ++ +L E
Sbjct: 620 DATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRE 679
Query: 255 QMPEKGV 261
++ +G+
Sbjct: 680 RIGRRGL 686
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 161/578 (27%), Positives = 265/578 (45%), Gaps = 98/578 (16%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L S + Q +++H I+ + ++ LI++ ++ YA +FDH N
Sbjct: 11 LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70
Query: 94 L--------------------HIFNVL-----------IRGLAENSHFQSCISHFVFMLR 122
L IFN++ I G A + + ML+
Sbjct: 71 LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130
Query: 123 -LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
++ NR+T+ + + + LGR ++ I+K G D FV L DMY +LG
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190
Query: 182 GAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGY 214
A + FDE PE+N K + W ++I G + G
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250
Query: 215 LRKAVELFGMMP---------------------------------------KKNVASWVS 235
R+A+++F M K NV +
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSA 310
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+D + + +K A +F++MP+K V+SWTAM+ G+ QNG +E+A+ +FF+M GV +
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPD 370
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
DFT+ S +S+CA + +LE G + H + + AL+ +Y KCG+ E + +F
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFT 430
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E +D ++WTA++ G A G+ + I F++M+ G +PDG F+ +L+AC +G V+
Sbjct: 431 EMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEK 490
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
L +F+SM ++ I P V H T +++LL R G++++A NFIN MP PD V W L +C
Sbjct: 491 GLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSC 550
Query: 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
R H D +I K A S +L P + + KG
Sbjct: 551 RVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKG 588
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 155/508 (30%), Positives = 246/508 (48%), Gaps = 37/508 (7%)
Query: 19 IKSSHKPSNNIT-ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
+K+ P N + +++L+ L+Q+ A +I + +L+ +L
Sbjct: 42 LKNMAPPQNQLNLNNSVLALLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLAL 101
Query: 78 S-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFV 135
S + YA IFDH N++++ +I A +S S + + M+R PN YP V
Sbjct: 102 SNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHV 161
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKTRGAFKVFDETPEKN 194
KS + R +HC +++SG E V+ L D Y++ A +FDE E+N
Sbjct: 162 LKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERN 221
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
V+ W +I+G +++G + AV LF MP+++V SW +LI G+ + G +A LF
Sbjct: 222 ----VVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFR 277
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M +W G R N T V +LSAC G L
Sbjct: 278 RMIAVEAGAW------------------------GQGNRPNQVTAVCSLSACGHTGMLRL 313
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G +H Y+ N GL + ALVDMY KCG ++ A VF T E+ L +W +MI LA+
Sbjct: 314 GKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLAL 373
Query: 375 HGRYEQAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
HG+ + AI F++MM SG +PD F+ +L AC + G V+ +F+ M +Y IEP
Sbjct: 374 HGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQ 433
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
++H+ +V+LL R GQ ++A+ + M PD VIWG+L C+ H T +A+ +++
Sbjct: 434 IEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLI 493
Query: 493 SLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
++ P Y G+ W E
Sbjct: 494 DMD---PNNGGYGIMLANIYGELGKWDE 518
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 238/480 (49%), Gaps = 74/480 (15%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ + YA+S+F+ NL I+N + RG A + S + +V M+ L + PN T+PF+
Sbjct: 11 EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A L G +H ++K G E D +V L MYVQ + A KVFD + ++
Sbjct: 71 KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G + G ++A+ELF M K N
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190
Query: 230 VA--------------------------SWVS-------------LIDGFMRKGDLKKAG 250
V SW++ LID + + G+++ A
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF + K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +G
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLG 310
Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LKG ++ T+L+DMY+KCG+IEAA VF K L W
Sbjct: 311 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR A F +M + +PD F+ +L+AC ++G + L + F SM
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+Y I P ++H+ +++LL G +A I+ M PD VIW +L AC+ H + ++ +
Sbjct: 428 NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGE 487
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/424 (22%), Positives = 172/424 (40%), Gaps = 86/424 (20%)
Query: 43 STKQLRQIHAQII--------------------------LHNLFASSR-----ITTQLIS 71
++K+ QIH ++ H +F S T L++
Sbjct: 78 ASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVT 137
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ I+ A ++FD K++ +N +I G E +++ + F M++ +VRP+ T
Sbjct: 138 GYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDEST 197
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
V + A + LGR +H I G + + L D Y + G+ A +F
Sbjct: 198 MVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS 257
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------------N 229
K+ V+ WN+LI G + + ++A+ LF M + +
Sbjct: 258 YKD----VISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAID 313
Query: 230 VASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ W+ SLID + + GD++ A ++F M K + +W AMI G
Sbjct: 314 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFG 373
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-----HNYISCN 325
F+ +G A A +F +M ++ +D T V LSAC+ G L+ G + HNY
Sbjct: 374 FAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITP 433
Query: 326 DFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
G ++D+ G EA ++ T E D + W +++ +HG E ++
Sbjct: 434 KLEHYG----CMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKF 489
Query: 385 FKKM 388
+ +
Sbjct: 490 AQNL 493
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 19/310 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T +IS S S + RQ+H+ I H ++ +I LI S
Sbjct: 187 MKTNVRPDESTMVT-VISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGE 245
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F + K++ +N+LI G + ++ + F MLR PN +T + +
Sbjct: 246 METACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHA 305
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VF+ K
Sbjct: 306 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHK--- 362
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
S+ WN +I G + G A ++F M K + ++V L+ G L +
Sbjct: 363 -SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHI 421
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M ++ + MI+ +G ++A M M + + S L AC
Sbjct: 422 FRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMT---MEPDGVIWCSLLKACK 478
Query: 308 KVGALEAGVR 317
G +E G +
Sbjct: 479 MHGNVELGEK 488
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 246/489 (50%), Gaps = 44/489 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S++ K L+QIHAQII L ++ ++ L+++ + A IF H KN+
Sbjct: 29 SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVV 88
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ +LI GLA+N F I F M + +PN +T V + A+L L+ + + +HC
Sbjct: 89 SWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V+ G E + FV L DMY + G A ++F+ E+N V+ WN +++G S G+
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERN----VVSWNAIVSGYSDHGFS 204
Query: 216 RKAVELFGMMPKKNV------------ASW---------------------------VSL 236
+A++LF +M +K + AS +L
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRAN 295
+D ++ + A +F +M K V +WT M+ GFS ++A+ F +ML ++ +
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLD 324
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
++ LS+C+ GAL+ G RVH F +G+A++DMYA CGN+E A F
Sbjct: 325 SIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFY 384
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
EKD++ W AMI G ++G AI F +M SG +PD + F+++L AC ++G V
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
L F M P+++H+ V+++L R GQ+D A +FIN MP PDF ++ L AC
Sbjct: 445 GLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGAC 504
Query: 476 RTHKDTKIA 484
R H + K+
Sbjct: 505 RIHGNIKLG 513
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 165/380 (43%), Gaps = 42/380 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L+ S + A +F+ + +N+ +N ++ G +++ + I F M R
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKG 218
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ + T + + S+ L +G G+H I+++G E D ++ L D+YV A
Sbjct: 219 LLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAH 278
Query: 185 KVFDETPEKN---------------------------------KSESVLLWNVLINGCSK 211
+VF E K+ K +S++L +L + CS
Sbjct: 279 RVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGIL-SSCSH 337
Query: 212 IGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G L++ + + K N+ ++ID + G+L+ A F M EK VV W AM
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G NG A+ +F QM +G+ ++ T VS L AC+ G + G+++ ++
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457
Query: 328 GLKGAIGTA-LVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ A ++D+ + G ++AA S + + D ++ ++ IHG + +
Sbjct: 458 DIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517
Query: 386 KKMMYSGTEPDGTVFLAILT 405
+K+ EP+ + +L+
Sbjct: 518 QKIFE--MEPNDAGYYVLLS 535
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 239/471 (50%), Gaps = 58/471 (12%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSI 85
I E+H +L H+ +Q+HA I +NL SS + T L+ + I Y +
Sbjct: 16 IIESHCTTLNHA-------KQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLL 68
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F N +++ LIR A N F I + ML +V P T+ A SLL
Sbjct: 69 FSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFS------ALFSLL 122
Query: 146 ---SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
SLG LH AF+ + D+YV
Sbjct: 123 KNPSLGSQLH---------LHAFLFGFVNDLYVG-------------------------- 147
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N +I+ K G L A ++F MP ++V +W LI + R GD+ A ELF +P K +V
Sbjct: 148 NTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMV 207
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+WT+M+ G+SQN +KAL F +M +AGV ++ T+V A+SACA++G +
Sbjct: 208 AWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIA 267
Query: 323 SCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ FG G+ +G+AL+DMY+KCGN+E A VF KE ++ ++++MI G A+HGR
Sbjct: 268 ESSRFG-SGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRAR 326
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
AI+ F +M+ +G +P+ F+ + TAC ++G V+ F +M+ Y + P+ H+ +
Sbjct: 327 SAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACM 386
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+LL R G ++KAL + MP P+ +WGAL A H + +A+IA +S
Sbjct: 387 ADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRS 437
>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 242/449 (53%), Gaps = 18/449 (4%)
Query: 50 IHAQIILHNLFASSRITTQLIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+HA ++ + +RI +L+S K +D A +FD +++ + V+I A
Sbjct: 38 LHAHLVTSGIARLTRIAAKLVSFYVECGKVLD-ARKVFDEMPKRDISGWVVMIGACARYG 96
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
++Q + F M + ++ + P + K+ +L G+ +HCL++K E DAF+
Sbjct: 97 YYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIVS 156
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CSKIGYLRKAVELF 222
L DMY + G+ A KVFD+ E++ ++++N +I+G + L K ++L
Sbjct: 157 SLIDMYSKFGEVVNARKVFDDLGEQD----LVVFNAMISGYANNSQADEALNLVKDMKLL 212
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAE 278
G+ P ++ +W +LI GF G+ +K E+ E M G VVSWT++I+G N + E
Sbjct: 213 GIKP--DIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDVVSWTSIISGLVHNFQNE 270
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
KA F QML G+ N T+ + L AC + ++ G +H Y G + +AL+
Sbjct: 271 KAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVRSALL 330
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMY KCG I A ++F +T +K +T+ +MI+ A HG ++A++ F +M +G + D
Sbjct: 331 DMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGEKLDHL 390
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F AILTAC ++G L N F M+ Y IEP ++H+ +V+LL R G++ +A +
Sbjct: 391 TFTAILTACSHAGLTDLGQNLFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAYEMMKT 450
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIA 487
M PD +WGAL ACR H + ++A+IA
Sbjct: 451 MRMEPDLFVWGALLGACRNHGNMELARIA 479
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 91/377 (24%)
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
LL G LH +V SG+ + L YV+ GK A KVFDE P+++ S W
Sbjct: 31 LLCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPKRDISG----WV 86
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWV----------------------------- 234
V+I C++ GY ++++++F M K+ + V
Sbjct: 87 VMIGACARYGYYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDREFGKMIHCLVLKC 146
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
SLID + + G++ A ++F+ + E+ +V + AMI+G++ N +A++AL +
Sbjct: 147 SFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYANNSQADEALNLV 206
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M G++ + T AL+ ++
Sbjct: 207 KDMKLLGIKPDIIT-----------------------------------WNALISGFSHM 231
Query: 345 GNIEAAS----LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
GN E S L+ + D+++WT++I GL + + E+A FK+M+ G P+
Sbjct: 232 GNEEKVSEILELMCLDGYMPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATI 291
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH----TVVVNLLSRVGQVDKALNFI 456
+L AC +K Y + ++ H + ++++ + G + +A+
Sbjct: 292 TTLLPACTTLANMKHGKEI-----HGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILF 346
Query: 457 NKMPETPDFVIWGALFC 473
K P+ +FC
Sbjct: 347 RKTPKKTTVTFNSMIFC 363
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 158/368 (42%), Gaps = 10/368 (2%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ IH ++ + + + I + LI S + A +FD ++L +FN +I G A N
Sbjct: 137 KMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYANN 196
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
S ++ M L ++P+ +T+ + + + + L+ G D
Sbjct: 197 SQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDVVSW 256
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ V + AF F + + L+ C+ + ++ E+ G
Sbjct: 257 TSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSVV 316
Query: 228 KNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+ +L+D + + G + +A LF + P+K V++ +MI ++ +G ++KA+ +
Sbjct: 317 TGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVEL 376
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMY 341
F QM G + + T + L+AC+ G + G + + + + ++ + +VD+
Sbjct: 377 FDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFHLMQ-TKYRIEPRLEHYACMVDLL 435
Query: 342 AKCGN-IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
+ G +EA ++ E DL W A++ HG E A K++ + EP+ +
Sbjct: 436 GRAGKLVEAYEMMKTMRMEPDLFVWGALLGACRNHGNMELARIAAKRL--AELEPENSGN 493
Query: 401 LAILTACW 408
+LT+ +
Sbjct: 494 GLLLTSLY 501
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 36/241 (14%)
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+ V + A ++ L G+ +H ++ + I LV Y +CG + A VF E
Sbjct: 18 SYVELIEANSRDRLLCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEM 77
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA----------- 406
++D+ W MI A +G Y++++ F++M G + D + ++L A
Sbjct: 78 PKRDISGWVVMIGACARYGYYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDREFGK 137
Query: 407 --------CWYSGQVKLALNFFDSMR-----------FDYFIEPSVKHHTVVVNLLSRVG 447
C + + + D FD E + +++ +
Sbjct: 138 MIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYANNS 197
Query: 448 QVDKALNFINKMPE---TPDFVIWGALFCA-CRTHKDTKIAKIALQSSCSLNLSIPQAMS 503
Q D+ALN + M PD + W AL + K+++I L+ C L+ +P +S
Sbjct: 198 QADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKVSEI-LELMC-LDGYMPDVVS 255
Query: 504 Y 504
+
Sbjct: 256 W 256
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 254/520 (48%), Gaps = 44/520 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+ +P +N T +I + + R IH + L + L+ +
Sbjct: 22 IRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I+ A +FD ++L + V+I G AE + F M V P+++ V +
Sbjct: 81 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L + R + I + + D + + DMY + G A ++FD EKN
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN---- 196
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKK-NVASWV----------------- 234
V+ W+ +I G RKA++LF GM+P K +AS +
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256
Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+L+D + + +++ A LF++MPE+ +V+WT MI G+++ G A +
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANE 316
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
+L +F +M + GV + +V+ + ACAK+GA+ + +YI F L +GTA++D
Sbjct: 317 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 376
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
M+AKCG +E+A +F +EK++++W+AMI HG+ +A+ F M+ SG P+
Sbjct: 377 MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 436
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+++L AC ++G V+ L FF M DY + VKH+T VV+LL R G++D+AL I M
Sbjct: 437 LVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
D +WGA ACRTHKD +A+ A S L P
Sbjct: 497 TVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNP 536
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 204/418 (48%), Gaps = 45/418 (10%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
++ G A+ + +C F ++R RP+ T PFV ++ L L +GR +H ++ K G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
++ D FV L DMYV+ + A +FD+ E++ ++ W V+I G ++ G +++
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD----LVTWTVMIGGYAECGKANESL 116
Query: 220 ELF------GMMPKK---------------------------------NVASWVSLIDGF 240
LF G++P K +V ++ID +
Sbjct: 117 VLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMY 176
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G ++ A E+F++M EK V+SW+AMI + +G+ KAL +F ML +G+ + T+
Sbjct: 177 AKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLA 236
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L AC+ + L+ G +H+ + L + ALVDMY KC IE A +F + E+
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER 296
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL+TWT MI G A G +++ F KM G PD + ++ AC G + A
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 356
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
D ++ F + V T ++++ ++ G V+ A ++M E + + W A+ A H
Sbjct: 357 DYIQRKKF-QLDVILGTAMIDMHAKCGCVESAREIFDRMEE-KNVISWSAMIAAYGYH 412
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 245/465 (52%), Gaps = 39/465 (8%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
+S KP ++ + ++SLI S S +Q++Q HAQ+I L + +L+ A+ S+
Sbjct: 6 TSAKPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC-ASLS 64
Query: 81 YALSIFDHFTPKNLHIFNVLIRG--LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
YA +FD +L I+N +I+ L+ +S S I L + PNR ++ F
Sbjct: 65 YAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF---- 120
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ + G GL GV+ VR+H V++G F V
Sbjct: 121 ----AFSACGNGL-------GVQEGEQVRIHA----VKVGLENNVFVV------------ 153
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
N LI K G + ++ ++F +++ SW +LI ++ G++ A ELF+ M E
Sbjct: 154 ----NALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRE 209
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VVSW+ +I G+ Q G +AL F +ML G + N++T+VSAL+AC+ + AL+ G +
Sbjct: 210 RDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWI 269
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGR 377
H YI + + + +++DMYAKCG IE+AS VF E K K + W AMI G A+HG
Sbjct: 270 HAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGM 329
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+AI F++M P+ F+A+L AC + V+ +F M DY I P ++H+
Sbjct: 330 PNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYG 389
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+V+LLSR G + +A + I+ MP PD IWGAL ACR +KD +
Sbjct: 390 CMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDME 434
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 170/551 (30%), Positives = 260/551 (47%), Gaps = 85/551 (15%)
Query: 15 PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHN-LFASSRITTQL 69
P + S P + E H ++L+ L+QIH+ II LHN LFA S++
Sbjct: 8 PFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFC 67
Query: 70 ISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
S S + + YALS+F H P N+ I+N LIR + S + F ML + P
Sbjct: 68 ALSPS--RDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYP 125
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N T+P + KS A + LH +K + V L MY Q+G+ R A VF
Sbjct: 126 NSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVF 185
Query: 188 DETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKAVE 220
D++ ++ ++ V+ WN +I G + G +A+
Sbjct: 186 DKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALA 245
Query: 221 LFGMMPKKNVA--------------------------SWV-------------SLIDGFM 241
F M + +V+ SWV +L+D +
Sbjct: 246 CFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYS 305
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
+ G++ A +LF+ M +K V+ W MI G+ E+AL +F ML V ND T ++
Sbjct: 306 KCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLA 365
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKG-------AIGTALVDMYAKCGNIEAASLVF 354
L ACA +GAL+ G VH YI D LKG ++ T+++ MYAKCG +E A VF
Sbjct: 366 VLPACASLGALDLGKWVHAYI---DKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVF 422
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+ L +W AMI GLA++G E+A+ F++M+ G +PD F+ +L+AC +G V+
Sbjct: 423 RSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVE 482
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L +F SM DY I P ++H+ +++LL+R G+ D+A + M PD IWG+L A
Sbjct: 483 LGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNA 542
Query: 475 CRTHKDTKIAK 485
CR H + +
Sbjct: 543 CRIHGQVEFGE 553
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 4/325 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A +VFD PEKN + WN +I G + + +A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF 320
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +NV+SW ++I G+ + GD+ +A F++MP++ +SW A+I G++Q+G E+AL
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 380
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G R N T S LS CA++ ALE G +VH + +G AL+ MY
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 440
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGNI+ A +VF +EK++++W MI G A HG ++A+ F+ M +G PD +
Sbjct: 441 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 500
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V +F SM DY I + KH+T +++LL R G++D A N + MP
Sbjct: 501 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 560
Query: 463 PDFVIWGALFCACRTHKDTKIAKIA 487
PD WGAL A R H +T++ + A
Sbjct: 561 PDAATWGALLGASRIHGNTELGEKA 585
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 174/393 (44%), Gaps = 68/393 (17%)
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
H +SC+ + +P+ P + S+A+ + + V+++ +
Sbjct: 13 HSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADI--------------VKWNIAITN 58
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
H+ + G+ A ++F+ P + S + WN +I+GC A +LF MP +
Sbjct: 59 HMRN-----GQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLARQLFEKMPTR 109
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
++ SW +I G +R +L+ A LF+QMPE+ VVSW AM++G++QNG ++A +F +M
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM- 168
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHN----------------YISCNDFGLKGA 332
N + L+A + G +E R+ Y+ N L A
Sbjct: 169 ---PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNR--LVDA 223
Query: 333 IG-------------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
G ++ YA+ G + A +F E+ +D+ TWTAM+ G +G +
Sbjct: 224 RGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLD 283
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A + F M E + + AI+ ++ A F++M +V +
Sbjct: 284 EARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTM 334
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ ++ G + +A NF ++MP+ D + W A+
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQR-DSISWAAII 366
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 52/305 (17%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+++ II+ Q R++ + N+ + +I+ + + I A + F
Sbjct: 296 NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS----WNTMITGYAQNGDIAQARNFF 351
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D ++ + +I G A++ + + + FV M R R NR T+ + A ++ L
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LG+ +H +VK+G+E +V L MY + G A+ VF+ EK V+ WN +I
Sbjct: 412 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK----EVVSWNTMI 467
Query: 207 NGCSKIGYLRKAVELF------GMMPKK-------------------------------- 228
G ++ G+ ++A+ LF G++P
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527
Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE---AEKALA 282
N + +ID R G L A L + MP E +W A++ +G EKA
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587
Query: 283 MFFQM 287
M F+M
Sbjct: 588 MIFEM 592
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 10/230 (4%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H +++ L + + L+ +ID A +F+ K + +N +I G A +
Sbjct: 414 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFV 166
+ + F M + + P+ +T V + + L+ G + + G+ ++
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWNVLINGCSKIGYLRKAVELFGM 224
+ D+ + G+ A + P + + + LL I+G +++G KA ++
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAKMIFE 591
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
M N +V L + + G G + +M ++GV SW + N
Sbjct: 592 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 641
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 243/491 (49%), Gaps = 50/491 (10%)
Query: 41 SNSTKQLRQIHAQIILHNLFASS------RITTQLISSASLHKSIDYALSIFDHFTPKNL 94
S S LR +H LH S + L++ ++ +D A +FD T +++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+N +I G N + +S FV ML + + T V A L+SLGR +H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VK+ + L DMY + G A VF E ++ SV+ + +I G ++ G
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGL 377
Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
+AV+LF G+ P K V W+ +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
L+D + + G +++A +F +M K ++SW +I G+S+N A +AL++F +L+
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 497
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
++ TV L ACA + A + G +H YI N + + +LVDMYAKCG + A ++F
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+ KDL++WT MI G +HG ++AI F +M +G E D F+++L AC +SG V
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
FF+ MR + IEP+V+H+ +V++L+R G + KA FI MP PD IWGAL C
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Query: 475 CRTHKDTKIAK 485
CR H D K+A+
Sbjct: 678 CRIHHDVKLAE 688
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 226/497 (45%), Gaps = 62/497 (12%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++ L S S K +++ I + S + ++L + + A +FD
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N+L+ LA++ F I F M+ V + T+ VSKS +SL + G
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
LH I+KSG V L Y++ + A KVFDE E++ V+ WN +ING
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSIINGY 271
Query: 210 SKIGYLRKAVELFGMM----PKKNVASWVS------------------------------ 235
G K + +F M + ++A+ VS
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331
Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
L+D + + GDL A +F +M ++ VVS+T+MI G+++ G A +A+ +F +M +
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+ + +TV + L+ CA+ L+ G RVH +I ND G + AL+DMYAKCG+++ A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
LVF E + KD+++W +I G + + +A+ F ++ PD +L AC
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC-- 509
Query: 410 SGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+ FD MR YF + V + +V++ ++ G + A + +
Sbjct: 510 -----ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCGALLLAHMLFDDIA- 561
Query: 462 TPDFVIWGALFCACRTH 478
+ D V W + H
Sbjct: 562 SKDLVSWTVMIAGYGMH 578
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
++ V + F ++G E A+ + + + T+ S L CA +L+ G
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
V N+I N F + +G+ L MY CG+++ AS VF E K + L W ++ LA G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAI 403
+ +I FKKMM SG E D F +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCV 201
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 225/411 (54%), Gaps = 18/411 (4%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF---VS 136
D + +F KN+ +N +I G E+ +F M P R T + +S
Sbjct: 95 DESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM------PQRNTASWNAMIS 148
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
V + R + ++ + Y A V D Y ++G+ A +F+ P+KN
Sbjct: 149 GLVRYDRVEEASRLFEEMPRRNVISYTAMV-----DGYAKIGEIEQARALFNCMPQKN-- 201
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
V+ W V+I+G + G +A LF MP KN+ + ++I G+ ++G KA LF+Q+
Sbjct: 202 --VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 259
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + + SW AMI G++QNG E+AL + QML G++ + T++S L+AC+ + +L+ G
Sbjct: 260 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGR 319
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ H + + + + +I AL+ MY KCG+I + L F + D+++W AMI A HG
Sbjct: 320 KTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 379
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
Y++A+ F +M + EPDG FL++L+AC ++G+V +LN+F+SM Y I +H
Sbjct: 380 FYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHF 439
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V++LSR GQV+KA I +MP D IWGAL AC H + K+ ++A
Sbjct: 440 ACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELA 490
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 163/368 (44%), Gaps = 53/368 (14%)
Query: 146 SLGRGLHCLIVKSGVEYDAFV-RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
S R H L +K D + V + ++ + G A +VFDE P ++ + WN
Sbjct: 29 SFNRQFHPLSIKLFSTQDVYAFNVQIGNL-ARAGNIGAARQVFDEMPHRD----TVSWNS 83
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
+I G K G ++ LFG+MP KNV SW S+I G + + +A + F+ MP++ SW
Sbjct: 84 IITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASW 143
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG--------- 315
AMI+G + E+A +F +M R N + + + AK+G +E
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEM----PRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ 199
Query: 316 -------VRVHNYISCNDFGL----------KGAIG-TALVDMYAKCGNIEAASLVFGET 357
V + Y+ F K + TA++ Y K G + A ++F +
Sbjct: 200 KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 259
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+DL +W AMI G A +G E+A++ +M+ G +PD + +++LTAC +L
Sbjct: 260 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS-------SL 312
Query: 418 NFFDSMRFDYFI------EPSVKHHTVVVNLLSRVGQV-DKALNFINKMPETPDFVIWGA 470
R + + E + ++ + + G + D L F + + PD V W A
Sbjct: 313 ASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAF--RQIDHPDVVSWNA 370
Query: 471 LFCACRTH 478
+ A H
Sbjct: 371 MIAAFARH 378
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 42/308 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ D A +FD ++L +N +I G A+N + + ML++ ++
Sbjct: 237 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG---KTRGA 183
P+ T V + +SL+ L GR H L++KSG E + L MY + G + A
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG 239
F+ D V+ WN +I ++ G+ +A+ FG M V +++SL+
Sbjct: 357 FRQIDHP-------DVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409
Query: 240 FMRKGDLKKAGELFEQM---------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
G + ++ F M PE + +++ S+ G+ EKA + +M
Sbjct: 410 CGHAGKVHESLNWFNSMIXSYKIVXRPE----HFACLVDILSRGGQVEKAYKIIQEM--- 462
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD--MYAKCGNIE 348
F + C GAL A VH + + K + + Y NI
Sbjct: 463 -----PFE-----ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIY 512
Query: 349 AASLVFGE 356
AA+ ++GE
Sbjct: 513 AAAGMWGE 520
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 131/339 (38%), Gaps = 84/339 (24%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I+ A ++F+ KN+ + V+I G EN F + F M P+ K
Sbjct: 186 EIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PD--------K 231
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ +++ + G Y + GKT A +FD+ P ++
Sbjct: 232 NIVAMTAMITG-------------------------YCKEGKTDKAKILFDQIPCRD--- 263
Query: 198 SVLLWNVLINGCSKIGYLRKAVEL------FGMMPKKNV--------ASWVSLIDG---- 239
+ WN +I G ++ G +A++L GM P + +S SL +G
Sbjct: 264 -LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 322
Query: 240 ---------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
+ + G + + F Q+ VVSW AMI F+++G +
Sbjct: 323 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 382
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTAL 337
+ALA F +M V + T +S LSAC G + + N I + L
Sbjct: 383 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACL 442
Query: 338 VDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIH 375
VD+ ++ G +E A + E E D W A++ +H
Sbjct: 443 VDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVH 481
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 252/505 (49%), Gaps = 48/505 (9%)
Query: 40 SSNSTKQLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
++ S KQ +Q+HA +I ++ + + + T+L + + + A IFD KN ++N
Sbjct: 71 NTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWN 130
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+IRG A N + + ML R + TYPFV K+ L L+ +GR +H +V
Sbjct: 131 FMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVC 190
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G+E D +V L MY + G A VFD E++ + WN +I+G +K A
Sbjct: 191 GLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTS----WNTMISGYAKNADSGTA 246
Query: 219 VELFGMMPKKNVASWVSLIDGFMRK-GDLKKAGE-------------------------- 251
+F +M K + + + + G + DLK E
Sbjct: 247 FLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIE 306
Query: 252 -------------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
LFE++ K VSW +MI G+++NG+A ++L +F +M G + T
Sbjct: 307 MYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVT 366
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
++ L AC ++ AL G+ +H+Y+ F +GTALVDMY+KCG++ + VF E
Sbjct: 367 FIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP 426
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+K L++W+AM+ G +HGR +AI M + PD VF +IL+AC ++G V
Sbjct: 427 DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKE 486
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F M +Y ++P++ H++ +V+LL R G +D+A I M P IW AL A R H
Sbjct: 487 IFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMS 503
K+ K+A+I+ Q +N P+ +S
Sbjct: 547 KNIKLAEISAQKVFDMN---PKVVS 568
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 220/436 (50%), Gaps = 37/436 (8%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
T L+ L ++ YA +FDH ++N LI+ + I + + +
Sbjct: 12 TKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGL 71
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RP+ T+ F+ + AS S R LH +SG E D+F
Sbjct: 72 RPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC------------------- 112
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
LI +K+G L A +F M K++V W ++I G+ R+GD
Sbjct: 113 ----------------CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 156
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALS 304
+K A ELF+ MP K V SWT +I+GFSQNG +AL MF M D V+ N TVVS L
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 216
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLL 363
ACA +G LE G R+ Y N F + A ++MY+KCG I+ A +F E +++L
Sbjct: 217 ACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC 276
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W +MI LA HG++++A+ F +M+ G +PD F+ +L AC + G V F SM
Sbjct: 277 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 336
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+ I P ++H+ +++LL RVG++ +A + I MP PD V+WG L AC H + +I
Sbjct: 337 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEI 396
Query: 484 AKIALQSSCSLNLSIP 499
A+IA ++ L + P
Sbjct: 397 AEIASEALFKLEPTNP 412
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 47/310 (15%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---- 100
+ LR +H+Q + S T LI++ + ++ A +FD + +++ ++N +
Sbjct: 92 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 151
Query: 101 ---------------------------IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTY 132
I G ++N ++ + F+ M + SV+PN +T
Sbjct: 152 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 211
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V + A+L L +GR L ++G + +V +MY + G A ++F+E
Sbjct: 212 VSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL-- 269
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
++ WN +I + G +A+ LF M K + ++V L+ + G + K
Sbjct: 270 -GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 328
Query: 249 AGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
ELF+ M E +S + MI+ + G+ ++A + M ++ + + L
Sbjct: 329 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM---PMKPDAVVWGTLL 385
Query: 304 SACAKVGALE 313
AC+ G +E
Sbjct: 386 GACSFHGNVE 395
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 263/510 (51%), Gaps = 43/510 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT +++ S + K + +H++I+ + + + T L+ + S +F
Sbjct: 226 NRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVF 285
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ ++L +N +I GLAE +++ + M R V PN++TY + + + + L
Sbjct: 286 EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALH 345
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H + K+G D V+ L MY + G + A VFD+ K+ V+ W +I
Sbjct: 346 WGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKD----VISWTAMI 401
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA-------------------SWV------------- 234
G +K G+ +A+ ++ M + V W
Sbjct: 402 GGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+L++ + G +K A ++F++M ++ +V++ AMI G++ + ++AL +F ++
Sbjct: 462 TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 521
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ G++ + T ++ L+ACA G+LE +H + F ++G ALV YAKCG+
Sbjct: 522 QEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSF 581
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
AS+VF + ++++++W A+I G A HGR + A+Q F++M G +PD F+++L+AC
Sbjct: 582 SDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSAC 641
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G ++ +F SM D+ I P+++H+ +V+LL R GQ+D+A I MP + I
Sbjct: 642 SHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRI 701
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSLNLS 497
WGAL ACR H + +A+ A +SS L+L
Sbjct: 702 WGALLGACRIHGNVPVAERAAESSLKLDLD 731
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 230/490 (46%), Gaps = 50/490 (10%)
Query: 32 THIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
T I+S + S S L R+IH Q + L ++ +++ + SI+ A +FD
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K++ + + I G A+ ++ F M + V PNR+TY V + +S + L G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H I+ +G E D V L MY + G + +VF EK + ++ WN +I G
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVF----EKLVNRDLIAWNTMIGG 302
Query: 209 CSKIGYLRKAVELF------GMMPKK---------------------------------N 229
++ GY +A E++ G+MP K +
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+ +LI + R G +K A +F++M K V+SWTAMI G +++G +AL ++ +M
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
AGV N T S L+AC+ ALE G R+H + +G LV+MY+ CG+++
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF ++D++ + AMI G A H ++A++ F ++ G +PD ++ +L AC
Sbjct: 483 ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542
Query: 410 SGQVKLALNFFDSMR-FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
SG ++ A +R +F + SV + +V+ ++ G A KM + + + W
Sbjct: 543 SGSLEWAREIHTLVRKGGFFSDTSVGN--ALVSTYAKCGSFSDASIVFEKMTKR-NVISW 599
Query: 469 GALFCACRTH 478
A+ H
Sbjct: 600 NAIIGGSAQH 609
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 208/472 (44%), Gaps = 47/472 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH--FTPKNLHIFNVLIRGLA 105
RQ+H II H LI+ SI+ A ++ + + +H +N ++ G
Sbjct: 43 RQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYI 102
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + + + M + + P+R T S S L GR +H +++G+ +D
Sbjct: 103 QYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVK 162
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V + +MY + G A +VFD+ +K SV+ W + I G + G A E+F M
Sbjct: 163 VANCILNMYAKCGSIEEAREVFDKMEKK----SVVSWTITIGGYADCGRSETAFEIFQKM 218
Query: 226 PKKNVA----SWVSLIDGF-----------------------------------MRKGDL 246
++ V +++S+++ F + G
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSY 278
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
K ++FE++ + +++W MI G ++ G E+A ++ QM GV N T V L+AC
Sbjct: 279 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNAC 338
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
AL G +H+ ++ F + AL+ MY++CG+I+ A LVF + KD+++WT
Sbjct: 339 VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI GLA G +A+ +++M +G EP+ + +IL AC ++ + +
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV-VE 457
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ +VN+ S G V A ++M + D V + A+ H
Sbjct: 458 AGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR-DIVAYNAMIGGYAAH 508
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 242/465 (52%), Gaps = 42/465 (9%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
E I+ +H + QL QIHA I+ H+L S++I + IS + YA +F
Sbjct: 8 AERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQT 67
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
NL +FN +I+G + ++ + F M + P+ T+ + KS + + +G+
Sbjct: 68 QNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGK 127
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
G+H +++ G E + +R+ + D+Y G+ A KVFDE
Sbjct: 128 GVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDE-------------------- 167
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
M ++V W +I GF + GD++ LF QM ++ VVSW +MI
Sbjct: 168 ---------------MLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIA 212
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN---- 325
G Q+G +AL +F +M D G +D TVV+ L CA++GA++ G +H+Y +
Sbjct: 213 GLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLR 272
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
DF ++G +LVD Y KCG +E A VF E +K++++W AMI GL +G+ E F
Sbjct: 273 DFI---SVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLF 329
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
++M+ G P+ F+ +L+ C ++G V+ N F SM D+ +EP ++H +V+LL+R
Sbjct: 330 EEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLAR 389
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
G +++A + + MP P+ V+WG+L A RT D K A+ A++
Sbjct: 390 NGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHAECAVKE 434
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 125/297 (42%), Gaps = 22/297 (7%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I+ +F +++ +N +I GL ++ + F M P+ T +
Sbjct: 188 DIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILP 247
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFKVFDETPEKNK 195
A L + +G +H S + D F+ V L D Y + G A++VF+E P+KN
Sbjct: 248 VCARLGAVDVGEWIHSYAESSRLLRD-FISVGNSLVDFYCKCGILETAWRVFNEMPQKN- 305
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGE 251
V+ WN +I+G + G +LF M K V A++V ++ G +++
Sbjct: 306 ---VVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRN 362
Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
LF M E + + M++ ++NG E+A + M +R N S LSA
Sbjct: 363 LFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTM---PMRPNAVLWGSLLSAY 419
Query: 307 AKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+G ++ A V I + + L ++YA+ G + V KEK++
Sbjct: 420 RTIGDVKHAECAVKELIELEPWNSGNYV--LLSNVYAEDGKWDEVEKVRALMKEKNI 474
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/543 (27%), Positives = 256/543 (47%), Gaps = 84/543 (15%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---- 80
P+ + H++ L+ S + L QIHA +++H S + +QLI+S + D
Sbjct: 4 PAAVVASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGG 63
Query: 81 --YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+A +FD + ++N L+R + + Q + +L+ + PN T PFV K+
Sbjct: 64 LCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKA 123
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
++ + H ++VK G FV L + G R + + F E ++N
Sbjct: 124 CTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRN---- 179
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV------------------------ 234
V+ WN +I G ++ G + +A LFG M + + + V
Sbjct: 180 VVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHC 239
Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQM----------------------- 256
+L+D + + GDL A F+ M
Sbjct: 240 HMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDA 299
Query: 257 --------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
PE+ +VSW AMI+ + Q G + L ++ +M G+ ++FT+ LSAC +
Sbjct: 300 VRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQ 359
Query: 309 VGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
G L +G +H Y+ + ND G+ + +L+DMYA+CG ++ A +F E K++++W
Sbjct: 360 NGDLASGKMIHCYVRDNFNDPGV--TLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWN 417
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+I LA+HGR ++ + +F+ M+ PD F+ +L+AC + G ++ +F++M
Sbjct: 418 VIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARV 477
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y +EP V+H+ +V+LL R G + KA+N I M PD V+WGAL ACR H + +I K+
Sbjct: 478 YNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKL 537
Query: 487 ALQ 489
++
Sbjct: 538 VIK 540
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 13/281 (4%)
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+AS+ +L G R G L A LF+++PE + ++ +S + ++AL + +L
Sbjct: 49 IASYCTLSAGD-RDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQ 107
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
G+ N+FT+ L AC V A+E + H + F + + AL+ +A G++
Sbjct: 108 RGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRD 167
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
+ FGE ++++++W MI G A G +A F +M + G D +++L AC
Sbjct: 168 SRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSS 227
Query: 410 SGQVKLALNFFDSM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
G +++ M R D + ++++ + G + A + MP +
Sbjct: 228 EGNLEVGRLVHCHMLVSGSRVDRILG------NALLDMYGKCGDLWMAHRCFDMMP-IKN 280
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
V W ++ CA H + + N+ AM C
Sbjct: 281 VVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISC 321
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/538 (29%), Positives = 256/538 (47%), Gaps = 80/538 (14%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
A T I +++ +N +TH +I+ N+ + L ++ + S+R + IS
Sbjct: 24 AKLTTILNNYLTANQAKQTHACIIINGFNNLEPL-------LVRQILLSARNNPRRISQ- 75
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
Y SI H + + IR ++ F+ + +V M R + P+
Sbjct: 76 -------YVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVS 128
Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
++ A + G +H K G +V+ L D+Y +LG A KVFDE EK
Sbjct: 129 SALRAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEK 188
Query: 194 N---------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
N + V+ WN +I+G +KIG + +A LF MP
Sbjct: 189 NVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMP 248
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING---------------- 270
+KN +SW +LI G++ GD+K A F+ MPE+ VSW MI G
Sbjct: 249 EKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQ 308
Query: 271 ---------------FSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALE 313
F+QN + KAL +F +ML A ++ + T+ S +SAC+++G L
Sbjct: 309 IAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLR 368
Query: 314 AGVRVHNYISCNDFG--LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ +Y+ ND G + + TAL+D+YAKCG+++ A +F +KD++ ++AMI G
Sbjct: 369 FASWIESYV--NDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISG 426
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
I+G+ AI+ F M+ + P+ F +LTAC ++G VK FF SM+ D+ + P
Sbjct: 427 CGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMK-DHGLVP 485
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
S H+ ++V+LL R G++ A I MP P +WGAL AC H + ++ +IA Q
Sbjct: 486 STDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQ 543
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 234/459 (50%), Gaps = 37/459 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E ++ L+H N+ +L +IHA ++ H L S+ + IS + DYA +F H
Sbjct: 4 ERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQ 63
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ +FN +I+ + +S F M + + TY + KS +SLS L G+
Sbjct: 64 NPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKC 123
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H ++++G +R+ + ++Y G+ A KVFDE
Sbjct: 124 VHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDE--------------------- 162
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
M ++NV W +I GF GD+++ LF+QM E+ +VSW +MI+
Sbjct: 163 --------------MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISS 208
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGL 329
S+ G +AL +F +M+D G ++ TVV+ L A +G L+ G +H+ S F
Sbjct: 209 LSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKD 268
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+G ALVD Y K G++EAA+ +F + + +++++W +I G A++G+ E I F M+
Sbjct: 269 FITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMI 328
Query: 390 YSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ FL +L C Y+GQV+ F M + +E +H+ +V+L+SR G+
Sbjct: 329 EEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGR 388
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ +A F+ MP + +WG+L ACR+H D K+A++A
Sbjct: 389 ITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVA 427
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 4/325 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A +VFD PEKN + WN +I G + + +A ELF
Sbjct: 184 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF 239
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +NV+SW ++I G+ + GD+ +A F++MP++ +SW A+I G++Q+G E+AL
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 299
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G R N T S LS CA++ ALE G +VH + +G AL+ MY
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGNI+ A +VF +EK++++W MI G A HG ++A+ F+ M +G PD +
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V +F SM DY I + KH+T +++LL R G++D A N + MP
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 479
Query: 463 PDFVIWGALFCACRTHKDTKIAKIA 487
PD WGAL A R H +T++ + A
Sbjct: 480 PDAATWGALLGASRIHGNTELGEKA 504
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
YVQ G+ A ++F E ++ WN ++ G K L A +F MP+++ SW
Sbjct: 102 YVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW 157
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++I G+ + G+L +A LFE+ P + V +WTAM++G+ QNG ++A +F D
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF----DGMPE 213
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N + + ++ + ++ + + C + + ++ YA+ G+I A
Sbjct: 214 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV----SSWNTMITGYAQNGDIAQARNF 269
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
F ++D ++W A+I G A G E+A+ F +M G + + F + L+ C
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 323
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
L + + E+D F+ H V+ R A +FD+ PE++ V+ WN +++G ++ G
Sbjct: 21 LQLHASPEFD-FLERHDLRGCVRYRNLRAARLLFDQMPERD----VVSWNAMLSGYAQNG 75
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
Y+++A E+F MP KN SW ++ +++ G ++ A LFE + ++SW M+ G+ +
Sbjct: 76 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 135
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
A +F +M + ++ + + +S A+ G L R+ D
Sbjct: 136 RNRLVDARGIFDRMPE----RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FT 187
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
TA+V Y + G ++ A VF EK+ ++W A+I G R +QA + F+ M
Sbjct: 188 WTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV 247
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+ + ++T +G + A NFFD M
Sbjct: 248 ----SSWNTMITGYAQNGDIAQARNFFDRM 273
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 52/305 (17%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+++ II+ Q R++ + N+ + +I+ + + I A + F
Sbjct: 215 NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS----WNTMITGYAQNGDIAQARNFF 270
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D ++ + +I G A++ + + + FV M R R NR T+ + A ++ L
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LG+ +H +VK+G+E +V L MY + G A+ VF+ EK V+ WN +I
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK----EVVSWNTMI 386
Query: 207 NGCSKIGYLRKAVELF------GMMPKK-------------------------------- 228
G ++ G+ ++A+ LF G++P
Sbjct: 387 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446
Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE---AEKALA 282
N + +ID R G L A L + MP E +W A++ +G EKA
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506
Query: 283 MFFQM 287
M F+M
Sbjct: 507 MIFEM 511
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 10/230 (4%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H +++ L + + L+ +ID A +F+ K + +N +I G A +
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFV 166
+ + F M + + P+ +T V + + L+ G + + G+ ++
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWNVLINGCSKIGYLRKAVELFGM 224
+ D+ + G+ A + P + + + LL I+G +++G KA ++
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAKMIFE 510
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
M N +V L + + G G + +M ++GV SW + N
Sbjct: 511 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 243/491 (49%), Gaps = 50/491 (10%)
Query: 41 SNSTKQLRQIHAQIILHNLFASS------RITTQLISSASLHKSIDYALSIFDHFTPKNL 94
S S LR +H LH S + L++ ++ +D A +FD T +++
Sbjct: 51 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 110
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+N +I G N + +S FV ML + + T V A L+SLGR +H +
Sbjct: 111 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 170
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VK+ + L DMY + G A VF E ++ SV+ + +I G ++ G
Sbjct: 171 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGL 226
Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
+AV+LF G+ P K V W+ +
Sbjct: 227 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 286
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
L+D + + G +++A +F +M K ++SW +I G+S+N A +AL++F +L+
Sbjct: 287 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 346
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
++ TV L ACA + A + G +H YI N + + +LVDMYAKCG + A ++F
Sbjct: 347 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 406
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+ KDL++WT MI G +HG ++AI F +M +G E D F+++L AC +SG V
Sbjct: 407 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 466
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
FF+ MR + IEP+V+H+ +V++L+R G + KA FI MP PD IWGAL C
Sbjct: 467 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526
Query: 475 CRTHKDTKIAK 485
CR H D K+A+
Sbjct: 527 CRIHHDVKLAE 537
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 205/441 (46%), Gaps = 62/441 (14%)
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
FD + +N+L+ LA++ F I F M+ V + T+ VSKS +SL +
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G LH I+KSG V L Y++ + A KVFDE E++ V+ WN +
Sbjct: 61 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSI 116
Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVS-------------------------- 235
ING G K + +F M + ++A+ VS
Sbjct: 117 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 176
Query: 236 ---------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
L+D + + GDL A +F +M ++ VVS+T+MI G+++ G A +A+ +F +
Sbjct: 177 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 236
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M + G+ + +TV + L+ CA+ L+ G RVH +I ND G + AL+DMYAKCG+
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 296
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILT 405
++ A LVF E + KD+++W +I G + + +A+ F ++ PD +L
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 356
Query: 406 ACWYSGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
AC +L+ FD MR YF + V + +V++ ++ G + A +
Sbjct: 357 AC-------ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCGALLLAHMLFD 407
Query: 458 KMPETPDFVIWGALFCACRTH 478
+ + D V W + H
Sbjct: 408 DIA-SKDLVSWTVMIAGYGMH 427
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 246/507 (48%), Gaps = 50/507 (9%)
Query: 30 TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
T+ I+ L+ + + L +QIH +I +++ I ++S S + ++ A F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAF 290
Query: 87 DHFTPKNLHIFNVLIRGLAENS-----------------------------------HFQ 111
D N +N +I A N ++
Sbjct: 291 DSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYE 350
Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
+ +++F + +P+ + ++V L +LG+ +H I++S +EYD +V L
Sbjct: 351 NVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLV 410
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----K 227
D Y++ A VF T KN + WN LI+G + G A +L M K
Sbjct: 411 DKYIKNDCLDKAEVVFHHTKNKN----ICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIK 466
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAM 283
++ +W SL+ G+ G ++A + ++ G VVSWTAMI+G QN AL
Sbjct: 467 PDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQF 526
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F QM + V+ N T+ + L ACA L+ G +H + + F I TAL+DMY K
Sbjct: 527 FSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGK 586
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G ++ A VF KEK L W M+ G AI+G E+ F +M +G PD F A+
Sbjct: 587 GGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTAL 646
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+ C SG V +FDSM+ DY I P+++H++ +V+LL + G +D+AL+FI+ +P+
Sbjct: 647 LSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKA 706
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQS 490
D IWGA+ ACR HKD KIA+IA ++
Sbjct: 707 DASIWGAVLAACRLHKDIKIAEIAARN 733
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/444 (20%), Positives = 180/444 (40%), Gaps = 43/444 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
++HA ++ ++ LI+ + ID A +FD + ++N ++ +
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSE 211
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
++ + F M S + T + ++ L L+ G+ +H +++ G + +
Sbjct: 212 KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
+ MY + + A FD T + N
Sbjct: 272 SIVSMYSRNNRLELARVAFDSTEDHNS--------------------------------- 298
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMF 284
ASW S+I + L A +L ++M GV ++W ++++G G E L F
Sbjct: 299 --ASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF 356
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ AG + + ++ SAL A +G G +H YI + + T+LVD Y K
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKN 416
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
++ A +VF TK K++ W ++I G G ++ A + +M G +PD + +++
Sbjct: 417 DCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLV 476
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-- 462
+ SG+ + AL + ++ + P+V T +++ + AL F ++M E
Sbjct: 477 SGYSMSGRSEEALAVINRIK-SLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENV 535
Query: 463 -PDFVIWGALFCACRTHKDTKIAK 485
P+ L AC KI +
Sbjct: 536 KPNSTTICTLLRACAGSSLLKIGE 559
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 8/253 (3%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
G + VF E +K V++ C + L +E+ + K+ +V
Sbjct: 110 GDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLS 169
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+LI+ + + + A ++F++ P + W ++ ++ + E AL +F +M A +
Sbjct: 170 CALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAK 229
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAAS 351
A D T+V L AC K+ AL G ++H Y+ FG +I ++V MY++ +E A
Sbjct: 230 ATDGTIVKLLQACGKLRALNEGKQIHGYVI--RFGRVSNTSICNSIVSMYSRNNRLELAR 287
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+ F T++ + +W ++I A++ A ++M SG +PD + ++L+ G
Sbjct: 288 VAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQG 347
Query: 412 QVKLALNFFDSMR 424
+ L F S++
Sbjct: 348 SYENVLTNFRSLQ 360
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 5/187 (2%)
Query: 225 MPKKN--VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKAL 281
MPKK V S++ +++ GD + A ++F + + W + I F+ G++ + L
Sbjct: 57 MPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEIL 116
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
A+F ++ D GV+ + + L C + L G+ VH + F + + AL+++Y
Sbjct: 117 AVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLY 176
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVF 400
K I+ A+ VF ET ++ W ++ ++E A++ F++M S DGT+
Sbjct: 177 EKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTI- 235
Query: 401 LAILTAC 407
+ +L AC
Sbjct: 236 VKLLQAC 242
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 236/463 (50%), Gaps = 38/463 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSIFDHFTPKN 93
L+ + Q++QI + + ++IS +L S+ +A +F ++
Sbjct: 16 LLDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRS 75
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
I+N +IR AE + + I F ML + PN TY F+ K+ L+ L LG HC
Sbjct: 76 TFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHC 135
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+K G E+ FV+ L M+ G A K+FD + ++ V+ W LING + G
Sbjct: 136 QSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRD----VITWTALINGYVRAG 191
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ ELF MP++N SW ++I G++R G ++A ELF M +I+GF
Sbjct: 192 QVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAM----------LISGFWP 241
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
N AG +V A++ACA +GAL+ G +H YI N L +
Sbjct: 242 N--------------HAG-------IVCAINACASLGALDQGRWIHCYIKRNRMDLDRVM 280
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL+DMYAKCG IE A +FGE + +D+ +T +I GLA HG+ A++ F++M G
Sbjct: 281 GAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGV 340
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ F+++L AC G V L F++M Y EP V+H+ +V+LL R G++++A
Sbjct: 341 VPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAK 400
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
+ +MP PD + GAL A R + D ++ + ++S L+L
Sbjct: 401 KLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSL 443
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
I+ S + Q R IH I + + + LI + I+ A SIF +++
Sbjct: 250 INACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDV 309
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
H++ LI GLA + + + F M V PN +T+ V + + + L+ +GL
Sbjct: 310 HVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVD--KGLRIF 367
Query: 155 IVKSGVEYDAFVRVH---LADMYVQLGKTRGAFKVFDETPEKNKS 196
S + D H L D+ + GK A K+ E P K S
Sbjct: 368 ENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDS 412
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/533 (29%), Positives = 251/533 (47%), Gaps = 47/533 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T T ++ + K+ +++H ++ +++ + LI++ ++ A ++F
Sbjct: 194 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 253
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D + ++ +N +I G N + + F+ ML L V + T V + A++ LS
Sbjct: 254 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLS 313
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LGR LH VK+ + L DMY + G GA +VF K +++ W +I
Sbjct: 314 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF----VKMGDTTIVSWTSII 369
Query: 207 NGCSKIGYLRKAVELFGMMPKK--------------------------NVASWV------ 234
+ G A+ LF M K +V S+V
Sbjct: 370 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 429
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+LI+ + + G +++A +F ++P K +VSW MI G+SQN +AL +F M
Sbjct: 430 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM 489
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ +D T+ L ACA + AL+ G +H +I + + ALVDMYAKCG +
Sbjct: 490 -QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 548
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A L+F +KDL++WT MI G +HG +AI F +M +G EPD + F AIL AC
Sbjct: 549 VLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNAC 608
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG + FF+SMR + +EP ++H+ VV+LL+R+G + KA FI MP PD I
Sbjct: 609 SHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 668
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
WG L CR H D K+A+ + L P Y + W E
Sbjct: 669 WGVLLSGCRIHHDVKLAEKVAEHIFELE---PDNTRYYVVLANVYAEAEKWEE 718
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 190/413 (46%), Gaps = 44/413 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L S + +++H+ II + + + +L+ + IFD
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N+L+ A+ +F+ +S F M +L V N T+ V K A+L + + +H
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 219
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G + V L Y + G A +FDE E + V+ WN +INGC G
Sbjct: 220 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD----VVSWNSMINGCVVNG 275
Query: 214 YLRKAVELFGMM----PKKNVASWVS---------------------------------- 235
+ +E+F M + ++ + VS
Sbjct: 276 FSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN 335
Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
L+D + + G+L A E+F +M + +VSWT++I + + G A+ +F +M GVR
Sbjct: 336 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP 395
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ +TV S + ACA +L+ G VH+Y+ N G + AL++MYAKCG++E A LVF
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ KD+++W MI G + + +A++ F M +PD +L AC
Sbjct: 456 SKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPAC 507
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 53/384 (13%)
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+Y V + A L G+ +H +I+ +G+ D + L MYV G K+FD
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFD-- 153
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------------------- 227
K ++ V LWN+L++ +KIG R++V LF M K
Sbjct: 154 --KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 211
Query: 228 ---KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
K V +V SLI + + G ++ A LF+++ E VVSW +MING
Sbjct: 212 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
NG + L +F QML GV + T+VS L ACA +G L G +H + F +
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEV 331
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
L+DMY+KCGN+ A+ VF + + +++WT++I G Y AI F +M
Sbjct: 332 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSK 391
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVG 447
G PD +I+ AC S + + Y I+ + + V +N+ ++ G
Sbjct: 392 GVRPDIYTVTSIVHACACSSSLDKGRDV-----HSYVIKNGMGSNLPVTNALINMYAKCG 446
Query: 448 QVDKALNFINKMPETPDFVIWGAL 471
V++A +K+P D V W +
Sbjct: 447 SVEEARLVFSKIP-VKDIVSWNTM 469
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/461 (31%), Positives = 239/461 (51%), Gaps = 40/461 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDHFTP 91
+IS + + Q++QIH ++ L S I T+LI + + L +D Y + +
Sbjct: 53 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQF 112
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N ++ +IRG F I+ + M + + P T+ + K+ S+ L+LGR
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H Q + RG V+ + N +I+ K
Sbjct: 173 H----------------------AQTFRLRGFCFVY-------------VGNTMIDMYVK 197
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
G + A ++F MP+++V SW LI + R G+++ A +LFE +P K +V+WTAM+ GF
Sbjct: 198 CGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGF 257
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+QN + ++AL F +M +G+RA++ TV +SACA++GA + R + +
Sbjct: 258 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 317
Query: 332 --AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
IG+AL+DMY+KCGN+E A VF K++ ++++MI GLA HGR ++A+ F M+
Sbjct: 318 HVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMV 377
Query: 390 -YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+ F+ LTAC +SG V F SM + +EP+ H+T +V+LL R G+
Sbjct: 378 TQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGR 437
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +AL I M P +WGAL ACR H + IA+IA +
Sbjct: 438 LQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAE 478
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/503 (29%), Positives = 253/503 (50%), Gaps = 47/503 (9%)
Query: 35 ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+SL+ + N + L Q +HA++ + T ++S + S++ AL +FD
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N+ + +I G A++ F M+ + PNR+T+ + + +S S L G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
I+++G D VR L MY + G + A +VF++ ++N V+ WN +I +
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN----VVAWNAMITAYVQ 491
Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
A+ F + K+ + WV
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+L+ F+ GDL A LF MP++ +VSW +I GF Q+G+ + A F M ++G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ + T L+ACA AL G R+H I+ F +GT L+ MY KCG+IE A
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF + +K++ +WT+MI G A HGR ++A++ F +M G +PD F+ L+AC ++G
Sbjct: 672 VFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ L+ F SM+ ++ IEP ++H+ +V+L R G +++A+ FI KM PD +WGAL
Sbjct: 732 IEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALL 790
Query: 473 CACRTHKDTKIAKIALQSSCSLN 495
AC+ H + ++A+ A Q L+
Sbjct: 791 GACQVHLNVELAEKAAQKKLELD 813
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 45/442 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A IFD K+++ +N+L+ G ++ ++ M++ SV+P++ T+ + + A
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ GR L+ LI+K+G + D FV L +M+++ G A KVFD P ++ ++
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD----LVT 279
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG------------------ 239
W +I G ++ G ++A LF M ++ V ++VSL+
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339
Query: 240 -----------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+ + G ++ A E+F+ + + VVSWTAMI GF+Q+G ++A
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
F +M+++G+ N T +S L AC+ AL+ G ++ ++I +G + TAL+ MYA
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+++ A VF + +++++ W AMI H +Y+ A+ F+ ++ G +P+ + F +
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL C S ++L + + +E + +V++ G + A N N MP+
Sbjct: 520 ILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578
Query: 463 PDFVIWGALFCACRTHKDTKIA 484
D V W + H ++A
Sbjct: 579 -DLVSWNTIIAGFVQHGKNQVA 599
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 51/429 (11%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+S +P N +T I+ S ++ K+ +QI II + R+ T L+S + S
Sbjct: 405 IESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +F+ + +N+ +N +I ++ + + ++ F +L+ ++PN T+ +
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
S L LG+ +H LI+K+G+E D V L M+V G A +F++ P+++
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD---- 579
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM------PKK------------------------ 228
++ WN +I G + G + A + F MM P K
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 229 ---------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+V LI + + G ++ A ++F ++P+K V SWT+MI G++Q+G ++
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
AL +F+QM GV+ + T V ALSACA G +E G +H++ S +F ++ + +
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCM 757
Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
VD++ + G + EA + E D W A++ +H E A + +K + +P+
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLE--LDPN 815
Query: 397 GTVFLAILT 405
IL+
Sbjct: 816 DNGVFVILS 824
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/465 (23%), Positives = 201/465 (43%), Gaps = 50/465 (10%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLH 95
N+ R + L+NL + T L +L I A +FD+ ++L
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ +I GLA + F+ + F M V+P+++ + + ++ L G+ +H +
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ G + + +V + MY + G A +VFD +N V+ W +I G ++ G +
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRI 394
Query: 216 RKAVELFGMMPKKNVAS---------------------------------------WVSL 236
+A F M + + +L
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G LK A +FE++ ++ VV+W AMI + Q+ + + ALA F +L G++ N
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T S L+ C +LE G VH I + ALV M+ CG++ +A +F +
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
++DL++W +I G HG+ + A YFK M SG +PD F +L AC S +
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC-ASPEALTE 633
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
++ + + V T ++++ ++ G ++ A +K+P+
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 37/313 (11%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMP 257
++ L+ C K L ++ + K V W +LI+ + + G+ A ++F+ M
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMR 172
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
EK V SW ++ G+ Q+G E+A + QM+ V+ + T VS L+ACA ++ G
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
++N I + +GTAL++M+ KCG+I A+ VF +DL+TWT+MI GLA HGR
Sbjct: 233 LYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR 292
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTAC--------------------W----YSGQV 413
++QA F++M G +PD F+++L AC W Y G
Sbjct: 293 FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTA 352
Query: 414 KLAL-----NFFDSMR-FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PD 464
L++ + D++ FD +V T ++ ++ G++D+A F NKM E+ P+
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 465 FVIWGALFCACRT 477
V + ++ AC +
Sbjct: 413 RVTFMSILGACSS 425
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/503 (29%), Positives = 253/503 (50%), Gaps = 47/503 (9%)
Query: 35 ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+SL+ + N + L Q +HA++ + T ++S + S++ AL +FD
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N+ + +I G A++ F M+ + PNR+T+ + + +S S L G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
I+++G D VR L MY + G + A +VF++ ++N V+ WN +I +
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN----VVAWNAMITAYVQ 491
Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
A+ F + K+ + WV
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+L+ F+ GDL A LF MP++ +VSW +I GF Q+G+ + A F M ++G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ + T L+ACA AL G R+H I+ F +GT L+ MY KCG+IE A
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF + +K++ +WT+MI G A HGR ++A++ F +M G +PD F+ L+AC ++G
Sbjct: 672 VFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ L+ F SM+ ++ IEP ++H+ +V+L R G +++A+ FI KM PD +WGAL
Sbjct: 732 IEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALL 790
Query: 473 CACRTHKDTKIAKIALQSSCSLN 495
AC+ H + ++A+ A Q L+
Sbjct: 791 GACQVHLNVELAEKAAQKKLELD 813
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 45/442 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A IFD K+++ +N+L+ G ++ ++ M++ SV+P++ T+ + + A
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ GR L+ LI+K+G + D FV L +M+++ G A KVFD P ++ ++
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD----LVT 279
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG------------------ 239
W +I G ++ G ++A LF M ++ V ++VSL+
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339
Query: 240 -----------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+ + G ++ A E+F+ + + VVSWTAMI GF+Q+G ++A
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
F +M+++G+ N T +S L AC+ AL+ G ++ ++I +G + TAL+ MYA
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+++ A VF + +++++ W AMI H +Y+ A+ F+ ++ G +P+ + F +
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL C S ++L + + +E + +V++ G + A N N MP+
Sbjct: 520 ILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578
Query: 463 PDFVIWGALFCACRTHKDTKIA 484
D V W + H ++A
Sbjct: 579 -DLVSWNTIIAGFVQHGKNQVA 599
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 51/429 (11%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+S +P N +T I+ S ++ K+ +QI II + R+ T L+S + S
Sbjct: 405 IESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +F+ + +N+ +N +I ++ + + ++ F +L+ ++PN T+ +
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
S L LG+ +H LI+K+G+E D V L M+V G A +F++ P+++
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD---- 579
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM------PKK------------------------ 228
++ WN +I G + G + A + F MM P K
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 229 ---------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+V LI + + G ++ A ++F ++P+K V SWT+MI G++Q+G ++
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
AL +F+QM GV+ + T V ALSACA G +E G +H++ S +F ++ + +
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCM 757
Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
VD++ + G + EA + E D W A++ +H E A + +K + +P+
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLE--LDPN 815
Query: 397 GTVFLAILT 405
IL+
Sbjct: 816 DNGVFVILS 824
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/488 (23%), Positives = 208/488 (42%), Gaps = 51/488 (10%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLH 95
N+ R + L+NL + T L +L I A +FD+ ++L
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ +I GLA + F+ + F M V+P+++ + + ++ L G+ +H +
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ G + + +V + MY + G A +VFD +N V+ W +I G ++ G +
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRI 394
Query: 216 RKAVELFGMMPKKNVAS---------------------------------------WVSL 236
+A F M + + +L
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G LK A +FE++ ++ VV+W AMI + Q+ + + ALA F +L G++ N
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T S L+ C +LE G VH I + ALV M+ CG++ +A +F +
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
++DL++W +I G HG+ + A YFK M SG +PD F +L AC S +
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC-ASPEALTE 633
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
++ + + V T ++++ ++ G ++ A +K+P+ + W ++
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK-KNVYSWTSMIAGYA 692
Query: 477 THKDTKIA 484
H K A
Sbjct: 693 QHGRGKEA 700
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 37/313 (11%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMP 257
++ L+ C K L ++ + K V + +LI+ + + G+ A ++F+ M
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMR 172
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
EK V SW ++ G+ Q+G E+A + QM+ V+ + T VS L+ACA ++ G
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
++N I + +GTAL++M+ KCG+I A+ VF +DL+TWT+MI GLA HGR
Sbjct: 233 LYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR 292
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTAC--------------------W----YSGQV 413
++QA F++M G +PD F+++L AC W Y G
Sbjct: 293 FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTA 352
Query: 414 KLAL-----NFFDSMR-FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PD 464
L++ + D++ FD +V T ++ ++ G++D+A F NKM E+ P+
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 465 FVIWGALFCACRT 477
V + ++ AC +
Sbjct: 413 RVTFMSILGACSS 425
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 242/454 (53%), Gaps = 42/454 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K + +HA+ I + + I T L+ + ++ + +FD+ +N +N +I G
Sbjct: 111 KHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGY 170
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N +S + + ++S+R A
Sbjct: 171 LGNGDSKSAV---LLFEKMSIRT------------------------------------A 191
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+ + D + + G T A + FD+ P + ++ V+ W V+++G ++ + A E+F
Sbjct: 192 VTWIEMIDGFARSGDTETARRFFDDVPSELRN--VVTWTVMVDGYARNAEMEAAREVFEG 249
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP++N +W S+I G+ +KG++K+A +F+++P + +V+W ++I+G++QNG +E+AL F
Sbjct: 250 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 309
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M G ++ T+ S LSAC+++G L+AG ++H+ ++ L + LVDMYAKC
Sbjct: 310 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 369
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++ A L+F ++ W +MI G AIHG+ ++A+++F +M S PD FL++L
Sbjct: 370 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC + G V L F M Y + +KH+ +++LL R G++ +A + I +MP P+
Sbjct: 430 SACAHGGFVNAGLEIFSRME-KYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPN 488
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
V+WGAL ACR H D ++A ++ ++ +I
Sbjct: 489 DVVWGALLGACRVHLDMEMADRVVEEIVKVDSNI 522
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 135/277 (48%), Gaps = 45/277 (16%)
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
P V K+ ASLS++ G+ LH +K+GV++D + L MY + G + KVFD PE
Sbjct: 98 PLVLKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPE 157
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+N + WN +I G G + AV LF M + +W+ +IDGF R GD + A
Sbjct: 158 RN----AVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRF 213
Query: 253 FEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
F+ +P + VV+WT M++G+++N E E A +F
Sbjct: 214 FDDVPSELRNVVTWTVMVDGYARNAEMEAAREVF-------------------------- 247
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
G+ N+ + ++++ Y K GN++ A +F ++L+ W ++I
Sbjct: 248 ---EGMPQRNFFAW----------SSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLIS 294
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
G A +G E+A++ F KM G EPD ++L+AC
Sbjct: 295 GYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSAC 331
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 19/288 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T ++ + + R++ + N FA S +IS ++ A SIF
Sbjct: 223 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWS----SMISGYCKKGNVKEARSIF 278
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +NL +N LI G A+N + + F M P+ +T V + + L LL
Sbjct: 279 DRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLD 338
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++ G++ + FV L DMY + G A +F+ +N++ WN +I
Sbjct: 339 AGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRA----CWNSMI 394
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+G + G ++A+E FG M + +++S++ G + E+F +M + G+
Sbjct: 395 SGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLT 454
Query: 263 S----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ + +I+ + G ++A + +M V+ ND + L AC
Sbjct: 455 TGIKHYGCLIDLLGRAGRIKEAYDLIKRMP---VKPNDVVWGALLGAC 499
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 12/219 (5%)
Query: 257 PEKGVVS---WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
P KG S W +I + G +AL ++ + GV + L ACA + ++
Sbjct: 53 PGKGTPSLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPL-VLKACASLSIVK 111
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G +H N IGT+LV MYAKCGN+ + VF E++ +TW AMI G
Sbjct: 112 HGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYL 171
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+G + A+ F+KM ++ ++ SG + A FFD + + +V
Sbjct: 172 GNGDSKSAVLLFEKMSIR----TAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNV 224
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
TV+V+ +R +++ A MP+ +F W ++
Sbjct: 225 VTWTVMVDGYARNAEMEAAREVFEGMPQR-NFFAWSSMI 262
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 259/523 (49%), Gaps = 59/523 (11%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISS 72
+T I+S +P N T I+ + +S K L ++IH+ ++++ S T LI+
Sbjct: 25 STAIQSFQQPYNLTT---CIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 73 ASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S +++ALSIF T + N+ FN +I G N + + M V P++ T
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFT 141
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+P K A L +L + + +H L+ K G+E D F+ L + Y++ G A F+E P
Sbjct: 142 FPCAIK--ACLDVLEIKK-IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 198
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK----------------- 228
++ V+LWN ++NG ++IG +E F M P +
Sbjct: 199 IRD----VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254
Query: 229 ----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
VA SLID + + ++ A E+FE M EK + SW ++++
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHE 314
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q G+ + L + +ML AG++ + TV + L AC+ + AL G +H Y+ + G G
Sbjct: 315 QCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 374
Query: 333 ------IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ A++DMYAKCG++ A LVF KD+ +W MI G +HG +A++ F
Sbjct: 375 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFS 434
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M +PD F+ +L+AC ++G V NF M+ Y + P+++H+T V+++L R
Sbjct: 435 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRA 494
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
GQ+D+A MP + V+W AL ACR HK +A++A Q
Sbjct: 495 GQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 537
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 246/500 (49%), Gaps = 53/500 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + L+ S QLRQI AQ++LH S LI A +Y+ +F
Sbjct: 37 ERDFLFLLKKCISVNQLRQIQAQMLLH----SVEKPNFLIPKAVELGDFNYSSFLFSVTE 92
Query: 91 PKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N + FN +IRGL N H ++ +S + M ++P++ TY FV + A L + +G
Sbjct: 93 EPNHYSFNYMIRGLTNTWNDH-EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVG 151
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R +H + K G+E D + L MY + G+ A K+FDE E++ + WN +I+G
Sbjct: 152 RSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERD----TVSWNSMISG 207
Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVS----------------------------- 235
S+ GY + A++LF M ++ + + VS
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267
Query: 236 ------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
LI + + GDL A +F QM +K V+WTAMI +SQNG++ +A +FF+M
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 327
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
GV + T+ + LSAC VGALE G ++ + S + T LVDMY KCG +E
Sbjct: 328 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEE 387
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF K+ TW AMI A G ++A+ F +M P F+ +L+AC +
Sbjct: 388 ALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVH 444
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V +F M + + P ++H+T +++LLSR G +D+A F+ + P PD ++
Sbjct: 445 AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLA 504
Query: 470 ALFCACRTHKDTKIAKIALQ 489
A+ AC KD I + A++
Sbjct: 505 AILGACHKRKDVAIREKAMR 524
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 221/424 (52%), Gaps = 41/424 (9%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+ID A +FD +NL ++N ++ A + ++ ML+ RP+R+T
Sbjct: 282 AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAIS 341
Query: 138 SVASLSLLSLGRGLHCLIVKSGVE-YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A L L G+ H ++++G+E +D+ V + DMY++ GK PE
Sbjct: 342 ASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV-IIDMYMKCGK-----------PEM--- 386
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
A +F +M K V SW SL GF+R GD++ A E+F Q+
Sbjct: 387 ---------------------ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI 425
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
PE+ V W MI+G Q E A+ +F +M G++A+ T++ SAC +GA E
Sbjct: 426 PERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK 485
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
VH YI N + TALVDM+A+CG+ ++A VF + E+D+ WTA I +A+ G
Sbjct: 486 WVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEG 545
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E A F +M+ G +PD +F+ +LTAC + GQV+ L+ F M D+ I P ++H+
Sbjct: 546 NGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHY 604
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
+V+LL R G + +A + I MP P+ V+WG+L ACR HK+ ++A A + +N
Sbjct: 605 GCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAE---RINE 661
Query: 497 SIPQ 500
PQ
Sbjct: 662 LAPQ 665
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/513 (26%), Positives = 232/513 (45%), Gaps = 88/513 (17%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL---HKSIDYALSIFDHF----- 89
+ + QL+Q+H QI + L T+L+++ + +S+DYA F+ F
Sbjct: 32 LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ L + N LIRG + + I +V ML L V PN T+PFV ++ G
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H +VK G+E D F++ L Y + G KVF+ E+N V+ W LI G
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERN----VVSWTSLICGY 207
Query: 210 SKIGYLRKAVELF------GMMPK--------------------KNVASWV--------- 234
++ ++AV LF G+ P + V +++
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267
Query: 235 ----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
+L+D +M+ G + A LF++ ++ +V + +++ +++ G A +ALA+ +ML
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKC---- 344
G R + T++SA+SA A++ L G H Y+ N GL+G +IG ++DMY KC
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN--GLEGWDSIGNVIIDMYMKCGKPE 385
Query: 345 ---------------------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
G++E+A VF + E++ + W MI GL
Sbjct: 386 MACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSL 445
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+E AI+ F++M G + D + I +AC Y G +LA + + I ++ +T
Sbjct: 446 FEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA-KWVHTYIEKNGIPCDMRLNT 504
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
+V++ +R G A+ NKM E D W A
Sbjct: 505 ALVDMFARCGDPQSAMQVFNKMTER-DVSAWTA 536
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 178/384 (46%), Gaps = 53/384 (13%)
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK------TRGAFKVFD 188
+++S+ L+ + LHC I K+G++ L + ++ R AF++F
Sbjct: 28 LNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK 87
Query: 189 ETPEKNKS------------------ESVLLW---------------NVLINGCSKIGYL 215
E + + E++LL+ +++GC+KI
Sbjct: 88 EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147
Query: 216 RKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ +++ G + K + V LI + G + ++FE M E+ VVSWT++I G+
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
++ ++A+++FF+M++AG+R + T+V +SACAK+ L+ G RV YI L
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ ALVDMY KCG I+AA +F E +++L+ + ++ A G +A+ +M+
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH----HTVVVNLLSRVG 447
G PD L+ ++A +L F+ + Y I ++ V++++ + G
Sbjct: 328 GPRPDRVTMLSAISA-----SAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCG 382
Query: 448 QVDKALNFINKMPETPDFVIWGAL 471
+ + A + M V W +L
Sbjct: 383 KPEMACRVFDLM-SNKTVVSWNSL 405
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 232/457 (50%), Gaps = 48/457 (10%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK-NLH 95
LI +S ST L QIHA ++ L + +L S + + +++++F H TP N+
Sbjct: 29 LIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLF-HRTPNPNVF 87
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
++ +I A F +S++ ML ++PN T + K+ L R +H
Sbjct: 88 LWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHA 143
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+K G+ +V L D Y + G A K
Sbjct: 144 IKFGLSSHLYVSTGLVDAYARGGDVASAQK------------------------------ 173
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
LF MP++++ S+ +++ + + G L +A LFE M K VV W MI+G++Q+G
Sbjct: 174 -----LFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHG 228
Query: 276 EAEKALAMFFQMLDAG-------VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+AL F +M+ VR N+ TVV+ LS+C +VGALE G VH+Y+ N
Sbjct: 229 CPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIK 288
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +GTALVDMY KCG++E A VF + KD++ W +MI G IHG ++A+Q F +M
Sbjct: 289 VNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEM 348
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G +P F+A+LTAC ++G V FDSM+ Y +EP V+H+ +VNLL R G+
Sbjct: 349 CCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGR 408
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +A + + M PD V+WG L ACR H + + +
Sbjct: 409 MQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGE 445
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/487 (29%), Positives = 240/487 (49%), Gaps = 41/487 (8%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITTQ 68
+TA +P + SS S I ++L+H+ S LRQ+HA ++ L ++
Sbjct: 12 STAGSPPL-LPSSASISAFIASDPALTLLHTRCASMAHLRQLHAALVKSGLAKDPIAASR 70
Query: 69 LIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
++ A + + YA + H N ++N +IR L++ + ++ ++ FV ML P
Sbjct: 71 AVAFCAGPGRDVSYAERLVRHHPRPNSFMWNTVIRALSDGARPEAAVALFVDMLGSPTPP 130
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
R T P + + A L G LH + +K G+ DA+VR MY +
Sbjct: 131 ERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAGDAYVRNATIAMYASCARA------- 183
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE A+ LFG P+ + + S I R G +
Sbjct: 184 DE----------------------------ALALFGQCPEFDAVACNSAIVALARAGRVD 215
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +F+ MPE+ V +W+AM++ +++ +ALA+F M GV N +VS L CA
Sbjct: 216 EARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCA 275
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD---LLT 364
+GAL+ G VH YI + + + TALVDMY KCG+++ A VF + + L +
Sbjct: 276 SLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSS 335
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +M+ GLA+HG++ +A+ F ++ G PD F+A+LTA ++G A F SM
Sbjct: 336 WNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMA 395
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ +EP ++H+ +V+ L+R G++ +A + I MP PD +WGAL CR H D ++
Sbjct: 396 TEHSVEPGIEHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWGALLSGCRLHGDAELG 455
Query: 485 KIALQSS 491
A + +
Sbjct: 456 ARAAREA 462
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/529 (28%), Positives = 252/529 (47%), Gaps = 39/529 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
++ T T ++ +S ++ +++H ++ + + + LI++ ++ A +F
Sbjct: 157 DSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF 216
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D + +++ +N +I G N ++ + F+ ML L V + T V + A++ L+
Sbjct: 217 DELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLT 276
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF------------------- 187
LGR LH VK+G L DMY + G GA +VF
Sbjct: 277 LGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHV 336
Query: 188 ------------DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
DE K + +++ C+ L K E+ + K N+ S +
Sbjct: 337 REGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLP 396
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+L++ + + G +++A +F Q+P K +VSW MI G+SQN +AL +F M
Sbjct: 397 VSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQ 455
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
++ +D T+ L ACA + ALE G +H +I + + ALVDMY KCG + A
Sbjct: 456 LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQ 515
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+F +KD++ WT MI G +HG ++AI F+KM +G EP+ + F +IL AC +SG
Sbjct: 516 QLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSG 575
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+K FDSM+ + IEP ++H+ +V+LL R G + +A FI MP PD IWGAL
Sbjct: 576 LLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGAL 635
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
CR H D ++A+ + L P+ Y + W E
Sbjct: 636 LSGCRIHHDVELAEKVAEHIFELE---PENTRYYVLLANVYAEAEKWEE 681
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 202/435 (46%), Gaps = 50/435 (11%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
IFD + ++N+L+ A+ +++ + F M L +R + T+ V K A+ +
Sbjct: 114 IFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAK 173
Query: 145 LSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ + +H ++K G Y+A V +A Y + G+ A +FDE +++ V+ WN
Sbjct: 174 VRECKRVHGYVLKLGFGSYNAVVNSLIA-AYFKCGEVESARILFDELSDRD----VVSWN 228
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV----ASWV------------------------- 234
+I+GC+ G+ R +E F M V A+ V
Sbjct: 229 SMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKA 288
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+L+D + + G+L A E+F +M E +VSWT++I + G +A+ +F
Sbjct: 289 GFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLF 348
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M G+R + + V S + ACA +L+ G VHN+I N+ G + AL++MYAKC
Sbjct: 349 DEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKC 408
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++E A+L+F + K++++W MI G + + +A+Q F M +PD +L
Sbjct: 409 GSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVL 467
Query: 405 TACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
AC ++ +R YF + V +V++ + G + A + +P+
Sbjct: 468 PACAGLAALEKGREIHGHILRKGYFSDLHVA--CALVDMYVKCGLLVLAQQLFDMIPK-K 524
Query: 464 DFVIWGALFCACRTH 478
D ++W + H
Sbjct: 525 DMILWTVMIAGYGMH 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 142/306 (46%), Gaps = 10/306 (3%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVL-LWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
+ ++G R A K+ + +SE L + ++ C+++ L + ++ +A
Sbjct: 34 FCEMGDLRNAMKLLSRS---QRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAI 90
Query: 233 ----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
L+ ++ GDL K +F+ + + W +++ +++ G +++ +F +M
Sbjct: 91 DEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ 150
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
+ G+R + +T L A + RVH Y+ FG A+ +L+ Y KCG +E
Sbjct: 151 ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVE 210
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+A ++F E ++D+++W +MI G ++G +++F +M+ G + D + +L AC
Sbjct: 211 SARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACA 270
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
G + L + V + ++++ S+ G ++ A KM ET V W
Sbjct: 271 NVGNLTLG-RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETT-IVSW 328
Query: 469 GALFCA 474
++ A
Sbjct: 329 TSIIAA 334
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 253/512 (49%), Gaps = 57/512 (11%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS------------RITTQLISSASL 75
+ T L+ + K L Q HAQ I +SS IT+ S+++
Sbjct: 415 QVIRTSCSYLLKLCRTLKHLHQFHAQFITSGRISSSLNQNSVFANVLFAITSISPSASTS 474
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ-SCISHFVFMLRLSVRPNRLTYPF 134
+ + YA S+ T + FN +IR + S FV M R SV P+ TYPF
Sbjct: 475 NVVVSYATSVLRFITNPSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPF 534
Query: 135 VSKSVASLS--LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V K+ A+ LSL + LHC ++ G+ L+D++
Sbjct: 535 VFKACAAKKNGDLSLVKTLHCQALRFGL---------LSDLFT----------------- 568
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
N LI S + + A++LF P+++V ++ LIDG ++ ++ +A EL
Sbjct: 569 ---------LNTLIRAYSLMAPIGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRAREL 619
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F+ MP + +VSW ++I G++Q + +A+++F +M+ G++ ++ +VS LSACA+ G L
Sbjct: 620 FDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDL 679
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
E G +H+Y + + T LVD YAKCG I+ A +F + +K L TW AMI GL
Sbjct: 680 EKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGL 739
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A+HG E + YF KM+ SG +PDG F+++L C +SG V A FD MR Y ++
Sbjct: 740 AMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDRE 799
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPET----PDFVIWGALFCACRTHKDTKIAKIAL 488
+KH+ + +LL R G +++A I +MP+ + W L CR H + ++A+ A
Sbjct: 800 MKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAA 859
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ +L+ P+ + ++ + W +
Sbjct: 860 KRVKALS---PEDGGVYKVMVEMYANAERWED 888
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP +N+ +S S ++ + IH LF S + T L+ + ID A+
Sbjct: 660 KP-DNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAM 718
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF + K L +N +I GLA + + + + +F M+ ++P+ +++ V +
Sbjct: 719 EIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSG 778
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
L+ R L + +S + D ++ + +AD+ + G A ++ ++ P + K E +L
Sbjct: 779 LVGEARKLFDQM-RSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKREKLL 837
Query: 201 LWNVLINGC 209
W+ L+ GC
Sbjct: 838 AWSGLLGGC 846
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/539 (29%), Positives = 261/539 (48%), Gaps = 84/539 (15%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASL 75
+ + HKP N+ T I L+ S + + QIH+++I + +TT++I SS+S
Sbjct: 60 LNTXHKPWNSTHPTLI--LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSH 117
Query: 76 HKSIDYALSIF--DHFTPK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+++A +F HF K N ++N +I+ + F ML V +
Sbjct: 118 KPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVD 177
Query: 129 RLTYPFVSKSVASLSLLSLGRGLH-------------------CLIVKSG---VEYDAFV 166
+ ++ V K+ + L L+ G +H CL ++ G + F
Sbjct: 178 KFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFD 237
Query: 167 RV---------HLADMYVQLGKTRGAFKVFDETPEKNKS--------------------- 196
R+ + D YV+ G + A ++FD P + K+
Sbjct: 238 RMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVA 297
Query: 197 ---------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
++ WN +I+GC K G + A LF MPK++V SW +++DG+ + G++
Sbjct: 298 WELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEID 357
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSAC 306
A LF++MPE+ V+S AM+ G+ QNG +AL F ML + + T++ LSA
Sbjct: 358 IARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAI 417
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A++G + GV +H YI N F L +G AL+DMYAKCG+I+ A + W
Sbjct: 418 AQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNALIDH----------WN 467
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
A+J GLAIHG E A + F +M +PB F+ +L AC ++G VK L F MR
Sbjct: 468 AIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXV 527
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +EP ++H+ +V++L R G V++ F+ KMP P+ V+W L ACR H++ I +
Sbjct: 528 HKVEPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGE 586
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/459 (31%), Positives = 235/459 (51%), Gaps = 41/459 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNL 94
L+H + QL+Q HAQ++ L S+ + ++L++ + S + S+ +A +F H +
Sbjct: 11 LLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTI 70
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
IFN +I+ L F + I+ F + R + P+ T P+V K+ A ++ + LG +H
Sbjct: 71 CIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHAC 130
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+K G + FV L MY R A +VFDE PE S + W V+I G + +G
Sbjct: 131 TIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPEL----SAVSWTVMIYGYANMGD 186
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ A ELF M K+ W ++I G++ QN
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYV-------------------------------QN 215
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
++ L MF M V ++ +V+ LSACA +GAL+ G+ +H Y+ L +
Sbjct: 216 NCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
T L+DMYAKCG+++ A +F E ++D + W AMI G+A+ G E AI+ F +M +G +
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
PD F+A+L AC SG V + ++ M + IEP +H+ V++LLSRVG+ ++A
Sbjct: 336 PDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEG 395
Query: 455 FINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQ 489
I ++P+T + V W A AC H T+ A++A +
Sbjct: 396 VIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAE 434
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 260/492 (52%), Gaps = 50/492 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L+H L+ +HA +I + + + +++ ++ A ++F+ ++
Sbjct: 159 VLELVH-------LQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARD 211
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ +N L+ G A+ + + + + M + P++ T+ + + A S L +G+ +H
Sbjct: 212 VISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHG 271
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING----- 208
I+++G+E D+ + L MY++ G AF++F+ K+ V+ W +I+G
Sbjct: 272 HILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKD----VISWTAMISGLVQND 327
Query: 209 ------------------------------CSKIGYLRKAVELFGMMPKK----NVASWV 234
C+++G + G + ++ ++ S
Sbjct: 328 CADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQN 387
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL+ + + G L+++ +F++M + +VSW A+++G +QNG KAL +F +M A R
Sbjct: 388 SLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRP 447
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ TVVS L ACA +GAL G +HN+++ + G I TALVDMY+KCG++ +A F
Sbjct: 448 DSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCF 507
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
++DL++W+++I G HG+ E A++ + +++G +P+ ++L+IL+AC ++G V
Sbjct: 508 DRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVD 567
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L+FF SM D+ IEP ++H +V+LLSR G+V++A +F +M P + G L A
Sbjct: 568 QGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDA 627
Query: 475 CRTHKDTKIAKI 486
CRT + ++ I
Sbjct: 628 CRTTGNVELGDI 639
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 142/575 (24%), Positives = 250/575 (43%), Gaps = 78/575 (13%)
Query: 5 VFNRLTTAIA------PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
+ NRL+TA A +++ S+ P + T ++ S + H ++I+
Sbjct: 19 IINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDG 78
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+ S I T LI+ S A +FD +N+ + +I S +
Sbjct: 79 YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYN 138
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
M R ++P+ +T + V L L + LH +++ G D + + ++Y + G
Sbjct: 139 IMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCG 195
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---------------FG 223
+ A +F E + V+ WN L++G +++G +R+ ++L FG
Sbjct: 196 RVEDAQALF----ELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251
Query: 224 -------MMPKKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEK 259
M K V V SLI +++ G++ A +FE M K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
V+SWTAMI+G QN A+ A+ +F +ML + V + T+ S L+ACA++G+ G VH
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI L +LV MYAKCG++E + VF +D+++W A++ G A +G
Sbjct: 372 GYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLC 431
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHH 436
+A+ F +M + PD +++L AC G Q K NF + P +
Sbjct: 432 KALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK----SCLGPCILID 487
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA------------ 484
T +V++ S+ G + A ++MP+ D V W ++ +H + A
Sbjct: 488 TALVDMYSKCGDLGSAQKCFDRMPQQ-DLVSWSSIIAGYGSHGKGETALRMYSDFLHTGI 546
Query: 485 ------KIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
+++ S+CS N + Q +S+ + + G
Sbjct: 547 QPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 7/210 (3%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ A+IN S G L + ML + T S + AC + G+ H +
Sbjct: 15 SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + I T+L++ Y+K G+ ++A VF +++++ WT MI G ++ A
Sbjct: 75 IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-LNFFDSMRFDYFIEPSVKHHTVVVN 441
+ M G +P L +L SG ++L L + Y V ++N
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLL-----SGVLELVHLQCLHACVIQYGFGSDVALANSMLN 189
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ + G+V+ A M + D + W +L
Sbjct: 190 VYCKCGRVEDAQALFELM-DARDVISWNSL 218
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 246/491 (50%), Gaps = 47/491 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFTPK 92
++ I + + RQIHAQ++ L +T++++ A+ + DYA D+
Sbjct: 8 LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYAC---DYLEQG 64
Query: 93 NLHI----FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N + FN LI G Q +S + M+R P+ T+P + K+ ++ S G
Sbjct: 65 NTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREG 124
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R +H ++VK G+ D +V+ L Y G A KVFDE ++ V+ WN LI+G
Sbjct: 125 RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRD----VVSWNSLISG 180
Query: 209 CSKIGYLRKAVELFGMMP-----------------------------------KKNVASW 233
K G+ +A+ +F M K N+
Sbjct: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLG 240
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+++D +++ G +A +F+++P + +VSWT MI G Q+ +++L +F M G+
Sbjct: 241 NAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGIS 300
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ + S LSACA +G L+ G VH YI+ IGTA+VDMYAKCG IE A +
Sbjct: 301 PDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKI 360
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F +++ TW A++ GLA+HG +A+ F+ M+ SG +P+ FLAILTAC + G V
Sbjct: 361 FYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLV 420
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
+FD+M Y + P ++H+ +++L R G +++A+ MP PD +IWG L
Sbjct: 421 DEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLN 480
Query: 474 ACRTHKDTKIA 484
AC T + +++
Sbjct: 481 ACTTVGNIELS 491
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 117/250 (46%), Gaps = 16/250 (6%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +IFD +++ + ++I GL ++ H + + F M L + P+ + V + AS
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACAS 315
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L G +H I + G+++D + + DMY + G A K+F ++N
Sbjct: 316 LGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRN----TFT 371
Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
WN L+ G + G + +A+ LF +M K N ++++++ G + + + F+ M
Sbjct: 372 WNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMS 431
Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
+ + + MI+ F + G E+A+ + M ++ + L+AC VG +
Sbjct: 432 KLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTM---PMKPDVLIWGLLLNACTTVGNI 488
Query: 313 EAGVRVHNYI 322
E R+ +YI
Sbjct: 489 ELSHRIQDYI 498
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 250/520 (48%), Gaps = 73/520 (14%)
Query: 37 LIHSSNSTKQLRQIHAQIILH-NLFASSRITTQLISSASL----HKSIDYALSIFDHFTP 91
L+ S ++L Q+HA +++H +L A+S + L S +L H + +A +FD
Sbjct: 17 LLRQCRSIQRLNQLHAHLLVHGSLSAASDLL--LASYCALAKAGHGVLCHARRLFDGIPG 74
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ ++N +IR +S + + MLR + PN T PFV K+ +
Sbjct: 75 PDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAV 134
Query: 152 HCLIVKSGVEYDAFV-----------------RVHLADM--------------YVQLGKT 180
H + ++ G+ FV R +M Y Q G T
Sbjct: 135 HGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDT 194
Query: 181 RGAFKVFDETPEKNKSES-----------------------------------VLLWNVL 205
R +F E + E ++L + L
Sbjct: 195 REVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESAL 254
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ K G L A F MMP K+V SW S++ + G + A F+ MPE+ +VSW
Sbjct: 255 VDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWN 314
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI+ + Q G+ +AL ++ QM G+ ++ T+V+ LSA ++G L G VH YI N
Sbjct: 315 AMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDN 374
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ ++ +L+DMYAKCG ++ A +F E +++++W +I GLA+HGR I +F
Sbjct: 375 IYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFF 434
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+ M+ PDG F+A+L+AC + G ++ ++F+SMR Y ++ V+H+ +V+LL R
Sbjct: 435 RSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGR 494
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
G ++KA+ I +MP PD V+WGAL ACR H + KI +
Sbjct: 495 RGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGR 534
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 16/269 (5%)
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G L A LF+ +P V + +I + + +AL + ML G+ N+FT+ +
Sbjct: 60 GVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVV 119
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKD 361
AC A E + VH GL G + G AL+ YA G++ + F E +++
Sbjct: 120 KACTIAQAREHALAVHGVAL--RLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRN 177
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+++W +MI G A G + F +M G D +++L AC G +++
Sbjct: 178 VVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHC 237
Query: 422 SM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
M R D +E + +V++ + G + A MP V W ++ CA
Sbjct: 238 RMLVSGSRVDLILE------SALVDMYGKCGDLWMARRCFEMMP-IKSVVSWTSMLCAQT 290
Query: 477 THKDTKIAKIALQSSCSLNLSIPQAMSYC 505
H A+ N+ AM C
Sbjct: 291 KHGSVNAARCWFDHMPERNIVSWNAMISC 319
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 170/545 (31%), Positives = 266/545 (48%), Gaps = 66/545 (12%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S I S+++ + ++ +H + RI LI + SID A +FD +++
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N ++ GLA+N + F+ M + + P+ TY + + S L +H
Sbjct: 491 SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V++G+ D V MY++ G A +FD+ ++ V WN +I G ++
Sbjct: 551 VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRH----VTTWNAMIGGAAQQRCG 606
Query: 216 RKAVELFGMMPKK----------NVAS---------WV-------------------SLI 237
R+A+ LF M ++ N+ S WV +L+
Sbjct: 607 REALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALV 666
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ + G++K A ++F+ M E+ V +WT MI G +Q+G A + F QML G+ +
Sbjct: 667 HTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDAT 726
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T VS LSACA GALE VHN+ +G ALV MYAKCG+I+ A VF +
Sbjct: 727 TYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+D+ +WT MI GLA HGR +A+ +F KM G +P+G ++A+LTAC ++G V
Sbjct: 787 VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR 846
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F SM DY IEP+++H+T +V+LL R G +++A FI MP PD WGAL AC T
Sbjct: 847 RQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT 906
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSY------------------CQTFMQQKG----DG 515
+ + ++A+ A + L L A +Y ++ MQ+KG G
Sbjct: 907 YGNLEMAEFAAKE--RLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPG 964
Query: 516 RTWRE 520
R+W E
Sbjct: 965 RSWIE 969
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 191/402 (47%), Gaps = 53/402 (13%)
Query: 48 RQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
+Q+H II NL+ ++++ I L A +FD KN++I+ +I G
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQ----CARQVFDKLLKKNIYIWTTMIGG 193
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
AE H + + + M + +PN +TY + K+ L G+ +H I++SG + D
Sbjct: 194 YAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSD 253
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
V L +MYV+ G A +FD+ E+N V+ W V+I G + G ++A LF
Sbjct: 254 VRVETALVNMYVKCGSIEDAQLIFDKMVERN----VISWTVMIGGLAHYGRGQEAFHLFL 309
Query: 224 MMPKK----NVASWVSLIDG-----------------------------------FMRKG 244
M ++ N ++VS+++ + + G
Sbjct: 310 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 369
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL- 303
+ A +F+ M E+ + SWT MI G +Q+G ++A ++F QM G N T +S L
Sbjct: 370 SIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILN 429
Query: 304 -SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
SA A ALE VH + F IG AL+ MYAKCG+I+ A LVF ++D+
Sbjct: 430 ASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDV 489
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
++W AM+ GLA +G +A F +M G PD T +L++L
Sbjct: 490 ISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 187/392 (47%), Gaps = 54/392 (13%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHF 117
+ + L+S + S Y LSI F P L N + G AE +H
Sbjct: 43 VGSTLLSGRQMRHSRLYFLSISGCFKSEKHKYLPSVLVCANASVDGAAEQTHNVITAKDA 102
Query: 118 VFMLRLSVRP----NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
V ML++ V+ + +Y + + + L + +H I+KSG+E + +V L +
Sbjct: 103 VAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRV 162
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----- 228
Y++ G+ + A +VFD+ +KN + +W +I G ++ G+ A+ ++ M ++
Sbjct: 163 YIRCGRLQCARQVFDKLLKKN----IYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218
Query: 229 ----------------------------------NVASWVSLIDGFMRKGDLKKAGELFE 254
+V +L++ +++ G ++ A +F+
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M E+ V+SWT MI G + G ++A +F QM G N +T VS L+A A GALE
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
VH++ L +G ALV MYAK G+I+ A +VF E+D+ +WT MI GLA
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQ 398
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
HGR ++A F +M +G P+ T +L+IL A
Sbjct: 399 HGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 186/421 (44%), Gaps = 45/421 (10%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT I+ + K ++IHA II + R+ T L++ SI+ A IF
Sbjct: 218 NEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +N+ + V+I GLA Q F+ M R PN TY + + AS L
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+ +H V +G+ D V L MY + G A VFD E++ + W V+I
Sbjct: 338 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERD----IFSWTVMI 393
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLID-----------------------G 239
G ++ G ++A LF M + N+ +++S+++ G
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453
Query: 240 FM--------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
F+ + G + A +F+ M ++ V+SW AM+ G +QNG +A +F
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QM G+ + T +S L+ ALE VH + +G+A + MY +CG
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG 573
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I+ A L+F + + + TW AMI G A +A+ F +M G PD T F+ IL+
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633
Query: 406 A 406
A
Sbjct: 634 A 634
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 131/243 (53%), Gaps = 2/243 (0%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+ ++R G L+ A ++F+++ +K + WT MI G+++ G AE A+ ++ +M + N
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ T +S L AC L+ G ++H +I + F + TALV+MY KCG+IE A L+F
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ E+++++WT MI GLA +GR ++A F +M G P+ +++IL A +G ++
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ S + + ++ +V++ ++ G +D A + M E D W +
Sbjct: 339 -VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER-DIFSWTVMIGGL 396
Query: 476 RTH 478
H
Sbjct: 397 AQH 399
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 1/185 (0%)
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
A+ A+AM + G+ + F+ V+ L C K + +VH I + +
Sbjct: 99 AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+ +Y +CG ++ A VF + +K++ WT MI G A +G E A++ + KM +P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+L+IL AC +K + F + V+ T +VN+ + G ++ A
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGF-QSDVRVETALVNMYVKCGSIEDAQLIF 277
Query: 457 NKMPE 461
+KM E
Sbjct: 278 DKMVE 282
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 246/500 (49%), Gaps = 53/500 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + L+ S QLRQI AQ++LH S LI A +Y+ +F
Sbjct: 33 ERDFLFLLKKCISVNQLRQIQAQMLLH----SVEKPNFLIPKAVELGDFNYSSFLFSVTE 88
Query: 91 PKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N + FN +IRGL N H ++ +S + M ++P++ TY FV + A L + +G
Sbjct: 89 EPNHYSFNYMIRGLTNTWNDH-EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVG 147
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R +H + K G+E D + L MY + G+ A K+FDE E++ + WN +I+G
Sbjct: 148 RSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERD----TVSWNSMISG 203
Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVS----------------------------- 235
S+ GY + A++LF M ++ + + VS
Sbjct: 204 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 263
Query: 236 ------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
LI + + GDL A +F QM +K V+WTAMI +SQNG++ +A +FF+M
Sbjct: 264 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 323
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
GV + T+ + LSAC VGALE G ++ + S + T LVDMY KCG +E
Sbjct: 324 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEE 383
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF K+ TW AMI A G ++A+ F +M P F+ +L+AC +
Sbjct: 384 ALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVH 440
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V +F M + + P ++H+T +++LLSR G +D+A F+ + P PD ++
Sbjct: 441 AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLA 500
Query: 470 ALFCACRTHKDTKIAKIALQ 489
A+ AC KD I + A++
Sbjct: 501 AILGACHKRKDVAIREKAMR 520
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/549 (28%), Positives = 267/549 (48%), Gaps = 97/549 (17%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
SH+P ++I+ T I L+ S +++ + +IHA++I + + +TT+++ +D+
Sbjct: 7 SHQPWSSISPT--IKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIV--------LDF 56
Query: 82 A------LSIFDHFTPKNLHI-----------FNVLIRGLAENSHFQSCISHFVFMLRLS 124
A L+ F F H+ +N +I+ + + + F ML
Sbjct: 57 ADSRRSYLAEFARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETG 116
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA------------- 171
V ++ + V K+ + L + G +H + K+G+ D +++ L
Sbjct: 117 VSVDKFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYAR 176
Query: 172 ------------------DMYVQLG---KTRGAF-------------------------- 184
D YV+ G RG F
Sbjct: 177 QVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADG 236
Query: 185 -----KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
K+FDE PEK+ ++ WN LI+G K G + A LF MPK++V +W +++DG
Sbjct: 237 VNVAKKLFDEMPEKD----LISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDG 292
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFT 298
+ + G + +A LF++MP + VV++ +MI G+ QN ++A+ +F M ++ + ++ T
Sbjct: 293 YAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETT 352
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+V LSA A++G L V +H YI N F L G +G AL+D Y+KCG+I+ + VF E +
Sbjct: 353 LVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIE 412
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
K + W AMI GLAIHG E A ++ +PD F+ +L AC +SG VK L
Sbjct: 413 NKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLL 472
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F+ MR + IEP ++H+ +V++LSR G ++ A N I +MP P+ VIW AC H
Sbjct: 473 CFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNH 532
Query: 479 KDTKIAKIA 487
K+ + ++
Sbjct: 533 KEFETGELV 541
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 12/214 (5%)
Query: 3 GHVFNRL-TTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
G+V NR AI ++ K SH + T ++S I + IH I+ +
Sbjct: 323 GYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFR 382
Query: 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
++ LI + S SI ++ +F+ K++ +N +I GLA + +S + +
Sbjct: 383 LGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 442
Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYVQL 177
+ S++P+ +T+ V + + L+ GL C + K +E + D+ +
Sbjct: 443 EKRSIKPDDITFIGVLNACSHSGLVK--EGLLCFELMRRKHKIEPKLQHYGCMVDILSRS 500
Query: 178 GKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
G A + +E P E N ++W + CS
Sbjct: 501 GSIELAKNLIEEMPIEPND----VIWRTFLTACS 530
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/490 (29%), Positives = 248/490 (50%), Gaps = 80/490 (16%)
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
H P L NVLIR LA F ++ + + + + TYPFV +++ ++ L
Sbjct: 7 HAMP--LRDCNVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVE 64
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H VK+G +DA+ L +MY LG+ A +VFDE P++ ++LWN+++
Sbjct: 65 GRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQR----FLVLWNMMMR 120
Query: 208 GCSKIGYLRKAVELF------GMMPK--------------------KNVASWV------- 234
+ G AV L G P + + S++
Sbjct: 121 CYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFS 180
Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ--- 286
+L+D + + G L++A ++FEQMPE+ ++SWT +++G+ G+ +KA F+Q
Sbjct: 181 LPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQ 240
Query: 287 --------MLDAGVR--------------------ANDFTVVSALSACAKVGALEAGVRV 318
M++A V+ + FTVV+ L+ CA +GAL+ G +
Sbjct: 241 KDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWI 300
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y + + +GTAL++MY+KCG+++ + +FG + KD WTA+I GLA +G+
Sbjct: 301 HQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQA 360
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A++ F++M S T+PDG F+ +L+AC + G V +F +M+ Y IEP ++H++
Sbjct: 361 SKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSC 420
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFV-IWGALFCACRTHKDTKIA----KIALQSSCS 493
+VNLL G + +A I MP D + ++GAL AC+ + + +++ K + CS
Sbjct: 421 LVNLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCS 480
Query: 494 LNLSIPQAMS 503
N + MS
Sbjct: 481 PNPDVNVLMS 490
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/419 (33%), Positives = 215/419 (51%), Gaps = 48/419 (11%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A + + ++ + N LIR LA ++ + + +LR P T P + KS+
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216
Query: 140 ASLSLLSLGRGL----HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDET 190
A + RGL H VK G+ +A +RVH
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVH--------------------- 255
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
+G L A+ L + +++ +LI + R G + A
Sbjct: 256 ------------------AGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDAR 297
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF++MP + VSW+AM+NG+ Q G+ +AL +F +M GVR +D +V L+ACA++G
Sbjct: 298 ALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLG 357
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G VH Y+ N+ + +GTALVDMYAKCG ++ A VF KEK++L WT MI
Sbjct: 358 VLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIK 417
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GLA+HGR +A++ F +M G +PD F+ L AC ++G V FDSM Y I+
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++H+ +V+LL+R G +++A + KMP PD +IWGAL CR HK+ ++A+ ++
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVK 536
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 30/303 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LI++ + + A ++FD +N ++ ++ G + + + F M VRP+
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
V + A L +L G+ +H + + + F+ L DMY + G+ + A +VF
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
EKN VL W +I G + G +A+ELF M + V +++ + G
Sbjct: 403 VMKEKN----VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458
Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ K ELF+ M K + + M++ ++NG +A M +M
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM------------ 506
Query: 300 VSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTAL--VDMYAKCGNIEAASLVFGE 356
+ A + GAL AG R H + ++ +K I Y GNI AAS
Sbjct: 507 --PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564
Query: 357 TKE 359
+E
Sbjct: 565 ARE 567
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 17/226 (7%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q + +H + +N+ + + T L+ + + A+ +F KN+ + +I+GL
Sbjct: 360 EQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGL 419
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYD 163
A + + F M RL V+P+ + + + L+ GR L ++ K G++
Sbjct: 420 AMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPK 479
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL-- 221
+ D+ + G A ++ ++ P K + L+W L+ GC K VEL
Sbjct: 480 IEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA---LIWGALMAGCR----FHKNVELAE 532
Query: 222 ------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ P K+ ++V L + + G A E+ M EKGV
Sbjct: 533 YVVKHWIELEPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGV 577
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 160/531 (30%), Positives = 266/531 (50%), Gaps = 78/531 (14%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSI-DYALS 84
+ T +I+L+ ++ KQ +QIHA I++ N F R I L+ + ++++ +YA S
Sbjct: 1 MAATKLITLMKKCSTVKQAKQIHAHILI-NGFTFLRPLLIHRMLLWDVTNYRTMANYAYS 59
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+ H + + +IR ++ F +S +V M R S+ P KS A +
Sbjct: 60 MLHHLHIPDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHD 119
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ G +H + G +V+ L D+Y ++G A KVFDE K SV+ WN
Sbjct: 120 MLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANK----SVVSWNS 175
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
L++G K G L +A LF +P K+V SW S+I G+ + G++ +A LF++MPE+ + SW
Sbjct: 176 LLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSW 235
Query: 265 TAMINGF-------------------------------SQNGEAEKALAMFFQM------ 287
AMI GF S+ G+ + A +F QM
Sbjct: 236 NAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLL 295
Query: 288 ---------------------------LDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
D V + T+ S +SAC+++G LE + +
Sbjct: 296 SYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIES 355
Query: 321 YISCNDFG--LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
++ NDFG L + TAL+D+YAKCG+I+ A +F +++DL+ ++AMI+G I+G+
Sbjct: 356 HM--NDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKA 413
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
AI+ F++M+ P+ + +LTA ++G V+ F+SM+ DY + PS+ H+ +
Sbjct: 414 SDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMK-DYGLVPSIDHYGI 472
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V+L R G +D+A I MP P+ +WGAL ACR H + ++ +IA+Q
Sbjct: 473 MVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQ 523
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 121/278 (43%), Gaps = 33/278 (11%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR--LSVR 126
+I+ S +D A +FD K+L +N +I A+NS + + F ML+ + V
Sbjct: 269 MIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVH 328
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+++T V + + L L + + G+ D + L D+Y + G A+++
Sbjct: 329 PDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYEL 388
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMR 242
F +++ ++ ++ +I GC G A++LF M + N+ ++ L+ +
Sbjct: 389 FHNLRKRD----LVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNH 444
Query: 243 KGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQM---LDAGVRAN 295
G ++K + F M + G+V + M++ F + G ++A + M +AGV
Sbjct: 445 AGLVEKGYQCFNSMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVW-- 502
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
GAL R+HN + + ++ I
Sbjct: 503 --------------GALLLACRLHNNVELGEIAVQHCI 526
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 235/487 (48%), Gaps = 52/487 (10%)
Query: 48 RQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R IHA II H S ++ L++ S ++ A + + + + LI G
Sbjct: 26 RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVH 85
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N F + HF M R +V+PN T+P V K+ A + + G+ +H L +K G+ YD FV
Sbjct: 86 NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------------------- 206
DMY + G A +FDE P++N + WN I
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRN----LATWNAYISNAVQDRRSLDAIVAFKEFL 201
Query: 207 ---------------NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLK 247
N C + L +L + K++V+ LID + + GD+
Sbjct: 202 CVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIV 261
Query: 248 KAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +F ++ K VVSW +M+ QN E E+A +F Q V DF + S LSAC
Sbjct: 262 SAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSAC 320
Query: 307 AKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A++G LE G VH +C + + +G+ALVDMY KCG+IE A VF E E++L+T
Sbjct: 321 AELGGLELGRSVHALAVKACVEDNI--FVGSALVDMYGKCGSIENAEQVFSELPERNLVT 378
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
W AMI G A G + A++ F++M G P ++IL+ C G V+ + F+S
Sbjct: 379 WNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFES 438
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
MR +Y IEP +H VV+LL R G VD+A FI M P +WGAL ACR H T+
Sbjct: 439 MRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTE 498
Query: 483 IAKIALQ 489
+ KIA +
Sbjct: 499 LGKIAAE 505
>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
Length = 828
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/407 (34%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A S+FD +N+ + +I G + F+ F+ M + VR N T + ++
Sbjct: 227 ARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACR 286
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G +H L+ + +E+D F+ L MY +LG A VF K+ +
Sbjct: 287 DFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDS----V 342
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI G + + +A ELF MP K++ SW +I GF KG++ K ELF MPEK
Sbjct: 343 SWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKD 402
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++WTAMI+ F NG E+AL F +ML V N +T S LSA A + L G+++H
Sbjct: 403 DITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHG 462
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + ++ +LV MY KCGN A +F E +++++ MI G + +G ++
Sbjct: 463 RVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKE 522
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F + +G EP+G FLA+L+AC + G V L +F SM+F Y IEP H+ +V
Sbjct: 523 AVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMV 582
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L R G +D+A N I+ MP P +WG+L A +TH +A++A
Sbjct: 583 DLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELA 629
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 32/370 (8%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+H+P T S + ++ ++ + Q ++QI ++L + +L +
Sbjct: 28 SNHEPITQKTR----SFLETTTTSTAIFQCNSQI------------SKLARNGNLQE--- 68
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
A +IF + +++ +N +I AEN F + VR ++ +
Sbjct: 69 -AEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFD---EMPVRATTSYNAMITAMIK 124
Query: 141 SLSLLSLGRGLHCLIV-KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+ L L C I K+ V Y + +V+ G+ A ++ ETP K +
Sbjct: 125 NKCDLGKAYELFCDIPEKNAVSYATMI-----TGFVRAGRFDEAECLYAETPVKFRDP-- 177
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
+ NVL++G ++G +AV +F M K V S+ S++DG+ + G + A LF++MPE+
Sbjct: 178 VASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPER 237
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRV 318
V++WTAMI+G+ + G E +F +M G VR N T+ AC G ++
Sbjct: 238 NVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQI 297
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H +S +G +L+ MY+K G + A VFG K KD ++W ++I GL +
Sbjct: 298 HGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQI 357
Query: 379 EQAIQYFKKM 388
+A + F+KM
Sbjct: 358 SEAYELFEKM 367
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 132/312 (42%), Gaps = 47/312 (15%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S ++ N I+ ++ G L++A +F M +++ SW ++I + G + KA ++F++
Sbjct: 47 STAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDE 106
Query: 256 MPEKGVVSWTAMINGFSQN----GEA--------EKALAMFFQMLDAGVRANDFTVVSA- 302
MP + S+ AMI +N G+A EK + M+ VRA F
Sbjct: 107 MPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECL 166
Query: 303 -----------------LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
LS +VG VRV ++ + +++VD Y K G
Sbjct: 167 YAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEV----VSYSSMVDGYCKMG 222
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL- 404
I A +F E++++TWTAMI G G +E F +M G + LA++
Sbjct: 223 RILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMF 282
Query: 405 TAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
AC + G L + FD F+ S ++++ S++G + +A M
Sbjct: 283 RACRDFFRYREGSQIHGLLSRMPLEFDLFLGNS------LISMYSKLGYMGEAKAVFGVM 336
Query: 460 PETPDFVIWGAL 471
+ D V W +L
Sbjct: 337 -KYKDSVSWNSL 347
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I S I + +F K+ + +I N +++ + F MLR V
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVC 435
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V + ASL+ L G +H +VK + D V+ L MY + G T A+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E N ++ +N +I+G S G+ ++AV+LF M+ + N ++++L+ +
Sbjct: 496 FSCISEPN----IVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVH 551
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
G + + F+ M E G + M++ F ++G ++A + M
Sbjct: 552 VGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTM 601
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 259/523 (49%), Gaps = 59/523 (11%)
Query: 16 TTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISS 72
+T I+S +P N T I+ + +S K L ++IH+ ++++ S T LI+
Sbjct: 25 STAIQSFQQPYNLTT---CIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 73 ASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S +++ALSIF T + N+ FN +I G N + + M V P++ T
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFT 141
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+P K A L +L + + +H L+ K G+E D F+ L + Y++ G A F+E P
Sbjct: 142 FPCAIK--ACLDVLEIKK-IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 198
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK----------------- 228
++ V+LWN ++NG ++IG +E F M P +
Sbjct: 199 IRD----VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254
Query: 229 ----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
VA SLID + + ++ A E+FE M EK + SW ++++
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHE 314
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q G+ + L + +ML AG++ + TV + L AC+ + AL G +H Y+ + G G
Sbjct: 315 QCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 374
Query: 333 ------IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ A++DMYAKCG++ A LVF KD+ +W MI G +HG +A++ F
Sbjct: 375 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFS 434
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M +PD F+ +L+AC ++G V NF M+ Y + P+++H+T V+++L R
Sbjct: 435 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRA 494
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
GQ+D+A MP + V+W AL ACR HK +A++A Q
Sbjct: 495 GQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 537
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 260/492 (52%), Gaps = 50/492 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L+H L+ +HA +I + + + +++ ++ A ++F+ ++
Sbjct: 159 VLELVH-------LQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARD 211
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ +N L+ G A+ + + + + M + P++ T+ + + A S L +G+ +H
Sbjct: 212 VISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHG 271
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING----- 208
I+++G+E D+ + L MY++ G AF++F+ K+ V+ W +I+G
Sbjct: 272 HILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKD----VISWTAMISGLVQND 327
Query: 209 ------------------------------CSKIGYLRKAVELFGMMPKK----NVASWV 234
C+++G + G + ++ ++ S
Sbjct: 328 CADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQN 387
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL+ + + G L+++ +F++M + +VSW A+++G +QNG KAL +F +M A R
Sbjct: 388 SLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRP 447
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ TVVS L ACA +GAL G +HN+++ + G I TALVDMY+KCG++ +A F
Sbjct: 448 DSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCF 507
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
++DL++W+++I G HG+ E A++ + +++G +P+ ++L+IL+AC ++G V
Sbjct: 508 DRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVD 567
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L+FF SM D+ IEP ++H +V+LLSR G+V++A +F +M P + G L A
Sbjct: 568 QGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDA 627
Query: 475 CRTHKDTKIAKI 486
CRT + ++ I
Sbjct: 628 CRTTGNVELGDI 639
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 141/575 (24%), Positives = 250/575 (43%), Gaps = 78/575 (13%)
Query: 5 VFNRLTTAIA------PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
+ NRL+TA A +++ S+ P + T ++ S + H ++I+
Sbjct: 19 IINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDG 78
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+ S I T LI+ S A +FD +N+ + +I S +
Sbjct: 79 YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYN 138
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
M R ++P+ +T + V L L + LH +++ G D + + ++Y + G
Sbjct: 139 IMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCG 195
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---------------FG 223
+ A +F E + V+ WN L++G +++G +R+ ++L FG
Sbjct: 196 RVEDAQALF----ELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251
Query: 224 -------MMPKKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEK 259
M K V V SLI +++ G++ A +FE M K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
V+SWTAMI+G QN A+ A+ +F +ML + V + T+ S L+ACA++G+ G VH
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI L +LV MYAKCG++E + VF +D+++W A++ G A +G
Sbjct: 372 GYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLC 431
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHH 436
+A+ F +M + PD +++L AC G Q K NF + P +
Sbjct: 432 KALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK----SCLGPCILID 487
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH------------------ 478
T +V++ S+ G + A ++MP+ D V W ++ +H
Sbjct: 488 TALVDMYSKCGDLGSAQKCFDRMPQQ-DLVSWSSIIAGYGSHGKGETALRMYSDFLHTGI 546
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
+ + +++ S+CS N + Q +S+ + + G
Sbjct: 547 QPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 7/210 (3%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ A+IN S G L + ML + T S + AC + G+ H +
Sbjct: 15 SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + I T+L++ Y+K G+ ++A VF +++++ WT MI G ++ A
Sbjct: 75 IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-LNFFDSMRFDYFIEPSVKHHTVVVN 441
+ M G +P L +L SG ++L L + Y V ++N
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLL-----SGVLELVHLQCLHACVIQYGFGSDVALANSMLN 189
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ + G+V+ A M + D + W +L
Sbjct: 190 VYCKCGRVEDAQALFELM-DARDVISWNSL 218
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/450 (30%), Positives = 226/450 (50%), Gaps = 35/450 (7%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
P N+ P + L+ ++ KQL+Q+H +II + L + +LI +
Sbjct: 8 PDINVPYLETPRTRFGSEEALVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSP 67
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
+ + YA +FD ++ +NV+IR + F ML P++ TYP
Sbjct: 68 SYGKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPC 127
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V + + + L +GR H L +K G D +V+ + ++Y + + VFD+
Sbjct: 128 VINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDK----- 182
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
M +NV +W ++I GF+ G L A ELFE
Sbjct: 183 ------------------------------MCVRNVFAWTTVIAGFVACGKLDTARELFE 212
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
QMP K VVSWTA+I+G+ ++ + +A +F +M VR N++T+VS + AC ++G+L+
Sbjct: 213 QMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKL 272
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G RVH++ N F L+ +GTAL+DMY+KCGN++ A VF + + L TW MI L +
Sbjct: 273 GRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGV 332
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HG ++A+ F++M + PD F+ +L+AC Y ++LA +F+ M Y I P ++
Sbjct: 333 HGYRDEALSIFEEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILE 392
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPD 464
H+T +V + +R ++D+ N M D
Sbjct: 393 HYTCMVEIHTRAIKLDEIYMSGNTMEANHD 422
>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
Length = 534
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 241/461 (52%), Gaps = 16/461 (3%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGL 104
RQ+ Q+++ L +R LI+S+ S +A ++FD+ P +N++++ I
Sbjct: 7 RQLQVQLLVRGLPLPARAAVSLIASS---HSPGHARAVFDNAVPTACENVYLWTATIAAY 63
Query: 105 AEN-----SHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
A + S + ++ F MLR V RPN T V + ++L + +G +H +V +
Sbjct: 64 ARHASSSPSVAEGALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLVNA 123
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G+ VR L DMY G+ A +VFDE + SV+L N ++ + G +
Sbjct: 124 GLGRAEHVRAALVDMYGNHGRVADARRVFDEM----SATSVVLGNTMVACYVRAGDVESG 179
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
+F M ++++ SW +L+ G++R+G A ELFE+MP++ V SW I +SQ
Sbjct: 180 RVVFDRMVERDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWNMAIAAYSQERSWA 239
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
A+A+F +M A + + T+ +SACA++G+L +VH + + + +L+
Sbjct: 240 DAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVLNSLI 299
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG+I A L+F ET KD +++ MI LA HG A+Q F +M +PD
Sbjct: 300 DMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKERLQPDAV 359
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
L +L+AC ++G V +F+SM+ +Y IE S H+ +V+L R G + +A
Sbjct: 360 TLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEAYELARA 419
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
MP P +WGAL ACR H + ++ K+A + ++ P
Sbjct: 420 MPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIEPRNP 460
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H + + + + LI + SI A +F K+ +NV+I LA +
Sbjct: 277 RQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARH 336
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFV 166
H + + F M + ++P+ +T V + A L+ G+ + +E
Sbjct: 337 GHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDH 396
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-----IGYLRKAVEL 221
+ D+Y + G + A+++ P + + +W LIN C K +G + A EL
Sbjct: 397 YACMVDLYGRAGLIKEAYELARAMPMEPHAG---VWGALINACRKHCNVEVGKV-AAREL 452
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ P +N ++V L + R + +++ M KG+
Sbjct: 453 IAIEP-RNPGTYVLLANTLARGQQWEFVETVWQSMRGKGI 491
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 240/491 (48%), Gaps = 45/491 (9%)
Query: 41 SNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
S S+ R +HA I+ H+ S + L++ S + A + P+ + +
Sbjct: 20 SRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTS 79
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
LI G N F S + HF M R V PN T+P V K+ ASL + G+ LH L +K G
Sbjct: 80 LISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGG 139
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------------------------- 194
D FV DMY + G A +FDE P +N
Sbjct: 140 NILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFK 199
Query: 195 ------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKG 244
+ + + +N C+ I L +L G + + ++V+ + LID + + G
Sbjct: 200 KFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCG 259
Query: 245 DLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
D+ + +F ++ + VVSW +++ QN E E+A +F Q V DF + S
Sbjct: 260 DIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSV 318
Query: 303 LSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
LSACA++G LE G VH +C + + +G+ALVD+Y KCG+IE A VF E E+
Sbjct: 319 LSACAELGGLELGRSVHALALKACVEENI--FVGSALVDLYGKCGSIEYAEQVFREMPER 376
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALN 418
+L+TW AMI G A G + A+ F++M G +++L+AC +G V+ L
Sbjct: 377 NLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQ 436
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F+SMR Y IEP +H+ VV+LL R G VD+A FI +MP P +WGAL AC+ H
Sbjct: 437 IFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMH 496
Query: 479 KDTKIAKIALQ 489
TK+ KIA +
Sbjct: 497 GKTKLGKIAAE 507
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 221/411 (53%), Gaps = 39/411 (9%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++YA + + + +N +IRG + + + + I ++ +LR P+ +TYPF+ K
Sbjct: 803 DVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLK 862
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
S + LS +G LHC +VK+G+E+D F+ L MY A K+FDE
Sbjct: 863 SSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDE-------- 914
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
MP KN+ +W S++D + + GD+ A +F++M
Sbjct: 915 ---------------------------MPYKNLVTWNSILDSYAKSGDVVSARLVFDEMT 947
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGV 316
+ VV+W++MI+G+ ++GE +AL +F QM+ G +AN+ T+VS L ACA +G L G
Sbjct: 948 MRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGK 1007
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAI 374
VH YI L + T+L+DMYAKCG+I A VF K+ D L W AMI GLA
Sbjct: 1008 VVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLAS 1067
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HG +++ F KM S +PD FL +L AC + G VK A +FF S++ + EP +
Sbjct: 1068 HGFIRESLLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSLK-ESGAEPKSE 1126
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
H+ +V++LSR G V A +FI++M P + GALF C H + ++A+
Sbjct: 1127 HYACMVDVLSRAGLVKDAHDFISEMLIKPTGSVLGALFNGCINHGNLELAE 1177
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 75/369 (20%)
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G +D F + +Y GK+ A VF+E + + + ++++ C K G + KA
Sbjct: 209 GFHFDKFTLTPVLQVYCNNGKSERALSVFNEILSRGWLDEHISTILVVSFC-KWGQVDKA 267
Query: 219 VELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMING 270
EL M+ ++ N ++ LI GF+++ + KA +LFE+M G + + +I G
Sbjct: 268 FELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGG 327
Query: 271 FSQNGEAEKALAMFFQMLDAGVRAN---------DFTVVSALSACAKV------------ 309
++ + E AL+++ ++ +G+ + F+ S LS KV
Sbjct: 328 LCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITKVIIGDIDTKSVML 387
Query: 310 ---GALEAGVR------VHNYISCNDFGLKGAIGTA----------------------LV 338
LE +R +N+I N G + G + ++
Sbjct: 388 LYKSLLEGFIRNDLVHEAYNFIQ-NLMGNHESDGMSEIVKLLKDQNKAILPDSDSLSIVI 446
Query: 339 DMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
D K + A + + + L+ + +I G+ GR E++++ +M +G E
Sbjct: 447 DCLVKANKVNMAVTLLHDIVQNGLIPSLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVE 506
Query: 395 PD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
P ++ + C ++G AL+ MRF Y EP +KH T +V L G+
Sbjct: 507 PSQYTLNCIYGCLAERCDFAG----ALDLLKKMRF-YGFEPWIKHTTCLVKKLCENGKAV 561
Query: 451 KALNFINKM 459
A +I+ +
Sbjct: 562 DACKYIDDV 570
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 22/258 (8%)
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAM 283
+++ S+ + I+G +R + + ELF G V+++ +I + +A +
Sbjct: 577 RHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNL 636
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F +M+ G++ + T S + K G ++ G+ + ++ T+L+
Sbjct: 637 FNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCA 696
Query: 344 CGNIEAASLVFGETKEKDL----LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
A + E K KD +T+ A+I GL G +A+ YF++M EPD V
Sbjct: 697 SRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPDSAV 756
Query: 400 FLAILTACWYSGQVKLALNFFDSM----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+L+++++ S + F M RF ++ +++ + V+ S V+ A
Sbjct: 757 YLSLVSSFLSSENISAGFGIFREMVHKGRFPVSVD---RNYLLAVDATS---DVNYAYKL 810
Query: 456 INKMPETPD----FVIWG 469
++K+ PD FVI G
Sbjct: 811 LSKLSNPPDYGWNFVIRG 828
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 244 GDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKAL--AMFFQMLDAGVRAND 296
G +++A +F+++ E G+ ++ ++ S++ + L A +M D G +
Sbjct: 155 GLVEEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFHFDK 214
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
FT+ L G E + V N I + L I T LV + K G ++ A +
Sbjct: 215 FTLTPVLQVYCNNGKSERALSVFNEILSRGW-LDEHISTILVVSFCKWGQVDKAFELIEM 273
Query: 357 TKEKDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
+E+ + T+ +I G R ++A Q F+KM G PD ++ ++
Sbjct: 274 LEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHKD 333
Query: 413 VKLALNFF 420
+++AL+ +
Sbjct: 334 LEMALSLY 341
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 155/516 (30%), Positives = 256/516 (49%), Gaps = 67/516 (12%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHI 96
I +S S ++++HAQ++ + +++I +L +S+ A +F+ L +
Sbjct: 21 ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLV 80
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +I GL+++ I + M ++ + LT+ F+ KS A +S + G+ + +
Sbjct: 81 WNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSM 140
Query: 157 KSGVEYDAFVRVHLADM-------------------------------YVQLGKTRGAFK 185
K G E FV L M Y Q + +
Sbjct: 141 KLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLD 200
Query: 186 VFDETPEKN-KSESVLL------------W----------------------NVLINGCS 210
+F E N +++SV + W N LI+
Sbjct: 201 LFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG 260
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ G + A +F M +KN+ SW ++I G+ + G+L A +LF +MP + V+SWT+MI G
Sbjct: 261 RRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIG 320
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+S + +A+ +F +M+ + V+ ++ TV +ALSACA +G+L+AG VH+YI +D
Sbjct: 321 YSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSD 380
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+G +L+DMY KCG +E A VF + K +D ++WT++I GLA++G E A+ F +M+
Sbjct: 381 VFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLK 440
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G P F+ +L AC + G V + F SM Y + P +KH+ VV+LL R G +D
Sbjct: 441 EGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLD 500
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
A NFI KMP PD VIW L AC+ H + +A+I
Sbjct: 501 MAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEI 536
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 239/468 (51%), Gaps = 15/468 (3%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQI-ILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
+TE ++ + K L+++H++I I H+L ++ + +L+ + ++ IFD
Sbjct: 1025 LTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 1084
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
KN+ FNV+IR N + + F M + P+ TYP V K+ + L +
Sbjct: 1085 EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 1144
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H +V+ G++ + FV L MY + G A +V DZ P ++ V+ WN L+
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRD----VVSWNSLVA 1200
Query: 208 GCSKIGYLR------KAVELFGMMPKKNVASWVSLIDGFMRK--GDLKKAGELFEQMPEK 259
GC++ G K +EL G+ P + + SL+ ++ E+F ++ K
Sbjct: 1201 GCARNGQFDDALEVCKEMELLGLKP--DAGTMASLLPAVTNTCLDNVSFVKEMFMKLANK 1258
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+VSW MI + N +A+ +F QM D V + ++ S L AC + AL G R+H
Sbjct: 1259 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 1318
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
Y+ + AL+DMYAKCG +E A VF + K +D+++WT+MI ++G+
Sbjct: 1319 EYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGR 1378
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
A+ F +M G PD F+++L+AC ++G + +F M + I P ++H +
Sbjct: 1379 DAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCM 1438
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V+LL R GQVD+A FI +MP P+ +WGAL ACR + + I +A
Sbjct: 1439 VDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLA 1486
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/488 (29%), Positives = 237/488 (48%), Gaps = 58/488 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +HAQI++ ++T L++ + SI+ + +F+ T N +N +I G N
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
FV M + PN T VSK+V L +++G+ + + G+E + V
Sbjct: 247 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVG 306
Query: 168 VHLADMYVQLGKTRGAFKVFD--------ETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
L DMY + G A VFD TP WN +I+G S+ G ++A+
Sbjct: 307 TALIDMYSKCGSLHDARSVFDTNFINCGVNTP----------WNAMISGYSQSGCSQEAL 356
Query: 220 ELFGMMPKKNVASWV----------------------------------------SLIDG 239
EL+ M + + S + ++ D
Sbjct: 357 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 416
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G L+ ++F++M E+ +VSWT ++ +SQ+ E+ALA F M + G N FT
Sbjct: 417 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 476
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S L +CA + LE G +VH + + I +AL+DMYAKCG+I A VF +
Sbjct: 477 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISN 536
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
D+++WTA+I G A HG E A+Q F++M SG + + L +L AC + G V+ L +
Sbjct: 537 PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFY 596
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F M Y + P ++H+ +++LL RVG++D A+ FI KMP P+ ++W L CR H
Sbjct: 597 FQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHG 656
Query: 480 DTKIAKIA 487
+ ++ +IA
Sbjct: 657 NVELGEIA 664
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 195/445 (43%), Gaps = 60/445 (13%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + V+I G E+ F F ML + P++ Y + +S
Sbjct: 120 ACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 179
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L LG+ +H IV G FV L +MY +LG ++ VF+ E N+ +
Sbjct: 180 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ----VS 235
Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----------------------------------- 226
WN +I+GC+ G +A +LF M
Sbjct: 236 WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCAS 295
Query: 227 ----KKNVASWVSLIDGFMRKGDLKKAGELFE-QMPEKGV-VSWTAMINGFSQNGEAEKA 280
+ NV +LID + + G L A +F+ GV W AMI+G+SQ+G +++A
Sbjct: 296 ELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEA 355
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVD 339
L ++ QM G+ ++ +T S +A A +L+ G VH + C + ++ A+ D
Sbjct: 356 LELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIAD 415
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
Y+KCG +E VF +E+D+++WT ++ + E+A+ F M G P+
Sbjct: 416 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 475
Query: 400 FLAILTAC------WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
F ++L +C Y QV L + + IE + ++++ ++ G + +A
Sbjct: 476 FSSVLISCASLCFLEYGRQVH-GLLCKAGLDTEKCIE------SALIDMYAKCGSITEAG 528
Query: 454 NFINKMPETPDFVIWGALFCACRTH 478
+K+ PD V W A+ H
Sbjct: 529 KVFDKI-SNPDIVSWTAIISGYAQH 552
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 170/396 (42%), Gaps = 69/396 (17%)
Query: 149 RGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+ +H L++KS E + + H A +Y + + R A VFDE P++N V W V+I
Sbjct: 84 KAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRN----VFSWTVMI 139
Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWV-------------------------- 234
G ++ G + F G++P K S +
Sbjct: 140 VGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFA 199
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
SL++ + + G ++ + +F M E VSW AMI+G + NG +A +F +M
Sbjct: 200 THIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 259
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCG 345
+ N +T+VS A K+ + G V N S + G++G +GTAL+DMY+KCG
Sbjct: 260 KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCAS--ELGIEGNVLVGTALIDMYSKCG 317
Query: 346 NIEAASLVFGETKEKDLLT------WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
++ A VF + + + W AMI G + G ++A++ + +M +G D
Sbjct: 318 SLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 373
Query: 400 FLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+ ++ A S ++ D + V + + + S+ G ++
Sbjct: 374 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV---VSVNNAIADAYSKCGFLEDVRKVF 430
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
++M E D V W L A + + + + AL + C
Sbjct: 431 DRMEER-DIVSWTTLVTA---YSQSSLGEEALATFC 462
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 145/308 (47%), Gaps = 19/308 (6%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ +G+ R ET ++ + + ++ ++ C++ G +R+A + G++ K N
Sbjct: 43 IVVGRNRPESIGISETYQQTQVQDLI---DVLRDCAEKGSIREAKAVHGLVLKSNFEDKD 99
Query: 235 SLI------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
++ + + + + A +F++MP++ V SWT MI G +++G F +ML
Sbjct: 100 LMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEML 159
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
++G+ + F + + +C + +LE G VH I F + T+L++MYAK G+IE
Sbjct: 160 NSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIE 219
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+ VF E + ++W AMI G +G + +A F +M P+ +++ A
Sbjct: 220 DSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVG 279
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA-----LNFINKMPETP 463
V + + + IE +V T ++++ S+ G + A NFIN TP
Sbjct: 280 KLVDVNMGKEVQNCAS-ELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTP 338
Query: 464 DFVIWGAL 471
W A+
Sbjct: 339 ----WNAM 342
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 187/319 (58%), Gaps = 6/319 (1%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A + FD +PE++ ++LWN +I+G ++G + +A LF MP ++V SW ++++G+
Sbjct: 78 ARRYFDLSPERD----IVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYAN 133
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVS 301
GD++ +F+ MPE+ V SW +I G++QNG + L F +M+D G V ND T+
Sbjct: 134 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 193
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
LSACAK+GA + G VH Y + + + AL+DMY KCG IE A VF K +
Sbjct: 194 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 253
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL++W MI GLA HG +A+ F +M SG PD F+ +L AC + G V+ L +F
Sbjct: 254 DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYF 313
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+SM D+ I P ++H VV+LLSR G + +A+ FINKMP D VIW L A + +K
Sbjct: 314 NSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 373
Query: 481 TKIAKIALQSSCSLNLSIP 499
I ++AL+ L P
Sbjct: 374 VDIGEVALEELIKLEPRNP 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLS 143
+FD +N+ +N LI+G A+N + F M+ SV PN T V + A L
Sbjct: 143 VFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLG 202
Query: 144 LLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
G+ +H G + D V+ L DMY + G A +VF K ++ W
Sbjct: 203 AFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI----KRRDLISW 258
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA 231
N +ING + G+ +A+ LF M ++
Sbjct: 259 NTMINGLAAHGHGTEALNLFHEMKNSGIS 287
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 243/487 (49%), Gaps = 42/487 (8%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
F+ ++ P+ +I ++ P + L++ L+QIHAQ++ L +++ +
Sbjct: 49 FSFCSSNTFPSISIPTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASL 108
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKN--LHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
T LI K+ A +FDH+ + + ++NV+IR ++ + Q I F+ ML L
Sbjct: 109 TASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTL 168
Query: 124 S----VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
V P+ T+ FV S + L G +H ++VKSG E + +V
Sbjct: 169 DGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVG------------ 216
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
N +IN CS + A ++F M +++V SW SL+ G
Sbjct: 217 -----------------------NSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGG 253
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFT 298
+ + G++ +A ELF MP + VSW MI+GF G +AL F ML D V N+
Sbjct: 254 YAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAV 313
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+V LSACA +GAL+ G +H YI I TAL+DMYAKCG I+ AS VF
Sbjct: 314 LVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGIC 373
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
++D+L++T+MI GL+ HG + A++ F +M+ P+ L +L C +SG V+ +
Sbjct: 374 KRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+M + I P ++H+ ++LL R G +++AL + MP PD VIW AL A R H
Sbjct: 434 ILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH 493
Query: 479 KDTKIAK 485
+ + +
Sbjct: 494 HNVNLGE 500
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 140/419 (33%), Positives = 215/419 (51%), Gaps = 48/419 (11%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A + + ++ + N LIR LA ++ + + +LR P T P + KS+
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216
Query: 140 ASLSLLSLGRGL----HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDET 190
A + RGL H VK G+ +A +RVH
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVH--------------------- 255
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
+G L A+ L + +++ +LI + R G + A
Sbjct: 256 ------------------AGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDAR 297
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF++MP + VSW+AM+NG+ Q G+ +AL +F +M GVR +D +V L+ACA++G
Sbjct: 298 ALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLG 357
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G VH Y+ N+ + +GTALVDMYAKCG ++ A VF KEK++L WT MI
Sbjct: 358 VLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIK 417
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GLA+HGR +A++ F +M G +PD F+ L AC ++G V FDSM Y I+
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P ++H+ +V+LL+R G +++A + KMP PD +IWGAL CR HK+ ++A+ ++
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVK 536
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 30/303 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LI++ + + A ++FD +N ++ ++ G + + + F M VRP+
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
V + A L +L G+ +H + + + F+ L DMY + G+ + A +VF
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
EKN VL W +I G + G +A+ELF M + V +++ + G
Sbjct: 403 VMKEKN----VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458
Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ K ELF+ M K + + M++ ++NG +A M +M
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM------------ 506
Query: 300 VSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTAL--VDMYAKCGNIEAASLVFGE 356
+ A + GAL AG R H + ++ +K I Y GNI AAS
Sbjct: 507 --PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564
Query: 357 TKE 359
+E
Sbjct: 565 ARE 567
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 17/226 (7%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q + +H + +N+ + + T L+ + + A+ +F KN+ + +I+GL
Sbjct: 360 EQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGL 419
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYD 163
A + + F M RL V+P+ + + + L+ GR L ++ K G++
Sbjct: 420 AMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPK 479
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL-- 221
+ D+ + G A ++ ++ P K + L+W L+ GC K VEL
Sbjct: 480 IEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA---LIWGALMAGCR----FHKNVELAE 532
Query: 222 ------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ P K+ ++V L + + G A E+ M EKGV
Sbjct: 533 YVVKHWIELEPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGV 577
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 244/460 (53%), Gaps = 41/460 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI-SSASLHKSIDYALSIFDHFT-P 91
+I L++ ++ K L Q HA ++ L + + + I SS+SL S+ YA S+F T P
Sbjct: 14 VIWLLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSL-YAYSLFTSLTHP 72
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
N+ ++N +IR L+ + Q +S F+F + +RP+ ++PF K+V LS G
Sbjct: 73 PNIFLYNTIIRALSLSP--QPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGL 130
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
H ++ G+ V V L MY A K+FD P
Sbjct: 131 QFHSQAIRFGLHSHLHVLVSLIRMYSS-SHISDARKLFDGIP------------------ 171
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ +NVA W +++ + + D+ A LF+ MP++ ++SWTA+I+
Sbjct: 172 ---------------LTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALIS 216
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G++ +A+A+F M V ++ T+++ LSACA++GALE G + NYI +
Sbjct: 217 GYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHR 276
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ AL+DMYAK GNI+ A L+F K K ++TWT MI GLA+HG QA++ F +M
Sbjct: 277 NVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRME 336
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+P+ F+A+L+AC + G V+LA +FF +MR Y I+P ++H+ +++LL R G +
Sbjct: 337 RDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYL 396
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+A + +MP P+ IWG+L A TH D + + L+
Sbjct: 397 QEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLK 436
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 238/462 (51%), Gaps = 43/462 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+IS++ S + + IHA+II + + +LI S S+DYA +F + + N
Sbjct: 32 LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPN 91
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
++++ +I G + +S + M+ SV P+ +V SV L + R +H
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDN----YVITSVLKACDLKVCREIHA 147
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G V + + ++Y + G+ A K+FDE
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDE------------------------ 183
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP ++ + +I+ + G +K+A ELF+ + K V WTAMI+G +
Sbjct: 184 -----------MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVR 232
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
N E KAL +F +M V AN+FT V LSAC+ +GALE G VH+++ L +
Sbjct: 233 NKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFV 292
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL++MY++CG+I A VF ++KD++++ MI GLA+HG +AI F+ M+ G
Sbjct: 293 GNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGF 352
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ +A+L AC + G + + L F+SM+ + +EP ++H+ +V+LL RVG++++A
Sbjct: 353 RPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAY 412
Query: 454 NFINKMPETPDFVIWGALFCACRTHKD----TKIAKIALQSS 491
FI +P PD ++ G L AC+ H + KIAK +S
Sbjct: 413 RFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESE 454
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 44/208 (21%)
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T++S L +C + + + +H I + L+ + + +++ A VF
Sbjct: 31 TLISVLRSCKNIAHVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYV 87
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC---------- 407
++ +TAMI G GR + + +M+++ PD V ++L AC
Sbjct: 88 SNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHA 147
Query: 408 ---------------------WYSGQVKLALNFFDSMRFDYFIEPSVKH--HTVVVNLLS 444
SG++ A FD M P H TV++N S
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEM-------PDRDHVAATVMINCYS 200
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALF 472
G + +AL + + D V W A+
Sbjct: 201 ECGFIKEALELFQDV-KIKDTVCWTAMI 227
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 108/245 (44%), Gaps = 17/245 (6%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N T ++S + + R +H+ + + S+ + LI+ S I+ A +
Sbjct: 253 ANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRV 312
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F K++ +N +I GLA + I+ F M+ RPN++T + + + LL
Sbjct: 313 FRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLL 372
Query: 146 SLGRGL-----HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+G + V+ +E+ + D+ ++G+ A++ + P + + ++
Sbjct: 373 DIGLEVFNSMKRVFNVEPQIEHYGCI----VDLLGRVGRLEEAYRFIENIP--IEPDHIM 426
Query: 201 LWNVL----INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
L +L I+G ++G + A LF + ++V L + + G K++ E+ E M
Sbjct: 427 LGTLLSACKIHGNMELGE-KIAKRLFE-SENPDSGTYVLLSNLYASSGKWKESTEIRESM 484
Query: 257 PEKGV 261
+ G+
Sbjct: 485 RDSGI 489
>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
Length = 674
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 214/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H S+ A +FD +++ + +IRG + + F+ M R V+ N T V
Sbjct: 208 HGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVV 267
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A SL G +H LI+ G E D F+ + MY + G A + F+ +K+
Sbjct: 268 LDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKD- 326
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + +A LF +MP+K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 327 ---IVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQ 383
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K VV+WTA+I+ F NG+ A+ F +M G + N T LSA A + L G
Sbjct: 384 MPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQG 443
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ H Y + A+ T+L+ MYAKCG + A VF L+ +MI H
Sbjct: 444 RQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQH 503
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F KM +G +P+ FL ILT C +G V+ N+F+SMR Y +EP+ +H
Sbjct: 504 GFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEH 563
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G + +AL IN MP+ W AL A H + AKIA Q
Sbjct: 564 YTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQ 617
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 135/267 (50%), Gaps = 11/267 (4%)
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K+ V Y A + + G R A V++E P++ + + N L+ G ++G L
Sbjct: 129 KNAVSYGAII-----SGLAKAGMLREAELVYEEMPQQWRDP--VGSNALMAGYLRVGELA 181
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A+ +F M ++V SW +++DG + G + +A +F+ MPE+ VVSWT+MI G+ + G
Sbjct: 182 MALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGM 241
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
L +F M GV+ N T+ L ACA G+++HN I F L +G +
Sbjct: 242 CSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDS 301
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
++ MY++ G + A F ++KD+++W ++I G H E+A FK M + D
Sbjct: 302 VIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLM----PQKD 357
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSM 423
+ +++ G ++ ++ F+ M
Sbjct: 358 AVSWTSMVVGFANRGWMRESVELFEQM 384
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 146/331 (44%), Gaps = 31/331 (9%)
Query: 167 RVHLADM---YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
R HL + Y + G+ R A +FD+ P ++ V+ W L+ + G L A +F
Sbjct: 38 RAHLNALLTAYGRRGRLRDAQLLFDQMPSRD----VISWTALLTAYADGGDLASARLVFD 93
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKA 280
MP++N SW +L+ ++R + A LF +MP K VS+ A+I+G ++ G EAE
Sbjct: 94 DMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELV 153
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
Q V +N + ++ +VG L +RV ++ D +A+VD
Sbjct: 154 YEEMPQQWRDPVGSN-----ALMAGYLRVGELAMALRVFEGMTVRDV----ISWSAMVDG 204
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
K G++ A VF E+ +++WT+MI G G + F M G + + T
Sbjct: 205 LCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTL 264
Query: 401 LAILTACWYSGQVKLAL---NFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+L AC + + + N SM F D F+ S V+ + SR G + A
Sbjct: 265 SVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDS------VIIMYSRFGWMADAQRA 318
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKI 486
N M + D V W +L H + A +
Sbjct: 319 FNCM-QQKDIVSWNSLITGYVQHDMVEEAHV 348
>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
Length = 839
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A S+FD T +N+ + +I G + F+ F+ M + V+ N T + K+
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G +H L+ + +E+D F+ L MY +LG A VF K+ +
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS----V 342
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI G + + +A ELF MP K++ SW +I GF KG++ K ELF MPEK
Sbjct: 343 SWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKD 402
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++WTAMI+ F NG E+AL F +ML V N +T S LSA A + L G+++H
Sbjct: 403 NITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHG 462
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + ++ +LV MY KCGN A +F E +++++ MI G + +G ++
Sbjct: 463 RVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKK 522
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F + SG EP+G FLA+L+AC + G V L +F SM+ Y IEP H+ +V
Sbjct: 523 ALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMV 582
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +D A N I+ MP P +WG+L A +TH +A++A
Sbjct: 583 DLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELA 629
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 18/324 (5%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
IS + + ++ A +IF + +++ + +I AEN F M P R
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM------PVR 110
Query: 130 LTYPFVSKSVASL-SLLSLGRG--LHCLIV-KSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+T + + A + + LG+ L C I K+ V Y + +V+ G+ A
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMI-----TGFVRAGRFDEAEF 165
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
++ ETP K + + NVL++G + G +AV +F M K V S S++ G+ + G
Sbjct: 166 LYAETPVKFRDS--VASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGR 223
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALS 304
+ A LF++M E+ V++WTAMI+G+ + G E +F +M G V+ N T+
Sbjct: 224 IVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFK 283
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC G ++H +S +G +L+ MY+K G + A VFG K KD ++
Sbjct: 284 ACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS 343
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
W ++I GL + +A + F+KM
Sbjct: 344 WNSLITGLVQRKQISEAYELFEKM 367
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 47/312 (15%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S ++ N I+ ++ G L++A +F M +++ SW+++I + G + KA ++F++
Sbjct: 47 STAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDE 106
Query: 256 MPEKGVVSWTAMINGFSQN----GEA--------EKALAMFFQMLDAGVRANDFTVVSAL 303
MP + S+ AMI +N G+A EK + M+ VRA F L
Sbjct: 107 MPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 304 SACAKV-------------GALEAG-----VRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
A V G L AG VRV ++ + +++V Y K G
Sbjct: 167 YAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEV----VSCSSMVHGYCKMG 222
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL- 404
I A +F E++++TWTAMI G G +E F +M G + LA++
Sbjct: 223 RIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMF 282
Query: 405 TAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
AC + G L + FD F+ S ++++ S++G + +A M
Sbjct: 283 KACRDFVRYREGSQIHGLVSRMPLEFDLFLGNS------LMSMYSKLGYMGEAKAVFGVM 336
Query: 460 PETPDFVIWGAL 471
+ D V W +L
Sbjct: 337 -KNKDSVSWNSL 347
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 13/223 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I S I + +F K+ + +I N +++ + F ML+ V
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V + ASL+ L G +H +VK + D V+ L MY + G T A+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E N ++ +N +I+G S G+ +KA++LF M+ + N ++++L+ +
Sbjct: 496 FSCISEPN----IVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVH 551
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
G + + F+ M E G + M++ ++G + A
Sbjct: 552 VGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDA 594
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/522 (29%), Positives = 250/522 (47%), Gaps = 64/522 (12%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
LR Q +L F SSR +SS + A + + N+H +N +I LA
Sbjct: 1069 LRVAEDQFLLG--FPSSRRRPVSLSS-------NLATWFYKYVDKSNVHSWNSVIADLAR 1119
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ F + +L + P R ++P KS ++L L GR H G E D FV
Sbjct: 1120 GGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFV 1179
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------ 208
L DMY + G+ + A +FDE P +N V+ W +I G
Sbjct: 1180 SSALIDMYSKCGQLKDARALFDEIPLRN----VVSWTSMITGYVQNEQADNALLLFKDFL 1235
Query: 209 -------------------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDG 239
CS++ + G + KK + +L+D
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFT 298
+ + G + ++F+ M EK +SW +MI ++Q+G + +AL +F M+ GVR N T
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ + L ACA GAL AG +H+ + D +GT+++DMY KCG +E A F K
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
EK++ +WTAM+ G +HGR ++A+ F KM+ +G +P+ F+++L AC ++G V+ +
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+F++M+ Y IEP ++H+ +V+L R G +++A N I +M PDFV+WG+L ACR H
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 1535
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
K+ + +IA Q L+ P Y D W +
Sbjct: 1536 KNVDLGEIAAQKLFELD---PDNCGYYVLLSNLYADAGRWAD 1574
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 219/444 (49%), Gaps = 37/444 (8%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T + P+ NI + P NI + L+ + + K LRQIHA+II L +T +L
Sbjct: 8 THDVFPSKNIPLT--PRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKL 65
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
I S H I YA+ +F +N++IR N + + + M+ + ++
Sbjct: 66 IHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADK 125
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T+PFV K+ + + LG+ +H ++K G D FV+ +L D Y + G TR A KVF
Sbjct: 126 FTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF-- 183
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
EK + +V+ W +I+G G L++A +F +P KNV SW ++I+G++R
Sbjct: 184 --EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR------- 234
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
N + E+AL +F +M + N++T+VS + AC ++
Sbjct: 235 ------------------------NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G L G +H+Y N + +GTAL+DMY+KCG+I+ A VF K L TW +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
L +HG ++A+ F +M +PD F+ +L AC + VK +F M Y I
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390
Query: 430 EPSVKHHTVVVNLLSRVGQVDKAL 453
P +H+ + L +R +D+A
Sbjct: 391 APIPEHYECMTELYARSNNLDEAF 414
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T + ++ + + + + IH Q+I +L + + T +I ++ A F
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 1411
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D KN+ + ++ G + + + F M+R V+PN +T+ V + + L+
Sbjct: 1412 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVE 1471
Query: 147 LG-----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
G H ++ G+E+ + D++ + G A+ + K ++
Sbjct: 1472 EGWHWFNAMKHKYDIEPGIEHYGC----MVDLFGRAGCLNEAYNLIKRMKMK---PDFVV 1524
Query: 202 WNVLINGC 209
W L+ C
Sbjct: 1525 WGSLLGAC 1532
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 267/539 (49%), Gaps = 76/539 (14%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-- 78
+SH+P + + II L+ S ++ + +IHA++I +S +TT+++ + + +
Sbjct: 6 NSHQPC---SISSIIQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPY 62
Query: 79 -IDYALSIFDH-----FTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
++A +F F P K+ ++N++I+ + + + F ML + ++
Sbjct: 63 LAEFARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDK 122
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----------------AFVRV---- 168
++ V K+ + L L G +H + K+G+ D F R
Sbjct: 123 FSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDR 182
Query: 169 ----------HLADMYVQLGKTRGAFKVFDETPEKNKS---------------------- 196
+ D Y++ G A ++FD P + K+
Sbjct: 183 MPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIAS 242
Query: 197 --------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+ ++ WN LI G K G + A +LF +MP+++V +W ++IDG+ + G + K
Sbjct: 243 KLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHK 302
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
A LF+QMP + VV++ +M+ G+ QN +AL +F M ++ + ++ T+V LSA A
Sbjct: 303 AKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIA 362
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
++G L + +H YI F L G +G AL+DMY+KCG+I+ A VF + K + W A
Sbjct: 363 QLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNA 422
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI GLAIHG E A ++ EPD F+ +L AC +SG VK L F+ MR +
Sbjct: 423 MIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKH 482
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
IEP ++H+ +V+LLSR G ++ A N I +MP P+ VIW AC HK+ +I ++
Sbjct: 483 KIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGEL 541
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRL-TTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V NR A+ +++ K SH + T ++S I + +H I+
Sbjct: 322 MAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQ 381
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+ ++ LI S SI A+ +F+ K++ +N +I GLA + +S + +
Sbjct: 382 FYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILL 441
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYV 175
+ R S+ P+ +T+ V + + L+ GL C + K +E + D+
Sbjct: 442 EIERRSIEPDYITFVGVLNACSHSGLVK--EGLLCFELMRRKHKIEPRLQHYGCMVDLLS 499
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G A + +E P E N ++W + C+
Sbjct: 500 RCGSIELAKNLIEEMPIEPND----VIWRTFLTACN 531
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 240/442 (54%), Gaps = 40/442 (9%)
Query: 54 IILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAEN-SHFQ 111
++L L + + ++ I + S YA S+F T +++++N +I+ L+ + +H +
Sbjct: 1 MLLRALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPK 60
Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
+ I + + +RP+ ++PF K+V S + GR LH ++ G+ D V
Sbjct: 61 ASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFV 120
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM-MPKKNV 230
MY G +GC I RK + GM M +V
Sbjct: 121 QMYSSFG----------------------------SGC--ICDARKMFD--GMSMSTGDV 148
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
A W ++++G+ + GDL A +LFE+MP++ V+SWTA+I G++Q A+A+F +M
Sbjct: 149 ALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLE 208
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNI 347
V ++ ++ AL+ACA++GALE G + +YI + GL + AL+DMYAK G+I
Sbjct: 209 NVEPDEIAMLVALTACARLGALELGEWIRHYI--DRLGLLTTNIPLNNALIDMYAKSGDI 266
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
++A VF K ++TWT MI GLA+HG +A++ F +M + +P+ F+AIL+AC
Sbjct: 267 KSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSAC 326
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G V+ +F+ M Y IEP ++H+ +++LL R G + +A + +MP P+ VI
Sbjct: 327 SHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVI 386
Query: 468 WGALFCACRTHKDTKIAKIALQ 489
WG+L AC TH D ++ ++ALQ
Sbjct: 387 WGSLLAACNTHGDPELGELALQ 408
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 250/498 (50%), Gaps = 54/498 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--P 91
+++++ + + +Q+HA++I+H + + L ++ +D+A S F+
Sbjct: 10 LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-----NRLTYPFVSKSVASLSLLS 146
+N H +N ++ G +++ ++C V +L +R + F K+ L LL
Sbjct: 70 RNRHSWNTILSGYSKS---KTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLE 126
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H L +K+G++ D +V L +MY QLG A KVFDE P +N +LW VL+
Sbjct: 127 NGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS----VLWGVLM 182
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA--------------------------------SWV 234
G K + LF +M +A S++
Sbjct: 183 KGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFI 242
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
S+ID +++ L A +LFE ++ VV WT +I+GF++ A +A +F Q
Sbjct: 243 DQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML + N T+ + L +C+ +G+L G VH Y+ N + T+ +DMYA+CGN
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A VF E+++++W++MI I+G +E+A+ F KM P+ F+++L+A
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +SG VK F+SM DY + P +H+ +V+LL R G++ +A +FI+ MP P
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482
Query: 467 IWGALFCACRTHKDTKIA 484
WGAL ACR HK+ +A
Sbjct: 483 AWGALLSACRIHKEVDLA 500
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 31/271 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +F+ +N+ ++ LI G A+ F MLR S+ PN+ T + S
Sbjct: 262 LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVS 321
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+SL L G+ +H ++++G+E DA DMY + G + A VFD PE+N
Sbjct: 322 CSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERN---- 377
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
V+ W+ +IN G +A++ F M +NV ++VSL+ G++K+ + FE
Sbjct: 378 VISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFE 437
Query: 255 QMP-EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + GVV + M++ + GE +A + ++ V SA
Sbjct: 438 SMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFI----------DNMPVKPMASA---W 484
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
GAL + R+H + L G I L+ M
Sbjct: 485 GALLSACRIHKEVD-----LAGEIAEKLLSM 510
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 225/451 (49%), Gaps = 45/451 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+S + I+ A +FD +N+ + ++RG + + F M +V
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV--- 222
Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
VS +V LL GR C + E D R ++ Y Q+G+ A +F
Sbjct: 223 ------VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE P +N V+ W +I G + + A +LF +MP+KN SW +++ G+ G L
Sbjct: 277 DEMPRRN----VVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLD 332
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-------------------- 287
+A ELF MP K VV+ AMI F QNGE KA +F QM
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392
Query: 288 -LDA----------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
LDA G+R N +++S LS CA + L+ G +H + + F L + +
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+ MY KCGN+ A VF KD++ W ++I G A HG +A++ F M +SG PD
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+ +L+AC Y+G VK L F+SM Y +E ++H+ +V+LL R G++++A++ I
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
KMP D +IWGAL ACRTH +A++A
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVA 603
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 22/306 (7%)
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
R L Y +LG+ A VFDE +KN ++ WN ++ G + ++A +F M
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKN----IISWNSIVAGYFQNKRPQEAQNMFDKMS 156
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++N SW L+ G++ G + +A E+F++MPE+ VVSWTAM+ G+ + G +A +F+Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M + V + +TV+ L + G ++ R+ + + D + T ++ Y + G
Sbjct: 217 MPEKNVVS--WTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGR 268
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ A ++F E +++++WT MI G + + + A + F ++M E T L T
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF-EVMPEKNEVSWTAMLKGYTN 327
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C G++ A F++M SV ++ + G+V KA ++M E D
Sbjct: 328 C---GRLDEASELFNAMPI-----KSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEG 378
Query: 467 IWGALF 472
W A+
Sbjct: 379 TWSAMI 384
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 57/351 (16%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + +I G +N F M N +++ + K +
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTN 327
Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L L + + +KS V +A + + Q G+ A +VFD+ EK++
Sbjct: 328 CGRLDEASELFNAMPIKSVVACNAMILC-----FGQNGEVPKARQVFDQMREKDEG---- 378
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS--------------------- 235
W+ +I + G A+ELF MM ++ N S +S
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438
Query: 236 --------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
L+ +++ G+L KA ++F++ K VV W ++I G++Q+G +AL
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEAL 498
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
+F M +G+ +D T V LSAC+ G ++ G+ + N + + ++ I +VD
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME-TKYQVEQKIEHYACMVD 557
Query: 340 MYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ + G + EA L+ E D + W A++ H + + A KK++
Sbjct: 558 LLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 48 RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
R+IHAQ++ +++ +S + + I +L K A +FD F K++ ++N +I G
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK----AKQVFDRFAVKDVVMWNSIITG 487
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEY 162
A++ + F M + P+ +T+ V + + + G + + + K VE
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAV 219
+ D+ + GK A + ++ P + + ++W L+ C K+ A
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA---IIWGALLGACRTHMKLDLAEVAA 604
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ ++ KN ++ L + + +G EL M ++ V
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646
>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
gb|AF151215 and contains multiple PPR PF|01535 repeats
[Arabidopsis thaliana]
Length = 816
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A S+FD T +N+ + +I G + F+ F+ M + V+ N T + K+
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G +H L+ + +E+D F+ L MY +LG A VF K+ +
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS----V 342
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI G + + +A ELF MP K++ SW +I GF KG++ K ELF MPEK
Sbjct: 343 SWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKD 402
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++WTAMI+ F NG E+AL F +ML V N +T S LSA A + L G+++H
Sbjct: 403 NITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHG 462
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + ++ +LV MY KCGN A +F E +++++ MI G + +G ++
Sbjct: 463 RVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKK 522
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F + SG EP+G FLA+L+AC + G V L +F SM+ Y IEP H+ +V
Sbjct: 523 ALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMV 582
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +D A N I+ MP P +WG+L A +TH +A++A
Sbjct: 583 DLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELA 629
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 18/324 (5%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
IS + + ++ A +IF + +++ + +I AEN F M P R
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM------PVR 110
Query: 130 LTYPFVSKSVASL-SLLSLGRG--LHCLIV-KSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+T + + A + + LG+ L C I K+ V Y + +V+ G+ A
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMI-----TGFVRAGRFDEAEF 165
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
++ ETP K + + NVL++G + G +AV +F M K V S S++ G+ + G
Sbjct: 166 LYAETPVKFRDS--VASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGR 223
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALS 304
+ A LF++M E+ V++WTAMI+G+ + G E +F +M G V+ N T+
Sbjct: 224 IVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFK 283
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC G ++H +S +G +L+ MY+K G + A VFG K KD ++
Sbjct: 284 ACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS 343
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
W ++I GL + +A + F+KM
Sbjct: 344 WNSLITGLVQRKQISEAYELFEKM 367
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 47/312 (15%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S ++ N I+ ++ G L++A +F M +++ SW+++I + G + KA ++F++
Sbjct: 47 STAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDE 106
Query: 256 MPEKGVVSWTAMINGFSQN----GEA--------EKALAMFFQMLDAGVRANDFTVVSAL 303
MP + S+ AMI +N G+A EK + M+ VRA F L
Sbjct: 107 MPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 304 SACAKV-------------GALEAG-----VRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
A V G L AG VRV ++ + +++V Y K G
Sbjct: 167 YAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEV----VSCSSMVHGYCKMG 222
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL- 404
I A +F E++++TWTAMI G G +E F +M G + LA++
Sbjct: 223 RIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMF 282
Query: 405 TAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
AC + G L + FD F+ S ++++ S++G + +A M
Sbjct: 283 KACRDFVRYREGSQIHGLVSRMPLEFDLFLGNS------LMSMYSKLGYMGEAKAVFGVM 336
Query: 460 PETPDFVIWGAL 471
+ D V W +L
Sbjct: 337 -KNKDSVSWNSL 347
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 13/223 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I S I + +F K+ + +I N +++ + F ML+ V
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V + ASL+ L G +H +VK + D V+ L MY + G T A+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E N ++ +N +I+G S G+ +KA++LF M+ + N ++++L+ +
Sbjct: 496 FSCISEPN----IVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVH 551
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
G + + F+ M E G + M++ ++G + A
Sbjct: 552 VGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDA 594
>gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600
gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana]
gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana]
gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 534
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 241/451 (53%), Gaps = 18/451 (3%)
Query: 48 RQIHAQIILHNLFASSRITTQLIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R +HA ++ + +RI +L++ K +D A +FD +++ V+I A
Sbjct: 36 RVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLD-ARKVFDEMPKRDISGCVVMIGACAR 94
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N ++Q + F M + ++ + P + K+ +L G+ +HCL++K E DAF+
Sbjct: 95 NGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFI 154
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CSKIGYLRKAVE 220
L DMY + G+ A KVF + E++ ++++N +I+G + L K ++
Sbjct: 155 VSSLIDMYSKFGEVGNARKVFSDLGEQD----LVVFNAMISGYANNSQADEALNLVKDMK 210
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGE 276
L G+ P +V +W +LI GF + +K E+ E M G VVSWT++I+G N +
Sbjct: 211 LLGIKP--DVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQ 268
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
EKA F QML G+ N T+++ L AC + ++ G +H Y G + +A
Sbjct: 269 NEKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSA 328
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMY KCG I A ++F +T +K +T+ +MI+ A HG ++A++ F +M +G + D
Sbjct: 329 LLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLD 388
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F AILTAC ++G L N F M+ Y I P ++H+ +V+LL R G++ +A I
Sbjct: 389 HLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMI 448
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
M PD +WGAL ACR H + ++A+IA
Sbjct: 449 KAMRMEPDLFVWGALLAACRNHGNMELARIA 479
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 83/373 (22%)
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L GR LH +V SG+ + L YV+ GK A KVFDE P+++ S V
Sbjct: 31 LFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCV---- 86
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKN-------VASWV---------------------- 234
V+I C++ GY +++++ F M K V S +
Sbjct: 87 VMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKF 146
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
SLID + + G++ A ++F + E+ +V + AMI+G++ N +A++AL +
Sbjct: 147 SYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLV 206
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M G++ + T + +S + +R +S
Sbjct: 207 KDMKLLGIKPDVITWNALISGFSH-------MRNEEKVS--------------------- 238
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
E L+ + + D+++WT++I GL + + E+A FK+M+ G P+ + +L
Sbjct: 239 ---EILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLL 295
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHH----TVVVNLLSRVGQVDKALNFINKMP 460
AC +K Y + ++ H + ++++ + G + +A+ K P
Sbjct: 296 PACTTLAYMKHGKEI-----HGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTP 350
Query: 461 ETPDFVIWGALFC 473
+ +FC
Sbjct: 351 KKTTVTFNSMIFC 363
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 225/451 (49%), Gaps = 45/451 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+S + I+ A +FD +N+ + ++RG + + F M +V
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV--- 222
Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
VS +V LL GR C + E D R ++ Y Q+G+ A +F
Sbjct: 223 ------VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE P +N V+ W +I G + + A +LF +MP+KN SW +++ G+ G L
Sbjct: 277 DEMPRRN----VVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLD 332
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-------------------- 287
+A ELF MP K VV+ AMI F QNGE KA +F QM
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392
Query: 288 -LDA----------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
LDA G+R N +++S LS CA + L+ G +H + + F L + +
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+ MY KCGN+ A VF KD++ W ++I G A HG +A++ F M +SG PD
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+ +L+AC Y+G VK L F+SM Y +E ++H+ +V+LL R G++++A++ I
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
KMP D +IWGAL ACRTH +A++A
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVA 603
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 22/306 (7%)
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
R L Y +LG+ A VFDE +KN ++ WN ++ G + ++A +F M
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKN----IISWNSIVAGYFQNKRPQEAQNMFDKMS 156
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++N SW L+ G++ G + +A E+F++MPE+ VVSWTAM+ G+ + G +A +F+Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M + V + +TV+ L + G ++ R+ + + D + T ++ Y + G
Sbjct: 217 MPEKNVVS--WTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGR 268
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ A ++F E +++++WT MI G + + + A + F ++M E T L T
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF-EVMPEKNEVSWTAMLKGYTN 327
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C G++ A F++M SV ++ + G+V KA ++M E D
Sbjct: 328 C---GRLDEASELFNAMPI-----KSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEG 378
Query: 467 IWGALF 472
W A+
Sbjct: 379 TWSAMI 384
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 57/351 (16%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + +I G +N F M N +++ + K +
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTN 327
Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L L + + +KS V +A + + Q G+ A +VFD+ EK++
Sbjct: 328 CGRLDEASELFNAMPIKSVVACNAMILC-----FGQNGEVPKARQVFDQMREKDEG---- 378
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS--------------------- 235
W+ +I + G A+ELF MM ++ N S +S
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438
Query: 236 --------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
L+ +++ G+L KA ++F++ K VV W ++I G++Q+G +AL
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEAL 498
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
+F M +G+ +D T V LSAC+ G ++ G+ + N + + ++ I +VD
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME-TKYQVEQKIEHYACMVD 557
Query: 340 MYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ + G + EA L+ E D + W A++ H + + A KK++
Sbjct: 558 LLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 48 RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
R+IHAQ++ +++ +S + + I +L K A +FD F K++ ++N +I G
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK----AKQVFDRFAVKDVVMWNSIITG 487
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEY 162
A++ + F M + P+ +T+ V + + + G + + + K VE
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAV 219
+ D+ + GK A + ++ P + + ++W L+ C K+ A
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA---IIWGALLGACRTHMKLDLAEVAA 604
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ ++ KN ++ L + + +G EL M ++ V
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646
>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g53600, mitochondrial; Flags: Precursor
gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 717
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A S+FD T +N+ + +I G + F+ F+ M + V+ N T + K+
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G +H L+ + +E+D F+ L MY +LG A VF K+ +
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS----V 342
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI G + + +A ELF MP K++ SW +I GF KG++ K ELF MPEK
Sbjct: 343 SWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKD 402
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++WTAMI+ F NG E+AL F +ML V N +T S LSA A + L G+++H
Sbjct: 403 NITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHG 462
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + ++ +LV MY KCGN A +F E +++++ MI G + +G ++
Sbjct: 463 RVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKK 522
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F + SG EP+G FLA+L+AC + G V L +F SM+ Y IEP H+ +V
Sbjct: 523 ALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMV 582
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +D A N I+ MP P +WG+L A +TH +A++A
Sbjct: 583 DLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELA 629
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 16/323 (4%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
IS + + ++ A +IF + +++ + +I AEN F M P R
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM------PVR 110
Query: 130 LTYPFVSKSVASL-SLLSLGRG--LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+T + + A + + LG+ L C I E +A + +V+ G+ A +
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIP----EKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
+ ETP K + + NVL++G + G +AV +F M K V S S++ G+ + G +
Sbjct: 167 YAETPVKFRDS--VASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRI 224
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSA 305
A LF++M E+ V++WTAMI+G+ + G E +F +M G V+ N T+ A
Sbjct: 225 VDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKA 284
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
C G ++H +S +G +L+ MY+K G + A VFG K KD ++W
Sbjct: 285 CRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 366 TAMIWGLAIHGRYEQAIQYFKKM 388
++I GL + +A + F+KM
Sbjct: 345 NSLITGLVQRKQISEAYELFEKM 367
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 47/312 (15%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S ++ N I+ ++ G L++A +F M +++ SW+++I + G + KA ++F++
Sbjct: 47 STAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDE 106
Query: 256 MPEKGVVSWTAMINGFSQN----GEA--------EKALAMFFQMLDAGVRANDFTVVSAL 303
MP + S+ AMI +N G+A EK + M+ VRA F L
Sbjct: 107 MPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 304 SACAKV-------------GALEAG-----VRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
A V G L AG VRV ++ + +++V Y K G
Sbjct: 167 YAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEV----VSCSSMVHGYCKMG 222
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL- 404
I A +F E++++TWTAMI G G +E F +M G + LA++
Sbjct: 223 RIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMF 282
Query: 405 TAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
AC + G L + FD F+ S ++++ S++G + +A M
Sbjct: 283 KACRDFVRYREGSQIHGLVSRMPLEFDLFLGNS------LMSMYSKLGYMGEAKAVFGVM 336
Query: 460 PETPDFVIWGAL 471
+ D V W +L
Sbjct: 337 -KNKDSVSWNSL 347
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 13/223 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I S I + +F K+ + +I N +++ + F ML+ V
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V + ASL+ L G +H +VK + D V+ L MY + G T A+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E N ++ +N +I+G S G+ +KA++LF M+ + N ++++L+ +
Sbjct: 496 FSCISEPN----IVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVH 551
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
G + + F+ M E G + M++ ++G + A
Sbjct: 552 VGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDA 594
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 187/319 (58%), Gaps = 6/319 (1%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A + FD +PE++ ++LWN +I+G ++G + +A LF MP ++V SW ++++G+
Sbjct: 25 ARRYFDLSPERD----IVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYAN 80
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVS 301
GD++ +F+ MPE+ V SW +I G++QNG + L F +M+D G V ND T+
Sbjct: 81 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 140
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
LSACAK+GA + G VH Y + + + AL+DMY KCG IE A VF K +
Sbjct: 141 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 200
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL++W MI GLA HG +A+ F +M SG PD F+ +L AC + G V+ L +F
Sbjct: 201 DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYF 260
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+SM D+ I P ++H VV+LLSR G + +A+ FINKMP D VIW L A + +K
Sbjct: 261 NSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 320
Query: 481 TKIAKIALQSSCSLNLSIP 499
I ++AL+ L P
Sbjct: 321 VDIGEVALEELIKLEPRNP 339
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLS 143
+FD +N+ +N LI+G A+N + F M+ SV PN T V + A L
Sbjct: 90 VFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLG 149
Query: 144 LLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
G+ +H G + D V+ L DMY + G A +VF K ++ W
Sbjct: 150 AFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI----KRRDLISW 205
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA 231
N +ING + G+ +A+ LF M ++
Sbjct: 206 NTMINGLAAHGHGTEALNLFHEMKNSGIS 234
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 239/468 (51%), Gaps = 15/468 (3%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQI-ILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
+TE ++ + K L+++H++I I H+L ++ + +L+ + ++ IFD
Sbjct: 36 LTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 95
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
KN+ FNV+IR N + + F M + P+ TYP V K+ + L +
Sbjct: 96 EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 155
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H +V+ G++ + FV L MY + G A +V D+ P ++ V+ WN L+
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRD----VVSWNSLVA 211
Query: 208 GCSKIGYLRKAVE------LFGMMPKKNVASWVSLIDGFMRK--GDLKKAGELFEQMPEK 259
GC++ G A+E L G+ P + + SL+ ++ E+F ++ K
Sbjct: 212 GCARNGQFDDALEVCKEMELLGLKP--DAGTMASLLPAVTNTCLDNVSFVKEMFMKLANK 269
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+VSW MI + N +A+ +F QM D V + ++ S L AC + AL G R+H
Sbjct: 270 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 329
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
Y+ + AL+DMYAKCG +E A VF + K +D+++WT+MI ++G+
Sbjct: 330 EYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGR 389
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
A+ F +M G PD F+++L+AC ++G + +F M + I P ++H +
Sbjct: 390 DAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCM 449
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V+LL R GQVD+A FI +MP P+ +WGAL ACR + + I +A
Sbjct: 450 VDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLA 497
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 229/484 (47%), Gaps = 84/484 (17%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D AL +F ++L +N LI GL+ H + + + YP SV
Sbjct: 65 DAALRVFHRMPTRDLASYNALISGLSLRRHT---------LPDAAAALATIPYP---PSV 112
Query: 140 ASLSLLSLGRGLHCLIV------KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
S + L G H L+ + E + L ++ G+ A K+FDE P K
Sbjct: 113 VSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAK 172
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
+ V+ W +++G ++G + +A LF MPK+NV SW +++ G+ + G + A +LF
Sbjct: 173 D----VVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLF 228
Query: 254 EQMPEKGVVSWTA-------------------------------MINGFSQNGEAE---- 278
E MPE+ VSWTA MI GF Q G +
Sbjct: 229 EVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKS 288
Query: 279 ---------------------------KALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+AL+ F +ML G+R N +V+S L+ CA +
Sbjct: 289 VFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAV 348
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
L+ G VH + F + +AL+ MY KCGN++ A VF + KD++ W +MI G
Sbjct: 349 LDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITG 408
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
A HG E+A+ F M +G PDG ++ LTAC Y+G+VK + F+SMR I+P
Sbjct: 409 YAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKP 468
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
++H+ +V+LL R G VD+AL I MP PD VIWGAL ACR HK+ +IA+I+ +
Sbjct: 469 GLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKL 528
Query: 492 CSLN 495
L
Sbjct: 529 LELE 532
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A S+FD ++ ++ +I+ +N +S F ML + +RPN + +
Sbjct: 283 VDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTV 342
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A+L++L GR +H +++ + D + L MY++ G A +VF K+
Sbjct: 343 CAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKD---- 398
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
V++WN +I G ++ G +A+ +F GM+P + +++ + G +K+ ++
Sbjct: 399 VVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVP--DGITYIGALTACSYTGKVKEGRDI 456
Query: 253 FEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
F M K G+ + M++ + G ++AL + M
Sbjct: 457 FNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTM 496
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 31/278 (11%)
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
+ + +V+ N I ++ G + A F MP + AS+ +L+ G+ R A +F
Sbjct: 12 SSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVF 71
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+MP + + S+ A+I+G S A + FT S L + G L
Sbjct: 72 HRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFT--SLLRGYVRHGLLA 129
Query: 314 AGVRV------HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+++ N+IS T L+ + G ++ A +F E KD++ WTA
Sbjct: 130 DAIQLFRQMPERNHISY----------TVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTA 179
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRF 425
M+ G GR ++A F +M P V + A+++ +GQV LA F+ M
Sbjct: 180 MLSGYCQVGRVDEARTLFDEM------PKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP- 232
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
E + T ++ + G+++ A N MP+ P
Sbjct: 233 ----ERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHP 266
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 145/488 (29%), Positives = 237/488 (48%), Gaps = 58/488 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +HAQI++ ++T L++ + SI+ + +F+ T N +N +I G N
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 300
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
FV M + PN T VSK+V L +++G+ + + G+E + V
Sbjct: 301 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVG 360
Query: 168 VHLADMYVQLGKTRGAFKVFD--------ETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
L DMY + G A VFD TP WN +I+G S+ G ++A+
Sbjct: 361 TALIDMYSKCGSLHDARSVFDTNFINCGVNTP----------WNAMISGYSQSGCSQEAL 410
Query: 220 ELFGMMPKKNVASWV----------------------------------------SLIDG 239
EL+ M + + S + ++ D
Sbjct: 411 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 470
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G L+ ++F++M E+ +VSWT ++ +SQ+ E+ALA F M + G N FT
Sbjct: 471 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 530
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S L +CA + LE G +VH + + I +AL+DMYAKCG+I A VF +
Sbjct: 531 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISN 590
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
D+++WTA+I G A HG E A+Q F++M SG + + L +L AC + G V+ L +
Sbjct: 591 PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFY 650
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F M Y + P ++H+ +++LL RVG++D A+ FI KMP P+ ++W L CR H
Sbjct: 651 FQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHG 710
Query: 480 DTKIAKIA 487
+ ++ +IA
Sbjct: 711 NVELGEIA 718
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/445 (25%), Positives = 195/445 (43%), Gaps = 60/445 (13%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + V+I G E+ F F ML + P++ Y + +S
Sbjct: 174 ACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 233
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L LG+ +H IV G FV L +MY +LG ++ VF+ E N+ +
Sbjct: 234 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ----VS 289
Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----------------------------------- 226
WN +I+GC+ G +A +LF M
Sbjct: 290 WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCAS 349
Query: 227 ----KKNVASWVSLIDGFMRKGDLKKAGELFE-QMPEKGV-VSWTAMINGFSQNGEAEKA 280
+ NV +LID + + G L A +F+ GV W AMI+G+SQ+G +++A
Sbjct: 350 ELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEA 409
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVD 339
L ++ QM G+ ++ +T S +A A +L+ G VH + C + ++ A+ D
Sbjct: 410 LELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIAD 469
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
Y+KCG +E VF +E+D+++WT ++ + E+A+ F M G P+
Sbjct: 470 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 529
Query: 400 FLAILTACW------YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
F ++L +C Y QV L + E ++ + ++++ ++ G + +A
Sbjct: 530 FSSVLISCASLCFLEYGRQVHGLL-----CKAGLDTEKCIE--SALIDMYAKCGSITEAG 582
Query: 454 NFINKMPETPDFVIWGALFCACRTH 478
+K+ PD V W A+ H
Sbjct: 583 KVFDKIS-NPDIVSWTAIISGYAQH 606
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 170/396 (42%), Gaps = 69/396 (17%)
Query: 149 RGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+ +H L++KS E + + H A +Y + + R A VFDE P++N V W V+I
Sbjct: 138 KAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRN----VFSWTVMI 193
Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWV-------------------------- 234
G ++ G + F G++P K S +
Sbjct: 194 VGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFA 253
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
SL++ + + G ++ + +F M E VSW AMI+G + NG +A +F +M
Sbjct: 254 THIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 313
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCG 345
+ N +T+VS A K+ + G V N S + G++G +GTAL+DMY+KCG
Sbjct: 314 KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCAS--ELGIEGNVLVGTALIDMYSKCG 371
Query: 346 NIEAASLVFGETKEKDLLT------WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
++ A VF + + + W AMI G + G ++A++ + +M +G D
Sbjct: 372 SLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 427
Query: 400 FLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+ ++ A S ++ D + V + + + S+ G ++
Sbjct: 428 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV---VSVNNAIADAYSKCGFLEDVRKVF 484
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
++M E D V W L A + + + + AL + C
Sbjct: 485 DRMEER-DIVSWTTLVTA---YSQSSLGEEALATFC 516
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 145/308 (47%), Gaps = 19/308 (6%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ +G+ R ET ++ + + ++ ++ C++ G +R+A + G++ K N
Sbjct: 97 IVVGRNRPESIGISETYQQTQVQDLI---DVLRDCAEKGSIREAKAVHGLVLKSNFEDKD 153
Query: 235 SLI------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
++ + + + + A +F++MP++ V SWT MI G +++G F +ML
Sbjct: 154 LMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEML 213
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
++G+ + F + + +C + +LE G VH I F + T+L++MYAK G+IE
Sbjct: 214 NSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIE 273
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+ VF E + ++W AMI G +G + +A F +M P+ +++ A
Sbjct: 274 DSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVG 333
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA-----LNFINKMPETP 463
V + + + IE +V T ++++ S+ G + A NFIN TP
Sbjct: 334 KLVDVNMGKEVQNCAS-ELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTP 392
Query: 464 DFVIWGAL 471
W A+
Sbjct: 393 ----WNAM 396
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 217/409 (53%), Gaps = 41/409 (10%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
MLR PN T+PF KS A+LSL G+ LHC + K+G + FV+ L MY +
Sbjct: 1 MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60
Query: 180 TRGAFKVFDETPEKNK------------------SESVLLW------NVLINGCSKIGYL 215
A K+FDE P+ K + V+L+ V ING + +G +
Sbjct: 61 IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120
Query: 216 RKA---------------VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
+ FG+ +V + L+ +++ G++ +LF++MP KG
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGN--CLLTMYVKSGEIDCGRKLFDEMPRKG 178
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+++W AMING++QNG A L ++ +M G + T+V LS+CA +GAL G V
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ F + ALV+MYA+CGN++ A +F K +++WTA+I G +HG+ E
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEV 298
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ F +M+ G +PDGT F+++L+AC ++G L++F M Y + P +H++ +V
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+LL R G++++A I M D +WGAL AC+ H++ ++A++A +
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFE 407
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 178/403 (44%), Gaps = 53/403 (13%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
+Q+H + + T LIS ID A +FD P++ + +N L+ G
Sbjct: 30 KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDE-NPQSRKLTVCYNSLLSGY 88
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
A NS + + F M L V N +T + + L LG +H VK G++ D+
Sbjct: 89 ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDS 148
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
V L MYV+ G+ K+FDE P K ++ WN +ING ++ G +EL+
Sbjct: 149 SVGNCLLTMYVKSGEIDCGRKLFDEMPRK----GLITWNAMINGYAQNGLANNVLELYKE 204
Query: 225 MPKK----------------------NVASWV-----------------SLIDGFMRKGD 245
M K +V V +L++ + R G+
Sbjct: 205 MESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGN 264
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
LKKA ++F+ MP K VVSWTA+I G+ +G+ E A+ +F +M+ G++ + VS LSA
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
C+ G G+ + +GL+ + +VD+ + G + EA L+ D
Sbjct: 325 CSHAGLTNKGLDYFGVME-RKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADG 383
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
W A++ IH E A F++++ EP T + +L+
Sbjct: 384 ALWGALLGACKIHRNVELAELAFEQVIE--LEPTNTGYYVLLS 424
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 217/403 (53%), Gaps = 27/403 (6%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M R +V P+ T+P V K+ +G +H V++G++ D F R L Y ++G
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 180 TRGAFKVFD--------------------------ETPEKNKSESVLLWNVLINGCSKI- 212
R KVFD + ++ + W +I+G ++
Sbjct: 61 CRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMA 120
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + +A ELF MP +++ W S+IDG+ R G + +A LFE+MPE+ V+SW+ +I+G+
Sbjct: 121 GGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYV 180
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+ GE +AL F +ML G++ + V A++ACA++GALE G +H+Y+
Sbjct: 181 RFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVV 240
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ TAL+DMY KCG ++ A L+F +K ++TW MI GL HG AI+ F +M
Sbjct: 241 VQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETER 300
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
D LA+LT+C ++G V L F M D +EP V+H+ +++LL R G+VD+A
Sbjct: 301 APMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQA 360
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
N I MP P +WG+L +CR+H+ ++A+++++ SL
Sbjct: 361 RNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLG 403
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I + H +D A +F+ +N+ ++++I G + F MLR ++P+
Sbjct: 144 MIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 203
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
R+ + A L L GR LH + K V +D V+ L DMYV+ G+ A +F+
Sbjct: 204 RVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFE 263
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
P+K SV+ WNV+I G GY A++LF M
Sbjct: 264 SMPKK----SVVTWNVMIVGLGTHGYGLDAIKLFNQM 296
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 208/369 (56%), Gaps = 39/369 (10%)
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
L + + T PFV KS A LS + +GR +H ++ G+E D +V L DMYV+
Sbjct: 101 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK------ 154
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
C IG RK LF M +++ASW +LI G+M+
Sbjct: 155 --------------------------CGVIGDARK---LFDKMIVRDMASWNALIAGYMK 185
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVV 300
+G++ A +LFE+M + +VSWTAMI+G++QNG AE+AL +F +ML G ++ N T+V
Sbjct: 186 EGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIV 245
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE- 359
S L ACA+ ALE G R+H++ + L ++ TAL MYAKC ++ A F +
Sbjct: 246 SVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQN 305
Query: 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
K+L+ W MI A HG +A+ F+ M+ +G +PD F+ +L+ C +SG + LN
Sbjct: 306 GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLN 365
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F+ M + +EP V+H+ VV+LL R G++ +A I++MP +WGAL ACR+H
Sbjct: 366 HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 425
Query: 479 KDTKIAKIA 487
++ +IA++A
Sbjct: 426 RNLEIAELA 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALV 338
L + +M G+ ++FT+ L +CA + + G VH GL+G +G +L+
Sbjct: 92 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHG--QGLRVGLEGDFYVGASLI 149
Query: 339 DMYAKCGNIEAA----------------SLVFGETKE---------------KDLLTWTA 367
DMY KCG I A +L+ G KE +++++WTA
Sbjct: 150 DMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 209
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFFD 421
MI G +G EQA+ F +M+ G+E P+ +++L AC S ++ D
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 257/512 (50%), Gaps = 44/512 (8%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T ++ +N+ + ++ T + R++H QI+ S + T L+ +
Sbjct: 127 TRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKC 185
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ ++ + +FD +N+ + +I G +N + + F M V N+ T +
Sbjct: 186 REVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLV 245
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ L L G+ +H ++KSG + ++F+ L D+Y + G R AF VFDE +
Sbjct: 246 TACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTID-- 303
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV---------------- 234
++ W +I G ++ GY R+A++LF ++P S V
Sbjct: 304 --LVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSV 361
Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
+L+D + + + A +FE + +K V++W ++I+G++QNG A
Sbjct: 362 HCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAY 421
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTAL 337
+AL +F QM V + T+VS LSACA VGA G +H Y I +GTAL
Sbjct: 422 EALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTAL 481
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
++ YAKCG+ E+A ++F E EK+ +TW+AMI G I G ++++ F M+ EP+
Sbjct: 482 LNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNE 541
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+F IL+AC +SG + +F++M Y PS+KH+ +V+LL+R G++++AL+FI
Sbjct: 542 VIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIE 601
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
K+P PD + GA CR H + ++A++
Sbjct: 602 KIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVR 633
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 233/531 (43%), Gaps = 56/531 (10%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N TA+ T I + +I+ SL+ + LR+IHA +++H L
Sbjct: 15 NLTVTALQRTPEIDRTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCE 74
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T+L+S ++ A +FD +L+ + V+IR N + + + LR +
Sbjct: 75 TKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLN 134
Query: 127 P-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+ + + V K+ + L GR LHC IVK G D+FV L DMY + + + +
Sbjct: 135 EYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSP-DSFVLTGLVDMYAKCREVEDSRR 193
Query: 186 VFDETPEKNK----------------SESVLLWN---------------VLINGCSKIGY 214
VFDE ++N E ++L+N L+ C+K+G
Sbjct: 194 VFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGA 253
Query: 215 LRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
L + + G + K N L+D + + GD++ A +F+++ +VSWTAMI G
Sbjct: 254 LHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVG 313
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
++Q G +AL +F + N T S LSACA+ G+L G VH C L
Sbjct: 314 YAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVH----CLGIKLG 369
Query: 331 GAIGT---ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
T ALVDMYAKC I A VF +KD++ W ++I G +G +A++ F +
Sbjct: 370 SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQ 429
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M PD +++L+AC G ++ + + SV T ++N ++ G
Sbjct: 430 MRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCG 489
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
+ A ++M E + + W A+ I +Q CS +L +
Sbjct: 490 DAESARVIFDEMGE-KNTITWSAM-----------IGGYGIQGDCSRSLEL 528
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 239/463 (51%), Gaps = 30/463 (6%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++S K I+ A +F+ KN+ +N +I G +N I F M ++
Sbjct: 42 TAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNM- 100
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR---VHLADMYVQL---GKT 180
VS + +L+ GR + ++ +D + + M + L G+
Sbjct: 101 --------VSWNAVIAALVQCGR-----VEEARRRFDEMPKRDVISWTTMVMGLARSGRV 147
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
A KVFD PE+N V+ WN ++ G +K L +A +LF MP++N++SW ++I GF
Sbjct: 148 DEARKVFDRMPERN----VVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGF 203
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTV 299
++ G+L A ++F +MPEK VVSWT MI G+ Q GE+E AL +F +M+ D G R N+ T
Sbjct: 204 IQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTF 263
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-- 357
V+ L AC+ + L G +VH IS + + + + +AL++MY+KCG + A +F +
Sbjct: 264 VNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVI 323
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++DL+ W MI A HG +AI+ F+ M G +P+ ++ +L+AC ++G V L
Sbjct: 324 SQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGL 383
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
N+FD + D I+ HH +V+L R G++ +A +FI ++ IWG L C
Sbjct: 384 NYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNA 443
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
H D +I ++A + L P+ GR WRE
Sbjct: 444 HGDLEIGQLAAK---ELEKEDPENAGTYLLLSNIYASGRKWRE 483
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 166/383 (43%), Gaps = 65/383 (16%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ G A ++FD + + V+ W +++G ++ + +A LF +MP KNV SW
Sbjct: 16 YIKCGLIVDARRLFDRV---DAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSW 72
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++IDG+ + ++ KA E+FE+M E+ +VSW A+I Q G E+A F +M V
Sbjct: 73 NTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDV- 131
Query: 294 ANDFTVVSALSACAKVGALEAGVRV------HNYISCN--------DFGLKGAIG----- 334
+ + + A+ G ++ +V N +S N + L A
Sbjct: 132 ---ISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERM 188
Query: 335 --------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ + + G + A VF E EK++++WT MI G G E A++ F
Sbjct: 189 PERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFV 248
Query: 387 KMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH-----TVVV 440
+M+ G P+ F+ +L AC S L + + I SV + ++
Sbjct: 249 EMIKDGGARPNEGTFVNVLGAC--SDMAGLG----EGQQVHLLISKSVYQDRTFVASALL 302
Query: 441 NLLSRVGQVDKALN-FINKMPETPDFVIWGALFCACRTH------------------KDT 481
N+ S+ G++ A F + + D V+W + A H K
Sbjct: 303 NMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPN 362
Query: 482 KIAKIALQSSCSLNLSIPQAMSY 504
++ + L S+CS + + ++Y
Sbjct: 363 DVSYVELLSACSHAGLVDEGLNY 385
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 18/263 (6%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQM 256
V+ W +I+G K G + A LF + K+V +W +++ G++R +++A LFE M
Sbjct: 5 DVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVM 64
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P K VVSW MI+G+ +N E +KA+ +F +M + + + + V++AL C +V E
Sbjct: 65 PVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWN-AVIAALVQCGRV---EEAR 120
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
R + + D T +V A+ G ++ A VF E+++++W AM+ G A +
Sbjct: 121 RRFDEMPKRDV----ISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNM 176
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
R ++A F++M E + + + ++T +G++ A F+ M E +V
Sbjct: 177 RLDEAFDLFERM----PERNLSSWNTMITGFIQNGELAWARKVFNEM-----PEKNVVSW 227
Query: 437 TVVVNLLSRVGQVDKALNFINKM 459
T ++ + G+ + AL +M
Sbjct: 228 TTMITGYVQEGESESALKVFVEM 250
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 128/252 (50%), Gaps = 25/252 (9%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAM 283
M +++V +W ++I G+++ G + A LF+++ K VV+WTAM++G+ + E+A +
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVH--NYISCNDFGLKGAIGTALVDM 340
F M V + + T++ +V A+E R+H N +S N A+ ALV
Sbjct: 61 FEVMPVKNVVSWN-TMIDGYGKNREVDKAIEVFERMHERNMVSWN------AVIAALV-- 111
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
+CG +E A F E ++D+++WT M+ GLA GR ++A + F +M E + +
Sbjct: 112 --QCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRM----PERNVVSW 165
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
A++T + ++ A + F+ M E ++ ++ + G++ A N+MP
Sbjct: 166 NAMVTGYAKNMRLDEAFDLFERM-----PERNLSSWNTMITGFIQNGELAWARKVFNEMP 220
Query: 461 ETPDFVIWGALF 472
E + V W +
Sbjct: 221 E-KNVVSWTTMI 231
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 226/446 (50%), Gaps = 50/446 (11%)
Query: 89 FTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
TP +N+ + LI GLA+N HF + + F M R V PN T+P K+VASL L
Sbjct: 67 LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVT 126
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI- 206
G+ +H L VK G D FV DMY + A K+FDE PE+N + WN I
Sbjct: 127 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFIS 182
Query: 207 ----------------------------------NGCSKIGYLRKAVELFGMMPKKNVAS 232
N CS +L ++L G++ + +
Sbjct: 183 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 242
Query: 233 WVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
VS LID + + ++ + +F +M K VSW +++ + QN E EKA ++ +
Sbjct: 243 DVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR 302
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGN 346
V +DF + S LSACA + LE G +H + +C + + +G+ALVDMY KCG
Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGC 360
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFLAIL 404
IE + F E EK+L+T ++I G A G+ + A+ F++M G P+ F+++L
Sbjct: 361 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 420
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC +G V+ + FDSMR Y IEP +H++ +V++L R G V++A FI KMP P
Sbjct: 421 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 480
Query: 465 FVIWGALFCACRTHKDTKIAKIALQS 490
+WGAL ACR H ++ +A ++
Sbjct: 481 ISVWGALQNACRMHGKPQLGLLAAEN 506
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 219/422 (51%), Gaps = 37/422 (8%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
QL+QIH +II HNL + QLIS +S YA +F+ + +N++IR L+
Sbjct: 35 QLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLS 94
Query: 106 ENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N + + F+ M+ + ++ T+PFV K+ + S + LG +H L +K+G D
Sbjct: 95 VNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDV 154
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
F + L D+Y + GK KVFD+
Sbjct: 155 FFQNTLMDLYFKCGKPDSGRKVFDK----------------------------------- 179
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP +++ SW +++ G + L A +F QMP + VVSWTAMI + +N ++A +F
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M V+ N+FT+V+ L A ++G+L G VH+Y N F L +GTAL+DMY+KC
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAI 403
G+++ A VF + K L TW +MI L +HG E+A+ F++M + EPD F+ +
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC +G VK L +F M Y I P +H+ ++ LL + +V+KA N + M P
Sbjct: 360 LSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDP 419
Query: 464 DF 465
DF
Sbjct: 420 DF 421
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 204/335 (60%), Gaps = 3/335 (0%)
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
A + + D + + G T A + FD+ P + ++ V+ W V+++G ++ + A E+F
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSELRN--VVTWTVMVDGYARNAEMEAAREVFE 119
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
MP++N +W S+I G+ +KG++K+A +F+++P + +V+W ++I+G++QNG +E+AL
Sbjct: 120 GMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEA 179
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F +M G ++ T+ S LSAC+++G L+AG ++H+ ++ L + LVDMYAK
Sbjct: 180 FGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAK 239
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG++ A L+F ++ W +MI G AIHG+ ++A+++F +M S PD FL++
Sbjct: 240 CGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSV 299
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC + G V L F M Y + +KH+ +++LL R G++ +A + I +MP P
Sbjct: 300 LSACAHGGFVNAGLEIFSRME-KYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKP 358
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
+ V+WGAL ACR H D ++A ++ ++ +I
Sbjct: 359 NDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNI 393
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 45/240 (18%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
L MY + G + KVFD PE+N + WN +I G G + AV LF M +
Sbjct: 6 LVCMYAKCGNVVDSRKVFDYMPERN----AVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+W+ +IDGF R GD + A F+ +P + VV+WT M++G+++N E E A +F
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVF--- 118
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
G+ N+ + ++++ Y K GN+
Sbjct: 119 --------------------------EGMPQRNFFAW----------SSMISGYCKKGNV 142
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ A +F ++L+ W ++I G A +G E+A++ F KM G EPD ++L+AC
Sbjct: 143 KEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSAC 202
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 19/288 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T ++ + + R++ + N FA S +IS ++ A SIF
Sbjct: 94 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWS----SMISGYCKKGNVKEARSIF 149
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +NL +N LI G A+N + + F M P+ +T V + + L LL
Sbjct: 150 DRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLD 209
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++ G++ + FV L DMY + G A +F+ +N++ WN +I
Sbjct: 210 AGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRA----CWNSMI 265
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+G + G ++A+E FG M + +++S++ G + E+F +M + G+
Sbjct: 266 SGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLT 325
Query: 263 S----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ + +I+ + G ++A + +M V+ ND + L AC
Sbjct: 326 TGIKHYGCLIDLLGRAGRIKEAYDLIKRMP---VKPNDVVWGALLGAC 370
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
IGT+LV MYAKCGN+ + VF E++ +TW AMI G +G + A+ F+KM
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKM---- 57
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+ ++ ++ SG + A FFD + + +V TV+V+ +R +++ A
Sbjct: 58 SIRTAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNVVTWTVMVDGYARNAEMEAA 114
Query: 453 LNFINKMPETPDFVIWGAL 471
MP+ +F W ++
Sbjct: 115 REVFEGMPQR-NFFAWSSM 132
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/505 (31%), Positives = 247/505 (48%), Gaps = 61/505 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-----------KSIDYA 82
++ LIH N + +QIHA ++ L + + T+ + H K D++
Sbjct: 12 LLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWS 71
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
LS F P NL LI G A I + + +R P+ T+P V KS A
Sbjct: 72 LSSF----PCNL-----LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKF 122
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
S + R H + VK+G+ D +V+ L +Y G GA KVF++ ++ V+ W
Sbjct: 123 SGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRD----VVSW 178
Query: 203 NVLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLI------------------------ 237
LI+G K G +A+ LF M + NV ++VS++
Sbjct: 179 TGLISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLY 238
Query: 238 -----------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
D +M+ + A ++F++MPEK ++SWT+MI G Q ++L +F Q
Sbjct: 239 GEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQ 298
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M +G + + S LSACA +G L+ G VH YI C+ IGT LVDMYAKCG
Sbjct: 299 MQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGC 358
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A +F K++ TW A I GLAI+G ++A++ F+ ++ SGT P+ FLA+ TA
Sbjct: 359 IDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTA 418
Query: 407 CWYSGQVKLALNFFDSMRFD-YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C ++G V +F+ M Y + P ++H+ +V+LL R G V +A+ I MP PD
Sbjct: 419 CCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDV 478
Query: 466 VIWGALFCACRTHKDTKIAKIALQS 490
I GAL + T+ + + L+S
Sbjct: 479 QILGALLSSRNTYGNVGFTQEMLKS 503
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 38/244 (15%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
+ +++S + + T ++S S R +H I H + I T L+ +
Sbjct: 297 SQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKC 356
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
ID A IF+ KN+ +N I GLA N + + + F ++ RPN +T+ V
Sbjct: 357 GCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVF 416
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE--TPEKN 194
+ L+ GR K F+E +P N
Sbjct: 417 TACCHNGLVDEGR-----------------------------------KYFNEMTSPLYN 441
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELF 253
S + + +++ + G + +AVEL MP +V +L+ G++ E+
Sbjct: 442 LSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEML 501
Query: 254 EQMP 257
+ +P
Sbjct: 502 KSLP 505
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 234/459 (50%), Gaps = 41/459 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNL 94
L+H + QL+Q HAQ++ L S+ + ++L++ + S + S+ +A +F H +
Sbjct: 11 LLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTI 70
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
IFN +I+ L F + I+ F + R + P+ T P+V K+ A ++ + LG +H
Sbjct: 71 CIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHAC 130
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+K G + FV L MY R A +VFDE PE S + W V+I G + +G
Sbjct: 131 TIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPEL----SAVSWTVMIYGYANMGD 186
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ A ELF M K+ W ++I G++ QN
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYV-------------------------------QN 215
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
++ L MF M V ++ +V+ LSACA +GAL+ G+ +H Y+ L +
Sbjct: 216 NCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
T L+DMYAKCG+++ A +F E ++D + W AMI G+A+ G E AI+ F +M +G +
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
PD F+A+ AC SG V + ++ M + IEP +H+ V++LLSRVG+ ++A
Sbjct: 336 PDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEG 395
Query: 455 FINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQ 489
I ++P+T + V W A AC H T+ A++A +
Sbjct: 396 VIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAE 434
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/446 (31%), Positives = 232/446 (52%), Gaps = 42/446 (9%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
++ +HA+ I + I T L+++ S + A ++FD +N+ +N +I G
Sbjct: 65 VKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLR 124
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N +S ++ VF K+ + S + G
Sbjct: 125 NGDTES--AYLVF------------EKMQGKTQVTWSQMIGG------------------ 152
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
+ + G A ++FDE P + K+ V+ W V+++G ++IG + A E+F MMP
Sbjct: 153 -------FARNGDIATARRLFDEVPHELKN--VVTWTVMVDGYARIGEMEAAREVFEMMP 203
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++N W S+I G+ +KG++ +A +F+ +P + + W +MI G+ QNG EKAL F
Sbjct: 204 ERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEG 263
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M G ++FTVVS LSACA++G L+ G ++H+ I + + + LVDMYAKCG+
Sbjct: 264 MGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGD 323
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ A LVF EK++ W AMI G AI+G+ + +++F +M S PDG FL +L+A
Sbjct: 324 LVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSA 383
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C + G V AL M Y IE +KH+ +V+LL R G++ A + I +MP P+
Sbjct: 384 CAHRGLVTEALEVISKME-GYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPNDT 442
Query: 467 IWGALFCACRTHKDTKIAKIALQSSC 492
+ GA+ ACR H D +A+ ++ C
Sbjct: 443 VLGAMLGACRIHSDMNMAEQVMKLIC 468
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 19/292 (6%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H+ N +T T ++ + R++ + N F + + +I ++ A
Sbjct: 171 HELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCF----VWSSMIHGYFKKGNVTEA 226
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
++FD +NL I+N +I G +N + + F M P+ T V + A L
Sbjct: 227 AAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQL 286
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L +G+ +H +I G+ + FV L DMY + G A VF+ EKN + W
Sbjct: 287 GHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKN----IFCW 342
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP- 257
N +I+G + G + +E FG M + N+ ++++++ +G + +A E+ +M
Sbjct: 343 NAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEG 402
Query: 258 ---EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
E G+ + M++ + G + A + +M ++ ND + + L AC
Sbjct: 403 YRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRM---PMKPNDTVLGAMLGAC 451
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/533 (29%), Positives = 249/533 (46%), Gaps = 47/533 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T T ++ + K+ +++H ++ +++ + LI++ ++ A ++F
Sbjct: 469 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D + ++ +N +I G N + + F+ ML L V + T V + A++ LS
Sbjct: 529 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLS 588
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LGR LH VK+ + L DMY + G GA +VF K +++ W I
Sbjct: 589 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF----VKMGDTTIVSWTSTI 644
Query: 207 NGCSKIGYLRKAVELFGMMPKK--------------------------NVASWV------ 234
+ G A+ LF M K +V S+V
Sbjct: 645 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+LI+ + + G +++A +F ++P K +VSW MI G+SQN +AL +F M
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM 764
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ +D T+ L ACA + AL+ G +H +I + + ALVDMYAKCG +
Sbjct: 765 -QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 823
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A L+F +KDL++WT MI G +HG +AI F +M +G EPD + F IL AC
Sbjct: 824 VLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNAC 883
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG + FF+SMR + +EP ++H+ VV+LL+R+G + KA FI MP PD I
Sbjct: 884 SHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 943
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
WG L CR H D K+A+ + L P Y + W E
Sbjct: 944 WGVLLSGCRIHHDVKLAEKVAEHIFELE---PDNTRYYVVLANVYAEAEKWEE 993
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 187/413 (45%), Gaps = 44/413 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L S + +++H+ II + + + +L+ + IFD
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N+L+ A+ +F+ +S F M +L V N T+ V K A+L + + +H
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 494
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G + V L Y + G A +FDE E + V+ WN +INGC G
Sbjct: 495 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD----VVSWNSMINGCVVNG 550
Query: 214 YLRKAVELFGMMPKKNV-----------ASWV---------------------------- 234
+ +E+F M V +W
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+D + + G+L A E+F +M + +VSWT+ I + + G A+ +F +M GVR
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP 670
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ +TV S + ACA +L+ G VH+Y+ N G + AL++MYAKCG++E A LVF
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ KD+++W MI G + + +A++ F M +PD +L AC
Sbjct: 731 SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPAC 782
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 172/384 (44%), Gaps = 53/384 (13%)
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+Y V + A L G+ +H +I+ +G+ D + L MYV G K+FD
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFD-- 428
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------------------- 227
K ++ V LWN+L++ +KIG R++V LF M K
Sbjct: 429 --KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 486
Query: 228 ---KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
K V +V SLI + + G ++ A LF+++ E VVSW +MING
Sbjct: 487 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 546
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
NG + L +F QML GV + T+VS L A A +G L G +H + F +
Sbjct: 547 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEV 606
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
L+DMY+KCGN+ A+ VF + + +++WT+ I G Y AI F +M
Sbjct: 607 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK 666
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVG 447
G PD +I+ AC S + + Y I+ + + V +N+ ++ G
Sbjct: 667 GVRPDIYTVTSIVHACACSSSLDKGRDV-----HSYVIKNGMGSNLPVTNALINMYAKCG 721
Query: 448 QVDKALNFINKMPETPDFVIWGAL 471
V++A +K+P D V W +
Sbjct: 722 SVEEARLVFSKIP-VKDIVSWNTM 744
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 228/456 (50%), Gaps = 41/456 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
++SL+ + ++QI + + L + FA+ RI + + S I +A +F
Sbjct: 16 VLSLLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIIS--FCAVSAQGDISHAYLLFLSL 73
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ I+N ++R + + +S + +ML PN T+ F+ ++ A LS LS G
Sbjct: 74 PRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGI 133
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
LH V+ G E FV+ L +Y A ++FD + ++ V+ W +ING
Sbjct: 134 LLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRD----VVTWTAVINGY 189
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+K G + A +LF MP+KN SW ++I G+ + G ++A ELF M
Sbjct: 190 AKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQI----------- 238
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
AG R N +V AL+ACA +GAL+ G +H Y+ N L
Sbjct: 239 --------------------AGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVL 278
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+GTAL+DMYAKCG +E A VF E ++D+ +T++I GLA HG AI+ F +M
Sbjct: 279 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G P+ F+ +L+AC G V+ L F SM Y IEP V+H+ +V+LL R G +
Sbjct: 339 NEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGML 398
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ A + +MP PD + GAL ACR H D ++ K
Sbjct: 399 EDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGK 434
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 259/502 (51%), Gaps = 49/502 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
NN T T +++ K+ Q+H+ I + S +++ LI+ S +D + +F
Sbjct: 348 NNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVF 407
Query: 87 DHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SL 144
+ KNL ++ V+I A++ + F ML+ +RP++ F S SV S+
Sbjct: 408 REMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDK----FCSSSVLSIIDS 463
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LSLGR +HC I+K G+ D V L MY + G ++ VF++ P+K+ + W
Sbjct: 464 LSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDN----VSWAS 519
Query: 205 LING-----------------------------------CSKIGYLRKAVELFGMMPKKN 229
+I G CS + L K E+ G +
Sbjct: 520 MITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRAR 579
Query: 230 VASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
V V +L++ + + G + A +F+ +P+K S +++++G++QNG E AL +F
Sbjct: 580 VGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFH 639
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
++ A + + FTV S + A A + +L+ G ++H ++ + ++G++LV MY+KCG
Sbjct: 640 EIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCG 699
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I+ VF + ++ DL++WTAMI A HG+ +A++ + M GT+PD F+ +L+
Sbjct: 700 SIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLS 759
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G V+ + +SM +Y IEP H+ +V+LL R G++ +A FIN MP PD
Sbjct: 760 ACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDA 819
Query: 466 VIWGALFCACRTHKDTKIAKIA 487
++WG L AC+ H D ++ ++A
Sbjct: 820 LLWGILLAACKVHGDIELGRLA 841
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/524 (24%), Positives = 236/524 (45%), Gaps = 56/524 (10%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITET----HIISLIHSSN--STKQLRQIHAQIILHNLFA 61
R +++A T N ++ H + + H S S + + + +HA + +
Sbjct: 19 RSISSLAVTENSENFHSTHDTVLPPFDPFHFFSDYTKSGRCTLRNTKILHAHFLKTAILQ 78
Query: 62 SSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
S+ +T L+ S+ +AL +FD N+ +N+LI G +N F+ +F M
Sbjct: 79 SNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKM 138
Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
PN+ TY V + +L G ++ L +K+G + +VR + D++ +L
Sbjct: 139 RFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSF 198
Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG------MMPK------- 227
A +VF + E+V+ WN +I+G K A++LF MP
Sbjct: 199 EDALRVFQDV----LCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSI 254
Query: 228 -------------KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ V WV ++ID + + D+ +A + F +MP + V
Sbjct: 255 LTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNV 314
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSWT +I+GF Q ++ A F +M G + N++T+ S L+AC + ++ V++H++
Sbjct: 315 VSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSW 374
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQ 380
I F L + +AL++MY+K G ++ + VF E + K+L W MI A G +
Sbjct: 375 IFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGR 434
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F++M+ G PD ++L+ +L + ++ F + SV + +
Sbjct: 435 AVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYI--LKIGLFTDISVG--SSLF 490
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ S+ G ++++ +MP+ D V W ++ H + A
Sbjct: 491 TMYSKCGSLEESYTVFEQMPD-KDNVSWASMITGFSEHDHAEQA 533
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/487 (24%), Positives = 211/487 (43%), Gaps = 64/487 (13%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T ++S + S +++ + + F++ + +I + S + AL +F
Sbjct: 146 NQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVF 205
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+N+ +N +I G +N + F M PN T+ + + A+L L
Sbjct: 206 QDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELE 265
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GRG+ ++K G D FV + D+Y + A K F P +N V+ W +I
Sbjct: 266 FGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRN----VVSWTTII 321
Query: 207 NG-----------------------------------CSKIGYLRKAVELF------GMM 225
+G C++ +++AV+L G
Sbjct: 322 SGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFY 381
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMF 284
NV+S +LI+ + + G + + +F +M K + W MI+ F+Q+G +A+ +F
Sbjct: 382 LDSNVSS--ALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELF 439
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ML G+R + F S LS + +L G +H YI ++G++L MY+KC
Sbjct: 440 QRMLQEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKC 496
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++E + VF + +KD ++W +MI G + H EQA+Q F++M+ PD A L
Sbjct: 497 GSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAAL 556
Query: 405 TACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVV----VNLLSRVGQVDKALNFINK 458
TAC AL+ + + Y + V +V VN+ S+ G + A +
Sbjct: 557 TAC-------SALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDM 609
Query: 459 MPETPDF 465
+P+ F
Sbjct: 610 LPQKDQF 616
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 169/539 (31%), Positives = 274/539 (50%), Gaps = 80/539 (14%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIIL---HNLFASSRITTQLISSASLHKSIDYALSI 85
++ I SL+ S + +Q QI+A II+ HN S +S+S +S+ ++ ++
Sbjct: 12 LSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTL 71
Query: 86 FDHFTPKNLHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS--L 142
F T ++ ++N +I+ ++ +S Q S F ML SV P+ T+PF+ K+ A+ +
Sbjct: 72 FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLI 131
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---------------------------- 174
S G +HC ++++G D FV L + Y
Sbjct: 132 SAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMI 191
Query: 175 ---VQLGKTRGAFKVFDET------PEKNK------------------------------ 195
+ G G F+VF E P++
Sbjct: 192 NGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGC 251
Query: 196 -SESVLLWNVLINGCSKIGYLRKAVELFGMM-PKKNV-ASWVSLIDGFMRKGDLKKAGEL 252
+VLL N L++ +K G L A + ++ P K+V A+W SL+ + +G++K A L
Sbjct: 252 FGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRL 311
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F+QM E+ VVSWTAMI+G+S G ++AL +F ++ G++ ++ VV+ALSACA++GAL
Sbjct: 312 FDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGAL 371
Query: 313 EAGVRVHNYISCNDF--GLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAM 368
E G R+H + ++ + +A+VDMYAKCG+I+ A VF +T + K + ++
Sbjct: 372 ELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSI 431
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HGR E A F++M G +PD F+A+L+AC + G V F+SM Y
Sbjct: 432 ISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYG 491
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ P ++H+ +V+LL R G +D+A I KMP + VIW AL AC+ H D +A++A
Sbjct: 492 VSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVA 550
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 239/472 (50%), Gaps = 41/472 (8%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
NI T+++ + +S R + +I N+ +++ S +D A +F+
Sbjct: 219 NIVATNLVHMYCVCSSLGNARVLFDEIPERNVVT----WNVMLNGYSKSGLVDLARDLFE 274
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
K++ + +I G + + + MLR V PN + + + +S
Sbjct: 275 RIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSE 334
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G+ H +IV++G + F++ + Y G+ AF F+
Sbjct: 335 GQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFE------------------- 375
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+ K +V+SW +LI GF+R G +++A +LF++MPE+ V SW++M
Sbjct: 376 ----------------LGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSM 419
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+G+SQN + + AL +F +M+ GV+ N+ T+VS SA A +G L G H YI N
Sbjct: 420 ISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSI 479
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAMIWGLAIHGRYEQAIQYF 385
L + AL+DMYAKCG+I A +F E +++ + W A+I GLA+HG +++ F
Sbjct: 480 PLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLF 539
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
++ +P+ F+ +L+AC ++G V +F M+ Y IEP++KH+ +++LL R
Sbjct: 540 SQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGR 599
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
G++ +A I KMP D VIWG L ACRTH + +I + A ++ L++S
Sbjct: 600 AGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDIS 651
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/443 (24%), Positives = 187/443 (42%), Gaps = 76/443 (17%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S+D A +F+ K + ++ GLA+N+ + I F M V PN +T V
Sbjct: 133 SLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVIS 192
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ + + + R LH L K G+E V +L MY A +FDE PE+N
Sbjct: 193 AYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERN--- 249
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
V+ WNV++NG SK G + A +LF +P K+V SW ++IDG+++ +++ GE
Sbjct: 250 -VVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQ---IERLGE------ 299
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
AL M+ ML GV N+ +V +SAC + A+ G +
Sbjct: 300 ----------------------ALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQ 337
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGN------------------------------- 346
H I F I ++ YA CG
Sbjct: 338 FHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGM 397
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
IE A +F E E+D+ +W++MI G + + + + A+Q F +M+ G +P+ +++ +A
Sbjct: 398 IEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSA 457
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQVDKALNFINKMPET 462
G + +Y + S+ + ++++ ++ G + AL ++ +
Sbjct: 458 IATLGTL-----MEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDR 512
Query: 463 PDFV-IWGALFCACRTHKDTKIA 484
V W A+ C H ++
Sbjct: 513 VSSVSPWNAIICGLAMHGHANVS 535
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 189/467 (40%), Gaps = 110/467 (23%)
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCIS-HFVFMLRLSVRPNR--------LTYPFVSKSVA 140
+PK IF LI L S S + H + LR N+ LT KS +
Sbjct: 4 SPKPKFIFGSLIPNLKWVSAAPSQLPPHPIDHLRAFFNGNKDTQHSDYELTLVSALKSCS 63
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
SL LS G+ +H L+ KSG+ + FV+ L YV+ A +FD
Sbjct: 64 SLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT----------- 112
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
CS + + S ++ G+++ G L A LFE+MP KG
Sbjct: 113 --------CSVL----------------DPVSCNIMLAGYVKSGSLDNARHLFEKMPIKG 148
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VS+T M+ G +QN +A+ +F M AGV N+ T+ S +SA + VG + R+ +
Sbjct: 149 CVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGI-LNCRMLH 207
Query: 321 YISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI--------- 369
+S GL+ + T LV MY C ++ A ++F E E++++TW M+
Sbjct: 208 ALSFK-LGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLV 266
Query: 370 -----------------WGLAIHG-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
WG I G R +A++ ++ M+ +G P+ + + +++AC
Sbjct: 267 DLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISAC 326
Query: 408 WYSGQVKLALNF--------FDS----------------------MRFDYFIEPSVKHHT 437
+ V F FD ++F+ + V
Sbjct: 327 GRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWN 386
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+++ R G +++A ++MPE D W ++ ++ +A
Sbjct: 387 ALISGFVRNGMIEQARQLFDEMPER-DVFSWSSMISGYSQNEQPDLA 432
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 15/294 (5%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LIS + I+ A +FD +++ ++ +I G ++N + F M+ V+PN
Sbjct: 388 LISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPN 447
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T V ++A+L L GR H I+ + + + + L DMY + G A ++F
Sbjct: 448 EITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFY 507
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKG 244
E +++ SV WN +I G + G+ +++LF + K N +++ ++ G
Sbjct: 508 EI--QDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAG 565
Query: 245 DLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + F+ M E + + MI+ + G ++A M +M ++A+
Sbjct: 566 LVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKM---PMKADVVIW 622
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ L+AC G +E G R ++ D GA L ++YA G + A LV
Sbjct: 623 GTLLAACRTHGNVEIGERAAENLAKLDIS-HGAGRVLLSNIYADAGRWDDAFLV 675
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 256/546 (46%), Gaps = 70/546 (12%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQ--LISSASLHKSI-DYALSIFDHFTPKNLHIF 97
S S KQ +Q+HA I++H L I + LIS+++ ++ Y S+ H + +
Sbjct: 14 SLSVKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSW 73
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
IR ++ F+ + +V M R + P K+ A ++ G +H + K
Sbjct: 74 ACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQK 133
Query: 158 SGVEYDA---FVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------------- 194
G +V L D Y +LG A K+FDE E+N
Sbjct: 134 FGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 193
Query: 195 -------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ V+ WN +I+G ++ G + KA LF MP++N ASW ++I G + GD+
Sbjct: 194 QRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDID 253
Query: 248 KAGELFEQMPEKGVVSWTAMINGFS-------------------------------QNGE 276
A F+ MP+K VSW MI+G+S QN
Sbjct: 254 SARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313
Query: 277 AEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
+AL +F ML+ V+ ++ T+ S +SAC+++G L G + +Y+ + G +
Sbjct: 314 PNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TAL+D+YAKCG+I+ A +F ++KDL+ +TAMI G I+G+ AI+ F +M+ +
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ F+ +LTA ++G V+ F SM+ Y + PSV H+ ++V+L R G++ +AL
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLFGRAGRLQEALE 492
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
I MP P +WGAL ACR H + + +IA Q L P Y
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE---PDTTGYRSLLSNIYAS 549
Query: 515 GRTWRE 520
G W +
Sbjct: 550 GERWDD 555
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 226/446 (50%), Gaps = 50/446 (11%)
Query: 89 FTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
TP +N+ + LI GLA+N HF + + F M R V PN T+P K+VASL L
Sbjct: 17 LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVT 76
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI- 206
G+ +H L VK G D FV DMY + A K+FDE PE+N + WN I
Sbjct: 77 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFIS 132
Query: 207 ----------------------------------NGCSKIGYLRKAVELFGMMPKKNVAS 232
N CS +L ++L G++ + +
Sbjct: 133 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 192
Query: 233 WVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
VS LID + + ++ + +F +M K VSW +++ + QN E EKA ++ +
Sbjct: 193 DVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR 252
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGN 346
V +DF + S LSACA + LE G +H + +C + + +G+ALVDMY KCG
Sbjct: 253 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGC 310
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPDGTVFLAIL 404
IE + F E EK+L+T ++I G A G+ + A+ F++M G P+ F+++L
Sbjct: 311 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 370
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC +G V+ + FDSMR Y IEP +H++ +V++L R G V++A FI KMP P
Sbjct: 371 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 430
Query: 465 FVIWGALFCACRTHKDTKIAKIALQS 490
+WGAL ACR H ++ +A ++
Sbjct: 431 ISVWGALQNACRMHGKPQLGLLAAEN 456
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 41/338 (12%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A +FD +NL +N I + + I F+ R+ PN +T+ +
Sbjct: 110 DDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNAC 169
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----- 194
+ L+LG LH L+++SG + D V L D Y + + R + +F E KN
Sbjct: 170 SDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWC 229
Query: 195 ------------KSESVL--------------LWNVLINGCSKIGYLRKAVELFGMMPKK 228
+ SVL + + +++ C+ + L + K
Sbjct: 230 SLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA 289
Query: 229 NVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
V + +L+D + + G ++ + + F++MPEK +V+ ++I G++ G+ + ALA+F
Sbjct: 290 CVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALF 349
Query: 285 FQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDM 340
+M G N T VS LSAC++ GA+E G+++ + + + +G++ + +VDM
Sbjct: 350 EEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMR-STYGIEPGAEHYSCIVDM 408
Query: 341 YAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGR 377
+ G +E A + + + W A+ +HG+
Sbjct: 409 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGK 446
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY+K + E+A LV T +++++WT++I GLA +G + A+ F +M G P+
Sbjct: 1 MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60
Query: 400 F 400
F
Sbjct: 61 F 61
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 166/518 (32%), Positives = 251/518 (48%), Gaps = 56/518 (10%)
Query: 28 NITETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLI---SSASLHKSIDY 81
N + H+ S HS NS K L+QIH I + + +LI SS+S + Y
Sbjct: 2 NSLQLHLFS--HSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFY 59
Query: 82 ALSIF---DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
SI H L + N +IR ++ NS S + ML + + P+ T P V K+
Sbjct: 60 IRSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKA 119
Query: 139 VASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+A + + G+ +H +K+G V ++ +V L +Y G KVFDE P ++
Sbjct: 120 LALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRD--- 176
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNVA 231
++ W LI +K G +AVE F M + V
Sbjct: 177 -LVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVH 235
Query: 232 SWV--------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
S++ +L+D +++ DL A ++F++MP K VV+W AMI+G + G
Sbjct: 236 SYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRY 295
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+AL F M D GV+ ++ T+V L++CA +G LE G VH Y+ N +G AL
Sbjct: 296 REALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNAL 355
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG+I+ A VF K +D+ ++TAMI+GLA+HG A Q F +M G EP+
Sbjct: 356 LDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNE 415
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
FL +L AC + G V +F M Y + P +H+ +++LL R G V +A I+
Sbjct: 416 VTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIH 475
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
KM PD GAL ACR H + I + +Q L+
Sbjct: 476 KMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 513
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 242/466 (51%), Gaps = 47/466 (10%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK----SI 79
KP + + + + SLI S Q++Q HA NL +++IT +I++ L S+
Sbjct: 172 KPFHYVNHSKLSSLIDLCKSINQIKQTHA-----NLITTAQITLPVIANKFLKNVALASL 226
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
YA +FD +L I+N +I+ + + H + I+ F ++R S PNR ++ F
Sbjct: 227 TYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFG 286
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ + + G + VK G++ + FV
Sbjct: 287 ACGNGMCVREGEQVFTHAVKVGLDGNVFVV------------------------------ 316
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
N LI K G + A +F ++ SW ++I ++ G++ A ELF++M
Sbjct: 317 -----NALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMH 371
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
E+ VVSW+ +I G+ Q G +AL F +ML + V+ N++T+VSAL+AC+ + AL+ G
Sbjct: 372 ERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKW 431
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
+H YI ++ + + +L+DMYAKCG I++AS VF E K ++ + W AMI G A+HG
Sbjct: 432 IHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHG 491
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ E+AI F+KM P+ F+A+L AC + VK ++F+ M DY I P ++H+
Sbjct: 492 KPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHY 551
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+V+LLSR G + + I MP PD IWGAL ACR +KD +
Sbjct: 552 GCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDME 597
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 64/325 (19%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE-KALAMFFQML-DAGVRANDFTVVSAL 303
L A +LF+Q+P+ + + MI S + + ++A+F ++ D+G N ++ V A
Sbjct: 226 LTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAF 285
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFG------ 355
AC + G +V + GL G + AL+ M+ K G +E A VF
Sbjct: 286 GACGNGMCVREGEQV--FTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRD 343
Query: 356 -------------------------ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
E E+D+++W+ +I G G + +A+ +F KM+
Sbjct: 344 FYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 403
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH----TVVVNLLSRV 446
S +P+ ++ L AC S V L + + Y ++K + ++++ ++
Sbjct: 404 SEVKPNEYTMVSALAAC--SNLVALDQGKWIHV---YIRRDNIKMNDRLLASLIDMYAKC 458
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTH------------------KDTKIAKIAL 488
G++D A + ++ W A+ H K+ IAL
Sbjct: 459 GEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIAL 518
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKG 513
++CS + + SY + G
Sbjct: 519 LNACSHGYMVKEGKSYFELMASDYG 543
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/486 (30%), Positives = 238/486 (48%), Gaps = 72/486 (14%)
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
H P L NVLIR LA F ++ + + + + TYPFV +++ + L
Sbjct: 7 HAMP--LRDCNVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVE 64
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADM-------------------------------YVQ 176
GR +H VK+G +DA+ L +M Y++
Sbjct: 65 GRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIR 124
Query: 177 LGKTRGAFKVFDE------TPEKNK----------------------------SESVLLW 202
G+ A + +E TP++ S+ +
Sbjct: 125 CGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPVA 184
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L++ +K GYL +AV++F MP++N+ SW L+ G+ G L KA LF Q +K ++
Sbjct: 185 NALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLI 244
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
WTAMIN Q+G E+AL +F M V + FTVV+ L+ CA +GAL+ G +H Y
Sbjct: 245 LWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYA 304
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + +GTAL++MY+KCG+++ + +FG + +D WTA+I GLA +G+ +A+
Sbjct: 305 EGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKAL 364
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F++M S T+PDG F+ +L AC + G V F +M+ Y IEP ++H++ +VNL
Sbjct: 365 ELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNL 424
Query: 443 LSRVGQVDKALNFINKMPETPDFV-IWGALFCACRTHKDT----KIAKIALQSSCSLNLS 497
L G + +A I MP D + ++GAL AC+ + + ++ K + CS N
Sbjct: 425 LGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQNPD 484
Query: 498 IPQAMS 503
+ MS
Sbjct: 485 VNVLMS 490
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/517 (31%), Positives = 255/517 (49%), Gaps = 76/517 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIR 102
+ L+ +HAQIILH L + +LIS ++ + D YA +FD N ++N LIR
Sbjct: 2 RGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIR 61
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G + + + F M+ + PN T PFV K+ S +H L +K G+
Sbjct: 62 GYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121
Query: 163 DAFVR------------VHLA-----DM--------------YVQLGKTRGAFKVFDETP 191
FV+ +H A D+ Y +G + AF +F +
Sbjct: 122 LVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMR 181
Query: 192 EKNKSES-----------------------------------VLLWNVLINGCSKIGYLR 216
E +++ N L++ +K G L
Sbjct: 182 EWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLH 241
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A +F +KNV SW S+I + + G ++ A ++F+QMP K VVSW +MI+ + + G+
Sbjct: 242 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT- 335
+AL +F +M ++ V ++ T+VS L+AC+++G L G ++HNYI N KGA G
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN----KGAYGVT 357
Query: 336 ---ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+L+DMYAKCG + A +F E K+L++W +I LA+HG +AI+ F++M G
Sbjct: 358 LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADG 417
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
T PD +L+AC +SG V + L +FD M Y + ++H+ +V+LL R G + +A
Sbjct: 418 TLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 477
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ I +MP PD V+WGAL ACR H + +I K L+
Sbjct: 478 IELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILK 514
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 233/457 (50%), Gaps = 50/457 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L+ +S ++++QIH I H L + I+++L++ + + YA ++F H N
Sbjct: 7 VVGLLEQCSSMREMKQIHGHAITHGLARFAFISSKLLAFYA-RSDLRYAHTLFSHIPFPN 65
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +N +I + H+ S F+ ML +V PN T F S L LH
Sbjct: 66 LFDYNTIITAFS--PHYSSLF--FIQMLNAAVSPNSRT--FSLLLSKSSPSLPFLHQLHS 119
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I++ G D +V L Y G TR A ++FD++
Sbjct: 120 HIIRRGHVSDFYVITSLLAAYSNHGSTRAARRLFDQS----------------------- 156
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK--GVVSWTAMINGF 271
P KNVA W SL+ G+ G + A LF+ +PE+ VS++AM++G+
Sbjct: 157 ------------PYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGY 204
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND----F 327
+NG + + +F ++ D V+ N+ + S LSACA VGA E G +H Y+ N +
Sbjct: 205 VKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYY 264
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
L+ +GTAL+D Y KCG +E A VFG K KD+ W+AM+ GLAI+ + ++A++ F++
Sbjct: 265 ELE--LGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEE 322
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M G P+ F+ +LTAC + AL F M Y I S++H+ VV++L+R G
Sbjct: 323 MEKVGPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSG 382
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++++AL FI M PD VIWG+L C H + ++
Sbjct: 383 KIEEALEFIKSMEVEPDGVIWGSLLNGCFLHNNIELG 419
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/460 (31%), Positives = 234/460 (50%), Gaps = 40/460 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ SL N+ K L+Q H +I+ L + + I + S + YA S+F H N
Sbjct: 18 VTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPN 77
Query: 94 LHIFNVLIRGLA---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++ N +IR L+ E + I+ + + L +P+ T+PFV K +S + GR
Sbjct: 78 TYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQ 137
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H +V G + V L MY G A K+FDE
Sbjct: 138 IHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDE--------------------- 176
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMI 268
M K+V W +L+ G+ + G++ +A L E MP + VSWT +I
Sbjct: 177 --------------MLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVI 222
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++++G A +A+ +F +ML V ++ T+++ LSACA +G+LE G R+ +Y+
Sbjct: 223 SGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMN 282
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ A++DMYAK GNI A VF E++++TWT +I GLA HG +A+ F +M
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +G P+ F+AIL+AC + G V L F+SMR Y I P+++H+ +++LL R G+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGK 402
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
+ +A I MP + IWG+L A H D ++ + AL
Sbjct: 403 LREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERAL 442
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 221/418 (52%), Gaps = 26/418 (6%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ +D A FD K++ +N++I G N F M P R
Sbjct: 150 RKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRM------PER------- 196
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKTRGAFKVFDET 190
+V S + + G + ++ V +D+ LA Y+ +G A +F +
Sbjct: 197 -NVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKM 255
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
P + WN++I+G K G L A + F MP KNV SW ++DG+++ GD A
Sbjct: 256 PIHDTGS----WNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGAR 311
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF+QMP K +V+W+ MI G+++NG+ KAL +F + + ++ ++ ++ +SAC+++G
Sbjct: 312 CLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLG 371
Query: 311 ALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
++A + HNY+ + + T+L+DMYAKCG+IE A +F KDLL ++ MI
Sbjct: 372 IIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMI 430
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
LA HG AI F KM + +PD FL +LTAC + G V +F M ++ I
Sbjct: 431 AALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGI 490
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+PS KH+ VV+LL RVG +++A N I MP P V+WGAL ACR H + ++A++A
Sbjct: 491 QPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVA 548
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 229/452 (50%), Gaps = 27/452 (5%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPK 92
I+ +IH+ + K L+ IHA++++ + ASS + +L+ S + DYA +FD T
Sbjct: 5 ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N +++ LI G EN + S F+ M R + T V K++A L+ G+ ++
Sbjct: 65 NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
++K G +D V+ + D++++ K A + FDE EK+ ++ WN++I+G
Sbjct: 125 GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKD----IVSWNMMISGYGNN 180
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
+ A + F MP++NV SW S+I G+++ GD+ +A LF+ MP K + SW M++G+
Sbjct: 181 DRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYM 240
Query: 273 QNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
G+ A +F +M D G + ++ +S K G LE+ + + +
Sbjct: 241 DIGDCVNARIIFGKMPIHDTG----SWNIM--ISGFCKAGELESAKDFFDRMPNKNVISW 294
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
G ++D Y K G+ A +F + K+L+TW+ MI G A +G+ +A++ F++
Sbjct: 295 G----IMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKE 350
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRV 446
+PD T L I++AC G + A + + ++ PS ++ T ++++ ++
Sbjct: 351 QDIKPDETFILGIISACSQLGIIDAAESIIHN-----YVGPSLLSDLRVFTSLIDMYAKC 405
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTH 478
G ++KAL +M D + + + A H
Sbjct: 406 GSIEKALQMF-EMAHPKDLLCYSTMIAALANH 436
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 31 ETHIISLIHSSNSTKQLRQIHA-QIILHN-----LFASSRITTQLISSASLHKSIDYALS 84
ET I+ +I ++ QL I A + I+HN L + R+ T LI + SI+ AL
Sbjct: 357 ETFILGII---SACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQ 413
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F+ PK+L ++ +I LA + + I F M R +++P+ +T+ V + L
Sbjct: 414 MFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGL 473
Query: 145 LSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ GR + + G++ + D+ ++G A+ + P S ++W
Sbjct: 474 VDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHS---VVWG 530
Query: 204 VLINGC 209
L+ C
Sbjct: 531 ALLAAC 536
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 257/529 (48%), Gaps = 80/529 (15%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPK 92
ISL+ + N+ ++ QIH+Q I L ++ T++I +S D YA +FD
Sbjct: 39 ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-L 151
++ I+N +I+G + + +S +S + ML +++P+ T+PF+ K L G+ L
Sbjct: 99 SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
+ ++ ++ + FV+ ++ G A K+FD V+ WNV+++G ++
Sbjct: 159 NHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD----MGDGWEVVTWNVVLSGYNR 214
Query: 212 IGYLRKAVELFGMMPKK------------------------------------------N 229
++ LF M KK N
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQ-------------------------------MPE 258
+ +LID F G++ A +F++ MPE
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPE 334
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VSWTAMI+G+ + ++ L +F M + V+ ++FT+VS L+ACA +GALE G
Sbjct: 335 RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWA 394
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
YI N IG AL+DMY KCGN+E A +F E ++KD TWTAMI GLA +G
Sbjct: 395 KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHG 454
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
E+A+ F M+ + PD ++ ++ AC + G V +FF +M + I+P++ H+
Sbjct: 455 EEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGC 514
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V+LL R G + +AL I MP P+ ++WG+L ACR HK+ ++A++A
Sbjct: 515 MVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMA 563
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 137/344 (39%), Gaps = 39/344 (11%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
IK N I E +I + S R + ++ ++ + + I T ++
Sbjct: 266 IKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCR---- 321
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A FD ++ + +I G + F+ ++ F M +V+P+ T + +
Sbjct: 322 IDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTA 381
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L L LG I K+ ++ D F+ L DMY + G A K+F+E +K+K
Sbjct: 382 CAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDK--- 438
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
W +I G + G+ +A+ +F M + +V +++ ++ G + K F
Sbjct: 439 -FTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFS 497
Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + + + M++ + G ++AL + M V+ N S L AC
Sbjct: 498 NMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNM---PVKPNSIVWGSLLGAC--- 551
Query: 310 GALEAGVRVHNYISCNDFGL---------KGAIGTALVDMYAKC 344
RVH + + GA+ L ++YA C
Sbjct: 552 -------RVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAAC 588
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/534 (30%), Positives = 270/534 (50%), Gaps = 85/534 (15%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIF 86
+++ + + L+ S S L QIHA+I L + T+++ + SI YA +
Sbjct: 14 LSKNYCVDLLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVL 73
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
L ++N++I+ +A++ +F+ + F + + + P+ T P V K++ L +
Sbjct: 74 GFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVV 133
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H +VKSG +DA V + MY LGK A KVFDE PE++ V+ WNVLI
Sbjct: 134 EGEKVHGYVVKSG--FDACVCNSVMGMYGALGKMEVAKKVFDEIPERD----VVSWNVLI 187
Query: 207 NGCSKIGY--LRKAVELFGMMP-----KKNVASWVS------------------------ 235
+ S +G+ A+ +F M K + A+ VS
Sbjct: 188 S--SYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAE 245
Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF- 284
L+D + + G + KA +F++M K V+ WT+M++G++ NG ++A +F
Sbjct: 246 LEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFE 305
Query: 285 -------------------FQMLDAG-----------VRANDFTVVSALSACAKVGALEA 314
F + D +R ++F +V+ L CA+ GALE
Sbjct: 306 RSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQ 365
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G +H YI N L +GTALVD+YAKCG +E A VF E KE+D +WT++I+GLA+
Sbjct: 366 GKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAV 425
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
+G +A+ +F +M +G PD F+ +LTAC + G V+ +FDSM Y I+P +
Sbjct: 426 NGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSE 485
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMP-ETPDFVI--WGALFCACRTHKDTKIAK 485
H++ +++LL R G +D+A + +P E+ D V+ + +L ACR + + K+++
Sbjct: 486 HYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSE 539
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 20/305 (6%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++S + + S+D A +F+ +++ ++ +I G + + F + F M +R
Sbjct: 285 TSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLR 344
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ + K A L G+ LH I ++ + D V L D+Y + G A +V
Sbjct: 345 PDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEV 404
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E E++ + W +I G + G KA++ F M + + +++ ++
Sbjct: 405 FYEMKERDTAS----WTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNH 460
Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G +++ F+ M + + ++ +I+ + G ++A + + + ++D
Sbjct: 461 GGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMI---PIESSDI 517
Query: 298 TV---VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
V S LSAC G L+ RV + + ++ T L +YA E + V
Sbjct: 518 VVPLYCSLLSACRNYGNLKMSERVGRRLERVEVK-DSSVHTLLASVYASANRWEDVTTVR 576
Query: 355 GETKE 359
+ KE
Sbjct: 577 RKMKE 581
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 65/471 (13%)
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCL 154
+ N+LIR A ++ + + F +LR + P+R T P + S L + G +H
Sbjct: 61 LHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQ 120
Query: 155 IVKSGVEYDAFVRVHLADMY--------------------------------VQLGKTRG 182
V+ G D FV L MY V+ G+
Sbjct: 121 AVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMES 180
Query: 183 AFKVFDETPEKNK-----------------------------SESVLLWNVLINGCSKIG 213
A +VFDE P +N +V+ WN ++ G ++ G
Sbjct: 181 AKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHG 240
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
L A ++F MP +N+ SW +++ G+ D+ A ELF+ MPEK VVSWT MI+G++Q
Sbjct: 241 LLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQ 300
Query: 274 NGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
G + L +F M ++ V+ N+ T+VS LSACA + ALE G VH +I + L
Sbjct: 301 AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNE 360
Query: 333 --IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+G AL+DMYAKCG + A +F K++ W A+I LA++G + ++ F++M
Sbjct: 361 YNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKR 420
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+G +P+ F+ +LTAC + G V F SM ++P VKH+ +V++L R G ++
Sbjct: 421 TGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLE 480
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
+A I MP PD +++GAL ACR HK +A+ SLNL+ Q+
Sbjct: 481 EAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQS 531
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 6/191 (3%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSI 79
S+ N +T ++S + + ++ R +HA I H + ++ + LI +
Sbjct: 318 SNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A+ IF+ KN+ +N LI LA N + Q + F M R +PN +T+ V +
Sbjct: 378 DIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTAC 437
Query: 140 ASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L+ GR + GV+ + + DM + G A ++ P +
Sbjct: 438 SHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP---MAPD 494
Query: 199 VLLWNVLINGC 209
V+++ L+ C
Sbjct: 495 VMVFGALLGAC 505
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 235/481 (48%), Gaps = 55/481 (11%)
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ + N+H +N +I LA + F + +L + P R ++P KS ++L L
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
GR H G E D FV L DMY + G+ + A +FDE P +N V+ W +
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN----VVSWTSM 2087
Query: 206 ING-------------------------------------------CSKIGYLRKAVELF 222
I G CS++ +
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147
Query: 223 GMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
G + KK + +L+D + + G + ++F+ M EK +SW +MI ++Q+G +
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207
Query: 279 KALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+AL +F M+ GVR N T+ + L ACA GAL AG +H+ + D +GT++
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMY KCG +E A F KEK++ +WTAM+ G +HGR ++A+ F KM+ +G +P+
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+++L AC ++G V+ ++F++M+ Y IEP ++H+ +V+L R G +++A N I
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517
+M PDFV+WG+L ACR HK+ + +IA Q L+ P Y D
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELD---PDNCGYYVLLSNLYADAGR 2444
Query: 518 W 518
W
Sbjct: 2445 W 2445
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 219/444 (49%), Gaps = 37/444 (8%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T + P+ NI + P NI + L+ + + K LRQIHA+II L +T +L
Sbjct: 8 THDVFPSKNIPLT--PRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKL 65
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
I S H I YA+ +F +N++IR N + + + M+ + ++
Sbjct: 66 IHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADK 125
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
T+PFV K+ + + LG+ +H ++K G D FV+ +L D Y + G TR A KVF
Sbjct: 126 FTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF-- 183
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
EK + +V+ W +I+G G L++A +F +P KNV SW ++I+G++R
Sbjct: 184 --EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR------- 234
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
N + E+AL +F +M + N++T+VS + AC ++
Sbjct: 235 ------------------------NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G L G +H+Y N + +GTAL+DMY+KCG+I+ A VF K L TW +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
L +HG ++A+ F +M +PD F+ +L AC + VK +F M Y I
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390
Query: 430 EPSVKHHTVVVNLLSRVGQVDKAL 453
P +H+ + L +R +D+A
Sbjct: 391 APIPEHYECMTELYARSNNLDEAF 414
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 60/381 (15%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R H Q + +++ LI S + A ++FD +N+ + +I G +N
Sbjct: 2035 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094
Query: 108 SHFQSCISHFV-FMLRLSVRPNRLTYPFVSKSVASLSLLS---------LGRGLHCLIVK 157
+ + F F+ + + P SV +S+LS + G+H +VK
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPL--DSVVMVSVLSACSRVSGKGITEGVHGFVVK 2152
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
G + V L D Y + G+ + KVFD EK+ + WN +I ++ G +
Sbjct: 2153 KGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD----ISWNSMIAVYAQSGLSGE 2208
Query: 218 AVELFGMMPKK----------------------------------------NVASWVSLI 237
A+E+F M + NV S+I
Sbjct: 2209 ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 2268
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G ++ A + F++M EK V SWTAM+ G+ +G A++AL +F++M+ AGV+ N
Sbjct: 2269 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 2328
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVF 354
T VS L+AC+ G +E G N + + + ++ I +VD++ + G + EA +L+
Sbjct: 2329 TFVSVLAACSHAGLVEEGWHWFNAMK-HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387
Query: 355 GETKEKDLLTWTAMIWGLAIH 375
+ D + W +++ IH
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIH 2408
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/495 (32%), Positives = 249/495 (50%), Gaps = 59/495 (11%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPKNLHIF 97
S ++ LR +HA + A + + + L A L+ ++ + A +FD + ++
Sbjct: 136 SAASAALRPLHALAVASGFAADNFVASAL---AKLYFTLSRGNDARKVFDAVPSPDTVLW 192
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
N L+ GL+ + ++ FV M SVRP+ T V + A ++ ++GR +H
Sbjct: 193 NTLLAGLSGSEALEA----FVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGE 248
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+ V L +Y + G A +FD + + ++ +N LI+G S G +
Sbjct: 249 KCGLAQHEHVVTGLISLYAKCGDMECARHLFD----RMEGPDLVTYNALISGYSINGMVG 304
Query: 217 KAVELF----GMMPKKNVASWVSLI------------------------DG--------- 239
+VELF GM + + ++ V+LI D
Sbjct: 305 SSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALT 364
Query: 240 --FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ R D+ A F+ MPEK + SW AMI+G++QNG E A+A+F QM VR N
Sbjct: 365 TLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPL 424
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+ SALSACA++GAL G VH I+ L + TAL+DMY KCG+I A +F
Sbjct: 425 TISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSM 484
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K++++W MI G +HG+ +A++ +K MM + P + FL++L AC + G VK
Sbjct: 485 DNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGT 544
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCA 474
F SM DY I P ++H T +V+LL R GQ+ +A I++ P++ P IWGAL A
Sbjct: 545 TVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG--IWGALLGA 602
Query: 475 CRTHKDTKIAKIALQ 489
C HKD +AK+A Q
Sbjct: 603 CMVHKDGDLAKLASQ 617
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 185/432 (42%), Gaps = 51/432 (11%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
S +P + + + + +N+T R +HA L + T LIS + ++
Sbjct: 216 SVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMEC 274
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +L +N LI G + N S + F ++ + +RP+ T + +
Sbjct: 275 ARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSP 334
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L LH +VK+G++ +A V L +Y + A + FD PEK
Sbjct: 335 FGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMES---- 390
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV----- 234
WN +I+G ++ G AV LF M NV WV
Sbjct: 391 WNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIA 450
Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+LID +++ G + +A +F+ M K VVSW MI+G+ +G+ +AL
Sbjct: 451 NEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALK 510
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDM 340
++ M+DA + T +S L AC+ G ++ G V ++ +D+G+ I T +VD+
Sbjct: 511 LYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMT-SDYGITPGIEHCTCMVDL 569
Query: 341 YAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
+ G ++ A + E + + W A++ +H + A +K+ EP+ T
Sbjct: 570 LGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFE--LEPENT 627
Query: 399 VFLAILTACWYS 410
+ +L+ + S
Sbjct: 628 GYYVLLSNLYTS 639
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/486 (23%), Positives = 203/486 (41%), Gaps = 65/486 (13%)
Query: 35 ISLIHSSNSTKQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+ LI S++ L Q+ A + H + ++ L+ ASL + L ++ F
Sbjct: 28 LRLISLSSTLGHLDQLLAVSLASGHYTLDHAPASSLLLRYASLRSPPAHLLRLYRAFPRP 87
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS------LSLLS 146
+ + N L+R L + + +F P+ ++ F + S+AS +S S
Sbjct: 88 DRFLRNSLLRSL------PTLRADLLF-----PSPDSFSFAFAATSLASSCSRGGISPPS 136
Query: 147 LG----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
R LH L V SG D FV LA +Y L + A KVFD P S +LW
Sbjct: 137 AASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVP----SPDTVLW 192
Query: 203 NVLINGCSKIGYLRKAVELFG---MMPKKNVASWV------------------------- 234
N L+ G S L V + G + P + V
Sbjct: 193 NTLLAGLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGL 252
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
LI + + GD++ A LF++M +V++ A+I+G+S NG ++ +F +
Sbjct: 253 AQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKE 312
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
++ G+R + T+V+ + + G +H ++ + TAL +Y + +
Sbjct: 313 LVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFND 372
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+++A F EK + +W AMI G A +G E A+ F++M P+ + L+A
Sbjct: 373 MDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSA 432
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C G + L + + + +E +V T ++++ + G + +A + M + + V
Sbjct: 433 CAQLGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSM-DNKNVV 490
Query: 467 IWGALF 472
W +
Sbjct: 491 SWNVMI 496
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 120/270 (44%), Gaps = 15/270 (5%)
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVV 300
R D +K +F+ +P V W ++ G S +AL F +M AG VR + T+
Sbjct: 173 RGNDARK---VFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLA 225
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L A A+V G VH + + T L+ +YAKCG++E A +F +
Sbjct: 226 SVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGP 285
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL+T+ A+I G +I+G +++ FK+++ G P + +A++ G LA
Sbjct: 286 DLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLA-GCL 344
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+ ++ + T + L R +D A + MPE W A+ +
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEK-TMESWNAMISGYAQNGL 403
Query: 481 TKIAKIALQSSCSLN-----LSIPQAMSYC 505
T++A Q +LN L+I A+S C
Sbjct: 404 TEMAVALFQQMQALNVRPNPLTISSALSAC 433
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 162/538 (30%), Positives = 251/538 (46%), Gaps = 51/538 (9%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N+ T + I+ + ++ RQ+H I + + + LIS + + + A
Sbjct: 248 KP-NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ 306
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD T +++ +N +I G +N I F+ ML V + T V + A++
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L LG+ LH +K+ D VR + L DMY + G A +VF+ EK +V+
Sbjct: 367 TLLLGKVLHSYSIKAAT-LDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK----TVVS 421
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------------ 231
W +I G + G A++LF M + V
Sbjct: 422 WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR 481
Query: 232 -------SWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
S+VS L D + + G +K A ++F M +K V+SW MI G+++N +AL
Sbjct: 482 ENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALT 541
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M + + TV L ACA + AL+ G +H Y N + + A+VDMY
Sbjct: 542 LFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYV 600
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG + A +F KDL++WT MI G +HG +AI F +M +G EPD F++
Sbjct: 601 KCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFIS 660
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL AC +SG + F+ M+ + IEP+++H+ +V+LL+R G + KA FI MP
Sbjct: 661 ILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK 720
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
PD IWGAL C CR H D K+A+ + L P+ Y + W E
Sbjct: 721 PDATIWGALLCGCRIHHDVKLAEKVAERIFELE---PENTGYYVLLANIYAEAEKWEE 775
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 117/239 (48%), Gaps = 1/239 (0%)
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
V L+ +++ GDLK+ +F+++ E + W MI+ +S +G +++ +F QML+ G++
Sbjct: 189 VKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIK 248
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N +T S L A V +E G +VH I F + +L+ Y + A +
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E ++D+++W +MI G +G ++ I+ F KM+ G + D + + AC G +
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTL 368
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
L ++ V+ + ++++ S+ G ++ A+ +M E V W ++
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKT-VVSWTSMI 426
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L CA+ ++ G RV + I + + G +G LV MY KCG+++ +VF + E
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
+ W MI + G Y ++I FK+M+ G +P+ F +IL
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 231/471 (49%), Gaps = 74/471 (15%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
NVLIR LA F ++ + + + + TYPFV ++V L L GR H VK
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
+G +DA+ L +MY LG+ A KVFDE P S +++LWN+++ + G+
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMP----SRALVLWNMMVRCYIRCGWYSA 133
Query: 218 AV------ELFGMMPKK--------------------------------NVASWVSLIDG 239
AV E G+ P + N+ +L+D
Sbjct: 134 AVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDM 193
Query: 240 FMRKGDLKKAGELFEQMPEKGVVS-------------------------------WTAMI 268
+ + L++A +LFEQMP + ++S WTAMI
Sbjct: 194 YTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMI 253
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
N Q+G E+AL +F M V + FTVV+ L+ CA +GAL+ G +H Y
Sbjct: 254 NACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMK 313
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +GTAL+DMY+KCG+IE + VF + +D WTA+I GLA +G+ +A++ F+ M
Sbjct: 314 IDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDM 373
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
S +PDG F+ +L+AC + G V F +MR Y IEP V+H++ +VNLL R G
Sbjct: 374 QRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGL 433
Query: 449 VDKALNFINKMPETPDFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
+D+A I +P D + ++GAL AC+ H + ++++ + C + I
Sbjct: 434 LDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQI 484
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 23/273 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+S L +D A +F+ K+L ++ +I ++ F+ ++ F M V
Sbjct: 219 TILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVE 278
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+R T + A+L L G +H + ++ DA + L DMY + G + +V
Sbjct: 279 PDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEV 338
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMR 242
F ++ + W +I G + G +A+ELF M + V +++ ++
Sbjct: 339 FWRMQGRDATA----WTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCH 394
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRA 294
G + + + F M E V ++ ++N + G EAE+ + D +
Sbjct: 395 GGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIG------DVPINK 448
Query: 295 NDFTVVSA-LSACAKVGALEAGVRVHNYISCND 326
+ + A L+AC G +E R+ I D
Sbjct: 449 DAMPLFGALLTACKAHGNVEMSERLTKRICEQD 481
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/524 (29%), Positives = 250/524 (47%), Gaps = 76/524 (14%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA-SLHKSIDYALSIFDHF 89
E ++ ++ + S LRQ HA+++ L AS R+ L+++A S H + ++
Sbjct: 2 EQELLRILRTLGSPHHLRQAHARLVAAGLSASPRLLPALVAAAFSAHSPRHASAALRAAG 61
Query: 90 TPKNLHIFNVLIRGLAENSHFQ----SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ N LI LA + ++ + ML V PN T+ F+ ++ A L
Sbjct: 62 PAASSVSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFP 121
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT------------------------- 180
R +H IV+ G + FV+ L D+Y + G
Sbjct: 122 RPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSII 181
Query: 181 ---------RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----- 226
GA ++F+ PE+N V+ WN L+ G +++G + A +F MP
Sbjct: 182 GVYMSSGDYTGAMELFEAMPERN----VVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAI 237
Query: 227 ---------------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
KK+V SW +++ + + GDL A ELF+ MP K
Sbjct: 238 SWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLK 297
Query: 260 GVVSWTAMINGFSQNGEAEKALAMF-FQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+VSW AMI G++ N +AL F ML+ R ++ T+VS +SACA++G++E +
Sbjct: 298 NLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWI 357
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
++I ++ L A+G AL+DM+AKCG++ A +F E K + ++TWT MI G A +G
Sbjct: 358 SSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLC 417
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A+ + M G E D VF+A L AC + G ++ + F+ M Y I+P ++H+
Sbjct: 418 REALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGC 477
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
VV+LL R G + +A+ FI MP P VIW L +C H + +
Sbjct: 478 VVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAE 521
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
ALA + ML AGV N FT L ACA +G VH I FG + + L+D
Sbjct: 89 ALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLD 148
Query: 340 MYAKCGN---IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
+Y +CG + AA VF E ++D+++W ++I G Y A++ F+ M E +
Sbjct: 149 VYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAM----PERN 204
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKA 452
+ ++ G + A FD M PS + + NL+ + G V+ A
Sbjct: 205 VVSWNTLVAGFARVGDMVTAQTVFDRM-------PS--RNAISWNLMISGYASSGDVEAA 255
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ ++M + D V W A+ A D AK
Sbjct: 256 RSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAK 288
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 6/356 (1%)
Query: 135 VSKSVASLSLLSLGRG-LHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
+S SV ++ L LG LH +KSG D FVR L + Y + G+ A FDE P
Sbjct: 44 LSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPR 103
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
++ V L NV++ G + +A +F M ++++ SW ++I G+ G++ A E+
Sbjct: 104 RD----VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREV 159
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F M ++ SW++M++ +++ ++ AL ++ +M A V + T+VS LSAC+ +GAL
Sbjct: 160 FNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGAL 219
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G VH ++ N L +GTAL+DMYAKCG+IE + VF KD+LTW++MI GL
Sbjct: 220 AVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGL 279
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A HG A+ F +M+ G +P+ F+ +L +C + G V +F SM + + P
Sbjct: 280 ANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPK 339
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
V+H+ +V+LL R G +++A I MP PD VIW AL ACR +K+ ++A+ A+
Sbjct: 340 VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAM 395
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 114/247 (46%), Gaps = 6/247 (2%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ DAF + Y + +++ A +++ E + +++ CS +G L E
Sbjct: 165 DRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE 224
Query: 221 LFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ + V V +LID + + GD++ + +F MP K V++W++MI G + +G
Sbjct: 225 VHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGF 284
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC-NDFGLKGAIGT 335
AL++F +ML G++ N+ T + L +C +G + G + + +S + K
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG 344
Query: 336 ALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+VD+ + G+IE A + + E D + W A++ I+ E A + K+
Sbjct: 345 CMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH 404
Query: 395 PDGTVFL 401
DG L
Sbjct: 405 ADGHYVL 411
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 48/258 (18%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I +++ +D A +F+ ++ ++ ++ + + + + M V P+
Sbjct: 143 MIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPD 202
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
T V + + + L++G +H + +GVE D + L DMY + G + +VF
Sbjct: 203 CTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFH 262
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
P K+ VL W+ +I G + G+ A+ LF G+ P +
Sbjct: 263 SMPVKD----VLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLG 318
Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
V + ++D R G +++A +L MP E V W A+
Sbjct: 319 LVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRAL 378
Query: 268 ING--FSQNGE-AEKALA 282
+ +N E AE+A+A
Sbjct: 379 LGACRIYKNVEVAEEAMA 396
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 232/456 (50%), Gaps = 41/456 (8%)
Query: 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
IH +N K L+Q H +I+ L + + I + S + YA S+F H N ++
Sbjct: 23 IHGTN-LKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLH 81
Query: 98 NVLIRGLA---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
N +IR L+ E + I+ + +P+ T+PFV K V +S + GR +H
Sbjct: 82 NTMIRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQ 141
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
V G + V L MY G A KVFDE
Sbjct: 142 AVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDE------------------------- 176
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFS 272
M ++V W +L+ G+ + G++ +A L E MP + VSWT +I+G++
Sbjct: 177 ----------MRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYA 226
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
++G A +A+ +F +ML V ++ T+++ LSACA +G+LE G R+ +Y+ +
Sbjct: 227 RSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ A++DMYAK GNI A VF E++++TWT +I GLA HG +A+ F +M+ +G
Sbjct: 287 LNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAG 346
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+P+ F+AIL+AC + G V L FF+SMR Y I P+++H+ +++LL R G++ +A
Sbjct: 347 VKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREA 406
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I MP + IWG+L A H D + + AL
Sbjct: 407 EEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERAL 442
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 256/495 (51%), Gaps = 15/495 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI + ++ +T + +S + ++ +Q HA I++ L
Sbjct: 210 MVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGL 269
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA IFD K++ +N+LI G + + I
Sbjct: 270 ELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQL 329
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M R +++ + +T + + S L LG+ + C ++ G+E D + DMY + G
Sbjct: 330 MRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGS 389
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A KVFD T +K+ ++LWN L++ + G +A+ LF M + NV +W
Sbjct: 390 IVNAKKVFDSTVQKD----LILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNL 445
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G+ +SWT M+NG QNG +E+A+ +M ++
Sbjct: 446 IILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESR 505
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAA 350
+R N FT+ ALSACA + +L G +H YI N + +I T+LVDMYAKCG+I A
Sbjct: 506 LRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKA 565
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VFG +L + AMI A++G+ +AI ++ + G +PD ++L+ C Y
Sbjct: 566 ERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLS-CNYG 624
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
V A+ F M + ++P ++H+ ++V+LL+ G+ DKAL + +MP PD + +
Sbjct: 625 RDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQS 684
Query: 471 LFCACRTHKDTKIAK 485
LF +C T++ +
Sbjct: 685 LFESCSKQHKTELVE 699
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 210/458 (45%), Gaps = 50/458 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHAQI+ F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 54 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 113
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H + K+G+ + F
Sbjct: 114 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 173
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFD P++N + WN L+ G + G +A+ L M
Sbjct: 174 VASSLADMYGKCGVLDDARKVFDYIPDRN----AVAWNALMVGYVQNGMNEEAIRLLSEM 229
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ + + +++++G + + G +
Sbjct: 230 RKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI 289
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F+ M EK VV+W +I+G+ Q G E+A+ M M ++ + T+ + +SA
Sbjct: 290 EYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAA 349
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
L+ G + Y C GL+ I + VDMYAKCG+I A VF T +KDL+
Sbjct: 350 TSTQNLKLGKEIQCY--CIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLIL 407
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W ++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 408 WNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQ 467
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 468 -SSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES 504
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 14/311 (4%)
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
P K+ L W+ G GY+ KA G+ VAS SL D + + G L A
Sbjct: 140 VPNVCKACGALQWSRFGRGVH--GYVAKA----GLHHCVFVAS--SLADMYGKCGVLDDA 191
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
++F+ +P++ V+W A++ G+ QNG E+A+ + +M G+ TV + LSA A +
Sbjct: 192 RKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 251
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G +E G + H N L +GT++++ Y K G IE A ++F EKD++TW +I
Sbjct: 252 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 311
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G G E+AI + M + D +++A + +KL + +
Sbjct: 312 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKE-IQCYCIRHGL 370
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
E + + V++ ++ G + A + + D ++W L A + D+ ++ AL+
Sbjct: 371 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQ-KDLILWNTLLSA---YADSGLSGEALR 426
Query: 490 SSCSLNL-SIP 499
+ L S+P
Sbjct: 427 LFYEMQLESVP 437
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 230/458 (50%), Gaps = 58/458 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPK 92
IISL + + ++++Q+HAQ ++ L + + + A + S I YA SIF+
Sbjct: 17 IISL-RTCHDFQEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSP 75
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ ++N +IRGL ++ TY FV K+ + L G+ +H
Sbjct: 76 DVFVYNTMIRGLTMDN---------------------FTYTFVLKACSHLKAPFEGKQVH 114
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C I+K+G+ D + L MY G A +V E E+N
Sbjct: 115 CQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENT----------------- 157
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
KN ++I G++ +G + KA ++F+ M K SW+A+I G++
Sbjct: 158 -------------LAKN-----AMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYT 199
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+NG +ALA+F M+ + + N+ +VS LSAC ++G L G +H YI +
Sbjct: 200 KNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTK 259
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ TAL+DMYAK G+IE +F + +D++TW MI AIHG + Q F +M+ G
Sbjct: 260 LTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADG 319
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
P+ +F+AIL+AC ++G V+ +F M + I+PS++H+ +V+LL R G + A
Sbjct: 320 IRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADA 379
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
I MP+ P+ +IWG+L ACRTH D K A ++
Sbjct: 380 EQLILSMPKQPNSIIWGSLLGACRTHNDLKRGTWAFEN 417
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/408 (19%), Positives = 151/408 (37%), Gaps = 64/408 (15%)
Query: 5 VFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
+F R+ + N +N T T ++ + + +Q+H QII + +
Sbjct: 68 IFERIPSPDVFVYNTMIRGLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTH 127
Query: 65 ITTQLI----SSASLHKS---------------------------IDYALSIFDHFTPKN 93
I + LI +S S+ + +D A +FD K+
Sbjct: 128 IHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKD 187
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
++ LI G +N ++ F M+ + PN + + L L GR +H
Sbjct: 188 AASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHA 247
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I K+ V + L DMY + G + +F + ++ V+ W V+I+ + G
Sbjct: 248 YIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRD----VVTWGVMISAFAIHG 303
Query: 214 YLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVV 262
+ K +LF G+ P K + +V+++ G +++ + F QM + +
Sbjct: 304 HASKCFQLFDEMLADGIRPNKVI--FVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIE 361
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+ M++ + G A + M + N S L AC L+ G +
Sbjct: 362 HYGCMVDLLGRAGLLADAEQLILSMPK---QPNSIIWGSLLGACRTHNDLKRGTWAFENL 418
Query: 323 ------SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
S + L G M+A G E A+ + EK+++T
Sbjct: 419 MELEPTSGDRHKLAGL-------MFANAGEKEEAAKIRKMIHEKEMVT 459
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 230/440 (52%), Gaps = 28/440 (6%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I+ A +FD ++L +N ++ G + S + F MLRL + +R +
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L G +HC +++S +E D V+ L DMY + GK A +VF+ KN
Sbjct: 235 CSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKN---- 290
Query: 199 VLLWNVLING--------------------CSKIGYLRKAVELFGMMPKKNVASWV---- 234
++ WN +I G CS+ G L + + G +K ++
Sbjct: 291 IVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLET 350
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+D + + G+LK A +F QM EK +VSW M+ + QN + ++AL MF +L+ ++
Sbjct: 351 ALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKP 410
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ T+ S L A A++ + G ++H+YI G I A+V MYAKCG+++ A F
Sbjct: 411 DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFF 470
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD+++W MI AIHG +IQ+F +M G +P+G+ F+++LTAC SG +
Sbjct: 471 DGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLID 530
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
FF+SM+ +Y I+P ++H+ +++LL R G +D+A FI +MP P IWG+L A
Sbjct: 531 EGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAA 590
Query: 475 CRTHKDTKIAKIALQSSCSL 494
R H D +A++A + SL
Sbjct: 591 SRNHNDVVLAELAARHILSL 610
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 195/440 (44%), Gaps = 68/440 (15%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
AL +F+ + I+NV+IRG N FQ I + M +R + T+PFV K+
Sbjct: 77 ALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGE 136
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L +G+ +H ++K G + D +V L DMY+++G A KVFDE P ++ ++
Sbjct: 137 LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRD----LVS 192
Query: 202 WNVLING-----------------------------------CSKIGYLRKAVELFGMMP 226
WN +++G CS LR +E+ +
Sbjct: 193 WNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVI 252
Query: 227 KK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+ ++ SLID + + G + A +F ++ K +V+W AMI G +
Sbjct: 253 RSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE--------- 303
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
D V + T+++ L +C++ GAL G +H + F + TALVDMY
Sbjct: 304 ------DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYG 357
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG ++ A VF + EK++++W M+ + +Y++A++ F+ ++ +PD +
Sbjct: 358 KCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIAS 417
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN----LLSRVGQVDKALNFINK 458
+L A +LA Y ++ + +T + N + ++ G + A F +
Sbjct: 418 VLPAV-----AELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDG 472
Query: 459 MPETPDFVIWGALFCACRTH 478
M D V W + A H
Sbjct: 473 MV-CKDVVSWNTMIMAYAIH 491
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 11/261 (4%)
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
GF+ G + A ++FE+M W +I G++ NG ++A+ +++M G+R+++FT
Sbjct: 67 GFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFT 126
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ AC ++ AL G +VH + F L + L+DMY K G IE A VF E
Sbjct: 127 FPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+DL++W +M+ G I G ++ FK+M+ G + D ++ L AC ++ +
Sbjct: 187 VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGME 246
Query: 419 FF-DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+R + +E + T ++++ + G+VD A N++ + + V W A+
Sbjct: 247 IHCQVIRSE--LELDIMVQTSLIDMYGKCGKVDYAERVFNRI-YSKNIVAWNAMIGG--M 301
Query: 478 HKDTK-----IAKIALQSSCS 493
+D K I I L SCS
Sbjct: 302 QEDDKVIPDVITMINLLPSCS 322
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 228/464 (49%), Gaps = 60/464 (12%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
D AL +F ++L +N LI GL+ F + F +LR VR
Sbjct: 65 DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124
Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
L VS +V LL GR + + D + Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
Q G+ A +FDE P++N V+ W +I+G ++ G + A +LF +MP++N SW
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240
Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
+++ G+++ G ++ A ELF MPE +G+V +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGT 300
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W+AMI + QN +AL+ F +ML GVR N +V+S L+ CA + L+ G VH +
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F + +AL+ MY KCGN++ A VF + KD++ W +MI G A HG EQA+
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M +G PDG ++ LTAC Y+G+VK F+SM + I P +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G V++A + I MP PD VIWGAL ACR H++ +IA++A
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVA 524
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 19/263 (7%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N I ++ G + A F MP + AS+ +L+ G+ R A LF +MP + +
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ A+I+G S + A + FT S L + G L +R+ +
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + L+D G + A +F E ++D++ WTAM+ G GR +A
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194
Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
F +M P V + A+++ +G+V LA F+ M E + T ++
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVM-----PERNEVSWTAML 243
Query: 441 NLLSRVGQVDKALNFINKMPETP 463
+ G V+ A N MPE P
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHP 266
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/443 (32%), Positives = 226/443 (51%), Gaps = 51/443 (11%)
Query: 88 HFTPKNLH--IFNVLIRG----LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
H + N+ ++N LIR +N F +S ++ M +V P+ T+PF+ +S+ +
Sbjct: 16 HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
GR LH I+ G+ D FV+ L +MY G A + FDE
Sbjct: 76 PHR---GRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDE------------ 120
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ + ++ SW ++I + G + A +LF+QMPEK V
Sbjct: 121 -----------------------ITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNV 157
Query: 262 VSWTAMINGFSQNGEAEKALAMF--FQMLDAG-VRANDFTVVSALSACAKVGALEAGVRV 318
+SW+ MI+G+ GE + AL++F Q L+ +R N+FT+ S LSACA++GAL+ G V
Sbjct: 158 ISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWV 217
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGR 377
H YI + +GT+L+DMYAKCG+IE A +F EKD++ W+AMI ++HG
Sbjct: 218 HAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGL 277
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
E+ ++ F +M+ G P+ F+A+L AC + G V +F M +Y + P ++H+
Sbjct: 278 SEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYG 337
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+V+L SR G+++ A N + MP PD +IWGAL R H D + +IA+ L+ +
Sbjct: 338 CMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPA 397
Query: 498 IPQAMSYCQTFMQQKGDGRTWRE 520
A + G WRE
Sbjct: 398 NSSAYVLLSNVYAKLG---RWRE 417
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 153/365 (41%), Gaps = 76/365 (20%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS------------------------- 71
L+ S N+ + RQ+HAQI+L L + T LI+
Sbjct: 69 LLQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPS 128
Query: 72 -SASLHKS-----IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS- 124
+A +H + I A +FD KN+ ++ +I G +++ +S F + L
Sbjct: 129 WNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEG 188
Query: 125 --VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
+RPN T V + A L L G+ +H I K+G++ D + L DMY + G
Sbjct: 189 SQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248
Query: 183 AFKVFDET-PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI 237
A +FD PEK+ V+ W+ +I S G + +ELF M + N ++V+++
Sbjct: 249 AKCIFDNLGPEKD----VMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+ G + + E F++M + VS + M++ +S+ G E A
Sbjct: 305 CACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDA------------ 352
Query: 293 RANDFTVVSALSACAKV---GALEAGVRVHNYISCNDFG------LKGAIGTALV---DM 340
+ VV ++ V GAL G R+H + + L A +A V ++
Sbjct: 353 ----WNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNV 408
Query: 341 YAKCG 345
YAK G
Sbjct: 409 YAKLG 413
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 117/288 (40%), Gaps = 22/288 (7%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
++ S N T + ++S + + + +HA I + + T LI +
Sbjct: 185 TLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 244
Query: 78 SIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
SI+ A IFD+ P K++ ++ +I + + + C+ F M+ VRPN +T+ V
Sbjct: 245 SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETPE 192
+ L+S G ++ EY + + D+Y + G+ A+ V P
Sbjct: 305 CACVHGGLVSEGNEYFKRMMN---EYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPM 361
Query: 193 KNKSESVLLWNVLINGCSKIGYLRK---AVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
+ V++W L+NG G + A+ + N +++V L + + + G ++
Sbjct: 362 E---PDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREV 418
Query: 250 GELFEQMPEKGV--------VSWTAMINGFSQNGEAEKALAMFFQMLD 289
L + M +G+ V +I F + L + MLD
Sbjct: 419 RHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLD 466
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 154/507 (30%), Positives = 232/507 (45%), Gaps = 70/507 (13%)
Query: 64 RITTQLISSASLHKSIDYALS--IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
RI L S H + A+S F F + N+LIR A + + + F +L
Sbjct: 29 RIIPHLPS----HPKLAAAVSSLYFPLFPSSATFLHNLLIRASAASPSPRLSFAAFSSLL 84
Query: 122 RLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL--- 177
R P+ T+P ++KS + S G +H + G+ DAF L MY L
Sbjct: 85 RSGHLPDHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAALRDA 144
Query: 178 -----------------------------GKTRGAFKVFDETPEKNKS------------ 196
G+ A + FD P +N +
Sbjct: 145 ASMRGVLESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAA 204
Query: 197 -----------------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
SV+ WN ++ G ++ G L A ++F MP +N+ SW +++ G
Sbjct: 205 GQLDVARDMFDRAPAAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMVRG 264
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ GD+ A ELF+ MPEK VVSWT M++G+++ G +AL +F M VR N+ T+
Sbjct: 265 YAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTM 324
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGET 357
VS SACA++ AL+ G H +I L +G AL+DMYAKCG + A+ VF
Sbjct: 325 VSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSL 384
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K++ W A+I GLA +G + I F++M S +PD F+++L AC +G V
Sbjct: 385 DRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGR 444
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F SM + ++P +KH+ +V+LL R G VD+A + MP PD + L ACR
Sbjct: 445 RCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVLATLLGACRV 504
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSY 504
+ +A+ + SLN P SY
Sbjct: 505 RRRPDVAERVRRRIQSLNTKQPSRESY 531
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQI-----ILHNLFASSRITTQLISS 72
++S N +T + S + K+ R HA I +L + F + LI
Sbjct: 311 TMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGF---NLGAALIDM 367
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ D A +F KN+ +N LI GLA N + CI F M +P+ +T+
Sbjct: 368 YAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTF 427
Query: 133 PFVSKSVASLSLLSLGR 149
V + A L+ GR
Sbjct: 428 VSVLAACARAGLVDEGR 444
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 248/498 (49%), Gaps = 56/498 (11%)
Query: 40 SSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALS--IFDHFTP-KNLH 95
S++S + R +HA+I+ + + LI+ ++ +D+ S + TP +N+
Sbjct: 18 STSSMRLGRVVHARIVKTLDSPPPPFLANYLIN---MYSKLDHPESARLVLRLTPARNVV 74
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ L+ GLA+N HF + + F M R V PN T+P V K+VASL L G+ +H L
Sbjct: 75 SWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALA 134
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
VK G D FV DMY + A K+FDE PE+N + WN I+ G
Sbjct: 135 VKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAYISNSVTDGRP 190
Query: 216 RKAVELF------GMMPKK---------------------------------NVASWVSL 236
++A+E F G P +V+ + L
Sbjct: 191 KEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGL 250
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
ID + + ++ + +F +M K VSW +++ + QN E EKA ++ + V +D
Sbjct: 251 IDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSD 310
Query: 297 FTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
F + S LSACA + LE G +H + +C + + +G+ALVDMY KCG IE + F
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERNI--FVGSALVDMYGKCGCIEDSEQAF 368
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFLAILTACWYSGQ 412
E EK+L+T ++I G A G+ + A+ F+ M G P+ F+++L+AC +G
Sbjct: 369 DEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGA 428
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ + FDSM+ Y IEP +H++ +V++L R G V++A FI KMP P +WGAL
Sbjct: 429 VENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQ 488
Query: 473 CACRTHKDTKIAKIALQS 490
ACR H + +A ++
Sbjct: 489 NACRMHGKPHLGILAAEN 506
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/514 (30%), Positives = 248/514 (48%), Gaps = 54/514 (10%)
Query: 1 MKGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHS--------------SNSTKQ 46
MK F +T + +T +SH SN I + L S SN+
Sbjct: 1 MKNAKFCYVTPCMLSSTKTYTSHAHSNPILPPNEEYLFRSTAAALSSALQDHINSNTPFH 60
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
++IHA I+ ++ ++ +L+ + YA +FD + L +N LI G +
Sbjct: 61 GQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLK 120
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL----GRGLHCLIVKSGVEY 162
Q ++ ++ RP+ TY + K+ S ++L G +H I+KS VE
Sbjct: 121 LGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEP 180
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D + L D YV+ G+ +GY RK +F
Sbjct: 181 DDVLYTALVDSYVKSGR--------------------------------VGYARK---VF 205
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-AEKAL 281
MM +KNV S+I G+M +G ++ A E+FE+ EK VV + AMI G+S++ + AEKAL
Sbjct: 206 DMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKAL 265
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
++ +M G R N T S + AC+ + E G +V + +F G+AL+DMY
Sbjct: 266 EVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMY 325
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+KCG IE A F + EK++ +W++MI G +GR ++A+Q F KM EP+ FL
Sbjct: 326 SKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFL 385
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
L+AC ++G V F+SM +Y ++P ++H+ +V+LL R G ++ A F+ MPE
Sbjct: 386 GALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMVDLLGRAGSLNLAWEFVMGMPE 445
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
P +W AL AC H + ++A +A LN
Sbjct: 446 KPSSDVWAALLSACNLHGNVEMASVAANELFKLN 479
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 16/228 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+ Q++ F + + + LI S I+ A F+ KN+ ++ +I G +N
Sbjct: 300 QQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKN 359
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-----VKSGVEY 162
+ F M + PN +T+ + L+S GR + + +K G+E+
Sbjct: 360 GRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEH 419
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV--- 219
A + D+ + G A++ PEK S+ +W L++ C+ G + A
Sbjct: 420 YAC----MVDLLGRAGSLNLAWEFVMGMPEKPSSD---VWAALLSACNLHGNVEMASVAA 472
Query: 220 -ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
ELF + + ++V+L + G E+ E M +G++ T
Sbjct: 473 NELFKLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTG 520
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 233/445 (52%), Gaps = 33/445 (7%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---V 125
++S + + +D A S+FD KN +N L+ +NS + +F R + V
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC--MLFKSRENWALV 220
Query: 126 RPNRLTYPFVSK----------------SVASLSLLSLGRG-------LHCLIVKSGVEY 162
N L FV K V S + + G L +S V+
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ- 279
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y+Q A ++FD+ PE+N+ + WN ++ G + + A ELF
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSWNAMLAGYVQGERMEMAKELF 335
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+MP +NV++W ++I G+ + G + +A LF++MP++ VSW AMI G+SQ+G + +AL
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F QM G R N + SALS CA V ALE G ++H + + +G AL+ MY
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+IE A+ +F E KD+++W MI G + HG E A+++F+ M G +PD +A
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V +F +M DY + P+ +H+ +V+LL R G ++ A N + MP
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 463 PDFVIWGALFCACRTHKDTKIAKIA 487
PD IWG L A R H +T++A+ A
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETA 600
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 45/325 (13%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ G+ A +VF P S + +N +I+G + G A +LF MP++++ SW
Sbjct: 74 YMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+I G++R +L KA ELFE MPE+ V SW M++G++QNG + A ++F +M +
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE---- 185
Query: 294 ANDFTVVSALSACAKVGALEAG----------------------VRVHNYISCNDF---- 327
ND + + LSA + +E V+ + F
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 328 GLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ + ++ YA+ G I+ A +F E+ +D+ TWTAM+ G + E+A + F
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
KM E + + A+L ++++A FD M +V ++ ++
Sbjct: 306 KM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPC-----RNVSTWNTMITGYAQC 356
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
G++ +A N +KMP+ D V W A+
Sbjct: 357 GKISEAKNLFDKMPKR-DPVSWAAM 380
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 158/340 (46%), Gaps = 22/340 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP- 127
+IS + + A +FD ++L +NV+I+G N + F M V
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N + + + R + K+ V ++A L YVQ K A +F
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDR----MPEKNDVSWNA-----LLSAYVQNSKMEEACMLF 211
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ ++ +++ WN L+ G K + +A + F M ++V SW ++I G+ + G +
Sbjct: 212 ----KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +LF++ P + V +WTAM++G+ QN E+A +F +M + N+ + + L+
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYV 323
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ +E + + + C + + ++ YA+CG I A +F + ++D ++W A
Sbjct: 324 QGERMEMAKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
MI G + G +A++ F +M G + + F + L+ C
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 22/286 (7%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WNV I+ + G +A+ +F MP+ + S+ +I G++R G+ + A +LF++MPE+ +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW MI G+ +N KA +F M + V + + LS A+ G ++ V +
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDDARSVFDR 182
Query: 322 I-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ ND AL+ Y + +E A ++F + L++W ++ G + +
Sbjct: 183 MPEKNDVSW-----NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVE 237
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVV 439
A Q+F M D + I+T SG++ A FD S D F T +
Sbjct: 238 ARQFFDSM----NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT------WTAM 287
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
V+ + V++A +KMPE + V W A+ + ++AK
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNE-VSWNAMLAGYVQGERMEMAK 332
>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 1028
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 221/444 (49%), Gaps = 16/444 (3%)
Query: 69 LISSASLHKSIDYALSIFDHF----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
L+SS + +D A+ + + ++ + L+ G + F M
Sbjct: 276 LVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAG 335
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V PN +T + ASL LLS G LHC +K G + L DMY + G+ A
Sbjct: 336 VEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAK 395
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
+VFDE PEK+ + WN ++ G ++ GY KA ELF M ++NV +W +I G+
Sbjct: 396 RVFDEIPEKD----IFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGY 451
Query: 241 MRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+R GD ++A ELF+ M GV SW A+I G NG +++AL +F+QM VR +
Sbjct: 452 IRNGDDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDF 511
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T++S + A A + +H I N+ + G I AL++ Y+K G++ A VF
Sbjct: 512 ITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDR 571
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+++++W +I +HG +A+ F +M G PD T A++ A G+V A
Sbjct: 572 HSSRNIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEA 631
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
F +M DY I P + H+T +V+LL R G + +A FI MP P+ +W AL A
Sbjct: 632 KRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAAT 691
Query: 477 THKDTKIAKIALQSSCSLNLSIPQ 500
H + ++A + + SL+ S P+
Sbjct: 692 IHGNARLANLTARELSSLDPSDPR 715
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 198/424 (46%), Gaps = 38/424 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T+LI+ S + A +F+ ++L ++ +I A ++ ++ V M+R V
Sbjct: 103 TKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAMVREGVI 162
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD----MYVQLGKTRG 182
P+R + ++ A L LG +H L ++ G + V + + MYV+ G+
Sbjct: 163 PDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGR 222
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
A FD +++ + WN +I GC + +A L M ++ + +W +L+
Sbjct: 223 ARAAFDMMGQRD----LCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVS 278
Query: 239 GFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+ R G+L A E+ EQM E G VV+WT++++GF +AL F +M AGV
Sbjct: 279 SYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEP 338
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-----GTALVDMYAKCGNIEA 349
N T+ SA+SACA + L G+ +H C+ + G++ G +LVDMYAKCG I A
Sbjct: 339 NGMTIASAISACASLRLLSQGMELH----CHAIKV-GSVNNVLSGNSLVDMYAKCGEIIA 393
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF E EKD+ +W +M+ G A G +A + F +M G + + +++
Sbjct: 394 AKRVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIR 453
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPE---T 462
+G + A F M VK T N L G D+AL +M
Sbjct: 454 NGDDERAFELFQMME-----SCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVR 508
Query: 463 PDFV 466
PDF+
Sbjct: 509 PDFI 512
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 37/206 (17%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
++R+IHA I +NL +I LI++ S + A ++FD + +N+ +N +I
Sbjct: 529 KVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHL 588
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F M + VRP+ T V K+
Sbjct: 589 LHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKA--------------------------- 621
Query: 166 VRVHLADMYVQLGKTRGAFKVF-DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
Y GK A ++F + T + N + + +++ + G L++A E G
Sbjct: 622 --------YGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGN 673
Query: 225 MPK-KNVASWVSLIDGFMRKGDLKKA 249
MP N+A W +L+ G+ + A
Sbjct: 674 MPLIPNLAVWEALLTAATIHGNARLA 699
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 228/440 (51%), Gaps = 41/440 (9%)
Query: 59 LFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
LF +++++ +LH S + YA +F+ N +IRG + + I
Sbjct: 6 LFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILF 65
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
+ M+ + P+R T+P + KS +L G+ LHC K G DA+++ L +MY
Sbjct: 66 YQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMY-- 120
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
S G L A ++F M K+V SW ++
Sbjct: 121 ---------------------------------SNCGCLVSARKVFDKMVNKSVVSWATM 147
Query: 237 IDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
I + + +A +LF +M + W MING ++ + E+AL++F +M +GV+ +
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T+ S L AC +GALE G +H YI + A+GTALVDMYAKCG+IE+A VF
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 267
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E EKD++TWTA+I GLA+ G+ +A++ F +M S +PD F+ +L AC ++G V
Sbjct: 268 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 327
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ +F+SM Y I+PS++H+ +V++L R G++ +A + I MP PD+ + L AC
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387
Query: 476 RTHKDTKIAKIALQSSCSLN 495
R H + +A+ A Q L+
Sbjct: 388 RIHGNLVVAERAAQQLIELD 407
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 259/533 (48%), Gaps = 43/533 (8%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
+A+ ++++ N+IT ++S+ S ++ Q+H +I + L
Sbjct: 55 NSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANAL 114
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
++ S + AL +F+ N+ +N +I G +N F M+ V P+
Sbjct: 115 VAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDS 174
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
+T+ SV + L G+ +H I++ G+ D F++ L D+Y + A K+F +
Sbjct: 175 ITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQ 234
Query: 190 T--------------------------------PEKNKSESVLLWNVLINGCSKIGYLRK 217
+ EK +V L +VL C+ + L
Sbjct: 235 STNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVL-PACAGLATLNL 293
Query: 218 AVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
EL G+ +++V S +++D + + G L A ++F +MPEK V W A+I
Sbjct: 294 GKELHANILKHGLDERRHVGS--AIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNC 351
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
SQNG+ ++A+ +F QM G+ + ++ +ALSACA + AL G +H+++ F +
Sbjct: 352 SQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEV 411
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+AL+DMY KCGN+ A VF +EK+ ++W ++I HG E ++ F KM+
Sbjct: 412 FAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLED 471
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +PD FL IL+AC ++GQV + +F M +Y I ++H+ +V+L R G++++
Sbjct: 472 GIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNE 531
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
A I MP +PD +WG L ACR H + ++A++A S C L+L + Y
Sbjct: 532 AFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVA--SRCLLDLDPENSGCY 582
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 175/394 (44%), Gaps = 56/394 (14%)
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G D FV L +Y + G A ++FD+ P K+ +LWNV++NG K G A
Sbjct: 2 GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKD----CVLWNVMLNGFVKCGEPNSA 57
Query: 219 VELFGMM----PKKNVASWVS-----------------------------------LIDG 239
V++F M K N ++ S L+
Sbjct: 58 VKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAM 117
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G L A +LF MP+ VV+W MI GF QNG ++A +F +M+ AGV + T
Sbjct: 118 YSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITF 177
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S L + + +L+ G +H YI + L + +AL+D+Y KC ++ A +F ++
Sbjct: 178 ASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTN 237
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
D++ TA+I G ++G A++ F+ ++ P+ ++L AC + L
Sbjct: 238 VDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKEL 297
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
++ + ++ + ++++ ++ G++D A +MPE D V W A+ C +
Sbjct: 298 HANI-LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNG 355
Query: 480 DT--------KIAKIALQSSCSLNLSIPQAMSYC 505
++ + L C +SI A+S C
Sbjct: 356 KPQEAIDLFRQMGREGLSYDC---VSISAALSAC 386
>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 876
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 221/444 (49%), Gaps = 16/444 (3%)
Query: 69 LISSASLHKSIDYALSIFDHF----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
L+SS + +D A+ + + ++ + L+ G + F M
Sbjct: 276 LVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAG 335
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V PN +T + ASL LLS G LHC +K G + L DMY + G+ A
Sbjct: 336 VEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAK 395
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
+VFDE PEK+ + WN ++ G ++ GY KA ELF M ++NV +W +I G+
Sbjct: 396 RVFDEIPEKD----IFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGY 451
Query: 241 MRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+R GD ++A ELF+ M GV SW A+I G NG +++AL +F+QM VR +
Sbjct: 452 IRNGDDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDF 511
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T++S + A A + +H I N+ + G I AL++ Y+K G++ A VF
Sbjct: 512 ITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDR 571
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+++++W +I +HG +A+ F +M G PD T A++ A G+V A
Sbjct: 572 HSSRNIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEA 631
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
F +M DY I P + H+T +V+LL R G + +A FI MP P+ +W AL A
Sbjct: 632 KRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAAT 691
Query: 477 THKDTKIAKIALQSSCSLNLSIPQ 500
H + ++A + + SL+ S P+
Sbjct: 692 IHGNARLANLTARELSSLDPSDPR 715
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 198/424 (46%), Gaps = 38/424 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T+LI+ S + A +F+ ++L ++ +I A ++ ++ V M+R V
Sbjct: 103 TKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAMVREGVI 162
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD----MYVQLGKTRG 182
P+R + ++ A L LG +H L ++ G + V + + MYV+ G+
Sbjct: 163 PDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGR 222
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
A FD +++ + WN +I GC + +A L M ++ + +W +L+
Sbjct: 223 ARAAFDMMGQRD----LCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVS 278
Query: 239 GFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+ R G+L A E+ EQM E G VV+WT++++GF +AL F +M AGV
Sbjct: 279 SYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEP 338
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-----GTALVDMYAKCGNIEA 349
N T+ SA+SACA + L G+ +H C+ + G++ G +LVDMYAKCG I A
Sbjct: 339 NGMTIASAISACASLRLLSQGMELH----CHAIKV-GSVNNVLSGNSLVDMYAKCGEIIA 393
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF E EKD+ +W +M+ G A G +A + F +M G + + +++
Sbjct: 394 AKRVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIR 453
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPE---T 462
+G + A F M VK T N L G D+AL +M
Sbjct: 454 NGDDERAFELFQMME-----SCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVR 508
Query: 463 PDFV 466
PDF+
Sbjct: 509 PDFI 512
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 37/206 (17%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
++R+IHA I +NL +I LI++ S + A ++FD + +N+ +N +I
Sbjct: 529 KVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHL 588
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + F M + VRP+ T V K+
Sbjct: 589 LHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKA--------------------------- 621
Query: 166 VRVHLADMYVQLGKTRGAFKVF-DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
Y GK A ++F + T + N + + +++ + G L++A E G
Sbjct: 622 --------YGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGN 673
Query: 225 MPK-KNVASWVSLIDGFMRKGDLKKA 249
MP N+A W +L+ G+ + A
Sbjct: 674 MPLIPNLAVWEALLTAATIHGNARLA 699
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 248/486 (51%), Gaps = 55/486 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H+ + L + L+S + + +D A +F+ +L +N +I G +N
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNG 322
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F MLR RP+ +T + ++ L+ L G+ +H I+++ V DAF+
Sbjct: 323 LLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVS 382
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L D+Y + R A ++D ++ V++ + +I+G G KA+++F + ++
Sbjct: 383 ALVDIYFKCRDVRTARNLYDAA----RAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQ 438
Query: 229 -------NVASWV--------------------------------SLIDGFMRKGDLKKA 249
VAS + +L+D + + G L +
Sbjct: 439 CIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLS 498
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F +M K V+W +MI+ FSQNGE ++AL +F QM G++ N+ T+ SALSACA +
Sbjct: 499 HYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASL 558
Query: 310 GALEAGVRVHNYISCNDFGLKGAIG------TALVDMYAKCGNIEAASLVFGETKEKDLL 363
A+ G +H I +KG I +AL+DMYAKCGN+E A VF +K+ +
Sbjct: 559 PAIYYGKEIHGVI------IKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEV 612
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W ++I HG ++++ + +M G +PD FLA+++AC ++G V+ L F M
Sbjct: 613 SWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCM 672
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+Y I P ++H +V+L SR G++DKA+ FI MP PD IWGAL ACR H++ ++
Sbjct: 673 TKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVEL 732
Query: 484 AKIALQ 489
A IA Q
Sbjct: 733 ADIASQ 738
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 131/516 (25%), Positives = 229/516 (44%), Gaps = 66/516 (12%)
Query: 49 QIHAQIIL------HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH----IFN 98
QIHA+ ++ HN A + T+L+ L + A+++F P+ +N
Sbjct: 53 QIHARAVVSGALSNHNHLA---LHTRLLGMYVLARRFRDAVAVFSAL-PRAAAGSSLPWN 108
Query: 99 VLIRGLAENSHFQSCISHFVFMLR--LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
LIRG H + +V M + P+ T P+V KS A+L +SLGR +H
Sbjct: 109 WLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTAR 168
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+G+ D +V L MY G R A FD P ++ +LWNV+++G K G +
Sbjct: 169 ATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRD----CVLWNVMMDGYIKAGDVG 224
Query: 217 KAVELF------GMMP---------------------------------KKNVASWVSLI 237
AV LF G P ++ VA +L+
Sbjct: 225 GAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLL 284
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ + L A LFE +P +V+W MI+G QNG ++AL +F ML +G R +
Sbjct: 285 SMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSV 344
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+VS L A + L+ G VH YI N + + +ALVD+Y KC ++ A ++
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAA 404
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ D++ + +I G ++G E+A+Q F+ ++ +P+ ++L AC + L
Sbjct: 405 RAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQ 464
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ + + E + ++++ ++ G++D + +KM D V W ++ +
Sbjct: 465 EIHGYVLRNAY-EGKCYVESALMDMYAKCGRLDLSHYIFSKM-SLKDEVTWNSMISSFSQ 522
Query: 478 HKDTKIAKIALQSSCSL-----NLSIPQAMSYCQTF 508
+ + + A + C N++I A+S C +
Sbjct: 523 NGEPQEALDLFRQMCMEGIKYNNVTISSALSACASL 558
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 213/476 (44%), Gaps = 57/476 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H L + + + LI S + A FD ++ ++NV++ G +
Sbjct: 161 RLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKA 220
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYP-FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ F M PN T F+S A LLS G LH L VK G+E + V
Sbjct: 221 GDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLS-GVQLHSLAVKCGLEQEVAV 279
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L MY + A+++F+ P + ++ WN +I+GC + G L +A+ LF
Sbjct: 280 ANTLLSMYAKCRCLDDAWRLFELLPR----DDLVTWNGMISGCVQNGLLDEALGLFCDML 335
Query: 223 ----------------------GMMPKKNVASWV-------------SLIDGFMRKGDLK 247
G+ K V ++ +L+D + + D++
Sbjct: 336 RSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVR 395
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A L++ VV + +I+G+ NG +EKAL MF +L+ ++ N TV S L ACA
Sbjct: 396 TARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ AL G +H Y+ N + K + +AL+DMYAKCG ++ + +F + KD +TW +
Sbjct: 456 SISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNS 515
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-----YSGQVKLALNFFDS 422
MI + +G ++A+ F++M G + + + L+AC Y G+ +
Sbjct: 516 MISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGP 575
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
++ D F E + ++++ ++ G ++ AL MP+ + V W ++ A H
Sbjct: 576 IKADIFAE------SALIDMYAKCGNMELALRVFEFMPDKNE-VSWNSIISAYGAH 624
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 192/405 (47%), Gaps = 48/405 (11%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
++S +P +++T ++ + N KQ +++H II + + + + + L+ +
Sbjct: 335 LRSGARP-DSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRD 393
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +++D ++ I + +I G N + + F ++L ++PN +T V +
Sbjct: 394 VRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPA 453
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
AS+S L LG+ +H ++++ E +V L DMY + G+ + +F + K++
Sbjct: 454 CASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE--- 510
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----------------------P---------- 226
+ WN +I+ S+ G ++A++LF M P
Sbjct: 511 -VTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHG 569
Query: 227 -------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
K ++ + +LID + + G+++ A +FE MP+K VSW ++I+ + +G ++
Sbjct: 570 VIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
+++ +M + G + + T ++ +SACA G +E G+++ ++ ++ + + +
Sbjct: 630 SVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMT-KEYLIAPRMEHFACM 688
Query: 338 VDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQA 381
VD+Y++ G ++ A + K D W A++ +H E A
Sbjct: 689 VDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELA 733
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 194/327 (59%), Gaps = 17/327 (5%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
YVQ G A +F PE+N V+ W V++ G + G + +A +LF MMP K+V +
Sbjct: 66 YVQEGLIEEAELLFWRMPERN----VVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-------------FSQNGEAEKA 280
++IDG +G L +A E+F++MP++ VV+WT+MI+G + + G +A
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEA 181
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
LA+F M GVR + +V+S LS C + +L+ G +VH+ + + F + + + L+ M
Sbjct: 182 LALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITM 241
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y KCG++ A VF KD++ W ++I G A HG E+A++ F M S PD F
Sbjct: 242 YIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITF 301
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +L+AC Y+G+VK L F+SM+ Y ++P +H+ +V+LL R G++++A+N I MP
Sbjct: 302 IGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMP 361
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIA 487
D ++WGAL ACRTHK+ +A+IA
Sbjct: 362 VEADAIVWGALLGACRTHKNLDLAEIA 388
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 64/321 (19%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y Q + R A K+FD+ PE N + WN L++G + G + +A ++F MP++NV SW
Sbjct: 4 YFQNKRPREARKLFDKMPETN----TISWNGLVSGYVQNGMISEARKVFDKMPERNVVSW 59
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++I G++++G +++A LF +MPE+ VVSWT M+ G ++G ++A +F M V
Sbjct: 60 TAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVV 119
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
A+ T ++D G + A +
Sbjct: 120 AS---------------------------------------TNMIDGLCSEGRLIEAREI 140
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK-------------MMYSGTEPDGTVF 400
F E +++++ WT+MI G G + I+ +++ M G P
Sbjct: 141 FDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSV 200
Query: 401 LAILTACWYSGQVKLALNFFDSM---RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+++L+ C + + +FD I S +V++ + + G + A +
Sbjct: 201 ISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS----SVLITMYIKCGDLVTAKRVFD 256
Query: 458 KMPETPDFVIWGALFCACRTH 478
+ + D V+W ++ H
Sbjct: 257 RF-SSKDIVMWNSIIAGYAQH 276
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 34/305 (11%)
Query: 25 PSNNITE-THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
P N+ T ++ + + RQ+ + + ++ AS+ + L S L + A
Sbjct: 83 PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIE----AR 138
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCI-------------SHFVFMLRLSVRPNRL 130
IFD +N+ + +I G ++ + + I + F M R VRP+
Sbjct: 139 EIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFP 198
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+ V SL+ L GR +H +V+S + D +V L MY++ G A +VFD
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFD-- 256
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDL 246
+ S+ +++WN +I G ++ G+ KA+E+F M ++A +++ ++ G +
Sbjct: 257 --RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKV 314
Query: 247 KKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
K+ E+FE M K V + M++ + G+ +A+ + M V A+ +
Sbjct: 315 KEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGA 371
Query: 302 ALSAC 306
L AC
Sbjct: 372 LLGAC 376
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 39/150 (26%)
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G+ + ++A +LF++MPE +SW +++G+ QNG +A +F +M +
Sbjct: 3 GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPE--------- 53
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
N +S TA++ Y + G IE A L+F
Sbjct: 54 --------------------RNVVSW----------TAMIRGYVQEGLIEEAELLFWRMP 83
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
E+++++WT M+ GL GR ++A Q F M
Sbjct: 84 ERNVVSWTVMLGGLIEDGRVDEARQLFDMM 113
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 241/467 (51%), Gaps = 48/467 (10%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
+LF + + + + L +A +FD + K++ + +I G A N+ I+ F
Sbjct: 186 DLFVQNGLIQNYVETGCL----GFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALF 241
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
ML V+PN +T + + + +G+ LH I + + + + DMYV
Sbjct: 242 NSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYV-- 299
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
K G L A E+F M +++V SW SL+
Sbjct: 300 ---------------------------------KCGCLTTAREIFNNMERRDVFSWTSLL 326
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRAND 296
+G+ + GDL A +LF++MPE+ +VSW AMI G+SQN + +AL +F M+D G+ +
Sbjct: 327 NGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTE 386
Query: 297 FTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLV 353
T+V LSA ++G LE G +H N++ N G++ ++ A++DMYAKCG+I+AA+ +
Sbjct: 387 DTLVCVLSASGQLGCLEMGQEIHCNHV--NKIGIQVSLILKNAVMDMYAKCGSIDAAAKL 444
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F EK+L++W +MI A +G ++A+ F +M+ SG +PD F+ +L+AC Y G V
Sbjct: 445 FHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFV 504
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
F+SM + +EP +H+ +V+LLSRVG + +A I++MP WGAL
Sbjct: 505 SEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLD 564
Query: 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
ACR H + ++AK+A + L+ P+ DG+ W++
Sbjct: 565 ACRKHGNVEMAKLAGEKLLELD---PEDSGIYSLLANICADGKKWKD 608
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 8/288 (2%)
Query: 191 PEKNKSESVLLWN---VLINGCSKIGYLRKA---VELFGMMPKKNVASWVSLIDGFMRKG 244
P+ N +V + N +++ CS + L++ + G+M + AS + G
Sbjct: 41 PKWNSLSNVFISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSG 100
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D+ A +F+Q W MI G+ + + F QM+ + + V AL
Sbjct: 101 DIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALK 160
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC + G+ VH+ I F + L+ Y + G + A +F E+ KD++T
Sbjct: 161 ACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVT 220
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
WT MI G A + ++AI F M+ S +P+ +A+L+AC G ++ + +R
Sbjct: 221 WTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIR 280
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
I S+ ++++ + G + A N M E D W +L
Sbjct: 281 RKD-ITCSLNLLNAMLDMYVKCGCLTTAREIFNNM-ERRDVFSWTSLL 326
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 154/477 (32%), Positives = 244/477 (51%), Gaps = 27/477 (5%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDH--FTP 91
SL++ +S +L+Q+ A I L + +TT+LI S+ S ++ +A S+F H
Sbjct: 11 SLLNKLSSISELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSSILI 70
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS---------- 141
N I N +IR + + + + ML +V + T FV K+ +
Sbjct: 71 HNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQESGS 130
Query: 142 ------LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ + + G +HC ++K G + D V+ L Y Q G A +FD+ K
Sbjct: 131 CDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARHLFDQI----K 186
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S++ WN++I+ + A L +MP K V SW +LI ++R GD++ A +F
Sbjct: 187 DTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLIARYIRLGDVQAARRVFGC 246
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ VSW +MI G + AL +F +M +AGV+ + T++S L ACA+ GALE G
Sbjct: 247 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 306
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+++ + + ++ +G ALV+MY KCGN+ A +F K K + W AM+ GLA+H
Sbjct: 307 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 366
Query: 376 GRYEQAIQYFKKMMYS---GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
G E+ Q F +M S PD F+ +L AC + G V A +FD M Y I P
Sbjct: 367 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 426
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
KH+ +V+LLSR G +++A I P V+W L ACRT +T++A+I+ +
Sbjct: 427 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 483
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 246/460 (53%), Gaps = 39/460 (8%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
N+ +S+R+ T I S L+ AL +F+ T K +N ++ G + N + ++
Sbjct: 4 NVISSNRVITNHIRSGDLNS----ALRVFESMTVKTTVTWNSMLAGYS-NRRGKIKVARQ 58
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA--FVRVHLADM-- 173
+F +R+ P + S L C + + VE F ++ + D
Sbjct: 59 LF--------DRIPEP---------DIFSYNIMLACYLHNADVESARLFFDQMPVKDTAS 101
Query: 174 -------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
+ Q G A ++F P +N + WN +I+G + G L A +LF + P
Sbjct: 102 WNTMISGFSQNGMMDQARELFLVMPVRNS----VSWNAMISGYVESGDLDLAKQLFEVAP 157
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++V +W ++I GFM+ G ++ A + FE+MP K +V+W AMI G+ +N +AE L +F +
Sbjct: 158 VRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKR 217
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+++G R N ++ S L C+ + AL+ G +VH I + GT+L+ MY KCG+
Sbjct: 218 MVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGD 277
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+E A +F +KD++TW AMI G A HG E+A+ F KM G +PD F+A+L+A
Sbjct: 278 LEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSA 337
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C ++G V L + +F+SM DY +E H+T VV+LL R G++ +A++ I KMP P
Sbjct: 338 CNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSA 397
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506
I+G L ACR HK+ ++A+ A ++ LNL A Y Q
Sbjct: 398 IFGTLLGACRIHKNLELAEFAAKN--LLNLDPESAAGYVQ 435
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 51/364 (14%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ I+ A F+ KNL +N +I G EN ++ + F M+ R
Sbjct: 165 TAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFR 224
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN + V ++LS L LG+ +H LI KS V ++ L MY + G A+K+
Sbjct: 225 PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F P+K+ V+ WN +I+G ++ G KA+ LF M K + ++V+++
Sbjct: 285 FLVMPQKD----VVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNH 340
Query: 243 KGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + E F M + GV + +T +++ + G+ +A+ + +M F
Sbjct: 341 AGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKM--------PF 392
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIE 348
SA+ G L R+H + +F K + L ++YA +
Sbjct: 393 KPHSAI-----FGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWD 447
Query: 349 AASLVFGETKEKDLLTWTAMIW------------GLAIHGR----YEQAIQYFKKMMYSG 392
++V K+ ++ W G IH +E+ + +KM +G
Sbjct: 448 HVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAG 507
Query: 393 TEPD 396
PD
Sbjct: 508 YVPD 511
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 220/436 (50%), Gaps = 45/436 (10%)
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNR 129
++ S + YA +FD N +N LIRG A++S S H V +R + V P+
Sbjct: 5 AAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSS-IPSYSLHLVNQMRQNGVDPDE 63
Query: 130 LTYPFVSKSVA--------SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
T+ F+ K+ + +L L+ +H ++K G FVR L +Y G
Sbjct: 64 FTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPV 123
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A++VFDET +G +V SW L+ +
Sbjct: 124 VAWRVFDET---------------------VGV--------------DVVSWSGLVLAHV 148
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R G+L++A +F+QMPE+ VVSWT M++ +SQ + +AL ++ MLD GVR ++ T+VS
Sbjct: 149 RAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVS 208
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
+SAC +G L+ G VH+YI N F ++ AL+DMYAKCG ++ A VF K
Sbjct: 209 VISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKS 268
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
L+TW +MI A + E A F +M G PDG FLA+LTA + G V F+
Sbjct: 269 LVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFE 328
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM+ D+ IE ++H+ VVN+L + G +++A I MP + V+WG L ACR H D
Sbjct: 329 SMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDV 388
Query: 482 KIAKIALQSSCSLNLS 497
+ + ++ L L
Sbjct: 389 YMGERVVKKLLELKLD 404
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 235/445 (52%), Gaps = 33/445 (7%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ-SCISHFVFMLRLS--- 124
++S + + +D A +FD KN +N L+ +NS + +C+ +F R +
Sbjct: 158 ILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACV---LFGSRENWAL 214
Query: 125 VRPNRLTYPFVSK----------------SVASLSLLSLGRGLHCLIVKS------GVEY 162
V N L FV K V S + + G + I ++ +
Sbjct: 215 VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH 274
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y+Q A ++FD PE+N+ + WN ++ G + + A ELF
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRMPERNE----VSWNAMLAGYVQGERVEMAKELF 330
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+MP +NV++W ++I G+ + G + +A LF++MP++ VSW AMI G+SQ+G + +AL
Sbjct: 331 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F M G R N + SALS CA V ALE G ++H + + +G AL+ MY
Sbjct: 391 LFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 450
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+IE A+ +F E KD+++W MI G + HG E+A+++F+ M G +PD +A
Sbjct: 451 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVA 510
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V +F +M DY + P+ +H+ +V+LL R G +++A N + MP
Sbjct: 511 VLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFE 570
Query: 463 PDFVIWGALFCACRTHKDTKIAKIA 487
PD IWG L A R H +T++A+ A
Sbjct: 571 PDAAIWGTLLGASRVHGNTELAETA 595
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 158/318 (49%), Gaps = 29/318 (9%)
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
S V Y+A + +L + +L + +FDE PE++ ++ WNV+I G + L K
Sbjct: 89 SSVSYNAMISGYLRNGEFELARM-----LFDEMPERD----LVSWNVMIKGYVRNRNLGK 139
Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
A ELF MP+++V SW +++ G+ + G + A +F++MPEK VSW A+++ + QN +
Sbjct: 140 ARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKL 199
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TA 336
E+A +F G R N + +VS C G ++ V + ++ +
Sbjct: 200 EEACVLF------GSREN-WALVSW--NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNT 250
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
++ YA+ G I+ A +F E+ D+ TWTAM+ G + E+A + F +M E +
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERN 306
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+ A+L +V++A FD M +V ++ ++ G++ +A N
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPC-----RNVSTWNTMITGYAQCGKISEAKNLF 361
Query: 457 NKMPETPDFVIWGALFCA 474
+KMP+ D V W A+
Sbjct: 362 DKMPKR-DPVSWAAMIAG 378
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 158/340 (46%), Gaps = 22/340 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + + A +FD ++L +NV+I+G N + F M V
Sbjct: 96 MISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV--- 152
Query: 129 RLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
++ + A + R + + K+ V ++A L YVQ K A +F
Sbjct: 153 -CSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNA-----LLSAYVQNSKLEEACVLF 206
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
++ +++ WN L+ G K + +A + F M ++V SW ++I G+ + G++
Sbjct: 207 G----SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEID 262
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +LF++ P V +WTAM++G+ QN E+A +F +M + N+ + + L+
Sbjct: 263 EARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYV 318
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ +E + + + C + + ++ YA+CG I A +F + ++D ++W A
Sbjct: 319 QGERVEMAKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 374
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
MI G + G +A++ F M G + + F + L+ C
Sbjct: 375 MIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTC 414
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 22/295 (7%)
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
K+ + WNV I+ + G +A+ +F MP+ + S+ ++I G++R G+ + A L
Sbjct: 53 KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARML 112
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F++MPE+ +VSW MI G+ +N KA +F +M + V + + LS A+ G +
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV----CSWNTILSGYAQNGCV 168
Query: 313 EAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ RV + + ND AL+ Y + +E A ++FG + L++W ++ G
Sbjct: 169 DDARRVFDRMPEKNDVSW-----NALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGG 223
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIE 430
+ +A Q+F M D + I+T +G++ A FD S D F
Sbjct: 224 FVKKKKIVEARQFFDSMKVR----DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFT- 278
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
T +V+ + V++A ++MPE + V W A+ + ++AK
Sbjct: 279 -----WTAMVSGYIQNRMVEEARELFDRMPERNE-VSWNAMLAGYVQGERVEMAK 327
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 238/491 (48%), Gaps = 37/491 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPK 92
+ +++ N QL+Q+ + + + +LI SL+ S + YA IF+H
Sbjct: 9 VTTILTKINHLNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLSNLHYAHQIFNHIHSP 68
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+++F +I + H + F ML ++RPN YP V KSV L+ L +H
Sbjct: 69 NIYLFTAIITAFSSQQH--TTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVDL---VH 123
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
IVK G V L D Y + LG R A KVFDE E+N ++++ VL++G +
Sbjct: 124 AQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERN----IVVFTVLVSGYLR 179
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+G + K + +F M ++V +W ++I G + G + LF +M G
Sbjct: 180 VGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREM---------VFAAGL 230
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ G + G + N TVV LSAC G L+ G +H Y+ + F +
Sbjct: 231 GEGGFCK------------GNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDS 278
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY- 390
+ ALVDMY KCG++E A VF + K L +W +MI A+HG+ E AI +F+KM+
Sbjct: 279 FVSNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVEC 338
Query: 391 -SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G PD F+ +L AC + G V+ +F+ M +Y IEP + H+ +++LL R GQ
Sbjct: 339 GGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQF 398
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
D+A++ + M PD V+WG+L C+ H T +A+ A + ++ P Y
Sbjct: 399 DEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEID---PHNGGYGTMLA 455
Query: 510 QQKGDGRTWRE 520
G W E
Sbjct: 456 NIYGQLGKWDE 466
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 221/435 (50%), Gaps = 31/435 (7%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S+ A F+H T +NLH +N ++ ++N F + F ML+ + F K
Sbjct: 11 SLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVK 70
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ LSL + H L +K +E D +V L ++Y +LG A KVF+E P KN
Sbjct: 71 ACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS-- 128
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR--------------- 242
++W V+I G ELF M + +++G ++
Sbjct: 129 --VIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFH 186
Query: 243 ------------KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
+G L A LFE + + VV W+A+I GF++NG A ++++MF QML
Sbjct: 187 GLYFSSGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQMLAD 246
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
V N T S + AC+ +G+L+ G VH Y+ N L T+ +DMYAKCG I A
Sbjct: 247 SVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTA 306
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + EK++ +W+ MI G +HG +A+ F +M P+ F+++L+AC +S
Sbjct: 307 YRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHS 366
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G+++ + F SM DY I P +H+ +V+LL R G++D+AL+FIN MP P WGA
Sbjct: 367 GRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGA 426
Query: 471 LFCACRTHKDTKIAK 485
L ACR H+ ++A+
Sbjct: 427 LLGACRIHRRAELAE 441
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 150/347 (43%), Gaps = 27/347 (7%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
S++ A +F+ KN I+ V+I+G S F M R + + +
Sbjct: 112 SLEEAHKVFEEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 171
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDA----------FVRVHLADMYV---------QLG 178
+ ++ G+ H L SG Y+ F + B+ V + G
Sbjct: 172 ACGNVYAGKEGKTFHGLYFSSGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARNG 231
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWV 234
+ + +F + + + + + + ++ CS +G L++ + G M + +V ++
Sbjct: 232 RALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYT 291
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
S ID + + G + A +F Q+PEK V SW+ MINGF +G +AL +F++M
Sbjct: 292 SFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLP 351
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAAS 351
N T VS LSAC+ G +E G +S D+G+ +VD+ + G I EA S
Sbjct: 352 NSVTFVSVLSACSHSGRIEEGWSHFKSMS-RDYGITPVEEHYACMVDLLGRAGKIDEALS 410
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
+ E W A++ IH R E A + KK++ ++ G
Sbjct: 411 FINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGV 457
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 21/263 (7%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
+ +++ G L A + F + + + SW ++ S+N L +F +ML G +
Sbjct: 2 IFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVD 61
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
F +V A+ AC + + H+ + AL+++Y + G++E A VF
Sbjct: 62 SFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFE 121
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-------- 407
E K+ + W MI G + F +M SG E D V ++ AC
Sbjct: 122 EVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKE 181
Query: 408 --------WYSGQVKLALNFFDS--MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ SG V F D F+ V + ++ +R G+ ++++
Sbjct: 182 GKTFHGLYFSSGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFR 241
Query: 458 KM---PETPDFVIWGALFCACRT 477
+M TP+ V + ++ AC +
Sbjct: 242 QMLADSVTPNSVTFASIVLACSS 264
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 233/410 (56%), Gaps = 12/410 (2%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKN 93
SL + + + L+QIHA +I+ +SS +LI S+ + +IDYA +FD +
Sbjct: 18 SLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQVAEPD 77
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ ++N ++RG +++ +S + M ++P++ T+ F+ K+ L ++G +H
Sbjct: 78 IFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRNMGFCIHG 137
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+K G + + FVR L + + G A ++FD++ +++ V+ W+ L G ++ G
Sbjct: 138 KALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRD----VVAWSALTAGYARRG 193
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
L A LF MP K++ +W +I ++++G++ A +LF ++P + VV+W AMI GF
Sbjct: 194 ELCMARRLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVH 253
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGA 332
GE E+AL MF +M+ G + ++ T++S LSAC +G LE G +VH+ I G L
Sbjct: 254 CGENEQALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVL 313
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
+G AL MYAKCG+IE A VF +EKD+ TW ++I GLA+HG E++I F++M +
Sbjct: 314 LGNALTYMYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLN 373
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY----FIEPSVKHHT 437
+P+ F+ +L AC ++G+V+ +FD M Y F+ HH+
Sbjct: 374 NIKPNEITFVGVLVACSHAGKVEEGQRYFDLMTNLYILAGFLRIENSHHS 423
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 63/297 (21%)
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G + A +LF+Q+ E + W M+ G SQ+ KA++++ QM + G++ + FT L
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 304 SACAKV-----------GALEAGVRVHNYI---------SCNDFGL-------------- 329
AC ++ AL+ G + + ++ C D G+
Sbjct: 121 KACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVV 180
Query: 330 -----------KGAIGTA-----------------LVDMYAKCGNIEAASLVFGETKEKD 361
+G + A ++ Y K G + A +F E +D
Sbjct: 181 AWSALTAGYARRGELCMARRLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRD 240
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++TW AMI G G EQA++ F++M+ G +PD L++L+AC G +++
Sbjct: 241 VVTWNAMIAGFVHCGENEQALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHS 300
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
S+ + SV + + ++ G +++AL M E D W ++ H
Sbjct: 301 SILEMSLGDLSVLLGNALTYMYAKCGSIERALEVFRGMREK-DVTTWNSVIVGLALH 356
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 190/327 (58%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A K FDE P KN+ + +N ++ G + + A ELF
Sbjct: 262 DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNE----ISYNAMLAGYVQYKKMVIAGELF 317
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +N++SW ++I G+ + G + +A +LF+ MP++ VSW A+I+G++QNG E+AL
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
MF +M G +N T ALS CA + ALE G +VH + F +G AL+ MY
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYF 437
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+ + A+ VF +EKD+++W MI G A HG QA+ F+ M +G +PD +
Sbjct: 438 KCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVG 497
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC +SG + +F SM DY ++P+ KH+T +++LL R G++++A N + MP
Sbjct: 498 VLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFD 557
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
P WGAL A R H +T++ + A +
Sbjct: 558 PGAASWGALLGASRIHGNTELGEKAAE 584
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 45/325 (13%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+++ G A +VF+ P + S + +N +I+G + A +LF MP++++ SW
Sbjct: 56 HMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSW 111
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++ G++R L +A +LF+ MP+K VVSW AM++G++QNG ++A +F +M
Sbjct: 112 NVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM----PH 167
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN----------------YISCNDFG--------- 328
N + L+A G L+ R+ Y+ N G
Sbjct: 168 RNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 329 -LKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ I ++ YA+ G++ A +F E+ +D+ TWTAM+ G +G ++A +YF
Sbjct: 228 PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M + + A+L ++ +A F++M ++ ++ +
Sbjct: 288 EM----PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC-----RNISSWNTMITGYGQN 338
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
G + +A + MP+ D V W A+
Sbjct: 339 GGIAQARKLFDMMPQR-DCVSWAAI 362
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 48/263 (18%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I+ + I A +FD ++ + +I G A+N H++ ++ FV M R N
Sbjct: 331 MITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSN 390
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
R T+ + A ++ L LG+ +H +VK+G E FV L MY + G T A VF+
Sbjct: 391 RSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFE 450
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------- 232
EK+ V+ WN +I G ++ G+ R+A+ LF M K V
Sbjct: 451 GIEEKD----VVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506
Query: 233 ------------------------WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
+ +ID R G L++A L MP + G SW A+
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566
Query: 268 INGFSQNGE---AEKALAMFFQM 287
+ +G EKA M F+M
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKM 589
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 172/549 (31%), Positives = 266/549 (48%), Gaps = 83/549 (15%)
Query: 9 LTTAIAPTT-NIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
+T++ +P+ + + P I E H ++L+ + +QIH+ II L + +
Sbjct: 4 VTSSPSPSILHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQ 63
Query: 67 TQLISSASLHKSID--YALSIFD---HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
++LI ++ S D YALS+F+ N+ I+N LIRG + +S S + F ML
Sbjct: 64 SKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRML 123
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK-- 179
V+PN T+PF+ KS G+ LH +K + ++ V + MY +G+
Sbjct: 124 YYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMD 183
Query: 180 -------------------------TRG----AFKVFDETPEKNKSESVLLWNVLINGCS 210
++G A ++FDE P K+ V+ WN +I+G
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKD----VVSWNAMISGYV 239
Query: 211 KIGYLRKAVELFGMMPKKNV--------------------------ASWV---------- 234
+ G +A+ F M + NV SWV
Sbjct: 240 QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQ 299
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+LID + + G+ A ELF+ + EK V+SW MI G+S E+ALA+F ML +
Sbjct: 300 LTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN 359
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAA 350
V+ ND T + L ACA +GAL+ G VH YI N A + T+L+DMYAKCG IEAA
Sbjct: 360 VKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAA 419
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
VF ++L +W AM+ G A+HG E+A+ F +M+ G PD F+ +L+AC
Sbjct: 420 ERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQ 479
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V L +F SM DY I P ++H+ +++LL+R + ++A + M PD IWG
Sbjct: 480 AGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWG 539
Query: 470 ALFCACRTH 478
+L AC+ H
Sbjct: 540 SLLSACKAH 548
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/404 (21%), Positives = 157/404 (38%), Gaps = 76/404 (18%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R AI ++ ++ N T ++S + S + + I + + + ++ ++T
Sbjct: 243 RFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTN 302
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI D A +FD K++ +N +I G + S ++ ++ F MLR +V+P
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP 362
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKV 186
N +T+ + + A L L LG+ +H I K+ +A + L DMY + G A +V
Sbjct: 363 NDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERV 422
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
F +N + WN +++G + G+ +A+ LF M K G R D+
Sbjct: 423 FRSMHSRNLAS----WNAMLSGFAMHGHAERALALFSEMVNK----------GLFRPDDI 468
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
T V LSAC
Sbjct: 469 ---------------------------------------------------TFVGVLSAC 477
Query: 307 AKVGALEAGVRVHNYISC--NDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKD 361
+ G ++ G H Y D+G+ + ++D+ A+ E A ++ + E D
Sbjct: 478 TQAGLVDLG---HQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPD 534
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
W +++ HGR E +Y + ++ EP+ +L+
Sbjct: 535 GAIWGSLLSACKAHGRVEFG-EYVAERLFQ-LEPENAGAFVLLS 576
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 244/465 (52%), Gaps = 43/465 (9%)
Query: 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALS 84
N + SL+ + QL+QIHA ++ +L S QL+S A+ + +A
Sbjct: 8 NYRSNTLNSLLKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACL 67
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
IF + + +N+ ++N +IRG + I ++ ML + N T+P + K+ +L
Sbjct: 68 IFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGS 127
Query: 145 LS--LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
S +G +H +V G + D FV L + Y FD
Sbjct: 128 SSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSL---------NFD-------------- 164
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+ A LF +P ++V W ++IDG+ + GD++ A LFE MPE+ +
Sbjct: 165 ------------MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAI 212
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW+A++ +S+ G+ ++ L +F +M +AG N+ +VS L+ACA +GAL G+ VH+Y
Sbjct: 213 SWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYA 272
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+F + TALVDMY+KCG +E+A F KD W AMI G+A++G +++
Sbjct: 273 KQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSL 332
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F KM+ +GT+P T F+A+LTAC ++ VK L F+ M +Y +EP ++H+ +V+L
Sbjct: 333 ELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDL 392
Query: 443 LSRVGQVDKALNFI-NKMP--ETPDFVIWGALFCACRTHKDTKIA 484
++R G + +A FI KM D +WGA+ ACRT+ + ++
Sbjct: 393 MARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVG 437
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 138/424 (32%), Positives = 225/424 (53%), Gaps = 15/424 (3%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++ I A +F+ KN+ +N +I G A+N S + F M +V
Sbjct: 119 TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV- 177
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+++ V +A + R L + E D + + G+ A +
Sbjct: 178 ---VSWNTVMSMLAQCGRIEEARRLFDRMP----ERDVISWTAMIAGLSKNGRIDEARLL 230
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD PE+N V+ WN +I G ++ L +A++LF MP++++ SW ++I G ++ GDL
Sbjct: 231 FDRMPERN----VVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDL 286
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSA 305
++A +LF +MP+K V+SWT MI G Q GE+E+AL +F +ML G + N T VS L A
Sbjct: 287 RRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGA 346
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF--GETKEKDLL 363
C+ + L G +VH IS + + +AL++MY+KCG + A +F G T ++DL+
Sbjct: 347 CSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLV 406
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W +I A HG ++AI +FK+M SG +PD ++ +L+AC ++G V+ L +FD +
Sbjct: 407 SWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDEL 466
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
D I H+ +V+L R G++ +A FI ++ P +WGAL C H + KI
Sbjct: 467 VKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKI 526
Query: 484 AKIA 487
K A
Sbjct: 527 GKQA 530
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 22/286 (7%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-PKKNVASWVSL 236
G+ A ++FDE E + V+ W +I+G K G + +A LF + KKNV +W ++
Sbjct: 66 GRIMEARRLFDEMREPD----VITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAM 121
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ G++R + A +LF +MP K VVSW MI+G++QNG + A+ +F +M + V + +
Sbjct: 122 VGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN 181
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
TV+S L+ C G +E R+ + + D TA++ +K G I+ A L+F
Sbjct: 182 -TVMSMLAQC---GRIEEARRLFDRMPERDV----ISWTAMIAGLSKNGRIDEARLLFDR 233
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
E+++++W AMI G A + R ++A+ F++M E D + ++T +G ++ A
Sbjct: 234 MPERNVVSWNAMITGYAQNLRLDEALDLFERM----PERDLPSWNTMITGLIQNGDLRRA 289
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
F+ M + +V T ++ + G+ ++AL ++M T
Sbjct: 290 RKLFNEM-----PKKNVISWTTMITGCVQEGESEEALKIFSRMLST 330
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 173/408 (42%), Gaps = 73/408 (17%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E D + Y++ G A ++FD K ++V+ W ++ G + + A +
Sbjct: 80 EPDVITWTTVISGYIKCGMIEEARRLFDRVDAK---KNVVTWTAMVGGYIRSNKISDAEK 136
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV------------------ 262
LF MP KNV SW ++IDG+ + G + A LFE+MPE+ VV
Sbjct: 137 LFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEA 196
Query: 263 -------------SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
SWTAMI G S+NG ++A +F +M + V + + ++ A+
Sbjct: 197 RRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQN 252
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
L+ + + + D + T L+ + G++ A +F E +K++++WT MI
Sbjct: 253 LRLDEALDLFERMPERDLPSWNTMITGLI----QNGDLRRARKLFNEMPKKNVISWTTMI 308
Query: 370 WGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
G G E+A++ F +M+ + G +P+ F+++L AC S L + +
Sbjct: 309 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGAC--SNLAGLG----EGQQVHQI 362
Query: 429 IEPSVKHHTV-----VVNLLSRVGQVDKALN-FINKMPETPDFVIWGALFCACRTH---- 478
I +V + ++N+ S+ G++ A F + M D V W + A H
Sbjct: 363 ISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGK 422
Query: 479 --------------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512
K + + L S+CS + + + Y ++ +
Sbjct: 423 EAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDR 470
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 152/309 (49%), Gaps = 31/309 (10%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM-PEKGV 261
N +I SK G + +A LF M + +V +W ++I G+++ G +++A LF+++ +K V
Sbjct: 56 NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 115
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV--- 318
V+WTAM+ G+ ++ + A +F +M + V + + + A+ G +++ + +
Sbjct: 116 VTWTAMVGGYIRSNKISDAEKLFNEMPNKNV----VSWNTMIDGYAQNGRIDSAMYLFEK 171
Query: 319 ---HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
N +S N ++ M A+CG IE A +F E+D+++WTAMI GL+ +
Sbjct: 172 MPERNVVSWN----------TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKN 221
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
GR ++A F +M E + + A++T + ++ AL+ F+ M E +
Sbjct: 222 GRIDEARLLFDRM----PERNVVSWNAMITGYAQNLRLDEALDLFERM-----PERDLPS 272
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
++ L + G + +A N+MP+ + + W + C +++ A S N
Sbjct: 273 WNTMITGLIQNGDLRRARKLFNEMPKK-NVISWTTMITGCVQEGESEEALKIFSRMLSTN 331
Query: 496 LSIPQAMSY 504
+ P ++
Sbjct: 332 GAKPNQGTF 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 173/426 (40%), Gaps = 100/426 (23%)
Query: 25 PSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
P N+ + ++S++ ++ R++ ++ ++ + T +I+ S + ID A
Sbjct: 173 PERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVIS----WTAMIAGLSKNGRIDEAR 228
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD +N+ +N +I G A+N + F M P R P + + L
Sbjct: 229 LLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERM------PER-DLPSWNTMITGL- 280
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+Q G R A K+F+E P+KN V+ W
Sbjct: 281 -------------------------------IQNGDLRRARKLFNEMPKKN----VISWT 305
Query: 204 VLINGCSKIGYLRKAVELFGMM-----PKKNVASWVS----------------------- 235
+I GC + G +A+++F M K N ++VS
Sbjct: 306 TMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISK 365
Query: 236 ------------LIDGFMRKGDLKKAGELFEQ--MPEKGVVSWTAMINGFSQNGEAEKAL 281
LI+ + + G+L A ++F+ ++ +VSW +I ++ +G ++A+
Sbjct: 366 TVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAI 425
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTALVDM 340
F +M +G + +D T V LSAC+ G +E G++ + + ++ LVD+
Sbjct: 426 NFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDL 485
Query: 341 YAKCGNIEAASLVFG-----ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
+ G ++ A FG ETK + W A++ G +H + Q KK++ E
Sbjct: 486 CGRAGRLKEA---FGFIERLETKPSARV-WGALLAGCNVHANVKIGKQAAKKLLEVEPEN 541
Query: 396 DGTVFL 401
GT L
Sbjct: 542 AGTYLL 547
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 240/473 (50%), Gaps = 41/473 (8%)
Query: 56 LHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
LH+ + I++ I SL ++ AL IF+ N+ ++N+++ + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
F M +RPN+ TYP + ++ + LG +H L VK+G E D +V
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385
Query: 170 LADMYVQLGKTRGAFKVFDETPEKN-------------------------KSESVLLW-- 202
L DMY + G A +V + EK+ + + +W
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445
Query: 203 NV----LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
N+ I+GC+ I +R+ +++ + +V+ W +L++ + R G +++A FE
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
++ K ++W +++GF+Q+G E+AL +F +M +GV+ N FT VSALSA A + ++
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G ++H + + +G AL+ +Y KCG+ E A + F E E++ ++W +I +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HGR +A+ F +M G +P+ F+ +L AC + G V+ L++F SM +Y I P
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
H+ V+++ R GQ+D+A FI +MP D ++W L AC+ HK+ ++ + A
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFA 738
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 225/494 (45%), Gaps = 51/494 (10%)
Query: 29 ITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
+ +++S + SS + +L R IHAQ H + + +I+ S A
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F ++ FN LI G A+ H + + F M + P+ +T + + ASL
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G LH + K+G+ D + L D+YV+ G A +F+ + N V+LWN+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN----VVLWNL 315
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS-------------------------------- 232
++ +I L K+ ELF M +
Sbjct: 316 MLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG 375
Query: 233 -----WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+VS LID + + G L+KA + E + EK VVSWT+MI G+ Q+ + ALA F
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M G+ ++ + SA+S CA + A+ G+++H I + + +I ALV++YA+CG
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCG 495
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
I A F E + KD +TW ++ G A G +E+A++ F +M SG + + F++ L+
Sbjct: 496 RIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555
Query: 406 ACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
A ++K ++ + E V + +++L + G + A ++M E +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMSERNE 613
Query: 465 FVIWGALFCACRTH 478
V W + +C H
Sbjct: 614 -VSWNTIITSCSQH 626
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 194/462 (41%), Gaps = 45/462 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+IHA+ + L + LI S + + A +F+ + ++ + ++ G A+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + + M R V P V S L + GR +H K G + FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-------------------- 208
+ +Y++ G R A +VF + P ++ + +N LI+G
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRD----TVTFNTLISGHAQCGHGEHALEIFEEMQFS 238
Query: 209 ---------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKA 249
C+ +G L+K +L + K ++S SL+D +++ GD++ A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F VV W M+ F Q + K+ +F QM AG+R N FT L C
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
++ G ++H+ F + L+DMY+K G +E A V KEKD+++WT+MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G H + A+ FK+M G PD + ++ C ++ L + +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY- 477
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V +VNL +R G++ +A + ++ E D + W L
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEI-EHKDEITWNGL 518
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 12/244 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + G + A +FE++ + VSW AM++G++QNG E+AL ++ QM AGV
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ + S LS+C K G +H + F + +G A++ +Y +CG+ A VF
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ +D +T+ +I G A G E A++ F++M +SG PD ++L AC G ++
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 416 ALN-----FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
F + DY +E S +++L + G V+ AL N T + V+W
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGS------LLDLYVKCGDVETALVIFNSSDRT-NVVLWNL 315
Query: 471 LFCA 474
+ A
Sbjct: 316 MLVA 319
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 181/403 (44%), Gaps = 58/403 (14%)
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H V G+ V L D+Y + G A +VF+E ++ + W +++G +
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDN----VSWVAMLSGYA 119
Query: 211 KIGYLRKAVELF------GMMPKKNVASWV------------------------------ 234
+ G +A+ L+ G++P V S V
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
++I ++R G + A +F MP + V++ +I+G +Q G E AL +F +M +G
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNI 347
+ + T+ S L+ACA +G L+ G ++H+Y+ +D+ ++G +L+D+Y KCG++
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG----SLLDLYVKCGDV 295
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A ++F + +++ W M+ ++ + F +M +G P+ + IL C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ ++ L S+ E + V++++ S+ G ++KA + + E D V
Sbjct: 356 TCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVS 413
Query: 468 WGALFCACRTHKDTKIAKIALQS--SCSL---NLSIPQAMSYC 505
W ++ H+ K A A + C + N+ + A+S C
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 139/313 (44%), Gaps = 26/313 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+NI IS N+ +Q QIHA+I + I L++ + I A S F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K+ +N L+ G A++ + + F+ M + V+ N T+ + A+L+ +
Sbjct: 505 EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++K+G ++ V L +Y + G A F E E+N+ + WN +I
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE----VSWNTII 620
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
CS+ G +A++LF M K+ N +++ ++ G +++ F+ M ++ +
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680
Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ +I+ F + G+ ++A +M + A+ + LSAC +
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEM---PIAADAMVWRTLLSAC----------K 727
Query: 318 VHNYISCNDFGLK 330
VH I +F K
Sbjct: 728 VHKNIEVGEFAAK 740
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALE 313
M +G S + GF + + K L++F G+ DF AL AC G
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRW 58
Query: 314 AGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
V +H G +G L+D+Y+K G + A VF E +D ++W AM+ G
Sbjct: 59 QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A +G E+A+ +++M +G P V ++L++C
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 247/479 (51%), Gaps = 29/479 (6%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDH--FTP 91
SL++ +S +L+Q+ A I L + +TT+LI S+ S ++ +A S+F H
Sbjct: 11 SLLNKLSSMSELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSSILI 70
Query: 92 KNLHIFNVLIRGLAENS--------HFQSCISHFV-------FMLRLSVRPNRLTYPFVS 136
N I N +IR + + + Q I++ V F+L+ R +L S
Sbjct: 71 HNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQESGS 130
Query: 137 KSVASLSLLSL---GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
+L+ + G +HC ++K G + D V+ L Y Q G A +FD+
Sbjct: 131 CDDDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARYLFDQI--- 187
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
K S++ WN++I+ ++ A L +MP K V SW +LI ++R GD++ A +F
Sbjct: 188 -KDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVISWNTLIARYIRLGDVQAARRVF 246
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
MPE+ VSW +MI G + AL +F +M +AGV+ + T++S L ACA+ GALE
Sbjct: 247 GCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALE 306
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G +++ + + ++ +G ALV+MY KCGN+ A +F K K + W AM+ GLA
Sbjct: 307 IGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLA 366
Query: 374 IHGRYEQAIQYFKKMMYS---GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+HG E+ Q F +M S PD F+ +L AC + G V A +FD M Y I
Sbjct: 367 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 426
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P KH+ +V+LL+R G +++A I P V+W L ACRT +T++A+I+ +
Sbjct: 427 PDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 485
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 232/445 (52%), Gaps = 35/445 (7%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVL 100
+ KQ +QIHA I +NL S I++++++ +AS YA ++F H N+ +N +
Sbjct: 36 TMKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSI 95
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
I NS F +S F ML +++RPN T+ + KS +LS L + L +KSG
Sbjct: 96 ITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSL---EQVFTLTMKSGN 152
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
D + + +++ + G A +VFDE+ +N V+ W L++G G + + +
Sbjct: 153 SSDVYFVSSVINVFSKHGAIHLARQVFDESSNRN----VVCWTSLVSGYCSCGLVNEVRD 208
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+F MP++N AS +++ G++R + +LF ++ +K G A
Sbjct: 209 VFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKK-------------DKGRAR-- 253
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
V+ N +VS L+AC +GA E G +H+Y+ N +GTAL+D
Sbjct: 254 -----------VKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDF 302
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG ++ A VF + KD+ TW+AMI GLAI+G + A++ F+KM G +P+ F
Sbjct: 303 YAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTF 362
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +LTAC + + F M Y I PS++H+ +V++L+R GQV KAL FIN M
Sbjct: 363 VGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMH 422
Query: 461 ETPDFVIWGALFCACRTHKDTKIAK 485
PD IWG+L C H ++ +
Sbjct: 423 IEPDGAIWGSLLNGCLMHGHYELGQ 447
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 161/548 (29%), Positives = 280/548 (51%), Gaps = 93/548 (16%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SS 72
PT ++K +H PS + L+ NS Q +QI ++ +NL + ++L+ S+
Sbjct: 24 PTVDLKLNH-PS--------LILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSA 74
Query: 73 ASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S ++++ A+ +F+HFTP NL+IFN +I G ++ + + + ML+ P+R T
Sbjct: 75 VSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNGTYPDRQT 132
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+ ++ ++ ++ + + +HC + G + + ++R L YV G A ++FDE
Sbjct: 133 FLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEM 189
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK---------------- 228
++N V+ +N +I G +K+G + +ELF G+ P
Sbjct: 190 SDRN----VVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGET 245
Query: 229 -----------------NVASWVSLIDGFMRKGDLK------------------------ 247
N+ + +L+D +++ +LK
Sbjct: 246 KLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGY 305
Query: 248 -KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
K GE LF Q+P + +VSW ++I+G++QNG+ +F +M V+ + T+V
Sbjct: 306 AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIV 365
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
+ +SA A++GAL+ G +H ++ G+AL+DMY KCG+IE A ++F + EK
Sbjct: 366 NLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEK 425
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D+ TWT MI G A HG +A++ F +M + T+P+ F+++L AC +SG V L F
Sbjct: 426 DVTTWTTMITGFAFHGFGNKALELF-SVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIF 484
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
SM+ Y IEP V+H+ +V+LL R G++ A+ I KMP P IWGA+ ACR H++
Sbjct: 485 SSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRN 544
Query: 481 TKIAKIAL 488
++A+ AL
Sbjct: 545 MELAERAL 552
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 43/452 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSK 137
ID A+ +FD ++ +N +I GL +N+ ++ FV M+ ++ + T+P V K
Sbjct: 187 IDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRAL--RFVSMMHGKGLKMDEFTFPSVLK 244
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK-S 196
+ L LGR +HC I+KSG E + L DMY A K+FD+ + S
Sbjct: 245 ACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVS 304
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV 234
ES+ LWN +++G G +A+ + M + V AS V
Sbjct: 305 ESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQV 364
Query: 235 S-----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
LID + ++G + A LFE++P+K VV+W+++I G ++ G
Sbjct: 365 HGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSD 424
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+ A ++F M+ G++ + F + L AC+ + + + G +VH+ + +G + TAL
Sbjct: 425 KLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTAL 484
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG+IE A +FG E D ++WT++I G A +GR E+AI KM+ SGT+P+
Sbjct: 485 IDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNK 544
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
L +LTAC +SG V+ A + F+S+ ++ + P +H+ +V++L + G+ ++A+ I+
Sbjct: 545 ITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLIS 604
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+MP PD IW +L AC T+K+ +A I +
Sbjct: 605 EMPFKPDKTIWSSLLGACGTYKNRDLANIVAE 636
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 196/452 (43%), Gaps = 52/452 (11%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S K + +H+ II I +IS S SI A ++FD +N+ + ++
Sbjct: 18 SIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVS 77
Query: 103 GLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
L +S +S + M+ + +PN+ Y V K+ + + LG+ +H I ++ ++
Sbjct: 78 VLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLD 137
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
D + L DMYV K G LR A +
Sbjct: 138 VDIVLMNALLDMYV-----------------------------------KCGSLRDAQRV 162
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F +P KN SW +LI G+ ++G + A +LF++MPE +VSW ++I G N + +AL
Sbjct: 163 FCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNA-SSRAL 221
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
M G++ ++FT S L AC L G +H YI + F +AL+DMY
Sbjct: 222 RFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMY 281
Query: 342 AKCGNIEAASLVFGE-----TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
+ C + A+ +F + + + L W +M+ G ++G Y +A+ M SG D
Sbjct: 282 SSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFD 341
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQVDKA 452
F +L C + LA S + I + VV +++ ++ G ++ A
Sbjct: 342 FYTFSIVLKICMNFDNLSLA-----SQVHGFVITSGYELDCVVGSILIDIYAKQGSINNA 396
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
L ++P+ D V W +L C K+A
Sbjct: 397 LRLFERLPDK-DVVAWSSLITGCARFGSDKLA 427
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 173/404 (42%), Gaps = 81/404 (20%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-----TPKNLHIFNVLIR 102
R+IH II +S + LI S K + A IFD + ++L ++N ++
Sbjct: 256 REIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLS 315
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G N + +S M R VR + T+ V K + LSL +H ++ SG E
Sbjct: 316 GHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYEL 375
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D V L D+Y + G A ++F+ P+K+ V+ W+ LI GC++ G + A LF
Sbjct: 376 DCVVGSILIDIYAKQGSINNALRLFERLPDKD----VVAWSSLITGCARFGSDKLAFSLF 431
Query: 223 ------GMMPKKNVASWV---------------------------------SLIDGFMRK 243
G+ V S V +LID + +
Sbjct: 432 MDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKC 491
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
GD++ A LF + E +SWT++I G +QNG AE+A+++ +M+++G + N T++ L
Sbjct: 492 GDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVL 551
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
+AC G +E V N I N G I
Sbjct: 552 TACRHSGLVEEAWDVFNSIETNH------------------GLIPCPE------------ 581
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ M+ L GR+E+A++ +M + +PD T++ ++L AC
Sbjct: 582 HYNCMVDILGQAGRFEEAVKLISEMPF---KPDKTIWSSLLGAC 622
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 36/203 (17%)
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
A C + +++ +H++I + F I ++ +Y+KC +I A +F E ++
Sbjct: 9 AFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRN 68
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTAC------------- 407
+++WT M+ L +A+ + +M+ S E P+ ++ A+L AC
Sbjct: 69 IVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVH 128
Query: 408 WYSGQVKLALNFF----------------DSMRFDYFIEPSVKHHTVVVNLL---SRVGQ 448
++ Q KL ++ D+ R F E K+ T L+ ++ G
Sbjct: 129 YHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRV--FCEIPCKNATSWNTLILGYAKQGL 186
Query: 449 VDKALNFINKMPETPDFVIWGAL 471
+D A+ +KMPE PD V W ++
Sbjct: 187 IDDAMKLFDKMPE-PDIVSWNSI 208
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 236/484 (48%), Gaps = 40/484 (8%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HAQ+I + + + T L+ + I + +F+ +N +N +I G N
Sbjct: 186 VHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGL 245
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + F+ ML +RPN + VSK++ L + GR ++ + + G++ + V
Sbjct: 246 YAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTA 305
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
L DM+ + G ++ VF + L WN +I+G + G+ +A+ LF M + N
Sbjct: 306 LIDMFAKCGCVTESWSVF--VSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNN 363
Query: 230 VAS----------------------------WVS----------LIDGFMRKGDLKKAGE 251
+ W S L+D + + G+L +
Sbjct: 364 IKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDAMRK 423
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
LF+ E +SWT ++ +SQ+ E E AL++F QM + G + N T L++CA + +
Sbjct: 424 LFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCS 483
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
LE G +VH+ F + + L+DMYAKCG++ A VF K+ D+++WTAMI G
Sbjct: 484 LEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISG 543
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
A HG + A++ F+KM P+ FL +L AC + G V L +F M Y + P
Sbjct: 544 YAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVP 603
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
++H+ VV++L RVG++ +A FI KMP PD +W L ACR H + ++AKIA Q
Sbjct: 604 EIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKV 663
Query: 492 CSLN 495
S N
Sbjct: 664 LSYN 667
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/529 (23%), Positives = 229/529 (43%), Gaps = 74/529 (13%)
Query: 30 TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSR--ITTQLISSASLHKSIDYALS 84
+ET +I LI S + L++ IH +I L S + QL+ + S A
Sbjct: 60 SETSLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQ 119
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD K++ + VL+ G EN ++ I +FV +L + P+ ++ +
Sbjct: 120 VFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDS 179
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ +G +H ++ G FV L MY +LG+ + KVF+ +N+ + WN
Sbjct: 180 IVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQ----VSWNA 235
Query: 205 LINGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKK------------ 248
+I+G G +A + + G + NVA ++S+ + GD++K
Sbjct: 236 MISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIG 295
Query: 249 -------AGELFEQMPEKGVVS------------------WTAMINGFSQNGEAEKALAM 283
L + + G V+ W AMI+GF+ +G E+A+ +
Sbjct: 296 MQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLL 355
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT----ALVD 339
F +M ++ + +T S L++ A + +LE ++H I G+IG AL+D
Sbjct: 356 FLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMI-----WKSGSIGVSLCNALMD 410
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
YAKCG ++A +F +E + ++WT ++ + +E A+ F +M G +P+
Sbjct: 411 AYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVT 470
Query: 400 FLAILTAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
F +L +C GQ +L D +E +V++++ ++ G V A+
Sbjct: 471 FSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVE------SVLIDMYAKCGSVRDAIK 524
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503
+ + PD + W A+ H +AK AL+ + L +P S
Sbjct: 525 VFESLKD-PDVISWTAMISGYAQH---GMAKDALELFRKMELVLPNPNS 569
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 131/274 (47%), Gaps = 3/274 (1%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+ + + D A ++F+++P+K V SWT ++ G ++NG + F ++L + +
Sbjct: 104 LVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPD 163
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
++ + +A+ AC V ++ G VH + F + + T+L+ MYAK G I + VF
Sbjct: 164 EYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFN 223
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ ++ ++W AMI G +G Y +A F +M+ P+ F+++ A G V+
Sbjct: 224 SLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEK 283
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN-FINKMPETPDFVIWGALFCA 474
+ + + F+ ++ ++ T ++++ ++ G V ++ + F++ + W A+
Sbjct: 284 G-RYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISG 342
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508
+ A + C N+ +YC T
Sbjct: 343 FTISGHGEEAMLLFLRMCQNNIK-RDVYTYCSTL 375
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 30/368 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS-----RITTQLISSASLHKSIDY 81
NNI + + + + NS +R + LH + S + L+ + + +D
Sbjct: 362 NNI-KRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDA 420
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
+FD + N + L+ +++S ++ +S F M + +PN++T+ V S AS
Sbjct: 421 MRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCAS 480
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L G+ +H L K+G D V L DMY + G R A KVF E K V+
Sbjct: 481 LCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVF----ESLKDPDVIS 536
Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
W +I+G ++ G + A+ELF M P N A+++ L+ G + + F M
Sbjct: 537 WTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLME 596
Query: 258 EK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E+ G+V + +++ + G +A +M + ++ + L AC G +
Sbjct: 597 ERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKM---PIEPDEKVWSTLLGACRVHGNI 653
Query: 313 E-AGVRVHNYISCN--DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
+ A + +S N DF A L + Y + GNIE V K + + T M
Sbjct: 654 QLAKIAAQKVLSYNPDDF----AALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMS 709
Query: 370 WGLAIHGR 377
W + I G+
Sbjct: 710 W-ICIGGK 716
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 238/477 (49%), Gaps = 49/477 (10%)
Query: 56 LHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
LH+ + I++ I SL ++ AL IF+ N+ ++N+++ + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
F M +RPN+ TYP + ++ + LG +H L VK+G E D +V
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI----------------------- 206
L DMY + G A +V + EK+ V+ W +I
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKD----VVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441
Query: 207 ------------NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAG 250
+GC+ I +R+ +++ + +V+ W +L++ + R G +++A
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
FE++ K ++W +++GF+Q+G E+AL +F +M +GV+ N FT VSALSA A +
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
++ G ++H + + +G AL+ +Y KCG+ E A + F E E++ ++W +I
Sbjct: 562 EIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+ HGR +A+ F +M G +P+ F+ +L AC + G V+ L++F SM +Y I
Sbjct: 622 SCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIR 681
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P H+ V+++ R GQ+D+A FI +MP D ++W L AC+ HK+ ++ + A
Sbjct: 682 PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFA 738
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 225/494 (45%), Gaps = 51/494 (10%)
Query: 29 ITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
+ +++S + SS + +L R IHAQ H + + +I+ S A
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F ++ FN LI G A+ H + + F M + P+ +T + + ASL
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G LH + K+G+ D + L D+YV+ G A +F+ + N V+LWN+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN----VVLWNL 315
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS-------------------------------- 232
++ +I L K+ ELF M +
Sbjct: 316 MLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG 375
Query: 233 -----WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+VS LID + + G L+KA + E + EK VVSWT+MI G+ Q+ + ALA F
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M G+ ++ + SA+S CA + A+ G+++H I + + +I ALV++YA+CG
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCG 495
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
I A F E + KD +TW ++ G A G +E+A++ F +M SG + + F++ L+
Sbjct: 496 RIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555
Query: 406 ACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
A ++K ++ + E V + +++L + G + A ++M E +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMSERNE 613
Query: 465 FVIWGALFCACRTH 478
V W + +C H
Sbjct: 614 -VSWNTIITSCSQH 626
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 194/462 (41%), Gaps = 45/462 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+IHA+ + L + LI S + + A +F+ + ++ + ++ G A+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + + M R V P V S L + GR +H K G + FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-------------------- 208
+ +Y++ G R A +VF + P ++ + +N LI+G
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRD----TVTFNTLISGHAQCGHGEHALEIFEEMQFS 238
Query: 209 ---------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKA 249
C+ +G L+K +L + K ++S SL+D +++ GD++ A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F VV W M+ F Q + K+ +F QM AG+R N FT L C
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
++ G ++H+ F + L+DMY+K G +E A V KEKD+++WT+MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G H + A+ FK+M G PD + ++ C ++ L + +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY- 477
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V +VNL +R G++ +A + ++ E D + W L
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEI-EHKDEITWNGL 518
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 12/244 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + G + A +FE++ + VSW AM++G++QNG E+AL ++ QM AGV
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ + S LS+C K G +H + F + +G A++ +Y +CG+ A VF
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ +D +T+ +I G A G E A++ F++M +SG PD ++L AC G ++
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 416 ALN-----FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
F + DY +E S +++L + G V+ AL N T + V+W
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGS------LLDLYVKCGDVETALVIFNSSDRT-NVVLWNL 315
Query: 471 LFCA 474
+ A
Sbjct: 316 MLVA 319
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 181/403 (44%), Gaps = 58/403 (14%)
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H V G+ V L D+Y + G A +VF+E ++ + W +++G +
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDN----VSWVAMLSGYA 119
Query: 211 KIGYLRKAVELF------GMMPKKNVASWV------------------------------ 234
+ G +A+ L+ G++P V S V
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
++I ++R G + A +F MP + V++ +I+G +Q G E AL +F +M +G
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNI 347
+ + T+ S L+ACA +G L+ G ++H+Y+ +D+ ++G +L+D+Y KCG++
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG----SLLDLYVKCGDV 295
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A ++F + +++ W M+ ++ + F +M +G P+ + IL C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ ++ L S+ E + V++++ S+ G ++KA + + E D V
Sbjct: 356 TCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVS 413
Query: 468 WGALFCACRTHKDTKIAKIALQS--SCSL---NLSIPQAMSYC 505
W ++ H+ K A A + C + N+ + A+S C
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 139/313 (44%), Gaps = 26/313 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+NI IS N+ +Q QIHA+I + I L++ + I A S F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K+ +N L+ G A++ + + F+ M + V+ N T+ + A+L+ +
Sbjct: 505 EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++K+G ++ V L +Y + G A F E E+N+ + WN +I
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE----VSWNTII 620
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
CS+ G +A++LF M K+ N +++ ++ G +++ F+ M ++ +
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680
Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ +I+ F + G+ ++A +M + A+ + LSAC +
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEM---PIAADAMVWRTLLSAC----------K 727
Query: 318 VHNYISCNDFGLK 330
VH I +F K
Sbjct: 728 VHKNIEVGEFAAK 740
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALE 313
M +G S + GF + + K L++F G+ DF AL AC G
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRW 58
Query: 314 AGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
V +H G +G L+D+Y+K G + A VF E +D ++W AM+ G
Sbjct: 59 QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A +G E+A+ +++M +G P V ++L++C
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 240/482 (49%), Gaps = 56/482 (11%)
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
+F +++ +N LI LA + F +M +L ++PNR T+P KS ++L L+
Sbjct: 41 YFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNS 100
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G+ H + G E D FV L DMY + GK A +FDE P +N ++ W LI
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRN----IVTWTSLIT 156
Query: 208 G--------------------------------------------CSKIGYLRKAVELFG 223
G CS++ + + G
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216
Query: 224 MMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ K K + +L+D + + G++ + ++F+ M EK VVSW +MI ++QNG +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276
Query: 280 ALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
A +F ML AG + N+ T+ + L ACA GAL G+ +H+ + + + T+++
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMY KCG E A F KEK++ +WTAMI G +HG +A+ F +M+++G +P+
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+++L AC ++G ++ +F++M +Y +EP V+H+ +V+LL R G + +A N I
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTW 518
M DFV+WG+L ACR HKD ++A+I+ + L+ P Y D W
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLD---PSNCGYYVLLANIYADAGRW 513
Query: 519 RE 520
++
Sbjct: 514 KD 515
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 169/386 (43%), Gaps = 57/386 (14%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q H Q ++ + +++ LI S + A +FD +N+ + LI G +N
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQN 161
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---------LGRGLHCLIVKS 158
+ F L N SVA +S+LS + G+H + +K
Sbjct: 162 DDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKV 221
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NG----- 208
G++ V L D Y + G+ + KVFD+ EK+ V+ WN +I NG
Sbjct: 222 GLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKD----VVSWNSMIAVYAQNGLSTDA 277
Query: 209 --------------------------CSKIGYLRKAVELFGMMPK----KNVASWVSLID 238
C+ G LR + L + K NV S+ID
Sbjct: 278 FEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIID 337
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G + A F+ M EK V SWTAMI G+ +G A +AL +F+QM+ AGV+ N T
Sbjct: 338 MYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYIT 397
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFG 355
+S L+AC+ G LE G R N +S +++ ++ + +VD+ + G I EA +L+
Sbjct: 398 FISVLAACSHAGFLEEGWRWFNAMS-HEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQA 381
+D + W +++ IH E A
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELA 482
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 247/479 (51%), Gaps = 39/479 (8%)
Query: 48 RQIHAQIILHNLFASSRITTQL---ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
RQ H+ +L LF+S+R I + S +D A +FD K++ +N ++
Sbjct: 11 RQRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAY 70
Query: 105 AENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+N Q + F M LR V N + ++ V + +L R L K+ Y+
Sbjct: 71 WQNGLLQRSKALFHSMPLRNVVSWNSI----IAACVQNDNLQDAFRYLAAAPEKNAASYN 126
Query: 164 AFVR--------------------------VHLADMYVQL-GKTRGAFKVFDETPEKNKS 196
A + + D Y ++ G A +F+ P +N
Sbjct: 127 AIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNS- 185
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+ W V+ING + G +A E+F MP+KN + ++I GF ++G ++ A +LF+++
Sbjct: 186 ---VSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEI 242
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
+ +VSW ++ G++QNG E+AL +F QM+ G++ +D T VS ACA + +LE G
Sbjct: 243 RCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGS 302
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ H + + F ++ AL+ +++KCG I + LVFG+ DL++W +I A HG
Sbjct: 303 KAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHG 362
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
Y++A YF +M+ +PDG FL++L+AC +G+V ++N F M +Y I P +H+
Sbjct: 363 LYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHY 422
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+++SR GQ+ +A IN+MP D IWGA+ AC H + ++ ++A + +L+
Sbjct: 423 ACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLD 481
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 113/254 (44%), Gaps = 12/254 (4%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I++ +P +++T + S S ++ + HA +I H + + LI+ S
Sbjct: 274 IRTGMQP-DDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGG 332
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I + +F + +L +N +I A++ + S+F M+ +SV+P+ +T+ + +
Sbjct: 333 IVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSA 392
Query: 139 VASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ L L+V + G+ + L D+ + G+ + A K+ +E P K S
Sbjct: 393 CCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSS 452
Query: 198 SVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+W ++ CS ++G L A + + P N ++V L + + G K +
Sbjct: 453 ---IWGAVLAACSVHLNVELGEL-AARRILNLDP-FNSGAYVMLSNIYAAAGKWKDVHRI 507
Query: 253 FEQMPEKGVVSWTA 266
M E+GV TA
Sbjct: 508 RVLMKEQGVKKQTA 521
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 194/331 (58%), Gaps = 3/331 (0%)
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ + D + + G A + F+E P + K+ V+ W V+I+G + G + A LF MP+
Sbjct: 58 IEMIDGFARSGDMVAARRTFNEVPFELKN--VVTWTVMIDGYASKGEMEAARLLFEDMPQ 115
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+N W S+I G+ + G++K+A +F+++P + +V+W ++I G+SQNG E+AL F +M
Sbjct: 116 RNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKM 175
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ G ++ TVV LSACA++ L+ G VH I L + ALVDMYAKCG++
Sbjct: 176 QNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDL 235
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A L+F K+ W +MI G A+HG+ ++A+++F +M S +PD FL++L+AC
Sbjct: 236 TGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSAC 295
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G V++ L F M Y + S+KH+ +V+LL R G++ A + I MP P+ +
Sbjct: 296 VHGGFVEVGLEIFSKME-RYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTV 354
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
WGA ACR H D + + ++ C+ + S+
Sbjct: 355 WGAFLGACRIHMDNDMVEQVVEDVCTSDSSV 385
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 45/237 (18%)
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
MY + G + K+F+ PE+N V+ WN +I+G K G ++ A LF M +N S
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERN----VVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVS 56
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
W+ +IDGF R GD+ A F ++P K VV+WT MI+G++ GE E A +F M
Sbjct: 57 WIEMIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQ- 115
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
N+ + ++++ Y K GN++ A
Sbjct: 116 ----------------------------RNFF----------VWSSMISGYCKIGNVKEA 137
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+F ++L+ W ++I G + +G E+A+ F KM G EPD + +L+AC
Sbjct: 138 RAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSAC 194
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 19/288 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T +I S + R + + N F + + +IS ++ A +IF
Sbjct: 86 NVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFF----VWSSMISGYCKIGNVKEARAIF 141
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +NL +N LI G ++N + + F M P+ +T V + A LSLL
Sbjct: 142 DRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLD 201
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G+ +H +I G++ + FV L DMY + G GA +F+ KN + WN +I
Sbjct: 202 VGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNA----CWNSMI 257
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+G + G ++A+E FG M + N +++S++ + G ++ E+F +M G+
Sbjct: 258 SGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLS 317
Query: 263 S----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ + +++ + G + A + M ++ ND + L AC
Sbjct: 318 ASIKHYGCLVDLLGRAGRIQDAYHLIKSM---PMKPNDTVWGAFLGAC 362
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 227/464 (48%), Gaps = 60/464 (12%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
D AL +F ++L +N LI GL+ F + F +LR VR
Sbjct: 65 DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124
Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
L VS +V LL GR + + D + Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
Q G+ A +FDE P++N V+ W +I+G ++ G + A +LF +MP++N SW
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240
Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
+++ G+++ G ++ A ELF MPE +G+V +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W+AMI + QN +AL+ F +ML GVR N +V+S L+ CA + L+ G VH +
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F + +AL+ MY KCGN++ A VF + KD++ W +MI G A HG EQA+
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M +G PDG ++ LTAC Y+G+VK F+SM + I P +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G V++A + I MP PD VIWGAL ACR H++ +IA+ A
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFA 524
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 19/263 (7%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N I ++ G + A F MP + AS+ +L+ G+ R A LF +MP + +
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ A+I+G S + A + FT S L + G L +R+ +
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + L+D G + A +F E ++D++ WTAM+ G GR +A
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194
Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
F +M P V + A+++ +G+V LA F+ M E + T ++
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAML 243
Query: 441 NLLSRVGQVDKALNFINKMPETP 463
+ G V+ A N MPE P
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHP 266
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 17/220 (7%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A ++F+ ++ ++ +I+ +N +S F ML VRPN + +
Sbjct: 283 VDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A+L++L GR +H +++ + D F L MY++ G A +VF K+
Sbjct: 343 CAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD---- 398
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+++WN +I G ++ G +A+ +F GM P + +++ + G +K+ E+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP--DGITYIGALTACSYTGKVKEGREI 456
Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
F M G ++ M++ ++G E+A + M
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM 496
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 236/476 (49%), Gaps = 49/476 (10%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNST-KQLRQIHAQIILHNL----FASSRITTQLISSA 73
+ SS S + ++L+H+ +T +LRQ+H ++ L A+SR+ L A
Sbjct: 23 LPSSPSISAFLASHPALTLLHTQCATMARLRQLHGALVKSGLAKDPIAASRVVAFL---A 79
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
+ + YA + H N ++N IR L++ + ++ F+ MLR P R T+P
Sbjct: 80 GKGRDVAYAARLVRHHPRPNAFMWNTAIRALSDGPGPDAAVALFLDMLRSPTPPERRTFP 139
Query: 134 FVSKSVASLSLLS----LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
+ S A L + + G LH +++K G+ DA+VR + MY G+
Sbjct: 140 SLFASYARLGVRADDDGAGAALHGMVLKLGLAGDAYVRNSMIAMYASWGRA--------- 190
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
E++LL+ + + F +V + S I R G + +A
Sbjct: 191 ------DEALLLYG-------------QCGQAF------DVVACNSAIVALTRAGRVDEA 225
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
E+F+ MP + V +W+AM++ +S+ + A+ +F M +GV N +VS L CA +
Sbjct: 226 REVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGCCAAL 285
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWT 366
GALE G VH YI + + + TALVDMY KCG+I A VF ++ + L +W
Sbjct: 286 GALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDASRSQGLAKLSSWN 345
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AM+ GLA+HG+ ++A+ F ++ G PD F+ IL A +SG A F +M +
Sbjct: 346 AMMLGLAVHGQCQEALALFSELETYGLSPDNVTFITILMAYGHSGMADEAKALFSAMERE 405
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
Y + P ++H+ +V+ L+R G++ +A + I MP PD IWGAL CR H D +
Sbjct: 406 YAVTPGIEHYGCLVDALARAGRLGEAEDVIRTMPMRPDTAIWGALLSGCRLHGDAE 461
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 111/290 (38%), Gaps = 53/290 (18%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD + + ++ ++ + + Q + F M V PN V
Sbjct: 222 VDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGC 281
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A+L L G +H I K GV +A V L DMY + G A VFD + + ++
Sbjct: 282 CAALGALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDASRSQGLAK- 340
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPK------------------------- 227
+ WN ++ G + G ++A+ LF G+ P
Sbjct: 341 LSSWNAMMLGLAVHGQCQEALALFSELETYGLSPDNVTFITILMAYGHSGMADEAKALFS 400
Query: 228 ---------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-WTAMINGFSQNGEA 277
+ + L+D R G L +A ++ MP + + W A+++G +G+A
Sbjct: 401 AMEREYAVTPGIEHYGCLVDALARAGRLGEAEDVIRTMPMRPDTAIWGALLSGCRLHGDA 460
Query: 278 EKAL-----AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
E AM D+G V A S A+ G + AGV V +
Sbjct: 461 EAGARAASGAMECDPQDSG------AYVLAASVLARDGEVGAGVSVRERM 504
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 230/462 (49%), Gaps = 48/462 (10%)
Query: 37 LIHSSNSTKQLRQIHAQII----LHNLFASSRITTQL-ISSASLHKSIDYALSIFDHFTP 91
LI + ++L++ H QI+ LH IT L + S S + S YA ++F
Sbjct: 24 LIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKN 83
Query: 92 KNLHIFNVLIRGL-----AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+L +N++IR +++HF + + M + PN LT+PF+ K +
Sbjct: 84 PDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGA 143
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++K G D +V L +Y+ G A KVFDE
Sbjct: 144 TGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDE----------------- 186
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
M +V +W S++ G +R G L A +LF +M + +++W +
Sbjct: 187 ------------------MLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNS 228
Query: 267 MINGFSQNGEAEKALAMFFQML---DAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
+I G +Q G A+++L +F +M D V+ + T+ S LSACA++GA++ G VH Y+
Sbjct: 229 IITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLR 288
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N IGTALV+MY KCG+++ A +F E EKD WT MI A+HG +A
Sbjct: 289 RNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFN 348
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M +G +P+ F+ +L+AC +SG V+ FD M+ Y IEP V H+ +V++L
Sbjct: 349 CFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDIL 408
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
SR D++ I MP PD +WGAL C+ H + ++ +
Sbjct: 409 SRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGE 450
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 153/342 (44%), Gaps = 26/342 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ISL + R++ ++++ ++ + + + + L D A+ +F +N
Sbjct: 167 LISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGL----DMAMDLFRKMNGRN 222
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
+ +N +I GLA+ + + F M LS V+P+++T V + A L + G+
Sbjct: 223 IITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKW 282
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H + ++G+E D + L +MY + G + AF++F+E PEK+ S W V+I+ +
Sbjct: 283 VHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASA----WTVMISVFA 338
Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
G KA F M K V ++V L+ G +++ F+ M E V
Sbjct: 339 LHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQV 398
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR-VHN 320
+ M++ S+ +++ + M ++ + + + L C G +E G + VH+
Sbjct: 399 YHYACMVDILSRARLFDESEILIRSM---PMKPDVYVWGALLGGCQMHGNVELGEKVVHH 455
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
I A D+YAK G +AA + KEK +
Sbjct: 456 LIDLEPH--NHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRI 495
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 14/263 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + IT ++S + + +H + + + I T L++ + A
Sbjct: 258 KP-DKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAF 316
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF+ K+ + V+I A + + F+ M + V+PN +T+ + + A
Sbjct: 317 EIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSG 376
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS----ESV 199
L+ GR C V V H A M L + R +FDE+ +S V
Sbjct: 377 LVEQGR--WCFDVMKRVYSIEPQVYHYACMVDILSRAR----LFDESEILIRSMPMKPDV 430
Query: 200 LLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W L+ GC G + K V + N A +V+ D + + G A + M
Sbjct: 431 YVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIM 490
Query: 257 PEKGVVSWTAMINGFSQNGEAEK 279
EK + + NGE ++
Sbjct: 491 KEKRIEKKIPGCSMIEINGEVQE 513
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 207/400 (51%), Gaps = 41/400 (10%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+L+QI A + + + T QLI S SI YA +FD + ++N LI+ +
Sbjct: 3 RLKQIQAYTLRNGI----EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYS 58
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ C S + M PN ++ F+ + ASLS GR LH VKSG D F
Sbjct: 59 SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVF 118
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
L DMY +K+G L A + F M
Sbjct: 119 ALTALVDMY-----------------------------------AKLGLLSLARKQFDEM 143
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
++V +W S+I G+ R GDL+ A ELF MP + V SWTAMI+G++QNG+ KAL+MF
Sbjct: 144 TVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFL 203
Query: 286 QMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M + +R N+ T+ S L ACA +GALE G R+ Y N + + AL++MYA+C
Sbjct: 204 MMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARC 263
Query: 345 GNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G I+ A VF E ++L +W +MI GLA+HGR ++AI+ F KM+ G PD F+ +
Sbjct: 264 GRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
L AC + G V +FF+SM D+ I P ++H+ +V+LL
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLL 363
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 124/281 (44%), Gaps = 14/281 (4%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-- 262
LI +I + A +LF +PK V + LI + G + L+ QM +G
Sbjct: 22 LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPN 81
Query: 263 --SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
S+T + + + ++ + + +G + F + + + AK+G L + +
Sbjct: 82 EHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFD 141
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
++ D +++ YA+CG++E A +F +++ +WTAMI G A +G+Y +
Sbjct: 142 EMTVRDV----PTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAK 197
Query: 381 AIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFFDSMRFD-YFIEPSVKHHT 437
A+ F MM TE P+ ++L AC G +++ R + YF V +
Sbjct: 198 ALSMF-LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSN-- 254
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
++ + +R G++DKA ++ + W ++ H
Sbjct: 255 ALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVH 295
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 7/349 (2%)
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
S++ A+ +S G LHC ++K G D +VR L MY + G+ A K FDE P+KN
Sbjct: 105 SRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKN- 163
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ WN L+ A + MP +N++ W + I +R G + +A +F +
Sbjct: 164 ---AVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSE 220
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ VSW ++I+G+++ G+ +AL +F +M + G++ + T+V L ACAK+G L+ G
Sbjct: 221 MPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLG 280
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H + G +G AL+DMYAKCG ++ A VF +D+ W AMI G ++H
Sbjct: 281 TNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVH 340
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G +A++ F M EP+ FL +LTAC + G V +F+SM DY I P VKH
Sbjct: 341 GCSREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKH 397
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ ++++L R G++++A I + P T V+W L ACR H +A
Sbjct: 398 YGCMIDMLCRYGKIEEAYLMIKENPSTASSVLWKMLLAACRVHGHIDLA 446
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 44/270 (16%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E DA L Y +LGK A +F E E + L +++ C+KIG L
Sbjct: 223 ERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTN 282
Query: 221 LFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ + K + + +LID + + G L A ++F++M + + W AMI GFS +G
Sbjct: 283 IHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGC 342
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-- 334
+ +AL +F M + N T + L+AC+ G + G + N + D+ + +
Sbjct: 343 SREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSM-IEDYRIVPDVKHY 398
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
++DM + G IE A L+ E T ++++W +
Sbjct: 399 GCMIDMLCRYGKIEEAYLMIKENPS----TASSVLWKM---------------------- 432
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMR 424
+L AC G + LA FF +R
Sbjct: 433 --------LLAACRVHGHIDLAYMFFHELR 454
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 23/250 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A IF ++ +N LI G + + + F M ++P LT V +
Sbjct: 211 MDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGA 270
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + L LG +H + G+ D V L DMY + G A KVFD ++
Sbjct: 271 CAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRD---- 326
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ WN +I G S G R+A+ELF M + N +++ ++ G + + + F M
Sbjct: 327 ITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMI 386
Query: 258 EK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E V + MI+ + G+ E+A M ++ N T S L L
Sbjct: 387 EDYRIVPDVKHYGCMIDMLCRYGKIEEAYLM--------IKENPSTASSVLWK-----ML 433
Query: 313 EAGVRVHNYI 322
A RVH +I
Sbjct: 434 LAACRVHGHI 443
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH + + A + LI + +D A +FD + +++ +N +I G + +
Sbjct: 282 NIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHG 341
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVR 167
+ + F M + PN +T+ V + + L++ GR + +I + D
Sbjct: 342 CSREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHY 398
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ DM + GK A+ + E P + S +LW +L+ C G++ A F
Sbjct: 399 GCMIDMLCRYGKIEEAYLMIKENPS---TASSVLWKMLLAACRVHGHIDLAYMFF 450
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 74/471 (15%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
NVLIR LA F ++ + + + + TYPFV ++V L L GR H +K
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
+G +DA+ L +MY LG+ A KVFDE P S +++LWN+++ + G
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMP----SRALVLWNMMVRCYIRCGRYSA 133
Query: 218 AV------ELFGMMPKK--------------------------------NVASWVSLIDG 239
AV E G+ P + N+ +L+D
Sbjct: 134 AVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDM 193
Query: 240 FMRKGDLKKAGELFEQMPEKGVVS-------------------------------WTAMI 268
+ + L++A +LFEQMP + ++S WTAMI
Sbjct: 194 YTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMI 253
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
N Q+G E+AL +F M V + FTVV+ L+ CA +GAL+ G +H Y
Sbjct: 254 NACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMK 313
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +GTAL+DMY+KCG+IE + VF + +D WTA+I GLA +G+ +A++ F+ M
Sbjct: 314 IDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDM 373
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
S +PDG F+ +L+AC + G V F +MR Y IEP V+H++ +VNLL R G
Sbjct: 374 QRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGL 433
Query: 449 VDKALNFINKMPETPDFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498
+D+A I +P D + ++GAL AC+ H + ++++ + C + I
Sbjct: 434 LDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQI 484
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 23/273 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+S L +D A +F+ K+L ++ +I ++ F+ ++ F M V
Sbjct: 219 TILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVE 278
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+R T + A+L L G +H + ++ DA + L DMY + G + +V
Sbjct: 279 PDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEV 338
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMR 242
F ++ + W +I G + G +A+ELF M + V +++ ++
Sbjct: 339 FWRMQGRDATA----WTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCH 394
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRA 294
G + + + F M E V ++ ++N + G EAE+ + D +
Sbjct: 395 GGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIG------DVPINK 448
Query: 295 NDFTVVSA-LSACAKVGALEAGVRVHNYISCND 326
+ + A L+AC G +E R+ I D
Sbjct: 449 DAMPLFGALLTACKAHGNVEMSERLTKRICEQD 481
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 227/464 (48%), Gaps = 60/464 (12%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
D AL +F ++L +N LI GL+ F + F +LR VR
Sbjct: 65 DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124
Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
L VS +V LL GR + + D + Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
Q G+ A +FDE P++N V+ W +I+G ++ G + A +LF +MP++N SW
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240
Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
+++ G+++ G ++ A ELF MPE +G+V +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W+AMI + QN +AL+ F +ML GVR N +V+S L+ CA + L+ G VH +
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F + +AL+ MY KCGN++ A VF + KD++ W +MI G A HG EQA+
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F M +G PDG ++ LTAC Y+G+VK F+SM + I P +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G V++A + I MP PD VIWGAL ACR H++ +IA+ A
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFA 524
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 19/263 (7%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N I ++ G + A F MP + AS+ +L+ G+ R A LF +MP + +
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S+ A+I+G S + A + FT S L + G L +R+ +
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + L+D G + A +F E ++D++ WTAM+ G GR +A
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194
Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
F +M P V + A+++ +G+V LA F+ M E + T ++
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAML 243
Query: 441 NLLSRVGQVDKALNFINKMPETP 463
+ G V+ A N MPE P
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHP 266
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 17/220 (7%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A ++F+ ++ ++ +I+ +N +S F ML VRPN + +
Sbjct: 283 VDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A+L++L GR +H +++ + D F L MY++ G A +VF K+
Sbjct: 343 CAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD---- 398
Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+++WN +I G ++ G +A+ +F GM P + +++ + G +K+ E+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP--DGITYIGALTACSYTGKVKEGREI 456
Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
F M G ++ M++ ++G E+A + M
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM 496
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 7/349 (2%)
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
S++ A+ +S G LHC ++K G D +VR L MY + G+ A K FDE P+KN
Sbjct: 119 SRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKN- 177
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ WN L+ A + MP +N++ W + I +R G + +A +F +
Sbjct: 178 ---AVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSE 234
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ VSW ++I+G+++ G+ +AL +F +M + G++ + T+V L ACAK+G L+ G
Sbjct: 235 MPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLG 294
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H + G +G AL+DMYAKCG ++ A VF +D+ W AMI G ++H
Sbjct: 295 TNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVH 354
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G +A++ F M EP+ FL +LTAC + G V +F+SM DY I P VKH
Sbjct: 355 GCSREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKH 411
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ ++++L R G++++A I + P T V+W L ACR H +A
Sbjct: 412 YGCMIDMLCRYGKIEEAYLMIKENPSTASSVLWKMLLAACRVHGHIDLA 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 44/270 (16%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E DA L Y +LGK A +F E E + L +++ C+KIG L
Sbjct: 237 ERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTN 296
Query: 221 LFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ + K + + +LID + + G L A ++F++M + + W AMI GFS +G
Sbjct: 297 IHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGC 356
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-- 334
+ +AL +F M + N T + L+AC+ G + G + N + D+ + +
Sbjct: 357 SREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSM-IEDYRIVPDVKHY 412
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
++DM + G IE A L+ E T ++++W +
Sbjct: 413 GCMIDMLCRYGKIEEAYLMIKENPS----TASSVLWKM---------------------- 446
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMR 424
+L AC G + LA FF +R
Sbjct: 447 --------LLAACRVHGHIDLAYMFFHELR 468
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 23/250 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A IF ++ +N LI G + + + F M ++P LT V +
Sbjct: 225 MDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGA 284
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + L LG +H + G+ D V L DMY + G A KVFD ++
Sbjct: 285 CAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRD---- 340
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ WN +I G S G R+A+ELF M + N +++ ++ G + + + F M
Sbjct: 341 ITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMI 400
Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E V + MI+ + G+ E+A M ++ N T S L L
Sbjct: 401 EDYRIVPDVKHYGCMIDMLCRYGKIEEAYLM--------IKENPSTASSVLWK-----ML 447
Query: 313 EAGVRVHNYI 322
A RVH +I
Sbjct: 448 LAACRVHGHI 457
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH + + A + LI + +D A +FD + +++ +N +I G + +
Sbjct: 296 NIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHG 355
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVR 167
+ + F M + PN +T+ V + + L++ GR + +I + D
Sbjct: 356 CSREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHY 412
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ DM + GK A+ + E P + S +LW +L+ C G++ A F
Sbjct: 413 GCMIDMLCRYGKIEEAYLMIKENPS---TASSVLWKMLLAACRVHGHIDLAYMFF 464
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/428 (32%), Positives = 221/428 (51%), Gaps = 47/428 (10%)
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
+RI L++S L +S + + + LIR A + Q+ + + ++R
Sbjct: 37 ARIQAALVTSGLLRRSAE---------------LHDALIRAHASSGRPQAALPLYAHLIR 81
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
+ P T P + KS+A + R L + + VR+ LA
Sbjct: 82 AGLFPTPHTLPSLLKSLALSPAVPGARRLALAV------HAHAVRLGLAGF--------- 126
Query: 183 AFKVFDETPEKNKSESVLLWNVLIN-GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
+L+ N LI +G L A L + +++ +LI
Sbjct: 127 ----------------LLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHA 170
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R G + A LF++MPE+ VSW+AM+NG+ Q G+ +AL +F QM GVR +D +V
Sbjct: 171 RAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVG 230
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
L+ACA++GALE G VH Y+ N+ + +GTALVDMYAKCG ++ VF K+K+
Sbjct: 231 VLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKN 290
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+L WT MI GLA+HGR ++ F +M SG +PD F+ L AC ++G V F+
Sbjct: 291 VLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFN 350
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM +Y I+P ++H+ +V+LL+R G + +A + + KMP PD +IWGAL CR HK+
Sbjct: 351 SMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNV 410
Query: 482 KIAKIALQ 489
++A+ ++
Sbjct: 411 ELAEYVIK 418
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
+ +Q + +H + +N+ + + T L+ + + + +F+ KN+ + +I
Sbjct: 239 GALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMI 298
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGV 160
+GLA + ++ F M V+P+ + + + L+ GR L + ++ G+
Sbjct: 299 KGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGI 358
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ + D+ + G A + ++ P K + L+W L+ GC K VE
Sbjct: 359 KPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDA---LIWGALMAGCR----FHKNVE 411
Query: 221 L--------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
L + P K+ ++V L + + G A E+ M EKGV
Sbjct: 412 LAEYVIKHWIELEPDKS-GAYVLLGNIYSASGRHASAREIRNLMREKGV 459
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 228/445 (51%), Gaps = 43/445 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + ++RG + + F M R +V +++ + +
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLK 157
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
S + + L +I E D V ++ Y Q+G+ A ++FDE +N V
Sbjct: 158 ESRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRN----VFT 209
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
W +++G +K G + A +LF +MP++N SW +++ G+ + G +K+A ELFE MP K +
Sbjct: 210 WTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWI 269
Query: 262 V-------------------------------SWTAMINGFSQNGEAEKALAMFFQMLDA 290
V +W AMI F + G +AL +F +M
Sbjct: 270 VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQRE 329
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
GV N +++S LS CA + +L+ G +VH + ++F + + L+ MY KCG++ A
Sbjct: 330 GVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRA 389
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F KD++ W +MI G + HG E+A+ F M SG +PD F+ +L+AC YS
Sbjct: 390 KGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYS 449
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G+VK F++M+ Y +EP ++H+ +V+LL R G+VD+A+ + KMP PD ++WGA
Sbjct: 450 GKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGA 509
Query: 471 LFCACRTHKDTKIAKIALQSSCSLN 495
L ACR H +A++A++ L
Sbjct: 510 LLGACRNHMKLDLAEVAVEKLAKLE 534
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 14/256 (5%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y ++G A KVFD TP ++ + WN +++ + R A+ LF MP++N S+
Sbjct: 29 YGRIGDIHNARKVFDNTPLPQRT--IASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSF 86
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+I G+++ G + A ++F+ MPE+ VVSWT+M+ G+ Q G E+A +F++M R
Sbjct: 87 NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----PR 142
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N + + K ++ ++ + I D + T ++ Y + G ++ A +
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVTNMIGGYCQVGRLDEAREL 198
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E K +++ TWT M+ G A +GR + A + F+ M E + + A+L SG++
Sbjct: 199 FDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM----PERNEVSWTAMLMGYTQSGRM 254
Query: 414 KLALNFFDSMRFDYFI 429
K A F++M + +
Sbjct: 255 KEAFELFEAMPVKWIV 270
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 178/432 (41%), Gaps = 82/432 (18%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
HK D AL +FD +N FN +I G +N F V P R
Sbjct: 66 HKPRD-ALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVF------DVMPER------ 112
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG------KTRGAFKVFDE 189
+V S + + G ++ ++ + R ++ V +G + A K+FD
Sbjct: 113 --NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDM 170
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
PEK+ V++ +I G ++G L +A ELF M +NV +W +++ G+ + G + A
Sbjct: 171 IPEKD----VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVA 226
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+LFE MPE+ VSWTAM+ G++Q+G ++A +F M
Sbjct: 227 RKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM---------------------- 264
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
V ++CN+ L+ + G + A ++F KE+D TW AMI
Sbjct: 265 -------PVKWIVACNEMILQ----------FGLAGEMHRARMMFEGMKERDEGTWNAMI 307
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW------YSGQV--KLALNFFD 421
G +A+ F +M G + +++L+ C + QV +L + FD
Sbjct: 308 KVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD 367
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
D ++ +V++ + + G + +A N+ D V+W ++ H
Sbjct: 368 Q---DLYVA------SVLITMYVKCGDLVRAKGIFNRFL-FKDVVMWNSMITGYSQHGLG 417
Query: 482 KIAKIALQSSCS 493
+ A CS
Sbjct: 418 EEALNVFHDMCS 429
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 20/263 (7%)
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ--MPEKGVVSWTAMIN 269
+GY A M+ +++ S S I + R GD+ A ++F+ +P++ + SW AM++
Sbjct: 1 MGYGYAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVS 60
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
+ ++ + AL +F QM + N + +S K G + +V + + +
Sbjct: 61 AYFESHKPRDALLLFDQM----PQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNV-- 114
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
T++V Y + G +E A +F E +++++WT MI GL R + A + F +
Sbjct: 115 --VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMI- 171
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
E D V ++ G++ A FD M+ +V T +V+ ++ G+V
Sbjct: 172 ---PEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR-----NVFTWTTMVSGYAKNGRV 223
Query: 450 DKALNFINKMPETPDFVIWGALF 472
D A MPE + V W A+
Sbjct: 224 DVARKLFEVMPERNE-VSWTAML 245
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N ++ T ++ S K+ ++ + + + A + + Q + +H+ A +F
Sbjct: 237 NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHR----ARMMF 292
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ ++ +N +I+ + F M R V N + V ASL+ L
Sbjct: 293 EGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLD 352
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H +V+S + D +V L MYV+ G A +F+ K+ V++WN +I
Sbjct: 353 HGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKD----VVMWNSMI 408
Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--- 257
G S+ G +A+ +F G+ P + +++ ++ G +K+ E+FE M
Sbjct: 409 TGYSQHGLGEEALNVFHDMCSSGVQPDE--VTFIGVLSACSYSGKVKEGFEIFEAMKCTY 466
Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
E G+ + M++ + G ++A+ + +M
Sbjct: 467 QVEPGIEHYACMVDLLGRAGRVDEAMELVEKM 498
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 218/428 (50%), Gaps = 40/428 (9%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+IRG +++ + + M+ PN TY F+ A LL G +H +V +G
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ FVR L ++Y G G +RKA
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDG--------------------------------VRKAR 88
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+F + +N+ SW SL+ G++R GD+ A +F++MPE+ VVSWT MI G +Q G ++
Sbjct: 89 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQ 148
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS----CNDFGLKGAIGT 335
AL +F +M AGV+ + +V+ALSACA++G L+ G +H+YI + L ++
Sbjct: 149 ALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNN 208
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE- 394
+L+ MYA CG I+ A VF +++ ++WT+MI G A G E+A+ F+ M GT+
Sbjct: 209 SLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDE 268
Query: 395 --PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PDG F+ +L AC ++G V +FF+ M + I P ++H+ +V+LLSR G +D+A
Sbjct: 269 GRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEA 328
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512
I MP P+ +WGAL CR HK+ ++A Q +L L QA Y
Sbjct: 329 HRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQ-KLALELKPDQAAGYLVLLSNVY 387
Query: 513 GDGRTWRE 520
+ W++
Sbjct: 388 ATAKRWQD 395
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/458 (33%), Positives = 238/458 (51%), Gaps = 61/458 (13%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
+D+A +FD + ++N L+ GL+ + +S F M+ SVRP+ T V
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES----FARMVCDGSVRPDATTLASVLP 220
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--ETPEKNK 195
+ A ++ +++GR +H K G+ V L +Y + G A +FD E P+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPD--- 277
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLID----------- 238
++ +N LI+G S G + +V LF G+ P N ++ V+LI
Sbjct: 278 ---LVAYNALISGYSVNGMVGSSVNLFTELMTLGLWP--NSSTLVALIPVHSPFGHDLLA 332
Query: 239 ----GFM--------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
GF+ R D++ A + F+ MPEK + SW AMI+G++QN
Sbjct: 333 QCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQN 392
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G E A+A+F QM+ VR N T+ S LSACA++GAL G +H I+ D +
Sbjct: 393 GLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVM 452
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TAL+DMYAKCG+I A +F K++++W AMI G +HG+ +A++ +K M+ +
Sbjct: 453 TALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLL 512
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P FL++L AC + G V+ F SM DY I P ++H T +V+LL R GQ+ +A
Sbjct: 513 PTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFE 572
Query: 455 FINKMPET---PDFVIWGALFCACRTHKDTKIAKIALQ 489
I++ P++ P +WGAL AC HKD+ +AK+A Q
Sbjct: 573 LISEFPKSAVGPG--VWGALLGACMVHKDSDLAKLASQ 608
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/493 (24%), Positives = 210/493 (42%), Gaps = 70/493 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+ L+ S++ + L QI A + H + T+ L+ ASL + L +F F
Sbjct: 22 LRLVALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHLLRLFRGFPRP 81
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-------SLL 145
+ + N L+R L S +F P+ ++ F + S+A+L +
Sbjct: 82 DRFLRNALLRSL------PSLRPRLLFPC-----PDSFSFAFAATSLAALCSRGGGAASS 130
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
S R LH L V +G D FV LA +Y L + A KVFD P S +LWN L
Sbjct: 131 SAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVP----SPDTVLWNTL 186
Query: 206 INGCSKIGYLRKAVELFGMM-------PKKNVASWV------------------------ 234
+ G S +AVE F M P + V
Sbjct: 187 LAGLSG----SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCG 242
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
LI + + GD++ A LF+ M + +V++ A+I+G+S NG ++ +F
Sbjct: 243 LAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFT 302
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+++ G+ N T+V+ + + G +H ++ + F + TA+ ++ +
Sbjct: 303 ELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLN 362
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++E+A F EK + +W AMI G A +G E A+ F++M+ P+ + L+
Sbjct: 363 DMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLS 422
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC G + L + + + +EP+V T ++++ ++ G + +A N M + +
Sbjct: 423 ACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTM-DNKNV 480
Query: 466 VIWGALFCACRTH 478
V W A+ H
Sbjct: 481 VSWNAMIAGYGLH 493
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 127/265 (47%), Gaps = 14/265 (5%)
Query: 38 IHSSNSTKQLRQ-IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
+HS L Q +H ++ A+S ++T + + ++ A FD K +
Sbjct: 322 VHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMES 381
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +I G A+N + ++ F M++L+VRPN +T + A L LSLG+ LH +I
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ +E + +V L DMY + G A ++F+ KN V+ WN +I G G
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKN----VVSWNAMIAGYGLHGQGA 497
Query: 217 KAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPE-----KGVVSWTAM 267
+A++L+ M ++ A+++S++ G +++ ++F M + G+ T M
Sbjct: 498 EALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCM 557
Query: 268 INGFSQNGEAEKALAMFFQMLDAGV 292
++ + G+ ++A + + + V
Sbjct: 558 VDLLGRAGQLKEAFELISEFPKSAV 582
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 12/263 (4%)
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACA 307
A ++F+ +P V W ++ G S +A+ F +M+ D VR + T+ S L A A
Sbjct: 168 ARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLPAAA 223
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+V + G VH++ + T L+ +Y+KCG++E+A +F ++ DL+ + A
Sbjct: 224 EVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNA 283
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I G +++G ++ F ++M G P+ + +A++ G LA +
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG 343
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
F S T + L R+ ++ A + MPE W A+ + T++A
Sbjct: 344 FTANS-PVSTAITTLHCRLNDMESARKAFDTMPEK-TMESWNAMISGYAQNGLTEMAVAL 401
Query: 488 LQSSCSLN-----LSIPQAMSYC 505
+ LN ++I +S C
Sbjct: 402 FEQMVKLNVRPNPITISSTLSAC 424
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 248/498 (49%), Gaps = 54/498 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--P 91
++S++ + + +Q+HA++I+H + + L ++ +D+A + FD
Sbjct: 10 LLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWK 69
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-----NRLTYPFVSKSVASLSLLS 146
+N H +N ++ G +++ +SC V +L +R + F K+ L LL
Sbjct: 70 RNRHSWNTILSGYSKS---KSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLE 126
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H L +K+G++ D +V L +MY Q G A KVFDE P +N +LW VL+
Sbjct: 127 NGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNS----VLWGVLM 182
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA--------------------------------SWV 234
G K + LF +M +A S++
Sbjct: 183 KGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFI 242
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
S+ID +++ L A +LFE E+ VV WT +I+GF++ A +A+ +F Q
Sbjct: 243 DQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQ 302
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML + N T+ + L +C+ +G+L G VH Y+ N + T+ +D YA+CGN
Sbjct: 303 MLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGN 362
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A VF ++++++W++MI I+G +E+A+ F M P+ F+++L+A
Sbjct: 363 IQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSA 422
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +SG VK F+SM DY + P +H+ +V+LL R G++ +A +FI+ MP P
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482
Query: 467 IWGALFCACRTHKDTKIA 484
WGAL ACR HK+ +A
Sbjct: 483 AWGALLSACRIHKEVDLA 500
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 170/386 (44%), Gaps = 48/386 (12%)
Query: 135 VSKSVASLSLLSLGRGLH------CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
V+++ A LS+LS + LH ++ G + + + L + Y+Q + A FD
Sbjct: 4 VNRNRALLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFD 63
Query: 189 ETP--EKNK------------------SESVLLWNVL---------------INGCSKIG 213
P ++N+ S+ +LL+N + I C +G
Sbjct: 64 RIPCWKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLG 123
Query: 214 YLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
L + + G+ K K+ SL++ + + G ++ A ++F++MP + V W ++
Sbjct: 124 LLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMK 183
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-G 328
G+ + + + +F+ M D G+ + T++ + AC V A + G VH F
Sbjct: 184 GYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFID 243
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
G + +++DMY KC ++ A +F + E++++ WT +I G A R +AI F++M
Sbjct: 244 QSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQM 303
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ P+ AIL +C G ++ + M IE + T ++ +R G
Sbjct: 304 LGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYM-IRNGIEMDAVNFTSFIDTYARCGN 362
Query: 449 VDKALNFINKMPETPDFVIWGALFCA 474
+ A + MP+ + + W ++ A
Sbjct: 363 IQMARKVFDMMPKR-NVISWSSMINA 387
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 41/326 (12%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +F+ +N+ ++ LI G A+ I F ML S+ PN T + S
Sbjct: 262 LDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVS 321
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+SL L G+ +H ++++G+E DA D Y + G + A KVFD P++N
Sbjct: 322 CSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRN---- 377
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
V+ W+ +IN G +A++ F M +N+ ++VSL+ G++K+ + FE
Sbjct: 378 VISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFE 437
Query: 255 QMP-EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + G+V + M++ + GE +A + ++ V SA
Sbjct: 438 SMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFI----------DNMPVKPMASAW--- 484
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GAL + R+H + L G I L+ M E++ V D A +
Sbjct: 485 GALLSACRIHKEVD-----LAGEIAEKLLSMEPD----ESSVYVLLSNIYAD-----AGM 530
Query: 370 WGLAIHGRYEQAIQ-YFKKMMYSGTE 394
W + R++ I+ Y K M S TE
Sbjct: 531 WEMVNCVRHKMGIKGYRKPMGLSATE 556
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 165/545 (30%), Positives = 264/545 (48%), Gaps = 66/545 (12%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S I S+ + + ++++H + R+ LI + SID A +FD +++
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N +I GLA+N + F+ M + P+ TY + + S + +H
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V+ G+ D V MY++ G A +FD+ +N V WN +I G ++
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN----VTTWNAMIGGVAQQKCG 417
Query: 216 RKAVELFGMMPKK----------NVAS---------WV-------------------SLI 237
R+A+ LF M ++ N+ S WV +L+
Sbjct: 418 REALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALV 477
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ + G+ A ++F+ M E+ V +WT MI+G +Q+G +A ++F QML G+ +
Sbjct: 478 HMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT 537
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T VS LSACA GALE VH++ +G ALV MYAKCG+++ A VF +
Sbjct: 538 TYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM 597
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
E+D+ +WT MI GLA HGR A+ F KM G +P+G F+A+L+AC ++G V
Sbjct: 598 LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGR 657
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F S+ DY IEP+++H+T +V+LL R GQ+++A +FI MP P WGAL AC T
Sbjct: 658 RQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVT 717
Query: 478 HKDTKIAKIALQSSCSLNLSIPQAMSY------------------CQTFMQQKG----DG 515
+ + ++A+ A + L L A +Y ++ MQ++G G
Sbjct: 718 YGNLEMAEFAAKE--RLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPG 775
Query: 516 RTWRE 520
R+W E
Sbjct: 776 RSWIE 780
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 167/346 (48%), Gaps = 45/346 (13%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+I G AE + + + + M R +PN +TY + K+ S L G+ +H I++SG
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ D V L +MYV+ G A +FD+ E+N V+ W V+I G + G ++A
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERN----VISWTVMIGGLAHYGRGQEAF 116
Query: 220 ELFGMMPKK----NVASWVSLIDG-----------------------------------F 240
F M ++ N ++VS+++ +
Sbjct: 117 HRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMY 176
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G + A +F+ M E+ + SWT MI G +Q+G ++A ++F QM G N T +
Sbjct: 177 AKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYL 236
Query: 301 SALSACA--KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
S L+A A GALE VH + F +G AL+ MYAKCG+I+ A LVF
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
++D+++W AMI GLA +G +A F KM G PD T +L++L
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 143/539 (26%), Positives = 232/539 (43%), Gaps = 81/539 (15%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
A+ + ++ N IT I+ S S K ++IHA II + R+ T L++
Sbjct: 14 AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
SID A IFD +N+ + V+I GLA Q F+ M R PN T
Sbjct: 74 MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYT 133
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
Y + + AS L + +H V +G+ D V L MY + G A VFD
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLID--------- 238
E++ + W V+I G ++ G ++A LF M + N+ +++S+++
Sbjct: 194 ERD----IFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGA 249
Query: 239 --------------GFM--------------RKGDLKKAGELFEQMPEKGVVSWTAMING 270
GF+ + G + A +F+ M ++ V+SW AMI G
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG 309
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+QNG +A +F +M G + T +S L+ GA E VH + + GL
Sbjct: 310 LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAV--EVGLV 367
Query: 331 G--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+G+A V MY +CG+I+ A L+F + +++ TW AMI G+A +A+ F +M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427
Query: 389 MYSGTEPDGTVFLAILTAC-------WY---------SGQVKLALN-------------F 419
G PD T F+ IL+A W +G V L +
Sbjct: 428 RREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTM 487
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN-FINKMPE--TPDFVIWGALFCAC 475
+ FD +E +V TV+++ L++ G +A + F+ + E PD + ++ AC
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSAC 546
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 8/305 (2%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G A KV+ + + + + + ++ C L+ ++ + + S
Sbjct: 5 YAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSD 64
Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
V +L++ +++ G + A +F++M E+ V+SWT MI G + G ++A F QM
Sbjct: 65 VRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQR 124
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
G N +T VS L+A A GALE VH++ L +G ALV MYAK G+I+
Sbjct: 125 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 184
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL--TAC 407
A +VF E+D+ +WT MI GLA HGR ++A F +M G P+ T +L+IL +A
Sbjct: 185 ARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAI 244
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+G ++ FI ++ ++++ ++ G +D A + M + D +
Sbjct: 245 TSTGALEWVKEVHKHAGKAGFI-SDLRVGNALIHMYAKCGSIDDARLVFDGMCDR-DVIS 302
Query: 468 WGALF 472
W A+
Sbjct: 303 WNAMI 307
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 53/396 (13%)
Query: 32 THIISLIHSSNST---KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
T +SL+++ ST + ++++H + L + R+ + + SID A IFD
Sbjct: 336 TTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDK 395
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+N+ +N +I G+A+ + +S F+ M R P+ T+ + + L
Sbjct: 396 LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWV 455
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + +G+ D V L MY + G T A +VFD+ E+N V W V+I+G
Sbjct: 456 KEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERN----VTTWTVMISG 510
Query: 209 CSKIGYLRKAVELFGMMPKKNVA-------------------SWV--------------- 234
++ G +A LF M ++ + WV
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570
Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+L+ + + G + A +F+ M E+ V SWT MI G +Q+G AL +F +M
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKL 630
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-CNDFGLKGAIG--TALVDMYAKCGN 346
G + N ++ V+ LSAC+ G ++ G R ++S D+G++ + T +VD+ + G
Sbjct: 631 EGFKPNGYSFVAVLSACSHAGLVDEGRR--QFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688
Query: 347 IEAAS-LVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+E A + E W A++ +G E A
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA 724
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI G+++ G AE A+ ++ QM G + N+ T +S L AC +L+ G ++H +I +
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
F + TALV+MY KCG+I+ A L+F + E+++++WT MI GLA +GR ++A F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M G P+ +++IL A +G ++ + S + + ++ +V++ ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEW-VKEVHSHAVNAGLALDLRVGNALVHMYAKS 179
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTH 478
G +D A + M E D W + H
Sbjct: 180 GSIDDARVVFDGMVER-DIFSWTVMIGGLAQH 210
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 144/336 (42%), Gaps = 24/336 (7%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T +I+S + + ++++H+ I L R+ L+ + + YA +FD
Sbjct: 438 TFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDM 496
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+N+ + V+I GLA++ S F+ MLR + P+ TY + + AS L +
Sbjct: 497 VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVK 556
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H V +G+ D V L MY + G A +VFD+ E++ V W V+I G
Sbjct: 557 EVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERD----VYSWTVMIGGL 612
Query: 210 SKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKG 260
++ G A++LF M K N S+V+++ G + + F + E
Sbjct: 613 AQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPT 672
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+ +T M++ + G+ E+A M + D + L AC G LE +
Sbjct: 673 MEHYTCMVDLLGRAGQLEEAKHFILNM---PIEPGDAPWGALLGACVTYGNLE----MAE 725
Query: 321 YISCNDFGLKGAIGTALV---DMYAKCGNIEAASLV 353
+ + LK + V ++YA GN E LV
Sbjct: 726 FAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLV 761
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/510 (28%), Positives = 245/510 (48%), Gaps = 52/510 (10%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYA 82
+ S ++ ++++ ++ L Q+HA + A+ T LI A+ S + YA
Sbjct: 2 RCSPQLSHRDFVAVLSRCSTRAHLEQLHAHAFVAGRAAAQTTTFHLIRFAAFRLSCLTYA 61
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH-----------FVFMLRLS-VRPNRL 130
+FD ++ +++ ++ + S +H F+ MLR PN+
Sbjct: 62 RHLFDATPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQF 121
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
YP V ++ + + + + + +H KSG +R + D Y
Sbjct: 122 VYPLVLRAASGVGV-GIVKSIHSHACKSGFCGHDIIRTSVLDGY---------------- 164
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
S+ G + A +LF + ++NV SW +L+ G+ R G + A
Sbjct: 165 -------------------SRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAI 205
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE+MPE+ V +W A+I G SQNG +A+ +F +M+ AG R N TV LSAC +G
Sbjct: 206 VLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLG 265
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L+ G +H Y G ++ L+DMY KCGN+E A +F E ++ L TW ++I
Sbjct: 266 MLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLIN 325
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
LA+HG + AI F +M G EPD F+ +L AC + G V + +F+ M+ ++ IE
Sbjct: 326 CLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIE 385
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +++LL R G+ ALN I+ M D V+WG+L ACR H+ + A++A++
Sbjct: 386 PEIEHYGCIIDLLGRAGRFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRK 445
Query: 491 SCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L+ P +Y +G W E
Sbjct: 446 LLELD---PNNANYVVMLANVYSEGGLWEE 472
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 191/316 (60%), Gaps = 4/316 (1%)
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
MY + G+ A FDE P ++ V L NV++ + +A ++F MP +++ S
Sbjct: 1 MYAKAGRVDLARDAFDEAPLRD----VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVS 56
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
W ++I G+ +G++ A E+F+ ++ SW++MI+ ++++ +++AL ++ +M A +
Sbjct: 57 WNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ T+VS +SAC+ +GAL G VH ++ N L +GTAL+DMYAKCG+IE+A
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQR 176
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF EKD+ TW++MI GLA HG +++ F KM+ G +P+G F+ +L AC + G
Sbjct: 177 VFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGL 236
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V +F SM + IEP+V+H+ +V+LL R G V++A I M PD +IW AL
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296
Query: 473 CACRTHKDTKIAKIAL 488
ACR HK+ +IA+ A+
Sbjct: 297 GACRIHKNVEIAEEAM 312
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 20/332 (6%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSK 137
+D A FD +++ + NV++ S F M +R V N + + + +
Sbjct: 8 VDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMR 67
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
GL I + DAF + Y + +++ A +++ E +
Sbjct: 68 GEV---------GLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIP 118
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELF 253
+ +++ CS +G L E+ + + +LID + + GD++ A +F
Sbjct: 119 DCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVF 178
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
++MPEK V +W++MI G + +G ++L++F +M+ G++ N T V L AC VG +
Sbjct: 179 DRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVS 238
Query: 314 AGVRVHNYISCNDF-GLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMI 369
G + + S N+ G++ + +VD+ + G++E A L+ T E D + W A++
Sbjct: 239 EGKKY--FRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
IH E A + K+ DG L
Sbjct: 297 GACRIHKNVEIAEEAMAKLRVLDPLGDGHYVL 328
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I ++ + A IFD ++ ++ +I A++ + + + M S+ P+
Sbjct: 60 MIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPD 119
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T V + + L L++G +H + + +E D + L DMY + G A +VFD
Sbjct: 120 CITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFD 179
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKG 244
PEK+ V W+ +I G + G +++ LF M K N ++V ++ G
Sbjct: 180 RMPEKD----VQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG 235
Query: 245 DLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+ + + F M E V + M++ ++G E+A + M
Sbjct: 236 LVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSM 283
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 244/478 (51%), Gaps = 50/478 (10%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKS 78
S+ K N + + SL S S Q++Q HA +I L +L+ AS S
Sbjct: 6 STFKKPLNSNQLQLFSL-ESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGS 64
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRG---LAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
+ YA +FD ++ I+N +I+ + +SH + + F+ M+R+S PNR T+ F
Sbjct: 65 LSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSH--NSMRIFLSMVRVSGFLPNRYTFVF 122
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V K+ + + G + +K G+E + FV + MY G A +VFD
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD------ 176
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
W++ +++ SW +I G++ G++ +A E+F+
Sbjct: 177 -------WSL----------------------DQDLYSWNIMIGGYVGSGEIGRAKEMFD 207
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M E+ VVSWT +I G+ Q G ++AL +F +ML G N+FT+ SAL+ACA + AL+
Sbjct: 208 EMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQ 267
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL--LTWTAMIWGL 372
G +H YI ++ + + +L+DMYAKCG I+ A+ VF + L W AMI G
Sbjct: 268 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 327
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A+HG+ ++AI F++M P+ F+A+L AC + V+ +F SM Y IEP
Sbjct: 328 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 387
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD----TKIAKI 486
++H+ +V+LL R G + +A + MP PD IWGAL ACR HKD +I KI
Sbjct: 388 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 445
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/459 (30%), Positives = 226/459 (49%), Gaps = 45/459 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LIS + + A +FD +N+ + ++RG N F M +V
Sbjct: 92 LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV--- 148
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
VS +V LL GR + E D ++ Y + G+ A +F
Sbjct: 149 ------VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE P++N V+ W +++G ++ G + A +LF +MP++N SW +++ G+ G ++
Sbjct: 203 DEMPKRN----VVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMR 258
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA--------------------------- 280
+A LF+ MP K VV MI GF NGE +KA
Sbjct: 259 EASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318
Query: 281 ----LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
L +F +M G+ N +++S LS C + +L+ G +VH + ++F + +
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASV 378
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+ MY KCGN+ A VF KD++ W +MI G + HG E+A+ F M SG PD
Sbjct: 379 LITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPD 438
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+ +L+AC YSG+VK L F++M+ Y +EP ++H+ +V+LL R QV++A+ +
Sbjct: 439 DVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLV 498
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
KMP PD ++WGAL ACRTH +A++A++ L
Sbjct: 499 EKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 158/299 (52%), Gaps = 20/299 (6%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G+ A KVFDETP +++ S WN ++ + R+A+ LF MP++N SW
Sbjct: 32 YARNGQLDHARKVFDETPLPHRTVSS--WNAMVAAYFEARQPREALLLFEKMPQRNTVSW 89
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
LI G ++ G L +A +F+ MP++ VVSWT+M+ G+ +NG+ +A +F+ M V
Sbjct: 90 NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ +TV+ L + G ++ ++ + + D T ++ Y + G ++ A +
Sbjct: 150 S--WTVM--LGGLLQEGRVDDARKLFDMMPEKDV----VAVTNMIGGYCEEGRLDEARAL 201
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E +++++TWTAM+ G A +G+ + A + F+ M E + + A+L +SG++
Sbjct: 202 FDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM----PERNEVSWTAMLLGYTHSGRM 257
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ A + FD+M ++P V + +++ G+VDKA M E D W A+
Sbjct: 258 REASSLFDAMP----VKPVVVCNEMIMG-FGLNGEVDKARRVFKGMKER-DNGTWSAMI 310
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 106/233 (45%), Gaps = 15/233 (6%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ ++I L+ +D A +F ++ ++ +I+ + + F M R
Sbjct: 274 VCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREG 333
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ N + V SL+ L G+ +H +V+S + D +V L MYV+ G A
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAK 393
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PKKNVASWVSLIDG 239
+VF+ P K+ V++WN +I G S+ G +A+ +F M P +V +++ ++
Sbjct: 394 QVFNRFPLKD----VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDV-TFIGVLSA 448
Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
G +K+ ELFE M E G+ + +++ + + +A+ + +M
Sbjct: 449 CSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKM 501
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 34/273 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
++S+ S S +Q+HAQ++ +L+ +S + T + +L + A +F+ F
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVR----AKQVFNRF 399
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLSLL 145
K++ ++N +I G +++ + ++ F M V P+ +T+ V S S L
Sbjct: 400 PLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGL 459
Query: 146 SLGRGLHCLI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L + C V+ G+E+ A L D+ + + A K+ ++ P + + ++W
Sbjct: 460 ELFETMKCKYQVEPGIEHYAC----LVDLLGRADQVNEAMKLVEKMPMEPDA---IVWGA 512
Query: 205 LINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
L+ C K+ AVE + KN +V L + + KG + L E++ + V
Sbjct: 513 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSV 572
Query: 262 V-----SWTA------MINGFSQNGEAEKALAM 283
SW M G G E+ + M
Sbjct: 573 TKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIM 605
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 245/483 (50%), Gaps = 48/483 (9%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HAQI++ + + ++T L++ + + I+ + +F+ T N+ +N +I G N
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ F+ M+ V P+ T+ V+K++ L ++ + + ++ GV+ + V
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312
Query: 170 LADMYVQLGKTRGAFKVFDE---TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DM + G + A +F+ T N WN +I+G + G+ KA+ELF M
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAP-----WNAMISGYLRSGFNEKALELFAKMC 367
Query: 227 KKNV------------------------------------ASWVSL----IDGFMRKGDL 246
+ ++ ++VS+ + + + G L
Sbjct: 368 QNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ ++F +M ++ ++SWT+++ +SQ E +KA+ +F M G+ N FT S L +C
Sbjct: 428 EDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSC 487
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A + LE G +VH I + I +ALVDMYAKCG + A VF D ++WT
Sbjct: 488 ANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWT 547
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
A+I G A HG + A+Q F++M+ G EP+ FL +L AC + G V+ L +F M+
Sbjct: 548 AIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKT 607
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y + P ++H+ +V+LLSRVG ++ A+ FI++MP P+ ++W L ACR H + ++ ++
Sbjct: 608 YGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGEL 667
Query: 487 ALQ 489
A Q
Sbjct: 668 AAQ 670
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 230/547 (42%), Gaps = 103/547 (18%)
Query: 16 TTNIKSSHKPSNNITETHI-----ISLIHSSNSTKQLRQ---IHAQIILHNLFASSR--- 64
T+ IK+ + + T++H+ + L+ + L+Q +H +L + F++
Sbjct: 48 TSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVHG-FLLKSKFSNHHSLV 106
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + + S ID A +FD + +N + VLI GLAEN F F M
Sbjct: 107 LLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQG 166
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ P++ Y + + L + LG +H IV G FV L +MY +L + ++
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---------------------- 222
KVF+ E N V+ WN +I G + A +LF
Sbjct: 227 KVFNTMTEVN----VVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAI 282
Query: 223 GMMPKKNVASWVS-----------------LIDGFMRKGDLKKAGELFEQ--MPEKGVVS 263
GM+ N A VS LID + G L++A +F + +
Sbjct: 283 GMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP 342
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH---- 319
W AMI+G+ ++G EKAL +F +M + + +T S +A A + L G +VH
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 320 ------NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
NY+S I A+ + YAKCG++E VF +++DL++WT+++ +
Sbjct: 403 KSGLEVNYVS---------ISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW------YSGQV-----KLALNFFDS 422
+++AI+ F M G P+ F ++L +C Y QV K+ L+
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLD---- 509
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
D IE + +V++ ++ G + A N++ D V W A+ H
Sbjct: 510 --MDKCIE------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAG---HAQHG 557
Query: 483 IAKIALQ 489
I ALQ
Sbjct: 558 IVDDALQ 564
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 127/278 (45%), Gaps = 17/278 (6%)
Query: 48 RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
+++HA+ I L + I+ + ++ + S++ +F+ ++L + L+ ++
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
S + I F M + PN+ T+ V S A+L LL G+ +H +I K G++ D +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DMY + G A KVF+ + + W +I G ++ G + A++LF M
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNAD----TVSWTAIIAGHAQHGIVDDALQLFRRMV 570
Query: 227 K----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEA 277
+ N +++ ++ G +++ + F+ M + G+V + +++ S+ G
Sbjct: 571 QLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHL 630
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
A+ +M V N+ + L AC G +E G
Sbjct: 631 NDAMEFISRM---PVEPNEMVWQTLLGACRVHGNVELG 665
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 220/460 (47%), Gaps = 46/460 (10%)
Query: 37 LIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
L+ + L+Q HAQ+ N FA SR+ S S+ YA +F+
Sbjct: 11 LLEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLA--FCSHPYQGSLTYACRVFERIHHP 68
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
L I N +I+ N +F F ML + P+ T P+V K+ A+L SLG+ +H
Sbjct: 69 TLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVH 128
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
K G+ +D FV L MY G A VFDE
Sbjct: 129 GYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDE----------------------- 165
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
MP+ + SW +I G+ + GD+ A F++ PEK W AMI+G+
Sbjct: 166 ------------MPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYV 213
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
QN ++ L +F + V ++ VS LSACA +GAL+ G+ +H Y++ L
Sbjct: 214 QNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIR 273
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ T+L+DMYAKCGN+E A +F E+D++ W AMI GLA+HG A++ F +M +G
Sbjct: 274 LSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTG 333
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+PD F+A+ TAC YSG L D M Y IEP +H+ +V+LLSR G +A
Sbjct: 334 IKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEA 393
Query: 453 LNFINKMPET-----PDFVIWGALFCACRTHKDTKIAKIA 487
+ I ++ T + + W A AC H ++A+ A
Sbjct: 394 MVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERA 433
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 245/468 (52%), Gaps = 53/468 (11%)
Query: 38 IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I +T+ L+QIHA I +H+ A++ + L + S + I YA F N
Sbjct: 22 ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFL--TLSTQREIKYARKFFSQIHHPN 79
Query: 94 LHIFNVLIRGLAENS-----HFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLL 145
+N +IR LA++ H S + F L+ V PN+ T+P V K+ A L+ +
Sbjct: 80 CFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARI 139
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G+ LH +VK G+ D FVR +L +YV G + A +F +T + +V+LWNV+
Sbjct: 140 EEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEG---NVVLWNVM 196
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
I+G ++G LR + ELF MP K+V SW +I G + G K+A E+F M
Sbjct: 197 IDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM--------- 247
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
Q+ D V N T+VS L A +++GA+E G VH + N
Sbjct: 248 --------------------QLGD--VPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKN 285
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + +G+AL+DMY+KCG+I+ A VF G +K+ +TW+A+I GLA+HGR A+ +
Sbjct: 286 EIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDH 345
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F +M +G P V++ +L+AC ++G V+ + + M + P ++H+ +V+LL
Sbjct: 346 FWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLG 405
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD----TKIAKIAL 488
R G +++A I MP PD VI AL AC+ H + +IAKI +
Sbjct: 406 RAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILM 453
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 16/288 (5%)
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD K++ +NV+I G A+N HF+ I F M V PN +T V +V+ L
Sbjct: 211 ELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLG 270
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ LG+ +H K+ +E D + L DMY + G A +VF+ +NK + W+
Sbjct: 271 AIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGI--RNKKNPI-TWS 327
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPE- 258
+I G + G R A++ F M + V ++ ++ G +++ ++ M
Sbjct: 328 AIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNI 387
Query: 259 ----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+ + M++ + G E+A + M V+ +D + + L AC G +E
Sbjct: 388 VGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNM---PVKPDDVILKALLGACKMHGNIEM 444
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
G R+ I + AL +M+A GN E V + KE D+
Sbjct: 445 GERIAK-ILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDI 491
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 245/483 (50%), Gaps = 48/483 (9%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HAQI++ + + ++T L++ + + I+ + +F+ T N+ +N +I G N
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ F+ M+ V P+ T+ V+K++ L ++ + + ++ GV+ + V
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312
Query: 170 LADMYVQLGKTRGAFKVFDE---TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DM + G + A +F+ T N WN +I+G + G+ KA+ELF M
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAP-----WNAMISGYLRSGFNEKALELFAKMC 367
Query: 227 KKNV------------------------------------ASWVSL----IDGFMRKGDL 246
+ ++ ++VS+ + + + G L
Sbjct: 368 QNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ ++F +M ++ ++SWT+++ +SQ E +KA+ +F M G+ N FT S L +C
Sbjct: 428 EDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSC 487
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A + LE G +VH I + I +ALVDMYAKCG + A VF D ++WT
Sbjct: 488 ANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWT 547
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
A+I G A HG + A+Q F++M+ G EP+ FL +L AC + G V+ L +F M+
Sbjct: 548 AIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKT 607
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y + P ++H+ +V+LLSRVG ++ A+ FI++MP P+ ++W L ACR H + ++ ++
Sbjct: 608 YGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGEL 667
Query: 487 ALQ 489
A Q
Sbjct: 668 AAQ 670
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 230/547 (42%), Gaps = 103/547 (18%)
Query: 16 TTNIKSSHKPSNNITETHI-----ISLIHSSNSTKQLRQ---IHAQIILHNLFASSR--- 64
T+ IK+ + + T++H+ + L+ + L+Q +H +L + F++
Sbjct: 48 TSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVHG-FLLKSKFSNHHSLV 106
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + + S ID A +FD + +N + VLI GLAEN F F M
Sbjct: 107 LLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQG 166
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ P++ Y + + L + LG +H IV G FV L +MY +L + ++
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---------------------- 222
KVF+ E N V+ WN +I G + A +LF
Sbjct: 227 KVFNTMTEVN----VVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAI 282
Query: 223 GMMPKKNVASWVS-----------------LIDGFMRKGDLKKAGELFEQ--MPEKGVVS 263
GM+ N A VS LID + G L++A +F + +
Sbjct: 283 GMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP 342
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH---- 319
W AMI+G+ ++G EKAL +F +M + + +T S +A A + L G +VH
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 320 ------NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
NY+S I A+ + YAKCG++E VF +++DL++WT+++ +
Sbjct: 403 KSGLEVNYVS---------ISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW------YSGQV-----KLALNFFDS 422
+++AI+ F M G P+ F ++L +C Y QV K+ L+
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLD---- 509
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
D IE + +V++ ++ G + A N++ D V W A+ H
Sbjct: 510 --MDKCIE------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAG---HAQHG 557
Query: 483 IAKIALQ 489
I ALQ
Sbjct: 558 IVDDALQ 564
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 127/278 (45%), Gaps = 17/278 (6%)
Query: 48 RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
+++HA+ I L + I+ + ++ + S++ +F+ ++L + L+ ++
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
S + I F M + PN+ T+ V S A+L LL G+ +H +I K G++ D +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DMY + G A KVF+ + + W +I G ++ G + A++LF M
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNAD----TVSWTAIIAGHAQHGIVDDALQLFRRMV 570
Query: 227 K----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEA 277
+ N +++ ++ G +++ + F+ M + G+V + +++ S+ G
Sbjct: 571 QLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHL 630
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
A+ +M V N+ + L AC G +E G
Sbjct: 631 NDAMEFISRM---PVEPNEMVWQTLLGACRVHGNVELG 665
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 222/444 (50%), Gaps = 41/444 (9%)
Query: 46 QLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
++QI + + L + FA+ RI + + S I +A +F + I+N ++
Sbjct: 3 HIKQIQSHLTVSGTLFDPFAAGRIIS--FCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 60
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
R + + +S + +ML PN T+ F+ ++ A LS LS G LH V+ G E
Sbjct: 61 RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 120
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
FV+ L +Y A ++FD + ++ V+ W +ING +K G + A +L
Sbjct: 121 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRD----VVTWTAVINGYAKSGQVVVARQL 176
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F MP+KN SW ++I G+ + G ++A ELF M
Sbjct: 177 FDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQI----------------------- 213
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
AG R N +V AL+ACA +GAL+ G +H Y+ N L +GTAL+DMY
Sbjct: 214 --------AGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMY 265
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG +E A VF E ++D+ +T++I GLA HG AI+ F +M G P+ F+
Sbjct: 266 AKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFI 325
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC G V+ L F SM Y IEP V+H+ +V+LL R G ++ A + +MP
Sbjct: 326 CLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPL 385
Query: 462 TPDFVIWGALFCACRTHKDTKIAK 485
PD + GAL ACR H D ++ K
Sbjct: 386 EPDSYVLGALLNACRVHGDVELGK 409
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 182/327 (55%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A +VFDE P+K + + +NV+I G ++ + ELF
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKRE----MSYNVMIAGYAQYKRMDMGRELF 304
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP N+ SW +I G+ + GDL +A LF+ MP++ VSW A+I G++QNG E+A+
Sbjct: 305 EEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMN 364
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
M +M G N T ALSACA + ALE G +VH + + +G ALV MY
Sbjct: 365 MLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYC 424
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG I+ A VF + KD+++W M+ G A HG QA+ F+ M+ +G +PD +
Sbjct: 425 KCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVG 484
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G +F SM DY I P+ KH+ +++LL R G +++A N I MP
Sbjct: 485 VLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFE 544
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD WGAL A R H + ++ + A +
Sbjct: 545 PDAATWGALLGASRIHGNMELGEQAAE 571
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 154/321 (47%), Gaps = 33/321 (10%)
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ +++ V Y+A + +L + L + +FD+ P K+ + WN+++ G ++
Sbjct: 59 MPLRNSVSYNAMISGYLRNAKFSLAR-----DLFDKMPHKD----LFSWNLMLTGYARNR 109
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
LR A LF MP+K+V SW +++ G++R G + +A ++F++MP K +SW ++ + +
Sbjct: 110 RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVR 169
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSA---LSACAKVGALEAGVRVHNYISCNDFGLK 330
+G E+A +F +D+ ++S + K L ++ + I D
Sbjct: 170 SGRLEEARRLFES-------KSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDL--- 219
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
++ YA+ G++ A +F E+ +D+ TWTAM++ G ++A + F +M
Sbjct: 220 -ISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM-- 276
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+ + ++ ++ + F+ M F P++ ++++ + G +
Sbjct: 277 --PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWNIMISGYCQNGDLA 329
Query: 451 KALNFINKMPETPDFVIWGAL 471
+A N + MP+ D V W A+
Sbjct: 330 QARNLFDMMPQR-DSVSWAAI 349
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 163/387 (42%), Gaps = 28/387 (7%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I+ +IS Q R++ + + ++F + + + L D A +FD
Sbjct: 220 ISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML----DEARRVFDE 275
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K +NV+I G A+ F M PN ++ + L+
Sbjct: 276 MPQKREMSYNVMIAGYAQYKRMDMGRELFEEM----PFPNIGSWNIMISGYCQNGDLAQA 331
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R L ++ + D+ + Y Q G A + E +S + + ++
Sbjct: 332 RNLFDMMPQR----DSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387
Query: 209 CSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
C+ I L ++ G + + K +L+ + + G + +A ++F+ + K +VSW
Sbjct: 388 CADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSW 447
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
M+ G++++G +AL +F M+ AGV+ ++ T+V LSAC+ G + G + ++
Sbjct: 448 NTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMN- 506
Query: 325 NDFGL--KGAIGTALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRY--- 378
D+G+ ++D+ + G +E A +L+ E D TW A++ IHG
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILT 405
EQA + KM EP + +L+
Sbjct: 567 EQAAEMVFKM-----EPHNSGMYVLLS 588
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/482 (29%), Positives = 242/482 (50%), Gaps = 39/482 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+HA ++ H + + LIS S + A +FD ++ +N +I G N
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
F M V+P +T+ V KS ASL L+L + + C +KSG D V
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L + + A +F E ++V+ W +I+GC + G +AV LF M ++
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEE---GKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391
Query: 229 NV-----------------------------------ASWVSLIDGFMRKGDLKKAGELF 253
V + +L+D +++ G+ A ++F
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGAL 312
E + K +++W+AM+ G++Q GE E+A +F Q++ G++ N+FT S ++ACA A
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
E G + H Y + +ALV MYAK GNI++A VF KE+DL++W +MI G
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
+ HG+ ++A++ F +M + D F+ ++TAC ++G V+ +F+SM D+ I P+
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
+KH++ +++L SR G ++KA+ IN+MP P +W L A R H++ ++ ++A +
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691
Query: 493 SL 494
SL
Sbjct: 692 SL 693
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/477 (25%), Positives = 204/477 (42%), Gaps = 49/477 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H Q + L + T L+ ++++ +FD +N+ + L+ G + N
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWN 172
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M V PNR T V ++ + ++ +G +H ++VK G E V
Sbjct: 173 GLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVF 232
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L +Y +LG R A VFD K + + WN +I G + G + E+F
Sbjct: 233 NSLISLYSRLGMLRDARDVFD----KMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL 288
Query: 223 -GMMPK--------KNVASW-------------------------VSLIDGFMRKGDLKK 248
G+ P K+ AS +L+ + ++
Sbjct: 289 AGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDD 348
Query: 249 AGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF M E K VVSWTAMI+G QNG ++A+ +F QM GV+ N FT + L+
Sbjct: 349 ALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHY 408
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
V E +H + ++ ++GTAL+D Y K GN A VF + KDL+ W+A
Sbjct: 409 PVFVSE----MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSA 464
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
M+ G A G E+A + F +++ G +P+ F +++ AC F +
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKM 524
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ ++ + +V + ++ G +D A + E D V W ++ H K A
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQAKKA 580
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 198/448 (44%), Gaps = 53/448 (11%)
Query: 82 ALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
A ++FD P L N L+ + + + ++ FV +L S++P+ T V
Sbjct: 44 AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A LGR +HC VK G+ V L DMY++ +VFDE E+N V
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERN----V 159
Query: 200 LLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------- 234
+ W L+ G S G ELF G++P + S V
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219
Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
SLI + R G L+ A ++F++M + V+W +MI G+ +NG+ +
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+F +M AGV+ T S + +CA + L + + F + TAL+
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339
Query: 341 YAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
+KC ++ A +F +E K++++WTAMI G +G +QA+ F +M G +P+
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT 399
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+ AILT + V ++ + ++ +Y SV T +++ ++G A+ + ++
Sbjct: 400 YSAILTVHY---PVFVSEMHAEVIKTNYERSSSVG--TALLDAYVKLGNTIDAVK-VFEI 453
Query: 460 PETPDFVIWGALFCA-CRTHKDTKIAKI 486
E D + W A+ +T + + AK+
Sbjct: 454 IEAKDLMAWSAMLAGYAQTGETEEAAKL 481
>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 674
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H S+ A +FD +N+ + +IRG + + + F+ M R V+ N T
Sbjct: 208 HGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A+ SL G +H LI+ G E D F+ + MY + G A + FD +K+
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKD- 326
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + +A LF +M +K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 327 ---IVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQ 383
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K V+WTA+I+ F NG+ A+ F +M G + N LSA A + L G
Sbjct: 384 MPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG 443
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ H Y + A+ T+LV MYAKCG + A VF L+ +MI H
Sbjct: 444 RQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQH 503
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F KM +G +P+ FL ILT C +G V+ N+F+SMR Y +EP+ +H
Sbjct: 504 GFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEH 563
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G + +AL IN MP+ W AL A H + AKIA Q
Sbjct: 564 YTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQ 617
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ G ++G L A+ +F M ++V SW +++DG + G + +A +F+ MPE+ VV
Sbjct: 168 NALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVV 227
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWT+MI G+ + G L +F M GV+ N T+ AL ACA G+++HN I
Sbjct: 228 SWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLI 287
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
F L +G +++ MY++ G + A F ++KD+++W ++I G H E+A
Sbjct: 288 ISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAH 347
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
FK M + D + +++ G ++ ++ F+ M
Sbjct: 348 VLFKLM----HQKDAVSWTSMVVGFANRGWMRESVELFEQM 384
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 24/319 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G+ R A +FD+ P ++ V+ W L+ + G L A +F MP++N SW
Sbjct: 48 YGRRGRLRDAQLLFDQMPSRD----VISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+ ++R + A LF +MP K VS+ A+I+G ++ +A ++ +M +
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEM---PWQ 160
Query: 294 ANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
D +AL A +VG L +RV ++ D +A+VD K G++ A
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDV----ISWSAMVDGLCKHGSVSEARR 216
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E+++++WT+MI G G + F M G + + T L AC +
Sbjct: 217 VFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASL 276
Query: 413 VKLAL---NFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ + N SM F D F+ S ++ + SR G + A + M + D V
Sbjct: 277 AREGIQIHNLIISMGFELDIFLGDS------IIIMYSRFGWMVDAKRAFDCM-QQKDIVS 329
Query: 468 WGALFCACRTHKDTKIAKI 486
W +L H + A +
Sbjct: 330 WNSLITGYVQHDMVEEAHV 348
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ + R+G L+ A LF+QMP + V+SWTA++ ++ G+ A +F M +
Sbjct: 43 ALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPS 102
Query: 295 ---------------------------NDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
N + + +S AK L V+ + +
Sbjct: 103 WNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP---W 159
Query: 328 GLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ +G+ AL+ Y + G + A VF +D+++W+AM+ GL HG +A + F
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219
Query: 387 KM 388
M
Sbjct: 220 AM 221
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/512 (29%), Positives = 245/512 (47%), Gaps = 47/512 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ L + L++ + ++ A +FD + + +N +I G EN
Sbjct: 215 REVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFEN 274
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ + F+ ML V PN +T V+ + LS L + +H L VK G D
Sbjct: 275 HECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFC 334
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY LG+ A VF + ++ + W +I+G K G+ KA+E++ +M
Sbjct: 335 NSLIQMYSSLGRMGEACTVFS----RMETRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390
Query: 228 KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
NV+ +L++ + + ++K
Sbjct: 391 NNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEK 450
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F+ MP+K V+SW++MI GF N + +AL F ML A V+ N T ++AL+ACA
Sbjct: 451 AIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALAACAA 509
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
G+L G +H ++ +G + AL+D+Y KCG A FG KD+++W M
Sbjct: 510 TGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIM 569
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G HG + A+ +F +M+ +G PD F+A+L C +G V F SM Y
Sbjct: 570 LAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYS 629
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ +V+LLSRVG++ + NFIN+MP TPD +WGAL CR H++ ++ ++A
Sbjct: 630 IVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAA 689
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ L P Y D W E
Sbjct: 690 KIVLELE---PNDAGYHVLLSDLYADAGMWAE 718
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 207/467 (44%), Gaps = 77/467 (16%)
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+A +F +++ +NV++ G + + + + ML RP+ T+P V +S
Sbjct: 147 HAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCG 206
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ L++GR +H +++ G+ + V L MY + G A KVFD + +
Sbjct: 207 GVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTD----CI 262
Query: 201 LWNVLINGCSKIGYLRKAVELF----------------------GMMPKKNVASWV---- 234
WN +I G + +ELF G++ + A +
Sbjct: 263 SWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALA 322
Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
SLI + G + +A +F +M + +SWTAMI+G+ +NG +KAL
Sbjct: 323 VKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKAL 382
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
++ M V +D TV SAL+ACA +G L+ G+++H + F + ALV+MY
Sbjct: 383 EVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMY 442
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AK IE A VF +KD+++W++MI G + + +A+ YF+ M+ + +P+ F+
Sbjct: 443 AKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFI 501
Query: 402 AILTACWYSGQVKL--------------ALNFFDSMRFDYFIE----------------P 431
A L AC +G ++ + + + D +++
Sbjct: 502 AALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTK 561
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
V +++ G D AL+F N+M ET PD V + AL C C
Sbjct: 562 DVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGC 608
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 46/348 (13%)
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---------- 222
M V+ G+T A+KVF + PE++ V WNV++ G K G+L +A++L+
Sbjct: 138 MLVRFGETWHAWKVFAKMPERD----VFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARP 193
Query: 223 ------------GMMPKKNVASWV-----------------SLIDGFMRKGDLKKAGELF 253
G +P + V +L+ + + GD++ A ++F
Sbjct: 194 DVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVF 253
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ M +SW AMI G +N E E L +F ML+ V N T+ S A + L+
Sbjct: 254 DGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLD 313
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H F A +L+ MY+ G + A VF + +D ++WTAMI G
Sbjct: 314 FAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYE 373
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+G ++A++ + M + PD + L AC G++ + + + FI V
Sbjct: 374 KNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIV 433
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA-CRTHKD 480
+ +V + ++ ++KA+ MP+ D + W ++ C HK+
Sbjct: 434 VANA-LVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHKN 479
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 2/237 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+++ +R G+ A ++F +MPE+ V SW M+ G+ + G E+AL ++ +ML AG R
Sbjct: 134 AMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARP 193
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ +T L +C V L G VH ++ G++ + ALV MYAKCG++EAA VF
Sbjct: 194 DVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVF 253
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
D ++W AMI G + E ++ F M+ EP+ ++ A +
Sbjct: 254 DGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLD 313
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
A ++ V ++ + S +G++ +A ++M ET D + W A+
Sbjct: 314 FAKEIH-ALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRM-ETRDAMSWTAM 368
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 62/347 (17%)
Query: 49 QIHAQIILHNLFASSR------ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
++ I LH L S + L+ + K I+ A+ +F + K++ ++ +I
Sbjct: 412 RLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIA 471
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G N + +F ML V+PN +T+ + A+ L G+ +H +++ G+
Sbjct: 472 GFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIAS 530
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV------------------ 204
+ +V L D+YV+ G+T A+ F + ++ V+ WN+
Sbjct: 531 EGYVPNALLDLYVKCGQTGYAWAQFG----AHGTKDVVSWNIMLAGFVAHGHGDIALSFF 586
Query: 205 -----------------LINGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMR 242
L+ GCS+ G + + ELF M +K N+ + ++D R
Sbjct: 587 NEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSR 646
Query: 243 KGDLKKAGELFEQMP-EKGVVSWTAMINGFS-----QNGEAEKALAMFFQMLDAGVRAND 296
G L + +MP W A++NG + GE + + + DAG
Sbjct: 647 VGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLL 706
Query: 297 FTVVSALSACAKVGALEAGVRV----HNYISCNDFGLKGAIGTALVD 339
+ + A+V + +RV H+Y C+ +KGAI L D
Sbjct: 707 SDLYADAGMWAEVSKVRKTMRVKGLEHDY-GCSWVEVKGAIHAFLTD 752
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 13/202 (6%)
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRV--HNYISCNDFGLK 330
+GE ++AL +L++ D AL C A E G+R H + FGL+
Sbjct: 75 HGELQQAL----WLLESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLR 130
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+G A++ M + G A VF + E+D+ +W M+ G G E+A+ + +M++
Sbjct: 131 --LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLW 188
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+G PD F +L +C + + +RF +E V + +V + ++ G V
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLN--ALVTMYAKCGDV 246
Query: 450 DKALNFINKMPETPDFVIWGAL 471
+ A + M T D + W A+
Sbjct: 247 EAARKVFDGMSLT-DCISWNAM 267
>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
Length = 871
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 223/444 (50%), Gaps = 16/444 (3%)
Query: 69 LISSASLHKSIDYALSIFDHF----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
LISS + +D A+ + + ++ + L+ G + + F+ M
Sbjct: 273 LISSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLAG 332
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V PN +T + ASL LLS G LHC +K G + L DMY + G+ A
Sbjct: 333 VEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAK 392
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
++F+E PEK+ + WN ++ G ++ GY KA ELF M ++NV +W +I G+
Sbjct: 393 RIFNEIPEKD----IFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISGY 448
Query: 241 MRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+R GD ++A ELF+ M GV SW A+I G NG +++AL +F QM VR +
Sbjct: 449 IRNGDDERAFELFQMMESYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRPDY 508
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T++S + A A + A +H I N+ + G I AL++ Y+K G++ A VF
Sbjct: 509 ITILSIIPAFANLVAFSKVREIHACIFHNNLEMDGKIANALINAYSKSGDLAGACAVFDR 568
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+++++W +I +HG +A+ F +M G PD T A++ A G+V A
Sbjct: 569 HSSRNIISWNCIILAHLLHGSPCEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEA 628
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
F +M DY I P + H+ +V+LL R G + +A FI+ MP P+ +W AL A
Sbjct: 629 KQIFYNMTHDYNIHPDLDHYAAIVDLLGRSGSLQEAYEFIDNMPLIPNLAVWEALLTAAS 688
Query: 477 THKDTKIAKIALQSSCSLNLSIPQ 500
H + ++A +A + L+ S P+
Sbjct: 689 IHGNARLANLAARELSLLDPSDPR 712
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 199/423 (47%), Gaps = 36/423 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T+LI+ S + A +F+ ++L ++ +I A ++ +S V M+R V
Sbjct: 100 TKLITMHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYKDVVSLAVTMVREGVT 159
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG----VEYDAFVRVHLADMYV---QLGK 179
P+R + ++ A L LG +H L ++SG D V + MYV +LG+
Sbjct: 160 PDRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGR 219
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
R F EK + WN +I GC + +A L M ++ V +W +
Sbjct: 220 ARVVF-------EKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWNT 272
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
LI + R G+L A E+ EQM E G VV+WT++++GF + + +AL F +M AG
Sbjct: 273 LISSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLAG 332
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-----GTALVDMYAKCGN 346
V N T+ SA+SACA + L G+ +H C+ + G++ G +LVDMYAKCG
Sbjct: 333 VEPNGMTIASAISACASLRLLSQGMELH----CHAIKV-GSVNNVLSGNSLVDMYAKCGE 387
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I AA +F E EKD+ +W +M+ G A G +A + F KM G + + +++
Sbjct: 388 IVAAKRIFNEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISG 447
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TP 463
+G + A F M Y ++ ++ G D+AL +M P
Sbjct: 448 YIRNGDDERAFELFQMME-SYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRP 506
Query: 464 DFV 466
D++
Sbjct: 507 DYI 509
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
T L+ M++ G + A VF +DLL W+AMI AI G Y+ + M+ G
Sbjct: 100 TKLITMHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYKDVVSLAVTMVREGVT 159
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPS--VKHHTVVVNLLSRVGQVDK 451
PD + IL AC Y+ ++L + ++R + E + V V+ + + ++ +
Sbjct: 160 PDRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGR 219
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
A KM + D W ++ C + + A++ L
Sbjct: 220 ARVVFEKMGQR-DLGTWNSMIFGCCQSNEWEEARMLLD 256
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 8/193 (4%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
IT II + + ++R+IHA I +NL +I LI++ S + A ++FD
Sbjct: 509 ITILSIIPAFANLVAFSKVREIHACIFHNNLEMDGKIANALINAYSKSGDLAGACAVFDR 568
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSC--ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ +N+ +N +I LA H C + F M + VRP+ T V K+ +S
Sbjct: 569 HSSRNIISWNCII--LAHLLHGSPCEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVS 626
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+ + + + + D + D+ + G + A++ D P ++ +W L
Sbjct: 627 EAKQIFYNMTHDYNIHPDLDHYAAIVDLLGRSGSLQEAYEFIDNMP---LIPNLAVWEAL 683
Query: 206 INGCSKIGYLRKA 218
+ S G R A
Sbjct: 684 LTAASIHGNARLA 696
>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
Length = 521
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/502 (29%), Positives = 252/502 (50%), Gaps = 18/502 (3%)
Query: 33 HIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
I+S+I + R +HA II +F L++ + A +FD
Sbjct: 5 RIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDET 64
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLG 148
+N+ + +I + + + + +V ML S PN Y V K+ + L G
Sbjct: 65 LERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESG 124
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + ++ + +D + L DMYV+ G A KVFD+ + + WN +I+G
Sbjct: 125 KLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTS----WNTMISG 180
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGF-------MRKGDLKKAGELFEQMPEKGV 261
K G + +AV LF MP+ + SW S+I GF G +K A LF ++PEK +
Sbjct: 181 YGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGILIDLYANDGKIKDALRLFYRLPEKDI 240
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
V W+++I+ ++ G ++F M++ + + F + S L AC+ + L +G +VH++
Sbjct: 241 VVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSF 300
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ + + T+L+D+YAKCG IE +F T E+D + +T +I G +GR +A
Sbjct: 301 CVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEA 360
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ +F++M+ G +P+ FL +L+AC ++G V+ A F M+ +Y +EP ++H+ +V
Sbjct: 361 VGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVE 420
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA---LQSSCSLNLSI 498
LLS+ G +A I +MP PD IW +L AC THK T++ L ++ + SI
Sbjct: 421 LLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSI 480
Query: 499 PQAMSYCQTFMQQKGDGRTWRE 520
+S ++ D R RE
Sbjct: 481 LVTLSNVYATLEMWDDSRKMRE 502
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 238/488 (48%), Gaps = 46/488 (9%)
Query: 49 QIHAQIILHNLF-ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
QIHA II LF A+S +I+S + I A +FD + + +N +I +
Sbjct: 25 QIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRR 84
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
H ++ + M+ +P+ T+ K+ +SL L G + V G D FV
Sbjct: 85 YHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVG 144
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ ++YV+ GK A VFD+ +++ V+ W +I G + G + +AV++F M K
Sbjct: 145 SSVLNLYVKCGKIDEAKLVFDKMVKRD----VVCWATMITGLVQNGNVLEAVDMFRRMRK 200
Query: 228 K----------------------------------------NVASWVSLIDGFMRKGDLK 247
+ +V SL+D + + GDL+
Sbjct: 201 EGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLE 260
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A +FEQMP K VSW A+I+GF+QNG AE AL + +M + + +VSAL AC+
Sbjct: 261 LASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACS 320
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+VG L+ G +H YI G + +GTAL+DMYAKCG++ A +F +D++ W
Sbjct: 321 QVGHLKLGKSIHGYI-VRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNT 379
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI IHG ++ + F KM + PD F ++L+A +SGQV + +F++M +
Sbjct: 380 MIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNEC 439
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I PS KH+ +V+L SR G+V++A I M P IW AL C +++ ++A
Sbjct: 440 KIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVA 499
Query: 488 LQSSCSLN 495
+ LN
Sbjct: 500 AKKILDLN 507
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 206/391 (52%), Gaps = 36/391 (9%)
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL--LSLGRGLHCLIVKSGVEYDA 164
N + F M VRPN +T+ + + L L G +H + K G++
Sbjct: 67 NGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLD--- 123
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+E+V++ L++ SK G L A +F
Sbjct: 124 -------------------------------TENVMVGTALVDMYSKCGQLDLAWLMFDE 152
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
M +N SW ++IDG MR G++ +A LF+QM E+ +SWT+MI GF + G E+AL F
Sbjct: 153 MHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWF 212
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M AGV + T++S L+ACA +GAL G+ ++ ++ DF I +L+DMY++C
Sbjct: 213 REMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRC 272
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G I A VF + ++ L++W +MI G A++G E+A+++F M G PDG F L
Sbjct: 273 GCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGAL 332
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
TAC +SG V L FFD M+ I P ++H+ +V+L SR G+++ ALN I MP P+
Sbjct: 333 TACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPN 392
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
V+ G+L ACRTH D +A+ ++ C ++
Sbjct: 393 EVVLGSLLAACRTHGDVGLAERLMKYLCEVD 423
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 44/253 (17%)
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEA 314
P +VSWT+ I +NG+ +A A F +M AGVR N T ++ LSAC + L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 315 GVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGE--------------- 356
G +H Y+ GL +GTALVDMY+KCG ++ A L+F E
Sbjct: 110 GGSIHAYV--RKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDG 167
Query: 357 ----------------TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
E+D ++WT+MI G G +EQA+++F++M +G EPD
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227
Query: 401 LAILTACWYSGQVKLAL--NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
+++L AC G + L L N F M+ D+ + ++K ++++ SR G + A +
Sbjct: 228 ISVLAACANLGALGLGLWINRF-VMKQDF--KDNIKISNSLIDMYSRCGCIRLARQVFEQ 284
Query: 459 MPETPDFVIWGAL 471
MP+ V W ++
Sbjct: 285 MPKR-SLVSWNSM 296
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 147/340 (43%), Gaps = 39/340 (11%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I + + A+ +FD + ++ + +I G + F+ + F M V P+
Sbjct: 164 MIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPD 223
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T V + A+L L LG ++ ++K + + + L DMY + G R A +VF+
Sbjct: 224 YVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFE 283
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKG 244
+ P++ S++ WN +I G + G+ +A+E F +M K+ + S+ + G
Sbjct: 284 QMPKR----SLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSG 339
Query: 245 DLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + + F+ M +S + +++ +S+ G E AL + M ++ N+ +
Sbjct: 340 LVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANM---PMKPNEVVL 396
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S L+AC G + R+ Y+ D G L ++YA G + AS V + K
Sbjct: 397 GSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNY-VLLSNIYAAVGRWDGASKVRKKMK- 454
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
L IH KK +S E DG++
Sbjct: 455 -----------ALGIH----------KKPGFSSIEMDGSI 473
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/413 (36%), Positives = 213/413 (51%), Gaps = 46/413 (11%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSV 139
+ H + L ++N LI+ A +SH Q H F L +R PN+ T+ F+ +
Sbjct: 2 VLHHSSKPTLFLYNKLIQ--AYSSHPQH--QHRCFSLYSQIRLHGFLPNQHTFNFLFSAC 57
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
SLS SLG+ LH +KSG E D F L DMY
Sbjct: 58 TSLSSSSLGQMLHTHFIKSGFEPDLFAATALLDMY------------------------- 92
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
+K+G L A +LF MP + V W +++ G R GD+ A ELF MP +
Sbjct: 93 ----------AKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSR 142
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRV 318
VV WT MI+G+S N + +KAL +F M + G+ N T+VS L ACA + ALE G RV
Sbjct: 143 NVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRV 202
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGR 377
Y N F A+++MY KCG I+AA VF E ++L +W +M+ GLA+HG
Sbjct: 203 EAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGE 262
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+A++ + +M+ GT PD F+ +L AC G VK + F S ++I P ++H+
Sbjct: 263 CCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYG 322
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+V+LL R GQ+ +A I M PD VIWGAL AC H + ++A+IA +S
Sbjct: 323 CMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAEIAAES 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 134/367 (36%), Gaps = 105/367 (28%)
Query: 55 ILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAE-- 106
+LH F S L ++ +L +++ A +FD + + +N ++ GLA
Sbjct: 68 MLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFG 127
Query: 107 -----------------------------NSHFQSCISHFVFMLR-LSVRPNRLTYPFVS 136
N + + F+ M + + PN +T +
Sbjct: 128 DMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSIL 187
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A+L L +G+ + K+G + + + +MYV+ GK A++VF+E
Sbjct: 188 PACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNE------- 240
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
IG LR N+ SW S++ G G+ KA EL++
Sbjct: 241 ---------------IGSLR------------NLCSWNSMVVGLAVHGECCKALELYD-- 271
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
QML G +D T V L AC + G ++ G
Sbjct: 272 -----------------------------QMLGEGTSPDDVTFVGLLLACTQGGMVKKGR 302
Query: 317 RVHNYISCNDFGL-KGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAI 374
+ + + + + K +VD+ + G + EA ++ + + D + W A++ +
Sbjct: 303 HIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSF 362
Query: 375 HGRYEQA 381
HG E A
Sbjct: 363 HGNVELA 369
>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/500 (32%), Positives = 249/500 (49%), Gaps = 22/500 (4%)
Query: 4 HVFNRLTTAIA-PTTNIKSSHKPSNNITETH--IISLIHSSNSTKQLRQIHAQIILHNLF 60
H F R T ++ PT N +H + E++ +I S S +Q +++HA + +
Sbjct: 2 HAFVRTTQSLKIPTKNAIFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYV 61
Query: 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
+ I + LI+ + + A +FD N+H + LI A + F M
Sbjct: 62 RFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEM 121
Query: 121 LRLSVRPNRLTY--PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
L+ + + + P V K+ + G +HCL++K E DAFV L MY + G
Sbjct: 122 QTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCG 181
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV------ELFGMMPKKNVAS 232
+ R A KVFD K+ ++ N +++G ++ G +A+ +L G+ P NV +
Sbjct: 182 EVRDARKVFDGMVVKD----LVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNP--NVVT 235
Query: 233 WVSLIDGFMRKGDLKKAGELF----EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
W +LI GF +K D + E+F E E VVSWT++++GF QN E+A F +ML
Sbjct: 236 WNALISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKML 295
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
G T+ + L ACA + G +H Y + +ALVDMYAKCG I
Sbjct: 296 LLGFCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFIS 355
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTAC 407
A +F + EK+ +T +MI+G A HG E+AI+ F +M G D F A LTAC
Sbjct: 356 EARTLFYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTAC 415
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G ++L F M+ Y IEP ++H+ +V+L R G++++A I MP PD +
Sbjct: 416 SHVGDIELGQRLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFV 475
Query: 468 WGALFCACRTHKDTKIAKIA 487
WGAL ACR H ++A++A
Sbjct: 476 WGALLAACRNHGHVELAEVA 495
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 240/466 (51%), Gaps = 13/466 (2%)
Query: 33 HIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
H SLI +T+ L+ +H+ I L ++ + +LI S SI A +F
Sbjct: 16 HYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVL 75
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
KN H +N++I + + F + +L +PN ++Y + +
Sbjct: 76 PVKNTHSWNIIISAYSRSGLFNEAHN----LLDQMPKPNLVSYNSLISGLGHHGFRKESL 131
Query: 150 GLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
+ ++K S V +D F V L LG +V + ++++ N LI+
Sbjct: 132 NVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALID 191
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
K G + +F MP+++V SW S++ + + L+ A LF QM EK VSWTA+
Sbjct: 192 AYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTAL 251
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI---SC 324
I GF+QNG ++AL +F QM + G+ + FT S LSACA + + G +H +I +C
Sbjct: 252 IAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTC 311
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
D+ I AL+DMY KCG + +A+ +F EKD+++W ++I G A +G E+++
Sbjct: 312 IDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAV 371
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F++M+ + P+ FL +L+AC ++G V L DSM DY + P H+ ++++LL
Sbjct: 372 FERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLG 431
Query: 445 RVGQVDKALNFINKMPETPDFV-IWGALFCACRTHKDTKIAKIALQ 489
R ++++A+ I + P+ D V +WGAL ACR H + +A+ A +
Sbjct: 432 RNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAE 477
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 158/388 (40%), Gaps = 81/388 (20%)
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
S+ P Y + + L LG+ LH +K+ + + F+ L D Y + + A
Sbjct: 9 SLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSA 68
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
KVF P KN WN++I+ S+ G +A L MPK N+ S+ SLI G
Sbjct: 69 HKVFHVLPVKNTHS----WNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHH 124
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G K++ +F+ M ++ + V ++FT+VS +
Sbjct: 125 GFRKESLNVFKTMLKQC-----------------------------SNVLFDEFTLVSLV 155
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------------- 346
+CA +GA E +VH IG AL+D Y KCG
Sbjct: 156 GSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVV 215
Query: 347 --------------IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+E A +F + +EK+ ++WTA+I G A +GR ++A+ F++M G
Sbjct: 216 SWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEG 275
Query: 393 TEPDGTVFLAILTACWYSGQVKLAL---------NFFDSMRFDYFIEPSVKHHTVVVNLL 443
P F ++L+AC LAL + S DYF + ++++
Sbjct: 276 IPPSAFTFASVLSAC-----ADLALIARGKEIHGHIIRSTCIDYFCNIFIL--NALIDMY 328
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGAL 471
+ GQ+ A M E D V W +L
Sbjct: 329 CKCGQMRSATTLFKGMHEK-DIVSWNSL 355
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 211/408 (51%), Gaps = 35/408 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A IFD KNL ++N ++ + + ML+ RP+++T + A
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQ 344
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L LS+G+ H ++++G+E + + DMY++ GK A KVF+
Sbjct: 345 LGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEH------------ 392
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
MP K V +W SLI G +R GD++ A +F++M E+ +
Sbjct: 393 -----------------------MPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDL 429
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW MI Q E+A+ +F +M + G+ + T+V SAC +GAL+ V Y
Sbjct: 430 VSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTY 489
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I ND + +GTALVDM+++CG+ +A VF +++D+ WTA I +A+ G E A
Sbjct: 490 IEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGA 549
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
I+ F +M+ +PD VF+A+LTAC + G V F SM + I P + H+ +V+
Sbjct: 550 IELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVD 609
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
LL R G +++A++ I MP P+ V+WG+L ACR HK+ ++A A +
Sbjct: 610 LLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAE 657
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 246/543 (45%), Gaps = 89/543 (16%)
Query: 9 LTTAIAPTTN--IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA---SS 63
+ T + P++ + +S K +N IT L+ + + K+L+Q+H ++ L +S
Sbjct: 1 MATTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPAS 60
Query: 64 RITTQLISSASLH--KSIDYALSIF--DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + SS + +S+DYA + F D +L ++N LIRG A I +V
Sbjct: 61 NLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQ 120
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
ML + + P++ T+PF+ + + + LS G +H ++K G+E D FV L Y + GK
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGK 180
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------ 227
K+FD E+N V+ W LING S ++AV LF G+ P
Sbjct: 181 VDLGRKLFDGMLERN----VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVC 236
Query: 228 --------------KNVASWVS-------------LIDGFMRKGDLKKAGELFEQMPEKG 260
K V S++S L+D +M+ GD+ A ++F++ K
Sbjct: 237 VISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKN 296
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+V + +++ + + A L + +ML G R + T++S ++ACA++G L G H
Sbjct: 297 LVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356
Query: 321 YISCNDFGLKG--AIGTALVDMYAKCGNIEAASLV------------------------- 353
Y+ N GL+G I A++DMY KCG EAA V
Sbjct: 357 YVLRN--GLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414
Query: 354 ------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
F E E+DL++W MI L +E+AI+ F++M G D + I +AC
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
Y G + LA + + I ++ T +V++ SR G A++ +M E D
Sbjct: 475 GYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM-EKRDVSA 532
Query: 468 WGA 470
W A
Sbjct: 533 WTA 535
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
L++ CSKI L + V++ G + K + + SLI + G + +LF+ M E+
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERN 195
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSWT++ING+S +++A+++FFQM +AGV N T+V +SACAK+ LE G +V +
Sbjct: 196 VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCS 255
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YIS L + ALVDMY KCG+I AA +F E K+L+ + ++ H
Sbjct: 256 YISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASD 315
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ +M+ G PD L+ + AC G + + + + +E ++
Sbjct: 316 VLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSH-AYVLRNGLEGWDNISNAII 374
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ + G+ + A MP V W +L D ++A
Sbjct: 375 DMYMKCGKREAACKVFEHMPNKT-VVTWNSLIAGLVRDGDMELA 417
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 251/497 (50%), Gaps = 48/497 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L + K+ R+IH II + ++ + T ++S + + ID A +F+ K+
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L + L+ G A+N H + + + M +P+ +T + +VA + L +GR +H
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG 270
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+SG E V L DMY + G R A VF + +S++V+ WN +I+GC++ G
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVF----KGMRSKTVVSWNTMIDGCAQNG 326
Query: 214 YLRKAVELF------GMMPKK---------------------------------NVASWV 234
+A F G +P + NV+
Sbjct: 327 ESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMN 386
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SLI + + + A +F + EK V+W AMI G++QNG ++AL +F M G++
Sbjct: 387 SLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKL 445
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ FT+V ++A A +H +C D + + TALVDMYAKCG I+ A
Sbjct: 446 DCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV--FVSTALVDMYAKCGAIKTARK 503
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
+F +E+ ++TW AMI G HG ++ + F +M +P+ FL++++AC +SG
Sbjct: 504 LFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGF 563
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ L F SM+ DY++EP++ H++ +V+LL R GQ+D A NFI +MP P + GA+
Sbjct: 564 VEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAML 623
Query: 473 CACRTHKDTKIAKIALQ 489
AC+ HK+ ++ + A Q
Sbjct: 624 GACKIHKNVELGEKAAQ 640
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 223/501 (44%), Gaps = 54/501 (10%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
T + S PS + L+ + S K+L QI II + + T++IS
Sbjct: 41 TRVYSHRHPS--------VVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKF 92
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
S A +F+H K +++++++G A+NS + F+ M+ VR Y +
Sbjct: 93 GSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLL 152
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ L GR +H LI+ +G E + FV + +Y + + A+K+F E+ +
Sbjct: 153 QLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF----ERMQH 208
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVS----------------- 235
+ ++ W L+ G ++ G+ ++A++L M K + + VS
Sbjct: 209 KDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSI 268
Query: 236 ------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
L+D + + G + A +F+ M K VVSW MI+G +QNGE+
Sbjct: 269 HGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGES 328
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
E+A A F +MLD G T++ L ACA +G LE G VH + ++ +L
Sbjct: 329 EEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSL 388
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+ MY+KC ++ A+ +F EK +TW AMI G A +G ++A+ F M G + D
Sbjct: 389 ISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDC 447
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ ++TA V + + ++ +V T +V++ ++ G + A +
Sbjct: 448 FTLVGVITA-LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFD 506
Query: 458 KMPETPDFVIWGALFCACRTH 478
M E + W A+ TH
Sbjct: 507 MMQER-HVITWNAMIDGYGTH 526
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 188/433 (43%), Gaps = 51/433 (11%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
++ KP +++T I+ + + + R IH + +T L+ S
Sbjct: 239 EAGQKP-DSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSA 297
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
A +F K + +N +I G A+N + + F+ ML P R+T V +
Sbjct: 298 RIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLAC 357
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A+L L G +H L+ K ++ + V L MY + + A +F+ + N
Sbjct: 358 ANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN----- 412
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV--- 234
+ WN +I G ++ G +++A+ LF MM + + A W+
Sbjct: 413 VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGL 472
Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+L+D + + G +K A +LF+ M E+ V++W AMI+G+ +G ++
Sbjct: 473 AVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKET 532
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
L +F +M V+ ND T +S +SAC+ G +E G+ + + D+ L+ + +A+V
Sbjct: 533 LDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ-EDYYLEPTMDHYSAMV 591
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLT-WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
D+ + G ++ A E K ++ AM+ IH E + +K+ +PD
Sbjct: 592 DLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLF--KLDPDE 649
Query: 398 TVFLAILTACWYS 410
+ +L + S
Sbjct: 650 GGYHVLLANIYAS 662
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 225/421 (53%), Gaps = 25/421 (5%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
DY L + +NV +R A +S + + F+ MLR +RP+ T PF+ +
Sbjct: 67 DYVLLLLSSHPAPTAFSYNVALRFFA-SSRPDTSLRLFLSMLRAELRPDAYTLPFLLLAA 125
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A ++ R H + K G+ L MY LG A +VFD P ++ V
Sbjct: 126 ARCPSPAVARSAHAFLEKLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIPHRD----V 181
Query: 200 LLWNVLINGCSKIGYLRKAVELFG-MMPKKNVASWV-------------SLIDGFMRKGD 245
+ WN ++ Y R A G ++ K V WV +L+ + + G+
Sbjct: 182 VSWNSIMKA-----YERAACRDAGNLVLGKWVEEWVRSAGMEVDSLIGSALVGMYEKCGE 236
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+++A +F+ + K VV+W AMI G++QNG + +A+A+F M +AG+R + T+V LS+
Sbjct: 237 MEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSS 296
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA VGALE GV + Y +GTALVDMYAKCG++E A+ VFG+ K+ +W
Sbjct: 297 CAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNEASW 356
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
A+I GLA +GR AIQ F+ M G +PD F+ +L+AC ++G ++ F S+
Sbjct: 357 NALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRLFSSLT 416
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ I P ++H++ +V+LL+R G ++ A +FI KMP D V+ GAL ACR K+ ++
Sbjct: 417 PVFKIIPKIEHYSCIVDLLARAGHLEAAWDFIEKMPGKVDAVMLGALLAACRKCKNAEVG 476
Query: 485 K 485
+
Sbjct: 477 E 477
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 229/469 (48%), Gaps = 35/469 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N++T +IS + Q+ I L ++ + L+ +ID A IF
Sbjct: 239 NSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF 298
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D KNL ++N ++ + ++ ML+ RP+R+T + + L +S
Sbjct: 299 DECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVS 358
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ H ++++G+E V + +MY++ GK A +V
Sbjct: 359 CGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV-------------------- 398
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
F M K SW SLI GF+R GD++ A ++F MP+ +VSW
Sbjct: 399 ---------------FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNT 443
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI Q ++A+ +F M G+ A+ T+V SAC +GAL+ +H YI D
Sbjct: 444 MIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKD 503
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+GTALVDM+A+CG+ ++A VF + ++D+ WTA I +A+ G AI+ F
Sbjct: 504 IHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFD 563
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M+ G +PDG VF+A+LTA + G V+ + F SM+ Y I P H+ +V+LL R
Sbjct: 564 EMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRA 623
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
G + +AL+ IN M P+ VIWG+L ACR HK+ IA A + L+
Sbjct: 624 GLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD 672
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 226/510 (44%), Gaps = 98/510 (19%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSAS---LHKSIDYALSIFDHFTPKN-----LHIF 97
+L+Q+H+QI + L T LISS + +S++YA + F N ++F
Sbjct: 48 ELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMF 107
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
+ LIRG + I F ++ + P+ T+PFV + + L+ G +H IVK
Sbjct: 108 SSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVK 167
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
G E D FV L Y + G+ +VFD+ E+N V+ W LI G +K G ++
Sbjct: 168 MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERN----VVSWTSLIGGYAKRGCYKE 223
Query: 218 AVELF------GMMPK--------------------KNVASWV-------------SLID 238
AV LF G+ P + V + + +L+D
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+M+ G + KA ++F++ +K +V + +++ + + G A + LA+ +ML G R + T
Sbjct: 284 MYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRIT 343
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKC------------ 344
++SA+SAC+++ + G H Y+ N GL+G + A+++MY KC
Sbjct: 344 MLSAVSACSELDDVSCGKWCHGYVLRN--GLEGWDNVCNAIINMYMKCGKQEMACRVFDR 401
Query: 345 -------------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
G++E+A +F + DL++W MI L +++AI+ F
Sbjct: 402 MLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF 461
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR-----FDYFIEPSVKHHTVVV 440
+ M G D + + +AC Y G + LA ++ FD + T +V
Sbjct: 462 RVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHL------GTALV 515
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGA 470
++ +R G A+ NKM + D W A
Sbjct: 516 DMFARCGDPQSAMQVFNKMVKR-DVSAWTA 544
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 221/451 (49%), Gaps = 41/451 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
KQL++ HAQ++ L S ++L++ S LH S+ +A +F + I N +I+
Sbjct: 19 KQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIK 78
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
+ I + ML + P+ T P+V K+ A L LG H VK G +
Sbjct: 79 AFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWF 138
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D FV L MY S G +R A +F
Sbjct: 139 DIFVGNTLIAMY-----------------------------------SSFGNVRAARCIF 163
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP SW +I G+ + GD++ A LF++ P K W ++I+G+ QN ++ L
Sbjct: 164 DEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQ 223
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
MF M G+ ++ +VS L ACA +GA+E GV VH Y+ L + T L+DMYA
Sbjct: 224 MFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYA 283
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+++ A +F ++D + W AMI G+A++G + A++ F +M +G +PD F+A
Sbjct: 284 KCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIA 343
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE- 461
I TAC YSG A+ +SM Y +EP +H+ +V+LL R G + +A I KMP
Sbjct: 344 IFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNS 403
Query: 462 ---TPDFVIWGALFCACRTHKDTKIAKIALQ 489
T + W AL AC +H T++A+ A Q
Sbjct: 404 SSPTEQAIAWRALLSACCSHGQTEVAEDAAQ 434
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/459 (30%), Positives = 233/459 (50%), Gaps = 43/459 (9%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + +IS I A +FD K++ +N +I G + F F M
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
++P+ +T + ++ + L LG+ +H ++ G+ D V DMY ++G A
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDG- 239
VF + P +N ++ WN +I+GC + G + ++ +LF + + ++ + VSL+ G
Sbjct: 287 WVFYKMPTRN----LVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGC 342
Query: 240 ---------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G LK+A +F +M ++ V++WTA
Sbjct: 343 SQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTA 402
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ G +QNG AE AL +F QM + G+ AN T VS + +CA +G+L+ G +H ++
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG 462
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F TALVDMYAKCG I A +F + KD++ W +MI G +HG QA+ +
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
KM+ G +P+ T FL++L+AC +S V+ ++ F+SM D+ I P KH+ +V+LLSR
Sbjct: 523 HKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSR 582
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
G+ ++A I KMP P + AL CRTHK+ +
Sbjct: 583 AGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLG 621
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 230/482 (47%), Gaps = 47/482 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH-FTPKNLH 95
L SS + ++ HAQII ++L + T+L+ + S +S++ A +FD F PK L
Sbjct: 38 LRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGL- 96
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+ N ++ G ++ ++ + F M ++ + + F K+ AS +G +
Sbjct: 97 LCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSA 156
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V+ G+E + FV + V+ GK A +VFD P K+ V+ WN +I G + G
Sbjct: 157 VEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKD----VVCWNSIIGGYVQAGCF 212
Query: 216 RKAVELF------GMMPK---------------------------------KNVASWVSL 236
A +LF G+ P ++ S
Sbjct: 213 DVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSF 272
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+D + + GD++ A +F +MP + +VSW AMI+G +NG ++ +F +++ + +
Sbjct: 273 VDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDL 332
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+VS L C++ +L G +H + F + TA+VD+Y+KCG+++ A+ VF
Sbjct: 333 TTIVSLLQGCSQTASLATGKILHG-CAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNR 391
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
K+++++TWTAM+ GLA +G E A++ F +M G + F++++ +C + G +K
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ + F + + T +V++ ++ G+++ A + + D V+W ++
Sbjct: 452 RSIHGHL-FRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYG 510
Query: 477 TH 478
H
Sbjct: 511 MH 512
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 24/353 (6%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL----FASSRI-TTQLISSASLHKS 78
+ S T I+SL+ + T L ILH F S+ I +T ++ S S
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLA---TGKILHGCAIRSFESNLILSTAIVDLYSKCGS 381
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +F+ +N+ + ++ GLA+N H + + F M + N +T+ + S
Sbjct: 382 LKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHS 441
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L L GR +H + + G +D L DMY + GK A ++F + S+
Sbjct: 442 CAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFS---HGSISKD 498
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
V+LWN +I G G+ +AV ++ M K N +++SL+ +++ LF
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFN 558
Query: 255 QMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + + +++ S+ G E+A A+ +M + + + LS C
Sbjct: 559 SMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM---PFQPGTAVLEALLSGCRTH 615
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ G++ + + D + I L ++YA+ + + G + + L
Sbjct: 616 KNINLGIQTSDKLLALD-AMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGL 667
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/404 (33%), Positives = 216/404 (53%), Gaps = 35/404 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD K++ ++ LI +N ++ I FV M ++ V + + + A+
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L ++++G+ +H L +K G E ++ L MY + G A K+FDE
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE------------ 436
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
YL ++ SW S+I G+++ + A +F+ MPEK V
Sbjct: 437 -----------AYLL------------DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 473
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW++MI+G++QN ++ LA+F +M +G + ++ T+VS +SACA++ ALE G VH Y
Sbjct: 474 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 533
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N + +GT L+DMY KCG +E A VF EK + TW A+I GLA++G E +
Sbjct: 534 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 593
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F M P+ F+ +L AC + G V + F SM D+ I+P+VKH+ +V+
Sbjct: 594 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 653
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
LL R G++ +A +N+MP TPD WGAL AC+ H D+++ +
Sbjct: 654 LLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGR 697
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 169/347 (48%), Gaps = 56/347 (16%)
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRL-----TYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+ ++ Q+ HF F L S+ N L TYP + ++ + + +H ++K G
Sbjct: 184 SRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLG 243
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ D +VR L + + A +VF+E+ + WN ++ G +IG + +A
Sbjct: 244 FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS----WNSILAGYIEIGNVEEAK 299
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
++ MP++++ + S+I F +G + +A +LF++M EK +V+W+A+I F QN E+
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT---- 335
A+ F M GV ++ VSALSACA + + G +H+ L IGT
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS--------LSLKIGTESYI 411
Query: 336 ----ALVDMYAKCGNIEAASLVFGET-------------------------------KEK 360
AL+ MY+KCG+I A +F E EK
Sbjct: 412 NLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK 471
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
D+++W++MI G A + +++ + F++M SG +PD T +++++AC
Sbjct: 472 DVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +IFD K++ ++ +I G A+N F ++ F M +P+ T V +
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L+ L G+ +H I ++G+ + + L DMY++ G A +VF EK S
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST- 576
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK------------------------------- 227
WN LI G + G + ++++F M K
Sbjct: 577 ---WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 633
Query: 228 ---------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
NV + ++D R G L++A EL +MP V +W A++ ++G++
Sbjct: 634 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 693
Query: 278 E 278
E
Sbjct: 694 E 694
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 7/187 (3%)
Query: 31 ETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
ET ++S+I + L Q +HA I + L + + T LI ++ AL +F
Sbjct: 508 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 567
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
K + +N LI GLA N +S + F M + V PN +T+ V + + L+
Sbjct: 568 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDE 627
Query: 148 GR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ + +I ++ + + D+ + GK + A ++ + P + V W L+
Sbjct: 628 GQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MTPDVATWGALL 684
Query: 207 NGCSKIG 213
C K G
Sbjct: 685 GACKKHG 691
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 218/414 (52%), Gaps = 9/414 (2%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFV 135
I +A +F+ +N+ + +I G + ++ F+ M + + V P LT F
Sbjct: 206 IGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMF- 264
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
++ + G +H L+ + G E+D F+ + MY + A K+FD K+
Sbjct: 265 -EACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKD- 322
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V+ WN LI G + + + LF +K+V SW ++I GF KG + K+ ELF
Sbjct: 323 ---VVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRM 379
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP++ ++WTA+I+GF NGE E+A+ F +ML VR N T+ S LSA A + L G
Sbjct: 380 MPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQG 439
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+++H + +I +LV MY KCGN+ +F +++++ +MI G A +
Sbjct: 440 LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQN 499
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E+A++ F KM+ G +P+ FL +L+AC + G ++ N+F SM+ Y IEP H
Sbjct: 500 GFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHH 559
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +V+LL R G +D A++ I MP P +WGAL A R H +AK+A Q
Sbjct: 560 YACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQ 613
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 193/437 (44%), Gaps = 66/437 (15%)
Query: 24 KPSNNITETHIISLIHSSNS-----TKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
KP+ + + H+ S ++SSN+ TK L H+QI H +
Sbjct: 4 KPTTLLLQKHL-SRLNSSNTQGNRTTKFLVHCHSQITKH----------------GRNGD 46
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A SIF KN + ++ EN H F M P R T + +
Sbjct: 47 LKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM------PQRTTASYNAMI 100
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + G + E ++ + + G A +++ ETP + +
Sbjct: 101 TAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDP- 159
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ N LI+G K+G L +A +F M +++V SW S++DG+ +KG + A ELFE+MPE
Sbjct: 160 -VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPE 218
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI+G + G E +F +M G V+ N T+ AC++ G + G++
Sbjct: 219 RNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQ 278
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCG-------------------------------N 346
+H +S F +G A++ MY +
Sbjct: 279 MHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDE 338
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+E ++F +T++KD+++WT MI G + G+ ++I+ F+ M + D + A+++
Sbjct: 339 VEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMM----PKQDDIAWTAVISG 394
Query: 407 CWYSGQVKLALNFFDSM 423
+G+ + A+ +F M
Sbjct: 395 FVGNGEYEEAIYWFIEM 411
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ S + ++ +F ++ + +I G N ++ I F+ MLR VR
Sbjct: 358 TTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVR 417
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN LT V + A L+ L+ G +H L+VK G+E+D ++ L MY + G ++
Sbjct: 418 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 477
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMR 242
F S +++ +N +I G ++ G+ +A+ELF M K N +++ ++
Sbjct: 478 FTSI----NSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTH 533
Query: 243 KGDLKKAGELFEQM 256
G L++ F+ M
Sbjct: 534 VGLLEQGWNYFKSM 547
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T + ++S + Q QIH ++ + I L+S + ++ IF
Sbjct: 419 NPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIF 478
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
N+ FN +I G A+N + + F ML +PN +T+ V + + LL
Sbjct: 479 TSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLE 538
Query: 147 LG 148
G
Sbjct: 539 QG 540
>gi|218186878|gb|EEC69305.1| hypothetical protein OsI_38371 [Oryza sativa Indica Group]
Length = 560
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 228/454 (50%), Gaps = 23/454 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLA 105
RQ+HA +++ L +R L++S+S S +A ++FD N++++ I A
Sbjct: 28 RQLHAHLLIRGLPLPARAAVALVASSS---SPRHARAVFDSVPAASANVYLWTATISAYA 84
Query: 106 ENSHFQSCISH-----------FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
H S SH F ML RPN T V K + + + G +H
Sbjct: 85 R--HTSSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAF 142
Query: 155 IVKSGVEYDAF-VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ K+G+ + V L D+Y +G A +VFDE P KN V++ N ++ + G
Sbjct: 143 LAKAGLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKN----VVVGNTMVACNVRAG 198
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ A E+F M +++ SW +L+ G++ GD ELF++M + V SW MI S+
Sbjct: 199 DMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSE 258
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
G + +F +M G + T+ +SACA++G+L +VH + + + +
Sbjct: 259 EGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHV 318
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+L+DMYAKCG I A +F ET KD +++ MI A HG A+ F M+ SG
Sbjct: 319 QNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGL 378
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
+PD FL +L+AC ++G V+ N+F+ M+ Y ++ S H+ VV+L R G +++A
Sbjct: 379 QPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAH 438
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
F+ MP P +WGAL ACR H + +IA
Sbjct: 439 CFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIA 472
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 251/523 (47%), Gaps = 58/523 (11%)
Query: 16 TTNIKSSHKPS----NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
T NI SS S NN+T ++ + S + +H ++ A + + T L+
Sbjct: 30 TLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVD 89
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S + A +FD +++ +N ++ + S +S M L P T
Sbjct: 90 MYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTAST 149
Query: 132 YPFVSKSVASLSLLS---LGRGLHCLIVKSGVEYDAFVRVHLAD----MYVQLGKTRGAF 184
+ + ++L LG+ +HC ++K G+ Y + V LA+ MYVQ A
Sbjct: 150 FVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVY---LEVSLANSLMGMYVQFCLMDEAR 206
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG- 239
KVFD EK S++ W +I G KIG+ +A LF M ++V +++LI G
Sbjct: 207 KVFDLMDEK----SIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGC 262
Query: 240 ----------------------------------FMRKGDLKKAGELFEQMPEKGVVSWT 265
+ + G+L A +F+ + EK ++SWT
Sbjct: 263 IQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWT 322
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+MI G+ G +AL +F +M+ +R N T+ + +SACA +G+L G + YI N
Sbjct: 323 SMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLN 382
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ T+L+ MY+KCG+I A VF +KDL WT+MI AIHG +AI F
Sbjct: 383 GLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLF 442
Query: 386 KKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
KM + G PD V+ ++ AC +SG V+ L +F SM+ D+ I P+V+H T +++LL
Sbjct: 443 HKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLG 502
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
RVGQ+D ALN I MP +WG L ACR H + ++ ++A
Sbjct: 503 RVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELA 545
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 211/464 (45%), Gaps = 55/464 (11%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
++L+ +N++IR N F ++ + M V N LTYP + K+ A+L + G L
Sbjct: 9 RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H ++K G + D FV+ L DMY + A +VFDE P++ SV+ WN +++ S+
Sbjct: 69 HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQR----SVVSWNAMVSAYSR 124
Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGD---------------------- 245
+ +A+ L M + +++VS++ G+
Sbjct: 125 RSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYL 184
Query: 246 -----------------LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
+ +A ++F+ M EK ++SWT MI G+ + G A +A +F+QM
Sbjct: 185 EVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQ 244
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI---SCNDFGLKGAIGTALVDMYAKCG 345
V + ++ +S C +V L VH+ + CN+ K + L+ MYAKCG
Sbjct: 245 HQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNE---KDPVENLLITMYAKCG 301
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
N+ +A +F EK +L+WT+MI G G +A+ F++M+ + P+G +++
Sbjct: 302 NLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVS 361
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC G + + + + F +E + T ++++ S+ G + KA ++ + D
Sbjct: 362 ACADLGSLSIGQEIEEYI-FLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD-KDL 419
Query: 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
+W ++ + H A + +P A+ Y F+
Sbjct: 420 TVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFL 463
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/553 (26%), Positives = 277/553 (50%), Gaps = 63/553 (11%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT ++++ + K + +H+ I+ + + T L+ + S +F
Sbjct: 344 NRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVF 403
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ ++L +N +I GLAE +++ + M R + PN++TY + + + + L
Sbjct: 404 EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALH 463
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H +VK G +D V+ L MY + G + A +F++ K+ ++ W +I
Sbjct: 464 WGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKD----IISWTAMI 519
Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVS--------------------------- 235
G +K G +A+ +F M K N ++ S
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579
Query: 236 --------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
L++ + G +K A ++F++M ++ +V++ AMI G++ + ++AL +F ++
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 639
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ G++ + T ++ L+ACA G+LE +H+ + + + ++G ALV YAKCG+
Sbjct: 640 QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSF 699
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A LVF + ++++++W A+I G A HGR + +Q F++M G +PD F+++L+AC
Sbjct: 700 SDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSAC 759
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G ++ +F SM D+ I P+++H+ +V+LL R GQ+D+ I MP + I
Sbjct: 760 SHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRI 819
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSL---NLSIPQAMSY-------------CQTFMQQ 511
WGAL ACR H + +A+ A +SS L N ++ A+S+ + M+Q
Sbjct: 820 WGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQ 879
Query: 512 KG----DGRTWRE 520
+G GR+W E
Sbjct: 880 RGVTKEPGRSWIE 892
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/489 (27%), Positives = 228/489 (46%), Gaps = 47/489 (9%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++S S ++ + R+IH + + L + +++ + SI A +FD
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K++ + ++I G A+ H + F M + V PNR+TY V + + + L G+
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK 365
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H I+ +G E D V L MY + G + +VF EK + ++ WN +I G
Sbjct: 366 TVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVF----EKLVNRDLIAWNTMIGGL 421
Query: 210 SKIGYLRKAVELF------GMMPKK-------------NVASWVSLI------DGFM--- 241
++ G +A E++ GMMP K W I DGFM
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481
Query: 242 -----------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
R G +K A LF +M K ++SWTAMI G +++G +ALA+F M A
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQA 541
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G++ N T S L+AC+ AL+ G R+H + + LV+MY+ CG+++ A
Sbjct: 542 GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDA 601
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF ++D++ + AMI G A H ++A++ F ++ G +PD ++ +L AC S
Sbjct: 602 RQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 661
Query: 411 GQVKLALNFFDSMRFD-YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
G ++ A + D Y + S+ + +V+ ++ G AL +KM + + + W
Sbjct: 662 GSLEWAKEIHSLVLKDGYLSDTSLGN--ALVSTYAKCGSFSDALLVFDKMMKR-NVISWN 718
Query: 470 ALFCACRTH 478
A+ C H
Sbjct: 719 AIIGGCAQH 727
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 210/472 (44%), Gaps = 47/472 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLA 105
R++H II H LI+ SI+ A +++ T + +H +N ++ G
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYV 220
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + + + M + + R T + S S S L GR +H +K+ + +D
Sbjct: 221 QYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN 280
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V + +MY + G A +VFD K +++SV+ W ++I G + G+ A E+F
Sbjct: 281 VANCILNMYAKCGSIHEAREVFD----KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKM 336
Query: 223 ---GMMPKK---------------------------------NVASWVSLIDGFMRKGDL 246
G++P + ++A +L+ + + G
Sbjct: 337 QQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSY 396
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
K ++FE++ + +++W MI G ++ G E+A ++ QM G+ N T V L+AC
Sbjct: 397 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
AL G +H+ + + F ++ AL+ MYA+CG+I+ A L+F + KD+++WT
Sbjct: 457 VNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWT 516
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI GLA G +A+ F+ M +G +P+ + +IL AC + + +
Sbjct: 517 AMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV-IE 575
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ +VN+ S G V A ++M + D V + A+ H
Sbjct: 576 AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR-DIVAYNAMIGGYAAH 626
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWV-------------SLIDGFMRKGDLKKAGEL 252
+N C + L++ +E+ ++ + V + +LI+ +++ G +++A ++
Sbjct: 139 VNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQV 198
Query: 253 FEQM--PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+ ++ E+ V SW AM+ G+ Q G E+AL + +M G+ T + LS+C
Sbjct: 199 WNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPS 258
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
ALE G +H + +++MYAKCG+I A VF + + K +++WT +I
Sbjct: 259 ALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
G A G E A + F+KM G P+ ++ +L A +SG L
Sbjct: 319 GYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA--FSGPAAL 361
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 156/349 (44%), Gaps = 17/349 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
A+A +++ + N +T T I++ S + R+IH Q+I L + + L++
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVN 590
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S+ S+ A +FD T +++ +N +I G A ++ + + F + ++P+++T
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 650
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
Y + + A+ L + +H L++K G D + L Y + G A VFD+
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM 710
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLK 247
++N V+ WN +I GC++ G + ++LF M K ++ ++VSL+ G L+
Sbjct: 711 KRN----VISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766
Query: 248 KAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+ F M + + M++ + G+ ++ A+ M +AN +
Sbjct: 767 EGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM---PFQANTRIWGAL 823
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
L AC G + R D A+ AL MYA G ++A+
Sbjct: 824 LGACRIHGNVPVAERAAESSLKLDPD-NAAVYVALSHMYAAAGMWDSAA 871
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 6/194 (3%)
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
++A+ + + G R N + L C +V L AG VH +I + L AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182
Query: 338 VDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
++MY +CG+IE A V+ + E+ + +W AM+ G +G E+A++ ++M G
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242
Query: 396 DGTVFLAILTACWYSGQVKLALNF-FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
+ +L++C ++ ++M+ + +V + ++N+ ++ G + +A
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEARE 300
Query: 455 FINKMPETPDFVIW 468
+KM ET V W
Sbjct: 301 VFDKM-ETKSVVSW 313
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 225/459 (49%), Gaps = 39/459 (8%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N +I+ N + +V + + + T+P + K+ S S +G LH +
Sbjct: 18 WNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLALHGQTI 77
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN------------- 203
K+G FV+ L +MY A KVF++ P K+ V+ WN
Sbjct: 78 KAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKD----VVAWNSILDAYASTDQMD 133
Query: 204 ------------------VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
++I+G S IG A +F M +K++ SW S+I +++ D
Sbjct: 134 DALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGED 193
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+++A +LF +MP K +++W M+ GF QN + L +F +M + TV LSA
Sbjct: 194 MERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSA 253
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA G+L+ G VH Y N + TAL+DMYAKCG+I+ VF +++ KD+ W
Sbjct: 254 CAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCW 313
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
A+I GLA+HG A+ F KM + T PD F+ +L+AC +SG V+ F SM+
Sbjct: 314 NALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQK 373
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++ I P ++H+ +V+LLSR +D AL I MP P I GAL AC H+D ++ +
Sbjct: 374 EFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQDLEVGE 433
Query: 486 --IALQSSCSLNLSIPQAMSYCQTFMQ--QKGDGRTWRE 520
+ L SS LS + M + + Q + WRE
Sbjct: 434 RVVKLVSSRGNYLSDGELMMFSNLYASCGQWEEANKWRE 472
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 152/357 (42%), Gaps = 18/357 (5%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISL-IHSSNSTKQLRQIHAQIILHNLFASSR 64
+N + A A T + + K N++ + S I S + + + A+ I N+
Sbjct: 119 WNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDI 178
Query: 65 IT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
++ +IS+ + ++ A +F KN+ +N +++G +N + + F M
Sbjct: 179 VSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTT 238
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+ P+ LT V + A L G +H + +G+ V L DMY + G +
Sbjct: 239 NCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQG 298
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG 239
+VF K++ + + WN LI+G + G+ A+ +F M K + +++ L+
Sbjct: 299 LQVF----YKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSA 354
Query: 240 FMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G +++ +LF M ++ +S + M++ S+ + AL + M +
Sbjct: 355 CSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTM---PFKP 411
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ + + LSAC LE G RV +S L ++YA CG E A+
Sbjct: 412 GEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELMMFSNLYASCGQWEEAN 468
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 11/191 (5%)
Query: 1 MKGHVFNRLTTAIAPTTN-IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+KG + N+L + + +K+++ + +T T ++S S S K+ ++H I + L
Sbjct: 216 VKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGL 275
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+S +TT LI + SI L +F K+++ +N LI GLA + H + ++ F
Sbjct: 276 ASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNK 335
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGR----------GLHCLIVKSGVEYDAFVRVH 169
M + RP+ +T+ + + + L+ G G+ I G D R
Sbjct: 336 MRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRAR 395
Query: 170 LADMYVQLGKT 180
D +QL KT
Sbjct: 396 HLDCALQLIKT 406
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 91/216 (42%), Gaps = 10/216 (4%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+P + W +I NG+A +A+ + + + G A++FT L A + G
Sbjct: 10 LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ +H F + TAL++MY + A VF + KD++ W +++ A
Sbjct: 70 LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
+ + A++ F M D + F +++ G+ A + FD+M E +
Sbjct: 130 DQMDDALKVFNSMPLK----DLSSFNIMISGYSSIGKTLSARSIFDNMA-----EKDIVS 180
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+++ + +++A + +MP + + W +
Sbjct: 181 WNSMISAYIQGEDMERACDLFREMP-AKNIITWNTM 215
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 218/423 (51%), Gaps = 50/423 (11%)
Query: 115 SHFVFM---LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
SHF+F+ L ++ P L + AS ++ +H +K G E FV L
Sbjct: 11 SHFLFIIVALSSTIAPAALVVALTTNINAS----TISSSIHVHALKLGFESYLFVSNALI 66
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV- 230
MY G+ A K+FD +++ ++ WN LI G S+ ++ + LF M N+
Sbjct: 67 HMYAMCGQLGFAQKMFDGMLDRD----LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIK 122
Query: 231 ----------------ASWV----------------------SLIDGFMRKGDLKKAGEL 252
W +LID + R G+L A +L
Sbjct: 123 ADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKL 182
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F+ MP++ V+SWT+MI G+SQ + A+ +F +M+ A V+ + TV S LSACA +G L
Sbjct: 183 FDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKL 242
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+ G VH+YI + +G +L+DMY KCG +E A VF K+KD ++WT++I GL
Sbjct: 243 DVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGL 302
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A++G A+ F +M+ G +P F+ IL AC ++G V L +F+SM + + P+
Sbjct: 303 AVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPA 362
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
+KH+ VV+LLSR G +DKA FI KMP PD V+W L AC+ H + +A+IA +
Sbjct: 363 MKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLL 422
Query: 493 SLN 495
L+
Sbjct: 423 ELD 425
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 173/385 (44%), Gaps = 47/385 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+++L + N++ IH + + ++ LI ++ + +A +FD ++
Sbjct: 30 VVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 89
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +N LI G ++ + ++ + F M +++ + +T + + + L +
Sbjct: 90 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVK 149
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I ++ +E D ++ L DMY +LG A K+FD P+++ V+ W +I G S+
Sbjct: 150 YIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRD----VISWTSMITGYSQAS 205
Query: 214 YLRKAVELFGMM------PKK-NVAS--------------WV------------------ 234
AV+LF M P K VAS W
Sbjct: 206 QFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGN 265
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SLID + + G ++KA E+F +M +K VSWT++I+G + NG A AL +F QML GV+
Sbjct: 266 SLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQP 325
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-S 351
T V L ACA G + G+ + + GL A+ +VD+ ++ GNI+ A
Sbjct: 326 THGTFVGILLACAHAGLVNKGLEYFESME-SVHGLVPAMKHYGCVVDLLSRSGNIDKAYE 384
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHG 376
+ D++ W ++ +HG
Sbjct: 385 FIKKMPIVPDVVVWRILLSACKLHG 409
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 103/269 (38%), Gaps = 40/269 (14%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+H I H + A + LI ++ AL +F K+ + +I GLA N
Sbjct: 248 VHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGF 307
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRV 168
S + F MLR V+P T+ + + A H +V G+EY ++ V
Sbjct: 308 ANSALDLFSQMLREGVQPTHGTFVGILLACA-----------HAGLVNKGLEYFESMESV 356
Query: 169 H-----------LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL-- 215
H + D+ + G A++ + P V++W +L++ C G +
Sbjct: 357 HGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMP---IVPDVVVWRILLSACKLHGNVVL 413
Query: 216 -RKAVELFGMMPKKNVASWVSLID---GFMRKGDLKKAGELFEQMP-EKGVVSWTAMING 270
A + + + ++V L + G R D K EL E +K S + ++G
Sbjct: 414 AEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDG 473
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTV 299
N E L L R NDFTV
Sbjct: 474 MVSNYSQEPGL------LQVETR-NDFTV 495
>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01030, mitochondrial; Flags: Precursor
gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 247/474 (52%), Gaps = 21/474 (4%)
Query: 27 NNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N++ + + +++S N +L R++ + NL + + I +SS + +D A+ +
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI----LSSYTKLGYVDDAIGL 177
Query: 86 FDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
D ++ +N L+ G A + I+ M ++P+ + + ++VA
Sbjct: 178 LDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAE 237
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L LG+ +H I+++ + YD +V L DMY++ G A VFD KN ++
Sbjct: 238 PGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKN----IVA 293
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP 257
WN L++G S L+ A L M K+ + +W SL G+ G +KA ++ +M
Sbjct: 294 WNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMK 353
Query: 258 EKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
EKGV VSWTA+ +G S+NG AL +F +M + GV N T+ + L + L
Sbjct: 354 EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLH 413
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+G VH + + + TALVDMY K G++++A +F K K L +W M+ G A
Sbjct: 414 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYA 473
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+ GR E+ I F M+ +G EPD F ++L+ C SG V+ +FD MR Y I P++
Sbjct: 474 MFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTI 533
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+H + +V+LL R G +D+A +FI M PD IWGA +C+ H+D ++A+IA
Sbjct: 534 EHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIA 587
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 182/417 (43%), Gaps = 41/417 (9%)
Query: 50 IHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH +I L S +R+ + + S+ +A +FD ++ +N ++ +
Sbjct: 9 IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG 68
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+++ + F M + T + + ++ + GR +H +++ G+E + +
Sbjct: 69 NWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCN 128
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
L MY + GK + KVF+ ++N S WN +++ +K+GY+ A+ L M
Sbjct: 129 SLIVMYSRNGKLELSRKVFNSMKDRNLSS----WNSILSSYTKLGYVDDAIGLLDEMEIC 184
Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
K ++ +W SL+ G+ K G ++ A+A+
Sbjct: 185 GLKPDIVTWNSLLSGYASK-------------------------------GLSKDAIAVL 213
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M AG++ + ++ S L A A+ G L+ G +H YI N + T L+DMY K
Sbjct: 214 KRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKT 273
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G + A +VF K+++ W +++ GL+ + A +M G +PD + ++
Sbjct: 274 GYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLA 333
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+ G+ + AL+ M+ + + P+V T + + S+ G AL KM E
Sbjct: 334 SGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQE 389
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 128/276 (46%), Gaps = 27/276 (9%)
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
C +G+ K LF MPK++ +W ++ +R G+ +KA ELF +M G ++ + +
Sbjct: 36 CVSLGFANK---LFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTM 92
Query: 269 NGFSQNGEAEKALAMFFQM----LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
Q ++ A Q+ L G+ +N S + ++ G LE +V N S
Sbjct: 93 VKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFN--SM 150
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQ 380
D L +++ Y K G ++ A + E + + D++TW +++ G A G +
Sbjct: 151 KDRNLSSW--NSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL--ALNFF---DSMRFDYFIEPSVKH 435
AI K+M +G +P + ++L A G +KL A++ + + + +D ++E
Sbjct: 209 AIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVE----- 263
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
T ++++ + G + A + M + + V W +L
Sbjct: 264 -TTLIDMYIKTGYLPYA-RMVFDMMDAKNIVAWNSL 297
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 10/344 (2%)
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
VE + + + + Y+ A + FD +PE++ ++LWN ++ G ++G + +A
Sbjct: 52 VEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERD----IVLWNTMVAGYIEMGNMMEAR 107
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
LF MP ++V SW ++++G+ GD++ +F++M E+ V SW +I G++QNG +
Sbjct: 108 SLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSE 167
Query: 280 ALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNY---ISCNDFGLKGAIGT 335
L F +M+D G V ND T+ LSACAK+GA + G RVH Y + N + +
Sbjct: 168 VLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVN--VKN 225
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
AL+DMY KCG IE A VF K +DL++W MI GLA HG +A+ F +M G P
Sbjct: 226 ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISP 285
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
D F+ +L AC + G V+ L +F+SM D+ I P ++H VV+LLSR G + +A+ F
Sbjct: 286 DKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEF 345
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
INKMP D VIW L A + +K ++AL+ L P
Sbjct: 346 INKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNP 389
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLS 143
+FD +N+ +N LI+G A+N + F M+ SV PN T V + A L
Sbjct: 140 VFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLG 199
Query: 144 LLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
G+ +H G + D V+ L DMY + G A +VF K ++ W
Sbjct: 200 AFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI----KRRDLISW 255
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKK 228
N +ING + G+ +A++LF G+ P K
Sbjct: 256 NTMINGLAAHGHGTEALDLFHEMKNCGISPDK 287
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 22/237 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVA 140
A S+FD +++ +N ++ G A ++C F ML +V N L +
Sbjct: 106 ARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRV 165
Query: 141 SLSLLSLGRGLHCLIVKSGVEY--DAFVRVHLADMYVQLGKTRGAFKV--FDETPEKNKS 196
S L S R +V G + DA + + L+ +LG +V + E NK
Sbjct: 166 SEVLGSFKR-----MVDEGSVFPNDATLTLVLS-ACAKLGAFDFGKRVHKYGENLGYNKV 219
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+ V + N LI+ K G + A+E+F + ++++ SW ++I+G G +A +LF +M
Sbjct: 220 D-VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEM 278
Query: 257 PEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
G+ V++ ++ G E LA F M DF++ + C V
Sbjct: 279 KNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMF------TDFSITPQIEHCGCV 329
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 221/441 (50%), Gaps = 36/441 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P + L+ ++ KQL+Q+H +II L + +LI +S + + YA
Sbjct: 19 PRTRFGSEEALVLLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATL 78
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD ++ +NV+IR + + F ML P++ TYPFV + + S
Sbjct: 79 VFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSA 138
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L LG H L +K G D +V+ + ++Y + KVFD+
Sbjct: 139 LDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDK--------------- 183
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
M +NV +W ++I G + G L A ELFEQMP K VVSW
Sbjct: 184 --------------------MRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSW 223
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
TAMI+G+ ++ + +A +F +M VR N++T+VS + AC ++G+L+ G RVH++
Sbjct: 224 TAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFAL 283
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N F L+ +GTAL+DMY+KCG ++ A VF + + L TW MI L +HG ++A+
Sbjct: 284 KNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALS 343
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M + PD F+ +L+AC Y ++LA +F+ M Y I P ++H+T +V +
Sbjct: 344 LFDEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILEHYTCMVEIY 403
Query: 444 SRVGQVDKALNFINKMPETPD 464
+R ++D+ N M D
Sbjct: 404 TRAIELDENYTSGNTMEANHD 424
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 257/498 (51%), Gaps = 24/498 (4%)
Query: 3 GHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA 61
G+V N + AI ++++ + +T + +S + + +Q HA IL+ L
Sbjct: 248 GYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLEL 307
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ + T L++ I+YA IFD K++ +N+LI G + Q + ++M
Sbjct: 308 DNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQ----QGLVEDAIYMC 363
Query: 122 RLSVRPNRLTYPFVSKSV-----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
+L +R L Y V+ S A L G+ + C ++ +E D + DMY +
Sbjct: 364 QL-MRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAK 422
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVAS 232
G A KVFD T EK+ ++LWN L+ ++ G +A+ LF M NV +
Sbjct: 423 CGSIVDAKKVFDSTVEKD----LILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVIT 478
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQML 288
W +I +R G++ +A E+F QM G+ +SWT M+NG QNG +E+A+ +M
Sbjct: 479 WNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQ 538
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNI 347
D+G+R N F++ ALSA A + +L G +H YI N +I T+LVDMYAKCG+I
Sbjct: 539 DSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCGDI 598
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A VFG +L + AMI A++G ++AI ++ + G +PD F ++L+AC
Sbjct: 599 NKAERVFGSKLYSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSLLSAC 658
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G + A+ F M + ++P ++H+ ++V+LL+ G+ D+AL I +MP PD +
Sbjct: 659 NHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEMPYKPDARM 718
Query: 468 WGALFCACRTHKDTKIAK 485
+L +C +++ +
Sbjct: 719 IQSLVASCNKQHKSELVE 736
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 209/456 (45%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLF--ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 90 KQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 149
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H +VK+G+E F
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ L M
Sbjct: 210 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALLVGYVQNGMNEEAIRLLSDM 265
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K V SL++ + + G +
Sbjct: 266 RKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLI 325
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M +K VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 326 EYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAA 385
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + + + +DMYAKCG+I A VF T EKDL+ W
Sbjct: 386 ARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWN 445
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M P+ + I+ + +G+V A F M+
Sbjct: 446 TLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQ-S 504
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N + + G ++A+ F+ KM ++
Sbjct: 505 SGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDS 540
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M G
Sbjct: 210 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDG 269
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V + TV + LSA A +G + G + H N L +GT+L++ Y K G IE A
Sbjct: 270 VEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAE 329
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
++F +KD++TW +I G G E AI + M + D +++A +
Sbjct: 330 MIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTK 389
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+K + +E + ++ +++ ++ G + A + E D ++W L
Sbjct: 390 NLKFGKE-VQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEK-DLILWNTL 447
Query: 472 FCA 474
A
Sbjct: 448 LAA 450
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 259/504 (51%), Gaps = 47/504 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N + + +I++ + Q R+IH +I + + L+ + ++ A S+F
Sbjct: 110 NEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVF 169
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D ++ +N +I G + + + M + + PN T K+ A ++L
Sbjct: 170 DEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRE 229
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LGR LH ++K + D+F+ V L DMY + A VF PE++ ++ WN +I
Sbjct: 230 LGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERD----MIAWNAVI 285
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV------------------ASWV-------------- 234
+G S+ +A LF +M + + A+++
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345
Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
SLID + + G ++ A +FE+ P +V +T+++ ++Q+G+ E+AL ++ +M
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCG 345
D G++ + F S L+ACA + A E G +VH +I FG I G +LV+MYAKCG
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL--KFGFMSDIFAGNSLVNMYAKCG 463
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+IE AS F + +++W+AMI GLA HG ++A+Q FK+M+ G P+ +++L
Sbjct: 464 SIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLC 523
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G V A ++F+SM+ + IEP +H+ +++LL R G+++ A+ +NKMP +
Sbjct: 524 ACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANA 583
Query: 466 VIWGALFCACRTHKDTKIAKIALQ 489
++WGAL A R HK+ + + A +
Sbjct: 584 LVWGALLGAARIHKNIDLGEQAAE 607
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 124/491 (25%), Positives = 218/491 (44%), Gaps = 60/491 (12%)
Query: 36 SLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
S++ + TK L +Q+H +++ + + L+ + A S+FD +
Sbjct: 15 SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ +N L + +S F M+ +RPN + + L GR +H
Sbjct: 75 SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIH 134
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
++K G + DAF L DMY ++G A VFDE + + ++ WN +I GC
Sbjct: 135 GYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD----IVSWNAIIAGCVLH 190
Query: 213 GYLRKAVELF------GMMP-----------------------------KKNVAS----W 233
Y +A+EL GM P K ++ S
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG 250
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
V LID + + + A +F+ MPE+ +++W A+I+G SQN E E+A ++F M G+
Sbjct: 251 VGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG 310
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N T+ + L + A + A ++H + F + +L+D Y KCG++E A+ V
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-----W 408
F E+ DL+ +T+++ A G+ E+A++ + +M G +PD V ++L AC +
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAY 430
Query: 409 YSG-QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G QV + + F M D F S +VN+ ++ G ++ A +++P V
Sbjct: 431 EQGKQVHVHILKFGFMS-DIFAGNS------LVNMYAKCGSIEDASCAFSRIP-VRGIVS 482
Query: 468 WGALFCACRTH 478
W A+ H
Sbjct: 483 WSAMIGGLAQH 493
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 180/400 (45%), Gaps = 57/400 (14%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M L ++ N +P V K+ L LG+ +H ++V +G + D FV L +Y + G
Sbjct: 1 MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----- 228
A +FD P++ SV+ WN L + +AV LF G+ P +
Sbjct: 61 FGDARSLFDAIPDR----SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSS 116
Query: 229 --NVASWV--------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
NV + + +L+D + + G L+ A +F+++ +
Sbjct: 117 MINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD 176
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+VSW A+I G + +AL + +M +G+ N FT+ SAL ACA + E G ++H+
Sbjct: 177 IVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHS 236
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ D G +G L+DMY+KC +++ A LVF E+D++ W A+I G + + E+
Sbjct: 237 SLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEE 296
Query: 381 AIQYFKKMMYSGTEPDGTVF------LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
A F M G + T +A L A + Q+ AL+ FD ++ S
Sbjct: 297 AASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIH-ALSLKSGFEFDNYVVNS-- 353
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+++ + G V+ A + P D V++ +L A
Sbjct: 354 ----LIDTYGKCGHVEDATRVFEESP-IVDLVLFTSLVTA 388
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G++ N+F S L AC L G +VH + F + +LV +YAKCG A
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-- 408
+F ++ +++W A+ + +A+ F M+ SG P+ +++ C
Sbjct: 65 RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124
Query: 409 -YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
S Q + + + +D +V++ ++VG ++ A + +++ + PD V
Sbjct: 125 EDSVQGRKIHGYLIKLGYD----SDAFSANALVDMYAKVGILEDASSVFDEIAK-PDIVS 179
Query: 468 WGALFCACRTHK 479
W A+ C H+
Sbjct: 180 WNAIIAGCVLHE 191
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 236/466 (50%), Gaps = 73/466 (15%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + ++ + +L++IHA I+ +L SS + T+++ + + +YA +F
Sbjct: 59 EDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVA 118
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLL 145
N ++N +IR N + I+ + ML + P++ T+PFV KS A
Sbjct: 119 DPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA----- 173
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
GL C YD +VH
Sbjct: 174 ----GLMC--------YDLGKQVH------------------------------------ 185
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVS 263
G++ K FG K N SL++ +++ L A +FE+M E+ + S
Sbjct: 186 -------GHVFK----FGQ--KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFS 232
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WTA+++G+++ G AL F +M G+ ++ ++VS L CA++GALE G +H Y
Sbjct: 233 WTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYAD 292
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F + AL++MYAKCG+I+ +F + KE+D+++W+ MI GLA HGR +AI+
Sbjct: 293 KAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIE 352
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F++M + EP F+ +LTAC ++G + L +F+SM+ DY IEP V+H+ +VNLL
Sbjct: 353 LFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 412
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
G++D+AL + KMP PD IWG+L +CR+H + KIA IA++
Sbjct: 413 GLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAME 458
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 213/407 (52%), Gaps = 61/407 (14%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M L V N T+ F+ K + L GR +H I+K G FV+ L Y +
Sbjct: 1 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 60
Query: 180 TRG-AFKVFDETP---------------------------EKNKSESVLLWNVLINGCSK 211
G A++VF+E P +K +++ WN ++ G SK
Sbjct: 61 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 120
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
G + A +F MP +N SW S+I G++R GD++ A +F QMPEK VVSWTAMI+G+
Sbjct: 121 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 180
Query: 272 SQNG-------------------------------EAEKALAMFFQMLDAG-VRANDFTV 299
+ NG E ++AL +F ML G R + T+
Sbjct: 181 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 240
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
+S LSACA +G+LE G +++YI N L +G AL+DM+AKCG++E A VF +
Sbjct: 241 ISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSK 300
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
+ ++TWT M+ GLA++G+ +AI F KM GT+PD +F+A+L+AC + G V+
Sbjct: 301 RCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRV 360
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
FD M ++ I+P ++H+ +V+LL R G++++A +++ P P ++
Sbjct: 361 FDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA-KIMDQEPSNPSYL 406
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 138/337 (40%), Gaps = 73/337 (21%)
Query: 52 AQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110
AQ I + + + ++ T +IS + + + A +IF+H KN+ +N +I G N F
Sbjct: 158 AQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEF 217
Query: 111 QSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ F ML RP++ T + + A L L G+ ++ I K+ ++H
Sbjct: 218 DQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKN--------KLH 269
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
L S+ L N LI+ +K G + A E+F M K+
Sbjct: 270 L---------------------------SIPLGNALIDMFAKCGDVENAKEVFHHMSKRC 302
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+ +W +++ G G ++A LF++M +G
Sbjct: 303 IITWTTMVSGLAVNGKCREAINLFDKMCLEG----------------------------- 333
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
+ +D ++ LSAC G +E G RV + + +FG+K I +VD+ + G +
Sbjct: 334 --TKPDDVIFIAVLSACTHGGLVEEGKRVFDQM-VQEFGIKPRIEHYGCMVDLLGRAGKL 390
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
E A ++ E LT + + A GR+E + +
Sbjct: 391 EEAKIMDQEPSNPSYLTLVSNL--SASFGRWEDVLSF 425
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG-NIEAA 350
V AN FT L ALE G +H I FG + +L+ YA C N+ +A
Sbjct: 6 VEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSA 65
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF E E+D+++W +MI G + AI KM E + + +++ +
Sbjct: 66 YRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKM----PERNIVTWNSVVCGLSKA 121
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G ++LA + F+ M + V ++++ + R+G V A + +MPE V W A
Sbjct: 122 GNMELAHSVFEQMP----LRNEVSWNSMISGYV-RIGDVRAAQSIFYQMPEKT-VVSWTA 175
Query: 471 LFCACRTHKDTKIAK 485
+ T+ D K A+
Sbjct: 176 MISGYATNGDLKSAE 190
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 224/464 (48%), Gaps = 65/464 (14%)
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SL 144
F F + N+LIR A + + + F +LR P+R T+P + KS + L S
Sbjct: 35 FPLFPSSCTFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASF 94
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG---------------------- 182
G +H V+ G+ D FV L MY TR
Sbjct: 95 PRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLG 154
Query: 183 ----------AFKVFDETPEKNK-----------------------------SESVLLWN 203
A +VF++ P++N +V+ WN
Sbjct: 155 GYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWN 214
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
+I G ++ G L A ++F MP +N+ SW +++ G+ G++ A ELF++MPEK VVS
Sbjct: 215 SMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVS 274
Query: 264 WTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
WT MI+G++Q + L +F M ++ V N+ T+VS LSACA + ALE G H +I
Sbjct: 275 WTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFI 334
Query: 323 SCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ L +G AL+DMY+KCG + A +F +K++ W A+I GLA++G
Sbjct: 335 DKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRS 394
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+I F++M SG +P+G F+ +LTAC + G V F SM ++P KH+ +V
Sbjct: 395 SIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMV 454
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++L R G +++A I MP PD +I GAL ACR HK +A
Sbjct: 455 DMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVA 498
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 6/186 (3%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALS 84
N +T ++S + ++ R HA I H + S + LI S D A+
Sbjct: 307 NEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVK 366
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
IF KN+ +N LI GLA N +S I F M R +PN +T+ V + A L
Sbjct: 367 IFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGL 426
Query: 145 LSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ GR + GV+ +A + DM + G A ++ P V++
Sbjct: 427 VDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMP---MVPDVMILG 483
Query: 204 VLINGC 209
L+ C
Sbjct: 484 ALLGAC 489
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 38/369 (10%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
ML++ + P+ LTYPF++K+ + L LG +H ++KSG E D FV L MY G
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A KVFD T P KN+ SW S++DG
Sbjct: 61 IVYARKVFDGT-----------------------------------PVKNLVSWNSMVDG 85
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G L A LF+ MPE+ V SW+ +I+G++++G A+A+F +M +G +AN+ T+
Sbjct: 86 YAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTM 145
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ET 357
VS L ACA +GAL+ G +H Y+ N F L + T+L+DMYAKCG +E A VF
Sbjct: 146 VSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSL 205
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++ D+L W AMI GLA HG ++++ + +M +G +PD FL +L+AC + G VK A
Sbjct: 206 RKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQAS 265
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F+ + + + P +H+ +V++++R GQV +A F+ +MP P + GAL C
Sbjct: 266 YVFEGLGKN-GMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASMLGALLSGCMN 324
Query: 478 HKDTKIAKI 486
H +A++
Sbjct: 325 HGKLDLAEL 333
>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
Length = 674
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 211/414 (50%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H S+ A +FD +N+ + +IRG + + + F+ M R V+ N T
Sbjct: 208 HGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A SL G +H LI+ G E D F+ + MY + G A + FD +K+
Sbjct: 268 LDACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKD- 326
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + +A LF +M +K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 327 ---IVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQ 383
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K V+WTA+I+ F NG+ A+ F +M G + N LSA A + L G
Sbjct: 384 MPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG 443
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ H Y + A+ T+LV MYAKCG + A VF L+ +MI H
Sbjct: 444 RQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQH 503
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F KM +G +P+ FL ILT C +G V+ N+F+SMR Y +EP+ +H
Sbjct: 504 GFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEH 563
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G + +AL IN MP+ W AL A H + AKIA Q
Sbjct: 564 YTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQ 617
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ G ++G L A+ +F M ++V SW +++DG + G + +A +F+ MPE+ VV
Sbjct: 168 NALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVV 227
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWT+MI G+ + G L +F M GV+ N T+ AL ACA G+++HN I
Sbjct: 228 SWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLAREGIQIHNLI 287
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
F L +G +++ MY++ G + A F ++KD+++W ++I G H E+A
Sbjct: 288 ISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAH 347
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
FK M + D + +++ G ++ ++ F+ M
Sbjct: 348 VLFKLM----HQKDAVSWTSMVVGFANRGWMRESVELFEQM 384
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 24/319 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G+ R A +FD+ P ++ V+ W L+ + G L A +F MP++N SW
Sbjct: 48 YGRRGRLRDAQLLFDQMPSRD----VISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+ ++R + A LF +MP K VS+ A+I+G ++ +A ++ +M +
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEM---PWQ 160
Query: 294 ANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
D +AL A +VG L +RV ++ D +A+VD K G++ A
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDV----ISWSAMVDGLCKHGSVSEARR 216
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E+++++WT+MI G G + F M G + + T L AC +
Sbjct: 217 VFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASL 276
Query: 413 VKLAL---NFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ + N SM F D F+ S ++ + SR G + A + M + D V
Sbjct: 277 AREGIQIHNLIISMGFELDIFLGDS------IIIMYSRFGWMVDAKRAFDCM-QQKDIVS 329
Query: 468 WGALFCACRTHKDTKIAKI 486
W +L H + A +
Sbjct: 330 WNSLITGYVQHDMVEEAHV 348
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ + R+G L+ A LF+QMP + V+SWTA++ ++ G+ A +F M +
Sbjct: 43 ALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPS 102
Query: 295 ---------------------------NDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
N + + +S AK L V+ + +
Sbjct: 103 WNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP---W 159
Query: 328 GLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ +G+ AL+ Y + G + A VF +D+++W+AM+ GL HG +A + F
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219
Query: 387 KM 388
M
Sbjct: 220 AM 221
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 249/494 (50%), Gaps = 39/494 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T T ++S + S + R++HAQ + ++ + LI+ S ++ A ++F
Sbjct: 200 NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVF 259
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+++ +N L+ GL N H + F + ++ TY V K A+L L+
Sbjct: 260 RQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLA 319
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
L R LH ++K G D V + D Y + G+ AF +F P S++V+ W +I
Sbjct: 320 LARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP---GSQNVVSWTAMI 376
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV-----------------------------------A 231
GC + + A LF M + NV +
Sbjct: 377 GGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPS 436
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+L+ + + G+ ++A +F+ + K VV+W+AM++ +SQ G+ + A +F +M G
Sbjct: 437 VGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQG 496
Query: 292 VRANDFTVVSALSACAK-VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
++ N+FT+ SA+ ACA ++ G + H + +G+ALV MYA+ G+I++A
Sbjct: 497 MKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA 556
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+VF ++DL++W +MI G A HG ++A+ F++M G E DG FLA++ C ++
Sbjct: 557 RIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHA 616
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G VK +FDSM D+ I P+++H++ +V+L SR G++D+ +N I MP ++W
Sbjct: 617 GLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRT 676
Query: 471 LFCACRTHKDTKIA 484
L ACR HK+ ++
Sbjct: 677 LLGACRVHKNVELG 690
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 35/334 (10%)
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGA-----FKVFDETPEKNKSESVLLWNVLINGCSKIG 213
G D FV VH + G+ +GA KV P++ E + C K G
Sbjct: 82 GEALDHFVDVH------RCGRVQGAAVSRVLKVCGLIPDRVSGEQLHCL------CVKCG 129
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ R V +L+D +M+ G ++ +FE MP++ VV+WT+++ G+ Q
Sbjct: 130 FDRA-----------EVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQ 178
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA- 332
+A+FF+M GV N FT S LSA A GA++ G RVH FG +
Sbjct: 179 GRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH--AQSVKFGCRSTV 236
Query: 333 -IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ +L++MY+KCG +E A VF + + +D+++W ++ GL ++ +A+Q F S
Sbjct: 237 FVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRAS 296
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+ + + ++ C Q+ LA ++ + + +V T +++ S+ G++D
Sbjct: 297 MAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM--TAIMDAYSKCGELD 354
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
A N MP + + V W A+ C + D +A
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLA 388
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 184/440 (41%), Gaps = 49/440 (11%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F+ +N+ + L+ G + ++ F M V PN T+ V +VAS
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ LGR +H VK G FV L +MY + G A VF + ++ ++ WN
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRD----MVSWNT 272
Query: 205 LING-----------------------------------CSKIGYLRKAVELFGMMPKKN 229
L+ G C+ + L A +L + K
Sbjct: 273 LMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHG 332
Query: 230 VAS----WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMF 284
S +++D + + G+L A +F MP + VVSWTAMI G QN + A A+F
Sbjct: 333 FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALF 392
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M + V+ N+FT + L+A + + +H I ++ ++GTAL+ Y+K
Sbjct: 393 SRMREDNVKPNEFTYSTVLTASIPILLPQ----IHAQIIKTNYQHAPSVGTALLASYSKL 448
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
GN E A +F KD++ W+AM+ + G + A F KM G +P+ + +
Sbjct: 449 GNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAI 508
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
AC F ++ Y + ++ + +V + +R G +D A + + D
Sbjct: 509 DACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDR-D 567
Query: 465 FVIWGALFCACRTHKDTKIA 484
V W ++ H +K A
Sbjct: 568 LVSWNSMISGYAQHGYSKEA 587
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 42/270 (15%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP+ + I + + Q RQ HA I + + + + L++ + SID A
Sbjct: 498 KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSAR 557
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F+ T ++L +N +I G A++ + + + F M + + + T+
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATF----------- 606
Query: 144 LLSLGRGLHCLIVKSGVEY-DAFVRVH-----------LADMYVQLGKTRGAFKVFDETP 191
L + H +VK G +Y D+ V H + D+Y + GK + + P
Sbjct: 607 LAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMP 666
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVEL-------FGMMPKKNVASWVSLIDGFMRKG 244
++W L+ C + K VEL ++ + A++V L + + G
Sbjct: 667 ---FPAGAMVWRTLLGACR----VHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719
Query: 245 DLKKAGELFEQMPEKGV-----VSWTAMIN 269
K+ E+ + M K V SW + N
Sbjct: 720 RWKERDEVRKLMDSKKVKKEAGCSWIQIKN 749
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 218/414 (52%), Gaps = 9/414 (2%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFV 135
I +A +F+ +N+ + +I G + ++ F+ M + + V P LT F
Sbjct: 285 IGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMF- 343
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
++ + G +H L+ + G E+D F+ + MY + A K+FD K+
Sbjct: 344 -EACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKD- 401
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V+ WN LI G + + + LF +K+V SW ++I GF KG + K+ ELF
Sbjct: 402 ---VVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRM 458
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP++ ++WTA+I+GF NGE E+A+ F +ML VR N T+ S LSA A + L G
Sbjct: 459 MPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQG 518
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+++H + +I +LV MY KCGN+ +F +++++ +MI G A +
Sbjct: 519 LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQN 578
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E+A++ F KM+ G +P+ FL +L+AC + G ++ N+F SM+ Y IEP H
Sbjct: 579 GFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHH 638
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +V+LL R G +D A++ I MP P +WGAL A R H +AK+A Q
Sbjct: 639 YACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQ 692
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 193/437 (44%), Gaps = 66/437 (15%)
Query: 24 KPSNNITETHIISLIHSSNS-----TKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
KP+ + + H+ S ++SSN+ TK L H+QI H +
Sbjct: 83 KPTTLLLQKHL-SRLNSSNTQGNRTTKFLVHCHSQITKH----------------GRNGD 125
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A SIF KN + ++ EN H F M P R T + +
Sbjct: 126 LKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM------PQRTTASYNAMI 179
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + G + E ++ + + G A +++ ETP + +
Sbjct: 180 TAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDP- 238
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ N LI+G K+G L +A +F M +++V SW S++DG+ +KG + A ELFE+MPE
Sbjct: 239 -VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPE 297
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI+G + G E +F +M G V+ N T+ AC++ G + G++
Sbjct: 298 RNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQ 357
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCG-------------------------------N 346
+H +S F +G A++ MY +
Sbjct: 358 MHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDE 417
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+E ++F +T++KD+++WT MI G + G+ ++I+ F+ M + D + A+++
Sbjct: 418 VEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMM----PKQDDIAWTAVISG 473
Query: 407 CWYSGQVKLALNFFDSM 423
+G+ + A+ +F M
Sbjct: 474 FVGNGEYEEAIYWFIEM 490
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ S + ++ +F ++ + +I G N ++ I F+ MLR VR
Sbjct: 437 TTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVR 496
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN LT V + A L+ L+ G +H L+VK G+E+D ++ L MY + G ++
Sbjct: 497 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 556
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMR 242
F S +++ +N +I G ++ G+ +A+ELF M K N +++ ++
Sbjct: 557 FTSI----NSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTH 612
Query: 243 KGDLKKAGELFEQM 256
G L++ F+ M
Sbjct: 613 VGLLEQGWNYFKSM 626
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T + ++S + Q QIH ++ + I L+S + ++ IF
Sbjct: 498 NPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIF 557
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
N+ FN +I G A+N + + F ML +PN +T+ V + + LL
Sbjct: 558 TSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLE 617
Query: 147 LG 148
G
Sbjct: 618 QG 619
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/404 (33%), Positives = 216/404 (53%), Gaps = 35/404 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD K++ ++ LI +N ++ I FV M ++ V + + + A+
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L ++++G+ +H L +K G E ++ L MY + G A K+FDE
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE------------ 301
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
YL ++ SW S+I G+++ + A +F+ MPEK V
Sbjct: 302 -----------AYLL------------DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 338
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW++MI+G++QN ++ LA+F +M +G + ++ T+VS +SACA++ ALE G VH Y
Sbjct: 339 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 398
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N + +GT L+DMY KCG +E A VF EK + TW A+I GLA++G E +
Sbjct: 399 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 458
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F M P+ F+ +L AC + G V + F SM D+ I+P+VKH+ +V+
Sbjct: 459 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 518
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
LL R G++ +A +N+MP TPD WGAL AC+ H D+++ +
Sbjct: 519 LLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGR 562
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 190/392 (48%), Gaps = 63/392 (16%)
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+A+SR+ +H IDY IF+ N ++N++IR ++ Q+ HF F
Sbjct: 11 YAASRLIKFSTHFPFIH--IDYTRRIFNFIENTNCFMWNMMIR-----AYIQTNSPHFAF 63
Query: 120 MLRLSVRPNRL-----TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
L S+ N L TYP + ++ + + +H ++K G + D +VR L + +
Sbjct: 64 TLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF 123
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
A +VF+E+ + WN ++ G +IG + +A ++ MP++++ +
Sbjct: 124 SVCSNMTDACRVFNESSVLDSVS----WNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 179
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
S+I F +G + +A +LF++M EK +V+W+A+I F QN E+A+ F M GV
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV 239
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--------ALVDMYAKCGN 346
++ VSALSACA + + G +H+ L IGT AL+ MY+KCG+
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHS--------LSLKIGTESYINLQNALIYMYSKCGD 291
Query: 347 IEAASLVFGET-------------------------------KEKDLLTWTAMIWGLAIH 375
I A +F E EKD+++W++MI G A +
Sbjct: 292 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 351
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+++ + F++M SG +PD T +++++AC
Sbjct: 352 DLFDETLALFQEMQMSGFKPDETTLVSVISAC 383
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +IFD K++ ++ +I G A+N F ++ F M +P+ T V +
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L+ L G+ +H I ++G+ + + L DMY++ G A +VF EK S
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST- 441
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK------------------------------- 227
WN LI G + G + ++++F M K
Sbjct: 442 ---WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 498
Query: 228 ---------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
NV + ++D R G L++A EL +MP V +W A++ ++G++
Sbjct: 499 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 558
Query: 278 E 278
E
Sbjct: 559 E 559
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 11/197 (5%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHK 77
S KP ET ++S+I + L Q +HA I + L + + T LI
Sbjct: 367 SGFKPD----ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCG 422
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++ AL +F K + +N LI GLA N +S + F M + V PN +T+ V
Sbjct: 423 CVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLG 482
Query: 138 SVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ + L+ G+ + +I ++ + + D+ + GK + A ++ + P +
Sbjct: 483 ACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MT 539
Query: 197 ESVLLWNVLINGCSKIG 213
V W L+ C K G
Sbjct: 540 PDVATWGALLGACKKHG 556
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 236/462 (51%), Gaps = 49/462 (10%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPK 92
I+L+ S + K++RQIHA++ + + + + +L HK +DYA I D
Sbjct: 10 IALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKP 69
Query: 93 NLHIFNVLIRGLAENSHFQSCISH--FVFMLRL-----SVRPNRLTYPFVSKSVASLSLL 145
L N +IR +H +S + F F R+ ++P+ T F+ ++ L +
Sbjct: 70 TLFALNSMIR-----AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMR 124
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H + ++ G + D V+ L +Y +LG
Sbjct: 125 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELG--------------------------C 158
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ C K+ F +P + +++ R GD+ A +LFE MPE+ ++W
Sbjct: 159 LDSCHKV---------FNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWN 209
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI+G++Q GE+ +AL +F M GV+ N ++S LSAC ++GAL+ G H+YI N
Sbjct: 210 AMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERN 269
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + T LVD+YAKCG++E A VF +EK++ TW++ + GLA++G E+ ++ F
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
M G P+ F+++L C G V FDSMR ++ IEP ++H+ +V+L +R
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
G+++ A++ I +MP P +W +L A R +K+ ++ +A
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 15/243 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N + ++S + Q R H+ I + + + R+ T L+ + ++ A+ +F
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVF 298
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KN++ ++ + GLA N + C+ F M + V PN +T+ V + + + +
Sbjct: 299 WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 358
Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G R + + G+E L D+Y + G+ A + + P K + +W+ L
Sbjct: 359 EGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAA---VWSSL 415
Query: 206 INGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
++ + K +EL + KK N ++V L + + D + + M
Sbjct: 416 LHA----SRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKS 471
Query: 259 KGV 261
KGV
Sbjct: 472 KGV 474
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 151/512 (29%), Positives = 243/512 (47%), Gaps = 47/512 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + L++ + I A +FD + +N +I G EN
Sbjct: 217 REVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFEN 276
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ + F+ ML V+PN +T V+ + LS + + +H VK G D
Sbjct: 277 HECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFC 336
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY LG+ A K+F + +++ + W +I+G K G+ KA+E++ +M
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFS----RMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392
Query: 228 KNVAS-----------------------------------WV----SLIDGFMRKGDLKK 248
NV+ +V +L++ + + + K
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F+ M EK VVSW++MI GF N + +AL F ML V+ N T ++ALSACA
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAA 511
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GAL +G +H Y+ G +G + AL+D+Y KCG A F EKD+++W M
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIM 571
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G HG + A+ F +M+ G PD F+A+L AC +G V F M +
Sbjct: 572 LSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFS 631
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ +V+LLSRVG++ +A N IN+MP PD +WGAL CR H+ ++ ++A
Sbjct: 632 IVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAA 691
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ L P ++Y D W +
Sbjct: 692 KVILELE---PNDVAYHVLLCDLYTDAGKWAQ 720
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/487 (25%), Positives = 212/487 (43%), Gaps = 83/487 (17%)
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
R+ ++S I +A +F +++ +NV++ G + + + + ML
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+RP+ T+P V ++ + +GR +H +++ G + V L MY + G A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
KVFD + + WN +I G
Sbjct: 252 RKVFDGMAVTD----CISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVA 307
Query: 209 ---CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
S++G+ A E+ G K+ +VA SLI + G + AG++F +M K
Sbjct: 308 SGMLSEVGF---AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDA 364
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SWTAMI+G+ +NG +KAL ++ M V +D T+ SAL+ACA +G L+ G+++H
Sbjct: 365 MSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHEL 424
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
F + AL++MYAK +I+ A VF EKD+++W++MI G + R +A
Sbjct: 425 AQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEA 484
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQ----------------------------- 412
+ YF+ M+ +P+ F+A L+AC +G
Sbjct: 485 LYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543
Query: 413 -VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIW 468
VK + +F E V ++++ G D AL+ N+M E PD V +
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF 603
Query: 469 GALFCAC 475
AL CAC
Sbjct: 604 VALLCAC 610
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 42/319 (13%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ L+ + K ID A+ +F K++ ++ +I G N + +F +ML
Sbjct: 436 VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLG-H 494
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+PN +T+ + A+ L G+ +H +++ G+ + +V L D+YV+ G+T A+
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGF 240
F EK+ V+ WN++++G G A+ LF M + + ++V+L+
Sbjct: 555 AQFSVHSEKD----VVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCAC 610
Query: 241 MRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM---LDAGV 292
R G + + ELF M EK + + M++ S+ G+ +A + +M DA V
Sbjct: 611 SRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAV 670
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---------GAIGTALVDMYAK 343
GAL G R+H ++ + K A L D+Y
Sbjct: 671 W----------------GALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTD 714
Query: 344 CGNIEAASLVFGETKEKDL 362
G + V +EK L
Sbjct: 715 AGKWAQVARVRKTMREKGL 733
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYIS 323
+A + +G+ +AL +L++ D AL C A++AG+R
Sbjct: 68 SAALRALCSHGQLAQAL----WLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARAD 123
Query: 324 CN--DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
FGL+ +G A++ M + G I A VF + E+D+ +W M+ G G E+A
Sbjct: 124 AEHPSFGLR--LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA 181
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ + +M+++G PD F +L C W G+ A +RF + E V +
Sbjct: 182 LDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHA----HVLRFGFGDEVDVLN- 236
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+V + ++ G + A + M T D + W A+
Sbjct: 237 -ALVTMYAKCGDIVAARKVFDGMAVT-DCISWNAM 269
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 105/245 (42%), Gaps = 11/245 (4%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H N++T +S ++ + + ++IHA ++ + + + L+ YA
Sbjct: 494 HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYA 553
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+ F + K++ +N+++ G + +S F M+ + P+ +T+ + + +
Sbjct: 554 WAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613
Query: 143 SLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
++ G L H + K + + + D+ ++GK A+ + + P K + +
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAA---V 670
Query: 202 WNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
W L+NGC ++G L V L + +VA V L D + G + + + M
Sbjct: 671 WGALLNGCRIHRHVELGELAAKVIL--ELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTM 728
Query: 257 PEKGV 261
EKG+
Sbjct: 729 REKGL 733
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 240/459 (52%), Gaps = 17/459 (3%)
Query: 45 KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
+ LR HA+++ L + AS+ + +LI + + ++ A ++ D + FNVL
Sbjct: 32 RSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNVL 91
Query: 101 IRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+RGL S + + F M + P+ TYP KS A+ L LGR +H +
Sbjct: 92 LRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTARL 151
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G++ + FV MY + G+ A+++F+E ++ V+ WN +I+G + G +A
Sbjct: 152 GLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRD----VVSWNAMISGFAHAGLFGRA 207
Query: 219 VELFGMM-----PKKNVASWVSLID--GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+++F + PK + + S++ G R D+ +F++M KG++SW AM+ +
Sbjct: 208 MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVY 267
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+ N +A+ +F +M G+ + T+ + L +C +V AL G R+H I
Sbjct: 268 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSM 327
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ AL+DMYA CG ++ A VF +D+++WT++I HG +AI F+KM
Sbjct: 328 LLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQ 387
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G EPD F+AIL AC ++G + + ++F SM ++ I P ++H+ +V+LL R G + +
Sbjct: 388 GLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIRE 447
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
A +FI MP P+ +WGAL ACR H + I +A S
Sbjct: 448 AYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADS 486
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 151/512 (29%), Positives = 243/512 (47%), Gaps = 47/512 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + L++ + I A +FD + +N +I G EN
Sbjct: 217 REVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFEN 276
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ + F+ ML V+PN +T V+ + LS + + +H VK G D
Sbjct: 277 HECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFC 336
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY LG+ A K+F + +++ + W +I+G K G+ KA+E++ +M
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFS----RMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392
Query: 228 KNVAS-----------------------------------WV----SLIDGFMRKGDLKK 248
NV+ +V +L++ + + + K
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F+ M EK VVSW++MI GF N + +AL F ML V+ N T ++ALSACA
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAA 511
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GAL +G +H Y+ G +G + AL+D+Y KCG A F EKD+++W M
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIM 571
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G HG + A+ F +M+ G PD F+A+L AC +G V F M +
Sbjct: 572 LSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFS 631
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ +V+LLSRVG++ +A N IN+MP PD +WGAL CR H+ ++ ++A
Sbjct: 632 IVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAA 691
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ L P ++Y D W +
Sbjct: 692 KVILELE---PNDVAYHVLLCDLYTDAGKWAQ 720
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 126/487 (25%), Positives = 212/487 (43%), Gaps = 83/487 (17%)
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
R+ ++S I +A +F +++ +NV++ G + + + + ML
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+RP+ T+P V ++ + +GR +H +++ G + V L MY + G A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
KVFD + + WN +I G
Sbjct: 252 RKVFDGMAVTD----CISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVA 307
Query: 209 ---CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
S++G+ A E+ G K+ +VA SLI + G + AG++F +M K
Sbjct: 308 SGMLSEVGF---AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDA 364
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SWTAMI+G+ +NG +KAL ++ M V +D T+ SAL+ACA +G L+ G+++H
Sbjct: 365 MSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHEL 424
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
F + AL++MYAK +I+ A VF EKD+++W++MI G + R +A
Sbjct: 425 AQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEA 484
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQ----------------------------- 412
+ YF+ M+ +P+ F+A L+AC +G
Sbjct: 485 LYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543
Query: 413 -VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIW 468
VK + +F E V ++++ G D AL+ N+M E PD V +
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF 603
Query: 469 GALFCAC 475
AL CAC
Sbjct: 604 VALLCAC 610
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 42/319 (13%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ L+ + K ID A+ +F K++ ++ +I G N + +F +ML
Sbjct: 436 VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLG-H 494
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+PN +T+ + A+ L G+ +H +++ G+ + +V L D+YV+ G+T A+
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGF 240
F EK+ V+ WN++++G G A+ LF M + + ++V+L+
Sbjct: 555 AQFSVHSEKD----VVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCAC 610
Query: 241 MRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM---LDAGV 292
R G + + ELF M EK + + M++ S+ G+ +A + +M DA V
Sbjct: 611 SRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAV 670
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---------GAIGTALVDMYAK 343
GAL G R+H ++ + K A L D+Y
Sbjct: 671 W----------------GALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTD 714
Query: 344 CGNIEAASLVFGETKEKDL 362
G + V +EK L
Sbjct: 715 AGKWAQVARVRKTMREKGL 733
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYIS 323
+A + +G+ +AL +L++ D AL C A++AG+R
Sbjct: 68 SAALRALCSHGQLAQAL----WLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARAD 123
Query: 324 CN--DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
FGL+ +G A++ M + G I A VF + E+D+ +W M+ G G E+A
Sbjct: 124 AEHPSFGLR--LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA 181
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ + +M+++G PD F +L C W G+ A +RF + E V +
Sbjct: 182 LDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHA----HVLRFGFGDEVDVLN- 236
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+V + ++ G + A + M T D + W A+
Sbjct: 237 -ALVTMYAKCGDIVAARKVFDGMAVT-DCISWNAM 269
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 105/245 (42%), Gaps = 11/245 (4%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H N++T +S ++ + + ++IHA ++ + + + L+ YA
Sbjct: 494 HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYA 553
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+ F + K++ +N+++ G + +S F M+ + P+ +T+ + + +
Sbjct: 554 WAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613
Query: 143 SLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
++ G L H + K + + + D+ ++GK A+ + + P K + +
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAA---V 670
Query: 202 WNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
W L+NGC ++G L V L + +VA V L D + G + + + M
Sbjct: 671 WGALLNGCRIHRHVELGELAAKVIL--ELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTM 728
Query: 257 PEKGV 261
EKG+
Sbjct: 729 REKGL 733
>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
Length = 1165
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H S+ A +FD +N+ + +IRG + + + F+ M R V+ N T
Sbjct: 208 HGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A+ SL G +H LI+ G E D F+ + MY + G A + FD +K+
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKD- 326
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + +A LF +M +K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 327 ---IVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQ 383
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K V+WTA+I+ F NG+ A+ F +M G + N LSA A + L G
Sbjct: 384 MPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG 443
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ H Y + A+ T+LV MYAKCG + A VF L+ +MI H
Sbjct: 444 RQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQH 503
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F KM +G +P+ FL ILT C +G V+ N+F+SMR Y +EP+ +H
Sbjct: 504 GFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEH 563
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G + +AL IN MP+ W AL A H + AKIA Q
Sbjct: 564 YTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQ 617
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ G ++G L A+ +F M ++V SW +++DG + G + +A +F+ MPE+ VV
Sbjct: 168 NALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVV 227
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWT+MI G+ + G L +F M GV+ N T+ AL ACA G+++HN I
Sbjct: 228 SWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLI 287
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
F L +G +++ MY++ G + A F ++KD+++W ++I G H E+A
Sbjct: 288 ISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAH 347
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
FK M + D + +++ G ++ ++ F+ M
Sbjct: 348 VLFKLM----HQKDAVSWTSMVVGFANRGWMRESVELFEQM 384
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 24/319 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G+ R A +FD+ P ++ V+ W L+ + G L A +F MP++N SW
Sbjct: 48 YGRRGRLRDAQLLFDQMPSRD----VISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+ ++R + A LF +MP K VS+ A+I+G ++ +A ++ +M +
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEM---PWQ 160
Query: 294 ANDFTVVSALSAC-AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
D +AL A +VG L +RV ++ D +A+VD K G++ A
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDV----ISWSAMVDGLCKHGSVSEARR 216
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E+++++WT+MI G G + F M G + + T L AC +
Sbjct: 217 VFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASL 276
Query: 413 VKLAL---NFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ + N SM F D F+ S ++ + SR G + A + M + D V
Sbjct: 277 AREGIQIHNLIISMGFELDIFLGDS------IIIMYSRFGWMVDAKRAFDCM-QQKDIVS 329
Query: 468 WGALFCACRTHKDTKIAKI 486
W +L H + A +
Sbjct: 330 WNSLITGYVQHDMVEEAHV 348
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ + R+G L+ A LF+QMP + V+SWTA++ ++ G+ A +F M +
Sbjct: 43 ALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPS 102
Query: 295 ---------------------------NDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
N + + +S AK L V+ + +
Sbjct: 103 WNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP---W 159
Query: 328 GLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ +G+ AL+ Y + G + A VF +D+++W+AM+ GL HG +A + F
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219
Query: 387 KM 388
M
Sbjct: 220 AM 221
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/484 (28%), Positives = 246/484 (50%), Gaps = 44/484 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K L Q++ Q+I+ L + + I++ ++YA F + ++ ++N +I+G
Sbjct: 16 KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 75
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
+ + + I ++ M V PN T+ +V K+ S+ +G+ +H K G +
Sbjct: 76 TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 135
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
FV+ L MY + G+ A VFD+ ++ +V+ W +I+G + G +A+ +F
Sbjct: 136 FVQNSLVSMYAKFGQISYARIVFDKLHDR----TVVSWTSIISGYVQNGDPMEALNVFKE 191
Query: 225 MPKKNV-ASWVSLID--------------------------------------GFMRKGD 245
M + NV W++L+ + ++G
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 251
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
++ A F +M + ++ W AMI+G++ NG E+A+ +F +M+ +R + T+ SA+ A
Sbjct: 252 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 311
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A+VG+LE + YIS +++ + T L+DMYAKCG+I A VF +KD++ W
Sbjct: 312 SAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLW 371
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+ MI G +HG ++AI + +M +G P+ F+ +LTAC SG VK F M
Sbjct: 372 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP- 430
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
D+ IEP +H++ VV+LL R G +++A +FI MP P +WGAL AC+ H+ ++ +
Sbjct: 431 DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGE 490
Query: 486 IALQ 489
IA +
Sbjct: 491 IAAE 494
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 6/200 (3%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI + SI A +FD K++ +++V+I G + H Q I + M +
Sbjct: 339 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 398
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V PN T+ + + + L+ G L L+ G+E + D+ + G A+
Sbjct: 399 VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAY 458
Query: 185 KVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
P K V +W L++ C K+ A E ++ N +V L + +
Sbjct: 459 DFIMSMPIK---PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYA 515
Query: 242 RKGDLKKAGELFEQMPEKGV 261
+ + M +KG+
Sbjct: 516 SAHLWTRVANVRLMMTQKGL 535
>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
Length = 1165
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H S+ A +FD +N+ + +IRG + + + F+ M R V+ N T
Sbjct: 208 HGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A+ SL G +H LI+ G E D F+ + MY + G A + FD +K+
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKD- 326
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + +A LF +M +K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 327 ---IVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQ 383
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K V+WTA+I+ F NG+ A+ F +M G + N LSA A + L G
Sbjct: 384 MPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG 443
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ H Y + A+ T+LV MYAKCG + A VF L+ +MI H
Sbjct: 444 RQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQH 503
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F KM +G +P+ FL ILT C +G V+ N+F+SMR Y +EP+ +H
Sbjct: 504 GFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEH 563
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G + +AL IN MP+ W AL A H + AKIA Q
Sbjct: 564 YTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQ 617
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ G ++G L A+ +F M ++V SW +++DG + G + +A +F+ MPE+ VV
Sbjct: 168 NALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVV 227
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWT+MI G+ + G L +F M GV+ N T+ AL ACA G+++HN I
Sbjct: 228 SWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLI 287
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
F L +G +++ MY++ G + A F ++KD+++W ++I G H E+A
Sbjct: 288 ISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAH 347
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
FK M + D + +++ G ++ ++ F+ M
Sbjct: 348 VLFKLM----HQKDAVSWTSMVVGFANRGWMRESVELFEQM 384
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 24/319 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + G+ R A +FD+ P ++ V+ W L+ + G L A +F MP++N SW
Sbjct: 48 YGRRGRLRDAQLLFDQMPSRD----VISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L+ ++R + A LF +MP K VS+ A+I+G ++ +A ++ +M +
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEM---PWQ 160
Query: 294 ANDFTVVSALSAC-AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
D +AL A +VG L +RV ++ D +A+VD K G++ A
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDV----ISWSAMVDGLCKHGSVSEARR 216
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E+++++WT+MI G G + F M G + + T L AC +
Sbjct: 217 VFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASL 276
Query: 413 VKLAL---NFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ + N SM F D F+ S ++ + SR G + A + M + D V
Sbjct: 277 AREGIQIHNLIISMGFELDIFLGDS------IIIMYSRFGCMVDAKRAFDCM-QQKDIVS 329
Query: 468 WGALFCACRTHKDTKIAKI 486
W +L H + A +
Sbjct: 330 WNSLITGYVQHDMVEEAHV 348
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ + R+G L+ A LF+QMP + V+SWTA++ ++ G+ A +F M +
Sbjct: 43 ALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPS 102
Query: 295 ---------------------------NDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
N + + +S AK L V+ + +
Sbjct: 103 WNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP---W 159
Query: 328 GLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ +G+ AL+ Y + G + A VF +D+++W+AM+ GL HG +A + F
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219
Query: 387 KM 388
M
Sbjct: 220 AM 221
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/484 (28%), Positives = 246/484 (50%), Gaps = 44/484 (9%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K L Q++ Q+I+ L + + I++ ++YA F + ++ ++N +I+G
Sbjct: 1 KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
+ + + I ++ M V PN T+ +V K+ S+ +G+ +H K G +
Sbjct: 61 TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
FV+ L MY + G+ A VFD+ ++ +V+ W +I+G + G +A+ +F
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDR----TVVSWTSIISGYVQNGDPMEALNVFKE 176
Query: 225 MPKKNV-ASWVSLID--------------------------------------GFMRKGD 245
M + NV W++L+ + ++G
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 236
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
++ A F +M + ++ W AMI+G++ NG E+A+ +F +M+ +R + T+ SA+ A
Sbjct: 237 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 296
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A+VG+LE + YIS +++ + T L+DMYAKCG+I A VF +KD++ W
Sbjct: 297 SAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLW 356
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+ MI G +HG ++AI + +M +G P+ F+ +LTAC SG VK F M
Sbjct: 357 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP- 415
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
D+ IEP +H++ VV+LL R G +++A +FI MP P +WGAL AC+ H+ ++ +
Sbjct: 416 DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGE 475
Query: 486 IALQ 489
IA +
Sbjct: 476 IAAE 479
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 6/200 (3%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI + SI A +FD K++ +++V+I G + H Q I + M +
Sbjct: 324 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 383
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V PN T+ + + + L+ G L L+ G+E + D+ + G A+
Sbjct: 384 VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAY 443
Query: 185 KVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
P K V +W L++ C K+ A E ++ N +V L + +
Sbjct: 444 DFIMSMPIK---PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYA 500
Query: 242 RKGDLKKAGELFEQMPEKGV 261
+ + M +KG+
Sbjct: 501 SAHLWTRVANVRLMMTQKGL 520
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/468 (31%), Positives = 226/468 (48%), Gaps = 65/468 (13%)
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVK 157
+LIR A ++ + F +LR + P+R T P + S L + G +H V+
Sbjct: 64 ILIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVR 123
Query: 158 SGVEYDAFVRVHLADMY--------------------------------VQLGKTRGAFK 185
G D FV L MY V+ G+ A +
Sbjct: 124 RGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKR 183
Query: 186 VFDETPEKNK-----------------------------SESVLLWNVLINGCSKIGYLR 216
VFDE P +N +V+ WN ++ G ++ G L
Sbjct: 184 VFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLP 243
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A ++F MP +N+ SW +++ G+ D+ A ELF+ MPEK VVSWT MI+G++Q G
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 277 AEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--I 333
+ L +F M ++ V+ N+ T+VS LSACA + ALE G VH +I + L +
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL+DMYAKCG + A +F K++ W A+I LA++G ++ F++M +G
Sbjct: 364 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGE 423
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
+P+ F+ +LTAC + G V F SM ++P VKH+ +V++L R G +++A
Sbjct: 424 KPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAE 483
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
I MP PD +++GAL ACR HK +A+ SLNL+ Q+
Sbjct: 484 ELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQS 531
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 6/191 (3%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSI 79
S+ N +T ++S + + ++ R +HA I H + ++ + LI +
Sbjct: 318 SNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A+ IF+ KN+ +N LI LA N + + + F M R +PN +T+ V +
Sbjct: 378 DIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTAC 437
Query: 140 ASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L+ GR + GV+ + + DM + G A ++ P +
Sbjct: 438 SHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP---MAPD 494
Query: 199 VLLWNVLINGC 209
V+++ L+ C
Sbjct: 495 VMVFGALLGAC 505
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 237/486 (48%), Gaps = 38/486 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ +L+ + + L Q+HA+I+ L + + ++ A S+ P
Sbjct: 12 VATLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDALSCPSVAASLLSVAVPVR 71
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L N ++ LA ++ + ++ F + + RP+ ++P + + A S L G LH
Sbjct: 72 LR--NAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHA 129
Query: 154 LIVKSGVEYDAFVRVHLADMY-------------------------------VQLGKTRG 182
++ GV+ D FVR L Y V G
Sbjct: 130 AAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILT 189
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A ++FD+ P +N V+ WN +++G K G L A +LF MP++ A++ SLI G++
Sbjct: 190 ARELFDQIPHRN----VVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLN 245
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G++ A LF+++ ++ + +W+ MI+G +QNG +AL +F + + ++ +V
Sbjct: 246 AGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGL 305
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKD 361
+SAC+++G + + YI + + L++M AKCGN+E A+L+F +D
Sbjct: 306 MSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRD 365
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+ ++ +M+ G +HG +A++ F +M+ G PD F +LTAC ++G V+ +FD
Sbjct: 366 VFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFD 425
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
M+ +Y I PS H+ +V+LL R G + A I MP P WGAL C+ H D
Sbjct: 426 MMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDI 485
Query: 482 KIAKIA 487
++ KIA
Sbjct: 486 ELGKIA 491
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 227/439 (51%), Gaps = 40/439 (9%)
Query: 84 SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
++F+ + K N+ +N +I LA + + F M +LS++PNR T+P KS ++L
Sbjct: 30 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L GR H + G E D FV L DMY
Sbjct: 90 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMY---------------------------- 121
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
SK G LR A LF + +N+ SW S+I G+++ D +A +F+ M E+ V+
Sbjct: 122 -------SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVI 174
Query: 263 SWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
SW ++I ++QNG + +++ +F +M+ D + N T+ + L ACA G+ G +H+
Sbjct: 175 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQ 234
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ +GT+++DMY KCG +E A F +EK++ +W+AM+ G +HG ++A
Sbjct: 235 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 294
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ F +M +G +P+ F+++L AC ++G ++ ++F +M ++ +EP V+H+ +V+
Sbjct: 295 LEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVD 354
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
LL R G + +A + I M PDFV+WGAL ACR HK+ + +I+ + L+ P+
Sbjct: 355 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELD---PKN 411
Query: 502 MSYCQTFMQQKGDGRTWRE 520
Y D W +
Sbjct: 412 CGYYVLLSNIYADAGRWED 430
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 50/301 (16%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ H Q ++ +++ L+ S + A ++FD + +N+ + +I G +N
Sbjct: 96 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155
Query: 108 SHFQSCISHFVFMLRLS---------------------------VRPNRLTYPFVSKSVA 140
+ F M V+ + Y V+ S
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215
Query: 141 SLSLL-----SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
L+ LG+ +H ++K G+E + FV + DMY + GK A K FD EKN
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN- 274
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE 251
V W+ ++ G G+ ++A+E+F M K N ++VS++ G L++
Sbjct: 275 ---VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331
Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA-LSA 305
F+ M E GV + M++ + G ++A F ++ DF V A L A
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA----FDLIKGMKLRPDFVVWGALLGA 387
Query: 306 C 306
C
Sbjct: 388 C 388
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 19/254 (7%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K N +T + ++ S S + + IH Q+I L ++ + T +I
Sbjct: 200 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGK 259
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A FD KN+ ++ ++ G + H + + F M V+PN +T+ V +
Sbjct: 260 VEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 319
Query: 139 VASLSLLSLG----RGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
+ LL G + + H V+ GVE H M LG+ + FD
Sbjct: 320 CSHAGLLEEGWHWFKAMSHEFDVEPGVE-------HYGCMVDLLGRAGYLKEAFDLIKGM 372
Query: 194 NKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
++W L+ C +G + A +LF + P KN +V L + + G +
Sbjct: 373 KLRPDFVVWGALLGACRMHKNVDLGEI-SARKLFELDP-KNCGYYVLLSNIYADAGRWED 430
Query: 249 AGELFEQMPEKGVV 262
+ M G+V
Sbjct: 431 VERMRILMKNSGLV 444
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 228/454 (50%), Gaps = 37/454 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +IS + +D A + H +N+ + LI G + + F ML +
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ +T + + A L L GR LH L+ + G+ + V L DMY + G A++V
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD + + SW ++IDG+ + G +
Sbjct: 295 FDALGRGRRPQ----------------------------------SWNAMIDGYCKLGHV 320
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A LF+QM ++ +V++ ++I G+ G +AL +F QM +RA++FT+VS L+AC
Sbjct: 321 DVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTAC 380
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A +GAL G +H I + +GTAL+DMY KCG +E ASLVF +D+ TW+
Sbjct: 381 ASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWS 440
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI GLA +G + A++YF M G +P+ ++AILTAC +S + +F+ MR
Sbjct: 441 AMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLL 500
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ I P ++H+ +++LL R G +D+A++ + MP P+ VIW ++ ACR HKD +A+
Sbjct: 501 HNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARN 560
Query: 487 ALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
A + L L + Y Q + D R W +
Sbjct: 561 AAEH--LLKLEPDEDAVYVQLY-NIYIDSRQWED 591
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
L+ A LF++MP + TA+ F + E L ++ +M GV + FT
Sbjct: 53 LRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKC 112
Query: 306 CAKVGA----------------------LEAGVRVHNYISC----------NDFGLKGAI 333
CA+ A L + +H Y+ +D +K A+
Sbjct: 113 CARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAV 172
Query: 334 G-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
T ++ AK G ++ A + + +++++WT +I G + GR +A+ F M+ G
Sbjct: 173 AWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG 232
Query: 393 TEPDGTVFLAILTAC 407
EPD + +L+AC
Sbjct: 233 IEPDEVTVIGLLSAC 247
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 234/466 (50%), Gaps = 54/466 (11%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
I+ ++S++ S +LRQIHAQ+I NL ++LI+ SL +DYA S+
Sbjct: 4 ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
F N IF LI+G ++ S+ + + ML + + + P V K+ L
Sbjct: 64 FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
GR +H ++K+ + +D FV + MY+ G+ A +VFD
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR-------------- 169
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
MP ++V SW S+I G+++ G+++ A ELF++MPE+ +VS
Sbjct: 170 ---------------------MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVS 208
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
AMI+G+ + +ML G+R + +VS LSA A +G +E G +H Y+S
Sbjct: 209 CNAMIDGYGK------------EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 256
Query: 324 CNDFGLK-GAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
N L G IG+AL+DMY+KCG IE A VF + +++ W +MI GLAIHG +A
Sbjct: 257 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 316
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F +M EP+ FL +L+ C + G V+ +F+SM Y I P ++H+ +++
Sbjct: 317 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 376
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G+++ AL I MP D + W A+ A H +I K A
Sbjct: 377 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSA 422
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 107/242 (44%), Gaps = 25/242 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFT-P 91
++S I ++ + +HA + ++ + +S I + LI S I+ A +F +
Sbjct: 235 VLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHR 294
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N+ +N +I GLA + + + FV M R+ + PN +T+ + + + L+ G+
Sbjct: 295 RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ-- 352
Query: 152 HCLIVKSGVE-YDAFVRVH----LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+S E Y R+ + D++ + G+ A V P + +L W ++
Sbjct: 353 --FYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE---ADLLAWKAIL 407
Query: 207 NGCSKIGYLR-------KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
+ K G++ +A+EL + +S+V L + + + G ++ M ++
Sbjct: 408 SASMKHGHIEIGKSAALRAIEL----APDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQR 463
Query: 260 GV 261
GV
Sbjct: 464 GV 465
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 237/480 (49%), Gaps = 74/480 (15%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+S+ A +F+ L ++N +I GL+++ I + M ++ + LT+ F+
Sbjct: 20 QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 79
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
KS A +S + G+ + +K G E +FV L MYV G+ A KVFD E++
Sbjct: 80 KSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERD-- 137
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-----------------ASWV----- 234
V+ WN +I G + +K ++LF M NV + W
Sbjct: 138 --VVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 195
Query: 235 -----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-- 275
+LID + R+G + AG +F QM EK +VSW AMI G+++ G
Sbjct: 196 VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNL 255
Query: 276 -----------------------------EAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ +A+ +F +M+ + V+ ++ TV +ALSAC
Sbjct: 256 VAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSAC 315
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A +G+L+AG VH+YI +D +G +L+DMY KCG +E A VF + K +D ++WT
Sbjct: 316 AHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWT 375
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++I GLA++G E A+ F +M+ G P F+ +L AC + G V + F SM
Sbjct: 376 SIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENT 435
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y + P +KH+ VV+LL R G +D A NFI KMP PD VIW L AC+ H + +A+I
Sbjct: 436 YRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEI 495
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 39/235 (16%)
Query: 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF------ 110
H + + LI ID+A +F KN+ +N +I G A+ +
Sbjct: 202 HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKL 261
Query: 111 -------------------------QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ F M+ V+P+ +T + A L L
Sbjct: 262 FNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSL 321
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H I K ++ D FV L DMY + G A +VF++ K+ + W +
Sbjct: 322 DAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM----KTRDSVSWTSI 377
Query: 206 INGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM 256
I+G + G+ A+ +F M K+ + ++V ++ G + K E F+ M
Sbjct: 378 ISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSM 432
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 245/497 (49%), Gaps = 46/497 (9%)
Query: 32 THIISLIHSSN--STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T +I+ +S+ S + L IHA+ I+ + A+ T L++ + S+ YA +FD
Sbjct: 20 TRLITAASASSPVSLRALLPIHARAIVLGVSANPAFATSLLAGVA-PASLAYARRVFDAT 78
Query: 90 TPKNLHIFNVLIRGLAEN--SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
++ +++N L+R + + SH ++ + M V P+ TYP V + A+ L L
Sbjct: 79 PVRDAYMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWL 138
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H +V+ + D FV L MY Q G+ A VF E+ S +V+ W ++
Sbjct: 139 GRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAES--HGSSRTVVSWTSMVA 196
Query: 208 GCSKIGYLRKAVELFGMMPKKNV----------------ASWV---SLIDGFMRK----- 243
G + Y +AV LFG M + V W+ ++ GF+ +
Sbjct: 197 GYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDA 256
Query: 244 ---------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
G + A LFE MP + + SW M+ + Q+ + +A+ F +ML
Sbjct: 257 NIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRML 316
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
V + T+VS LSACA+ GAL+ G VH + IG LVDMYAKCG I
Sbjct: 317 TEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIA 376
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+A VF + + +++W+AMI A HG E+A++ F M G P+ F A+L AC
Sbjct: 377 SARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACG 436
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+SG V+ L F+S+ DY + P+++H+ +V++L R G++ +A I M PD +W
Sbjct: 437 HSGLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVW 496
Query: 469 GALFCACRTHKDTKIAK 485
GA C+ H + ++A+
Sbjct: 497 GAFLAGCKLHGNLELAE 513
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 175/411 (42%), Gaps = 50/411 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF--DHFTPKNLHIFNVLIRGLA 105
R +H ++ L + + LI+ + A +F H + + + + ++ G
Sbjct: 140 RAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYV 199
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+N +F ++ F M+ V PN +T + L G +H +++ G + +
Sbjct: 200 QNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIP 259
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L MY + G A +F+ P + S+ WN ++ + + +A++ F M
Sbjct: 260 LANALIAMYGKCGSIPMAQTLFEGMPAR----SLASWNTMVAMYEQHADVVEAIKFFRRM 315
Query: 226 PKKNVA----------------------SWVS-----------------LIDGFMRKGDL 246
+ V WV L+D + + G++
Sbjct: 316 LTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEI 375
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +F+ + + VVSW+AMI+ ++ +G +E+AL +F M + GVR N FT + L AC
Sbjct: 376 ASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVAC 435
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGN-IEAASLVFGETKEKDLL 363
G +E G++ N I +D+ + + +VDM + G IEA ++ G + D
Sbjct: 436 GHSGLVEEGLKHFNSI-LSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKC 494
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
W A + G +HG E A ++ + ++ D T ++ + + +G +K
Sbjct: 495 VWGAFLAGCKLHGNLELA-EFVARDLFQSGSNDVTFYVLMSNMYFEAGMLK 544
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 124/304 (40%), Gaps = 14/304 (4%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT + + +H +I A+ + LI+ SI A ++F
Sbjct: 222 NEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLF 281
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ ++L +N ++ +++ I F ML V + +T V + A L
Sbjct: 282 EGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQ 341
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H L G++ DA + L DMY + G+ A VFD + SV+ W+ +I
Sbjct: 342 TGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCL----RMRSVVSWSAMI 397
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G +A++LF +M + V + F L G + E+G+ + +
Sbjct: 398 SAYANHGASEEALKLFSLMKNEGVRP-----NSFTFTAVLVACGH--SGLVEEGLKHFNS 450
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV---GALEAGVRVHNYIS 323
+++ + + E M + AG + ++ +S C GA AG ++H +
Sbjct: 451 ILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLE 510
Query: 324 CNDF 327
+F
Sbjct: 511 LAEF 514
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 233/461 (50%), Gaps = 41/461 (8%)
Query: 35 ISLIHSSNST-KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
ISL+ T QL+QI + + L + +A+++I + L + ++ S+ YA +F
Sbjct: 14 ISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIIS-LHAHSNARSSLFYAERLFLCL 72
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K+ I+N +++ E + S + ML + PN T+ FV ++ + L +G
Sbjct: 73 QNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGL 132
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
H +VK G E FV+ L +Y G A +FD + +++ V+ W LI+G
Sbjct: 133 CFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRD----VVTWTCLISGY 188
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
G + A ELF MP+KN SW +LI G++R G K
Sbjct: 189 LNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFK---------------------- 226
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
+AL +F+ M +G R N ++V AL+ACA +GAL+ G +H Y+ + L
Sbjct: 227 ---------EALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSL 277
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+GTAL+DMYAKCG IE A VF E ++D+ +T +I GLA H + E AI F +M
Sbjct: 278 DRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQ 337
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G P+ F+ +L AC G V L F+SM Y IEP ++H+ +V+LL R G++
Sbjct: 338 DEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKI 397
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
++A + +MP PD GAL ACR H D ++ + + S
Sbjct: 398 EEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDS 438
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 252/492 (51%), Gaps = 47/492 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++SL+ + ++ +H IL+ + ++ ++S ++I+Y+ +FD+ ++
Sbjct: 173 MLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRD 232
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +N L+ A+ + + M P+ T+ V AS L LGR LH
Sbjct: 233 LVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHG 292
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I+++ + DA V L MY++ G AF++F+ + +K+ V+LW +I+G + G
Sbjct: 293 QILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKD----VVLWTAMISGLVQNG 348
Query: 214 YLRKAVELFGMMPK---------------------------------------KNVASWV 234
KA+ +F M K ++A+
Sbjct: 349 SADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQN 408
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL+ + G L ++ +F++M ++ +VSW AMI G++QNG KAL +F +M
Sbjct: 409 SLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTP 468
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASL 352
+ T+VS L CA G L G +H+++ N GL+ I T+LVDMY KCG+++ A
Sbjct: 469 DSITIVSLLQGCASTGQLHLGKWIHSFVIRN--GLRPCILVDTSLVDMYCKCGDLDIAQR 526
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
F + DL++W+A+I G HG+ E A++++ K + SG +P+ +FL++L++C ++G
Sbjct: 527 CFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGL 586
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ LN ++SM D+ I P+++HH VV+LLSR G+V++A N K P + G +
Sbjct: 587 VEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIIL 646
Query: 473 CACRTHKDTKIA 484
ACR + + ++
Sbjct: 647 DACRANGNNELG 658
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 139/558 (24%), Positives = 253/558 (45%), Gaps = 66/558 (11%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
+A ++ +H PS+ T ++ S N +H +I++ L + I + LI+
Sbjct: 54 LATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINF 113
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ D A +FD +N+ + +I + S F M R ++P+ +T
Sbjct: 114 YAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTM 173
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
+ V+ L+ + + LH + G D + + MY + + K+FD +
Sbjct: 174 LSLLFGVSELAHV---QCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQ 230
Query: 193 KNKSESVLLWNVLINGCSKIGY------LRKAVELFGMMPKKNVASWV------------ 234
++ ++ WN L++ ++IGY L K + + G P V
Sbjct: 231 RD----LVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKL 286
Query: 235 ---------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
SLI +++ G++ A +FE+ +K VV WTAMI+G Q
Sbjct: 287 GRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQ 346
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
NG A+KALA+F QML GV+++ T+ S ++ACA++G+ G VH Y+ ++ + A
Sbjct: 347 NGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIAT 406
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+LV M+AKCG+++ +S+VF + +++L++W AMI G A +G +A+ F +M
Sbjct: 407 QNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQ 466
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD +++L C +GQ+ L + S + P + T +V++ + G +D A
Sbjct: 467 TPDSITIVSLLQGCASTGQLHLG-KWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQ 525
Query: 454 NFINKMPETPDFVIWGALFCACRTH------------------KDTKIAKIALQSSCSLN 495
N+MP + D V W A+ H K + +++ SSCS N
Sbjct: 526 RCFNQMP-SHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHN 584
Query: 496 LSIPQAMSYCQTFMQQKG 513
+ Q ++ ++ + G
Sbjct: 585 GLVEQGLNIYESMTRDFG 602
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 194/411 (47%), Gaps = 42/411 (10%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN +I + + ++ + ML+ V + T+P + K+ +SL+L SLG LH I+
Sbjct: 37 FNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRIL 96
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
SG+ DA++ L + Y + G A KVFD PE+N V+ W +I S+ G +
Sbjct: 97 VSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERN----VVPWTSIIGCYSRTGRVP 152
Query: 217 KAVELFGMMPKKNV-ASWVSLID---------------------GFMRKGDLKKA----- 249
+A LF M ++ + S V+++ GFM +L +
Sbjct: 153 EAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMY 212
Query: 250 ---------GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+LF+ M ++ +VSW ++++ ++Q G + L + M G + T
Sbjct: 213 GKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFG 272
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S LS A G L+ G +H I F L + T+L+ MY K GNI+ A +F + +K
Sbjct: 273 SVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDK 332
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D++ WTAMI GL +G ++A+ F++M+ G + +++TAC G L +
Sbjct: 333 DVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVH 392
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
M F + + + +V + ++ G +D++ +KM + + V W A+
Sbjct: 393 GYM-FRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKR-NLVSWNAM 441
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 150/537 (27%), Positives = 266/537 (49%), Gaps = 48/537 (8%)
Query: 1 MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+KG+ N L TA+A ++ T+++ + + K+ ++IH Q+I ++
Sbjct: 119 LKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
A+ T +++ + + ID A +FD ++L +N +I G ++N + + +
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M RP+ +T V + A + LL +G+ +H +++G + LADMY + G
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
A +FD +K +V+ WN +++G + G KA+ +F M ++ + + V++++
Sbjct: 299 VETARLIFDGMDQK----TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354
Query: 239 GF---MRKGDLKK-----------------------------------AGELFEQMPEKG 260
GDL++ A ++F + +
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VSW AMI G++QNG +AL F +M G++ + FT+VS + A A++ +H
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474
Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
I SC D + + TALVDMY+KCG I A +F ++ ++TW AMI G HG
Sbjct: 475 LIIRSCLDKNI--FVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
A+ F KM EP+ +L++++AC +SG V L F SM+ DY +EPS+ H+
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL R G++ +A +FI MP +P ++GA+ AC+ HK+ ++ + A + LN
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELN 649
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/481 (25%), Positives = 229/481 (47%), Gaps = 45/481 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ S K+L QI +I + L+ T+L+S S + SI+ A +F+ K +
Sbjct: 55 LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
++ +++G A+NS ++ ++ M V+P + ++ K + L G+ +H ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ + F + +MY + + A+K+FD PE++ ++ WN +I G S+ G+ +
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD----LVSWNTIIAGFSQNGFAK 230
Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
KA+EL G P K V +L
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G ++ A +F+ M +K VVSW +M++G+ QNGE EKA+A+F +ML+ G+
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T++ AL ACA +G LE G VH ++ + G ++ +L+ MY+KC ++ AS +F
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ ++W AMI G A +GR +A+ F +M G +PD ++++ A + A
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA- 469
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ + ++ ++ T +V++ S+ G + A + M + W A+ T
Sbjct: 470 KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGT 528
Query: 478 H 478
H
Sbjct: 529 H 529
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 113/260 (43%), Gaps = 11/260 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R++ A+ + +KS ++ T +I + + T+ + IH II L + +TT
Sbjct: 430 RVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTT 489
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ S +I A +FD + +++ +N +I G + ++ + F M + +V P
Sbjct: 490 ALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEP 549
Query: 128 NRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
N +TY V + + L+ G R + G+E + D+ + G+ + A+
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDF 609
Query: 187 FDETPEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
+ P S + ++ ++ C ++G + A +LF + P + V L + +
Sbjct: 610 IENMP---ISPGITVYGAMLGACKIHKNIEVGE-KAAKKLFELNPDEG-GYHVLLANIYA 664
Query: 242 RKGDLKKAGELFEQMPEKGV 261
K E+ + M +KG+
Sbjct: 665 STSKWSKVAEVRKTMEKKGL 684
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/513 (28%), Positives = 260/513 (50%), Gaps = 43/513 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N T ++ + + + ++ Q+H +I L ++ + +++ S + A
Sbjct: 190 KP-NPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAK 248
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
++FD +N +N +I G N F M V+ + + V K A++
Sbjct: 249 AVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIK 308
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+S + LHC ++K+G ++D ++ L Y + + AFK+F + ++V+ W
Sbjct: 309 EMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF---CMMHGVQNVVSWT 365
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV--------------------------------- 230
+I+G + G +A+ LF M ++ V
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYEN 425
Query: 231 --ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
+ +L D + + GD +A ++FE + EK +V+W+AM++G++Q G+ E A+ +F Q+
Sbjct: 426 SPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485
Query: 289 DAGVRANDFTVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
GV N+FT S L+ACA ++E G + H+ + F + +ALV MYAK GNI
Sbjct: 486 KEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 545
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E+A+ VF ++DL++W +MI G A HG +++++ F++M E DG F+ +++AC
Sbjct: 546 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 605
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G V +FD M DY I P+++H++ +V+L SR G ++KA++ INKMP I
Sbjct: 606 THAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATI 665
Query: 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500
W L ACR H + ++ ++A + SL PQ
Sbjct: 666 WRTLLAACRVHLNVQLGELAAEKLISLQ---PQ 695
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 206/471 (43%), Gaps = 49/471 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H Q I + T L+ +S++ +FD KN+ + L+ G +N
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M ++PN T+ V +A+ + G +H +++KSG++ FV
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ +MY + A VFD +N + WN +I G G +A ELF M
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRN----AVSWNSMIAGFVTNGLDLEAFELFYRMRL 287
Query: 228 KNV-------ASWV--------------------------------SLIDGFMRKGDLKK 248
+ V A+ + +L+ + + ++
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDD 347
Query: 249 AGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A +LF M + VVSWTA+I+G+ QNG ++A+ +F QM GVR N FT + L+A A
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
V + ++H + ++ ++GTAL D Y+K G+ A+ +F EKD++ W+A
Sbjct: 408 AV----SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
M+ G A G E A++ F ++ G EP+ F ++L AC F S
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 523
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
++ + +V + ++ G ++ A N + K D V W ++ H
Sbjct: 524 GFSNALCVSSALVTMYAKRGNIESA-NEVFKRQVDRDLVSWNSMISGYAQH 573
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 192/452 (42%), Gaps = 55/452 (12%)
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
++ +FD + L N L+ + N + ++ F+ + R + + V K
Sbjct: 44 HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L +G+ +HC +K G D V L DMY++ +VFDE KN V+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN----VV 159
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK-------- 248
W L+ G + G +A++LF M K N ++ +++ G G ++K
Sbjct: 160 SWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV 219
Query: 249 ---------------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
A +F+ M + VSW +MI GF NG +A
Sbjct: 220 IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAF 279
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN--DFGLKGAIGTALVD 339
+F++M GV+ + + CA + + ++H + N DF L I TAL+
Sbjct: 280 ELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN--IKTALMV 337
Query: 340 MYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
Y+KC I+ A +F +++++WTA+I G +GR ++A+ F +M G P+
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHF 397
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
+ ILTA + V + ++ +Y PSV T + + S++G ++A
Sbjct: 398 TYSTILTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFEL 452
Query: 459 MPETPDFVIWGALFCACRTHKDTKIA-KIALQ 489
+ E D V W A+ D + A KI LQ
Sbjct: 453 IDE-KDIVAWSAMLSGYAQMGDIEGAVKIFLQ 483
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 205/377 (54%), Gaps = 13/377 (3%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M + + N+ P V K + + GR LH +I+K +E D +V L DMY + G+
Sbjct: 1 MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
A +VFD EK+ ++ N +++G + G+ ++ L M K NV +W S
Sbjct: 61 VEKARRVFDRMVEKD----LVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNS 116
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
LI GF +KGD ++FE M GV +SWT++I+G QN E A F QML G
Sbjct: 117 LISGFAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRG 176
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
T+ + L+ACA + + G +H Y + +ALVDMYAKCG I AS
Sbjct: 177 FLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEAS 236
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYS 410
++F E++ +TW +MI+G A HG ++AI+ F +M S G + D F A+LTAC ++
Sbjct: 237 VLFYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHA 296
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ + F M+ Y I P ++H+ +V+LL R G +++A + I KMP PD +WGA
Sbjct: 297 GMVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGA 356
Query: 471 LFCACRTHKDTKIAKIA 487
L ACR H D +A++A
Sbjct: 357 LLGACRNHGDIGLAEVA 373
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 156/349 (44%), Gaps = 33/349 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H+ I+ +++ + + + LI S ++ A +FD K+L N ++ G ++
Sbjct: 30 RILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVALNAMLSGYGQH 89
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + M +L ++PN +T+ + A ++ + L++ +GVE D
Sbjct: 90 GFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPDVISW 149
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG---- 223
+ VQ + AF F + + + + ++ C+ + +R+ E+ G
Sbjct: 150 TSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVV 209
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+ + ++ +L+D + + G + +A LF MPE+ V+W +MI G++ +G ++A+ +
Sbjct: 210 IRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCDEAIEL 269
Query: 284 FFQMLDA-GVRANDFTVVSALSACAKVGALEAG--------------VRVHNYISCNDFG 328
F QM + G + + T + L+AC+ G +E G R+ +Y
Sbjct: 270 FDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHY------- 322
Query: 329 LKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+VD+ + GN+ EA ++ + DL W A++ HG
Sbjct: 323 ------ACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACRNHG 365
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 20/231 (8%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+I GL +N ++ F ML P T V + A+++ + GR +H V
Sbjct: 152 VISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIR 211
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
VE D +VR L DMY + G A +F PE+N + WN +I G + GY +A+
Sbjct: 212 VEDDIYVRSALVDMYAKCGFISEASVLFYMMPERN----TVTWNSMIFGYANHGYCDEAI 267
Query: 220 ELFGMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMIN 269
ELF M K + ++ +++ G ++ LF M +K + + M++
Sbjct: 268 ELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACMVD 327
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC---AKVGALEAGVR 317
+ G +A M +M V+ + F + L AC +G E R
Sbjct: 328 LLGRAGNLNEAYDMIKKM---PVKPDLFVWGALLGACRNHGDIGLAEVAAR 375
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 235/488 (48%), Gaps = 58/488 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
++ A +FD K+ ++N +I G +N + I F ++ S R + T +
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+VA L L LG +H L K+G +V +Y + GK + A +F E +
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREF----RRP 285
Query: 198 SVLLWNVLINGCSKIGYLRKAVELF--------------------------------GMM 225
++ +N +I+G + G ++ LF G
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYS 345
Query: 226 PKKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
K N S S L + + +++ A +LF++ PEK + SW AMI+G++QNG E A+
Sbjct: 346 LKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
++F +M ++ N T+ LSACA++GAL G VH+ + DF + TAL+ MY
Sbjct: 406 SLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG+I A +F +K+ +TW MI G +HG ++A+ F +M+ SG P FL
Sbjct: 466 AKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFL 525
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L AC ++G VK F+SM Y EPSVKH+ VV++L R G + +AL FI MP
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPI 585
Query: 462 TPDFVIWGALFCACRTHKDTKIAK-----------------IALQSSCSLNLSIPQAMSY 504
P +W L ACR HKDT +A+ + L + S + + PQA +
Sbjct: 586 QPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645
Query: 505 CQTFMQQK 512
QT ++K
Sbjct: 646 RQTAKKRK 653
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 223/491 (45%), Gaps = 50/491 (10%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I++ + + L S S L Q HAQI+LH + T+L S +I YA IF
Sbjct: 18 ISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSL 147
++ +FNVL+RG + N S ++ F + + ++PN TY F + +
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H + G + + + ++ MY + + A KVFD PEK+ +LWN +I+
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD----TILWNTMIS 193
Query: 208 G---------------------CSKIGY---------------LRKAVELFGMMPKKNVA 231
G C+++ LR +++ + K
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 232 SWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
S ++ GF+ + G +K A LF + +V++ AMI+G++ NGE E +L++F ++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ +G + T+VS + + + A +H Y ++F ++ TAL +Y+K I
Sbjct: 314 MLSGAKLKSSTLVSLVPVSGHLMLIYA---IHGYSLKSNFLSHTSVSTALTTVYSKLNEI 370
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E+A +F E+ EK L +W AMI G +G E AI F++M S P+ IL+AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSAC 430
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G + L D +R F E S+ T ++ + ++ G + +A + MP+ + V
Sbjct: 431 AQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNE-VT 488
Query: 468 WGALFCACRTH 478
W + H
Sbjct: 489 WNTMISGYGLH 499
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 13/263 (4%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++SL+ S + IH + N + + ++T L + S I+ A +FD K+
Sbjct: 325 LVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKS 384
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +N +I G +N + IS F M PN +T + + A L LSLG+ +H
Sbjct: 385 LPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHD 444
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
L+ + E +V L MY + G A ++FD P+KN+ + WN +I+G G
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNE----VTWNTMISGYGLHG 500
Query: 214 YLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSW 264
+ ++A+ +F M +A +++ ++ G +K+ E+F M E V +
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560
Query: 265 TAMINGFSQNGEAEKALAMFFQM 287
+++ + G ++AL M
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAM 583
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 149/526 (28%), Positives = 261/526 (49%), Gaps = 77/526 (14%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKS-IDYALSIF------- 86
L+ + + Q+HA+II +S +TT++I S +S HK +++A +F
Sbjct: 20 LLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTRYAVQ 79
Query: 87 ----DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+H + ++N +I+ + + + F ML ++ ++ + K+ A +
Sbjct: 80 RIRRNHLD-DDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARV 138
Query: 143 SLLSLGRGLHCLIVK--------------------SGVEY-----------DAFVRVHLA 171
L+ G+ +H L++K +E+ D+ +
Sbjct: 139 CLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMI 198
Query: 172 DMYVQLGKTRGAFKVFDETP------------------------------EKNKSESVLL 201
D YV+ G A ++FD P EK ++
Sbjct: 199 DGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVS 258
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +I G +K G + A LF MPK++V SW ++IDG+ + GD+K A LF++MP+K V
Sbjct: 259 WNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDV 318
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
V++ ++ G++QNG +AL +F +M + + ++ T+V ALSA +++G +E +HN
Sbjct: 319 VAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHN 378
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y N + G + AL+DMY+KCG+IE A L+F +K + W AMI G+A +G +
Sbjct: 379 YFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKL 438
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A +M +PDG F+ +L AC ++G VK L F+ MR + +EP ++H+ +V
Sbjct: 439 AFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMV 498
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
++L + G V+ AL FI +MP P+ +IW L AC+ H++ I ++
Sbjct: 499 DILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGEL 544
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 32/289 (11%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLF------ASSRITTQLISSASLHKSIDYALSIFDHF 89
+L+ + ++ QL + +HN F + ++ LI S SI+ A+ IFD
Sbjct: 356 TLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGV 415
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K + +N +I G+A N + + M RLSV+P+ +T+ V + A L+
Sbjct: 416 DQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVK--E 473
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGK---TRGAFKVFDETP-EKNKSESVLLWNVL 205
GL C + V H M LGK GA K +E P E N ++W L
Sbjct: 474 GLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPND----IIWRTL 529
Query: 206 INGCSK-----IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
++ C IG L + M N +S+V L + + R G A ++ M ++
Sbjct: 530 LSACQNHENFTIGEL--IAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQN 587
Query: 261 VV-----SWTAM---INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
+ SW + ++ F ++ ++ + +LD G A++ V+
Sbjct: 588 LTKVPGCSWIELEGVVHEFLVRDKSHPYVSEIYSVLD-GFGASNLQVID 635
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 222/454 (48%), Gaps = 60/454 (13%)
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
SH + ++ + +M +L + + P V K+ + +S+ +G+ +H VK+G+ D FV
Sbjct: 88 SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN------------------KSESVLLWNVLINGC 209
L MY + G A +FD+ E++ S++ W +I G
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207
Query: 210 SKIGYLRKAVELFGMMPKKNV--------------------------------------- 230
+ L + LF M ++NV
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
A +L+D + + G+++ A +F+ M K V++WTAMI+ ++Q + A +F QM D
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
GVR N+ T+VS LS CA GAL+ G H YI + + TAL+DMYAKCG+I A
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F E ++D+ TW M+ G +HG E+A++ F +M G +P+ F+ L AC ++
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V F+ M D+ + P V+H+ +V+LL R G +D+A I MP TP+ IWGA
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
+ AC+ HK++ + ++A + +L PQ Y
Sbjct: 508 MLAACKIHKNSNMGELAARELLALE---PQNCGY 538
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 47/335 (14%)
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+++F F+ +++ + +I G + + FV M+ +V PN +T + S +
Sbjct: 186 ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFV 245
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ LG+ LH I+++G + L DMY + G+ R A +FD K++ V+ W
Sbjct: 246 GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSM----KNKDVMTW 301
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKK----------------NVASW------- 233
+I+ ++ + A +LF G+ P + ++ W
Sbjct: 302 TAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDK 361
Query: 234 ----------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+LID + + GD+ A LF + ++ + +W M+ G+ +G EKAL +
Sbjct: 362 QGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKL 421
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMY 341
F +M GV+ ND T + AL AC+ G + G + + +DFGL + +VD+
Sbjct: 422 FTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKM-IHDFGLVPKVEHYGCMVDLL 480
Query: 342 AKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ G + EA ++ ++ W AM+ IH
Sbjct: 481 GRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 22/300 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+IT +I + + +++HA I+ + S + T L+ I A +IF
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIF 290
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D K++ + +I A+ + FV M VRPN LT + A L
Sbjct: 291 DSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALD 350
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G+ H I K GVE D ++ L DMY + G GA ++F E +++ + WNV++
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRD----ICTWNVMM 406
Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
G GY KA++LF M K N +++ + G + + LFE+
Sbjct: 407 AGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEK------- 459
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV---GALEAGVRVH 319
MI+ F + E M + AG+ + ++ ++ + GA+ A ++H
Sbjct: 460 ----MIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 186/299 (62%), Gaps = 1/299 (0%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ +I SK G+++KA +F M N +W ++IDG+MR G + A ++F++MPE
Sbjct: 100 VMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPE 159
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+AL F +M +GVR + +++AL+AC +GAL G+ V
Sbjct: 160 RDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWV 219
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 220 HRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA 279
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F +M+ DY I P ++H+
Sbjct: 280 HESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGC 339
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNL 496
+V+L SR G+++ AL I MP P+ V+ G+L ACRTH +T +A+ ++ LN+
Sbjct: 340 LVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNV 398
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 13/270 (4%)
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWT 265
++ Y ++ + SW S I R G L +A + F M GV +++
Sbjct: 7 TRKNYGXPKIQRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFI 66
Query: 266 AMING---FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
A+++G F E L + R + + + +K G ++ V +Y+
Sbjct: 67 ALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYM 126
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ ++D Y + G ++ A +F + E+DL++WTAMI G G +E+A+
Sbjct: 127 E----DINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEAL 182
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+F++M SG PD +A L AC G + L + + + +V+ +++L
Sbjct: 183 VWFREMQISGVRPDYVAIIAALNACTNLGALSFGL-WVHRYVMNQDFKNNVRVSNSLIDL 241
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALF 472
R G V+ A +KM E V W ++
Sbjct: 242 YCRCGCVEFAREVFDKM-EKRTVVSWNSVI 270
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 69/274 (25%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A+ +FD ++L + +I G + + + F M VRP+ + +
Sbjct: 147 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNA 206
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G +H ++ + + V L D+Y + G A +VFD+
Sbjct: 207 CTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDK--------- 257
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
M K+ V SW S+I GF G+ ++ F +M E
Sbjct: 258 --------------------------MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 291
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ G + + T AL+AC+ VG +E G+R
Sbjct: 292 E-------------------------------GFKPDAVTFTGALTACSHVGLVEEGLRY 320
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ D+G+ I LVD+Y++ G +E A
Sbjct: 321 FQTMK-RDYGISPRIEHYGCLVDLYSRAGRLEDA 353
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 237/472 (50%), Gaps = 49/472 (10%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPK 92
ISL+ S + K++RQIHA++ + + Q + + +L H +DYA I D
Sbjct: 18 ISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKP 77
Query: 93 NLHIFNVLIRGLAENSHFQSCISH--FVFMLRL-----SVRPNRLTYPFVSKSVASLSLL 145
L N +IR +H +S + F F R+ ++P+ T F+ ++ L +
Sbjct: 78 TLFALNSMIR-----AHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMR 132
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H + ++ G + D V+ L +Y +LG KVF+ + + +
Sbjct: 133 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPD----FVCRTAM 188
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+ C+ R GD+ A +LFE MPEK ++W
Sbjct: 189 VTACA-------------------------------RCGDVAFARKLFEGMPEKDPIAWN 217
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI+G++Q GE+ +AL +F M GV+ N +++S LSAC ++GAL+ G H+YI N
Sbjct: 218 AMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERN 277
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ +GT LVD+YAKCG+++ A VF +EK++ TW++ + GLA++G E+ ++ F
Sbjct: 278 KIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLF 337
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
M G P+ F+++L C G V FDSMR ++ IEP + H+ +V+L +R
Sbjct: 338 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYAR 397
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
G+++ A++ I +MP +W +L A R +K+ ++ +A + L S
Sbjct: 398 AGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETS 449
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 152/287 (52%), Gaps = 4/287 (1%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
+I+ C G + V + G++ K V V +++ M + GDL + +LFE + K
Sbjct: 643 MISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKN 702
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+VSW MI QNG AE+ LA F G++ + T ++ L C +G + +H
Sbjct: 703 LVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHG 762
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I F I TAL+D+YAK G +E +S VF E D + WTAM+ A HG
Sbjct: 763 LIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRD 822
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI++F+ M++ G PD F +L AC +SG V+ +F++M Y IEP + H++ +V
Sbjct: 823 AIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMV 882
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L+ R G + A I +MP P +WGAL ACR +KDT++ A
Sbjct: 883 DLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKA 929
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 269 NGFSQNGEAEKALAMFFQML------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
N F + L F++L + G R N+ T +S +SAC G E GV +H +
Sbjct: 604 NRFHHFKDGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLV 663
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ + + AL+++Y K G++ ++ +F + K+L++W MI +G E+ +
Sbjct: 664 MKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL 723
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
YF + G +PD FLA+L C G V+L+ + F F + T +++L
Sbjct: 724 AYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF-NANTCITTALLDL 782
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+++G+++ + ++ +PD + W A+ A TH
Sbjct: 783 YAKLGRLEDSSTVFLEIT-SPDSMAWTAMLAAYATH 817
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/271 (18%), Positives = 122/271 (45%), Gaps = 15/271 (5%)
Query: 27 NNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
N +T +IS +H N + + IH ++ + ++ L++ + + +
Sbjct: 636 NEVTFLSMISACVHGGNKEEGV-CIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKL 694
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ + KNL +N +I +N + +++F + ++P++ T+ V + + ++
Sbjct: 695 FEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV 754
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L +G+H LI+ G + + L D+Y +LG+ + VF E S + W +
Sbjct: 755 RLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT----SPDSMAWTAM 810
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ + GY R A++ F +M ++ ++ L++ G +++ FE M ++
Sbjct: 811 LAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYR 870
Query: 262 VS-----WTAMINGFSQNGEAEKALAMFFQM 287
+ ++ M++ ++G + A + +M
Sbjct: 871 IEPRLDHYSCMVDLMGRSGLLQDAYGLIKEM 901
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 139/441 (31%), Positives = 224/441 (50%), Gaps = 37/441 (8%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HA+++ + ++ LI + + +A +FD + ++L +N LI G
Sbjct: 817 VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRR 876
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + F M V+ + +T V L C ++ DA +
Sbjct: 877 YSEVLVVFEEMRMADVKGDAVTMVKVV--------------LACTVLGEWGVVDAMI--- 919
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSE-SVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
E E+NK E V L N LI+ + + A +F M +
Sbjct: 920 -------------------EYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDR 960
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
N+ SW ++I G+ + G+L A +LF+ MP + V+SWT+MI+ +SQ G+ KA+ +F +M+
Sbjct: 961 NMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMM 1020
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
V+ ++ TV S LSACA +GAL+ G VH YI D +G AL+DMY KCG +E
Sbjct: 1021 VTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVE 1080
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
VF E ++D ++WT++I GLA++G + A+ F M+ G P F+ +L AC
Sbjct: 1081 KGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACA 1140
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
++G V L +F+SM Y + P +KH+ VV+LLSR G + +A FI +MP PD V+W
Sbjct: 1141 HAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVW 1200
Query: 469 GALFCACRTHKDTKIAKIALQ 489
L A + H + +A+IA +
Sbjct: 1201 RILLSASQVHGNLHLAEIATK 1221
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 9/228 (3%)
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
KA ELF Q+P + W MI G+SQ + +A+ + M + N+ T L ACA
Sbjct: 748 KANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACA 807
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
++ + VH + F + AL+ YA + A VF E E+DL++W +
Sbjct: 808 RISNVSCTT-VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNS 866
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ---VKLALNFFDSMR 424
+I G RY + + F++M + + D + ++ AC G+ V + + + +
Sbjct: 867 LICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENK 926
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+E V ++++ R VD A ++M + + V W A+
Sbjct: 927 ----VEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDR-NMVSWNAMI 969
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 226/436 (51%), Gaps = 51/436 (11%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
H+ L ++A T N S N ++ + N+++ + ++ LH+ F ++
Sbjct: 418 HLVINLEESVAITQNYVSRSNLLN------VLEFLKRPNASELVSGTRDRVNLHDKFKNA 471
Query: 64 ------RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
L+ A K+ LS +D T + F +G + + +
Sbjct: 472 IEARFPGTIDDLVQKAEEKKAQQKKLSFWDSVTDSHAGAF----KGYSGSESPGQSFHFY 527
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
+ RL + P+ LTYPF+ K+ L + +G H +V+ G E D +V+ L +MY
Sbjct: 528 IQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGFENDVYVQNSLVNMY--- 584
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
S +G +R A +F M + +V SW S+I
Sbjct: 585 --------------------------------SNLGDIRAASYIFQTMSQLDVVSWTSMI 612
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G+ + GD++ A +LF++MPEK +V+W+ MI+G+++N KA+ ++ + GV+AN+
Sbjct: 613 AGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELYNVLQSEGVQANET 672
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+VS +S+CA +GALE G + H+Y+ N + +GTALVDMYA+CG+I+ A VF E
Sbjct: 673 VMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDMYARCGSIDKAVQVFDEL 732
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
EKD L+WTA+I G A+HG E+A+QYF +M+ +G P F A+L+AC + G V+ +
Sbjct: 733 GEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITFTAVLSACSHRGLVERGM 792
Query: 418 NFFDSMRFDYFIEPSV 433
F++M+ DY +EP +
Sbjct: 793 KIFETMKRDYCVEPRL 808
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 131/307 (42%), Gaps = 41/307 (13%)
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
N + R V L A + ID ++K + KKA + + S
Sbjct: 450 NASELVSGTRDRVNLHDKFKNAIEARFPGTIDDLVQKAEEKKAQQKKLSFWDSVTDSHAG 509
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
G+S + ++ + Q G+ ++ T + AC ++G+++ G++ H ++ +
Sbjct: 510 AFKGYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHG 569
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
F + +LV+MY+ G+I AAS +F + D+++WT+MI G G E A + F
Sbjct: 570 FENDVYVQNSLVNMYSNLGDIRAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFD 629
Query: 387 KM--------------------------MYS-----GTEPDGTVFLAILTACWYSGQVKL 415
KM +Y+ G + + TV ++++++C + G ++L
Sbjct: 630 KMPEKNLVTWSTMISGYAKNNCFNKAIELYNVLQSEGVQANETVMVSVISSCAHLGALEL 689
Query: 416 ALNFFDSMRFDYFIEPSVKHH----TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
DY + + + T +V++ +R G +DKA+ +++ E D + W AL
Sbjct: 690 G-----EKAHDYVVRNKITVNLILGTALVDMYARCGSIDKAVQVFDELGEK-DALSWTAL 743
Query: 472 FCACRTH 478
H
Sbjct: 744 IAGFAMH 750
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 225/454 (49%), Gaps = 66/454 (14%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N+LIR LA S ++ + + + + TYPFV +++ +L + GR H +K
Sbjct: 15 NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74
Query: 158 SGVEYDAFVRVHLADM-------------------------------YVQLGKTRGAFKV 186
+G +DA+ L DM YV+ G+ A +
Sbjct: 75 TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134
Query: 187 FDE------TPEKNKSESVL----------------------------LWNVLINGCSKI 212
+E TP++ + L + N L++ K
Sbjct: 135 AEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKN 194
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G L +AV LF MP +NV SW +L+ G+ G + KA LF Q EK ++ WTAMIN +
Sbjct: 195 GCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYV 254
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q+G +AL++F M + + FTVV+ L+ CA +GAL+ G +H + + L
Sbjct: 255 QHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAV 314
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+GTAL+DMYAKCG++E + VF + +D WTA+I GLA +G+ +A++ F+ M S
Sbjct: 315 LGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSE 374
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+PD F+ +L+AC + G V F +M+ Y I P V+H++ +VNLL R GQ+D+A
Sbjct: 375 AKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEA 434
Query: 453 LNFINKMPETPDFV-IWGALFCACRTHKDTKIAK 485
I +P D + ++GAL AC+ + K+++
Sbjct: 435 EKLIKSIPINKDAMPLFGALITACKAQGNVKMSE 468
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+S + +D A +F T K+L ++ +I ++ F +S F M +
Sbjct: 216 TTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIE 275
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+R T + A+L L G+ +H ++ DA + L DMY + G + +V
Sbjct: 276 PDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEV 335
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMR 242
F E+ + W +I G + G +A+ELF M K + +++ ++
Sbjct: 336 F----ERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCH 391
Query: 243 KGDLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKA 280
G + + + F M E V ++ ++N + G+ ++A
Sbjct: 392 GGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEA 434
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 159/505 (31%), Positives = 249/505 (49%), Gaps = 61/505 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-----------KSIDYA 82
++ I N + +QIHAQ++ L + + T+ + H K D++
Sbjct: 87 LLDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWS 146
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
S F P NL +I G + + I + +++ P+ T P V KS A
Sbjct: 147 FSSF----PCNL-----IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARF 197
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
S ++ + +H L VK+ + D FV+ +Y G T GA KVFD P ++ V+ W
Sbjct: 198 SGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRD----VVSW 253
Query: 203 NVLINGCSKIGYLRKAVELFGMMP-KKNVASWVS-------------------------- 235
LI+G K G AV LF M N A++VS
Sbjct: 254 TGLISGYMKAGLFNDAVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPH 313
Query: 236 ---------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
L+D +++ + A LF+++PEK +VSWT+MI+G Q +++L +F++
Sbjct: 314 GKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYE 373
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML +G + + S LSACA +G L+ G VH YI + IGT+L+DMYAKCG
Sbjct: 374 MLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGC 433
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
IE A +F K++ TW A I GLAI+G ++A++ F ++ SGT P+ FLA+ +A
Sbjct: 434 IEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSA 493
Query: 407 CWYSGQVKLALNFFDSMRF-DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C +SG V ++F M Y + P ++H+ +V+LL R V++A+ INKMP PD
Sbjct: 494 CCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDV 553
Query: 466 VIWGALFCACRTHKDTKIAKIALQS 490
I GAL A T+ + ++ L++
Sbjct: 554 QIIGALLSASSTYGNVELTPEMLKT 578
>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 548
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/492 (29%), Positives = 249/492 (50%), Gaps = 47/492 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQII---LHN---LFASSRITTQLISSASLHKSIDYALSIFD 87
+ +L+ + + L Q+HA+I+ LHN L A ++S S+ S AL
Sbjct: 12 VATLLGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSVADSFLSALP--S 69
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
H P L I N ++ L+ +S ++ ++ F M+R + P+ ++P + ++ A + S
Sbjct: 70 HAVP--LSIRNTVLASLSRHSSLRAALAQF-NMIRRTAGPDAFSFPPLLRACAHVPCTST 126
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLAD-------------------------------MYVQ 176
G LH ++ G++ D FVR L +YV
Sbjct: 127 GTALHAAAIRLGLDADLFVRTALIQFYGRCRAAGAARALFDSMTIPSDVSWTAIIIVYVN 186
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
G+ A ++FD P +N ++ WN +++G K G L A LF MP+K A+ SL
Sbjct: 187 SGEIVAARELFDRIPHRN----LVHWNAMVDGYVKCGDLESAGRLFEEMPRKTAAAHTSL 242
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I G+ + G+++ A LF+++ ++ V +W+AMI+G++QNG +A +F + + ++
Sbjct: 243 IGGYAKAGNMEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNEFHKQDICPDE 302
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFG 355
+V+ ++AC+++G + + YI + A + L++M AKCGN+E A+++F
Sbjct: 303 PVIVALMAACSQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAKCGNMERATVLFE 362
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+D+ ++ +M+ G +HG +A++ F +M+ G PD VF +LTAC ++G V+
Sbjct: 363 SMPVRDVFSYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLTACNHAGLVEE 422
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
A +F M+ Y I PS H+ +V+LL R G + A I MP P WGAL C
Sbjct: 423 AKKYFGMMKNVYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHAGSWGALLGGC 482
Query: 476 RTHKDTKIAKIA 487
DT++ KIA
Sbjct: 483 ILQCDTELGKIA 494
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 227/455 (49%), Gaps = 20/455 (4%)
Query: 69 LISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
LI+S S D A+ + ++ + +I G A+N+ + F ML
Sbjct: 292 LINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAG 351
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ PN +T + ASL L G LH + VK G D V L DMY + G+ A
Sbjct: 352 IEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDAR 411
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGF 240
+VFD +K+ V WN +I G + GY KA +LF M + NV +W ++I G+
Sbjct: 412 RVFDMILKKD----VYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGY 467
Query: 241 MRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
++ GD +A +LF +M + G++ SW ++I G+ QNG KAL +F QM +R N
Sbjct: 468 IQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPN 527
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T++S L ACA + A + +H I + G + ++ L+D YAK GNI A +F
Sbjct: 528 SVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQ 587
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD+++W ++I G +HG + A+ F +M G +P FL+I+ A SG V
Sbjct: 588 GISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDK 647
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
F SM DY I P ++HH+ +++LL R G++ +A+ FI M PD IW AL A
Sbjct: 648 GKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTAS 707
Query: 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510
+ H + +A A C L L P S Q +Q
Sbjct: 708 KIHGNIGLAIRA--GECLLELE-PSNFSIHQQILQ 739
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 233/488 (47%), Gaps = 34/488 (6%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHS---SNSTKQLRQIHAQIIL---HNLFA 61
RL AIA I +N+ + L+ S S + R++HA+I L N F
Sbjct: 65 RLADAIACLDAIAQG---GSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPF- 120
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ T+L+S + S+ A +F +NL+ ++ +I + ++ + HF FM+
Sbjct: 121 ---VETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMM 177
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
+ P+ P + ++ + G+ +H L+++ G+ ++ V + +Y + G+
Sbjct: 178 EDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLS 237
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLI 237
A + F+ +++ + WN +I G + G L K+ +LF M ++ + +W LI
Sbjct: 238 CARRFFENMDYRDR----VSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILI 293
Query: 238 DGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+ + + G A EL ++M V +WT+MI+GF+QN +AL +F +ML AG+
Sbjct: 294 NSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIE 353
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNY---ISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
N TV S +SACA + AL+ G+ +H+ I C + L +G +L+DMY+K G +E A
Sbjct: 354 PNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLL---VGNSLIDMYSKSGELEDA 410
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +KD+ TW +MI G G +A F KM S P+ + A+++ +
Sbjct: 411 RRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQN 470
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDFVI 467
G A++ F M D I+ ++ + G +KAL +M P+ V
Sbjct: 471 GDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVT 530
Query: 468 WGALFCAC 475
++ AC
Sbjct: 531 MLSILPAC 538
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N++T I+ + + K++++IH I+ NL + + LI + + +I YA +IF
Sbjct: 527 NSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIF 586
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ K++ +N LI G + S + F M ++ V+P+R T+
Sbjct: 587 QGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTF 632
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 241/486 (49%), Gaps = 55/486 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H + + L + L+S + + ++ A +F +L +N +I G +N
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNG 328
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M + ++P+ +T + ++ L+ G+ +H IV++ D F+
Sbjct: 329 LVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVS 388
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-------------------- 208
L D+Y + R A VFD T KS V++ + +I+G
Sbjct: 389 ALVDIYFKCRDVRMAQNVFDAT----KSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLAL 444
Query: 209 ---------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKA 249
C+ + +R EL G + K +L+D + + G L +
Sbjct: 445 GIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLS 504
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F +M K V+W +MI+ F+QNGE E+AL +F QM+ GV+ N+ T+ S LSACA +
Sbjct: 505 HYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGL 564
Query: 310 GALEAGVRVHNYISCNDFGLKGAI------GTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A+ G +H I +KG I +AL+DMY KCGN+E A VF EK+ +
Sbjct: 565 PAIYYGKEIHGII------IKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEV 618
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W ++I HG ++++ M G + D FLA+++AC ++GQV+ L F M
Sbjct: 619 SWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCM 678
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+Y IEP V+H + +V+L SR G++DKA+ FI MP PD IWGAL ACR H++ ++
Sbjct: 679 TEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVEL 738
Query: 484 AKIALQ 489
A+IA Q
Sbjct: 739 AEIASQ 744
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/515 (25%), Positives = 228/515 (44%), Gaps = 65/515 (12%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K PS+ + H +L + S L +H ++H + + + ++L K
Sbjct: 134 VKMWAHPSSPRPDGH--TLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKM 191
Query: 79 ------IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+D A +FD ++ ++NV++ G + S + F M PN T
Sbjct: 192 YADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATL 251
Query: 133 P-FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
F+S A LLS G LH L VK G+E + V L MY + A+++F P
Sbjct: 252 ACFLSVCAAEADLLS-GVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP 310
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------------------ 227
+ ++ WN +I+GC + G + A+ LF G+ P
Sbjct: 311 R----DDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFK 366
Query: 228 --KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
K + ++ +L+D + + D++ A +F+ VV + MI+G+
Sbjct: 367 QGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYV 426
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
N +E A+ MF +L G++ N V S L ACA + A+ G +H Y+ N + +
Sbjct: 427 LNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCY 486
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ +AL+DMY+KCG ++ + +F + KD +TW +MI A +G E+A+ F++M+ G
Sbjct: 487 VESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEG 546
Query: 393 TEPDGTVFLAILTACW-----YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
+ + +IL+AC Y G+ + +R D F E + ++++ + G
Sbjct: 547 VKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAE------SALIDMYGKCG 600
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
++ AL MPE + V W ++ A H K
Sbjct: 601 NLELALRVFEHMPEKNE-VSWNSIISAYGAHGLVK 634
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/404 (21%), Positives = 188/404 (46%), Gaps = 48/404 (11%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
KS +P +++T ++ + N KQ ++IH I+ + + + L+ + +
Sbjct: 342 KSGLQP-DSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDV 400
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
A ++FD ++ I + +I G N ++ + F ++L L ++PN + +
Sbjct: 401 RMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPAC 460
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
AS++ + +G+ LH ++K+ E +V L DMY + G+ + +F + K++
Sbjct: 461 ASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDE---- 516
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---------------------------- 231
+ WN +I+ ++ G +A++LF M + V
Sbjct: 517 VTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGI 576
Query: 232 -----------SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+ +LID + + G+L+ A +FE MPEK VSW ++I+ + +G +++
Sbjct: 577 IIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKES 636
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
+ + M + G +A+ T ++ +SACA G ++ G+R+ ++ ++ ++ + + +V
Sbjct: 637 VDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMT-EEYHIEPQVEHLSCMV 695
Query: 339 DMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQA 381
D+Y++ G ++ A + K D W A++ +H E A
Sbjct: 696 DLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELA 739
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 194/332 (58%), Gaps = 6/332 (1%)
Query: 161 EYDAFVRVHLADM---YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
E RV + M + + G T A K FD+ P + K V++W V+++G +K G +
Sbjct: 142 EMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKD--VVIWTVMVDGYAKKGEMED 199
Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
A E+F +MP++N W S++ G+ +KGD+ +A +F ++P + + W +MI G+ QNG
Sbjct: 200 AREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCG 259
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
EKAL F +M G ++FTVVS LSACA++G L+AG ++H+ I C + + + L
Sbjct: 260 EKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGL 319
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMYAKCG++ A LVF E+++ W AMI G A++G+ + ++Y +M S D
Sbjct: 320 IDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDA 379
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+ +L+AC + G + AL M +Y IE ++H+ +V+LL R G++ +A I
Sbjct: 380 VTFITVLSACAHGGLMSEALEVISKME-EYGIEMGIRHYGCMVDLLGRAGKLKEAYELIK 438
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+MP P+ + GA+ AC H D K+A+ ++
Sbjct: 439 RMPMKPNETVLGAMIGACWIHSDMKMAEQVMK 470
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 49/279 (17%)
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
P + K+ S L + LH +K+G + D F+ + Y + G A KVFD
Sbjct: 55 PQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFD---- 110
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+MP++NV +W ++I G++R GD K A
Sbjct: 111 -------------------------------LMPERNVVTWNAMIGGYLRNGDAKSALLA 139
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMF----FQMLDAGVRANDFTVVSALSACAK 308
FE+MP K VSW+ MI GF++NG+ A F +++ D + +TV+ + AK
Sbjct: 140 FEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVI----WTVM--VDGYAK 193
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
G +E V + ++ + +++V Y K G++ A +F ++L W +M
Sbjct: 194 KGEMEDAREVFELMPERNY----FVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSM 249
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
I G +G E+A++ F +M G EPD +++L+AC
Sbjct: 250 IAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSAC 288
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 121/280 (43%), Gaps = 15/280 (5%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +IF +NL I+N +I G +N + + F M P+ T V + A
Sbjct: 231 AEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQ 290
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L G+ +H +I G+ + FV L DMY + G A VF+ E+N V
Sbjct: 291 LGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERN----VFC 346
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
WN +I G + G + +E M + N+ ++++++ G + +A E+ +M
Sbjct: 347 WNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKME 406
Query: 258 ----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
E G+ + M++ + G+ ++A + +M ++ N+ + + + AC ++
Sbjct: 407 EYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRM---PMKPNETVLGAMIGACWIHSDMK 463
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+V I + + L ++YA E A ++
Sbjct: 464 MAEQVMKMIGADSAACVNSHNVLLSNIYAASEKWEKAEMI 503
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 236/445 (53%), Gaps = 21/445 (4%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
+ +LI+S ID A+ +F+ K+ +N ++ A+ HF + +L
Sbjct: 44 SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKP------GHFEYARQLFE 97
Query: 126 R---PNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
+ PN ++Y + + RG + +K ++ + Q+G
Sbjct: 98 KIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISA-----LAQVGLMG 152
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A ++F PEKN + W+ +++G G L AVE F P ++V +W ++I G+M
Sbjct: 153 EARRLFSAMPEKN----CVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYM 208
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
+ G ++ A LF++M + +V+W AMI G+ +NG AE L +F ML+ GV+ N ++ S
Sbjct: 209 KFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTS 268
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
L C+ + AL+ G +VH + GT+LV MY+KCG+++ A +F + KD
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++ W AMI G A HG ++A++ F +M G +PD F+A+L AC ++G V L + +F+
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFN 388
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
+MR D+ IE +H+ +V+LL R G++ +A++ I MP P I+G L ACR HK+
Sbjct: 389 TMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNL 448
Query: 482 KIAKIALQSSCSLNLSIPQAMSYCQ 506
+A+ A ++ L+ +I A Y Q
Sbjct: 449 NLAEFAAKNLLELDPTI--ATGYVQ 471
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 234/466 (50%), Gaps = 42/466 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N + ++S N + Q+H+ I + I + L+ S +++ A +F
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +N+ +N LI +N + F ML V P+ +T V + ASLS +
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+G+ +H +VK+ + D + DMY +
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAK----------------------------- 301
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
CS+I ++A +F MP +NV + S+I G+ K A +F +M E+ VVSW
Sbjct: 302 ---CSRI---KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWN 355
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
A+I G++QNGE E+AL++F + V ++ + L ACA + L G++ H ++ +
Sbjct: 356 ALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKH 415
Query: 326 DFGLKGA------IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
F + +G +L+DMY KCG +E LVF + E+D ++W AMI G A +G
Sbjct: 416 GFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGN 475
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A++ F++M+ SG +PD + +L+AC ++G V+ ++F SM D+ + P H+T +
Sbjct: 476 EALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCM 535
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
V+LL R G +++A + I +MP PD VIWG+L AC+ H++ + K
Sbjct: 536 VDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGK 581
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S + + N LI+ SK G L ++F MP++N+ +W S++ G + G L +A LF
Sbjct: 52 SNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRS 111
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ +W +M++GF+Q+ E+AL F M G N+++ S LSAC+ + + G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG 171
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
V+VH+ I+ + F IG+ALVDMY+KCGN+ A VF E ++++++W ++I +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF------DSMRFDYFI 429
G +A+ F+ M+ S EPD ++++AC +K+ D +R D +
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
V++ ++ ++ +A + MP
Sbjct: 292 S------NAFVDMYAKCSRIKEARFIFDSMP 316
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 214/421 (50%), Gaps = 36/421 (8%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ L+ S + S+ + FD +N+ +N +I G A+ + + F M R
Sbjct: 82 VANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQG 141
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ T + + + L GR +HCL++ SG D + L DMY
Sbjct: 142 FLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMY---------- 191
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
SK G L A F MMP K+V SW S++ + G
Sbjct: 192 -------------------------SKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHG 226
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ A F+ MPE+ VSW MI+ + Q G+ +AL ++ QM G ++ T+V LS
Sbjct: 227 SVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLS 286
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC ++G L G VH YI N ++ +L+DMYAKCG ++ A +F E +++++
Sbjct: 287 ACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVS 346
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +I GLA+HGR AI +F+ M+ + T PDG F+A+L++C + G ++ ++F+SMR
Sbjct: 347 WNVIIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMR 405
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y ++ V+H+ +V+LL R G ++KA+ I +MP PD V+WGAL ACR H + KI
Sbjct: 406 HVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIG 465
Query: 485 K 485
K
Sbjct: 466 K 466
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 36/290 (12%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
++ C++ A+ + G+ K V +L+ + G L + F++M +
Sbjct: 51 VVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRN 110
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW +MI G++Q G+ +A A+F +M G ++FT+ S L AC++ G LE G VH
Sbjct: 111 VVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHC 170
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGN-------------------------------IEA 349
+ + + +G ALVDMY+KCG+ ++A
Sbjct: 171 LMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDA 230
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A F E++ ++W MI G+Y +A+ +K+M G PD + +L+AC
Sbjct: 231 ARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGR 290
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
G + + +R D P + ++++ ++ GQVD A+ +M
Sbjct: 291 IGDLTVGKMVHLYIR-DNIHNPDISLINSLLDMYAKCGQVDTAIRLFREM 339
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 12/239 (5%)
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+F+ + + V + + + + +AL + ML GV N+FT+ + AC + A
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ + VH F + + AL+ YA G++ + F E +++++W +MI G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-----LNFFDSMRFD 426
A G +A F +M G D ++L AC G ++ L D
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ + +V++ S+ G + A MP V W ++ CA H A+
Sbjct: 181 LILGGA------LVDMYSKCGDLCMARRCFEMMP-IKSVVSWTSMLCAQTKHGSVDAAR 232
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 188/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y Q G A +VFD PE+N + WN ++ + + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MMP +NVASW +++ G+ + G L++A +F+ MP+K VSW AM+ +SQ G +E+ L
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G N LS CA + ALE G+++H + +G+ +G AL+ MY
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGN+E A F E +E+D+++W MI G A HG ++A++ F M + T+PD +
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC +SG V+ +++F SM D+ + +H+T +++LL R G++ +A + + MP
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD +WGAL A R H++ ++ + A +
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAE 576
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 192/418 (45%), Gaps = 24/418 (5%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
S+ +++ S + + A S+F + + +N L+ LA +S F M
Sbjct: 68 STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
VR + +TY + S A+ L+SL R L E DA + YV+ G+
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A +F+ E + + WN L++G + G + +A ELF MP ++V SW ++ G+
Sbjct: 180 EARGLFNSRTEWD----AISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R+GD+ +A LF+ P + V +WTA+++G++QNG E+A +F DA N + +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
++A + ++ + N + C + A ++ YA+ G +E A VF +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++W AM+ + G E+ +Q F +M G + + F +L+ C ++ +
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407
Query: 422 SM-RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ R Y + V + ++ + + G ++ A N +M E D V W + H
Sbjct: 408 RLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 134/332 (40%), Gaps = 53/332 (15%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+++ G+ A ++F P ++ S +N ++ G S G L A LF +P+ + S+
Sbjct: 48 HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
+L+ L A LF++MP EK V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW M+ + +NG E+A +F ++ + + + +S + G + + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALMSGYVQWGKMSEARELFDRM 219
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D +V YA+ G++ A +F +D+ TWTA++ G A +G E+A
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M E + + A++ A + A F+ M +V ++
Sbjct: 276 RVFDAM----PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTG 326
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ G +++A + MP+ D V W A+ A
Sbjct: 327 YAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I MR G + A LF MP + ++ AM+ G+S NG A ++F A R ++
Sbjct: 45 ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
++ + L A A +L + + + D ++ +A G + A F
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
EKD ++W M+ +GR E+A F S TE D + A+++ G++ A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDAISWNALMSGYVQWGKMSEA 212
Query: 417 LNFFDSMR--------------------------FDYFIEPSVKHHTVVVNLLSRVGQVD 450
FD M FD V T VV+ ++ G ++
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLE 272
Query: 451 KALNFINKMPETPDFVIWGALFCA 474
+A + MPE + V W A+ A
Sbjct: 273 EARRVFDAMPER-NAVSWNAMVAA 295
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/486 (27%), Positives = 236/486 (48%), Gaps = 38/486 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ +L+ + + L Q+HA+I+ L + + ++ S+ P
Sbjct: 12 VATLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDTLSCPSVVASLLSVAVPVR 71
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L N ++ LA ++ + ++ F + + RP+ ++P + + A S L G LH
Sbjct: 72 LR--NAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHA 129
Query: 154 LIVKSGVEYDAFVRVHLADMY-------------------------------VQLGKTRG 182
++ GV+ D FVR L Y V G
Sbjct: 130 AAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILT 189
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A ++FD+ P +N V+ WN +++G K G L A +LF MP++ A++ SLI G++
Sbjct: 190 ARELFDQIPHRN----VVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLN 245
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G++ A LF+++ ++ + +W+ MI+G +QNG +AL +F + + ++ +V
Sbjct: 246 AGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGL 305
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKD 361
+SAC+++G + + YI + + L++M AKCGN+E A+L+F +D
Sbjct: 306 MSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRD 365
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+ ++ +M+ G +HG +A++ F +M+ G PD F +LTAC ++G V+ +FD
Sbjct: 366 VFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFD 425
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
M+ +Y I PS H+ +V+LL R G + A I MP P WGAL C+ H D
Sbjct: 426 MMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDI 485
Query: 482 KIAKIA 487
++ KIA
Sbjct: 486 ELGKIA 491
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 231/459 (50%), Gaps = 40/459 (8%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
H+I++ + R++ ++ NL++ ++S + I A +FD
Sbjct: 99 NHLINMYAKCGKEVEARKVFDKMSARNLYS----WNNMLSGYAKLGMIKPARKLFDKMPE 154
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
K++ +N ++ A+ ++ + + +L ++ N ++ V L + L R +
Sbjct: 155 KDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQV 214
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H I+ +G + + + D YV K
Sbjct: 215 HGQILVAGFLSNVVLSSSVLDAYV-----------------------------------K 239
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
G + A +LF M ++V +W +++ G+ + GD+K A ELF +MPEK VSWTA+I+G+
Sbjct: 240 CGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGY 299
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
++NG KAL +F +M+ VR + FT S L ACA + +L+ G ++H Y+ +F
Sbjct: 300 ARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNT 359
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ +AL+DMY+KCG++ VF K D++ W +I LA HG E+AIQ M+
Sbjct: 360 IVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVR 419
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD F+ IL AC +SG V+ LNFF+SM DY I PS +H+ +++LL R G +
Sbjct: 420 SGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFE 479
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ ++ + KMP PD +W AL CR H ++ + A +
Sbjct: 480 EVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAE 518
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 40/319 (12%)
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
K L N LIN +K G +A ++F M +N+ SW +++ G+ + G +K A +LF+
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+MPEK VVSW M+ +Q G ++AL + + G++ N F+ L+ C K+ +
Sbjct: 151 KMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGL 210
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKC------------------------------ 344
+VH I F + ++++D Y KC
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAK 270
Query: 345 -GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G++++A+ +F E EK+ ++WTA+I G A +G +A++ F KMM PD F +
Sbjct: 271 WGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSC 330
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKM 459
L AC +K Y + + + +T+VV+ L S+ G + + M
Sbjct: 331 LCACASIASLKHGKQI-----HAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLM 385
Query: 460 PETPDFVIWGALFCACRTH 478
D V+W + A H
Sbjct: 386 GNKLDVVLWNTIISALAQH 404
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 32/149 (21%)
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGN--- 346
G+R + T+ S L CA AL G RVH ++ G + L++MYAKCG
Sbjct: 54 GLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVE 113
Query: 347 ----------------------------IEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
I+ A +F + EKD+++W M+ A G +
Sbjct: 114 ARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYW 173
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
++A++++ + G + +G F +LT C
Sbjct: 174 DEALRFYSEFRQLGIQCNGFSFAGVLTVC 202
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 23/262 (8%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H + T + + S S K +QIHA ++ N ++ + + LI S S+
Sbjct: 319 HVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIG 378
Query: 83 LSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
+FD K ++ ++N +I LA++ + I M+R +P+++T+ + + +
Sbjct: 379 RKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSH 438
Query: 142 LSLLSLG----RGLHCL--IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
L+ G + C IV S Y + + LG+ +V D+ +
Sbjct: 439 SGLVQQGLNFFESMSCDYGIVPSQEHYACLIDL--------LGRAGCFEEVMDQLEKMPY 490
Query: 196 SESVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+WN L+ C G++ RKA E + ++ ++V L + G + ++
Sbjct: 491 KPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKV 550
Query: 253 FEQMPEKGV-----VSWTAMIN 269
+ M E+ V +SW + N
Sbjct: 551 RQLMNERQVKKERAISWLEIEN 572
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 188/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y Q G A +VFD PE+N + WN ++ + + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MMP +NVASW +++ G+ + G L++A +F+ MP+K VSW AM+ +SQ G +E+ L
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G N LS CA + ALE G+++H + +G+ +G AL+ MY
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGN+E A F E +E+D+++W MI G A HG ++A++ F M + T+PD +
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC +SG V+ +++F SM D+ + +H+T +++LL R G++ +A + + MP
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD +WGAL A R H++ ++ + A +
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAE 576
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 193/418 (46%), Gaps = 24/418 (5%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
S+ +++ S + + A S+F + + +N L+ LA +S F M
Sbjct: 68 STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
VR + +TY + S A+ L+SL R L E DA + YV+ G+
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A +F+ E + V+ WN L++G + G + +A ELF MP ++V SW ++ G+
Sbjct: 180 EARGLFNSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R+GD+ +A LF+ P + V +WTA+++G++QNG E+A +F DA N + +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
++A + ++ + N + C + A ++ YA+ G +E A VF +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++W AM+ + G E+ +Q F +M G + + F +L+ C ++ +
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407
Query: 422 SM-RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ R Y + V + ++ + + G ++ A N +M E D V W + H
Sbjct: 408 RLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 133/332 (40%), Gaps = 53/332 (15%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+++ G+ A ++F P ++ S +N ++ G S G L A LF +P+ + S+
Sbjct: 48 HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
+L+ L A LF++MP EK V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW M+ + +NG E+A +F + V + + +S + G + + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRM 219
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D +V YA+ G++ A +F +D+ TWTA++ G A +G E+A
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M E + + A++ A + A F+ M +V ++
Sbjct: 276 RVFDAM----PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTG 326
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ G +++A + MP+ D V W A+ A
Sbjct: 327 YAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I MR G + A LF MP + ++ AM+ G+S NG A ++F A R ++
Sbjct: 45 ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
++ + L A A +L + + + D ++ +A G + A F
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
EKD ++W M+ +GR E+A F S TE D + A+++ G++ A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEA 212
Query: 417 LNFFDSMR--------------------------FDYFIEPSVKHHTVVVNLLSRVGQVD 450
FD M FD V T VV+ ++ G ++
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLE 272
Query: 451 KALNFINKMPETPDFVIWGALFCA 474
+A + MPE + V W A+ A
Sbjct: 273 EARRVFDAMPER-NAVSWNAMVAA 295
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 235/451 (52%), Gaps = 47/451 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +NL + ++I A+ + I F+ M P+R TY V +
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
L LL+LG+ LH +++ G+ D V L DMY + G + KVF++ PE N
Sbjct: 64 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 119
Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
V+ W +I ++ G K A+ELF M + V
Sbjct: 120 VMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 179
Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S+ SLI + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 180 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 239
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F ++ D G+ + FT S LS A +GA+ G ++H + + I AL+
Sbjct: 240 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 299
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
MY++CGNIEAA VF E +++++++WT+MI G A HG +A++ F KM+ +GT+P+
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 359
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
++A+L+AC + G + F+SM ++ I P ++H+ +V+LL R G + +A+ FIN
Sbjct: 360 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 419
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP D ++W L ACR H +T++ + A +
Sbjct: 420 MPLMADALVWRTLLGACRVHGNTELGRHAAE 450
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 188/419 (44%), Gaps = 44/419 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q+H+++I L + L+ + + S+D + +F+ N+ + +I
Sbjct: 71 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130
Query: 105 AENSHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A++ + I F M+ +RPN ++ V K+ +LS G ++ VK G+
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 190
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWN---- 203
V L MY + G+ A K FD EKN E+ LL+N
Sbjct: 191 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 250
Query: 204 -----------VLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
L++G + IG + K ++ G + K N +LI + R G+++
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ++F +M ++ V+SWT+MI GF+++G A +AL MF +ML+ G + N+ T V+ LSAC+
Sbjct: 311 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 370
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG-NIEAASLVFGETKEKDLLTW 365
VG + G + N + + G+ + +VD+ + G +EA + D L W
Sbjct: 371 VGMISEGQKHFNSMY-KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 429
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
++ +HG E ++ +M+ D ++ + +GQ K + SM+
Sbjct: 430 RTLLGACRVHGNTELG-RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 487
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI + S H N+ + + ++ + + Q+++ + + + + + LIS
Sbjct: 140 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 199
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ ++ A FD KNL +N ++ G A+N + F + + + T
Sbjct: 200 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 259
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + AS+ + G +H ++K G + + + L MY + G AF+VF+E
Sbjct: 260 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 319
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
++N V+ W +I G +K G+ +A+E+F M K N ++V+++ G +
Sbjct: 320 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 375
Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+ + F M E G+V + M++ ++G +A+ M + A+ +
Sbjct: 376 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 432
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L AC G E G I + A L +++A G + + KE++L
Sbjct: 433 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 491
Query: 363 LTWTAMIW 370
+ W
Sbjct: 492 IKEAGCSW 499
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/486 (31%), Positives = 235/486 (48%), Gaps = 47/486 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA-- 105
+QIH + L + + LIS S + ++ A +FD +N +N +I A
Sbjct: 254 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 313
Query: 106 -------------ENSHFQ------SCI--SHFVFMLRLSV------------RPNRLTY 132
E+S + +C+ HF+ + V +PN +
Sbjct: 314 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSM 373
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V ++++ L L++G+ H ++++G + D +V L DMYV+ A VFD
Sbjct: 374 TSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKN 433
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKK 248
+N + WN L++G S G A+ L M K+ ++ +W +I G+ G K+
Sbjct: 434 RN----IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 489
Query: 249 AGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
A + Q G VVSWTA+I+G SQ G +L F QM GV N ++ L
Sbjct: 490 ALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLR 549
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA + L+ G +H N F + TAL+DMY+K +++ A VF + K L +
Sbjct: 550 ACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS 609
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W MI G AI G ++AI F +M G PD F A+L+AC SG + +FDSM
Sbjct: 610 WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMI 669
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
DY I P ++H+ +V+LL R G +D+A + I+ MP PD IWGAL +CR HK+ K A
Sbjct: 670 TDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFA 729
Query: 485 KIALQS 490
+ A ++
Sbjct: 730 ETAAKN 735
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 38/330 (11%)
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V ++ + L+ + +H + + G++ D + L MY + GK A +VFD +N
Sbjct: 240 VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 299
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
S WN +I+ + +G+L A LF + D+K
Sbjct: 300 TSS----WNSMISSYAALGFLNDAWSLFYE----------------LESSDMK------- 332
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
P+ +V+W +++G +G E+ L + +M G + N ++ S L A +++G L
Sbjct: 333 --PD--IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNM 388
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G H Y+ N F +GT+L+DMY K ++ +A VF K +++ W +++ G +
Sbjct: 389 GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSF 448
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT--ACWYSGQVKLA-LNFFDSMRFDYFIEP 431
G +E A++ +M G +PD + +++ A W G+ LA L+ S+ + P
Sbjct: 449 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLG----LTP 504
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+V T +++ S+ G +L F +M +
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQ 534
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 16/302 (5%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
G +VF E K +++V + C+++ + +E+ G + K+ +V
Sbjct: 112 GSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLR 171
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+L++ + R L+KA ++F +MP + W I Q+ + +K + +F +M + ++
Sbjct: 172 CALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLK 231
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAAS 351
A T+V L AC K+GAL A ++H Y+ FGL + L+ MY+K G +E A
Sbjct: 232 AETATIVRVLQACGKMGALNAAKQIHGYVF--RFGLDSDVSLCNPLISMYSKNGKLELAR 289
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF + ++ +W +MI A G A F ++ S +PD + +L+ + G
Sbjct: 290 RVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 349
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ LN M+ + F +P+ T V+ +S +G F+N ET +V+
Sbjct: 350 YKEEVLNILQRMQGEGF-KPNSSSMTSVLQAISELG-------FLNMGKETHGYVLRNGF 401
Query: 472 FC 473
C
Sbjct: 402 DC 403
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 2/226 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF-SQNGEAEKALAMFFQMLDAGVR 293
+LI ++ GD A +F + + W + + F S G L +F ++ GV
Sbjct: 71 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ AL C +V + G+ +H + F L + AL++ Y +C +E A+ V
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E + L W I + ++ ++ F+KM +S + + + +L AC G +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
A + F + ++ V ++++ S+ G+++ A + M
Sbjct: 251 NAAKQIHGYV-FRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 188/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y Q G A +VFD PE+N + WN ++ + + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MMP +NVASW +++ G+ + G L++A +F+ MP+K VSW AM+ +SQ G +E+ L
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G N LS CA + ALE G+++H + +G+ +G AL+ MY
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGN+E A F E +E+D+++W MI G A HG ++A++ F M + T+PD +
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC +SG V+ +++F SM D+ + +H+T +++LL R G++ +A + + MP
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD +WGAL A R H++ ++ + A +
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAE 576
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 193/418 (46%), Gaps = 24/418 (5%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
S+ +++ S + + A S+F + + +N L+ LA +S F M
Sbjct: 68 STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
VR + +TY + S A+ L+SL R L E DA + YV+ G+
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A +F+ E + V+ WN L++G + G + +A ELF MP ++V SW ++ G+
Sbjct: 180 EARGLFNSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R+GD+ +A LF+ P + V +WTA+++G++QNG E+A +F DA N + +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
++A + ++ + N + C + A ++ YA+ G +E A VF +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++W AM+ + G E+ +Q F +M G + + F +L+ C ++ +
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407
Query: 422 SM-RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ R Y + V + ++ + + G ++ A N +M E D V W + H
Sbjct: 408 RLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 133/332 (40%), Gaps = 53/332 (15%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+++ G+ A ++F P ++ S +N ++ G S G L A LF +P+ + S+
Sbjct: 48 HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103
Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
+L+ L A LF++MP EK V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW M+ + +NG E+A +F + V + + +S + G + + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRM 219
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D +V YA+ G++ A +F +D+ TWTA++ G A +G E+A
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M E + + A++ A + A F+ M +V ++
Sbjct: 276 RVFDAM----PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTG 326
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ G +++A + MP+ D V W A+ A
Sbjct: 327 YAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I MR G + A LF MP + ++ AM+ G+S NG A ++F A R ++
Sbjct: 45 ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
++ + L A A +L + + + D ++ +A G + A F
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
EKD ++W M+ +GR E+A F S TE D + A+++ G++ A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEA 212
Query: 417 LNFFDSMR--------------------------FDYFIEPSVKHHTVVVNLLSRVGQVD 450
FD M FD V T VV+ ++ G ++
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLE 272
Query: 451 KALNFINKMPETPDFVIWGALFCA 474
+A + MPE + V W A+ A
Sbjct: 273 EARRVFDAMPER-NAVSWNAMVAA 295
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 252/513 (49%), Gaps = 48/513 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH QI+ F + + T L+ + I + +F+ T +N+ + +I G +N
Sbjct: 174 KKIHCQIVKVPSF-DNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKN 232
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ + F M SV N TY + + L L G+ H ++KSG+E + +
Sbjct: 233 DLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLV 292
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----G 223
L DMYV+ G A +VF+E + +++W +I G + G + +A+ LF G
Sbjct: 293 TSLLDMYVKCGDISNARRVFNEHSHVD----LVMWTAMIVGYTHNGSVNEALSLFQKMSG 348
Query: 224 MMPKKNVASWVSLIDGFMRKGDL----------------------------------KKA 249
+ K N + S++ G G+L + A
Sbjct: 349 VGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDA 408
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+FE EK +V+W ++I+GFSQNG +AL +F +M V N TV S SACA +
Sbjct: 409 KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASL 468
Query: 310 GALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
G+L G +H Y F ++ GTAL+D YAKCG+ E+A L+F +EK+ +TW+A
Sbjct: 469 GSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSA 528
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI G G + +++ F++M+ +P+ + F ++L+AC ++G V +F SM DY
Sbjct: 529 MIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDY 588
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
PS KH+T +V++L+R G++++AL+ I KMP PD +GA C H + +I
Sbjct: 589 NFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIV 648
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
++ L+L A Y DGR W +
Sbjct: 649 IKK--MLDLHPDDASYYVLVSNLYASDGR-WSQ 678
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 211/489 (43%), Gaps = 53/489 (10%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY---ALSIFDHFTPKN 93
L+ + LRQ H + + L I T+L+S L+ S Y A +FD +
Sbjct: 62 LLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVS---LYGSFGYTKDARLVFDQIPEPD 118
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+++ V++R N+ I + +++ + + + K+ + L G+ +HC
Sbjct: 119 FYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHC 178
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
IVK +D V L DMY + G+ + ++KVF++ +N V+ W +I G K
Sbjct: 179 QIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRN----VVCWTSMIAGYVKND 233
Query: 214 YLRKAVELFGMMPKKNV----------------------ASW-----------------V 234
+ + LF M + +V W
Sbjct: 234 LYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVT 293
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL+D +++ GD+ A +F + +V WTAMI G++ NG +AL++F +M G++
Sbjct: 294 SLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKP 353
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N T+ S LS C VG LE G +H +S + ALV MYAKC A VF
Sbjct: 354 NCVTIASVLSGCGLVGNLELGRSIHG-LSIKVGIWDTNVANALVHMYAKCYQNRDAKYVF 412
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
EKD++ W ++I G + +G +A+ F +M P+G ++ +AC G +
Sbjct: 413 EMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLA 472
Query: 415 LALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
+ + S++ + SV T +++ ++ G + A I E + + W A+
Sbjct: 473 IGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESA-RLIFDTIEEKNTITWSAMIG 531
Query: 474 ACRTHKDTK 482
DTK
Sbjct: 532 GYGKQGDTK 540
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 258/532 (48%), Gaps = 63/532 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H II + ++ + L+ + A +FD K+ +N +I G E+
Sbjct: 48 KQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEH 107
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
H + + F M V+PN TY + K+ ASLS L G+ +H I G+E D V
Sbjct: 108 KHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVG 167
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
L MY + G A ++FD + ++ W V+I ++ G ++A L M
Sbjct: 168 TALLRMYGKCGSINEARRIFDNL----MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223
Query: 227 ---KKNVASWVSLIDGFMRKGDLK-----------------------------KAGEL-- 252
K N ++VS+++ +G LK K+G +
Sbjct: 224 EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283
Query: 253 ----FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
F++M + VVSW MI F+++G +A +F QM G + + +S L+ACA
Sbjct: 284 ARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACAS 343
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GALE ++H + + + +GTALV MY+K G+I+ A +VF K +++++W AM
Sbjct: 344 AGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAM 403
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG + A++ F++M G +PD F+A+L+AC ++G V + + +M Y
Sbjct: 404 ISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYG 463
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
IEP V H +V+LL R G++ +A FI+ M PD WGAL +CRT+ + ++ ++
Sbjct: 464 IEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVA 523
Query: 489 QSSCSLN---------LSIPQA-------MSYCQTFMQQKG----DGRTWRE 520
+ L+ LS A +S+ +T M+++G GR+W E
Sbjct: 524 KERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIE 575
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 129/301 (42%), Gaps = 17/301 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N IT I++ S + K ++++H + L R+ T L+ + SID A
Sbjct: 227 KP-NAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDAR 285
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD +++ +NV+I AE+ F+ M +P+ + + + + AS
Sbjct: 286 VVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAG 345
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L + +H + SG+E D V L MY + G A VFD +N V+ WN
Sbjct: 346 ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRN----VVSWN 401
Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-- 257
+I+G ++ G + A+E+F M K + ++V+++ G + + + M
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461
Query: 258 ---EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
E V M++ + G +A M V ++ T + L +C G +E
Sbjct: 462 YGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNM---AVDPDEATWGALLGSCRTYGNVEL 518
Query: 315 G 315
G
Sbjct: 519 G 519
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 2/196 (1%)
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ + L G+ + F V L C K L A +VH+ I + + L+
Sbjct: 11 EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
+Y +CG ++ A VF +K +W AMI G H E A++ F++M + G +P+
Sbjct: 71 HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
++ IL AC +K +R +E V+ T ++ + + G +++A +
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHG-GLESDVRVGTALLRMYGKCGSINEARRIFDN 189
Query: 459 MPETPDFVIWGALFCA 474
+ D + W + A
Sbjct: 190 LM-NHDIISWTVMIGA 204
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 225/426 (52%), Gaps = 42/426 (9%)
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
HIFN L+ L + ++ + + MLR N T+ + K+ L G +H
Sbjct: 29 HIFNPLLGSLVNSIFPENGLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQKGLEIHAH 88
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
++KSG D F++ L Y+ G A +FD P+ + V+ W +I+G SK+G+
Sbjct: 89 LIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPD----VVSWTSIISGLSKLGF 144
Query: 215 LRKAVELFGMMP------------------------------------KKNVASWVSLID 238
++A+ F M ++NV +L+D
Sbjct: 145 EKEALSKFLSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILENALLD 204
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDF 297
++R L+ A LFE+MP++ VVSWT MI G++Q+G E+A+ +F M+ G N+
Sbjct: 205 FYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEA 264
Query: 298 TVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+V+ LSAC+ + AL G VH+YI S +D + G +G AL++MY KCGN+E A L+F
Sbjct: 265 TLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKA 324
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+ KD+++W+ +I GLA++G +QA F M+ G PD FL +L+AC + G +
Sbjct: 325 IEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQG 384
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ F++M+ Y I P ++H+ +V++ + G +D+A FI +MP + +WGAL AC+
Sbjct: 385 MMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQ 444
Query: 477 THKDTK 482
H + K
Sbjct: 445 LHGNEK 450
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 194/443 (43%), Gaps = 69/443 (15%)
Query: 2 KGHVFN----RLTTAIAPTTNI---------KSSHKPSNNITETHIISLIHSSNSTKQLR 48
K H+FN L +I P + SSH N+ T T+ + + T++
Sbjct: 27 KPHIFNPLLGSLVNSIFPENGLFLYNQMLRYPSSH---NHFTFTYALKACCFLHQTQKGL 83
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+IHA +I + I L+ L + A IFD ++ + +I GL++
Sbjct: 84 EIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLG 143
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ +S F L ++VRPN T + +SL L LG+ +H L +++ E + +
Sbjct: 144 FEKEALSKF---LSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILEN 200
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM--- 225
L D YV+ R A +F++ P+++ V+ W +I G ++ G +AV +F M
Sbjct: 201 ALLDFYVRCAYLRSAENLFEKMPKRD----VVSWTTMIGGYAQSGLCEEAVRVFQNMVHV 256
Query: 226 ----PKK----------------NVASWV------------------SLIDGFMRKGDLK 247
P + ++ WV +LI+ +++ G+++
Sbjct: 257 GEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNME 316
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A +F+ + K +VSW+ +I+G + NG ++A +F ML GV +D T + LSAC+
Sbjct: 317 MAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACS 376
Query: 308 KVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTW 365
G + G+ V + + + +VDMY K G ++ A E E + W
Sbjct: 377 HGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVW 436
Query: 366 TAMIWGLAIHG---RYEQAIQYF 385
A++ +HG +YE+ ++
Sbjct: 437 GALLHACQLHGNEKKYEKVREWL 459
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 247/500 (49%), Gaps = 24/500 (4%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQ--IILHNLFASS-RITTQLISSASLHKS 78
SH P++ + +++ + LR HA+ ++LH S+ +LI + + +
Sbjct: 6 SHLPTSGESLLRLLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSA 65
Query: 79 IDYALSIFDHFTPKNLH-----IFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLT 131
+ A ++ + +P FNVLIR L +S + + F M + P+ T
Sbjct: 66 LPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYT 125
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
YP KS ++ L LG +H + K ++ + +V MY + G+ A++VFD P
Sbjct: 126 YPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMP 185
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSLIDGFMRKG 244
++ V+ WN +I G +++G +A+E+F G MP + + G +
Sbjct: 186 HRD----VVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPD 241
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D++ +F+ M K ++SW AM+ ++ N KA+ +F M V + T+ + L
Sbjct: 242 DIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLP 301
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
C ++ A G R+H I + + AL+DMYA CG ++ A +F +D+++
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS 361
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
WT++I HG +A+ F+KM+ G EPD F+A+L AC ++G + ++FDSM
Sbjct: 362 WTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMT 421
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
Y I P +H+T +V+LL R G +++A +FI M P+ +WGAL ACR H + I
Sbjct: 422 SRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIG 481
Query: 485 KIALQSSCSLNLSIPQAMSY 504
+A + SL +P+ Y
Sbjct: 482 LVAADNLFSL---VPEQTGY 498
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 235/451 (52%), Gaps = 47/451 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +NL + ++I A+ + I F+ M P+R TY V +
Sbjct: 9 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
L LL+LG+ LH +++ G+ D V L DMY + G + KVF++ PE N
Sbjct: 69 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 124
Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
V+ W +I ++ G K A+ELF M + V
Sbjct: 125 VMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 184
Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S+ SLI + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 185 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 244
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F ++ D G+ + FT S LS A +GA+ G ++H + + I AL+
Sbjct: 245 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 304
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
MY++CGNIEAA VF E +++++++WT+MI G A HG +A++ F KM+ +GT+P+
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 364
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
++A+L+AC + G + F+SM ++ I P ++H+ +V+LL R G + +A+ FIN
Sbjct: 365 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 424
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP D ++W L ACR H +T++ + A +
Sbjct: 425 MPLMADALVWRTLLGACRVHGNTELGRHAAE 455
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 188/419 (44%), Gaps = 44/419 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q+H+++I L + L+ + + S+D + +F+ N+ + +I
Sbjct: 76 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 135
Query: 105 AENSHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A++ + I F M+ +RPN ++ V K+ +LS G ++ VK G+
Sbjct: 136 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 195
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWN---- 203
V L MY + G+ A K FD EKN E+ LL+N
Sbjct: 196 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 255
Query: 204 -----------VLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
L++G + IG + K ++ G + K N +LI + R G+++
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ++F +M ++ V+SWT+MI GF+++G A +AL MF +ML+ G + N+ T V+ LSAC+
Sbjct: 316 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 375
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG-NIEAASLVFGETKEKDLLTW 365
VG + G + N + + G+ + +VD+ + G +EA + D L W
Sbjct: 376 VGMISEGQKHFNSMY-KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 434
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
++ +HG E ++ +M+ D ++ + +GQ K + SM+
Sbjct: 435 RTLLGACRVHGNTELG-RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 492
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI + S H N+ + + ++ + + Q+++ + + + + + LIS
Sbjct: 145 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 204
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ ++ A FD KNL +N ++ G A+N + F + + + T
Sbjct: 205 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 264
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + AS+ + G +H ++K G + + + L MY + G AF+VF+E
Sbjct: 265 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 324
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
++N V+ W +I G +K G+ +A+E+F M K N ++V+++ G +
Sbjct: 325 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 380
Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+ + F M E G+V + M++ ++G +A+ M + A+ +
Sbjct: 381 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 437
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L AC G E G I + A L +++A G + + KE++L
Sbjct: 438 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 496
Query: 363 LTWTAMIW 370
+ W
Sbjct: 497 IKEAGCSW 504
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 239/473 (50%), Gaps = 41/473 (8%)
Query: 56 LHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
LH+ + I++ I SL ++ AL IF+ N+ ++N+++ + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
F M +RPN+ TYP + ++ + LG +H L VK+G E D +V
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385
Query: 170 LADMYVQLGKTRGAFKVFDETPEKN-------------------------KSESVLLW-- 202
L DMY + G A +V + EK+ + + +W
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445
Query: 203 NV----LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
N+ I+GC+ I +R+ +++ + +V+ W +L++ + R G +++A FE
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M K ++ +++GF+Q+G E+AL +F +M +GV+ N FT VSALSA A + ++
Sbjct: 506 EMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G ++H + + +G AL+ +Y KCG+ E A + F E E++ ++W +I +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HGR +A+ F +M G +P+ F+ +L AC + G V+ L++F SM +Y I P
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
H+ V+++ R GQ+D+A FI +MP D ++W L AC+ HK+ ++ + A
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFA 738
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/494 (26%), Positives = 224/494 (45%), Gaps = 51/494 (10%)
Query: 29 ITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
+ +++S + SS + +L R IHAQ H + + +I+ S A
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F ++ FN LI G A+ H + + F M + P+ +T + + ASL
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G LH + K+G+ D + L D+YV+ G A +F+ + N V+LWN+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN----VVLWNL 315
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS-------------------------------- 232
++ +I L K+ ELF M +
Sbjct: 316 MLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG 375
Query: 233 -----WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+VS LID + + G L+KA + E + EK VVSWT+MI G+ Q+ + ALA F
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M G+ ++ + SA+S CA + A+ G+++H I + + +I ALV++YA+CG
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCG 495
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
I A F E + KD +T ++ G A G +E+A++ F +M SG + + F++ L+
Sbjct: 496 RIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555
Query: 406 ACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
A ++K ++ + E V + +++L + G + A ++M E +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMSERNE 613
Query: 465 FVIWGALFCACRTH 478
V W + +C H
Sbjct: 614 -VSWNTIITSCSQH 626
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 189/450 (42%), Gaps = 44/450 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
+IHA+ + L + LI S + + A +F+ + ++ + ++ G A+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + + M R V P V S L + GR +H K G + FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-------------------- 208
+ +Y++ G R A +VF + P ++ + +N LI+G
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRD----TVTFNTLISGHAQCGHGEHALEIFEEMQFS 238
Query: 209 ---------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKA 249
C+ +G L+K +L + K ++S SL+D +++ GD++ A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F VV W M+ F Q + K+ +F QM AG+R N FT L C
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
++ G ++H+ F + L+DMY+K G +E A V KEKD+++WT+MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G H + A+ FK+M G PD + ++ C ++ L + +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY- 477
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
V +VNL +R G++ +A + +M
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEM 507
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 12/244 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + G + A +FE++ + VSW AM++G++QNG E+AL ++ QM AGV
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ + S LS+C K G +H + F + +G A++ +Y +CG+ A VF
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ +D +T+ +I G A G E A++ F++M +SG PD ++L AC G ++
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 416 ALN-----FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
F + DY +E S +++L + G V+ AL N T + V+W
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGS------LLDLYVKCGDVETALVIFNSSDRT-NVVLWNL 315
Query: 471 LFCA 474
+ A
Sbjct: 316 MLVA 319
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 181/403 (44%), Gaps = 58/403 (14%)
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H V G+ V L D+Y + G A +VF+E ++ + W +++G +
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDN----VSWVAMLSGYA 119
Query: 211 KIGYLRKAVELF------GMMPKKNVASWV------------------------------ 234
+ G +A+ L+ G++P V S V
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
++I ++R G + A +F MP + V++ +I+G +Q G E AL +F +M +G
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNI 347
+ + T+ S L+ACA +G L+ G ++H+Y+ +D+ ++G +L+D+Y KCG++
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG----SLLDLYVKCGDV 295
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A ++F + +++ W M+ ++ + F +M +G P+ + IL C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ ++ L S+ E + V++++ S+ G ++KA + + E D V
Sbjct: 356 TCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVS 413
Query: 468 WGALFCACRTHKDTKIAKIALQS--SCSL---NLSIPQAMSYC 505
W ++ H+ K A A + C + N+ + A+S C
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 138/313 (44%), Gaps = 26/313 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+NI IS N+ +Q QIHA+I + I L++ + I A S F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K+ N L+ G A++ + + F+ M + V+ N T+ + A+L+ +
Sbjct: 505 EEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H ++K+G ++ V L +Y + G A F E E+N+ + WN +I
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE----VSWNTII 620
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
CS+ G +A++LF M K+ N +++ ++ G +++ F+ M ++ +
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680
Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ +I+ F + G+ ++A +M + A+ + LSAC +
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEM---PIAADAMVWRTLLSAC----------K 727
Query: 318 VHNYISCNDFGLK 330
VH I +F K
Sbjct: 728 VHKNIEVGEFAAK 740
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGAL- 312
M +G S + GF + + K L++F G+ DF AL AC G
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRW 58
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+ +H G +G L+D+Y+K G + A VF E +D ++W AM+ G
Sbjct: 59 QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A +G E+A+ +++M +G P V ++L++C
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 208/396 (52%), Gaps = 32/396 (8%)
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
P+++ + + LIR L+ ++ + + +LR + P T P + KS+A LS G
Sbjct: 34 PRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMA-LSPAVPGAA 92
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN-GC 209
+ L V + V+LG R VL+ N LI
Sbjct: 93 VLALTVHTHA--------------VKLGLDR----------------FVLVSNALIRVHA 122
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+G L + L + +++ +LI + R G L A LF++MP + VSW+AM+N
Sbjct: 123 GFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVN 182
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+ Q G+ +AL +F +M VR +D +V L+ACA+ GALE G VH Y+ + +
Sbjct: 183 GYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKI 242
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
GTALVDMY+KCG ++ A VF + K++L WT MI GLA+HGR +A+ F +M
Sbjct: 243 NLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQME 302
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
SG PD F+ +L AC ++G V FDSM Y I+P ++H+ +V+LL+R G +
Sbjct: 303 SSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFL 362
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+A I KMP PD +IWGAL CR HK+ + A+
Sbjct: 363 YEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAE 398
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 13/228 (5%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LI++ + + A ++FD +N ++ ++ G + + + F M VRP+
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPD 208
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
V + A L G+ +H + G++ + F L DMY + G+ + A VF+
Sbjct: 209 DTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFE 268
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
KN VL W +I G + G +AV LF M + +++ ++ G
Sbjct: 269 RMQYKN----VLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324
Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
+ K ELF+ M K + + M++ ++NG +A M +M
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKM 372
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/242 (18%), Positives = 100/242 (41%), Gaps = 8/242 (3%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
+P + + +++ + +Q + +H + H + + T L+ S + A+
Sbjct: 206 RPDDTVL-VGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAM 264
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F+ KN+ + +I+GLA + + F M +RP+ + + V +
Sbjct: 265 DVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324
Query: 144 LLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L+ GR L ++ K G++ + D+ + G A ++ + P + + L+W
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDA---LIW 381
Query: 203 NVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ GC + + + + ++ ++V L + + G A E+ M EK
Sbjct: 382 GALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREK 441
Query: 260 GV 261
GV
Sbjct: 442 GV 443
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 218/411 (53%), Gaps = 12/411 (2%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A +FD T + +N L+ G + S + F M + V +++ +
Sbjct: 247 IQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSG 302
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A ++ R L + D F + Y Q G A +VFD P+KN
Sbjct: 303 YARRGDMAEARRLFDVAPIR----DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN---- 354
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WN ++ + + +A ELF MP +NVASW +++ G+ + G L +A +F MP+
Sbjct: 355 AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ 414
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
K VSW AM+ +SQ G +E+ L +F +M G N LS CA + ALE G+++
Sbjct: 415 KDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 474
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H+ + +G+ +G AL+ MY KCG++E A F E +E+D+++W MI G A HG
Sbjct: 475 HSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFG 534
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++A++ F M + T+PD + +L AC +SG V+ +++F SM D+ + +H+T
Sbjct: 535 KEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTC 594
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+++LL R G++D+A+N + MP PD +WGAL A R H+++++ + A +
Sbjct: 595 MIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAE 645
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 164/353 (46%), Gaps = 43/353 (12%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F ++ +N ++ G A N +S F R RP+ +Y + ++
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF----RSIPRPDSFSYNTLLHALGV 181
Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVH--------------------------LADMY 174
S L+ R L + VK V Y+ + H + Y
Sbjct: 182 SSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY 241
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+ G+ + A ++FD E + + WN L+ G + + +A ++F MP+++V SW
Sbjct: 242 VRNGRIQEARELFDSRTEWD----AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWN 297
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+++ G+ R+GD+ +A LF+ P + V +WTA+++G++QNG E+A +F M D
Sbjct: 298 TMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD----K 353
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N + + ++A + +E + + + C + A ++ YA+ G ++ A +F
Sbjct: 354 NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIF 409
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
G +KD ++W AM+ + G E+ +Q FK+M G + + F +L+ C
Sbjct: 410 GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTC 462
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 136/332 (40%), Gaps = 53/332 (15%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+++ G+ A ++F P ++ S +N ++ G + G L +A+ F +P+ + S+
Sbjct: 117 HMRAGRVPDAERLFAAMPRRSTS----TYNTMLAGYAANGRLPQALSFFRSIPRPDSFSY 172
Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
+L+ L LF++MP EK V
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAV 232
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW M+ + +NG ++A +F D+ + + + ++ + +E ++ N +
Sbjct: 233 SWNGMLAAYVRNGRIQEARELF----DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM 288
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
D +V YA+ G++ A +F +D+ TWTA++ G A +G E+A
Sbjct: 289 PQRDV----VSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAK 344
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M + + + A++ A ++ A FD+M +V ++
Sbjct: 345 RVFDAM----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTG 395
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ G +D+A MP+ D V W A+ A
Sbjct: 396 YAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
P V I MR G + A LF MP + ++ M+ G++ NG +AL+ F
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162
Query: 286 QMLDAGVRANDF---TVVSAL---SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
+ R + F T++ AL S+ A V AL + V + +S N ++
Sbjct: 163 SI----PRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYN----------VMIS 208
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
+A G + A F EKD ++W M+ +GR ++A + F S TE D
Sbjct: 209 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAIS 264
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+ A++ Q++ A F+ M + V +V+ +R G + +A +
Sbjct: 265 WNALMAGYVQRSQIEEAQKMFNKM-----PQRDVVSWNTMVSGYARRGDMAEARRLFDVA 319
Query: 460 PETPDFVIWGAL 471
P D W A+
Sbjct: 320 P-IRDVFTWTAI 330
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 208/398 (52%), Gaps = 35/398 (8%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+R V PN T+P + K + + G +H I+K G E D FVR L MY G+
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A +F E ++ WN +I+G K G + A ELF MP++++ SW S+I G
Sbjct: 61 IGDARAMF----EVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAG 116
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ-----------ML 288
++ GD+ A +LF +MP + +VSW MI+G++Q E A +F ML
Sbjct: 117 YVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIML 176
Query: 289 DAGVRANDF-------------------TVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
VR D+ T+VS L+ACA +G L+ G +H+YI N
Sbjct: 177 ALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIE 236
Query: 330 KGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ TAL+ MYAKCG ++ A VF + + +++W +MI G +HG+ ++A++ F M
Sbjct: 237 PDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 296
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ F+ +L+AC +SG + +FD MR Y IEP V+H+ +V+LL R G
Sbjct: 297 EKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGL 356
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ I KMP +WGAL ACRTH ++++A+I
Sbjct: 357 MKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEI 394
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 227/453 (50%), Gaps = 19/453 (4%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++HA ++ + + + + L+S + + +A +FD N+ + LI A
Sbjct: 47 KKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARC 106
Query: 108 SHFQSCISHFVFMLRL-SVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ ++ F M + + PN + P V K+ + G +H I+K E D+F
Sbjct: 107 GFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSF 166
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V L MY + K A KVFD K+ + N ++ G + G +A+ L M
Sbjct: 167 VSSSLIVMYSKCAKVEDARKVFDGMTVKD----TVALNAVVAGYVQQGAANEALGLVESM 222
Query: 226 P----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEA 277
K NV +W SLI GF +KGD + E+F M GV VSWT++I+GF QN
Sbjct: 223 KLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRN 282
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GT 335
++A F QML G T+ + L ACA + G +H Y G++G I +
Sbjct: 283 KEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVT--GVEGDIYVRS 340
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
ALVDMYAKCG I A +F EK+ +TW ++I+G A HG E+AI+ F +M G
Sbjct: 341 ALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAK 400
Query: 396 -DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
D F A LTAC + G +L F M+ Y IEP ++H+ +V+LL R G++ +A
Sbjct: 401 LDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYC 460
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I MP PD +WGAL ACR H+ ++A++A
Sbjct: 461 MIKTMPIEPDLFVWGALLAACRNHRHVELAEVA 493
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 146/375 (38%), Gaps = 78/375 (20%)
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L G+ LH +V +G V +L Y G+ A K+FD+ P N V W
Sbjct: 43 LHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTN----VRRWIA 98
Query: 205 LINGCSKIGYLRKAVELF-------GMMPKK----------------------------- 228
LI C++ G+ A+ +F G+ P
Sbjct: 99 LIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILK 158
Query: 229 ---NVASWV--SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+ S+V SLI + + ++ A ++F+ M K V+ A++ G+ Q G A +AL +
Sbjct: 159 CSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGL 218
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
M G++ N T S +S F KG G
Sbjct: 219 VESMKLMGLKPNVVTWNSLISG---------------------FSQKGDQGRV------- 250
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
E L+ + E D+++WT++I G + R ++A FK+M+ G P A+
Sbjct: 251 ---SEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISAL 307
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L AC + +V + +E + + +V++ ++ G + +A N ++MPE
Sbjct: 308 LPACATAARVSVGRE-IHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEK- 365
Query: 464 DFVIWGALFCACRTH 478
+ V W ++ H
Sbjct: 366 NTVTWNSIIFGFANH 380
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ AL AG ++H ++ N F + + LV Y CG + A +F + ++ W
Sbjct: 38 ARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWI 97
Query: 367 AMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGT-VFLAILTACWYSGQ 412
A+I A G Y+ A+ F +M G P+ V ++L AC + G
Sbjct: 98 ALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGD 145
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 192/331 (58%), Gaps = 9/331 (2%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
Q+ K R F + P KN V+ WN +I+G + G L A++LF P K+V +W +
Sbjct: 84 QMDKARDLFLIM---PTKN----VVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTA 136
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
+I G+M+ G + A LFE+MPEK +V+W AMI G+ +N AE + +F M+ G++ N
Sbjct: 137 MITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPN 196
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T+ SAL C+++ AL+ G +VH + + GT+L+ MY KCG +E +F
Sbjct: 197 SSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFV 256
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ +D++TW AMI G A HG ++A+ F +M+ G +PD F+A+L AC ++G L
Sbjct: 257 QVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDL 316
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ +F SM DY + H+T +V+LL R G++ +A++ I KMP P ++G L AC
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGAC 376
Query: 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506
R HK+T++A+ A Q LNL A Y Q
Sbjct: 377 RIHKNTEMAEFASQK--LLNLDPASATGYVQ 405
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 13/290 (4%)
Query: 197 ESVLLWNVLINGCSKI-GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ + WN ++ G SK G L++A ELF +P+ + S+ +++ ++R ++++A FE
Sbjct: 4 KTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFED 63
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K SW MI GF+QN + +KA +F M V T + +S + G L++
Sbjct: 64 MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDLDSA 119
Query: 316 VRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
+++ K + TA++ Y K G I A +F + EK+L+TW AMI G
Sbjct: 120 LKLFEKAP-----FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIE 174
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
+ R E ++ F+ M+ G +P+ + + L C ++L + + +
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTA 234
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
T ++++ + G ++ ++P D V W A+ H + K A
Sbjct: 235 -GTSLISMYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKA 282
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
F S T +I+ I A +F+ KNL +N +I G EN + + F
Sbjct: 128 FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+ ++PN T + LS L LGR +H L+ KS + D L MY + G
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
+K+F + P ++ V+ WN +I+G ++ G +KA+ LF M +K + W++ +
Sbjct: 248 LEDGWKLFVQVPRRD----VVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVA 303
Query: 239 GFM 241
M
Sbjct: 304 VLM 306
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 229/430 (53%), Gaps = 46/430 (10%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV IR A +S + + F+ MLR ++RP+ T PF+ + A SL R H L+
Sbjct: 121 YNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLG 179
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+ L MY L A KVFD P ++ V+ WN ++ ++G
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRD----VVSWNAMMKAYGRVGMNG 235
Query: 217 KAVELFGMMPKKNVAS-----------------------WV-----------------SL 236
+ +F M K+ + WV +L
Sbjct: 236 EVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSAL 295
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G++ +A +F+ + +K +V+W AMI G++QNG + +A+++F M AG+R +
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+ LSAC+ VGALE G + Y S +GTALVDMYAKCG+++ A VF +
Sbjct: 356 ITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRK 415
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKL 415
K++ +W A+I GLA +GR ++AIQ+F+ M G +PD F+ +L+AC ++G VK
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+F+S+ ++ I P ++H++ +V+LL+R G +++A +FI K+P+ D V+ GAL AC
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAAC 535
Query: 476 RTHKDTKIAK 485
R K+ +I +
Sbjct: 536 RKCKNVEIGE 545
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 237/503 (47%), Gaps = 50/503 (9%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYA 82
KP+ N H++ + SN L+Q+ A + + +LI +L S + YA
Sbjct: 2 KPNLN---EHVLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYA 58
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAEN-SHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVA 140
IFDH N H+F +I A + + S +S F MLR RPN +P K+
Sbjct: 59 RLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCP 118
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKTRGAFKVFDETPEKNKSESV 199
LH IVKSG V+ L D Y ++ G A KVFDE
Sbjct: 119 ESCA---AESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDE---------- 165
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
M ++V S+ +++ GF R GD++ A +F +M ++
Sbjct: 166 -------------------------MSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDR 200
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
V SW A+I G +QNG + + +F +M+ R N TVV ALSAC +G L+ G +H
Sbjct: 201 DVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIH 260
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
Y+ N + ALVDMY KCG++ A VF EK L +W +MI A+HG+ +
Sbjct: 261 GYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSD 320
Query: 380 QAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
AI F++M+ G PD F+ +L AC + G V+ +F+ M +Y IEP ++H+
Sbjct: 321 SAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYG 380
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+++LL R G+ D+A++ + M PD V+WG+L C+ H T +A+ A + ++
Sbjct: 381 CLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEID-- 438
Query: 498 IPQAMSYCQTFMQQKGDGRTWRE 520
P Y G+ W E
Sbjct: 439 -PHNGGYRIMLANVYGELGKWDE 460
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 229/430 (53%), Gaps = 46/430 (10%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV IR A +S + + F+ MLR ++RP+ T PF+ + A SL R H L+
Sbjct: 121 YNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLG 179
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+ L MY L A KVFD P ++ V+ WN ++ ++G
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRD----VVSWNAMMKAYGRVGMNG 235
Query: 217 KAVELFGMMPKKNVAS-----------------------WV-----------------SL 236
+ +F M K+ + WV +L
Sbjct: 236 EVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSAL 295
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G++ +A +F+ + +K +V+W AMI G++QNG + +A+++F M AG+R +
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+ LSAC+ VGALE G + Y S +GTALVDMYAKCG+++ A VF +
Sbjct: 356 ITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRK 415
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKL 415
K++ +W A+I GLA +GR ++AIQ+F+ M G +PD F+ +L+AC ++G VK
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+F+S+ ++ I P ++H++ +V+LL+R G +++A +FI K+P+ D V+ GAL AC
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAAC 535
Query: 476 RTHKDTKIAK 485
R K+ +I +
Sbjct: 536 RKCKNVEIGE 545
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 258/500 (51%), Gaps = 15/500 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA +++ L
Sbjct: 226 MVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGL 285
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+ A IFD K++ +N+LI G + + I
Sbjct: 286 ELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQS 345
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M +++ + +T + + A LG+ + ++ +E D + DMY + G
Sbjct: 346 MRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGS 405
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A KVFD T +K+ ++LWN L+ ++ G +A+ LF M + NV +W
Sbjct: 406 IVDAKKVFDSTVQKD----LILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNL 461
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G+ VSWT M+NG QNG +E+A+ +M ++G
Sbjct: 462 IILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESG 521
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAA 350
+R N F++ ALSACA + +L G +H YI N +I T+LVDMYAKCG+I A
Sbjct: 522 LRPNVFSITVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLVDMYAKCGDINKA 581
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +L + AMI G A++G ++AI ++ + G +PD F ++L+AC ++
Sbjct: 582 ERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPDSITFTSLLSACNHA 641
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + A F M + ++P ++H+ ++V+LL+ G+ DKAL + +MP PD + +
Sbjct: 642 GDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQS 701
Query: 471 LFCAC-RTHKDTKIAKIALQ 489
LF C + HKD + ++ Q
Sbjct: 702 LFATCKKQHKDELVEYLSRQ 721
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 211/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 70 KQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKC 129
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H +VK+G F
Sbjct: 130 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVF 189
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ LF M
Sbjct: 190 VASSLADMYGKCGVLDEARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLFSDM 245
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ V + +++++G + + G +
Sbjct: 246 RKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLI 305
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 306 ECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAA 365
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ + G V +Y + + + VDMYAKCG+I A VF T +KDL+ W
Sbjct: 366 ARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWN 425
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 426 TLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSS 485
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 486 GII-PNLVSWTTMMNGLVQNGCSEEAILFLRKMQES 520
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 2/240 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL D + + G L +A ++F+++PE+ VV+W A++ G+ QNG E+A+ +F M GV
Sbjct: 193 SLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEP 252
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
TV + LSA A +G +E G + H N L +GT++++ Y K G IE A ++F
Sbjct: 253 TRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIF 312
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
EKD++TW +I G G E AI+ + M + D +++A + K
Sbjct: 313 DRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSK 372
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L S + +E + + V++ ++ G + A + + D ++W L A
Sbjct: 373 LGKE-VQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQ-KDLILWNTLLGA 430
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 150/537 (27%), Positives = 265/537 (49%), Gaps = 48/537 (8%)
Query: 1 MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+KG+ N L TA+A ++ T+++ + + K+ ++IH Q+I ++
Sbjct: 119 LKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
A+ T +++ + + ID A +FD ++L +N +I G ++N + + +
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M RP+ +T V + A + LL +G+ +H +++G + LADMY + G
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
A +FD +K +V+ WN +++G + G KA+ +F M ++ + + V++++
Sbjct: 299 VETARLIFDGMDQK----TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354
Query: 239 GF---MRKGDLKK-----------------------------------AGELFEQMPEKG 260
GDL++ A ++F + +
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VSW AMI G++QNG +AL F +M G++ + FT+VS + A A++ +H
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474
Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
I SC D + + TALVDMY+KCG I A +F ++ ++TW AMI G HG
Sbjct: 475 LIIRSCLDKNI--FVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
A+ F KM EP+ +L++++AC +SG V L F SM+ DY +EPS+ H+
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL R G++ +A +FI MP +P ++GA AC+ HK+ ++ + A + LN
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELN 649
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/481 (25%), Positives = 229/481 (47%), Gaps = 45/481 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ S K+L QI +I + L+ T+L+S S + SI+ A +F+ K +
Sbjct: 55 LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
++ +++G A+NS ++ ++ M V+P + ++ K + L G+ +H ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ + F + +MY + + A+K+FD PE++ ++ WN +I G S+ G+ +
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD----LVSWNTIIAGFSQNGFAK 230
Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
KA+EL G P K V +L
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G ++ A +F+ M +K VVSW +M++G+ QNGE EKA+A+F +ML+ G+
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T++ AL ACA +G LE G VH ++ + G ++ +L+ MY+KC ++ AS +F
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ ++W AMI G A +GR +A+ F +M G +PD ++++ A + A
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA- 469
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ + ++ ++ T +V++ S+ G + A + M + W A+ T
Sbjct: 470 KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGT 528
Query: 478 H 478
H
Sbjct: 529 H 529
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 111/260 (42%), Gaps = 11/260 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R++ A+ + +KS ++ T +I + + T+ + IH II L + +TT
Sbjct: 430 RVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTT 489
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ S +I A +FD + +++ +N +I G + ++ + F M + +V P
Sbjct: 490 ALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEP 549
Query: 128 NRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
N +TY V + + L+ G R + G+E + D+ + G+ + A+
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDF 609
Query: 187 FDETPEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
+ P S + ++ C ++G + A +LF + P + V L + +
Sbjct: 610 IENMP---ISPGITVYGAXXGACKIHKNIEVGE-KAAKKLFELNPDEG-GYHVLLANIYA 664
Query: 242 RKGDLKKAGELFEQMPEKGV 261
K E+ + M +KG+
Sbjct: 665 STSKWSKVAEVRKTMEKKGL 684
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 188/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y Q G A +VFD PE+N + WN ++ + + +A ELF
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 184
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MMP +NVASW +++ G+ + G L++A +F+ MP+K VSW AM+ +SQ G +E+ L
Sbjct: 185 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M G N LS CA + ALE G+++H + +G+ +G AL+ MY
Sbjct: 245 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 304
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGN+E A F E +E+D+++W MI G A HG ++A++ F M + T+PD +
Sbjct: 305 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 364
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC +SG V+ +++F SM D+ + +H+T +++LL R G++ +A + + MP
Sbjct: 365 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 424
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD +WGAL A R H++ ++ + A +
Sbjct: 425 PDSTMWGALLGASRIHRNPELGRSAAE 451
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 167/352 (47%), Gaps = 20/352 (5%)
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +TY + S A+ L+SL R L E DA + YV+ G+ A +F
Sbjct: 5 DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ E + V+ WN L++G + G + +A ELF MP ++V SW ++ G+ R+GD+
Sbjct: 61 NSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 116
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A LF+ P + V +WTA+++G++QNG E+A +F DA N + + ++A
Sbjct: 117 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYI 172
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ ++ + N + C + A ++ YA+ G +E A VF +KD ++W A
Sbjct: 173 QRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 228
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-RFD 426
M+ + G E+ +Q F +M G + + F +L+ C ++ + + R
Sbjct: 229 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 288
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
Y + V + ++ + + G ++ A N +M E D V W + H
Sbjct: 289 YGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARH 337
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 18/250 (7%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP ++ ++ +I G + A F+ PEK VSW M+ + +NG E+A +F
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ V + + +S + G + + + + D +V YA+
Sbjct: 61 NSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARR 112
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++ A +F +D+ TWTA++ G A +G E+A + F M E + + A++
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMV 168
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
A + A F+ M +V ++ ++ G +++A + MP+ D
Sbjct: 169 AAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-D 222
Query: 465 FVIWGALFCA 474
V W A+ A
Sbjct: 223 AVSWAAMLAA 232
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A ++FD K+ + ++ ++ + + F+ M R NR + V +
Sbjct: 208 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 267
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A ++ L G LH ++++G FV L MY + G A F+E E++
Sbjct: 268 CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERD---- 323
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM 225
V+ WN +I G ++ G+ ++A+E+F MM
Sbjct: 324 VVSWNTMIAGYARHGFGKEALEIFDMM 350
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 230/447 (51%), Gaps = 43/447 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A+S+F+ ++ +N +I G + H + + M R + PN T K+ A
Sbjct: 312 AISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAG 371
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ L LGR LH ++K +E D FV V L DMY + A F+ PEK+ ++
Sbjct: 372 MGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD----LIA 427
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA------SWV--------------------- 234
WN +I+G S+ +A+ LF M K+ + S +
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487
Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
SLID + + ++ A +FE+ +VS+T+MI ++Q G+ E+AL
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M D ++ + F S L+ACA + A E G ++H +I F L G +LV+MYA
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYA 607
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I+ A F E E+ +++W+AMI GLA HG QA+Q F +M+ G P+ ++
Sbjct: 608 KCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVS 667
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC ++G V A +F+SM + +P +H+ +++LL R G++++A+ +NKMP
Sbjct: 668 VLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFE 727
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +WGAL A R HKD ++ + A +
Sbjct: 728 ANASVWGALLGAARIHKDVELGRRAAE 754
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 199/423 (47%), Gaps = 48/423 (11%)
Query: 28 NITETHII--SLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
N T T + L+ +TK LR QIHA I L I LI+ S ++ YA
Sbjct: 51 NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+ D + +L ++ LI G A+N + F M L V+ N T+ V K+ + +
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L +G+ +H ++V SG E D FV L MY + + + ++FDE PE+N V+ W
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERN----VVSW 226
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKK-NVASWV--------------------- 234
N L + +I + +AV LF G+ P + +++S V
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286
Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
+L+D + + GDL A +FE++ + +VSW A+I G + E+AL +
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
QM +G+ N FT+ SAL ACA +G E G ++H+ + D + LVDMY+K
Sbjct: 347 LGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSK 406
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
C +E A + F EKDL+ W A+I G + + +A+ F +M G + T I
Sbjct: 407 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 466
Query: 404 LTA 406
L +
Sbjct: 467 LKS 469
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 179/385 (46%), Gaps = 47/385 (12%)
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P ++Y + + L G +H I KSG+ D +R HL ++Y + A K+
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113
Query: 187 FDETPEKNKSESVLLWNVLING-----------------------------------CSK 211
DE+ E + ++ W+ LI+G CS
Sbjct: 114 VDESSEPD----LVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169
Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+ LR ++ G++ + +V +L+ + + + + LF+++PE+ VVSW A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
+ + Q +A+ +F++M+ +G++ N+F++ S ++AC + G +H Y+ +
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
ALVDMYAK G++ A VF + K+ D+++W A+I G +H +EQA++ +
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRV 446
M SG P+ + L AC G +L S M+ D +E + +V++ S+
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD--MESDLFVSVGLVDMYSKC 407
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
++ A N +PE D + W A+
Sbjct: 408 DLLEDARMAFNLLPEK-DLIAWNAI 431
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 38/397 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H+ ++ ++ + ++ L+ S ++ A F+ K+L +N +I G ++
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 438
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+S FV M + + N+ T + KS A L ++ + R +H L VKSG D +V
Sbjct: 439 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 498
Query: 168 VHLAD-------------------------------MYVQLGKTRGAFKVFDETPEKNKS 196
L D Y Q G+ A K+F E +
Sbjct: 499 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 558
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
+ + L+N C+ + + +L + K ++ + SL++ + + G + AG
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 618
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F ++ E+G+VSW+AMI G +Q+G +AL +F QML GV N T+VS L AC G +
Sbjct: 619 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 678
Query: 313 -EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIW 370
EA + + F ++D+ + G I EA LV E + W A++
Sbjct: 679 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 738
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA 406
IH E + + + E GT V LA + A
Sbjct: 739 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYA 775
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 143/285 (50%), Gaps = 12/285 (4%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFEQMP 257
++ L++ C LR +++ + K ++ S LI+ + + + A +L ++
Sbjct: 59 YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESS 118
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
E +VSW+A+I+G++QNG AL F +M GV+ N+FT S L AC+ V L G +
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
VH + + F + LV MYAKC + +F E E+++++W A+
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTAC---WYSGQVKLALNFFDSMRFDYFIEPSVK 434
+A+ F +M+ SG +P+ +++ AC S + K+ + + +D+ +P
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW--DPFSA 296
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
+ +V++ ++VG + A++ K+ + PD V W A+ C H+
Sbjct: 297 N--ALVDMYAKVGDLADAISVFEKIKQ-PDIVSWNAVIAGCVLHE 338
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 11/243 (4%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSI 79
HK +T + +++ S+ + + RQ+H + + + LI S +
Sbjct: 452 HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHV 511
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+ A IF+ T +L F +I A+ + + F+ M + ++P+R + +
Sbjct: 512 EDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 571
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A+LS G+ LH I+K G D F L +MY + G A + F E E+ +
Sbjct: 572 ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG----I 627
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQ 255
+ W+ +I G ++ G+ R+A++LF M K+ V+ + VS++ G + +A FE
Sbjct: 628 VSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFES 687
Query: 256 MPE 258
M E
Sbjct: 688 MEE 690
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 229/430 (53%), Gaps = 46/430 (10%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV IR A +S + + F+ MLR ++RP+ T PF+ + A SL R H L+
Sbjct: 121 YNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLG 179
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K G+ L MY L A KVFD P ++ V+ WN ++ ++G
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRD----VVSWNAMMKAYGRVGMNG 235
Query: 217 KAVELFGMMPKKNVAS-----------------------WV-----------------SL 236
+ +F M K+ + WV +L
Sbjct: 236 EVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSAL 295
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G++ +A +F+ + +K +V+W AMI G++QNG + +A+++F M AG+R +
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+ LSAC+ VGALE G + Y S +GTALVDMYAKCG+++ A VF +
Sbjct: 356 ITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRK 415
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKL 415
K++ +W A+I GLA +GR ++AIQ+F+ M G +PD F+ +L+AC ++G VK
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+F+S+ ++ I P ++H++ +V+LL+R G +++A +FI K+P+ D V+ GAL AC
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAAC 535
Query: 476 RTHKDTKIAK 485
R K+ +I +
Sbjct: 536 RKCKNVEIGE 545
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/500 (29%), Positives = 260/500 (52%), Gaps = 24/500 (4%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ L
Sbjct: 226 MVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGL 285
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA +FD K++ +N+LI G + Q + ++
Sbjct: 286 ELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQ----QGLVEDAIY 341
Query: 120 MLRLSVRPNRLTYPFVSKSV-----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M +L +R +L Y V+ S A L G+ + C ++ ++ D + DMY
Sbjct: 342 MSQL-MRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMY 400
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNV 230
+ G A KVFD T EK+ ++LWN L+ ++ G +A+ LF M NV
Sbjct: 401 AKCGSIVDAKKVFDSTVEKD----LILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNV 456
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQ 286
+W +I +R G++ +A E+F QM G+ +SWT M+NG QNG +E+A+ +
Sbjct: 457 ITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRK 516
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCG 345
M ++G+R N F++ ALSA A + +L G +H YI N +I T+LVDMYAKCG
Sbjct: 517 MQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCG 576
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I A VFG +L + AMI A++G ++AI ++ + G +PD F ++L+
Sbjct: 577 DINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPDSVTFTSLLS 636
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G + A+ F +M + + P ++H+ ++V+LL+ G+ +KA+ I +MP PD
Sbjct: 637 ACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKAIRLIEEMPYKPDA 696
Query: 466 VIWGALFCACRTHKDTKIAK 485
+ +L +C T++ +
Sbjct: 697 RMIQSLVASCNKQHKTELVE 716
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A IF +N+ + +I
Sbjct: 70 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKC 129
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H ++K+G+E F
Sbjct: 130 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVF 189
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ LF M
Sbjct: 190 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLFSDM 245
Query: 226 PKKNV--------------ASWV-------------------------SLIDGFMRKGDL 246
K+ V A+ V SL++ + + G +
Sbjct: 246 RKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLI 305
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M +K VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 306 EYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAA 365
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + + + +DMYAKCG+I A VF T EKDL+ W
Sbjct: 366 ARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWN 425
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M P+ + I+ + +G+V A F M+
Sbjct: 426 TLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQ-S 484
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N + + G ++A+ F+ KM E+
Sbjct: 485 SGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQES 520
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 130 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVF 189
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ +F M G
Sbjct: 190 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEG 249
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V TV + LSA A + +E G + H N L +GT+L++ Y K G IE A
Sbjct: 250 VEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 309
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+VF +KD++TW +I G G E AI + M + D +++A +
Sbjct: 310 MVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTE 369
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+K + ++ + + +++ ++ G + A + E D ++W L
Sbjct: 370 NLKFGKE-VQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTL 427
Query: 472 FCA 474
A
Sbjct: 428 LAA 430
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 200/345 (57%), Gaps = 7/345 (2%)
Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQL--GKTRGAFKVFDETPEKNKSESVLLWN 203
LG LH ++SG D FVR L +MY + G+ A FDE P ++ V L N
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRD----VFLCN 120
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
V++ G + +A ++F M +++ SW ++I G+ +GD+ A E+F+ ++ S
Sbjct: 121 VMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFS 180
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W++MI+ +++ +++AL ++ +M AGV + ++VS LSAC+ +GAL G VH ++
Sbjct: 181 WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVE 240
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N + +GTALVDMYAKCG+IE + VF KD+LTW++MI GLA HG A+
Sbjct: 241 SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALS 300
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M+ G +P+ F+ +L AC + G V +F SM + + P ++H+ +V+LL
Sbjct: 301 LFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLL 360
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
R G V++A+ I M PD +IW L ACR HK+ +IA+ A+
Sbjct: 361 GRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAM 405
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 115/251 (45%), Gaps = 14/251 (5%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ DAF + Y + ++ A +++ E + + +++ CS +G L E
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234
Query: 221 LFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ + V +L+D + + GD++ + ++F MP K V++W++MI G + +G
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT- 335
AL++F +M+ G++ N+ T + L AC VG + G + + +S + G +
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMS----DVHGVVPRM 350
Query: 336 ----ALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+VD+ + G++E A L+ T + D + W ++ IH E A + K+
Sbjct: 351 EHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKV 410
Query: 391 SGTEPDGTVFL 401
DG L
Sbjct: 411 LDPLADGHYVL 421
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I ++ + A IFD ++ ++ +I A+ + + + M V P+
Sbjct: 153 MIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPD 212
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
++ V + +++ L++G +H + + VE D + L DMY + G + KVF
Sbjct: 213 CISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFH 272
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMR 242
P K+ VL W+ +I G + G A+ LF G+ P N +++ ++
Sbjct: 273 AMPVKD----VLTWSSMIIGLANHGLGHDALSLFSEMISQGLQP--NEITFIGVLIACTH 326
Query: 243 KGDLKKAGELFEQMPE-KGVVS----WTAMINGFSQNGEAEKALAMFFQM 287
G + + F M + GVV + M++ + G E+A+ + M
Sbjct: 327 VGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSM 376
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 244/494 (49%), Gaps = 31/494 (6%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + L+ + K L QIHA I+ + + A+ I T+ I++ S +A +FD+ +
Sbjct: 2 ERECLFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRS 61
Query: 91 PK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLG 148
+ + + N +I+ + + + R + P+ T+ ++K A + G
Sbjct: 62 HRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEG 121
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL------- 201
H +VK G +D +V L DMY + G A KVF++ P+++ L
Sbjct: 122 LETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRR 181
Query: 202 --------------------WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
+N+LI+G K+G + A LF MP++NV SW S+I G+
Sbjct: 182 GDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYC 241
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVV 300
GD+ A LF+ MPEK +VSW AMI G+ QN + +AL +F ++ + V N+ TVV
Sbjct: 242 NNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVV 301
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L A A +GALE G VH ++ + T+LVDMY KCG I A VF E +K
Sbjct: 302 SILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKK 361
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
+ TW A+I G A++G +A++ F +M G +P+ +L+AC + G V+ F
Sbjct: 362 ETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQF 421
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+M + + P ++H+ +V+LL R G +D+A N I MP + +I + AC D
Sbjct: 422 KAM-IESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSND 480
Query: 481 TKIAKIALQSSCSL 494
A+ L + ++
Sbjct: 481 VTRAQRVLNQAVNM 494
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T I+ I + + + +H + L A+ + T L+ I A +F
Sbjct: 296 NEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVF 355
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
K +N LI G A N + F M + ++PN +T V + + L+
Sbjct: 356 SEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVE 415
Query: 147 LGRGLHCLIVKSGV 160
G+G +++SG+
Sbjct: 416 EGKGQFKAMIESGL 429
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 151/495 (30%), Positives = 245/495 (49%), Gaps = 61/495 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFAS----SRITTQLISSASLHKSIDYALSI-FDH 88
++SL + +Q +QI + I+ L+++ + T+L+ ++ + L + FD
Sbjct: 11 LVSLFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQCVPFSQNQNTCLLLLFDT 70
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLSL 144
N + N +I A SH + + + + V+P++ T+P + SKS+A
Sbjct: 71 INTPNTRLLNKMI---AACSHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKSIAQNPF 127
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ ++ I K G + D F+ L + G A +VFDE+P + + W
Sbjct: 128 M-----IYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESP----FQDTVAWTA 178
Query: 205 LINGCSKIGYLRKAVELFGMMPKKN-------VAS---------------WV-------- 234
LING K +A++ F M ++ VAS WV
Sbjct: 179 LINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAG 238
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+L+D + + G + A ++F ++P + VV WT ++ G+ Q+ + + AL F
Sbjct: 239 RVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAF 298
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+ ML V NDFT+ S LSACA++GAL+ G VH YI CN + +GTALVDMYAKC
Sbjct: 299 WDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKC 358
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G+I+ A VF K++ TWT +I GLA+HG A+ F M+ SG +P+ F+ +L
Sbjct: 359 GSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVL 418
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
AC + G V+ F+ M+ Y ++P + H+ +V++L R G ++ A I+ MP P
Sbjct: 419 AACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPS 478
Query: 465 FVIWGALFCACRTHK 479
+ GALF AC HK
Sbjct: 479 PGVLGALFGACLVHK 493
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 9/251 (3%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+LI F G ++ A ++F++ P + V+WTA+ING+ +N +AL F +M
Sbjct: 147 ALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSV 206
Query: 295 NDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ TV S L A A VG + G VH Y+ L G + +AL+DMY KCG+ E A V
Sbjct: 207 DAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKV 266
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG-- 411
F E +D++ WT ++ G +++ A++ F M+ P+ ++L+AC G
Sbjct: 267 FNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGAL 326
Query: 412 -QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
Q +L + + + I +V T +V++ ++ G +D+AL MP + W
Sbjct: 327 DQGRLVHQYIECNK----INMNVTLGTALVDMYAKCGSIDEALRVFENMP-VKNVYTWTV 381
Query: 471 LFCACRTHKDT 481
+ H D
Sbjct: 382 IINGLAVHGDA 392
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N+ A+ ++ S + N+ T + ++S + Q R +H I + + + +
Sbjct: 289 NKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLG 348
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+ + SID AL +F++ KN++ + V+I GLA + ++ F ML+ ++
Sbjct: 349 TALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQ 408
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGL-----HCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
PN +T+ V + + + G+ L H +K +++ + DM + G
Sbjct: 409 PNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGC----MVDMLGRAGYLE 464
Query: 182 GAFKVFDETPEK 193
A ++ D P K
Sbjct: 465 DAKQIIDNMPMK 476
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 253/513 (49%), Gaps = 42/513 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++I NS R +H +I + + LI S + I A +FD
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K+ ++NV++ G +N + + F+ M R PN +T+ V AS +++ G
Sbjct: 209 PSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGS 268
Query: 150 GLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAFKVFDE-TP--------------- 191
LH L+V SG+E D+ V L D+Y + A K+FD+ TP
Sbjct: 269 QLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVL 328
Query: 192 ----------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
E+ ++ SV L +VL C+ + L EL G + K
Sbjct: 329 NGMNNNALEIFRWLLQERMRANSVTLASVL-PACAGLAALTLGKELHGHILKNGHGGSCY 387
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+++D + + G L A + F + +K V W +MI SQNG+ E+A+ +F QM AG
Sbjct: 388 VGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG 447
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ + ++ +ALSACA + AL G +H ++ F +AL+DMY+KCGN++ A
Sbjct: 448 TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLAC 507
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF +EK+ ++W ++I HGR + ++ F M+ G +PD FLAI++AC ++G
Sbjct: 508 RVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAG 567
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
QV +++F M + I ++H+ +V+L R G++++A IN MP +PD +WG L
Sbjct: 568 QVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTL 627
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
ACR H + ++A++A ++ L+ PQ Y
Sbjct: 628 LGACRLHGNVELAEVASRNLFDLD---PQNSGY 657
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 138/495 (27%), Positives = 223/495 (45%), Gaps = 57/495 (11%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I+ + Q RQ HAQ++++ + + + T+L+ L + A +IF
Sbjct: 52 ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+N +IRG F + + ML P++ T+P+V K+ L+ ++LGR +H
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I G E D FV L Y + G A +FD P K+ +LWNV++NG K G
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG----VLWNVMLNGYVKNG 227
Query: 214 YLRKAVELF-----------------------------------------GMMPKKNVAS 232
A +F G+ VA+
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+LID + + D++ A ++F+Q +V TAMI+G+ NG AL +F +L +
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
RAN T+ S L ACA + AL G +H +I N G +G+A++DMYAKCG ++ A
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC----- 407
F +KD + W +MI + +G+ E+AI F++M +GT+ D A L+AC
Sbjct: 408 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 467
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+ G+ A + R D F E + ++++ S+ G +D A + M E + V
Sbjct: 468 LHYGKEIHAFMMRGAFRSDLFAE------SALIDMYSKCGNLDLACRVFDTMEEKNE-VS 520
Query: 468 WGALFCACRTHKDTK 482
W ++ A H K
Sbjct: 521 WNSIIAAYGNHGRLK 535
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+VS L C L G + H + N G G +GT L+ MY CG A +F + +
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
W MI G + G+++ A+ ++ KM+ GT PD F ++ AC V L
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
D ++F F E V + ++ S G + A ++MP + D V+W +
Sbjct: 169 VHDKIQFMGF-ELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNVML 220
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/489 (29%), Positives = 244/489 (49%), Gaps = 59/489 (12%)
Query: 84 SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
S+F + K +++ +N +I A + + F M +LS+ PNR T+P KS +SL
Sbjct: 40 SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L G+ +H G D FV L DMY + G A K+FDE PE+N V+ W
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERN----VVSW 155
Query: 203 NVLINGCSKIGYLRKAVELF---------------------------------------- 222
+I+G + R+AV LF
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKS 215
Query: 223 ------GMMPKKN----VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G+ KK +A +L+D + + G++ + ++F+ M E V SW ++I ++
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275
Query: 273 QNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
QNG + +A ++F M+ G VR N T+ + L ACA GAL+ G +H+ + +
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNL 335
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+GT++VDMY KCG +E A F K K++ +WT M+ G +HG ++A++ F +M+
Sbjct: 336 VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +P+ F+++L AC ++G +K ++F+ M+ ++ +EP ++H++ +V+LL R G + +
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511
A I +M PDF++WG+L ACR HK+ ++ +I+ + L+ P Y
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLD---PSNCGYYVLLSNI 512
Query: 512 KGDGRTWRE 520
D W +
Sbjct: 513 YADAGRWDD 521
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 63/388 (16%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+QIH Q + + + + LI S ++ A +FD +N+ + +I G +N
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165
Query: 108 SHFQSCISHFVFMLRLSVRP-------------NRLTYPFVSKSVASLSLLSLGRGLHCL 154
+ + F+F L V + + V + A + + S+ +H L
Sbjct: 166 ERAREAV--FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VK G E V L D Y + G+ + KVFD E + V WN LI ++ G
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETD----VCSWNSLIAVYAQNGL 279
Query: 215 LRKAVELFGMMPKK----------------------------------------NVASWV 234
+A LF M K+ N+
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGT 339
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
S++D + + G ++ A + F+++ K V SWT M+ G+ +G ++A+ +F++M+ G++
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASL 352
N T VS L+AC+ G L+ G N + C +F ++ I + +VD+ + G ++ A
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKC-EFDVEPGIEHYSCMVDLLGRAGYLKEAYG 458
Query: 353 VFGETKEK-DLLTWTAMIWGLAIHGRYE 379
+ E K K D + W +++ IH E
Sbjct: 459 LIQEMKVKPDFIVWGSLLGACRIHKNVE 486
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 16/215 (7%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K N +T + ++ S + + + IH Q++ L + + T ++
Sbjct: 291 VKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGR 350
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A FD KN+ + V++ G + H + + F M+R ++PN +T+ V +
Sbjct: 351 VEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAA 410
Query: 139 VASLSLLSLG----RGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
+ LL G + C V+ G+E+ + + D+ + G + A+ + E K
Sbjct: 411 CSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSC----MVDLLGRAGYLKEAYGLIQEMKVK 466
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
++W L+ C + K VEL + +K
Sbjct: 467 ---PDFIVWGSLLGACR----IHKNVELGEISARK 494
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 227/456 (49%), Gaps = 40/456 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
K H+I++ + R++ ++ NL++ ++S + I A
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYS----WNNMLSGYAKLGMIKPAR 146
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD K++ +N ++ A+ ++ + + +L ++ N ++ V L
Sbjct: 147 KLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLK 206
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ L R +H I+ +G + + + D YV
Sbjct: 207 EVGLTRQVHGQILVAGFLSNVVLSSSVLDAYV---------------------------- 238
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
K G + A +LF M ++V +W +++ G+ + GD+K A ELF +MPEK VS
Sbjct: 239 -------KCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVS 291
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WTA+I+G+++NG KAL +F +M+ VR + FT S L ACA + +L+ G ++H Y+
Sbjct: 292 WTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLL 351
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAI 382
+F + +AL+DMY+KCG++ VF K D++ W +I LA HG E+AI
Sbjct: 352 RINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAI 411
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
Q M+ SG +PD F+ IL AC +SG V+ LNFF+SM DY I PS +H+ +++L
Sbjct: 412 QMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDL 471
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
L R G ++ ++ + KMP PD +W AL CR H
Sbjct: 472 LGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIH 507
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 32/149 (21%)
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGN--- 346
G+R + T+ S L CA AL G RVH ++ G + L++MYAKCG
Sbjct: 54 GLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVE 113
Query: 347 ----------------------------IEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
I+ A +F + EKD+++W M+ A G +
Sbjct: 114 ARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYW 173
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
++A++++ + G + +G F +LT C
Sbjct: 174 DEALRFYSEFRQLGIQCNGFSFAGVLTVC 202
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H + T + + S S K +QIHA ++ N ++ + + LI S S+
Sbjct: 319 HVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIG 378
Query: 83 LSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
+FD K ++ ++N +I LA++ + I M+R +P+++T+ + + +
Sbjct: 379 RKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSH 438
Query: 142 LSLLSLG----RGLHCL--IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
L+ G + C IV S Y + + LG+ +V D+ +
Sbjct: 439 SGLVQQGLNFFESMSCDYGIVPSQEHYACLIDL--------LGRAGCFEEVMDQLEKMPY 490
Query: 196 SESVLLWNVLINGCSKIGYLRK 217
+WN L+ C G++ +
Sbjct: 491 KPDDRVWNALLGVCRIHGHIER 512
>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 866
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 209/405 (51%), Gaps = 12/405 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
L +N ++ G A + + ++ ML + P+ T + KSVA+ L G +H
Sbjct: 284 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 343
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C ++ G+ DA+ L DMY + G+ A +VFD +N + WN L+ G +
Sbjct: 344 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRN----LATWNSLVAGHANA 399
Query: 213 GYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
G+ +A+EL M + NV +W LI G+ G +A L Q+ GV VSW
Sbjct: 400 GHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSW 459
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G G+ + + F +M G++ + T++ L ACA + L G +H +
Sbjct: 460 TSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALR 519
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + + TAL+DMYAK G++ +A VFG + K+L+ AM+ GLA+HG+ +A
Sbjct: 520 RAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAAL 579
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M SG +PDG F A+LTAC G V A + D M Y + P+ +HH +V+LL+
Sbjct: 580 FHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLA 639
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G +D+A+ FI + P P WGAL C H + +A+ A +
Sbjct: 640 RRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAAR 684
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 163/388 (42%), Gaps = 31/388 (7%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
K+ ++N + LAE + I+ F M V + + GR +
Sbjct: 141 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 200
Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H ++ G V+ V LA MY + A V T V+ WN +I C
Sbjct: 201 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRT----AGAGVVAWNAVIACCV 256
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G + A+EL M + S + E + +W +++G
Sbjct: 257 RLGLVDDALELAERMARDAETS----------------------EAAEPTLATWNTVLSG 294
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+++G +ALA+ +ML+ G+ + TV S L + A G+L G VH + +
Sbjct: 295 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 354
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
GTALVDMYAKCG ++ A VF + ++L TW +++ G A G +++A++ + M
Sbjct: 355 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKR 414
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+P+ T + ++T +G A+ ++ + P+V T +++ G
Sbjct: 415 HRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIK-SAGVAPNVVSWTSLISGSCNGGDYQ 473
Query: 451 KALNFINKMPET---PDFVIWGALFCAC 475
+ F ++M + P V L AC
Sbjct: 474 DSFTFFSEMQQDGIQPSLVTMLVLLRAC 501
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 157/366 (42%), Gaps = 16/366 (4%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ T + ++ + +S S ++H + H L + T L+ + +D A +F
Sbjct: 319 DAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVF 378
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +NL +N L+ G A HF + M R + PN T+ + A L S
Sbjct: 379 DGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSS 438
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
L I +GV + L G + +F F E + S++ VL+
Sbjct: 439 QAMLLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 498
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
C+ + L K EL ++ V +LID + + G L A +F ++ K +V
Sbjct: 499 RACAGLALLTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLV 558
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
AM+ G + +G+A +A A+F M +G++ + T + L+AC +G + Y+
Sbjct: 559 CCNAMLTGLAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLV---TEAWEYL 615
Query: 323 SCNDFGLK-GAIGTA-----LVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
+D K G TA +VD+ A+ G + EA + + E +W A++ G AIH
Sbjct: 616 --DDMEAKYGVAPTAEHHACMVDLLARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIH 673
Query: 376 GRYEQA 381
G + A
Sbjct: 674 GNLDLA 679
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 229/450 (50%), Gaps = 40/450 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
N + QIH+ I + I + L+ S +++ A +FD +N+ +N LI
Sbjct: 166 NDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLI 225
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
+N + F ML V P+ +T V + ASLS + +G+ +H +VK
Sbjct: 226 TCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK---- 281
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+ K R ++L N ++ +K +++A +
Sbjct: 282 ---------------MDKLRN---------------DIILSNAFVDMYAKCSRIKEARFI 311
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F MP +NV + S++ G+ K A +F +M E+ VVSW A+I G++QNGE E+AL
Sbjct: 312 FDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEAL 371
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------IGT 335
++F + V +T + L ACA + L G++ H ++ + F + +G
Sbjct: 372 SLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGN 431
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
+L+DMY KCG +E LVF + E+D ++W AMI G A +G +A++ F++M+ SG +P
Sbjct: 432 SLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKP 491
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
D + +L+AC ++G V+ ++F SM D+ + P H+T +V+LL R G +++A +
Sbjct: 492 DHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSI 551
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAK 485
I +MP PD VIWG+L AC+ H++ + K
Sbjct: 552 IEEMPVQPDSVIWGSLLAACKVHRNITLGK 581
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S V + N LI+ +K G L +LF MP++NV +W S++ G + G L +A LF
Sbjct: 52 SNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRS 111
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ +W +M++GF+Q+ E+AL F M G N++T S LSAC+ + + G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRG 171
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
V++H+ I+ + IG+ALVDMY+KCGN+ A VF E ++++++W ++I +
Sbjct: 172 VQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQN 231
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF------FDSMRFDYFI 429
G +A++ F+ M+ S EPD ++++AC +K+ D +R D +
Sbjct: 232 GPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIIL 291
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
V++ ++ ++ +A + MP
Sbjct: 292 S------NAFVDMYAKCSRIKEARFIFDSMP 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 38/211 (18%)
Query: 297 FTVVSA----LSACAKVGALEAGVR-VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA- 350
FTV S L +C K+ VR VH + + F + I L+D YAKCG++E
Sbjct: 16 FTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGR 75
Query: 351 ---------------SLVFGETK---------------EKDLLTWTAMIWGLAIHGRYEQ 380
S+V G TK E+D TW +M+ G A H R E+
Sbjct: 76 QLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ YF M G + F + L+AC + + S+ V + +V
Sbjct: 136 ALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIH-SLIAKSPCLSDVYIGSALV 194
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ S+ G V+ A ++M + + V W +L
Sbjct: 195 DMYSKCGNVNDAQQVFDEMGDR-NVVSWNSL 224
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 234/451 (51%), Gaps = 47/451 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +NL + ++I A+ + I F+ M P+R TY V +
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
L LL+LG+ LH +++ G+ D V L DMY + G + KVF++ PE N
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 299
Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
V+ W +I + G K A+ELF M + V
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359
Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S+ SLI + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 360 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F ++ D G+ + FT S LS A +GA+ G ++H + + I AL+
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 479
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
MY++CGNIEAA VF E +++++++WT+MI G A HG +A++ F KM+ +GT+P+
Sbjct: 480 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
++A+L+AC + G + F+SM ++ I P ++H+ +V+LL R G + +A+ FIN
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 599
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP D ++W L ACR H +T++ + A +
Sbjct: 600 MPLMADALVWRTLLGACRVHGNTELGRHAAE 630
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 128/532 (24%), Positives = 233/532 (43%), Gaps = 78/532 (14%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAENS 108
+H +++ L S + LIS S + A IF+ ++L ++ ++ A NS
Sbjct: 48 VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 107
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVR 167
I F+ ML L PN + V ++ ++ + +G ++ +VK+G +E D V
Sbjct: 108 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 167
Query: 168 VHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L DM+V+ G A+KVFD+ PE+N ++ W ++I +++G R A++LF
Sbjct: 168 CELIDMFVKGSGDLGSAYKVFDKMPERN----LVTWTLMITRFAQLGCARDAIDLFLDME 223
Query: 223 --GMMPKK---------------------------------NVASWVSLIDGFMR---KG 244
G +P + +V SL+D + + G
Sbjct: 224 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 283
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTVVSAL 303
+ + ++FEQMPE V+SWTA+I + Q+GE +K A+ +F +M+ +R N F+ S L
Sbjct: 284 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 343
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
AC + G +V++Y +G +L+ MYA+ G +E A F EK+L+
Sbjct: 344 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 403
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
++ A++ G A + + E+A F ++ +G F ++L SG +
Sbjct: 404 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL-----SGAASIGAMGKGEQ 458
Query: 424 RFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCACRTH- 478
++ K + + N L SR G ++ A N+M E + + W ++ H
Sbjct: 459 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHG 517
Query: 479 -----------------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K +I +A+ S+CS I + + + ++ G
Sbjct: 518 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHG 569
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 156/331 (47%), Gaps = 42/331 (12%)
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
M + + P+ TY + KS LG+ +H +++SG+E D+ V L +Y + G
Sbjct: 16 LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 75
Query: 179 KTRGAFKVFDETPEK---------------NKSESVLLWNVL-----------------I 206
T A +F+ K N E +W L I
Sbjct: 76 DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 135
Query: 207 NGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMR-KGDLKKAGELFEQMPEKG 260
CS Y ++G + K +V LID F++ GDL A ++F++MPE+
Sbjct: 136 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERN 195
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+V+WT MI F+Q G A A+ +F M +G + FT S LSAC ++G L G ++H+
Sbjct: 196 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHS 255
Query: 321 YISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
+ L +G +LVDMYAKC G+++ + VF + E ++++WTA+I G
Sbjct: 256 RVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGE 315
Query: 378 YE-QAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ +AI+ F KM+ P+ F ++L AC
Sbjct: 316 CDKEAIELFCKMISGHIRPNHFSFSSVLKAC 346
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 14/311 (4%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG--YLRKAVELFGMMPKKNVAS 232
+ +G+ AF D ++N + +++L+ C + L K V M + S
Sbjct: 2 LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 61
Query: 233 WV--SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
V +LI + + GD + A +FE M K +VSW+AM++ F+ N +A+ F ML+
Sbjct: 62 VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAK-CGNI 347
G N++ + + AC+ G ++ ++ + +G L+DM+ K G++
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 181
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+A VF + E++L+TWT MI A G AI F M SG PD + ++L+AC
Sbjct: 182 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241
Query: 408 WYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRV---GQVDKALNFINKMPETP 463
G + L +R ++ V +V++ ++ G VD + +MPE
Sbjct: 242 TELGLLALGKQLHSRVIRLGLALDVCVG--CSLVDMYAKCAADGSVDDSRKVFEQMPE-H 298
Query: 464 DFVIWGALFCA 474
+ + W A+ A
Sbjct: 299 NVMSWTAIITA 309
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI + S H N+ + + ++ + + Q+++ + + + + + LIS
Sbjct: 320 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 379
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ ++ A FD KNL +N ++ G A+N + F + + + T
Sbjct: 380 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 439
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + AS+ + G +H ++K G + + + L MY + G AF+VF+E
Sbjct: 440 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 499
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
++N V+ W +I G +K G+ +A+E+F M K N ++V+++ G +
Sbjct: 500 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 555
Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+ + F M E G+V + M++ ++G +A+ M + A+ +
Sbjct: 556 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 612
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L AC G E G I + A L +++A G + + KE++L
Sbjct: 613 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 671
Query: 363 LTWTAMIW 370
+ W
Sbjct: 672 IKEAGCSW 679
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 234/451 (51%), Gaps = 47/451 (10%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +NL + ++I A+ + I F+ M P+R TY V +
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
L LL+LG+ LH +++ G+ D V L DMY + G + KVF++ PE N
Sbjct: 262 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 317
Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
V+ W +I + G K A+ELF M + V
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377
Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
S+ SLI + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 378 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +F ++ D G+ + FT S LS A +GA+ G ++H + + I AL+
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 497
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
MY++CGNIEAA VF E +++++++WT+MI G A HG +A++ F KM+ +GT+P+
Sbjct: 498 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
++A+L+AC + G + F+SM ++ I P ++H+ +V+LL R G + +A+ FIN
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 617
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP D ++W L ACR H +T++ + A +
Sbjct: 618 MPLMADALVWRTLLGACRVHGNTELGRHAAE 648
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 128/532 (24%), Positives = 233/532 (43%), Gaps = 78/532 (14%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAENS 108
+H +++ L S + LIS S + A IF+ ++L ++ ++ A NS
Sbjct: 66 VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 125
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVR 167
I F+ ML L PN + V ++ ++ + +G ++ +VK+G +E D V
Sbjct: 126 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 185
Query: 168 VHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L DM+V+ G A+KVFD+ PE+N ++ W ++I +++G R A++LF
Sbjct: 186 CELIDMFVKGSGDLGSAYKVFDKMPERN----LVTWTLMITRFAQLGCARDAIDLFLDME 241
Query: 223 --GMMPKK---------------------------------NVASWVSLIDGFMR---KG 244
G +P + +V SL+D + + G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTVVSAL 303
+ + ++FEQMPE V+SWTA+I + Q+GE +K A+ +F +M+ +R N F+ S L
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
AC + G +V++Y +G +L+ MYA+ G +E A F EK+L+
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 421
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
++ A++ G A + + E+A F ++ +G F ++L SG +
Sbjct: 422 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL-----SGAASIGAMGKGEQ 476
Query: 424 RFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCACRTH- 478
++ K + + N L SR G ++ A N+M E + + W ++ H
Sbjct: 477 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHG 535
Query: 479 -----------------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K +I +A+ S+CS I + + + ++ G
Sbjct: 536 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHG 587
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 43/352 (12%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N LIR L + S M + + P+ TY + KS LG+ +H +++
Sbjct: 14 NRLIRQL-DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQ 72
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK---------------NKSESVLLW 202
SG+E D+ V L +Y + G T A +F+ K N E +W
Sbjct: 73 SGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIW 132
Query: 203 NVL-----------------INGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGF 240
L I CS Y ++G + K +V LID F
Sbjct: 133 TFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMF 192
Query: 241 MR-KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
++ GDL A ++F++MPE+ +V+WT MI F+Q G A A+ +F M +G + FT
Sbjct: 193 VKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTY 252
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGE 356
S LSAC ++G L G ++H+ + L +G +LVDMYAKC G+++ + VF +
Sbjct: 253 SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 312
Query: 357 TKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E ++++WTA+I G + +AI+ F KM+ P+ F ++L AC
Sbjct: 313 MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 14/311 (4%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG--YLRKAVELFGMMPKKNVAS 232
+ +G+ AF D ++N + +++L+ C + L K V M + S
Sbjct: 20 LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 79
Query: 233 WV--SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
V +LI + + GD + A +FE M K +VSW+AM++ F+ N +A+ F ML+
Sbjct: 80 VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAK-CGNI 347
G N++ + + AC+ G ++ ++ + +G L+DM+ K G++
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 199
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+A VF + E++L+TWT MI A G AI F M SG PD + ++L+AC
Sbjct: 200 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259
Query: 408 WYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRV---GQVDKALNFINKMPETP 463
G + L +R ++ V +V++ ++ G VD + +MPE
Sbjct: 260 TELGLLALGKQLHSRVIRLGLALDVCVG--CSLVDMYAKCAADGSVDDSRKVFEQMPEH- 316
Query: 464 DFVIWGALFCA 474
+ + W A+ A
Sbjct: 317 NVMSWTAIITA 327
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI + S H N+ + + ++ + + Q+++ + + + + + LIS
Sbjct: 338 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 397
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
+ ++ A FD KNL +N ++ G A+N + F + + + T
Sbjct: 398 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 457
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
+ + AS+ + G +H ++K G + + + L MY + G AF+VF+E
Sbjct: 458 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 517
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
++N V+ W +I G +K G+ +A+E+F M K N ++V+++ G +
Sbjct: 518 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 573
Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
+ + F M E G+V + M++ ++G +A+ M + A+ +
Sbjct: 574 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 630
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L AC G E G I + A L +++A G + + KE++L
Sbjct: 631 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 689
Query: 363 LTWTAMIW 370
+ W
Sbjct: 690 IKEAGCSW 697
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 251/497 (50%), Gaps = 47/497 (9%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
T+++ + + ++ ++IH Q+I++ ++ T +++ + + ++ A +FD
Sbjct: 179 TYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPE 238
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
++L +N +I G A+N ++ + + M RP+ +T + +VA + L +GR +
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H +++G E V L DMY + G A +FD K +V+ WN +I+G +
Sbjct: 299 HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK----TVVSWNSMIDGYVQ 354
Query: 212 IGYLRKAVELFGMMPKK---------------------------------------NVAS 232
G A+E+F M + +V+
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSV 414
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
SLI + + + A E+FE + K +VSW AMI G++QNG +A+ F +M +
Sbjct: 415 MNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNI 474
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+ + FT+VS + A A++ L +H + +C D + + TALVDMYAKCG + A
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNV--FVATALVDMYAKCGAVHTA 532
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F E+ + TW AMI G HG + A++ F+KM +P+ FL +L+AC +S
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ +F SM+ DY +EP++ H+ +V+LL R ++++A +FI KMP P ++GA
Sbjct: 593 GLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGA 652
Query: 471 LFCACRTHKDTKIAKIA 487
+ ACR HK+ ++ + A
Sbjct: 653 MLGACRIHKNVELGEKA 669
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 229/492 (46%), Gaps = 48/492 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ S K+L Q II + L++ T+L+S S+ A +F K +
Sbjct: 83 LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
++ +++G A NS +S F M VRP + ++ K + L G+ +HC ++
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+G + F + +MY + A+K+FD PE++ ++ WN +I+G ++ G+ +
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERD----LVCWNTIISGYAQNGFGK 258
Query: 217 KAVELFGMMPKK-----------------NVASW----------------------VSLI 237
A+EL M ++ +V S +L+
Sbjct: 259 TALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALV 318
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G + A +F++M K VVSW +MI+G+ QNG+ A+ +F +M+D V +
Sbjct: 319 DMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNV 378
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
TV+ AL ACA +G +E G VH + + G ++ +L+ MY+KC ++ A+ +F
Sbjct: 379 TVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ K L++W AMI G A +GR +AI YF KM +PD ++++ A + A
Sbjct: 439 QHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA- 497
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ + ++ +V T +V++ ++ G V A + M E W A+ T
Sbjct: 498 KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGT 556
Query: 478 HKDTKIAKIALQ 489
H + K AL+
Sbjct: 557 H---GLGKAALE 565
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/411 (23%), Positives = 176/411 (42%), Gaps = 47/411 (11%)
Query: 11 TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
TA+ ++ K ++IT I+ + S + R IH + + ++T L+
Sbjct: 259 TALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALV 318
Query: 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
S S+ A IFD T K + +N +I G +N + + F M+ V +
Sbjct: 319 DMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNV 378
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T + A L + GR +H L+ + + D V L MY + + A ++F+
Sbjct: 379 TVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------------------- 230
K +++ WN +I G ++ G + +A++ F M +N+
Sbjct: 439 QHK----TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVL 494
Query: 231 --ASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
A W+ +L+D + + G + A +LF+ M E+ V +W AMI+G+
Sbjct: 495 PQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGY 554
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+G + AL +F +M ++ N+ T + LSAC+ G +E G + + D+GL+
Sbjct: 555 GTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMK-KDYGLEP 613
Query: 332 AIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
A+ A+VD+ + + EA + E + + AM+ IH E
Sbjct: 614 AMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVE 664
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 261/552 (47%), Gaps = 85/552 (15%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H+ S + I + S+ +T QL ++H+ II L S + +LI+ + + +
Sbjct: 8 HECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 67
Query: 83 LSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
S+F +P N++++N +IR L N F +S + R+ ++P+ T+P V + A
Sbjct: 68 FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + + +H ++ G D ++ L DMY + A KVF+E P ++ V+
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD----VVS 183
Query: 202 WNVLINGCSKIGYLRKAVELF----------------------------GMMPKKNVASW 233
WN LI+G + GY +A+E++ G + +
Sbjct: 184 WNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKY 243
Query: 234 VS-----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
V LI+ + + G+L + E+F M K VSW +MIN + QNG+
Sbjct: 244 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGK 303
Query: 277 AEKALAMF-------------------------------FQMLDAGVRANDFTVVSALSA 305
+L +F +M GV + T++S L
Sbjct: 304 MGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 363
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
C+ + A G +H I GL+ +G L++MY+KCG++ + VF K KD++
Sbjct: 364 CSLLAAKRQGKEIHGCIF--KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 421
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
TWTA+I ++G ++A++ F +M +G PD F+AI+ AC +SG V+ LN+F M
Sbjct: 422 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 481
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+ DY IEP ++H+ VV+LLSR +DKA +FI MP PD IWGAL ACR DT+I
Sbjct: 482 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 541
Query: 484 AKIALQSSCSLN 495
A+ + LN
Sbjct: 542 AERVSERIIELN 553
>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 867
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 209/405 (51%), Gaps = 12/405 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
L +N ++ G A + + ++ ML + P+ T + KSVA+ L G +H
Sbjct: 285 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 344
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C ++ G+ DA+ L DMY + G+ A +VFD +N + WN L+ G +
Sbjct: 345 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRN----LATWNSLVAGHANA 400
Query: 213 GYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
G+ +A+EL M + NV +W LI G+ G +A L Q+ GV VSW
Sbjct: 401 GHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSW 460
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G G+ + + F +M G++ + T++ L ACA + L G +H +
Sbjct: 461 TSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALR 520
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + + TAL+DMYAK G++ +A VFG + K+L+ AM+ GLA+HG+ +A
Sbjct: 521 RAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAAL 580
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M SG +PDG F A+LTAC G V A + D M Y + P+ +HH +V+LL+
Sbjct: 581 FHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLA 640
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
R G +D+A+ FI + P P WGAL C H + +A+ A +
Sbjct: 641 RRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAAR 685
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 163/388 (42%), Gaps = 31/388 (7%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
K+ ++N + LAE + I+ F M V + + GR +
Sbjct: 142 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 201
Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H ++ G V+ V LA MY + A V T V+ WN +I C
Sbjct: 202 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRT----AGAGVVAWNAVIACCV 257
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G + A+EL M + S + E + +W +++G
Sbjct: 258 RLGLVDDALELAERMARDAETS----------------------EAAEPTLATWNTVLSG 295
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+++G +ALA+ +ML+ G+ + TV S L + A G+L G VH + +
Sbjct: 296 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 355
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
GTALVDMYAKCG ++ A VF + ++L TW +++ G A G +++A++ + M
Sbjct: 356 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKR 415
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+P+ T + ++T +G A+ ++ + P+V T +++ G
Sbjct: 416 HRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIK-SAGVAPNVVSWTSLISGSCNGGDYQ 474
Query: 451 KALNFINKMPET---PDFVIWGALFCAC 475
+ F ++M + P V L AC
Sbjct: 475 DSFTFFSEMQQDGIQPSLVTMLVLLRAC 502
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 157/366 (42%), Gaps = 16/366 (4%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ T + ++ + +S S ++H + H L + T L+ + +D A +F
Sbjct: 320 DAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVF 379
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +NL +N L+ G A HF + M R + PN T+ + A L S
Sbjct: 380 DGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSS 439
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
L I +GV + L G + +F F E + S++ VL+
Sbjct: 440 QAMLLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 499
Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
C+ + L K EL ++ V +LID + + G L A +F ++ K +V
Sbjct: 500 RACAGLALLTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLV 559
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
AM+ G + +G+A +A A+F M +G++ + T + L+AC +G + Y+
Sbjct: 560 CCNAMLTGLAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLV---TEAWEYL 616
Query: 323 SCNDFGLK-GAIGTA-----LVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
+D K G TA +VD+ A+ G + EA + + E +W A++ G AIH
Sbjct: 617 --DDMEAKYGVAPTAEHHACMVDLLARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIH 674
Query: 376 GRYEQA 381
G + A
Sbjct: 675 GNLDLA 680
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 177/285 (62%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G KA +F M KN +W ++IDG+MR G + A +LF++MPE
Sbjct: 103 VMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPE 162
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+ALA F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 163 RDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWV 222
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 223 HRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA 282
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F +M+ D+ I P ++H+
Sbjct: 283 HESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGC 342
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+V+L SR G+++ ALN + MP P+ V+ G+L ACR H + +
Sbjct: 343 LVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGNNTV 387
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 40/255 (15%)
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--G 310
Q + VSWT+ I S+NG +A F M AGV N T ++ LS C V G
Sbjct: 22 LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSG 81
Query: 311 ALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLV-------------- 353
+ G +H Y +C GL +GTA++ MY+K G A LV
Sbjct: 82 SEALGDLLHGY-ACK-LGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNT 139
Query: 354 -----------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
F E E+DL++WTAMI G G +E+A+ +F++M SG +PD
Sbjct: 140 MIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPD 199
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
+A L AC + G + L + + + +++ +++L R G V+ A
Sbjct: 200 YVAIIAALAACTHLGALSFGL-WVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVF 258
Query: 457 NKMPETPDFVIWGAL 471
+KM E V W ++
Sbjct: 259 DKM-EKRTVVSWNSV 272
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 101/274 (36%), Gaps = 69/274 (25%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A+ +FD ++L + +I G + + ++ F M V+P+ + +
Sbjct: 150 VNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAA 209
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
L LS G +H ++ + + V L D+Y + G A +VFD+
Sbjct: 210 CTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDK--------- 260
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
M K+ V SW S+I GF G+ ++ F +M E
Sbjct: 261 --------------------------MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 294
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ G + + T AL+AC+ VG +E G+R
Sbjct: 295 E-------------------------------GFKPDAVTFTGALTACSHVGLVEEGLRY 323
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ D + I LVD+Y++ G +E A
Sbjct: 324 FQTMK-RDHRISPRIEHYGCLVDLYSRAGRLEDA 356
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 34/153 (22%)
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC---- 407
L ++ + ++WT+ I L+ +GR +A + F M +G EP+ F+A+L+ C
Sbjct: 20 LKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVS 79
Query: 408 ---------WYSGQVKLALN------------------FFDSMR--FDYFIEPSVKHHTV 438
+ KL L+ F R FD+ + +
Sbjct: 80 SGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNT 139
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+++ R GQV+ A+ ++MPE D + W A+
Sbjct: 140 MIDGYMRSGQVNNAVKLFDEMPER-DLISWTAM 171
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 148/540 (27%), Positives = 250/540 (46%), Gaps = 85/540 (15%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALS-- 84
+ H++ L+ S + L Q+HA ++ H A + + QL++S A ++ D AL
Sbjct: 1 MNPCHVLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHA 60
Query: 85 --IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+FD + +N LIR + + Q + +LR + PN T PFV K+ +
Sbjct: 61 RRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRA 120
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE-TPEKNKSESVLL 201
H + +K G FV L G R + ++F E P +N V+
Sbjct: 121 RAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRN----VVS 176
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--------------------------- 234
WN +I GC++ G +A LF M ++ V + V
Sbjct: 177 WNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHML 236
Query: 235 ------------SLIDGFMRKGDLKKAGELFE---------------------------- 254
+L+D + + GDL A F+
Sbjct: 237 ASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARD 296
Query: 255 ---QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
QMPE+ ++SW AMI+ + Q G + L ++ +M G+ ++ T+ LS + G
Sbjct: 297 WFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGD 356
Query: 312 LEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
L +G +H YI S +D G+ + +L+DMYA+CG ++ + +F E K+ ++W +I
Sbjct: 357 LASGRMIHCYIQDSFSDPGV--TVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVII 414
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
LA+HGR ++A+ +F+ M+ PD F+ +L+AC + G ++ +F +MR Y +
Sbjct: 415 GALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNV 474
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+P V+H+ +V+LL R G + KA++ I MP PD V+WGAL ACR H +I K+A++
Sbjct: 475 KPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIK 534
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 18/284 (6%)
Query: 230 VASWVSLIDGFMRKGD--LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
VAS+ +L R GD L A +F+++P+ ++ ++I +S +G ++AL + +
Sbjct: 42 VASYCALSG---RAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV 98
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
L G+ N+FT+ L AC++ A E + H + + +G AL+ A G++
Sbjct: 99 LRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSL 158
Query: 348 EAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ +F E +++++W MI G A G +A F++M G D F+++L
Sbjct: 159 RDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLV 218
Query: 407 CWYSGQVKLALNFFDSM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
C G +++ M R D + +V++ + G + A + MP
Sbjct: 219 CSKEGNLEVGRLVHCHMLASGSRVDLILG------NALVDMYGKCGDLWMAHRCFDVMP- 271
Query: 462 TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
+ V W ++ CA H A+ + N+ AM C
Sbjct: 272 IKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISC 315
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 211/409 (51%), Gaps = 33/409 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++YA +FD +++ ++ +IR L+ N F + M + VRP+ + +
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + + +G+ +H ++++ N+
Sbjct: 235 FADTANMRMGKAMHAYVIRNS---------------------------------NNEHMG 261
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V L++ +K G+L A +LF + +K V SW ++I G +R L++A LF+
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ V+ WTAM++ ++Q ++A +F QM +GVR T+VS LS CA GAL+ G V
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H+YI + + TALVDMYAKCG+I AA +F E +D+ W A+I G A+HG
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
E+A+ F +M G +P+ F+ +L AC ++G V F+ M + + P ++H+
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+V+LL R G +D+A I MP P+ ++WGAL ACR HK+ ++ ++A
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 550
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 111/251 (44%), Gaps = 14/251 (5%)
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W +I +++ + AL ++ Q+ ++F S L AC +V + G +H ++
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+G AL+ MY +C +E A LVF + E+D+++W+ MI L+ + ++ A++
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH------T 437
++M + P ++++ + +++ Y I S H T
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMG-----KAMHAYVIRNSNNEHMGVPTTT 266
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
++++ ++ G + A N + + V W A+ C + A+ S+ + ++
Sbjct: 267 ALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVM 325
Query: 498 IPQAM--SYCQ 506
I AM +Y Q
Sbjct: 326 IWTAMLSAYAQ 336
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 248/504 (49%), Gaps = 44/504 (8%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
S P +++T I+S++ S N + +QIH ++ + I+ S++Y
Sbjct: 291 SRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNY 350
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F +L +N +I G A + + + F+ +LR + P++ T V ++ +S
Sbjct: 351 ARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS 410
Query: 142 LSL-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L +GR +H +K+G+ D+FV L D+Y + GK A +F +
Sbjct: 411 LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF----HNQDGFDLA 466
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----------NVASWVS--------------- 235
WN +++G + R+A+ LF +M ++ N A
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526
Query: 236 --------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
++D +++ G++K A ++F Q+P V+WT +I+G +NGE E+AL
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+ QM AGV+ +++T + + AC+ + ALE G ++H I + + T+LVDMY
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMY 646
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCGNIE A +F + + W AMI GLA HG E+A+ +F +M G PD F+
Sbjct: 647 AKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFI 706
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC +SG A FDSM+ Y +EP ++H++ +V+ LSR G + +A ++ MP
Sbjct: 707 GVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF 766
Query: 462 TPDFVIWGALFCACRTHKDTKIAK 485
++ L ACR D + +
Sbjct: 767 EASATMYRTLLNACRVQGDKETGE 790
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 175/383 (45%), Gaps = 30/383 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGL 104
++ HA I+ L +T LI+ + S+ A +FD TP ++L +N ++
Sbjct: 33 KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFD-ITPQSDRDLVTYNAILAAY 91
Query: 105 AENSHFQSC-ISHFVF-MLRLSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCLIVKS 158
A +H F + RL + LT + L LL S L VK
Sbjct: 92 AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G+++D FV L ++Y + + R A +FD P ++ V+LWNV++ ++G +
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRD----VVLWNVMMKAYVEMGAGDEV 207
Query: 219 VELF------GMMPKKNVASWVSLIDGFMRKGDLKK--------AGELFEQMPEKGVVSW 264
+ LF G+ P + S +++ G +K ++ A +LF + V W
Sbjct: 208 LGLFSAFHRSGLRP--DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVW 265
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
++ + Q GE +A+ F M+ + V + T + LS A + LE G ++H +
Sbjct: 266 NKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR 325
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ ++ + ++MY K G++ A +FG+ KE DL++W +I G A G E +++
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385
Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
F ++ SG PD ++L AC
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRAC 408
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 111/486 (22%), Positives = 207/486 (42%), Gaps = 31/486 (6%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
H+F L ++ TT + ++ + L++ S S + Q +A I L
Sbjct: 108 HIFRLLRQSVMLTTR--------HTLSPLFKLCLLYGSPSASEALQGYAVKI--GLQWDV 157
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
+ L++ + + I A +FD +++ ++NV+++ E + F R
Sbjct: 158 FVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRS 217
Query: 124 SVRPN----RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+RP+ R V K L R + + D V Y+Q G+
Sbjct: 218 GLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGE 277
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL--- 236
A F + + L + V+++ + + +L ++ G + + +VS+
Sbjct: 278 GWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANS 337
Query: 237 -IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
I+ +++ G + A +F QM E ++SW +I+G +++G E +L +F +L +G+ +
Sbjct: 338 AINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPD 397
Query: 296 DFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
FT+ S L AC+ + + G +VH L + TAL+D+Y+K G +E A L+F
Sbjct: 398 QFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF 457
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF--LAILTACWYS-G 411
DL +W AM+ G + Y +A++ F M G + D F A C
Sbjct: 458 HNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQ 517
Query: 412 QVKLALNFFDSMRFDY--FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
Q K MRF Y F+ ++++ + G++ A N++P +PD V W
Sbjct: 518 QGKQIHAVVIKMRFHYDLFVISG------ILDMYLKCGEMKSARKVFNQIP-SPDDVAWT 570
Query: 470 ALFCAC 475
+ C
Sbjct: 571 TVISGC 576
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 89/428 (20%), Positives = 166/428 (38%), Gaps = 95/428 (22%)
Query: 122 RLSVRPNRLT---YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
+ SV P+ L + + ++A L+ LG+ H +IV SG+ D +V +L MY + G
Sbjct: 4 KCSVSPSSLLPQWFSILRHAIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG 62
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL------RKAVELFGMM------- 225
A K+FD TP+ ++ ++ +N ++ + G L +A +F ++
Sbjct: 63 SLFSARKLFDITPQSDR--DLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLT 120
Query: 226 -----------------PKKNVA----------SWV-----SLIDGFMRKGDLKKAGELF 253
P + A W +L++ + + +++A LF
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLF 180
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
++MP + VV W M+ + + G ++ L +F +G+R + C V +
Sbjct: 181 DRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD----------CVSVRTIL 230
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
GV G K L + A A+ +F + D+ W +
Sbjct: 231 MGV-----------GKKTVFERELEQVRAY------ATKLFVCDDDSDVTVWNKTLSSYL 273
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRF--DYFIE 430
G +A+ F+ M+ S D ++ IL+ ++L + +RF D F+
Sbjct: 274 QAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVS 333
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
+ +N+ + G V+ A +M E D + W + C A+ L+
Sbjct: 334 VA----NSAINMYVKAGSVNYARRMFGQMKEV-DLISWNTVISGC--------ARSGLE- 379
Query: 491 SCSLNLSI 498
CSL L I
Sbjct: 380 ECSLRLFI 387
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q +QIHA I+ N + T L+ + +I+ A +F +++ ++N +I GL
Sbjct: 618 EQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGL 677
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
A++ + + ++ F M V P+R+T+ V + + L S + + GVE +
Sbjct: 678 AQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPE 737
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL----RKAV 219
L D + G + A KV P + S ++ L+N C G R A
Sbjct: 738 IEHYSCLVDALSRAGHIQEAEKVVSSMPFE---ASATMYRTLLNACRVQGDKETGERVAE 794
Query: 220 ELFGMMPKKNVA 231
+LF M P + A
Sbjct: 795 KLFTMDPSDSAA 806
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 245/488 (50%), Gaps = 42/488 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
QIHA ++ + LIS S + A +FD+ K+ +N +I G N
Sbjct: 224 QIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVING 283
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
F M +P T+ V KS ASL L L R LHC +KSG+ + V
Sbjct: 284 QDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV-- 341
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L + V L K + F + +SV+ W +I+G + G +AV LF +M ++
Sbjct: 342 -LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRRE 400
Query: 229 NV---------------ASWVS--------------------LIDGFMRKGDLKKAGELF 253
V A ++S L+D F++ G++ A ++F
Sbjct: 401 GVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC-AKVGAL 312
E + K V++W+AM+ G++Q GE E+A +F Q+ G++ N+FT S ++AC A ++
Sbjct: 461 ELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASV 520
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
E G + H Y + ++LV +YAK GNIE+A +F KE+DL++W +MI G
Sbjct: 521 EQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A HG+ ++A++ F++M E D F+ +++AC ++G V N+F+ M D+ I P+
Sbjct: 581 AQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPT 640
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
++H++ +++L SR G + KA++ IN MP P +W + A R H++ ++ K+A +
Sbjct: 641 MEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKII 700
Query: 493 SLNLSIPQ 500
SL PQ
Sbjct: 701 SLE---PQ 705
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/491 (24%), Positives = 203/491 (41%), Gaps = 49/491 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
Q+H Q + L + L+ + ++ +FD +++ +N L+ G + N
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWN 181
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
F M RP+ T V ++A+ +++G +H L+VK G E + V
Sbjct: 182 RFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC 241
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
L M + G R A VFD K+ + WN +I G G +A E F M
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDS----VSWNSMIAGHVINGQDLEAFETFNNMQL 297
Query: 226 --PKKNVASWVSLID--------GFMRK---------------------------GDLKK 248
K A++ S+I G +R ++
Sbjct: 298 AGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDD 357
Query: 249 AGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF M + VVSWTAMI+G+ QNG+ ++A+ +F M GV+ N FT + L+
Sbjct: 358 AFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQH 417
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
V E +H + ++ ++GTAL+D + K GNI A VF + KD++ W+A
Sbjct: 418 AVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSA 473
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
M+ G A G E+A + F ++ G +P+ F +I+ AC F +
Sbjct: 474 MLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKL 533
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ ++ + +V L ++ G ++ A + E D V W ++ H K A
Sbjct: 534 RLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKER-DLVSWNSMISGYAQHGQAKKALEV 592
Query: 488 LQSSCSLNLSI 498
+ NL +
Sbjct: 593 FEEMQKRNLEV 603
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 180/435 (41%), Gaps = 56/435 (12%)
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+A +FD ++L N L+ + Q + FV + R + P+ T V A
Sbjct: 54 FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
++G +HC VK G+ + V L DMY + G R +VFDE +++ V+
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD----VV 169
Query: 201 LWNVLINGCSKIGYLRKAVELFGMM------PKKNVASWV-------------------- 234
WN L+ G S + + ELF +M P S V
Sbjct: 170 SWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALV 229
Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
SLI + G L+ A +F+ M K VSW +MI G NG+ +A
Sbjct: 230 VKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAF 289
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
F M AG + T S + +CA + L +H + + TAL+
Sbjct: 290 ETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVAL 349
Query: 342 AKCGNIEAA----SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
KC I+ A SL+ G + +++WTAMI G +G +QA+ F M G +P+
Sbjct: 350 TKCKEIDDAFSLFSLMHG---VQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNH 406
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
+ ILT V ++ + ++ +Y E S T +++ ++G + A+ +
Sbjct: 407 FTYSTILTV---QHAVFISEIHAEVIKTNY--EKSSSVGTALLDAFVKIGNISDAVK-VF 460
Query: 458 KMPETPDFVIWGALF 472
++ ET D + W A+
Sbjct: 461 ELIETKDVIAWSAML 475
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 8/236 (3%)
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+R D + A +LF+Q P + + ++ +S+ + ++AL +F + +G+ + +T+
Sbjct: 46 LLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTM 105
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGET 357
LS CA G+ V + C GL ++G +LVDMY K GN+ VF E
Sbjct: 106 SCVLSVCA--GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEM 163
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++D+++W +++ G + + +Q + F M G PD ++ A G V + +
Sbjct: 164 GDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGM 223
Query: 418 NFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ + E V + ++++LS+ G + A + M E D V W ++
Sbjct: 224 QIHALVVKLGFETERLVCNS--LISMLSKSGMLRDARVVFDNM-ENKDSVSWNSMI 276
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 185/299 (61%), Gaps = 1/299 (0%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G RKA +F M +KN +W ++IDG+MR G + A +LF++MPE
Sbjct: 52 VMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPE 111
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+ALA F +M +GV+ + +++AL+AC +GAL G+ +
Sbjct: 112 RDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWI 171
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 172 HRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHA 231
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +P+ F L AC + G V+ L +F SM+ DY I P ++H+
Sbjct: 232 HESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGC 291
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNL 496
+V+L SR G+++ AL + MP P+ V+ G+L ACRT +T +A+ ++ LN+
Sbjct: 292 LVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNV 350
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 119/310 (38%), Gaps = 70/310 (22%)
Query: 44 TKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+K+ R A+++ + + +T +I + +D A+ +FD ++L + +I
Sbjct: 63 SKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMIN 122
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G + + ++ F M V+P+ + + +L LS G +H +V +
Sbjct: 123 GFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKN 182
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ V L D+Y + G A +VFD+
Sbjct: 183 NVRVSNSLIDLYCRCGCVEFARQVFDK--------------------------------- 209
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
M K+ V SW S+I GF + NG A ++L
Sbjct: 210 --MEKRTVVSWNSVIVGF-------------------------------AANGHAHESLV 236
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDM 340
F +M + G + N T AL+AC VG +E G+R + D+ + I LVD+
Sbjct: 237 YFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMK-RDYRISPRIEHYGCLVDL 295
Query: 341 YAKCGNIEAA 350
Y++ G +E A
Sbjct: 296 YSRAGRLEDA 305
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/376 (34%), Positives = 201/376 (53%), Gaps = 35/376 (9%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M V P+ T FV K+ LS + G+ +H L K G + F
Sbjct: 1 MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLF-------------- 46
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
L N+++N G + A+ LF MP+++ +W +I
Sbjct: 47 ---------------------LQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQ 85
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
++GD+ A F +MP K V SWT+MI+GF Q G+ +A+ +F ++ D VR N+ TV
Sbjct: 86 LAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTV 145
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
VS L+ACA +G L+ G VH Y + + F + L+DMY KCG +E A VF E +E
Sbjct: 146 VSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEE 205
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
+ +++W+AMI GLA+HG+ E+A+ F +M+ G +P+G F+ +L AC + G + F
Sbjct: 206 RTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRF 265
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F SM DY + P ++H+ VV+L SR G +++A FI MP P+ V+WGAL C+ HK
Sbjct: 266 FASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHK 325
Query: 480 DTKIAKIALQSSCSLN 495
+ +A+ A++ L+
Sbjct: 326 NIDLAEEAIKHLSELD 341
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 26/271 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I+ + ID A F KN+ + +I G + I F+ + +VRPN
Sbjct: 82 VIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPN 141
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T V + A L L LGR +H KSG + + V L DMYV+ G A +VF
Sbjct: 142 EVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFY 201
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKG 244
E E+ +V+ W+ +I G + G +A+ LF M K N +++ L+ G
Sbjct: 202 EMEER----TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMG 257
Query: 245 DLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + F M + GV+ + +++ FS+ G E+A M ++ N
Sbjct: 258 LIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM---PIKPNGVV- 313
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLK 330
GAL G +VH I + +K
Sbjct: 314 ---------WGALLGGCKVHKNIDLAEEAIK 335
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 243/477 (50%), Gaps = 37/477 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ HA ++ + F + T L+ ++ L +F + +N + ++ ++ G A
Sbjct: 138 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATR 197
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPF--VSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ I F LR + Y F V S+A+ + LGR +HC+ +K+G+
Sbjct: 198 GRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVA 257
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKS----------------ESVLLWNVL---- 205
+ L MY + A K+FD + ++N E+V L++ +
Sbjct: 258 LSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG 317
Query: 206 -----------INGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAG 250
+N CS I YL + +L + K +++ + +L+D + + G L A
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADAR 377
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+ F+ + E+ V WT++I+G+ QN + E+AL ++ +M AG+ ND T+ S L AC+ +
Sbjct: 378 KGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G +VH + + FGL+ IG+AL MY+KCG++E +LVF T KD+++W AMI
Sbjct: 438 TLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMIS 497
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GL+ +G+ ++A++ F++M+ G EPD F+ I++AC + G V+ +F+ M ++
Sbjct: 498 GLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLD 557
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P V H+ +V+LLSR GQ+ +A FI +W L AC+ H ++ A
Sbjct: 558 PKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYA 614
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 226/495 (45%), Gaps = 58/495 (11%)
Query: 27 NNITETHIISLIHSSNSTKQL--RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
N T T + L H S + R +H QII + L++ + + A S
Sbjct: 11 NPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHS 70
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSV 139
IF+ K++ +N LI G ++N S S+ V L +R PN T + K+
Sbjct: 71 IFNAIICKDVVSWNSLITGYSQNGGISS--SYTVMQLFREMRAQDILPNAYTLAGIFKAE 128
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+SL ++GR H L+VK D +V L MY + G KVF PE+N
Sbjct: 129 SSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN----T 184
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKN------------------------------ 229
W+ +++G + G + +A+++F + ++
Sbjct: 185 YTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244
Query: 230 -----------VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
VA +L+ + + L +A ++F+ ++ ++W+AM+ G+SQNGE+
Sbjct: 245 CITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESL 304
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ +F +M AG++ +++T+V L+AC+ + LE G ++H+++ F TALV
Sbjct: 305 EAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALV 364
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAK G + A F +E+D+ WT++I G + E+A+ +++M +G P+
Sbjct: 365 DMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDP 424
Query: 399 VFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
++L AC ++L +++ + +E + + + + S+ G ++ N +
Sbjct: 425 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG--SALSTMYSKCGSLEDG-NLVF 481
Query: 458 KMPETPDFVIWGALF 472
+ D V W A+
Sbjct: 482 RRTPNKDVVSWNAMI 496
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 47/393 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQIH I + L ++ L++ S +S++ A +FD +N ++ ++ G ++N
Sbjct: 241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQN 300
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M ++P+ T V + + + L G+ LH ++K G E F
Sbjct: 301 GESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT 360
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------- 208
L DMY + G A K FD E++ V LW LI+G
Sbjct: 361 TALVDMYAKAGCLADARKGFDCLQERD----VALWTSLISGYVQNSDNEEALILYRRMKT 416
Query: 209 ----------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
CS + L ++ G K V +L + + G L+
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLED 476
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+F + P K VVSW AMI+G S NG+ ++AL +F +ML G+ +D T V+ +SAC+
Sbjct: 477 GNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSH 536
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTW 365
G +E G N +S + GL + +VD+ ++ G + EA + + L W
Sbjct: 537 KGFVERGWFYFNMMS-DQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLW 595
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
++ HG+ E + +K+M G+ T
Sbjct: 596 RILLSACKNHGKCELGVYAGEKLMALGSRESST 628
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 143/507 (28%), Positives = 255/507 (50%), Gaps = 71/507 (14%)
Query: 52 AQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHF------TPKNLHIFNVLIR 102
A+ I + +TT+++ S S + ++A IF + ++ ++N +I+
Sbjct: 7 ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIK 66
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
+ ++ + F M+ SV ++ + V K+ + L + G +H + K+G+
Sbjct: 67 SFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYS 126
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------- 194
D F++ L +Y++ G A +VFD P+++
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 186
Query: 195 -KSESVLLWNVLING----------CSKI-----------------GYLR-----KAVEL 221
+ ++++ WN +I+G SK+ GY++ A L
Sbjct: 187 REKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSL 246
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F +MP+K+V +W ++IDG+ + G + +A +LF++MP++ VV++ +M+ G+ QN +A+
Sbjct: 247 FDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAI 306
Query: 282 AMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+F M ++ + ++ T+V LSA A++G L V +H YI N F L G +G AL+D
Sbjct: 307 GIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDT 366
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y+KCG+I+ + VF E + K + W AMI GLAIHG E A ++ +PD F
Sbjct: 367 YSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITF 426
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+ +L AC +SG VK L F+ MR + IEP ++H+ +V++LSR G ++ A N I +MP
Sbjct: 427 IGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMP 486
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIA 487
P+ VIW AC HK+ + ++
Sbjct: 487 IEPNDVIWRTFLTACSNHKEFETGELV 513
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRL-TTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V N+ AI ++ K SH + T ++S I + IH I+ +
Sbjct: 293 MAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNK 352
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
++ LI + S SI ++ +F+ K++ +N +I GLA + +S +
Sbjct: 353 FRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLL 412
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYV 175
+ + S++P+ +T+ V + + L+ GL C + K +E + D+
Sbjct: 413 QIEKRSIKPDDITFIGVLNACSHSGLVK--EGLLCFELMRRKHKIEPKLQHYGCMVDILS 470
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G A + +E P E N ++W + CS
Sbjct: 471 RSGSIELAKNLIEEMPIEPND----VIWRTFLTACS 502
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 245/487 (50%), Gaps = 48/487 (9%)
Query: 15 PTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
PT N S ++ H +SLI + TKQL+QIHAQ++ LF ++LI++A
Sbjct: 18 PTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77
Query: 74 SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRL 130
+L S+DYA +FD NL+ +N LIR A +S+ + F+ ML S P++
Sbjct: 78 ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
T+PF+ K+ + L L G+ H +++K + D F+ L Y + G+ ++VF
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV-SLIDGFMRKGDLKKA 249
P ++ V+ WN +I + G +A+ELF M +N + +++D + + G ++ A
Sbjct: 198 PRRD----VVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDA 253
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
LF++MPEK +VSWT M+ G+++ GE + A +F M + + A + ++SA C K
Sbjct: 254 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWN-ALISAYEQCGKP 312
Query: 310 G-ALEA--GVRVHNYISCNDFGLKGA------IGTALVDMYAKCGNIEAASLVFGETKEK 360
ALE +++ ++ LK + T+L+DMY KCG+++ A +VF + K
Sbjct: 313 KEALELFHELQLSKTAKPDEVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 372
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D+ W+AMI GLA+HG + AI F KM +P+ F IL AC + G V+ FF
Sbjct: 373 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 432
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+ M Y KMP P +WGAL AC H++
Sbjct: 433 NQMELVY-----------------------------GKMPMAPAASVWGALLGACTIHEN 463
Query: 481 TKIAKIA 487
+A+ A
Sbjct: 464 VVLAEQA 470
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 245/496 (49%), Gaps = 46/496 (9%)
Query: 34 IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
I SL+ + S L +Q+H+ ++ + I L+ I AL IF
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ ++N+++ + S F M+ VRPN TYP + ++ ++LG
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H L +K+G E D +V L DMY + G A ++ + K+ V+ W +I G
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD----VVSWTSMIAGYV 422
Query: 211 KIGYLRKAVE------LFGMMPKK---------------------------------NVA 231
+ + ++A+E LFG+ P +V+
Sbjct: 423 QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS 482
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
W +L++ + R G K+A LFE + K ++W M++GF+Q+G E+AL +F +M AG
Sbjct: 483 IWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAG 542
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V+ N FT VS++SA A + ++ G ++H + + + AL+ +Y KCG+IE A
Sbjct: 543 VKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAK 602
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+ F E E++ ++W +I + HG +A+ F +M G +P+ F+ +L AC + G
Sbjct: 603 MQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 662
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ L +F SM ++ I P H+ VV++L R GQ+D+A F+ +MP + + ++W L
Sbjct: 663 LVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTL 722
Query: 472 FCACRTHKDTKIAKIA 487
ACR HK+ +I ++A
Sbjct: 723 LSACRVHKNIEIGELA 738
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/477 (25%), Positives = 213/477 (44%), Gaps = 53/477 (11%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+Q R +HAQ+ + + + LI+ S+ A +F + FN LI
Sbjct: 160 EQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRH 219
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
A+ + +S + F M P+ +T + + AS+ L+ G+ LH ++K+G+ D
Sbjct: 220 AQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDY 279
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+ L D+YV+ G A ++F N V+LWN+++ +I L K+ +LF
Sbjct: 280 IIEGSLLDLYVKCGVIVEALEIFKSGDRTN----VVLWNLMLVAYGQISDLAKSFDLFCQ 335
Query: 225 MPKKNVAS-------------------------------------WVS--LIDGFMRKGD 245
M V +VS LID + + G
Sbjct: 336 MVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW 395
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
L KA + E + K VVSWT+MI G+ Q+ ++AL F M G+ ++ + SA+SA
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
CA + A+ G ++H+ + + + +I ALV++YA+CG + A +F + KD +TW
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITW 515
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
M+ G A G YE+A++ F KM +G + + F++ ++A +K ++
Sbjct: 516 NGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATV-- 573
Query: 426 DYFIEPSVKHHTVVVN----LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
I+ T V N L + G ++ A +M E + V W + +C H
Sbjct: 574 ---IKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSER-NHVSWNTIITSCSQH 626
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 187/460 (40%), Gaps = 43/460 (9%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IHA+ I L RI L+ K + A +F+ + ++ + ++ G A N
Sbjct: 64 IHAKAITCGL-GEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + + M V P V + +L GR +H + K G + V
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNK---------------SESVLL---------WN- 203
L +Y++ G A +VF E P ++ ES L W
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242
Query: 204 ------VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
L+ C+ IG L K +L GM P + SL+D +++ G + +A E
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEG--SLLDLYVKCGVIVEALE 300
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+F+ VV W M+ + Q + K+ +F QM+ AGVR N+FT L C G
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ G ++H F + L+DMY+K G ++ A + + KD+++WT+MI G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
H ++A++ FK M G PD + ++AC ++ + +
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGY-SA 479
Query: 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V +VNL +R G+ +A + + E D + W +
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAI-EHKDKITWNGM 518
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 12/244 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + +KG +++A +FEQ+ + VSW AM++G+++NG E+A+ ++ QM +GV
Sbjct: 83 LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ + S LSAC K E G VH + + +G AL+ +Y + G++ A VF
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E D +T+ +I A G E A++ F++M SG PD ++L AC G +
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262
Query: 416 ALNFFD-----SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
M DY IE S +++L + G + +AL I K + + V+W
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGS------LLDLYVKCGVIVEALE-IFKSGDRTNVVLWNL 315
Query: 471 LFCA 474
+ A
Sbjct: 316 MLVA 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSAC-AKVGAL 312
M + S + GF + + EK L++F + G+ + DF AL C V
Sbjct: 1 MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFAC--ALRECRGSVKHW 58
Query: 313 EAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+H I+C G G L+D+YAK G ++ A VF + +D ++W AM+ G
Sbjct: 59 PLVPVIHAKAITCG-LGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSG 117
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A +G E+A+ + +M SG P V ++L+AC
Sbjct: 118 YARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSAC 153
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 13/238 (5%)
Query: 32 THIISLIHSSN--STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T + S+ S+N KQ +QIHA +I + + + LIS SI+ A F
Sbjct: 549 TFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEM 608
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +N +I +++ + F M + ++PN +T+ V + + + L+ G
Sbjct: 609 SERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGL 668
Query: 150 G-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
G + + G+ + D+ + G+ A K +E P S + ++W L++
Sbjct: 669 GYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMP---VSANAMVWRTLLSA 725
Query: 209 CS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
C +IG L A L + P + AS+V L + + G + + M ++GV
Sbjct: 726 CRVHKNIEIGEL-AAKYLLELEPHDS-ASYVLLSNAYAVTGKWACRDHVRKMMKDRGV 781
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 143/443 (32%), Positives = 226/443 (51%), Gaps = 35/443 (7%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIR 102
KQ +QIHA I +NL S I++++++ +L D YA ++F H N+ +N +I
Sbjct: 2 KQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSIIT 61
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
NS F F ML ++RPN T+ + K+ SLS L + L +K G
Sbjct: 62 SYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSL---EQVFTLSMKLGNSS 118
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D + + + + + A +VFDE +N V+ W L++G G + +A ++F
Sbjct: 119 DVYFVSSVINAFSKHSAIHLARQVFDECSNRN----VVCWTSLVSGYCSCGLVNEARDVF 174
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +N AS+ +++ G++R G + +LF ++ +K +K A
Sbjct: 175 DKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKK------------------DKGCA 216
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
++ N +VS L+AC VGA E G +H+Y+ N +GTAL+D Y
Sbjct: 217 C--------LKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYM 268
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG ++ A VF + KD+ TW+AMI GLAI+G + A++ F+KM G +P+ F+
Sbjct: 269 KCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVG 328
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+LTAC + + F M Y I PS++H+ VV++L+R GQV KAL FIN M
Sbjct: 329 VLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIE 388
Query: 463 PDFVIWGALFCACRTHKDTKIAK 485
PD IWG+L C H ++ +
Sbjct: 389 PDGAIWGSLLNGCLMHGHYELGQ 411
>gi|108862694|gb|ABA98288.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 572
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/460 (30%), Positives = 231/460 (50%), Gaps = 19/460 (4%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIF 97
+S + RQ+HA +++ L +R L++S+S S +A ++FD N++++
Sbjct: 20 TSPAAAAARQLHAHLLIRGLPLPARAAVALVASSS---SPRHARAVFDSVPAASANVYLW 76
Query: 98 NVLIRGLAENSHFQ---------SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
I A ++ ++ F ML RPN T V K + + + G
Sbjct: 77 TATISAYARHASSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEG 136
Query: 149 RGLHCLIVKSGVEYDAF-VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
+H + K+G+ + V L D+Y +G A +VFDE P KN V++ N ++
Sbjct: 137 LQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKN----VVVGNTMVA 192
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+ G + A E+F M +++ SW +L+ G++ GD ELF++M + V SW M
Sbjct: 193 CNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTM 252
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I S+ G + +F +M G + T+ +SACA++G+L +VH + +
Sbjct: 253 IAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCV 312
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ + +L+DMYAKCG I A +F ET KD +++ MI A HG A+ F
Sbjct: 313 EMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNA 372
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ SG +PD FL +L+AC ++G V+ N+F+ M+ Y ++ S H+ VV+L R G
Sbjct: 373 MVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAG 432
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+++A F+ MP P +WGAL ACR H + +IA
Sbjct: 433 LIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIA 472
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 179/285 (62%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK ++KA +F M KN +W ++IDG+MR G + A ++F++MPE
Sbjct: 98 VMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPE 157
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+ALA F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 158 RDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWV 217
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 218 HRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA 277
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F +M+ D+ I P ++H+
Sbjct: 278 HESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGC 337
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+V+L SR G++++AL + MP P+ V+ G+L ACRTH + +
Sbjct: 338 LVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTV 382
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 46/259 (17%)
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--G 310
Q + +VSWT+ I ++NG +A F M AGV N T ++ LS C G
Sbjct: 17 LNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSG 76
Query: 311 ALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLV-------------- 353
+ G +H Y +C G +GTA++ MY+K ++ A LV
Sbjct: 77 SEALGDLLHGY-ACK-LGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNT 134
Query: 354 -----------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
F + E+DL++WTAMI G G +E+A+ +F++M SG +PD
Sbjct: 135 MIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPD 194
Query: 397 GTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
+A L AC G + L + S F + +VK +++L R G V+ A
Sbjct: 195 YVAIIAALNACTNLGALSFGLWVHRYVMSQDF----KNNVKVSNSLIDLYCRCGCVEFAR 250
Query: 454 NFINKMPETPDFVIWGALF 472
+KM E V W ++
Sbjct: 251 EVFDKM-EKRTVVSWNSVI 268
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 137/320 (42%), Gaps = 21/320 (6%)
Query: 44 TKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+K R A+++ + + +T +I + +D A+ +FD ++L + +I
Sbjct: 109 SKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMIN 168
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G + + ++ F M V+P+ + + +L LS G +H ++ +
Sbjct: 169 GFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN 228
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ V L D+Y + G A +VFD K + +V+ WN +I G + G +++ F
Sbjct: 229 NVKVSNSLIDLYCRCGCVEFAREVFD----KMEKRTVVSWNSVIVGFAANGNAHESLVYF 284
Query: 223 GMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQ 273
M K + ++ + G +++ F+ M +S + +++ +S+
Sbjct: 285 RKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR 344
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA-GVRVHNYISCNDFGLKGA 332
G E+AL + M ++ N+ + S L+AC G R+ ++S D +KG
Sbjct: 345 AGRLEEALKVVQSM---PMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLS--DVNVKGH 399
Query: 333 IG-TALVDMYAKCGNIEAAS 351
L +MYA G E AS
Sbjct: 400 SNYVILSNMYAADGKWEGAS 419
>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
Length = 677
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 214/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ ++ A +F+ +N+ + ++RG + ++ + F+ M R V+ N +T V
Sbjct: 209 YGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVV 268
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
A SL+ G +HCL+ + G D F+ L MY + G A +VF +K+
Sbjct: 269 LDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKD- 327
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + A LF +MP+++ SW S++ GF +G ++++ ELFEQ
Sbjct: 328 ---IVSWNSLITGYVQNNMIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVELFEQ 384
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K ++WTA+I+ F NG + F QM G R N LSA A + L G
Sbjct: 385 MPVKDDIAWTAVISSFIANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAMLNQG 444
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
++ H Y + A+ +LV MYAKCG + A VF + L+ +MI A H
Sbjct: 445 LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCIRNPSLVAINSMISAFAQH 504
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A++ F +M Y G P+ FL ILTAC +G V+ N+F+SMR Y I+P+ H
Sbjct: 505 GLAEDALKLFNRMQYDGQRPNHVTFLGILTACARAGLVQQGYNYFESMRSVYGIQPNPDH 564
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +VNLL G +D+AL IN MP+ W AL + H + +AK+A Q
Sbjct: 565 YTCMVNLLGHAGFLDEALEMINSMPQKDYPDAWAALLSSSSLHSNLDLAKLAAQ 618
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 26/361 (7%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L++S I A +FD +++ + L+ AE F S F M P
Sbjct: 45 LLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDM------PR 98
Query: 129 RLTYPFVSKSVASLSLLSL----GR--GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
R +V+ +LLSL GR H L K+ + V + + + G R
Sbjct: 99 R-------NAVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGL-ARAGMLRE 150
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A V+ E P + + + N +I G + G + A+ +F M ++V SW S++DG +
Sbjct: 151 AQAVYGEMPPRLRDP--VGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCK 208
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G + +A LFE MPE+ VVSWT+M+ G+ + G + L +F M GV+ N T+
Sbjct: 209 YGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVV 268
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L CA+ + G++VH ++ F + +L+ MY++ G + A VF K+KD+
Sbjct: 269 LDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKDI 328
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W ++I G + E A FK M E D + +++ G ++ ++ F+
Sbjct: 329 VSWNSLITGYVQNNMIEDAHVLFKLM----PERDAISWTSVVVGFANRGWMRESVELFEQ 384
Query: 423 M 423
M
Sbjct: 385 M 385
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ + G ++ A +LF MP+++V SW +L+ + GD A +F+ MP + V
Sbjct: 43 NALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMPRRNAV 102
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SW A+++ + G A A+F + A + V+ ++ A+ G L V+ +
Sbjct: 103 SWNALLSLYLGAGRPAAAHALFCK--TPAKNAVSYGVI--ITGLARAGMLREAQAVYGEM 158
Query: 323 SCNDFGLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
L+ +G+ A++ Y + G I+ A VF +D+++W++M+ GL +G +A
Sbjct: 159 PPR---LRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSEA 215
Query: 382 IQYFKKM 388
+ F+ M
Sbjct: 216 RRLFEAM 222
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 50/255 (19%)
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
N A +L+ + R+G ++ A +LF++MP + V+SWTA++ +++ G+ A +F M
Sbjct: 38 NRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMP 97
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
N +S N AL+ +Y G
Sbjct: 98 R-----------------------------RNAVSWN----------ALLSLYLGAGRPA 118
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
AA +F +T K+ +++ +I GLA G +A + +M +P G+ A++
Sbjct: 119 AAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYGEMPPRLRDPVGSN--AMILGYL 176
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+G++ +AL FD+M V + +V+ L + G V +A MPE + V W
Sbjct: 177 RAGEIDMALRVFDTM-----AARDVISWSSMVDGLCKYGTVSEARRLFEAMPER-NVVSW 230
Query: 469 GAL---FCACRTHKD 480
++ + C +++
Sbjct: 231 TSMVRGYVKCGMYRE 245
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 184/334 (55%), Gaps = 7/334 (2%)
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LHC ++K G D +VR L MY + G+ A K FDE P+KN + WN L+
Sbjct: 3 LHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKN----AVSWNALVGAHR 58
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
A + MP +N++ W + I +R G + +A +F +MPE+ VSW ++I+G
Sbjct: 59 AAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISG 118
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+++ G+ +AL +F +M + G++ + T+V L ACAK+G L+ G +H +
Sbjct: 119 YTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVAD 178
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
G +G AL+DMYAKCG ++ A VF +D+ W AMI G ++HG +A++ F M
Sbjct: 179 GLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM-- 236
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
EP+ FL +LTAC + G V +F+SM DY I P VKH+ ++++L R G+++
Sbjct: 237 -KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYGCMIDMLCRYGKIE 295
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+A I + P T V+W L ACR H +A
Sbjct: 296 EAYLMIKENPSTASSVLWKMLLAACRVHGHIDLA 329
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 23/251 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A IF ++ +N LI G + + + F M ++P LT V +
Sbjct: 94 MDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGA 153
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + L LG +H + G+ D V L DMY + G A KVFD ++
Sbjct: 154 CAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRD---- 209
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ WN +I G S G R+A+ELF M + N +++ ++ G + + + F M
Sbjct: 210 ITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMI 269
Query: 258 EK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E V + MI+ + G+ E+A M ++ N T S L L
Sbjct: 270 EDYRIVPYVKHYGCMIDMLCRYGKIEEAYLM--------IKENPSTASSVLWK-----ML 316
Query: 313 EAGVRVHNYIS 323
A RVH +I
Sbjct: 317 LAACRVHGHID 327
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 9/176 (5%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH + + A + LI + +D A +FD + +++ +N +I G + +
Sbjct: 165 NIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHG 224
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + F M + PN +T+ V + + L++ GR +++ +V+
Sbjct: 225 CSREALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIED-YRIVPYVKH 280
Query: 169 H--LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ + DM + GK A+ + E P + S +LW +L+ C G++ A F
Sbjct: 281 YGCMIDMLCRYGKIEEAYLMIKENPS---TASSVLWKMLLAACRVHGHIDLAYMFF 333
>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 822
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 237/485 (48%), Gaps = 43/485 (8%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+H+ I+ +++ + LI++ S+ S+D A S+F+ K++ ++ ++ EN
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
F+ + M PN T+ K+ L + +H I+K+ E D V V
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---- 225
L +Y QLG AFKVF+E P+ + V+ W+ +I + G+ KAV++F M
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKND----VVPWSFMIARFCQNGFCNKAVDIFIRMREGF 343
Query: 226 --PKKNVASWV---------------------------------SLIDGFMRKGDLKKAG 250
P + S + +LID + + + A
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAV 403
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+LF ++ K VVSW +I G+ GE KAL MF + L V + T SAL ACA +
Sbjct: 404 KLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLA 463
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
++E GV+VH + + A+ +L+DMYAKCG+I+ A VF E + D+ +W A+I
Sbjct: 464 SMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALIS 523
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G + HG QA++ F M S +P+G FL +L+ C +G + + F+SM D+ IE
Sbjct: 524 GYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIE 583
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+T +V L R GQ+DKA+N I +P P +IW A+ A + + A+ + +
Sbjct: 584 PCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEE 643
Query: 491 SCSLN 495
+N
Sbjct: 644 ILKIN 648
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 124/290 (42%), Gaps = 31/290 (10%)
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN----- 203
+ +HC I+K G D F L + YV+ G + A +FDE PE+N V L
Sbjct: 69 KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQ 128
Query: 204 ---VLINGCSKIGY------LRKAVELFGMMPKKNVASWV-----------------SLI 237
L + + G+ ++LF + K + W+ +LI
Sbjct: 129 DPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALI 188
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ + G + A +FE + K +V W +++ + +NG E +L + +M G N++
Sbjct: 189 NAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNY 248
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T +AL A +GA VH I + L +G L+ +Y + G++ A VF E
Sbjct: 249 TFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ D++ W+ MI +G +A+ F +M P+ +IL C
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGC 358
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 11/242 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L++ +++ G K A LF++MPE+ VS+ + G++ + + ++ ++ G N
Sbjct: 90 LLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELN 145
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
S L + E +H+ I + +G AL++ Y+ CG++++A VF
Sbjct: 146 PHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFE 205
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD++ W ++ +G +E ++Q +M G P+ F L A G
Sbjct: 206 GILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHF 265
Query: 416 ALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG---AL 471
A + ++ Y ++P V ++ L +++G + A N+MP+ D V W A
Sbjct: 266 AKSVHGQILKTCYELDPRVG--VGLLQLYTQLGDMSDAFKVFNEMPKN-DVVPWSFMIAR 322
Query: 472 FC 473
FC
Sbjct: 323 FC 324
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 231/453 (50%), Gaps = 37/453 (8%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
L+ ++ +++QIH ++ L + + LI + + A +FD + +N+
Sbjct: 71 LLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVV 130
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N +I G A+ + + F M + P+ T + L LG+ +H I
Sbjct: 131 SYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQI 190
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
KS + + L DMYV+ + + A KVFD EK+ + WN +I G +K+G L
Sbjct: 191 EKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKD----TVSWNTIIAGYAKVGEL 246
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
A +LF +P +++ SW SLI G+ + GD LF +M F++N
Sbjct: 247 ELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM--------------FAEN- 291
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
V+ + T+V+ +SA A++GAL+ G +H ++ G+
Sbjct: 292 ----------------VKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGS 335
Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
AL+DMY KCG+IE A ++F + EKD+ TWT MI G A HG +A++ F +M + T+P
Sbjct: 336 ALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF-SVMQAETKP 394
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+ F+++L AC +SG V L F SM+ Y IEP V+H+ +V+LL R G++ A+
Sbjct: 395 NDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGV 454
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I KMP P IWGA+ ACR H++ ++A+ AL
Sbjct: 455 IEKMPMEPSRSIWGAVLSACRMHRNMELAERAL 487
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/526 (28%), Positives = 261/526 (49%), Gaps = 74/526 (14%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHF-- 89
I L+ +++ + +IHA++I L +S ++T+++ +++ ++A +F +
Sbjct: 19 IQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHV 78
Query: 90 ---TP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+P ++ ++N +I+ + + + F ML V ++ + V K+ + L
Sbjct: 79 CSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRL 138
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLA------------------------------- 171
+ G +H ++ K+G+ D F++ L
Sbjct: 139 GFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMI 198
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKS------------------------------ESVLL 201
D YV+ G A ++FD P + K+ + ++
Sbjct: 199 DGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLIS 258
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +I+G K G + A +LF MP+++V +W ++IDG+ + G + +A LF+QMP + V
Sbjct: 259 WNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDV 318
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VS+ +M+ G+ QN +AL +F M ++ + ++ T+V LSA A++G L + +H
Sbjct: 319 VSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 378
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI F L G +G AL+DMY+KCG+I+ A LVF + K + W AMI GLAIHG E
Sbjct: 379 YIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 438
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A ++ +PD F+ +L AC +SG VK L F+ MR + IEP ++H+ +V
Sbjct: 439 AFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 498
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
++LSR G ++ A N I +MP P+ VIW AC HK+ + ++
Sbjct: 499 DILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGEL 544
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 15/250 (6%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
K SH + T ++S I + +H I+ F ++ LI S SI
Sbjct: 346 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSI 405
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+A+ +F+ K++ +N +I GLA + +S + + R S++P+ +T+ V +
Sbjct: 406 QHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNAC 465
Query: 140 ASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNK 195
+ L+ GL C + K +E + D+ + G A + E P E N
Sbjct: 466 SHSGLVK--EGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPND 523
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFG----MMPKKNVASWVSLIDGFMRKGDLKKAGE 251
++W + C+ EL G + N +S+V L + + G K
Sbjct: 524 ----VIWRTFLTACNHHKEFETG-ELVGKHLILQAGYNPSSYVLLSNMYASFGKWKDVRR 578
Query: 252 LFEQMPEKGV 261
+ M E+ +
Sbjct: 579 IRTMMKERKI 588
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 223/467 (47%), Gaps = 40/467 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLIS-SASLH 76
+ SS S + ++L+H+ +T LRQ+HA ++ L ++ ++ A
Sbjct: 19 LPSSPSISAFLASHPALTLLHTQCATMAHLRQLHAALVKSGLSKDPIAASRAVAFCAGEG 78
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ YA I + N ++N IR L++ + ++ FV MLR P R T+P +
Sbjct: 79 RDAAYAARIVRYHPRPNSFMWNTAIRALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLF 138
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A L G LH +++K G+ DA+ R MY G+ DE
Sbjct: 139 AAYARLGRADDGAALHGMVLKLGLAGDAYTRNTTIAMYASSGRA-------DE------- 184
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
A+ LFG +V + S I R G + +A +F+ M
Sbjct: 185 ---------------------ALALFGQCQVFDVVACNSAIVALSRAGRVDEARAVFDGM 223
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + V +W+AM++ +S+ A+ +F M GV N +VS L CA +GALE G
Sbjct: 224 PSRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGA 283
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWTAMIWGLA 373
VH YI D G+ + ALVDMY KCG+I A VF ++ + L +W AM+ GLA
Sbjct: 284 WVHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFDTSRSQGLAKLSSWNAMMLGLA 343
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
HG+ ++A+ F ++ G PD F+A+L A +SG A F SM +Y + P +
Sbjct: 344 AHGQCQEALALFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASMAREYGVTPGI 403
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+H+ +V+ L+R G++ +A + I MP PD IWGAL CR H D
Sbjct: 404 EHYGCLVDALARAGRLREAEDTIRAMPMKPDAAIWGALLSGCRLHGD 450
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 238/481 (49%), Gaps = 49/481 (10%)
Query: 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
LHN +S++ +S +L + A I D + + +N +IRG E + + I
Sbjct: 7 LHNPTLASKLVVSF-ASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAIL 65
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
+ + + ++ + T FV K+ ++ G +H I K G E++ ++ L ++Y
Sbjct: 66 VYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYG 125
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------------NG- 208
+ G ++FDE P+++ +++WN LI NG
Sbjct: 126 LFDEDCGLQQIFDEMPQRD----LVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGV 181
Query: 209 --------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQM 256
CS + LR+ + G + K + V +LI + + G ++ A ++F+ M
Sbjct: 182 TAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLM 241
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + VVSWT++ING+S N +AL F QM +R ++ TV+ + C+K+ + E G
Sbjct: 242 PMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGE 301
Query: 317 RVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+ Y+ GL AI AL+DM+AKCGNI A +F +EK +++WT MI GLA
Sbjct: 302 WISQYVV--KIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLA 359
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG A+ F +M G +PD VFL++L+AC ++G V F SM DY I P +
Sbjct: 360 MHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWM 419
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493
+H+ +V++L R G VD+A F+ MP PD ++W L AC T + +A + C
Sbjct: 420 EHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCE 479
Query: 494 L 494
L
Sbjct: 480 L 480
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 20/315 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
++S+ KP N +T I+S+ S + ++ + +H + + + + LI S S
Sbjct: 172 VRSNVKP-NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGS 230
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A+ +F +N+ + LI G ++N+ + F M ++RP+ +T V
Sbjct: 231 IRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCM 290
Query: 139 VASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ L LG + +VK G+ E A L DM+ + G A ++FD EK
Sbjct: 291 CSKLRSFELGEWISQYVVKIGLLKESPAIANA-LMDMHAKCGNINRACQIFDGMEEK--- 346
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGEL 252
+++ W ++I G + G+ A+ F M ++ ++SL+ G + +
Sbjct: 347 -TIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRC 405
Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
F M +S + M++ + G ++A M ++ + + L AC
Sbjct: 406 FSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNM---PIKPDMIVWRTLLGACH 462
Query: 308 KVGALEAGVRVHNYI 322
G + +V NY+
Sbjct: 463 TQGNISLANQVMNYL 477
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 248/491 (50%), Gaps = 59/491 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLI 101
R A LH L ++ +++L K +D A +FD + ++N L+
Sbjct: 128 RDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLL 187
Query: 102 RGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
GL + ++ FV M+ + VRP+ T ++ A S +++GR +H VK G+
Sbjct: 188 AGLPGSVALEA----FVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGL 243
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
V L +Y + G A +FD + + ++ +N LI+G S G + +VE
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPD----LVAYNALISGYSVNGMVESSVE 299
Query: 221 LFGMMP----KKNVASWVSLI--------------------------DG---------FM 241
LF + + N ++ V++I D +
Sbjct: 300 LFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYC 359
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R D++ A +F+ MPEK + SW AMI+G++QNG E A+ +F M + V+ N T+ S
Sbjct: 360 RLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISS 419
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
LSACA++GAL G VH I+ + L + TAL+DMYAKCG+I A +F K+
Sbjct: 420 TLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKN 479
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+++W AMI G +HGR +A++ +K M+ + P + FL++L AC + G V F
Sbjct: 480 VVSWNAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFR 539
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCACRTH 478
M +Y I P ++H T +V+LL R G++++AL+ I++ P++ P +WGAL AC H
Sbjct: 540 VMTNEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPG--VWGALLSACMVH 597
Query: 479 KDTKIAKIALQ 489
K++ +AK+A Q
Sbjct: 598 KNSDLAKLASQ 608
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 171/397 (43%), Gaps = 48/397 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H + L + T L+S S +D A S+FD +L +N LI G + N
Sbjct: 232 RCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVN 291
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+S + F + RPN T V + L R LH +VK+ ++ DA V
Sbjct: 292 GMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS 351
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L +Y +L A +FD PEK WN +I+G ++ G AVELF +M +
Sbjct: 352 TALTTLYCRLNDMESARSIFDAMPEKTMES----WNAMISGYAQNGLTEMAVELFQLMQE 407
Query: 228 KNV----------------------ASWV-----------------SLIDGFMRKGDLKK 248
NV +WV +LID + + G + +
Sbjct: 408 LNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAE 467
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F++M K VVSW AMI+G+ +G +AL ++ MLDA + T +S L AC+
Sbjct: 468 ARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSH 527
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL--LT 364
G ++ G +V ++ N++ + I T +VD+ + G + A + E + +
Sbjct: 528 GGLVDEGQKVFRVMT-NEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGV 586
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
W A++ +H + A +K+ +E G L
Sbjct: 587 WGALLSACMVHKNSDLAKLASQKLFELDSENAGYYVL 623
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 120/487 (24%), Positives = 213/487 (43%), Gaps = 60/487 (12%)
Query: 35 ISLIHSSNSTKQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+ LI S++ + L Q+ A + H + +T L+ ASL + L +F F
Sbjct: 24 LRLIALSSTLRHLDQLLAVSLASGHYALDPAPVTALLLRYASLRAPPRHLLRLFRAFPRP 83
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL-----SL 147
+ + N L+R L S H +F P+ ++ F + S++S +
Sbjct: 84 DRFLRNALLRSL------PSLRPHLLF-----PSPDSFSFAFAATSLSSSCSSRGRDAAA 132
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
R LH L V +G D FV LA +Y +L K A KVFD P S +LWN L+
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVP----SPDTILWNTLLA 188
Query: 208 GCS------------KIGY-----------LRKAVE---------LFGMMPKKNVASWVS 235
G ++G LR A E + G K +A
Sbjct: 189 GLPGSVALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEH 248
Query: 236 LIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
++ G M + GD+ A LF++M + +V++ A+I+G+S NG E ++ +F ++ +
Sbjct: 249 VVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASD 308
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
R N T+V+ + + G +H ++ + TAL +Y + ++E+A
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESAR 368
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+F EK + +W AMI G A +G E A++ F+ M +P+ T + L+AC G
Sbjct: 369 SIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLG 428
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ L + + +E +V T ++++ ++ G + +A + ++M + + V W A+
Sbjct: 429 ALSLG-TWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRM-DNKNVVSWNAM 486
Query: 472 FCACRTH 478
H
Sbjct: 487 ISGYGLH 493
>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 558
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 151/496 (30%), Positives = 249/496 (50%), Gaps = 55/496 (11%)
Query: 37 LIHSSNSTKQLRQIHA-------QIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
++++ + L+QIHA Q H+ F +R+ +++ ++ ++ YA +FD
Sbjct: 16 FLNNAKNISHLKQIHALFLKHLPQNAPHHFF--NRLLFRVLHFSAEKSNLYYAHKLFDTM 73
Query: 90 -TPKNLHIFNVLIRG-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
N I+ LIR L+ ++HF CIS F M + + P+ T+ V + +
Sbjct: 74 PNCSNCFIWTSLIRAFLSHHTHFCHCISTFARMHQKGILPSGFTFSLVLNACGRVPAGFE 133
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G+ +H +V+SG + V+ L DMY + G A VFD +++ V+ W +I
Sbjct: 134 GKQVHARLVQSGFLGNKIVQTALLDMYAKCGHVCDARDVFDGIVDRD----VVAWTAMIC 189
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G +K G + A LF M ++N +W +++ G+ GD+K A EL++ M K V+W AM
Sbjct: 190 GYAKAGRMVDARFLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKDEVTWVAM 249
Query: 268 INGF--------------------------------SQNGEAEKALAMFFQMLDAGVRAN 295
I G+ +QNG A +A+ M+ +M A ++
Sbjct: 250 IAGYGKLGNVSEARRIFDEITVPWNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVT 309
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGAI-GTALVDMYAKCGNIEAAS 351
D +V A+SACA++ +R+ N ++ N F K I AL+ M +KCGNI+ A
Sbjct: 310 DVAMVGAISACAQL----RDIRMSNSLTYNIEEGFCEKTHIVSNALIHMQSKCGNIDLAW 365
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
F + +DL T++AMI A HG+ + AI F KM G +P+ F+ +L AC SG
Sbjct: 366 REFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVLNACSTSG 425
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ FF M Y IEP +H+T +V+LL R GQ++KA + I + + D WG+L
Sbjct: 426 LIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSL 485
Query: 472 FCACRTHKDTKIAKIA 487
ACR + + ++ +IA
Sbjct: 486 LAACRVYGNVELGEIA 501
>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
Length = 788
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 250/475 (52%), Gaps = 16/475 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ L
Sbjct: 206 MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGL 265
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ ++YA IFD K++ +N+LI G + I H
Sbjct: 266 EMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAI-HMCK 324
Query: 120 MLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
++RL ++R + +T + + A L LG+ + C ++ E + + DMY + G
Sbjct: 325 LMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCG 384
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWV 234
A KVFD T EK+ ++LWN L+ + G +A+ LF M + N+ +W
Sbjct: 385 SIVDAKKVFDSTVEKD----LILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMITWN 440
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDA 290
S+I +R G + +A E+F QM G+ +SWT M+NG QNG +E+A+ +M ++
Sbjct: 441 SIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQES 500
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEA 349
G+R N F++ ALSACA + +L G +H YI N + T+LVDMYAKCG+I
Sbjct: 501 GLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSSVSFVTSLVDMYAKCGDINQ 560
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A FG +L + AMI A++G ++AI ++++ +PD F ++L+AC +
Sbjct: 561 AEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLLSACSH 620
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+G + A+N F M + ++P ++H+ ++V+LL+ G+ +KAL I +MP PD
Sbjct: 621 AGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDLLASSGETNKALELIKEMPYKPD 675
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 217/456 (47%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +I+ A ++F +N+ + +I
Sbjct: 50 QQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKC 109
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ ++ FV M+ V P+ P V K+ +L GRG+H +VK+G+ F
Sbjct: 110 RIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVF 169
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFD+ PE+N V+ WN L+ G + G +A+ L M
Sbjct: 170 VASSLADMYGKCGVLNDARKVFDKIPERN----VVAWNALMVGYVQNGMNEEAIRLLSDM 225
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ + + +++++G + + G +
Sbjct: 226 RKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLV 285
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G + A+ M M +R + T+ + +SA
Sbjct: 286 EYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAA 345
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + + VDMYAKCG+I A VF T EKDL+ W
Sbjct: 346 ARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWN 405
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F M P+ + +I+ + +GQV A F M+
Sbjct: 406 TLLAAYADSGLSGEALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQ-S 464
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+NF+ KM E+
Sbjct: 465 SGIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQES 500
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 137/291 (47%), Gaps = 12/291 (4%)
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
GYL KA G+ VAS SL D + + G L A ++F+++PE+ VV+W A++ G+
Sbjct: 157 GYLVKA----GLHDCVFVAS--SLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYV 210
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
QNG E+A+ + M G+ TV + LSA A + +E G + H N +
Sbjct: 211 QNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNI 270
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+GT++++ Y K G +E A ++F EKD++TW +I G G + AI K M
Sbjct: 271 LGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLEN 330
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
D +++A + +KL + E + + V++ ++ G + A
Sbjct: 331 LRYDSVTLSTLMSAAARTHNLKLGKE-VQCYCIRHCFESEIVLASTAVDMYAKCGSIVDA 389
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL-SIPQAM 502
+ E D ++W L A + D+ ++ AL+ + L S+P M
Sbjct: 390 KKVFDSTVE-KDLILWNTLLAA---YADSGLSGEALRLFYDMQLESVPPNM 436
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 232/481 (48%), Gaps = 45/481 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + + LI+ + A +FD ++ +N +I G EN
Sbjct: 155 REVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEN 214
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M LS+ P+ +T V + L LG LH +V++ + + V
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVY 274
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC------SKIGYLRKAVEL 221
L MY+ +G + A VF + V+ W +I+GC K K +E+
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGM----ECRDVVSWTTIISGCVDNLLPDKALETYKTMEI 330
Query: 222 FGMMPKKNVASWV---------------------------------SLIDGFMRKGDLKK 248
G MP + + V SLID + + ++K
Sbjct: 331 TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEK 390
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F Q+P+K V+SWT++ING N +AL +FF+ + + N T++SALSACA+
Sbjct: 391 ALEIFHQIPDKDVISWTSVINGLRINNRCFEAL-IFFRKMILKSKPNSVTLISALSACAR 449
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
VGAL G +H + G G + A++D+Y +CG + A F EKD+ W +
Sbjct: 450 VGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNIL 508
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G A G+ ++ FK+M+ S PD F+++L AC SG V L +F M+ +Y
Sbjct: 509 LTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYH 568
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ VV+LL R G++++A FI +MP PD IWGAL ACR H+ + ++A
Sbjct: 569 ITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAA 628
Query: 489 Q 489
Q
Sbjct: 629 Q 629
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 203/440 (46%), Gaps = 55/440 (12%)
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
S R+ L+S + A ++F ++L +NVL+ G + F + + +L
Sbjct: 68 SVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRIL 127
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
+RP+ T+P V +S A L GR +H +V+ + D V L MYV+ G
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV 187
Query: 182 GAFKVFDETPEKNKSESVLLWNVLING--------------------------------- 208
A +FD+ P +++ + WN +I+G
Sbjct: 188 SARMLFDKMPTRDR----ISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVI 243
Query: 209 --CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
C +G R +L + + N++ + SLI ++ G K+A +F M + VV
Sbjct: 244 SACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVV 303
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
SWT +I+G N +KAL + M G ++ T+ S LSACA +G L+ G+++H
Sbjct: 304 SWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELA 363
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
L + +L+DMY+KC IE A +F + +KD+++WT++I GL I+ R +A+
Sbjct: 364 ERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEAL 423
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL-----ALNFFDSMRFDYFIEPSVKHHT 437
+F+KM+ ++P+ ++ L+AC G + A M FD F+
Sbjct: 424 IFFRKMILK-SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLP------N 476
Query: 438 VVVNLLSRVGQVDKALNFIN 457
+++L R G++ ALN N
Sbjct: 477 AILDLYVRCGRMRTALNQFN 496
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 137/269 (50%), Gaps = 5/269 (1%)
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G S+ Y+ KAV L ++ +V +L+ F+R GD+ A +F +M E+ + SW +
Sbjct: 48 GYSEGEYVWKAV-LSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVL 106
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
+ G+++ G ++AL ++ ++L AG+R + +T S L +CA L G VH ++ DF
Sbjct: 107 VGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDF 166
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ + AL+ MY KCG++ +A ++F + +D ++W AMI G + + ++ F +
Sbjct: 167 DMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFR 226
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRV 446
M +PD ++++AC G +L +R Y + ++ + ++ + V
Sbjct: 227 MRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAY--DGNISVYNSLIQMYLSV 284
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCAC 475
G +A + + M E D V W + C
Sbjct: 285 GHWKEAESVFSGM-ECRDVVSWTTIISGC 312
>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/406 (33%), Positives = 210/406 (51%), Gaps = 17/406 (4%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+++ + +I G +++S + F M+ V PN +T + + ASL L G +H
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C +K G+ + V L DMY + GK A VFD EK+ V WN +I G +
Sbjct: 375 CFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKD----VYTWNSMIGGYCQA 430
Query: 213 GYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV---- 262
GY KA ELF +MP NV +W ++I G ++ GD +A +LF+ M + G V
Sbjct: 431 GYGGKAYELFMRLRESTVMP--NVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNT 488
Query: 263 -SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
SW ++I G+ Q GE KALA+F QM N T++S L ACA V A + +H
Sbjct: 489 ASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGC 548
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ + + A+ +LVD YAK GNI+ + VF KD++TW ++I G +HG + A
Sbjct: 549 VLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSA 608
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
Q F +M G P+ +I+ A +G V + F S+ ++ I P++ H+ +V+
Sbjct: 609 FQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVD 668
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G++ A+ FI MP PD IW +L ACR H + +A +A
Sbjct: 669 LYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLA 714
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 230/474 (48%), Gaps = 21/474 (4%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSS---NSTKQLRQIHAQI-ILHNLFASSRITTQLISS 72
T I S K + ++ I+L+ + S + R++H ++ ++H + + + T+L+S
Sbjct: 66 TAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRV--NPFVETKLVSM 123
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ + A +FD +NL+ ++ +I + ++ + F M+ V P+ +
Sbjct: 124 YAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLF 183
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
P + ++ + L + +H L+++ G+ + + +V+ GK A K F E
Sbjct: 184 PKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDE 243
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK 248
++ + WNV+I G + G +A L M K + ++ +I + + GD
Sbjct: 244 RDG----VSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDL 299
Query: 249 AGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L ++M G V +WT+MI+GFSQ+ +AL F +M+ AGV N T+ SA S
Sbjct: 300 VIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATS 359
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA + +L+ G+ +H + + +G +L+DMY+KCG +EAA VF EKD+ T
Sbjct: 360 ACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYT 419
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +MI G G +A + F ++ S P+ + A+++ C +G A++ F M
Sbjct: 420 WNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIME 479
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDFVIWGALFCAC 475
D ++ + ++ ++G+ +KAL +M +P+ V ++ AC
Sbjct: 480 KDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPAC 533
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 170/395 (43%), Gaps = 21/395 (5%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT S S S + +IH I + + + LI S ++ A +F
Sbjct: 350 NTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVF 409
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLL 145
D K+++ +N +I G + + F+ + +V PN +T+ +S + +
Sbjct: 410 DTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDED 469
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+ GV+ + L Y QLG+ A +F + N S + + +
Sbjct: 470 QAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSI 529
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ C+ + +K E+ G + ++N+ S + SL+D + + G++K + +F M K +
Sbjct: 530 LPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDI 589
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV--- 318
++W ++I G+ +G ++ A +F QM + G+R N T+ S + A G ++ G V
Sbjct: 590 ITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSS 649
Query: 319 ----HNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLA 373
H + D L A+VD+Y + G + +A + E D+ WT+++
Sbjct: 650 ITEEHQILPTLDHYL------AMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACR 703
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
HG A+ K++ EPD V +L +
Sbjct: 704 FHGNLNLAVLAAKRL--HELEPDNHVIYRLLVQAY 736
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 6/286 (2%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---FGMMPKKNVASWV 234
G R A D ++ S + L+ C +G + EL G++ + N
Sbjct: 59 GLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVET 118
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
L+ + + G LK A ++F+ M E+ + +W+AMI +S+ ++ + +FF M+ GV
Sbjct: 119 KLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLP 178
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ F L AC LE +H+ + + +++ + KCG + A F
Sbjct: 179 DAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFF 238
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQV 413
G E+D ++W MI G G ++A + M G +P G V I+ A + G
Sbjct: 239 GNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKP-GLVTYNIMIASYSQLGDC 297
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
L ++ M + P V T +++ S+ ++ +AL+F KM
Sbjct: 298 DLVIDLKKKME-SVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM 342
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS----CNDFGL 329
NG +A+ + G + + T ++ L C VG++E G +H + N F
Sbjct: 58 NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPF-- 115
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ T LV MYAKCG ++ A VF +E++L TW+AMI + R+++ ++ F MM
Sbjct: 116 ---VETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMM 172
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G PD +F IL AC ++ + S+ + ++ ++ + G++
Sbjct: 173 GDGVLPDAFLFPKILQACGNCEDLE-TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKL 231
Query: 450 DKALNFINKMPETPDFVIWGALFCA 474
A F M E D V W +
Sbjct: 232 SLARKFFGNMDER-DGVSWNVMIAG 255
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 125/320 (39%), Gaps = 30/320 (9%)
Query: 69 LISSASLHKSIDYALSIF-----DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
+IS + D A+ +F D +N +N LI G + ++ F M L
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+ PN +T + + A++ + +H +++ +E + V L D Y + G + +
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYS 577
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG 239
VF+ K+ ++ WN +I G G A +LF M + N + S+I
Sbjct: 578 RTVFNGMSSKD----IITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHA 633
Query: 240 FMRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+ G + K +F + E+ + + AM++ + ++G A+ + D +
Sbjct: 634 YGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEF---IEDMPIEP 690
Query: 295 NDFTVVSALSACAKVGALEAGV----RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+ S L+AC G L V R+H N I LV YA G E
Sbjct: 691 DVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNH-----VIYRLLVQAYALYGKFEQT 745
Query: 351 SLVFGETKEKDLLTWTAMIW 370
V KE + TA W
Sbjct: 746 LKVRKLGKESAMKKCTAQCW 765
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/547 (28%), Positives = 253/547 (46%), Gaps = 58/547 (10%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
KS+ N+ T IS + R IH Q ++ + + + ++ +
Sbjct: 111 KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRV 170
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
+ A +FD K+ ++N +I G +N + I F ++ S R + T + +
Sbjct: 171 EDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
VA L L LG +H L K+G +V +Y + GK + +F E +
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREF----RKPD 286
Query: 199 VLLWNVLINGCSKIGYLRKAVELF--------------------------------GMMP 226
++ +N +I+G + G ++ LF G
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346
Query: 227 KKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K N S S L + + +++ A +LF++ PEK + SW AMI+G++QNG E A++
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M + N T+ LSACA++GAL G VH+ + DF + TAL+ MYA
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I A +F +K+ +TW MI G +HG+ ++A+ F +M+ SG P FL
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC ++G VK F+SM Y EPSVKH+ +V++L R G + +AL FI M
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586
Query: 463 PDFVIWGALFCACRTHKDTKIAK-----------------IALQSSCSLNLSIPQAMSYC 505
P +W L ACR HKDT +A+ + L + S + + PQA +
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVR 646
Query: 506 QTFMQQK 512
QT ++K
Sbjct: 647 QTAKKRK 653
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 130/491 (26%), Positives = 221/491 (45%), Gaps = 50/491 (10%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I++ + S S L Q HAQIILH + T+L S +I YA IF
Sbjct: 18 ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSL 147
++ +FNVL+RG + N S +S F + + ++PN TY F + +
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H V G + + + ++ MY + + A KVFD PEK+ +LWN +I+
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD----TILWNTMIS 193
Query: 208 G---------------------CSKIGY---------------LRKAVELFGMMPKKNVA 231
G C+++ LR +++ + K
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 232 SWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
S ++ GF+ + G +K LF + + +V++ AMI+G++ NGE E +L++F ++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ +G R T+VS + + + A +H Y ++F ++ TAL +Y+K I
Sbjct: 314 MLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEI 370
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E+A +F E+ EK L +W AMI G +G E AI F++M S P+ IL+AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G + L D +R F E S+ T ++ + ++ G + +A + M + + V
Sbjct: 431 AQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE-VT 488
Query: 468 WGALFCACRTH 478
W + H
Sbjct: 489 WNTMISGYGLH 499
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 150/505 (29%), Positives = 241/505 (47%), Gaps = 53/505 (10%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA--SLHKSIDYALSIF 86
I + I+SL+ S ++L+++H I+ S ++LI S I+YA +
Sbjct: 2 IHQNTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVL 61
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+++I+N +IRG + + + + + M+ P+ T+PFV K+ ++
Sbjct: 62 RQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQD 121
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H IVKSG E DA+ L MYV + KVFD P+ N V+ W LI
Sbjct: 122 CGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWN----VVAWTCLI 177
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV---------- 234
G K +A+++F M NV WV
Sbjct: 178 AGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYD 237
Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
++++ + + G LK A +LF +MP++ +VSW +MIN ++Q ++A
Sbjct: 238 PFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEA 297
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L +FF M +GV + T +S LS CA AL G VH Y+ ++ TAL+DM
Sbjct: 298 LDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDM 357
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTV 399
YAK G + A +F ++KD++ WT+MI GLA+HG +A+ F+ M S PD
Sbjct: 358 YAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHIT 417
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++ +L AC + G V+ A F M Y + P +H+ +V+LLSR G +A + M
Sbjct: 418 YIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETM 477
Query: 460 PETPDFVIWGALFCACRTHKDTKIA 484
P+ IWGAL C+ H++ +A
Sbjct: 478 TVQPNIAIWGALLNGCQIHENVCVA 502
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 187/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A FDE PEKN+ + +N +I G + + A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF 320
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +N++SW ++I G+ + GD+ +A + F+ MP++ VSW A+I G++Q+G E+AL
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
MF ++ G N T ALS CA + ALE G ++H +G +G AL+ MY
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I+ A+ F +EKD+++W M+ G A HG QA+ F+ M +G +PD +
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G + +F SM DY + P+ KH+T +++LL R G++++A + I MP
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
P WGAL A R H +T++ + A +
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAE 587
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 157/368 (42%), Gaps = 49/368 (13%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
IS+ + D AL +F+ ++ +N +I G NS F + F M P R
Sbjct: 56 ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------PER 109
Query: 130 LTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ + ++ V + L R + K V +++ L Y Q G A +V
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNS-----LLSGYAQNGYVDEAREV 164
Query: 187 FDETPEKNK----------------SESVLL-----------WNVLINGCSKIGYLRKAV 219
FD PEKN E+ LL WN L+ G + L A
Sbjct: 165 FDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDAR 224
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
LF MP ++ SW ++I G+ + G L +A LF++ P + V +WTAM++G+ QNG ++
Sbjct: 225 WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
A F +M + N+ + + ++ + ++ + + C + + ++
Sbjct: 285 AKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI----SSWNTMIT 336
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
Y + G+I A F ++D ++W A+I G A G YE+A+ F ++ G +
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRAT 396
Query: 400 FLAILTAC 407
F L+ C
Sbjct: 397 FGCALSTC 404
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 22/320 (6%)
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
TR + V + + K +L WN I+ + G+ A+ +F MP+++ S+ ++I G
Sbjct: 30 TRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG 89
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
++R A LF+QMPE+ + SW M+ G+ +N A +F M + V +
Sbjct: 90 YLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV----VSW 145
Query: 300 VSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
S LS A+ G ++ V N N G L+ Y G IE A L+F
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG-----LLAAYVHNGRIEEACLLFESKS 200
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+ DL++W ++ G + A F KM D + +++ G + A
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARR 256
Query: 419 FFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
FD S D F T +V+ + G +D+A F ++MPE + V + A+
Sbjct: 257 LFDESPTRDVFT------WTAMVSGYVQNGMLDEAKTFFDEMPEKNE-VSYNAMIAGYVQ 309
Query: 478 HKDTKIAKIALQSSCSLNLS 497
K IA+ +S N+S
Sbjct: 310 TKKMDIARELFESMPCRNIS 329
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 104/494 (21%), Positives = 193/494 (39%), Gaps = 59/494 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+QIH Q + + L++ SID A F+ K++ +N ++ G A +
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFV 166
+ ++ F M V+P+ +T V + + LL G + K GV +
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWNVLINGCSKIGYLRKAVELFGM 224
+ D+ + G+ A + P + + S LL I+G +++G KA E+
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG--EKAAEMVFK 591
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN-------GFS 272
M +N +V L + + G A ++ +M + GV SW + N G
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDC 651
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGL-- 329
+ E E+ A + + LD +R + ++ L + E ++ H+ FG+
Sbjct: 652 SHPEKERIYA-YLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILT 710
Query: 330 -KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
G ++ C + +A + + I G I R +F +
Sbjct: 711 IPGGRPIRVMKNLRVCEDCHSA------------IKHISKIVGRLIILRDSHRFHHFNEG 758
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
S + FL ++ Y+G + +F M +Y + P+ KH+T +++LL RV +
Sbjct: 759 FCSCGDYWLQFFLLVVI---YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDR 815
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ--AMSYCQ 506
+++ GAL A R H +T++ + A Q + PQ +S +
Sbjct: 816 LEE-----------------GALLGASRIHGNTELGEKAAQMFFKMG---PQNSGISKMR 855
Query: 507 TFMQQKGDGRTWRE 520
QK G +W E
Sbjct: 856 DVGVQKVPGYSWFE 869
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 164/513 (31%), Positives = 254/513 (49%), Gaps = 59/513 (11%)
Query: 30 TETHIISLIHSSNST--KQLRQIHAQIILHNLFASSRITTQLISSASLHKS--------- 78
TE +++ SS + K L +IHA I+ ++L + + T+ ISS++
Sbjct: 8 TERKCFNILQSSKTKTFKTLLEIHAFILRNSLHNNLHLLTKFISSSTSLALSTPRRNDAV 67
Query: 79 --IDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQ-SCISH-FVFMLRLS----VRPN 128
+ +A F+H P F N +I N+HF +H F + S RP+
Sbjct: 68 SIVQHARLFFNHTPPHKCDEFLCNTII-----NAHFSLRQFNHGFTLYNQFSKDCFFRPS 122
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
T+ + K + G +H +++K+ D +V L DMYV+ G A KVFD
Sbjct: 123 SYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFD 182
Query: 189 ETP---------------------EKNK------SESVLLWNVLINGCSKIGYLRKAVEL 221
E E K V +NV+I+G K+G + A +L
Sbjct: 183 EMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDL 242
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F M KNV SW S++ G+ GD+ +A LF+ MPEK V+SW AMI G+ QNG + AL
Sbjct: 243 FDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDAL 302
Query: 282 AMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+F +M + V N+ TVVS L A A + AL+ G VH ++ N + ALVDM
Sbjct: 303 KLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDM 362
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
YAKCG I A LVF E EKD +W A+I G ++G ++A++ F M+ G EP+
Sbjct: 363 YAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITM 422
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
++L+AC + G V+ F++M + I P ++H+ +++LL R G++D+A I MP
Sbjct: 423 TSVLSACNHCGLVEEGRRCFEAME-RFGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMP 481
Query: 461 ETPDFVIWGALFCACRTHKDT----KIAKIALQ 489
P+ +I + AC +D +I K+A++
Sbjct: 482 YDPNEIILTSFLFACCYFEDVSRAERILKVAVK 514
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+H + + L S + L+ + I A +F+ T K+ +N LI G N
Sbjct: 340 VHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGC 399
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + F MLR PN++T V + L+ GR + + G+
Sbjct: 400 AKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGC 459
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC--SKIGYLRKAVELFGMMPK 227
+ D+ + G+ A K+ P ++L + L C + + +++ M K
Sbjct: 460 MIDLLGRAGRLDEAEKLIQAMP--YDPNEIILTSFLFACCYFEDVSRAERILKVAVKMEK 517
Query: 228 KNVASWVSLIDGFM---RKGDLKKAGELFEQMPEKGVVSWTAM 267
+ +V L + + R D++ E+ ++ V+W+ +
Sbjct: 518 EGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNKEVAWSVI 560
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 231/455 (50%), Gaps = 47/455 (10%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
++ A +FD +N+ + ++I + + + F+ M+ P+R T V
Sbjct: 94 DLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVS 153
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKN 194
+ A + LLSLGR HCL++KSG++ D V L DMY + G A KVFD P N
Sbjct: 154 ACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHN 213
Query: 195 KSESVLLWNVLINGCSKIGYL-RKAVELFGMMPKKNVAS------------------WV- 234
V+ W +I G + G R+A+ELF M + V W+
Sbjct: 214 ----VMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLG 269
Query: 235 --------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
SLI + R G+++ A + F+ + EK +VS+ ++N ++++
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKS 329
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
+E+A +F ++ AG N FT S LS + +GA+ G ++H+ I + F I
Sbjct: 330 LNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHIC 389
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
AL+ MY++CGNIEAA VF E + ++++WT+MI G A HG +A++ F KM+ +G
Sbjct: 390 NALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVS 449
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ ++A+L+AC + G + L F SM+ ++ I P ++H+ VV+LL R G +++A+
Sbjct: 450 PNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAME 509
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+N MP D ++ ACR H + + K A +
Sbjct: 510 LVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAE 544
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 193/415 (46%), Gaps = 50/415 (12%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
++L ++ LI A N IS F ML PN + V ++ ++ +SLG+ +
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64
Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
++K+G E D V L DM+V+ G A+KVFD P++N V+ W ++I
Sbjct: 65 FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRN----VVTWTLMITRF 120
Query: 210 SKIGYLRKAVELF------GMMPKK---------------------------------NV 230
++G+ R AV+LF G +P + +V
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180
Query: 231 ASWVSLIDGFMR---KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQ 286
SL+D + + G + A ++F++MP V+SWTA+I G+ Q+G ++ A+ +F +
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLE 240
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+ V+ N FT S L ACA + + G +V+ + +G +L+ MY++CGN
Sbjct: 241 MVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGN 300
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+E A F EK+L+++ ++ A E+A + F ++ +GT + F ++L+
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
G + + F + ++ ++++ SR G ++ A N+M +
Sbjct: 361 ASSIGAIGKGEQIHSRILKSGF-KSNLHICNALISMYSRCGNIEAAFQVFNEMGD 414
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 6/208 (2%)
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
++ +VSW+A+I+ ++ N +A +A++ FF ML+ G N++ AC+ + G
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63
Query: 318 VHNYI-SCNDFGLKGAIGTALVDMYAKC-GNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ ++ F +G AL+DM+ K G++E+A VF +++++TWT MI
Sbjct: 64 IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G A+ F M+ SG PD +++AC G + L F + ++ V
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCV 182
Query: 436 HTVVVNLLSRV---GQVDKALNFINKMP 460
+V++ ++ G VD A ++MP
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMP 210
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 147/332 (44%), Gaps = 17/332 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
Q++A ++ L + + + LIS S +++ A FD KNL +N ++ A++
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKS 329
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F + N T+ + +S+ + G +H I+KSG + + +
Sbjct: 330 LNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHIC 389
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY + G AF+VF+E + N V+ W +I G +K G+ +A+E F M +
Sbjct: 390 NALISMYSRCGNIEAAFQVFNEMGDGN----VISWTSMITGFAKHGFATRALETFHKMLE 445
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS----WTAMINGFSQNGEAE 278
V+ ++++++ G + + + F+ M E G+V + +++ ++G E
Sbjct: 446 AGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLE 505
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ + M +A+ + + L AC G ++ G I D A L
Sbjct: 506 EAMELVNSM---PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAY-ILLS 561
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
+++A G E + + + KE++L W
Sbjct: 562 NLHASAGQWEEVAEIRKKMKERNLTKEAGCSW 593
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/492 (29%), Positives = 257/492 (52%), Gaps = 13/492 (2%)
Query: 3 GHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA 61
G+V N L AI ++ +T + +S + + + +Q HA ++ +
Sbjct: 174 GYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEM 233
Query: 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
++ + + LI+ S I+ A S+F K++ +N+LI G + ++ M
Sbjct: 234 TTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMR 293
Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
++R + +T + + A + L LG+ HC +++ +E D V + DMY + K
Sbjct: 294 LENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIG 353
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLI 237
A +VF+ + K+ ++LWN ++ +++G+ +A+ LF M NV SW SLI
Sbjct: 354 CARRVFNSSITKD----LILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLI 409
Query: 238 DGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
GF+ G + +A ++F QM GV V+WT +I+G +++G +A+ F +M +AGV+
Sbjct: 410 LGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVK 469
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N +++ L AC + +L+ G +H Y+ + L I T+LVDMYAKCG+ + A V
Sbjct: 470 PNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRV 529
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F +K+L + AMI G A+HG+ +A+ ++ + G +PD F L AC ++ V
Sbjct: 530 FDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMV 589
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F M ++ I PS++H+ +V+LLSR G +D+A I+ MP PD I G+L
Sbjct: 590 SEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLA 649
Query: 474 ACRTHKDTKIAK 485
ACR H ++ +
Sbjct: 650 ACREHNKIELEE 661
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%)
Query: 48 RQIHAQIILHN-LFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
RQIHAQI+ +FA + I T+L+ + + + + S+F KN+ + +I
Sbjct: 30 RQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNC 89
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV----- 160
+Q + F M + P+ P V K+ L + +G+ +H L+ V
Sbjct: 90 RKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVHGLVSCGYVWKMWG 149
Query: 161 ------------EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +A + YVQ G A +VF E E+ + + + ++
Sbjct: 150 GGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSA 209
Query: 209 CSKIGYLRKAVE------LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
+ +G L+ + + G+ N+ S SLI+ + + G ++ A +F +M EK VV
Sbjct: 210 SANLGALQDGKQGHAIAVICGIEMTTNLGS--SLINFYSKVGLIEDAESVFSRMLEKDVV 267
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+W +I+G+ Q GE +KAL M M +R + T+ + +SA A + L+ G H Y
Sbjct: 268 TWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYC 327
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
N+ + +++VDMYAKC I A VF + KDL+ W M+ A G +A+
Sbjct: 328 IRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEAL 387
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F +M P+ + +++ SGQV A + F M+ ++P++ T +++
Sbjct: 388 NLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQ-SLGVQPNLVTWTTLISG 446
Query: 443 LSRVGQVDKALNFINKMPET---PDFVIWGALFCACRTHKDTKIAKIALQSSC---SLNL 496
L+R G +A+ +M E P+ V + AC +I + AL SL L
Sbjct: 447 LARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGR-ALHGYLIRHSLYL 505
Query: 497 SIPQAMSYCQTF 508
SIP A S +
Sbjct: 506 SIPIATSLVDMY 517
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 41/294 (13%)
Query: 145 LSLGRGLHCLIVKSGVEY--DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L GR +H IVK G + + ++ L Y + + +F KN V W
Sbjct: 26 LHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLKN----VFSW 81
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL---------- 252
+I + G+ ++A+ F M + + L D F+ LK G L
Sbjct: 82 AAVIGLNCRKGFYQEALLGFKEMQENGL-----LPDNFVLPNVLKACGGLEWIRIGKVVH 136
Query: 253 --------------------FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
MP++ V+W +MI G+ QNG E+A+ +F++M + GV
Sbjct: 137 GLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGV 196
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
T+ S LSA A +GAL+ G + H + +G++L++ Y+K G IE A
Sbjct: 197 EPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAES 256
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
VF EKD++TW +I G G ++A+ M D +++A
Sbjct: 257 VFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSA 310
>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
Length = 818
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 12/406 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+ +N ++ G + + + + ML+ +RP+ T + KSVA+ LL G +H
Sbjct: 238 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 297
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C +++ +E D + L DMY + G+ A KVFD +N + WN L+ G +
Sbjct: 298 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRN----LTTWNSLVAGYANA 353
Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
G A+EL +M K ++ +W LI G+ G +A L Q+ GV VSW
Sbjct: 354 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 413
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G NGE E + +M GV+ + T+ L ACA + + G +H +
Sbjct: 414 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 473
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + TAL+DMY+K G++ +A ++F ++K+L+ AM+ GLA+HG+ +AI+
Sbjct: 474 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 533
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M SG +PD F A+LTAC G V +FD M Y ++P+ +++ +V+LL+
Sbjct: 534 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLA 593
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
R G +D+A++FI + P P WGAL C H + +A++A ++
Sbjct: 594 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 639
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 35/331 (10%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H +K ++ V LA MY + A +V D + SV+ WN ++
Sbjct: 157 GRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVA 212
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
C+++G + A+EL M + PE V +W +
Sbjct: 213 CCARLGLVDDALELAARMSRSG---------------------------PEPNVATWNTV 245
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
++G S++G +AL + ML G+R + TV S L + A G L G+ +H + N
Sbjct: 246 LSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQL 305
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
GTALVDMYAKCG ++ A VF + ++L TW +++ G A GR++ A++ +
Sbjct: 306 EPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVEL 365
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M + +PD T + ++T +GQ A+ ++ + P+V T +++ G
Sbjct: 366 MKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA-AGVTPNVVSWTSLISGSCHNG 424
Query: 448 QVDKALNFINKMPET---PDFVIWGALFCAC 475
+ + + F ++M + P V L AC
Sbjct: 425 EYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 455
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 156/360 (43%), Gaps = 21/360 (5%)
Query: 32 THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
T + SL+ S +T LR +IH + + L T L+ + +D A +FD
Sbjct: 275 TTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDA 334
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-----NRLTYPFVSKSVASLS 143
+NL +N L+ G A F + M + + P N L + +S +
Sbjct: 335 LEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQA 394
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+L L + I +GV + L G+ +F E + S++ +
Sbjct: 395 VLLLRQ-----IKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMS 449
Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
VL+ C+ + +K EL ++ ++ +LID + + G L A +FE + +K
Sbjct: 450 VLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQK 509
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+V AM+ G + +G+ +A+ +F M ++G++ + T + L+AC +G + G
Sbjct: 510 NLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYF 569
Query: 320 NYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+ + +G+K +VD+ A+CG + EA + + W A++ G +IHG
Sbjct: 570 DGME-TKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHG 628
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 56/274 (20%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+L+D R G L + E G V W + ++ E ++A+A+F +M G
Sbjct: 92 ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V V A AL+ + H + L MYA+ ++ AA+
Sbjct: 152 VPRRRGRAVHAY-------ALKLALDAHPLVP-----------GFLAGMYAENADVAAAT 193
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
V ++ W A++ A G + A++ +M SG EP+ + +L+ C G
Sbjct: 194 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 253
Query: 412 QVKLALNFFDSM-----RFD-------------------------YF----IEPSVKHHT 437
+ + AL SM R D +F +EP V T
Sbjct: 254 RDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGT 313
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+V++ ++ G++D A + + E + W +L
Sbjct: 314 ALVDMYAKCGRLDCAQKVFDAL-EHRNLTTWNSL 346
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K+ +++H + ++T LI S S+ A IF+ KNL + N ++ GL
Sbjct: 462 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 521
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
A + + I F M ++P+ +T+ + + S+ L++ G + K GV+
Sbjct: 522 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPT 581
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
+ D+ + G A + +P + W L+ GCS G L A
Sbjct: 582 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 638
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
LF + P N A+++ +++ + + +A L M +GV SW + G F
Sbjct: 639 NLFRLEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 697
Query: 272 SQNGEAEKALAMFFQML 288
+G+ A ++ L
Sbjct: 698 EVDGKPHPETAEIYEEL 714
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 238/452 (52%), Gaps = 5/452 (1%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ISL+ S T ++ Q+H ++ L ++L++S+ + DYA SIF+ N
Sbjct: 34 LISLLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLASSI--QDTDYAASIFNQIPSPN 91
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +FN ++RG + + H + F + + ++ ++ K+ A G+G+H
Sbjct: 92 LFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHG 151
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++V+SG V+ L Y G+ A ++FDE P K ++ WN L+ G ++
Sbjct: 152 VVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKI---DLVSWNTLLGGYLQVP 208
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ LFG M +K++ +LID + G + ++F Q+P+K VV W +I+G+++
Sbjct: 209 HPTMVTCLFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAK 268
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+ +++L++ M V+ N T+V LSACA GA G+ + NY+ L +
Sbjct: 269 SDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVL 328
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
GTALVDMY KCG +E A VF + KD+ +WTAMI G +HG+ + AI F +M G
Sbjct: 329 GTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGY 388
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ FLA+L AC + G V ++F + M +Y P V+H+ +++LL R G +++A
Sbjct: 389 RPNEVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAH 448
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
N I +P D W AL ACR + + + +
Sbjct: 449 NLIKSLPIEGDATGWRALLAACRVYGNVDLGE 480
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 183/287 (63%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ LI+ SK L A ++F + KN SW ++++GFMR G+++ A +LF++MP
Sbjct: 130 VMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPT 189
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ +SWTA+ING ++G +E+AL F QM +GV A+ ++++ L+ACA +GAL G+ V
Sbjct: 190 RDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWV 249
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H ++ +F I +L+DMY++CG IE A VF + ++ L++W ++I G A++G
Sbjct: 250 HRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFA 309
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++++++F M G +PDG + LTAC ++G V L FD+M+ + I P ++H+
Sbjct: 310 DESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGC 369
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+V+L R G+++ ALN I +MP P+ V+ G+L ACRTH D +A+
Sbjct: 370 IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 46/250 (18%)
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE--AGVRV 318
+V WT+ + + +NG+ +A A F +M AGV N T ++ LSACA + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 319 HNYISCNDFGLKGA---IGTALVDMYAKC------------------------------- 344
H Y +C +GL +GTAL+DMY+KC
Sbjct: 117 HGY-ACK-YGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G IE A +F E +D ++WTA+I GL HG EQA++ F +M SG D +A+L
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 405 TACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
AC G + L L F F + ++K ++++ SR G ++ A KM +
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEF----KDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 290
Query: 462 TPDFVIWGAL 471
V W ++
Sbjct: 291 R-TLVSWNSI 299
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 17/282 (6%)
Query: 51 HAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
HA+ + +NL + ++ +++ + I+ A+ +FD ++ + LI GL ++ +
Sbjct: 148 HARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGY 207
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + F M R V + ++ V + A L L+LG +H ++ + + +
Sbjct: 208 SEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNS 267
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK- 228
L DMY + G A +VF K +++ WN +I G + G+ +++E F M K+
Sbjct: 268 LIDMYSRCGCIEFARQVF----VKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEG 323
Query: 229 ---NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKA 280
+ S+ + G + K ELF+ M ++ + +++ + + G E A
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDA 383
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
L M +M ++ N+ + S L+AC G + R+ ++
Sbjct: 384 LNMIEEM---PMKPNEVVLGSLLAACRTHGDVNLAERLMKHL 422
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/483 (29%), Positives = 235/483 (48%), Gaps = 46/483 (9%)
Query: 48 RQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R AQ + + + I+ L+S + I A +FD +N+ + ++RG +
Sbjct: 62 RPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQ 121
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-VKSGVEYDAF 165
+ I + N +++ + + + R L +I VK D
Sbjct: 122 ----EGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVV 172
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
++ G+ A ++FDE P++N V+ W +I+G + + A +LF +M
Sbjct: 173 ASTNMIGGLCSEGRLSEAREIFDEMPQRN----VVAWTSMISGYAMNNKVDVARKLFEVM 228
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA----- 280
P KN +W +++ G+ R G + +A ELF+ MP K V + MI GF NGE KA
Sbjct: 229 PDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFD 288
Query: 281 --------------------------LAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
LA+F M GVR N +++S LS C + +L+
Sbjct: 289 QMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDH 348
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G +VH+ + + F L + + L+ MY KCG++ VF KD++ W ++I G A
Sbjct: 349 GRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ 408
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HG E+A++ F +M SG PD F+ +L+AC Y+G+VK L F+SM+ Y ++ +
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTE 468
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
H+ +V+LL R G++++A+N I MP D ++WGAL ACRTHK+ +A+IA + L
Sbjct: 469 HYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQL 528
Query: 495 NLS 497
S
Sbjct: 529 EPS 531
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 152/299 (50%), Gaps = 22/299 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+ +LG+ A +FD+ +S++V WN ++ G +A +LF MP++N SW
Sbjct: 26 FARLGQIDRARNIFDDL----QSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISW 81
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
L+ G+++ G + +A ++F++MPE+ VVSWT+M+ G+ Q G ++A +F++M + V
Sbjct: 82 NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ +TV+ L + G ++ R+ + I D T ++ G + A +
Sbjct: 142 S--WTVM--LGGLIEDGRVDEARRLFDMIPVKDV----VASTNMIGGLCSEGRLSEAREI 193
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E +++++ WT+MI G A++ + + A + F+ M + + + A+L SG++
Sbjct: 194 FDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM----PDKNEVTWTAMLKGYTRSGRI 249
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
A F +M ++P + +++ G+V KA ++M E D W AL
Sbjct: 250 NEAAELFKAMP----VKPVAACNGMIMG-FGLNGEVGKARWVFDQMKEKDDGT-WSALI 302
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 237/461 (51%), Gaps = 45/461 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFT 90
+ ++ N+ QL+Q+HA I+ + + L+S + YA SIF H T
Sbjct: 8 LTTVAQKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLT 67
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---- 146
+N + N +IRG + +S ++ ML+ V N T+P + K+ +L S
Sbjct: 68 NRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNI 127
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+GR +H +VK G+ D +V + Y + A +FDET
Sbjct: 128 VGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETS--------------- 172
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
K+V +++DG+ + G++K A E+F++MPE+ VSW+A
Sbjct: 173 --------------------YKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSA 212
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ +S+ + ++ LA+F +M + G N+ +V+ L+ACA +GAL G+ VH+Y
Sbjct: 213 MMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFH 272
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ TALVDMY+KCG +E+A VF +KD W AMI G A++G +++Q F+
Sbjct: 273 LESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFR 332
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M S T+P+ T F+A+LTAC ++ V+ L F+ M Y + P ++H+ V++LLSR
Sbjct: 333 QMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRA 392
Query: 447 GQVDKALNFI-NKMP--ETPDFVIWGALFCACRTHKDTKIA 484
G V++A F+ KM D +WGAL ACR HK+ +
Sbjct: 393 GMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVG 433
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 187/327 (57%), Gaps = 4/327 (1%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + YVQ G A FDE PEKN+ + +N +I G + + A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF 320
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +N++SW ++I G+ + GD+ +A + F+ MP++ VSW A+I G++Q+G E+AL
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
MF ++ G N T ALS CA + ALE G ++H +G +G AL+ MY
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I+ A+ F +EKD+++W M+ G A HG QA+ F+ M +G +PD +
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G + +F SM DY + P+ KH+T +++LL R G++++A + I MP
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
P WGAL A R H +T++ + A +
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAE 587
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 49/371 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ IS+ + D AL +F+ ++ +N +I G NS F + F M
Sbjct: 53 NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106
Query: 127 PNRLTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
P R + + ++ V + L R + K V +++ L Y Q G A
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNS-----LLSGYAQNGYVDEA 161
Query: 184 FKVFDETPEKNK----------------SESVLL-----------WNVLINGCSKIGYLR 216
+VFD PEKN E+ LL WN L+ G + L
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A LF MP ++ SW ++I G+ + G L +A LF++ P + V +WTAM++G+ QNG
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
++A F +M + N+ + + ++ + ++ + + C + +
Sbjct: 282 LDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI----SSWNT 333
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
++ Y + G+I A F ++D ++W A+I G A G YE+A+ F ++ G +
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393
Query: 397 GTVFLAILTAC 407
F L+ C
Sbjct: 394 RATFGCALSTC 404
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 22/320 (6%)
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
TR + V + + K +L WN I+ + G+ A+ +F MP+++ S+ ++I G
Sbjct: 30 TRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG 89
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
++R A LF+QMPE+ + SW M+ G+ +N A +F M + V +
Sbjct: 90 YLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV----VSW 145
Query: 300 VSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
S LS A+ G ++ V N N G L+ Y G IE A L+F
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG-----LLAAYVHNGRIEEACLLFESKS 200
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+ DL++W ++ G + A F KM D + +++ G + A
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARR 256
Query: 419 FFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
FD S D F T +V+ + G +D+A F ++MPE + V + A+
Sbjct: 257 LFDESPTRDVFT------WTAMVSGYVQNGMLDEAKTFFDEMPEKNE-VSYNAMIAGYVQ 309
Query: 478 HKDTKIAKIALQSSCSLNLS 497
K IA+ +S N+S
Sbjct: 310 TKKMDIARELFESMPCRNIS 329
>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 598
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 150/496 (30%), Positives = 249/496 (50%), Gaps = 55/496 (11%)
Query: 37 LIHSSNSTKQLRQIHA-------QIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
++++ + L+QIHA Q H+ F R+ +++ ++ ++ YA +FD
Sbjct: 16 FLNNAKNISHLKQIHALFLKHLPQNAPHHFF--DRLLFRVLHFSAEKSNLYYAHKLFDTM 73
Query: 90 -TPKNLHIFNVLIRG-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
N I+ LIR L+ ++HF+ CIS F M + + P+ T+ V + + +
Sbjct: 74 PNCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLNACGRVPAVFE 133
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G+ +H +V+SG + V+ L DMY + G A VFD +++ V+ W +I
Sbjct: 134 GKQVHARLVQSGFLGNKIVQTALLDMYAKCGYVCDARDVFDGMVDRD----VVAWTAMIC 189
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G +K G + A LF M ++N +W +++ G+ GD+K A EL++ M K V+W AM
Sbjct: 190 GYAKAGRMVDARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAM 249
Query: 268 INGF--------------------------------SQNGEAEKALAMFFQMLDAGVRAN 295
I G+ +QNG A +A+ M+ +M A ++
Sbjct: 250 IAGYGKLGNVSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVT 309
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGAI-GTALVDMYAKCGNIEAAS 351
D +V A+SACA++ +R+ N ++ + F K I AL+ M +KCGNI+ A
Sbjct: 310 DVAMVGAISACAQL----RDIRMSNLLTYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAW 365
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
F + +DL T++AMI A HG+ + AI F KM G P+ F+ +L AC SG
Sbjct: 366 REFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSG 425
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ FF M Y IEP +H+T +V+LL R GQ++KA + I + + D WG+L
Sbjct: 426 LIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSL 485
Query: 472 FCACRTHKDTKIAKIA 487
ACR + + ++ +IA
Sbjct: 486 LAACRVYGNVELGEIA 501
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 49/481 (10%)
Query: 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
LHN +S++ +S +L + A I D + + +N +IRG E + + I
Sbjct: 7 LHNPTLASKLVVSF-ASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAIL 65
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
+ + + ++ + T FV K+ ++ G +H I K G E++ ++ L MY
Sbjct: 66 IYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYG 125
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------------NG- 208
+ G ++FDE P+++ +++WN LI NG
Sbjct: 126 LFDEDCGLQQIFDEMPQRD----LVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGV 181
Query: 209 --------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQM 256
CS + LR+ + G + K + V +LID + + G ++ A ++F+ M
Sbjct: 182 TAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLM 241
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + VVSWT++ING+S N +AL F QM +R ++ TV+ + C+K+ + E G
Sbjct: 242 PMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGE 301
Query: 317 RVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+ Y+ GL AI L+DM+AKCGNI+ A +F +EK +++WT MI GLA
Sbjct: 302 WISQYVV--KTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLA 359
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
++G A+ F +M G +PD VFL++L+AC ++G V F SM DY I P +
Sbjct: 360 MYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWM 419
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493
+H+ +V++L R G VD+A F+ MP PD ++W L AC + +A + C
Sbjct: 420 EHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCE 479
Query: 494 L 494
L
Sbjct: 480 L 480
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 134/316 (42%), Gaps = 19/316 (6%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
++ SS+ N +T I+S+ S + ++ + +H + + + + LI S
Sbjct: 170 DMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCG 229
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
SI A+ +F +N+ + LI G ++N+ + F M ++RP+ +T V
Sbjct: 230 SIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVC 289
Query: 138 SVASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ L LG + +VK+G+ E A V L DM+ + G + A ++FD EK
Sbjct: 290 MCSKLRSFELGEWISQYVVKTGLVKESPAIANV-LMDMHAKCGNIKRACQIFDGMEEK-- 346
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGE 251
+++ W ++I G + G+ A+ F M ++ ++SL+ G + +
Sbjct: 347 --TIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWR 404
Query: 252 LFEQMP-EKGVVSWT----AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
F M + + W M++ + G ++A M ++ + + L AC
Sbjct: 405 CFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNM---PIKPDMIVWRTLLGAC 461
Query: 307 AKVGALEAGVRVHNYI 322
G + +V N +
Sbjct: 462 XXQGNISLANQVMNXL 477
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 245/511 (47%), Gaps = 49/511 (9%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNL 94
SLI ++ S Q+HA + L S T+ + A L I A +FD + +++
Sbjct: 75 SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDV 134
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+N ++ GL N+ + F M+ V + +T V L L +H
Sbjct: 135 PAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVY 194
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VK G++ + FV L D+Y +LG A VF + ++ WN +I+GC + G
Sbjct: 195 AVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF----HGMECRDLVTWNSIISGCEQRGQ 250
Query: 215 LRKAVELF----GMMPKKNVASWVSLI-------DG---------FMRKG---------- 244
A+++F G +V + VSL DG MR+G
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310
Query: 245 ----------DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVR 293
+++ A +F+ MP + VSW +I G+ QNG A +A+ + M G++
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
A T VS L A + +GAL+ G+R+H + +GT L+D+YAKCG + A L+
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLL 430
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + + W A+I GL +HG +A+ F +M G +PD F+++L AC ++G V
Sbjct: 431 FEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLV 490
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
+FFD M+ Y I P KH+ + ++L R GQ+D+A NFI MP PD +WGAL
Sbjct: 491 DQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLG 550
Query: 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
ACR H + ++ K+A Q+ L+ P+ + Y
Sbjct: 551 ACRIHGNVEMGKVASQNLFELD---PENVGY 578
>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
Length = 824
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 252/490 (51%), Gaps = 15/490 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ L
Sbjct: 238 MVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGL 297
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ IDYA IFD K++ +N+LI G ++ I
Sbjct: 298 ELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQL 357
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M +++ + +T + + A L LG+ + C ++ E D + DMY + G
Sbjct: 358 MRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGS 417
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS 235
A KVFD T +K+ ++LWN L+ ++ G +A+ LF M NV +W
Sbjct: 418 VVDAKKVFDSTVQKD----LILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNL 473
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G ++SWT M+NG QNG +E+A+ +M ++G
Sbjct: 474 IILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCSEEAILFLRKMQESG 533
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAA 350
+R N F++ ALSAC + +L G +H YI N +I T+LVDMYAKCG+I A
Sbjct: 534 MRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCGDINKA 593
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWY 409
VFG +L + AMI A++G ++A+ ++ + G +PD +L+AC +
Sbjct: 594 ERVFGSKLYSELPLYNAMISAYALYGNVKEAVALYRSLEEDVGIKPDNITITNVLSACNH 653
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G + A+ F M + ++P ++H+ ++V+LL+ G+ +KAL+ I +MP PD +
Sbjct: 654 AGDINQAIEIFTDMVSKHGMKPCLEHYGLMVDLLASAGETEKALSLIEEMPYKPDARMIQ 713
Query: 470 ALFCACRTHK 479
+L +C+ +
Sbjct: 714 SLVASCKKQQ 723
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 209/456 (45%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 82 QQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKC 141
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H + K+G+ F
Sbjct: 142 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 201
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ L M
Sbjct: 202 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLLSDM 257
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ V + +++++G + + G +
Sbjct: 258 RKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI 317
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +F++M EK VV+W +I+G+ G E A+ M M ++ + T+ + +SA
Sbjct: 318 DYAEMIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAA 377
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + VDMYAKCG++ A VF T +KDL+ W
Sbjct: 378 ARTQNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWN 437
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 438 TLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSS 497
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 498 GTF-PNMISWTTMMNGLVQNGCSEEAILFLRKMQES 532
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 134/303 (44%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 142 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 201
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M G
Sbjct: 202 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEG 261
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V TV + LSA A + +E G + H N L +GT++++ Y K G I+ A
Sbjct: 262 VEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAE 321
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
++F EKD++TW +I G G E AI + M + D +++A +
Sbjct: 322 MIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQ 381
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+KL + E + + V++ ++ G V A + + D ++W L
Sbjct: 382 NLKLGKE-VQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQK-DLILWNTL 439
Query: 472 FCA 474
A
Sbjct: 440 LAA 442
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 183/299 (61%), Gaps = 1/299 (0%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G ++KA +F M KN +W ++IDG+MR G + A +LF++MPE
Sbjct: 84 VMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPE 143
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
++SWTAM+NGF + G E+AL F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 144 PDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWV 203
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 204 HRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA 263
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +P+ F LTAC + G V L FF SM+ DY I P ++H+
Sbjct: 264 HESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGC 323
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNL 496
+V+L SR G+++ AL + MP P+ V+ G+L ACR H +T +A+ ++ LN+
Sbjct: 324 LVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNV 382
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GAL 312
Q + +VSWT+ I +++ +A F M AGV T ++ LS C G+
Sbjct: 5 QSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGSE 64
Query: 313 EAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLV---------------- 353
G +H Y +C GL +GTA++ MY+K G ++ A LV
Sbjct: 65 TLGDLLHGY-ACK-LGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMI 122
Query: 354 ---------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
F + E DL++WTAM+ G G +E+A+ +F++M SG +PD
Sbjct: 123 DGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYV 182
Query: 399 VFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+A L AC G + L L + S F + +V+ +++L R G V+ A
Sbjct: 183 AIIAALNACTNLGALSLGLWVHRYVMSQDF----KNNVRVSNSLIDLYCRCGCVEFAREV 238
Query: 456 INKMPETPDFVIWGALF 472
+KM E V W ++
Sbjct: 239 FDKM-EKRTVVSWNSVI 254
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T ++ S + A +FD+ KN +N +I G + + + F M
Sbjct: 86 VGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKM---- 141
Query: 125 VRPNRLTYP-----FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
P+ +++ FV K +L+ R + SGV+ D + + LG
Sbjct: 142 PEPDLISWTAMVNGFVKKGFHEEALVWF-REMQI----SGVKPDYVAIIAALNACTNLGA 196
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
V ++ +V + N LI+ + G + A E+F M K+ V SW S+I G
Sbjct: 197 LSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVG 256
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
F + NG A ++L F +M + G + N T
Sbjct: 257 F-------------------------------AANGNAHESLVYFRKMQEEGFKPNAVTF 285
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
AL+AC+ VG ++ G+R + D+ + I LVD+Y++ G +E A
Sbjct: 286 TGALTACSHVGLVDEGLRFFQSMK-RDYNISPRIEHYGCLVDLYSRAGRLEDA 337
>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
[Oryza sativa Japonica Group]
gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
Length = 836
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 12/406 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+ +N ++ G + + + + ML+ +RP+ T + KSVA+ LL G +H
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C +++ +E D + L DMY + G+ A KV D +N + WN L+ G +
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN----LTTWNSLVAGYANA 371
Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
G A+EL +M K ++ +W LI G+ G +A L Q+ GV VSW
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G NGE E + +M GV+ + T+ L ACA + + G +H +
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + TAL+DMY+K G++ +A ++F ++K+L+ AM+ GLA+HG+ +AI+
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M SG +PD F A+LTAC G V +FDSM Y ++P+ +++ +V+LL+
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
R G +D+A++FI + P P WGAL C H + +A++A ++
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 186/433 (42%), Gaps = 38/433 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLA 105
Q+H+ + L R+T L+ A L + A + + K+ ++N + LA
Sbjct: 73 QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
E + I+ F M V + T V + L GR +H +K ++
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LA MY + A +V D + SV+ WN ++ C+++G + A+EL M
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVACCARLGLVDDALELAARM 248
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+ PE V +W +++G S++G +AL +
Sbjct: 249 SRSG---------------------------PEPNVATWNTVLSGCSRHGRDREALGVVA 281
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
ML G+R + TV S L + A G L G+ +H + N GTALVDMYAKCG
Sbjct: 282 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCG 341
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++ A V + ++L TW +++ G A GR++ A++ + M + +PD T + ++T
Sbjct: 342 RLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLIT 401
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET--- 462
+GQ A+ ++ + P+V T +++ G+ + + F ++M +
Sbjct: 402 GYSMNGQSSQAVLLLRQIKA-AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQ 460
Query: 463 PDFVIWGALFCAC 475
P V L AC
Sbjct: 461 PSLVTMSVLLRAC 473
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K+ +++H + ++T LI S S+ A IF+ KNL + N ++ GL
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
A + + I F M ++P+ +T+ + + S+ L++ G + K GV+
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPT 599
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
+ D+ + G A + +P + W L+ GCS G L A
Sbjct: 600 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 656
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
LF + P N A+++ +++ + + +A L M +GV SW + G F
Sbjct: 657 NLFILEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 715
Query: 272 SQNGEAEKALAMFFQML 288
+G+ A ++ L
Sbjct: 716 EVDGKPHPETAEIYEEL 732
>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/406 (33%), Positives = 210/406 (51%), Gaps = 17/406 (4%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
+++ + +I G +++S + F M+ V PN +T + + ASL L G +H
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C +K G+ + V L DMY + GK A VFD EK+ V WN +I G +
Sbjct: 375 CFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKD----VYTWNSMIGGYCQA 430
Query: 213 GYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV---- 262
GY KA ELF +MP NV +W ++I G ++ GD +A +LF+ M + G V
Sbjct: 431 GYGGKAYELFMRLRESTVMP--NVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNT 488
Query: 263 -SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
SW ++I G+ Q GE KALA+F QM N T++S L ACA V A + +H
Sbjct: 489 ASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGC 548
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ + + A+ +LVD YAK GNI+ + VF KD++TW ++I G +HG + A
Sbjct: 549 VLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSA 608
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
Q F +M G P+ +I+ A +G V + F S+ ++ I P++ H+ +V+
Sbjct: 609 FQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVD 668
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G++ A+ FI MP PD IW +L ACR H + +A +A
Sbjct: 669 LYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLA 714
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 230/474 (48%), Gaps = 21/474 (4%)
Query: 17 TNIKSSHKPSNNITETHIISLIHSS---NSTKQLRQIHAQI-ILHNLFASSRITTQLISS 72
T I S K + ++ I+L+ + S + R++H ++ ++H + + + T+L+S
Sbjct: 66 TAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRV--NPFVETKLVSM 123
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ + A +FD +NL+ ++ +I + ++ + F M+ V P+ +
Sbjct: 124 YAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLF 183
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
P + ++ + L + +H L+++ G+ + + +V+ GK A K F E
Sbjct: 184 PKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDE 243
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK 248
++ + WNV+I G + G +A L M K + ++ +I + + GD
Sbjct: 244 RDG----VSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDL 299
Query: 249 AGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L ++M G V +WT+MI+GFSQ+ +AL F +M+ AGV N T+ SA S
Sbjct: 300 VIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATS 359
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
ACA + +L+ G+ +H + + +G +L+DMY+KCG +EAA VF EKD+ T
Sbjct: 360 ACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYT 419
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +MI G G +A + F ++ S P+ + A+++ C +G A++ F M
Sbjct: 420 WNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIME 479
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDFVIWGALFCAC 475
D ++ + ++ ++G+ +KAL +M +P+ V ++ AC
Sbjct: 480 KDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPAC 533
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 170/395 (43%), Gaps = 21/395 (5%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT S S S + +IH I + + + LI S ++ A +F
Sbjct: 350 NTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVF 409
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLL 145
D K+++ +N +I G + + F+ + +V PN +T+ +S + +
Sbjct: 410 DTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDED 469
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+ GV+ + L Y QLG+ A +F + N S + + +
Sbjct: 470 QAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSI 529
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ C+ + +K E+ G + ++N+ S + SL+D + + G++K + +F M K +
Sbjct: 530 LPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDI 589
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV--- 318
++W ++I G+ +G ++ A +F QM + G+R N T+ S + A G ++ G V
Sbjct: 590 ITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSS 649
Query: 319 ----HNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLA 373
H + D L A+VD+Y + G + +A + E D+ WT+++
Sbjct: 650 ITEEHQILPTLDHYL------AMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACR 703
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
HG A+ K++ EPD V +L +
Sbjct: 704 FHGNLNLAVLAAKRLHE--LEPDNHVIYRLLVQAY 736
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 6/286 (2%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---FGMMPKKNVASWV 234
G R A D ++ S + L+ C +G + EL G++ + N
Sbjct: 59 GLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVET 118
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
L+ + + G LK A ++F+ M E+ + +W+AMI +S+ ++ + +FF M+ GV
Sbjct: 119 KLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLP 178
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ F L AC LE +H+ + + +++ + KCG + A F
Sbjct: 179 DAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFF 238
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQV 413
G E+D ++W MI G G ++A + M G +P G V I+ A + G
Sbjct: 239 GNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKP-GLVTYNIMIASYSQLGDC 297
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
L ++ M + P V T +++ S+ ++ +AL+F KM
Sbjct: 298 DLVIDLKKKME-SVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM 342
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS----CNDFGL 329
NG +A+ + G + + T ++ L C VG++E G +H + N F
Sbjct: 58 NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPF-- 115
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+ T LV MYAKCG ++ A VF +E++L TW+AMI + R+++ ++ F MM
Sbjct: 116 ---VETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMM 172
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G PD +F IL AC ++ + S+ + ++ ++ + G++
Sbjct: 173 GDGVLPDAFLFPKILQACGNCEDLE-TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKL 231
Query: 450 DKALNFINKMPETPDFVIWGALFCA 474
A F M E D V W +
Sbjct: 232 SLARKFFGNMDER-DGVSWNVMIAG 255
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 125/320 (39%), Gaps = 30/320 (9%)
Query: 69 LISSASLHKSIDYALSIF-----DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
+IS + D A+ +F D +N +N LI G + ++ F M L
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+ PN +T + + A++ + +H +++ +E + V L D Y + G + +
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYS 577
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG 239
VF+ K+ ++ WN +I G G A +LF M + N + S+I
Sbjct: 578 RTVFNGMSSKD----IITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHA 633
Query: 240 FMRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+ G + K +F + E+ + + AM++ + ++G A+ + D +
Sbjct: 634 YGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEF---IEDMPIEP 690
Query: 295 NDFTVVSALSACAKVGALEAGV----RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+ S L+AC G L V R+H N I LV YA G E
Sbjct: 691 DVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNH-----VIYRLLVQAYALYGKFEQT 745
Query: 351 SLVFGETKEKDLLTWTAMIW 370
V KE + TA W
Sbjct: 746 LKVRKLGKESAMKKCTAQCW 765
>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 842
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 12/406 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+ +N ++ G + + + + ML+ +RP+ T + KSVA+ LL G +H
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C +++ +E D + L DMY + G+ A KV D +N + WN L+ G +
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN----LTTWNSLVAGYANA 371
Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
G A+EL +M K ++ +W LI G+ G +A L Q+ GV VSW
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G NGE E + +M GV+ + T+ L ACA + + G +H +
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ + TAL+DMY+K G++ +A ++F ++K+L+ AM+ GLA+HG+ +AI+
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M SG +PD F A+LTAC G V +FDSM Y ++P+ +++ +V+LL+
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
R G +D+A++FI + P P WGAL C H + +A++A ++
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 186/433 (42%), Gaps = 38/433 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLA 105
Q+H+ + L R+T L+ A L + A + + K+ ++N + LA
Sbjct: 73 QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
E + I+ F M V + T V + L GR +H +K ++
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LA MY + A +V D + SV+ WN ++ C+++G + A+EL M
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVACCARLGLVDDALELAARM 248
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+ PE V +W +++G S++G +AL +
Sbjct: 249 SRSG---------------------------PEPNVATWNTVLSGCSRHGRDREALGVVA 281
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
ML G+R + TV S L + A G L G+ +H + N GTALVDMYAKCG
Sbjct: 282 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCG 341
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++ A V + ++L TW +++ G A GR++ A++ + M + +PD T + ++T
Sbjct: 342 RLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLIT 401
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET--- 462
+GQ A+ ++ + P+V T +++ G+ + + F ++M +
Sbjct: 402 GYSMNGQSSQAVLLLRQIKA-AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQ 460
Query: 463 PDFVIWGALFCAC 475
P V L AC
Sbjct: 461 PSLVTMSVLLRAC 473
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K+ +++H + ++T LI S S+ A IF+ KNL + N ++ GL
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
A + + I F M ++P+ +T+ + + S+ L++ G + K GV+
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPT 599
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
+ D+ + G A + +P + W L+ GCS G L A
Sbjct: 600 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 656
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
LF + P N A+++ +++ + + +A L M +GV SW + G F
Sbjct: 657 NLFILEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 715
Query: 272 SQNGEAEKALAMFFQML 288
+G+ A ++ L
Sbjct: 716 EVDGKPHPETAEIYEEL 732
>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
Length = 761
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 237/488 (48%), Gaps = 54/488 (11%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + +D AL +FD +N+ +N ++ G +N + I F+ M P
Sbjct: 168 MISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRM------PE 221
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM----YVQLGKTRGAF 184
R + + + L L+ + D VH ++ Y Q G+ A
Sbjct: 222 RDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKAR 281
Query: 185 KVFDETP------------EKN---------------------------KSESVLLWNVL 205
++FD+ P E+N K + WN +
Sbjct: 282 QLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTM 341
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
I+G ++ + +A LF MP + +W S+I GF +KG+L+ A LF +P+K +VSW
Sbjct: 342 ISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWN 401
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+MI G+ NG+ + A ++ QML G + + T+ S LS C+ AL G+++H I+
Sbjct: 402 SMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT 461
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQY 384
I +L+ MY++CG I A +F E K +K++++W AMI G A HG A++
Sbjct: 462 VIP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALEL 520
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F+ M P F+++L AC ++G VK F SM ++ IEP ++H +V+++
Sbjct: 521 FELMKRLKVRPTYITFISVLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVG 580
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
R GQ+++A++ IN MP PD +WGAL ACR H + ++A++A ++ L P++ +
Sbjct: 581 RHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLE---PESSAP 637
Query: 505 CQTFMQQK 512
C +++
Sbjct: 638 CHGLRERQ 645
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 22/247 (8%)
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
+FDE PE++ + WN +I+G ++ G + +A++LF M ++NV SW +++ GF++ GD
Sbjct: 153 LFDEMPERD----CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGD 208
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF----QMLDAGVRANDFTVVS 301
+++A E F +MPE+ S +A++ G QNGE ++A + Q D G + + ++
Sbjct: 209 VERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNIL- 267
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--------IGTALVDMYAKCGNIEAASLV 353
L+ + G ++ ++ + I D G K +++ Y K +I +A ++
Sbjct: 268 -LAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVL 326
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + KE+D ++W MI G E+A F++M PD + ++++ G +
Sbjct: 327 FDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM----PNPDTLTWNSMISGFAQKGNL 382
Query: 414 KLALNFF 420
+LA F
Sbjct: 383 ELARALF 389
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 130/275 (47%), Gaps = 46/275 (16%)
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+ P+ + S + N I+ + G + +A LF MP++N+ +W S+I G++R+ ++ K
Sbjct: 57 QQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAK 116
Query: 249 AGELFEQMPEKGVVSWTAMINGF-SQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +LF++MP++ VVSW MI+G+ S G E+ +F +M +
Sbjct: 117 ARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPE----------------- 159
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ +S N ++ Y + G ++ A +F +E+++++W
Sbjct: 160 ------------RDCVSWN----------TMISGYTRSGRMDEALQLFDSMQERNVVSWN 197
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AM+ G +G E+AI++F +M E D A++ +G++ A + R
Sbjct: 198 AMVTGFLQNGDVERAIEFFMRM----PERDSASLSALVAGLIQNGELDEAKRILLTTRRQ 253
Query: 427 YFIEPSVKH-HTVVVNLLSRVGQVDKALNFINKMP 460
+ + H + +++ + G+VDKA +++P
Sbjct: 254 DDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIP 288
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 213/406 (52%), Gaps = 12/406 (2%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
L +N ++ G A + + ++ ML + P+ T + KSVA+ ++ G +H
Sbjct: 271 TLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVH 330
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
C ++ G+ DA+ L DMY + G+ A +VFD +N + WN L+ G +
Sbjct: 331 CFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRN----LATWNSLVAGHAYA 386
Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSW 264
G A+EL M + NV +W LI G+ G +A L Q+ G VVSW
Sbjct: 387 GQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSW 446
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
T++I+G NGE E + F +M GV+ + T++ L ACA + L+ G +H +
Sbjct: 447 TSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALR 506
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ +GTAL+DMY+K G++ +A +FG + K+L+ AM+ GLA+HG+ +AI
Sbjct: 507 RAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITL 566
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F + SG +PD F A+LTAC G + +FD+M Y + P+ +++ +V+LL+
Sbjct: 567 FHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLA 626
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
R G +D+A+ I + P P +WGAL C H + +A++A ++
Sbjct: 627 RSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARN 672
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 172/388 (44%), Gaps = 35/388 (9%)
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
K+ ++N + LAE + I F M V + V + + G+ +
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAV 191
Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H +K+G V+ V LA MY + A V +S + W+ ++ C
Sbjct: 192 HAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRS---VAWDAVVACCV 248
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G + A+EL G M + DG PE + +W A+++G
Sbjct: 249 RLGLVDDAMELAGRMAR----------DG-----------------PEPTLATWNAVLSG 281
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+++G +ALA+ +ML+ G+ + TV S L + A G + G+ VH + +
Sbjct: 282 CARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPD 341
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
GTALVDMYAKCG ++ A VF + ++L TW +++ G A G++E A++ ++M
Sbjct: 342 AYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKR 401
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+ +P+ T + ++T +G A+ ++ + P+V T +++ G+ +
Sbjct: 402 NRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKA-AGLTPNVVSWTSLISGSCHNGEYE 460
Query: 451 KALNFINKMPE---TPDFVIWGALFCAC 475
+ NF +M + P V L AC
Sbjct: 461 DSFNFFKEMQKDGVQPSLVTMLVLLRAC 488
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 159/363 (43%), Gaps = 17/363 (4%)
Query: 32 THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
T + SL+ S + +R ++H + H L + T L+ + +D A +FD
Sbjct: 308 TTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDT 367
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+NL +N L+ G A F++ + M R + PN T+ + + L S
Sbjct: 368 LEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQA 427
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
L I +G+ + L G+ +F F E + S++ VL+
Sbjct: 428 MLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRA 487
Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
C+ + L+K EL ++ ++ +LID + + G L A +F ++ K +V
Sbjct: 488 CAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCC 547
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
AM+ G + +G++ +A+ +F + +G++ + T + L+AC +G + G + +
Sbjct: 548 NAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMET 607
Query: 325 NDFGLKGAIGTA-----LVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
G + TA +VD+ A+ G + EA +L+ + W A++ G +IHG
Sbjct: 608 K----YGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNL 663
Query: 379 EQA 381
+ A
Sbjct: 664 DLA 666
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 112/287 (39%), Gaps = 61/287 (21%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
+L D R G + L E+ E K V W + ++ GE ++A+ F +M
Sbjct: 104 ALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQAR 163
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA-------LVDMYAK 343
GV A+ + + L AC + A G VH + LK + A L MYA+
Sbjct: 164 GVAADGYALARVLHACGRAAARREGKAVHAH------ALKAGLVDAHPLVPGFLAGMYAE 217
Query: 344 CGNIEAASLVF------------------------------------GETKEKDLLTWTA 367
++ AA+ V + E L TW A
Sbjct: 218 GADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNA 277
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN---FFDSMR 424
++ G A HGR +A+ ++M+ G PD T ++L + +G V+ + FF
Sbjct: 278 VLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFF---- 333
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ + P T +V++ ++ G++D A + + E + W +L
Sbjct: 334 LRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTL-EHRNLATWNSL 379
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 17/255 (6%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI S S+ A IF KNL N ++ GLA + I+ F + R
Sbjct: 515 VGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSG 574
Query: 125 VRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
++P+ +T+ + + S+ L++ G + K GV A + D+ + G A
Sbjct: 575 LKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEA 634
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLIDG 239
+ + +P + LW L+ GCS G L A LF + P N A+++ ++
Sbjct: 635 MALIERSPVDPGAS---LWGALLTGCSIHGNLDLAEVAARNLFRLEP-YNSANYLMIMSL 690
Query: 240 FMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---FSQNGEAEKALAMFFQMLDAG 291
+ + +A L M +GV SW + G F +G A + L +
Sbjct: 691 YEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEICEELMSL 750
Query: 292 VRANDFTVVSALSAC 306
VR T ++C
Sbjct: 751 VRQIKMTGYVPDTSC 765
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 222/447 (49%), Gaps = 66/447 (14%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S+ Q++QIHA + +SR T+ + +N LIR
Sbjct: 26 SSNQIKQIHAVLFTSKALVASRWKTKCV--------------------------YNTLIR 59
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
+++ ++ F ML V+PN LT+P + K+ S +S G LH + GV +
Sbjct: 60 SYLTTGQYKASLALFTHMLASQVQPNNLTFPSLIKAACSSFSVSSGVALHGQAFRRGVLW 119
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D FV+ Y ++G + + K+FD+ +++ C
Sbjct: 120 DPFVQTSFVRFYGEVGDLKSSRKMFDD---------------ILDPC------------- 151
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
V + SL+D R G++ A ELF++MP VVSWT +INGFS+NG KAL
Sbjct: 152 -------VVACNSLLDACGRNGEMNSAFELFQKMPVTDVVSWTTVINGFSKNGLHAKALM 204
Query: 283 MFFQMLD---AGVRANDFTVVSALSACAKV--GALEAGVRVHNYISCNDFGLKGAIGTAL 337
+F +M+ A + N+ T V LS+CA G + G ++H YI + L +GTAL
Sbjct: 205 VFGEMIQNQRAVITPNEATFVCVLSSCANFDQGGIRLGKQIHGYILTKEIILTPILGTAL 264
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMY K G++E A +F + ++K + W A+I LA +GR +Q ++ F+ M S P+G
Sbjct: 265 LDMYGKAGDLEMALTIFHQIRDKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNVHPNG 324
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
LAILTAC V L + F S+ ++ I P+ +H+ +V+L+ R G + A NFI
Sbjct: 325 ITLLAILTACARYKLVDLGIQLFSSICSEFKIIPTSEHYGCIVDLIGRAGLLVDAANFIK 384
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIA 484
+P PD ++GAL AC+ H++ ++
Sbjct: 385 NLPFEPDASVFGALLGACKIHENAELG 411
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 215/449 (47%), Gaps = 43/449 (9%)
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
L + + T L+S+ + S D+A +FD + L + R + I+ F
Sbjct: 42 LHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFG 101
Query: 119 FMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M+ V P+ + + + + G+ +H LIV SG+E D FV L +Y
Sbjct: 102 DMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVY 161
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ GK + +VFD+ MP ++ +W
Sbjct: 162 GECGKLAVSRRVFDD-----------------------------------MPSRSTITWN 186
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML---DAG 291
+++ + R G + A ELF MP + VVSW ++ G+ G +AL +F QM+
Sbjct: 187 AMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCA 246
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V N T+ + L ACA G LE G+ VH YI N G + L+DMY KCG+I+ A
Sbjct: 247 VHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNAL 306
Query: 352 LVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + +++DL +WT +I GLA+HGR A++ F M +G PD + +L AC +
Sbjct: 307 QVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHG 366
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V L +F SM + I P ++H+ +++LL RVG++ +A + I MP P+ VIWGA
Sbjct: 367 GLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGA 426
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
AC+ H + ++ KIA + L+ P
Sbjct: 427 FLSACKVHGNMELGKIAAEELTRLDPDDP 455
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 280/554 (50%), Gaps = 89/554 (16%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
TT P +++ +H+ + L+ + NS Q +Q+ AQI+ NL + ++L
Sbjct: 22 TTKWDPVQSLQLNHQS---------LVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRL 72
Query: 70 I--SSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
I S+ + +++D A +F +FTP N+ ++N +I ++ + + C + M+R V
Sbjct: 73 IFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVS 130
Query: 127 PNRLTYPFVSKSVASLS-------------LLSLGRGLHCLIVKS-------GVEYDAFV 166
P+R T+ ++ K+ + LS LSLG L +VK GV F
Sbjct: 131 PDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFA 190
Query: 167 RVHLADM---------YVQLGKTRGA----FKVFDETPEKNK------------------ 195
R+ D+ Y + G + A FK+ + E ++
Sbjct: 191 RMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRL 250
Query: 196 ---------------SESVLLWNVLIN---GCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
S +++L N L++ C + G ++A F M KK++ SW +++
Sbjct: 251 GKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRA---FDAMKKKDMRSWNTMV 307
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL-AMFFQM-LDAGVRAN 295
GF+R GD++ A +F+QMP++ +VSW +++ G+S+ G ++ + +F++M + V+ +
Sbjct: 308 VGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPD 367
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T+VS +S A G L G VH + + +AL+DMY KCG IE A +VF
Sbjct: 368 RVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFK 427
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
EKD+ WT+MI GLA HG +QA+Q F +M G P+ LA+LTAC +SG V+
Sbjct: 428 TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEE 487
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN-KMPETPDFVIWGALFCA 474
L+ F+ M+ + +P +H+ +V+LL R G+V++A + + KMP P +WG++ A
Sbjct: 488 GLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSA 547
Query: 475 CRTHKDTKIAKIAL 488
CR +D + A++AL
Sbjct: 548 CRGGEDIETAELAL 561
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + +T +IS ++ R +H +I L + +++ LI I+ A
Sbjct: 365 KP-DRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAF 423
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F T K++ ++ +I GLA + + Q + F M V PN +T V + +
Sbjct: 424 MVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSG 483
Query: 144 LLSLGRGLHC---LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L+ GLH + K G + + L D+ + G+ A + + S+S
Sbjct: 484 LVE--EGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQS-- 539
Query: 201 LWNVLINGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W +++ C + A EL + P+K +V L + + G + + E M
Sbjct: 540 MWGSILSACRGGEDIETAELALTELLKLEPEKE-GGYVLLSNIYATVGRWGYSDKTREAM 598
Query: 257 PEKGV 261
+GV
Sbjct: 599 ENRGV 603
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 183/287 (63%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ LI+ SK L A ++F + KN SW ++++GFMR G+++ A +LF++MP
Sbjct: 130 VMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPT 189
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ +SWTA+ING ++G +E+AL F QM +GV A+ ++++ L+ACA +GAL G+ V
Sbjct: 190 RDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWV 249
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H ++ +F I +L+DMY++CG IE A VF + ++ L++W ++I G A++G
Sbjct: 250 HRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFA 309
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++++++F M G +PDG + LTAC ++G V L FD+M+ + I P ++H+
Sbjct: 310 DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGC 369
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+V+L R G+++ ALN I +MP P+ V+ G+L ACRTH D +A+
Sbjct: 370 IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 46/250 (18%)
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE--AGVRV 318
+V WT+ + + +NG+ +A A F +M AGV N T ++ LSACA + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 319 HNYISCNDFGLKGA---IGTALVDMYAKC------------------------------- 344
H Y +C +GL +GTAL+DMY+KC
Sbjct: 117 HGY-ACK-YGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G IE A +F E +D ++WTA+I GL HG EQA++ F +M SG D +A+L
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 405 TACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
AC G + L L F F + ++K ++++ SR G ++ A KM +
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEF----KDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 290
Query: 462 TPDFVIWGAL 471
V W ++
Sbjct: 291 R-TLVSWNSI 299
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 24/316 (7%)
Query: 51 HAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
HA+ + +NL + ++ +++ + I+ A+ +FD ++ + LI GL ++ +
Sbjct: 148 HARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGY 207
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ + F M R V + ++ V + A L L+LG +H ++ + + +
Sbjct: 208 SEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNS 267
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK- 228
L DMY + G A +VF K +++ WN +I G + G+ +++E F M K+
Sbjct: 268 LIDMYSRCGCIEFARQVF----VKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEG 323
Query: 229 ---NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKA 280
+ S+ + G + K ELF+ M ++ + +++ + + G E A
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDA 383
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---GAIGTAL 337
L M +M ++ N+ + S L+AC G + R+ ++ F L A L
Sbjct: 384 LNMIEEM---PMKPNEVVLGSLLAACRTHGDVNLAERLMKHL----FKLDPEGDAYYVLL 436
Query: 338 VDMYAKCGNIEAASLV 353
++YA G + A+ V
Sbjct: 437 SNIYAAIGKWDGANNV 452
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 10/449 (2%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+ LR +H++IIL +L +S + +L+ + + K + A +FD +N+ I NV+IR
Sbjct: 56 RTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY 115
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N + + F M +VRP+ T+P V K+ + + +GR +H K G+
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
FV L MY + G A V DE ++ V+ WN L+ G ++ A+E+
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRD----VVSWNSLVVGYAQNQRFDDALEVCRE 231
Query: 225 MPKKNVA----SWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
M ++ + SL+ ++ ++F +M +K +VSW MI + +N
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ ++ +M G + ++ S L AC AL G ++H YI + AL+
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG +E A VF K +D+++WTAMI GR A+ F K+ SG PD
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+ L AC ++G ++ + F M Y I P ++H +V+LL R G+V +A FI
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIA 487
M P+ +WGAL ACR H DT I +A
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLA 500
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 233/481 (48%), Gaps = 45/481 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++H +I + + + LI+ I A +FD ++ +N +I G EN
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M V P+ +T V + +L LGR +H ++K+G + V
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L M+ +G A VF + K+ ++ W +I+G K G KAVE + +M
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKD----LVSWTAMISGYEKNGLPEKAVETYTIMEH 390
Query: 228 KNV-----------------------------------ASWV----SLIDGFMRKGDLKK 248
+ V S+V SLID + + + K
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F ++P K V+SWT++I G N + +AL FFQ + ++ N T+VS LSACA+
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNSVTLVSVLSACAR 509
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GAL G +H + G G + AL+DMY +CG +E A F EKD+ +W +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNIL 568
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G A G+ A++ F KM+ S PD F ++L AC SG V L +F+SM +
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ VV+LL R G+++ A FI KMP PD IWGAL ACR +++ ++ ++A
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688
Query: 489 Q 489
Q
Sbjct: 689 Q 689
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 221/483 (45%), Gaps = 76/483 (15%)
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
R+ L+S + A +F ++L +NVL+ G A+ +F ++ + ML +
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+RP+ T+P V ++ L L+ GR +H +++ G E D V L MYV+ G A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249
Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
VFD P +++ + WN +I+G
Sbjct: 250 RLVFDRMPRRDR----ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK----GDLKKAGELFEQMPEKGVVSW 264
C +G R E+ G + K + VS+ + ++ G +A +F +M K +VSW
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
TAMI+G+ +NG EKA+ + M GV ++ T+ S LSACA +G L+ G+ +H +
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ +L+DMY+KC I+ A VF K++++WT++I GL ++ R +A+ +
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKL-----ALNFFDSMRFDYFI---------- 429
F++M+ S +P+ +++L+AC G + A + FD F+
Sbjct: 486 FQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVR 544
Query: 430 --------------EPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALF 472
E V +++ ++ G+ A+ +KM E+ PD + + +L
Sbjct: 545 CGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604
Query: 473 CAC 475
CAC
Sbjct: 605 CAC 607
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 186/422 (44%), Gaps = 53/422 (12%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N LI L + + H M L V TY + + S G +H + K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
+ + L M+V+ G A+ VF + E++ + WNVL+ G +K GY +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERD----LFSWNVLVGGYAKAGYFDE 178
Query: 218 AVELF------GMMP---------------------------------KKNVASWVSLID 238
A+ L+ G+ P + +V +LI
Sbjct: 179 ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALIT 238
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+++ GD+ A +F++MP + +SW AMI+G+ +N + L +FF M + V + T
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ S +SAC +G G VH Y+ F + ++ +L+ M++ G + A +VF + +
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
KDL++WTAMI G +G E+A++ + M + G PD ++L+AC G + +
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI- 417
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCA 474
M ++ + + +V N L S+ +DKAL +++P + + W ++
Sbjct: 418 ----MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILG 472
Query: 475 CR 476
R
Sbjct: 473 LR 474
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 184/479 (38%), Gaps = 92/479 (19%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+T T +IS + + R++H +I A + LI S D A +F
Sbjct: 297 MTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK 356
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K+L + +I G +N + + + M V P+ +T V + A L LL G
Sbjct: 357 MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
LH ++G+ V L DMY + A +VF P KN
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN 476
Query: 195 -----------------KSESVLLWNVLINGCSKIG-----------YLRKAVELFGMMP 226
K SV L +VL + C++IG LR + G +P
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVL-SACARIGALSCGKEIHAHALRTGLGFDGFLP 535
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D ++R G ++ A F EK V SW ++ G++Q G+ A+ +F +
Sbjct: 536 N-------ALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHK 587
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+++ V ++ T S L AC++ G + G+ Y + A
Sbjct: 588 MIESDVNPDEITFTSLLCACSRSGMVTDGLE---YFESMEHKFHIA-------------- 630
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+L + +++ L GR E A ++ KKM +PD ++ A+L A
Sbjct: 631 -------------PNLKHYASVVDLLGRAGRLEDAYEFIKKM---PIDPDPAIWGALLNA 674
Query: 407 CWYSGQVKLALNFFDSMRFDYFIE---PSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
C V+L + + E SV ++ ++ NL + G+ D+ M E
Sbjct: 675 CRIYQNVELG-----ELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 222/466 (47%), Gaps = 46/466 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII------LHNLFASSRITTQLISSASLHKSID-----YAL 83
+ +I S QL Q+HA I LH + I + L S + + + YAL
Sbjct: 4 LQVIKQCKSISQLHQVHAHSITTGLLPLHTFPILNNILSTLSSLLTTSSNSNSIITFYAL 63
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
S+F + FN LIR + F + RLS+ P+ T+PFV K+ A L
Sbjct: 64 SLFHSIPNPSTFSFNTLIRIHTLLLSPLPALHLFSTLRRLSLPPDFHTFPFVLKASAQLH 123
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
LSL + LH +K G+ D F L +Y + A K+F E P +
Sbjct: 124 SLSLAQSLHSQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGD--------- 174
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
V S+ +LI G ++ + +A ELF++MP + +S
Sbjct: 175 --------------------------VVSYNALIHGLVKTRQISRARELFDEMPVRDEIS 208
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W MI G+S +A+ +F +M+ V+ ++ +VS LSACA++G LE G VH+YI
Sbjct: 209 WGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIK 268
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
N + + T LVD+YAKCG +E A VF EK + TW AM+ G AIHG ++
Sbjct: 269 RNRIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLE 328
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
YF +M+ G +PDG L +L C ++G V A FD M Y ++ KH+ + ++L
Sbjct: 329 YFSRMVSEGVKPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGKHYGCMADML 388
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+R G +++ + + MP D WG L CR H + ++AK A Q
Sbjct: 389 ARAGLIEEGVEMVKAMPSGGDVFAWGGLLGGCRIHGNVEVAKKAAQ 434
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 253/505 (50%), Gaps = 69/505 (13%)
Query: 51 HAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHF----TPKNLHIFNVLIRG 103
HA++I + +S +TT+++ +++ ++A +F + ++ +++N +I+
Sbjct: 2 HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDPYLWNAMIKS 61
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+ + + + F ML + V ++ + V K+ + L + G +H + K+G+ D
Sbjct: 62 HSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSD 121
Query: 164 AFVRVHLA-------------------------------DMYVQLGKTRGAFKVFDETPE 192
F++ L D YV+ G A ++FD P
Sbjct: 122 LFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPR 181
Query: 193 KNKS------------------------------ESVLLWNVLINGCSKIGYLRKAVELF 222
+ K+ + ++ WN +I+G K G + A +LF
Sbjct: 182 EMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLF 241
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
M+P+++V +W ++IDG+ + G + +A LF+QMP + VV++ +M+ G+ QN +AL
Sbjct: 242 DMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALE 301
Query: 283 MFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F M ++ + ++ T+V LSA A++G L + +H YI F L G +G AL+DMY
Sbjct: 302 IFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMY 361
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+KCG+I+ A LVF + K + W AMI GLAIHG E A ++ +PD F+
Sbjct: 362 SKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFV 421
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L AC +SG VK L F+ MR + IEP ++H+ +V++LSR G ++ A N I +MP
Sbjct: 422 GVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI 481
Query: 462 TPDFVIWGALFCACRTHKDTKIAKI 486
P+ VIW AC HK+ + ++
Sbjct: 482 EPNDVIWRTFLTACSHHKEFETGEL 506
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRL-TTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V NR A+ +++ K SH + T ++S I + +H I+
Sbjct: 287 MAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQ 346
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
++ LI S SI +A+ +F+ K++ +N +I GLA + +S +
Sbjct: 347 FLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLL 406
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYV 175
+ R S++P+ +T+ V + + L+ GL C + K +E + D+
Sbjct: 407 QIERRSIKPDDITFVGVLNACSHSGLVK--EGLLCFELMRRKHKIEPRLQHYGCMVDILS 464
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G A + +E P E N ++W + CS
Sbjct: 465 RSGSIELAKNLIEEMPIEPND----VIWRTFLTACS 496
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 257/522 (49%), Gaps = 40/522 (7%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
++ + N++T ++S+ S Q+H ++ L S + L++ +
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGH 298
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +FD +L +N +I G +N F M+ ++P+ +T+
Sbjct: 299 LFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPL 358
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE-TP------ 191
++ + L G+ +HC I+++GV D F++ L D+Y + A K+FD+ TP
Sbjct: 359 LSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVC 418
Query: 192 -------------------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
E+ ++ SV L +VL C+ + L EL G +
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL-PACAGLAALTLGKELHGHIL 477
Query: 227 KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K +++D + + G L A + F + +K V W +MI SQNG+ E+A+
Sbjct: 478 KNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAID 537
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F QM AG + + ++ +ALSACA + AL G +H ++ F +AL+DMY+
Sbjct: 538 LFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYS 597
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCGN++ A VF +EK+ ++W ++I HGR + ++ F M+ G +PD FLA
Sbjct: 598 KCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLA 657
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I++AC ++GQV +++F M + I ++H+ +V+L R G++++A IN MP +
Sbjct: 658 IISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFS 717
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
PD +WG L ACR H + ++A++A ++ L+ PQ Y
Sbjct: 718 PDAGVWGTLLGACRLHGNVELAEVASRNLFDLD---PQNSGY 756
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 137/497 (27%), Positives = 228/497 (45%), Gaps = 55/497 (11%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++I NS R +H +I + + LI S + I A +FD
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K+ ++NV++ G +N + + F+ M R PN +T+ V AS +++ G
Sbjct: 209 PSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGS 268
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
LH L+V SG+E D+ V L MY + G A ++FD P+ + ++ WN +I+G
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTD----LVTWNGMISGY 324
Query: 210 SKIGYLRKAVELFGMM--------------------------PKKNVASWV--------- 234
+ G++ +A LF M K + ++
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384
Query: 235 ----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
+LID + + D++ A ++F+Q +V TAMI+G+ NG AL +F +L
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+RAN T+ S L ACA + AL G +H +I N G +G+A++DMYAKCG ++ A
Sbjct: 445 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC--- 407
F +KD + W +MI + +G+ E+AI F++M +GT+ D A L+AC
Sbjct: 505 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 564
Query: 408 --WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
+ G+ A + R D F E + ++++ S+ G +D A + M E +
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAE------SALIDMYSKCGNLDLACRVFDTMEEKNE- 617
Query: 466 VIWGALFCACRTHKDTK 482
V W ++ A H K
Sbjct: 618 VSWNSIIAAYGNHGRLK 634
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 184/413 (44%), Gaps = 43/413 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I+ + Q RQ HAQ++++ + + + T+L+ L + A +IF
Sbjct: 52 ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+N +IRG F + + ML P++ T+P+V K+ L+ ++LGR +H
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I G E D FV L Y + G A +FD P K+ +LWNV++NG K G
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG----VLWNVMLNGYVKNG 227
Query: 214 YLRKAVELFGMMPKK----------------------NVASWV----------------- 234
A +F M + N S +
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+ + + G L A LF+ MP+ +V+W MI+G+ QNG ++A +F +M+ A ++
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKP 347
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ T S L ++ L G +H YI N L + +AL+D+Y KC ++E A +F
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIF 407
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+ D++ TAMI G ++G A++ F+ ++ + ++L AC
Sbjct: 408 DQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 460
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 10/240 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+ ++ G A +F Q+ W MI GF+ G+ + AL +F+ML G +
Sbjct: 87 LLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPD 146
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+T + AC + ++ G VH+ I F L +G++L+ Y++ G I A +F
Sbjct: 147 KYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFD 206
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD + W M+ G +G ++ A F +M + T P+ F +L+ C ++
Sbjct: 207 RMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVC----ASEI 262
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGAL 471
+N F S + ++ + V N L ++ G + A + MP+T D V W +
Sbjct: 263 MIN-FGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKT-DLVTWNGM 320
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+VS L C L G + H + N G G +GT L+ MY CG A +F + +
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
W MI G + G+++ A+ ++ KM+ GT PD F ++ AC V L
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
D ++F F E V + ++ S G + A ++MP + D V+W +
Sbjct: 169 VHDKIQFMGF-ELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNVML 220
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 230/468 (49%), Gaps = 82/468 (17%)
Query: 25 PSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLHKSI 79
P +TH ++L+ + + K L+QIH+Q+I LHN FA S++ + S + +
Sbjct: 17 PPYKFLQTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISP--YGDL 74
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
YAL +F N I+N +IRGL+ + I ++V M+ PN TYPFV KS
Sbjct: 75 SYALLLFKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSC 134
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK-------------------- 179
A +S G+ +H I+K G + DAFV L MYVQ G+
Sbjct: 135 ARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYT 194
Query: 180 -------TRG----AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
+RG A ++FDE P ++ V+ WN +I G ++ G +A+ F M +
Sbjct: 195 ALITGYASRGFLDQALELFDEIPVRD----VVSWNAMIAGYTQSGRFEEALIFFEEMLRA 250
Query: 229 NV----------------------ASWVS-----------------LIDGFMRKGDLKKA 249
NV +WVS LID + + GDL+ A
Sbjct: 251 NVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENA 310
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
LFE + K V+SW MI G++ ++AL +F QML + V ND T++S L ACA +
Sbjct: 311 LHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANL 370
Query: 310 GALEAGVRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GAL G +H YI N L A+ T+L+DMYAKCGNIE A+ +F K L +W AM
Sbjct: 371 GALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAM 430
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
I G A+HG+ + AI F +M G PD F+ +L+AC ++G + L
Sbjct: 431 ISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLG 478
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 44/296 (14%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI+ + +D AL +FD +++ +N +I G ++ F+ + F MLR +V
Sbjct: 194 TALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVT 253
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T V + A L +G + I + G+E + V L DMY + G A +
Sbjct: 254 PNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHL 313
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV---------------- 230
F+ KN V+ WNV+I G + + ++A+ LF M + NV
Sbjct: 314 FEGIKNKN----VISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACAN 369
Query: 231 ------------------------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
A W SLID + + G+++ A ++F+ M K + SW A
Sbjct: 370 LGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNA 429
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
MI+GF+ +G+A+ A+++F +M G+ ++ T + LSAC G L+ G H +I
Sbjct: 430 MISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINHFHI 485
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 240/480 (50%), Gaps = 45/480 (9%)
Query: 47 LRQIHAQIILHNLF-ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+ QIHA I+ LF + QLI+S +I A ++F+ ++++ +N +I +
Sbjct: 1 MTQIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYS 60
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
++ ++ + M+ ++P+ T+ K+ +SL L +G + V G +D F
Sbjct: 61 RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V + ++Y + GK A VFD+ +++ V+ W +I G ++ G A++++ M
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFDKMVKRD----VVSWTTMITGFAQSGRPLDAIDIYRTM 176
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K+ SLID + + G L
Sbjct: 177 QKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKL 236
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +FE +P K V+SW A+I+GF+QNG A K LA +M ++G + + +++S+LSAC
Sbjct: 237 ELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSAC 296
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+VG L+ G +H +I L GTAL+DMYAKCG + A +F + + +DL+ W
Sbjct: 297 AQVGNLKVGKSLHGHI-VKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWN 355
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI IHG +A+ F KM + PD F ++L+AC +SG V+ +F +
Sbjct: 356 AMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDK 415
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
I+PS KH+ +V+LLSR GQV++A I M P IW AL C HK+ I ++
Sbjct: 416 SKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEM 475
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 122/289 (42%), Gaps = 14/289 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R AI ++ + + +I S +K +H ++ + + + T
Sbjct: 165 RPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQT 224
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI + + ++ A +F+ K++ + LI G A+N ++ V M +P
Sbjct: 225 SLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKP 284
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ ++ + A + L +G+ LH IVK + D L DMY + G A +F
Sbjct: 285 DLVSLISSLSACAQVGNLKVGKSLHGHIVKR-LYLDKVSGTALIDMYAKCGALTFARALF 343
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRK 243
D+ ++ ++LWN +I+ G +A+ LF M + N+ A++ SL+
Sbjct: 344 DQIEPRD----LILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHS 399
Query: 244 GDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQM 287
G +++ F + +K + + M++ S+ G+ E+A + M
Sbjct: 400 GLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESM 448
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 10/449 (2%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+ LR +H++IIL +L +S + +L+ + + K + A +FD +N+ I NV+IR
Sbjct: 56 RTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY 115
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N + + F M +VRP+ T+P V K+ + + +GR +H K G+
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
FV L MY + G A V DE ++ V+ WN L+ G ++ A+E+
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRD----VVSWNSLVVGYAQNQRFDDALEVCRE 231
Query: 225 MPKKNVA----SWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
M ++ + SL+ ++ ++F +M +K +VSW MI + +N
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ ++ +M G + ++ S L AC AL G ++H YI + AL+
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG +E A VF K +D+++WTAMI GR A+ F K+ SG PD
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+ L AC ++G ++ + F M Y I P ++H +V+LL R G+V +A FI
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIA 487
M P+ +WGAL ACR H DT I +A
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLA 500
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 233/481 (48%), Gaps = 45/481 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++H +I + + + LI+ I A +FD ++ +N +I G EN
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M V P+ +T V + +L LGR +H ++K+G + V
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L M+ +G A VF + K+ ++ W +I+G K G KAVE + +M
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKD----LVSWTAMISGYEKNGLPEKAVETYTIMEH 390
Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
+ V S+V SLID + + + K
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F ++P K V+SWT++I G N + +AL FFQ + ++ N T+VS LSACA+
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNSVTLVSVLSACAR 509
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GAL G +H + G G + AL+DMY +CG +E A F EKD+ +W +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNIL 568
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G A G+ A++ F KM+ S PD F ++L AC SG V L +F+SM +
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ VV+LL R G+++ A FI KMP PD IWGAL ACR +++ ++ ++A
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688
Query: 489 Q 489
Q
Sbjct: 689 Q 689
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 221/483 (45%), Gaps = 76/483 (15%)
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
R+ L+S + A +F ++L +NVL+ G A+ +F ++ + ML +
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+RP+ T+P V ++ L L+ GR +H +++ G E D V L MYV+ G A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249
Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
VFD P +++ + WN +I+G
Sbjct: 250 RLVFDRMPRRDR----ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK----GDLKKAGELFEQMPEKGVVSW 264
C +G R E+ G + K + VS+ + ++ G +A +F +M K +VSW
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
TAMI+G+ +NG EKA+ + M GV ++ T+ S LSACA +G L+ G+ +H +
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ +L+DMY+KC I+ A VF K++++WT++I GL ++ R +A+ +
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKL-----ALNFFDSMRFDYFI---------- 429
F++M+ S +P+ +++L+AC G + A + FD F+
Sbjct: 486 FQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVR 544
Query: 430 --------------EPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALF 472
E V +++ ++ G+ A+ +KM E+ PD + + +L
Sbjct: 545 CGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604
Query: 473 CAC 475
CAC
Sbjct: 605 CAC 607
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 186/422 (44%), Gaps = 53/422 (12%)
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
N LI L + + H M L V TY + + S G +H + K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
+ + L M+V+ G A+ VF + E++ + WNVL+ G +K GY +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERD----LFSWNVLVGGYAKAGYFDE 178
Query: 218 AVELF------GMMP---------------------------------KKNVASWVSLID 238
A+ L+ G+ P + +V +LI
Sbjct: 179 ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALIT 238
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+++ GD+ A +F++MP + +SW AMI+G+ +N + L +FF M + V + T
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ S +SAC +G G VH Y+ F + ++ +L+ M++ G + A +VF + +
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
KDL++WTAMI G +G E+A++ + M + G PD ++L+AC G + +
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI- 417
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCA 474
M ++ + + +V N L S+ +DKAL +++P + + W ++
Sbjct: 418 ----MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILG 472
Query: 475 CR 476
R
Sbjct: 473 LR 474
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 107/468 (22%), Positives = 182/468 (38%), Gaps = 92/468 (19%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+T T +IS + + R++H +I A + LI S D A +F
Sbjct: 297 MTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK 356
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K+L + +I G +N + + + M V P+ +T V + A L LL G
Sbjct: 357 MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
LH ++G+ V L DMY + A +VF P KN
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN 476
Query: 195 -----------------KSESVLLWNVLINGCSKIG-----------YLRKAVELFGMMP 226
K SV L +VL + C++IG LR + G +P
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVL-SACARIGALSCGKEIHAHALRTGLGFDGFLP 535
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D ++R G ++ A F EK V SW ++ G++Q G+ A+ +F +
Sbjct: 536 N-------ALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHK 587
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+++ V ++ T S L AC++ G + G+ Y + A
Sbjct: 588 MIESDVNPDEITFTSLLCACSRSGMVTDGLE---YFESMEHKFHIA-------------- 630
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+L + +++ L GR E A ++ KKM +PD ++ A+L A
Sbjct: 631 -------------PNLKHYASVVDLLGRAGRLEDAYEFIKKM---PIDPDPAIWGALLNA 674
Query: 407 CWYSGQVKLALNFFDSMRFDYFIE---PSVKHHTVVVNLLSRVGQVDK 451
C V+L + + E SV ++ ++ NL + G+ D+
Sbjct: 675 CRIYQNVELG-----ELAAQHIFEMDTKSVGYYILLCNLYADSGKWDE 717
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 244/496 (49%), Gaps = 46/496 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS--IFDHFTPK 92
+SL+ + + + QI + I +F ++++L+ SL D+A S +F
Sbjct: 32 LSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYY-SLSHDHDFAFSRTLFFQIHKP 90
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+ +N + R + +S I+ + MLR P+ ++PFV K+ A LSLL GR +H
Sbjct: 91 NVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIH 150
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING---- 208
+K GV D FV+ L + G A VFD P + V+ WN +I+G
Sbjct: 151 SSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRD--VVSWNSMISGYLQS 208
Query: 209 --------------------------------CSKIGYLRKAVELFGMMPKK----NVAS 232
C ++G L ++ G+ +V
Sbjct: 209 HRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFV 268
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
SLID + + G ++ A ++F+++P + V WT+MI G++Q+ ++A+ +F +M G
Sbjct: 269 GSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGF 328
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
A+ T+ LSAC GAL G +H Y N + AL+ MY+KCG+I+ A
Sbjct: 329 AADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALE 388
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACWYSG 411
+F + D+ +W+A+I GLA++G ++A+ F +M M S P+ FL +L AC + G
Sbjct: 389 IFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGG 448
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V L +F++M Y + P ++H+ +V+LL R + +A FI +P PD VIW +L
Sbjct: 449 FVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSL 508
Query: 472 FCACRTHKDTKIAKIA 487
ACR H + ++A+ A
Sbjct: 509 LFACRNHGNIELAEFA 524
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 148/515 (28%), Positives = 251/515 (48%), Gaps = 73/515 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISS---------ASLHKSI--DYALSIFDHFTPKN 93
++ QIHA++I +S +TT+++ + A + + +Y F H ++
Sbjct: 4 RRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVED 63
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
++N +I+ + + + F ML V ++ + V K+ + L + G +H
Sbjct: 64 PFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHG 123
Query: 154 LIVKSGVEYD-----------------AFVRV--------------HLADMYVQLGKTRG 182
+ K+G+ D F R + D YV+ G
Sbjct: 124 FLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGS 183
Query: 183 AFKVFDETPEKNKS------------------------------ESVLLWNVLINGCSKI 212
A ++FD P++ K+ + ++ WN LI+G K
Sbjct: 184 ARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKH 243
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + A +LF +MP+++V +W ++IDG+ + G + KA LF+QMP + VV++ +M+ G+
Sbjct: 244 GRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYV 303
Query: 273 QNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
QN +AL +F M D+ + ++ T+V LSA A++G L + ++ YI F L G
Sbjct: 304 QNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGG 363
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+G AL+DM++KCG+I+ A VF K K + W AMI GLAIHG E A ++
Sbjct: 364 KLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERC 423
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
+PD F+ +L AC +SG VK L F+ MR + IEP ++H+ +V++LSR G ++
Sbjct: 424 SIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIEL 483
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
A + I MP P+ VIW ACR K+ +I ++
Sbjct: 484 AKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGEL 518
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Query: 1 MKGHVFNRL-TTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V N+ A+ N+ K SH + T ++S I + ++ I+ +
Sbjct: 299 MAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKS 358
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
++ LI S SI A+S+F+ K++ +N +I GLA + H + +
Sbjct: 359 FPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLM 418
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+ R S++P+ +T+ V + + L+ G
Sbjct: 419 QIERCSIKPDDITFIGVLNACSHSGLVKEG 448
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 216/424 (50%), Gaps = 51/424 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++ I A +F+ KN+ +N +I G A+N S + F M
Sbjct: 134 TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM------ 187
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P R +V S + + M Q G+ A ++
Sbjct: 188 PER--------NVVSWNTV-------------------------MSMLAQCGRIEEARRL 214
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD PE++ V+ W +I G L +A++LF MP++++ SW ++I G ++ GDL
Sbjct: 215 FDRMPERD----VISWTAMI-----AGLLDEALDLFERMPERDLPSWNTMITGLIQNGDL 265
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSA 305
++A +LF +MP+K V+SWT MI G Q GE+E+AL +F +ML G + N T VS L A
Sbjct: 266 RRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGA 325
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF--GETKEKDLL 363
C+ + L G +VH IS + + +AL++MY+KCG + A +F G T ++DL+
Sbjct: 326 CSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLV 385
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W +I A HG ++AI +FK+M SG +PD ++ +L+AC ++G V+ L +FD +
Sbjct: 386 SWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDEL 445
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
D I H+ +V+L R G++ +A FI ++ P +WGAL C H + KI
Sbjct: 446 VKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKI 505
Query: 484 AKIA 487
K A
Sbjct: 506 GKQA 509
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 177/384 (46%), Gaps = 64/384 (16%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-PKKNVASWVSL 236
G+ A ++FDE E + V+ W +I+G K G + +A LF + KKNV +W ++
Sbjct: 81 GRIMEARRLFDEMREPD----VITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAM 136
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ G++R + A +LF +MP K VVSW MI+G++QNG + A+ +F +M + V + +
Sbjct: 137 VGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN 196
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGAIGTALVDMYAKC------- 344
TV+S L+ C G +E R+ + + D + G + AL D++ +
Sbjct: 197 -TVMSMLAQC---GRIEEARRLFDRMPERDVISWTAMIAGLLDEAL-DLFERMPERDLPS 251
Query: 345 -----------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-G 392
G++ A +F E +K++++WT MI G G E+A++ F +M+ + G
Sbjct: 252 WNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNG 311
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV-----VVNLLSRVG 447
+P+ F+++L AC S L + + I +V + ++N+ S+ G
Sbjct: 312 AKPNQGTFVSVLGAC--SNLAGLG----EGQQVHQIISKTVYQDSTFVVSALINMYSKCG 365
Query: 448 QVDKALN-FINKMPETPDFVIWGALFCACRTH------------------KDTKIAKIAL 488
++ A F + M D V W + A H K + + L
Sbjct: 366 ELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGL 425
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQK 512
S+CS + + + Y ++ +
Sbjct: 426 LSACSHAGLVEEGLKYFDELVKDR 449
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 27/295 (9%)
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+KI RK + G NVA +I + G + +A LF++M E V++WT +I+
Sbjct: 52 AKISIPRKDFTVDG-----NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVIS 106
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+ + G E+A + F +DA + N T + + + + ++ N + +
Sbjct: 107 GYIKCGMIEEARRL-FDRVDA--KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV-- 161
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
++D YA+ G I++A +F + E+++++W ++ LA GR E+A + F +M
Sbjct: 162 --VSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM- 218
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
E D + A++ +G + AL+ F+ M E + ++ L + G +
Sbjct: 219 ---PERDVISWTAMI-----AGLLDEALDLFERMP-----ERDLPSWNTMITGLIQNGDL 265
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
+A N+MP+ + + W + C +++ A S N + P ++
Sbjct: 266 RRARKLFNEMPKK-NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTF 319
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/404 (20%), Positives = 161/404 (39%), Gaps = 80/404 (19%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSR 64
+N + + +A I+ + + + + E +IS + + + ++ +L + +
Sbjct: 195 WNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNT 254
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T LI + L + A +F+ KN+ + +I G + + + F ML +
Sbjct: 255 MITGLIQNGDLRR----ARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTN 310
Query: 125 -VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+PN+ T+ V + ++L+ L G+ +H +I K+ + FV L +MY + G+ A
Sbjct: 311 GAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 370
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
K+FD+ GM ++++ SW +I +
Sbjct: 371 RKMFDD---------------------------------GMTSQRDLVSWNGIIAAYAHH 397
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G K+A F++M + +G + +D T V L
Sbjct: 398 GYGKEAINFFKEMRK-------------------------------SGFKPDDVTYVGLL 426
Query: 304 SACAKVGALEAGVRVHN-YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG-----ET 357
SAC+ G +E G++ + + ++ LVD+ + G ++ A FG ET
Sbjct: 427 SACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEA---FGFIERLET 483
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
K + W A++ G +H + Q KK++ E GT L
Sbjct: 484 KPSARV-WGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLL 526
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 204/382 (53%), Gaps = 12/382 (3%)
Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
++ F + L +P+ + ++V L LG+ +H I++S + YD +V L DM
Sbjct: 3 LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----N 229
YV+ A V KN V WN LI+G S G +AV+L M ++ +
Sbjct: 63 YVKNDCLEKAQAVLHRAKNKN----VCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPD 118
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFF 285
+ +W L+ G+ +G + +A + ++ G VVSWTA+I+G SQN + AL +F
Sbjct: 119 LVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFS 178
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QM V+ N T+ S L ACA L+ G +H + F + TAL+DMY++ G
Sbjct: 179 QMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAG 238
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
++ A VF + +EK L W M+ G AIH E+ + + KM PD F A+L+
Sbjct: 239 KLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLS 298
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC SG V +FDSM+ DY I P+++H+ +V+LL + G +D+A +FI MP PD
Sbjct: 299 ACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDA 358
Query: 466 VIWGALFCACRTHKDTKIAKIA 487
IWGAL +C+ HK+ K+A+IA
Sbjct: 359 SIWGALLASCKIHKNIKLAEIA 380
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 69 LISSASLHKSIDYALSIFDHF-----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
L+S S+ ID AL+I + TP N+ + LI G ++N + + F M
Sbjct: 125 LVSGYSMQGRIDEALTIINRIKSSGITP-NVVSWTALISGCSQNEKYMDALKIFSQMQAE 183
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+V+PN T + + A SLL G LHC +K G D +V L DMY + GK + A
Sbjct: 184 NVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVA 243
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG 239
+ VF++ EK ++ WN ++ G + + + + L+ M ++++ ++ +L+
Sbjct: 244 YNVFNKIQEK----TLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSA 299
Query: 240 FMRKGDLKKAGELFEQMPE 258
G + + + F+ M E
Sbjct: 300 CKNSGLVDEGWKYFDSMQE 318
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 151/514 (29%), Positives = 247/514 (48%), Gaps = 81/514 (15%)
Query: 50 IHAQIILHNLFASSRITTQLISS---------ASLHKSI--DYALSIFDHFTPKNLHIFN 98
I A++I +S +TT+++ + A + + +Y F H ++ ++N
Sbjct: 6 IXARLIKTGFIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWN 65
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+I+ + + + F ML V ++ + V K+ + L + G +H + K+
Sbjct: 66 AVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKT 125
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G+ D F++ L +Y++ G A ++FD P+++ + +N +I+G K G + A
Sbjct: 126 GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDS----VSYNSMIDGYVKCGLIGSA 181
Query: 219 VELFGMMPK----------------------------------KNVASWVSLIDGFMRKG 244
ELF +MPK K++ SW SLIDG+++ G
Sbjct: 182 RELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG 241
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM----------LDAGVRA 294
++ A +LF MP + VV+W MI+G+++ G KA +F QM + AG
Sbjct: 242 RMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQ 301
Query: 295 NDF----------------------TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
N + T+V LSA A++G L + +H YI F L G
Sbjct: 302 NKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGK 361
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+G AL+DMY+KCG+I+ A LVF + K + W AMI GLAIHG E A ++
Sbjct: 362 LGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRS 421
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+PD F+ IL AC +SG VK L F+ MR + IEP ++H+ +V++LSR G ++ A
Sbjct: 422 IKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELA 481
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
N I +MP P+ VIW AC HK+ + ++
Sbjct: 482 KNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEV 515
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRLT-TAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V N+ A+ +++ K SH + T ++S I + +H I+
Sbjct: 296 MAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQ 355
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
F ++ LI S SI A+ +F+ K++ +N +I GLA + +S +
Sbjct: 356 FFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLL 415
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYV 175
+ R S++P+ +T+ + + + L+ GL C + K +E + D+
Sbjct: 416 EIERRSIKPDDITFVGILNACSHSGLVK--EGLLCFELMRRKHKIEPRLQHYGCMVDILS 473
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G A + +E P E N ++W + CS
Sbjct: 474 RSGSIELAKNLIEEMPMEPND----VIWRTFLTACS 505
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/527 (27%), Positives = 252/527 (47%), Gaps = 80/527 (15%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-----IDYALSIFDHFTP 91
L+ S + + ++QIHAQI+ + S+ + +L+ S +DYALS+F H
Sbjct: 18 LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
N L+R + ++ +S ++ + R +R ++P + K+V+ LS L+LG +
Sbjct: 78 PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137
Query: 152 HCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H L K G + D F++ L MY G+ A +FD+ ++ V+ WN++I+G S
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRD----VVTWNIMIDGYS 193
Query: 211 KIGYLRKAVELF------GMMPKKNVASWV------------------------------ 234
+ + ++L+ G P + V
Sbjct: 194 QNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSH 253
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMP-------------------------------EKG 260
SL++ + G + A E+++Q+P EK
Sbjct: 254 IQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKD 313
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+V W+AMI+G++++ + +AL +F +M + + T++S +SACA VGAL +H
Sbjct: 314 LVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHT 373
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y N FG I AL+DMYAKCGN+ A VF K++++W++MI A+HG +
Sbjct: 374 YADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADS 433
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI F +M EP+G F+ +L AC ++G V+ FF SM ++ I P +H+ +V
Sbjct: 434 AIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMV 493
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L R + KA+ I MP P+ +IWG+L AC+ H + ++ + A
Sbjct: 494 DLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFA 540
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 153/377 (40%), Gaps = 74/377 (19%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+T ++++ + + R+++ Q+ ++ ++T ++S + + A IFD
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMV----VSTAMLSGYAKLGMVQDARFIFDRMV 310
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
K+L ++ +I G AE+ + F M R + P+++T V + A++ L +
Sbjct: 311 EKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKW 370
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H K+G G+T + + N LI+ +
Sbjct: 371 IHTYADKNG-----------------FGRT------------------LPINNALIDMYA 395
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G L KA E+F MP+KNV SW S+I+ F GD
Sbjct: 396 KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGD------------------------- 430
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR-VHNYISCNDFGL 329
A+ A+A+F +M + + N T + L AC+ G +E G + + I+ +
Sbjct: 431 ------ADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISP 484
Query: 330 KGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ +VD+Y + ++ +A L+ +++ W +++ HG E + F
Sbjct: 485 QREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIE--LGEFAAT 542
Query: 389 MYSGTEPDGTVFLAILT 405
EPD L +L+
Sbjct: 543 RLLELEPDHDGALVVLS 559
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 242/503 (48%), Gaps = 68/503 (13%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+I S + S+ AL +F ++ +N +I L+++ ++ F+ M RPN
Sbjct: 186 MIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPN 245
Query: 129 RLTYPFVSKSVASLSLLSLGRGLH--------CLIVKSG--------------------- 159
+TY V + S+ L G LH CL V +G
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFD 305
Query: 160 --VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE------------------------- 192
E++A L Q G A +F++ E
Sbjct: 306 GLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISI 365
Query: 193 ----------KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
+ SV + N L+ +K G + KA F +MP +++ SW ++I F +
Sbjct: 366 GEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQ 425
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
GD++KA E F++MPE+ V+SW +M+ + Q G E+ L ++ QML GV+ + T ++
Sbjct: 426 AGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTS 485
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+SACA + L G ++ F ++ ++V MY++CG IE A +F K+L
Sbjct: 486 ISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNL 545
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W AM+ G A +G+ + I+ F+KM+ G PD ++++L+ C +SG V +F S
Sbjct: 546 VSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLS 605
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M D+ I P +H +V+LL R GQ+++A N IN+MP P+ IWGAL ACR H +TK
Sbjct: 606 MTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTK 665
Query: 483 IAKIALQSSCSLNLSIPQAMSYC 505
+A++A+++ L+ P SYC
Sbjct: 666 LAELAVKNLLELDAEGPG--SYC 686
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 190/447 (42%), Gaps = 46/447 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HAQ+I L +S + L++ S I A +F N++ +N +I G A++
Sbjct: 24 RKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADS 83
Query: 108 SHFQSCISHFVFML-RLSVRPNRLTYPFVS--------KSVASLSLLSLGRGLHCLIVKS 158
+ F M R SV N + + K+ SL L L LH K
Sbjct: 84 GQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKF 143
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
D V + DMY++ G A KVF TP +
Sbjct: 144 DFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPS------------------------ 179
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
LF W S+I G+ + G +KKA ELF +MPE+ VSW MI+ SQ+G
Sbjct: 180 --LF---------CWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGA 228
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+ L F +M + G R N T S LSAC + LE G +H I + L G L+
Sbjct: 229 ETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLI 288
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG +E+A VF E + ++WT++I G+A G E+A+ F +M D
Sbjct: 289 DMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQF 348
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
+L C + + + ++ SV +V + ++ G V KA +
Sbjct: 349 TLATVLGVCLSQKDISIGEQ-LHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFEL 407
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAK 485
MP D + W A+ A D + A+
Sbjct: 408 MP-IRDIISWTAMITAFSQAGDVEKAR 433
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 35/312 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I++ S ++ A FD +N+ +N ++ + +++ + ++ MLR V+
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ +T+ + A L++L LG + K G + V + MY + G+ A K+
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKM 536
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVA---SWVSLIDGFMR 242
F KN ++ WN ++ G ++ G RK +E+F M+ NV S+VS++ G
Sbjct: 537 FSSIVMKN----LVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSH 592
Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + + F M + +S + M++ + G+ E+A + QM F
Sbjct: 593 SGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQM--------PF 644
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-----AIGTA----LVDMYAKCGNIE 348
+A+ GAL A R+H + +K A G L ++Y++ G I+
Sbjct: 645 KPNAAI-----WGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQ 699
Query: 349 AASLVFGETKEK 360
+ V ++K
Sbjct: 700 GVTNVRKLMRDK 711
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 38/251 (15%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
QI AQ ++ + +++ S I+ A +F KNL +N ++ G A+N
Sbjct: 500 QILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNG 559
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ I F ML + P++++Y + V SG + FV
Sbjct: 560 QGRKVIEIFEKMLNIGNVPDQISY---------------------VSVLSGCSHSGFV-- 596
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-K 227
+ G + T + S + +++ + G L +A L MP K
Sbjct: 597 -----------SEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFK 645
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMF 284
N A W +L+ G+ K A + + E +G S+ + N +S++G+ + +
Sbjct: 646 PNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVR 705
Query: 285 FQMLDAGVRAN 295
M D GVR N
Sbjct: 706 KLMRDKGVRKN 716
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 182/299 (60%), Gaps = 1/299 (0%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ +I SK G ++KA +F M KN +W ++IDG+MR G + A ++F++MPE
Sbjct: 109 VMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPE 168
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF G E+ALA F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 169 RDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWV 228
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 229 HRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNA 288
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM +PD F LTAC + G V+ L +F M DY I P ++H+
Sbjct: 289 HESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGC 348
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNL 496
+V+L SR G+++ AL + MP P+ V+ G+L ACR H +T +A+ ++ LN+
Sbjct: 349 LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNV 407
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 46/261 (17%)
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV- 309
+ Q + VSWT+ I ++NG +A F M AGV N T ++ LS C
Sbjct: 26 QRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFP 85
Query: 310 -GALEAGVRVHNYISCNDFGLKG---AIGTALVDMY--------AKC------------- 344
G+ G +H Y +C GL +GTA++ MY A+C
Sbjct: 86 SGSEALGDLLHGY-ACK-LGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTW 143
Query: 345 ----------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
G ++ A+ +F + E+DL++WTAMI G G +E+A+ +F++M SG +
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVK 203
Query: 395 PDGTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
PD +A L AC G + L + S F + +V+ +++L R G V+
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVMSQDF----KNNVRVSNSLIDLYCRCGCVEF 259
Query: 452 ALNFINKMPETPDFVIWGALF 472
A +KM E V W ++
Sbjct: 260 ARQVFDKM-EKRTVVSWNSVI 279
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 101/274 (36%), Gaps = 69/274 (25%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD ++L + +I G + ++ F M V+P+ + +
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNA 215
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G +H ++ + + V L D+Y + G A +VFD+
Sbjct: 216 CTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDK--------- 266
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
M K+ V SW S+I GF G+ ++ F +M E
Sbjct: 267 --------------------------MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ + + T AL+AC+ VG +E G+R
Sbjct: 301 E-------------------------------RFKPDAVTFTGALTACSHVGLVEEGLRY 329
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
I +D+ + I LVD+Y++ G +E A
Sbjct: 330 FQ-IMISDYRISPRIEHYGCLVDLYSRAGRLEDA 362
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 262/498 (52%), Gaps = 24/498 (4%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ L
Sbjct: 224 MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGL 283
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA IFD K++ +N+LI G + Q + ++
Sbjct: 284 ELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQ----QGLVDDAMY 339
Query: 120 MLRL----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
M +L ++R + +T + + A L+LG+ + C ++ E + + DMY
Sbjct: 340 MCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYA 399
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVA 231
+ G A KVF+ T EK+ ++LWN L+ + G +A++LF M N+
Sbjct: 400 KCGSIVDAKKVFESTAEKD----LILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNII 455
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQM 287
+W S+I F+R G + +A E+F QM G+ +SWT M+NG+ QNG +E+A+ +M
Sbjct: 456 TWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKM 515
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG 345
++G+R N FT+ ALSAC + +L G +H YI N F ++ T+LVD+YAKCG
Sbjct: 516 QESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRN-FQHSSSVSFETSLVDLYAKCG 574
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I A VFG +L AMI A++G +++I ++++ +PD F ++L
Sbjct: 575 DINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPDNITFTSLLY 634
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G + A+N F M + ++P ++H+ ++V++L+ G+ +KAL I +MP PD
Sbjct: 635 ACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILASSGETNKALELIEEMPYKPDA 694
Query: 466 VIWGALFCACRTHKDTKI 483
+ +L +C T++
Sbjct: 695 RMIQSLVASCNKQHKTEL 712
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 125/475 (26%), Positives = 218/475 (45%), Gaps = 50/475 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 68 QQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKC 127
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML V P+ P V K+ +L GRG+H ++K+G+ F
Sbjct: 128 RIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVF 187
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A VFDE PE+N V+ WN L+ G + G +A+ L M
Sbjct: 188 VASSLADMYGKCGVLDDARMVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLLSDM 243
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ + + +++++G + + G +
Sbjct: 244 RKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI 303
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F+++ K +V+W +I+G+ Q G + A+ M M +R + T+ + +SA
Sbjct: 304 EYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAA 363
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L G V Y + F + + ++ VDMYAKCG+I A VF T EKDL+ W
Sbjct: 364 ARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWN 423
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F M+ P+ + +I+ + +GQV A F M+
Sbjct: 424 TLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQ-S 482
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCACRTH 478
I P++ T ++N + G ++A+ F+ KM E+ P+ AC TH
Sbjct: 483 SGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSAC-TH 536
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 158/386 (40%), Gaps = 50/386 (12%)
Query: 145 LSLGRGLHCLIVKSGVEY--DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L G+ +H I+K+G Y + ++ L Y + A +F +N V W
Sbjct: 64 LCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRN----VFSW 119
Query: 203 NVLINGCSKIGYLRKA----VELF--GMMPKKNVA------------SWV---------- 234
+I +IG A VE+ G++P V SW
Sbjct: 120 AAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLK 179
Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
SL D + + G L A +F+++PE+ VV+W A++ G+ QNG E+A+ +
Sbjct: 180 AGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRL 239
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
M G+ TV + LSA A +G +E G + H N L +GT++++ Y K
Sbjct: 240 LSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCK 299
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
G IE A ++F KD++TW +I G G + A+ K M D +
Sbjct: 300 VGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTL 359
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
++A + + L + E + + V++ ++ G + A E
Sbjct: 360 MSAAARTQNLNLGKE-VQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAE-K 417
Query: 464 DFVIWGALFCACRTHKDTKIAKIALQ 489
D ++W L A + D+ ++ AL+
Sbjct: 418 DLILWNTLLAA---YADSGLSGEALK 440
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 22/308 (7%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------KNVA 231
G+ R A ++ E +N ++ ++ GC L ++ + K +N
Sbjct: 27 GEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGAFYARNEY 86
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
L+ + + L+ A +LF ++ + V SW A+I + G E AL F +ML+ G
Sbjct: 87 IETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENG 146
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEA 349
V +++ V + AC + G VH Y+ GL + ++L DMY KCG ++
Sbjct: 147 VLPDNYVVPNVCKACGALHWSWFGRGVHGYVL--KAGLHDCVFVASSLADMYGKCGVLDD 204
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A +VF E E++++ W A++ G +G E+AI+ M G EP L+A
Sbjct: 205 ARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASAN 264
Query: 410 SGQVKL-----ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
G ++ A+ + + D + T ++N +VG ++ A +++ D
Sbjct: 265 MGGIEEGKQSHAIAIVNGLELDNIL------GTSILNFYCKVGLIEYAEMIFDRII-GKD 317
Query: 465 FVIWGALF 472
V W L
Sbjct: 318 IVTWNLLI 325
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 257/498 (51%), Gaps = 19/498 (3%)
Query: 1 MKGHVFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI + +++ +T + +S + ++ +Q HA I++ L
Sbjct: 241 MVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGL 300
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA IFD K++ +N+LI G + + I
Sbjct: 301 ELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQL 360
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M R ++ + +T + + A L LG+ + C ++ G D + +MY + G
Sbjct: 361 MRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGS 420
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASW 233
A KVF+ T EK+ ++LWN L+ ++ G +A+ LF G+ P NV +W
Sbjct: 421 IVDAKKVFNSTVEKD----LILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPP--NVITW 474
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLD 289
S+I +R G + +A ++F QM G+ +SWT M+NG QNG +E+A+ +M +
Sbjct: 475 NSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQE 534
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIE 348
+G+R N F++ ALSACA + +L G +H YI N +I T+LVDMYAKCG+I
Sbjct: 535 SGLRLNVFSITVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDIS 594
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTAC 407
A VFG +L + AMI A++G ++A ++ + G EPD +L+AC
Sbjct: 595 KAERVFGSKLYSELPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSAC 654
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G + A++ F M + ++P ++H+ ++V+LL+ G+ +KAL I +MP PD +
Sbjct: 655 HHAGDINQAIHIFTDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRLIEEMPYKPDARM 714
Query: 468 WGALFCACRTHKDTKIAK 485
+L +C +++ +
Sbjct: 715 IQSLLASCNKQHKSELVE 732
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/456 (26%), Positives = 214/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 85 QQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRC 144
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H + K+G+ F
Sbjct: 145 RIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 204
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE P++ +V+ WN L+ G + G ++A+ L M
Sbjct: 205 VASSLADMYGKCGLLDDARKVFDEIPDR----TVVAWNALMVGYVQNGMNQEAIRLLSAM 260
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
+ + + +++++G + + G +
Sbjct: 261 RNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI 320
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M + + T+ S +SA
Sbjct: 321 EYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAA 380
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + V+MYAKCG+I A VF T EKDL+ W
Sbjct: 381 ARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWN 440
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M G P+ + +++ + +GQV A + F M+
Sbjct: 441 TLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQ-S 499
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ ++ KM E+
Sbjct: 500 SGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQES 535
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 145 RIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 204
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++P++ VV+W A++ G+ QNG ++A+ + M + G
Sbjct: 205 VASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEG 264
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ TV + LSA A +G +E G + H N L +GT++++ Y K G IE A
Sbjct: 265 IEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 324
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
++F EKD++TW +I G G E AI + M D ++++A +
Sbjct: 325 MIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTH 384
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+KL F+ V T V + ++ G + A N E D ++W L
Sbjct: 385 NLKLGKEVQCYCIRHGFVSDIVLAST-AVEMYAKCGSIVDAKKVFNSTVE-KDLILWNTL 442
Query: 472 FCA 474
A
Sbjct: 443 LAA 445
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 155/530 (29%), Positives = 256/530 (48%), Gaps = 77/530 (14%)
Query: 28 NITETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
N T+ +L+ + +S K Q +Q+HAQI+ +L + S ++T L ++L+ D +L
Sbjct: 2 NTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHD-SLL 60
Query: 85 IFDHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF+ +P + +IR + F +S F+ ML P+ +P V KS +
Sbjct: 61 IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---------------GKTRGAF---- 184
L G +H I++ G+ +D + L +MY + GKT +
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180
Query: 185 ----------KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV--------------- 219
KVF+ P+++ ++ WN +I+G ++ G A+
Sbjct: 181 KESYYLGSLRKVFEMMPKRD----IVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 236
Query: 220 -----------ELFGMMPKKNVASWV-------------SLIDGFMRKGDLKKAGELFEQ 255
E ++ K + + SLID + + + + +F
Sbjct: 237 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 296
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+P+ +SW ++I G QNG ++ L F QML A ++ N + S + ACA + L G
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
++H YI + F I +ALVDMYAKCGNI A +F + + D+++WTAMI G A+H
Sbjct: 357 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 416
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G AI FK+M G +P+ F+A+LTAC ++G V A +F+SM DY I P ++H
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ V +LL RVG++++A FI+ M P +W L ACR HK+ ++A+
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAE 526
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 132/315 (41%), Gaps = 51/315 (16%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAE 106
++IH I + A I + LI + +D + +F + P++ I +N +I G +
Sbjct: 256 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF-YMLPQHDGISWNSIIAGCVQ 314
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N F + F ML ++PN +++ + + A L+ L LG+ LH I++S + + F+
Sbjct: 315 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFI 374
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L DMY + G R A +FD+ +EL+ M+
Sbjct: 375 ASALVDMYAKCGNIRTARWIFDK-----------------------------MELYDMV- 404
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALA 282
SW ++I G+ G A LF++M +GV V++ A++ S G ++A
Sbjct: 405 -----SWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 459
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGV----RVHNYISCNDFGLKGAIGTALV 338
F M D+ ++ L A V L V + +IS G++ + L+
Sbjct: 460 YFNSM------TQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLL 513
Query: 339 DMYAKCGNIEAASLV 353
NIE A V
Sbjct: 514 AACRVHKNIELAEKV 528
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 256/500 (51%), Gaps = 28/500 (5%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ L
Sbjct: 246 MVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGL 305
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA +FD K++ +N++I G + Q + + ++
Sbjct: 306 ELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQ----QGLVENAIY 361
Query: 120 MLRLSVRPNRLTYPFVS-----KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M +L +R +L Y V+ + A L LG+ + C ++ E D + + DMY
Sbjct: 362 MCQL-MRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMY 420
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK 228
+ G A KVFD T EK+ ++LWN L+ ++ G + + LF G+ P
Sbjct: 421 AKCGSIVDAKKVFDSTAEKD----LILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPP-- 474
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMF 284
NV +W +I +R G++ +A ++F QM G+ +SWT M+NG QNG +E+A+
Sbjct: 475 NVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEEAILFL 534
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAK 343
+M ++G+R N ++ ALSACA + +L G +H YI N +I T+LVDMYAK
Sbjct: 535 RKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAK 594
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG+I A VFG +L + AMI A++G ++AI ++ + G +PD +
Sbjct: 595 CGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNV 654
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC ++G A M + + P ++H+ ++V+LL+ GQ DKAL I +MP P
Sbjct: 655 LSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVDLLASAGQTDKALRLIEEMPYKP 714
Query: 464 DFVIWGALFCACRTHKDTKI 483
D + +L +C +++
Sbjct: 715 DARMIQSLVASCNKQPKSEL 734
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 218/472 (46%), Gaps = 49/472 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + ++D A +F +N+ + +I
Sbjct: 90 KQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKC 149
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H +VK+G+E F
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ LF M
Sbjct: 210 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLFSDM 265
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K+ V SL++ + + G +
Sbjct: 266 RKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLI 325
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M +K VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 326 EYAEMVFDRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAA 385
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + ++DMYAKCG+I A VF T EKDL+ W
Sbjct: 386 ARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWN 445
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G + ++ F M G P+ + I+ + +G+V A + F M+
Sbjct: 446 TLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQ-S 504
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
I P++ T ++N + + G ++A+ F+ KM E+ P+ V AC
Sbjct: 505 SGIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSAC 556
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 244/470 (51%), Gaps = 22/470 (4%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTP 91
+I +H + K+L Q A I+ + I T+LI+ +SL S+ +A ++F +
Sbjct: 2 MIPKLHRLSCIKELEQAQAFIVKAGFYNHIPIITKLIAFSSLSPLGSLPHACALFQETSM 61
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA-SLSLLSL--- 147
+ I N +IR + + + M R+ V + TY FV ++ A ++ +
Sbjct: 62 DDSFICNTMIRAYSNTVFPLKALLIYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQ 121
Query: 148 ----------GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
G +H I+K G + D V+ L +Y G A +F+E K
Sbjct: 122 CFGHHIISRKGSEIHARILKLGFDQDHHVQNSLLLVYSGSGLVGFARLIFNEMTVK---- 177
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ + WN++++ +++ + A L MP+ N SW +L+ ++R +L A ++FE+MP
Sbjct: 178 TAVSWNIMMSAYNRVHDYKSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMP 237
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
E+ VVSW ++I+G+ + + AL +F M +RA + T +S L ACA++GALE G +
Sbjct: 238 ERDVVSWNSIISGYVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKK 297
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
+H+ + + ++G +G A+VDMYAKCG + A VF E + K + W AMI GLA+HG
Sbjct: 298 IHDSLKEKHYRIEGYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGH 357
Query: 378 YEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
E+A++ F M + P+ F+A+L AC + G + +FF M Y I P +KH
Sbjct: 358 CERALEMFDSMKAEDGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKH 417
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +++LLSR G +++A I P + V+W L CR H+ ++ +
Sbjct: 418 YGCMIDLLSRWGFLEEAYVMIKTCPFSSCSVLWRTLLGGCRLHRHVELGE 467
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 252/517 (48%), Gaps = 73/517 (14%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISS---------ASLHKSI--DYALSIFDHFTP 91
S+ ++HA++I L + +TT+++ + A + + +Y L F
Sbjct: 4 SSDDXNKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEG 63
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
++ +++N +I+ + + + F M+ V ++ + V K+ + L L G +
Sbjct: 64 EDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQI 123
Query: 152 HCLIVKSGVEYDAFVRVHLA-------------------------------DMYVQLGKT 180
H + K+G+ D F++ L D YV+ G
Sbjct: 124 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLM 183
Query: 181 RGAFKVFDETPEKNKS------------------------------ESVLLWNVLINGCS 210
+ A K+FD P + K+ + ++ WN +INGC
Sbjct: 184 KSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCV 243
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G + A LF +MP+++V +W ++IDG+ + G + A LF+QM ++ VV+ +M+ G
Sbjct: 244 KHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAG 303
Query: 271 FSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
+ QN +AL +F M D+ + ++ T+V LSA A++G L + +H YI F L
Sbjct: 304 YVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPL 363
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
G +G AL+DM++KCG+I+ A VF + K + W AMI GLAIHG E A ++
Sbjct: 364 GGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIE 423
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
+PD F+ +L AC +SG VK L F+ MR + IEP ++H+ +V++LSR G +
Sbjct: 424 RCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSI 483
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ A + I MP P+ VIW + AC TH++ + ++
Sbjct: 484 ELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGEL 520
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRLTTAIAPTTNI--KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V N+ N K SH + T ++S I + +H I+
Sbjct: 301 MAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKR 360
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
++ LI S SI +A+S+F+ K++ +N +I GLA + + +
Sbjct: 361 FPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLM 420
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYV 175
+ R S++P+ +T+ V + + L+ GL C + K +E L D+
Sbjct: 421 QIERCSIQPDXITFIGVLNACSHSGLVK--EGLLCFELMRRKHXIEPRLQHYGCLVDVLS 478
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G A + ++ P E N ++W ++ CS
Sbjct: 479 RSGSIELAKHLIEDMPMEPND----VIWRSFLSACS 510
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 259/500 (51%), Gaps = 28/500 (5%)
Query: 1 MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ +
Sbjct: 246 MVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGM 305
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA +FD K++ +N++I G + Q + ++
Sbjct: 306 ELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQ----QGLVEDAIY 361
Query: 120 MLRLSVRPNRLTYPFVS-----KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M +L +R +L Y V+ + A L LG+ + C ++ E D + + DMY
Sbjct: 362 MCQL-MRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMY 420
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK 228
+ G A KVFD T EK+ ++LWN L+ ++ G +A+ LF G+ P
Sbjct: 421 AKCGSIVDAKKVFDSTVEKD----LILWNTLLAAYAESGLSGEALRLFYGMQLEGVPP-- 474
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV----SWTAMINGFSQNGEAEKALAMF 284
NV +W +I +R G + +A ++F QM G++ SWT M+NG QNG +E+A+
Sbjct: 475 NVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFL 534
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAK 343
+M ++G+R N F++ ALSACA + +L G +H YI N +I T+LVDMYAK
Sbjct: 535 RKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAK 594
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG+I A VFG +L AMI A++G ++AI ++ + G +PD +
Sbjct: 595 CGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNV 654
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC ++G + A+ F + ++P ++H+ ++V+LL+ G+ +KAL I +MP P
Sbjct: 655 LSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKP 714
Query: 464 DFVIWGALFCACRTHKDTKI 483
D + +L +C + T++
Sbjct: 715 DARMIQSLVASCNKQRKTEL 734
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 90 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H +VKSG+E F
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE P++N + WN L+ G + G +A+ LF M
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRN----AVAWNALMVGYVQNGKNEEAIRLFSDM 265
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K+ V SL++ + + G +
Sbjct: 266 RKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI 325
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 326 EYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAA 385
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + ++DMYAKCG+I A VF T EKDL+ W
Sbjct: 386 ARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWN 445
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F M G P+ + I+ + +GQV A + F M+
Sbjct: 446 TLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSS 505
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N + + G ++A+ F+ KM E+
Sbjct: 506 GII-PNLISWTTMMNGMVQNGCSEEAILFLRKMQES 540
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++P++ V+W A++ G+ QNG+ E+A+ +F M G
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQG 269
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V TV + LSA A +G +E G + H N L +GT+L++ Y K G IE A
Sbjct: 270 VEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+VF EKD++TW +I G G E AI + M + D +++A +
Sbjct: 330 MVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 389
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+KL + E + + V+++ ++ G + A + E D ++W L
Sbjct: 390 NLKLGKE-VQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEK-DLILWNTL 447
Query: 472 FCA 474
A
Sbjct: 448 LAA 450
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/506 (28%), Positives = 236/506 (46%), Gaps = 44/506 (8%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH + + + + T L+ + + A +F ++L ++ +I L +
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + +S F M ++PNR+T + + A LSLL LG+ +HC VK+ ++ D
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L MY + G A F+ + S ++ WN LING ++IG A+++F
Sbjct: 469 TALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524
Query: 223 -----------GMMP-----------------------KKNVASWVSLIDGFMRKGDLKK 248
G++P + + +LID + + G L
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584
Query: 249 AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF + K V+W +I + QNG A++A++ F QM N T VS L A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ A G+ H I F +G +L+DMYAKCG ++ + +F E KD ++W A
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNA 704
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
M+ G A+HG ++AI F M S + D F+++L+AC ++G V+ F SM Y
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKY 764
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I+P ++H+ +V+LL R G D+ L FI MP PD +WGAL +CR H + K+ ++A
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKG 513
L L P + Q G
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSG 850
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 233/507 (45%), Gaps = 48/507 (9%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
H R T+IA + S S H L+ S L QIHAQII+ F
Sbjct: 5 HQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 63
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
T LI+ SL D A S+FD + ++N +IR + + + + M+
Sbjct: 64 HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+ P++ T+ FV K+ L G H I + G+E D F+ L DMY ++G + A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183
Query: 184 FKVFDETPEKNKSESVLLWNVLING-------CSKIGYLR---------KAVELFGMMP- 226
+VFD+ P+++ V+ WN +I G C + + R +V L + P
Sbjct: 184 REVFDKMPKRD----VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239
Query: 227 ------------------KKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+++ +S VS LID + + GD+ A +F+QM ++ VSW
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ G++ NG + L +F +M VR N + VSA A A+ LE G +H
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ T L+ MYAKCG E A +F + +DL+ W+A+I L G E+A+ F+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKL--ALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
+M +P+ ++IL AC +KL +++ F +++ D ++ + T +V++ +
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF-TVKAD--MDSDLSTGTALVSMYA 476
Query: 445 RVGQVDKALNFINKMPETPDFVIWGAL 471
+ G AL N+M + D V W +L
Sbjct: 477 KCGFFTAALTTFNRM-SSRDIVTWNSL 502
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 200/458 (43%), Gaps = 81/458 (17%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N +T I+ + K + IH + ++ + T L+S + AL
Sbjct: 427 KP-NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAAL 485
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASL 142
+ F+ + +++ +N LI G A+ + I F + LRLS + P+ T V + A L
Sbjct: 486 TTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF-YKLRLSAINPDAGTMVGVVPACALL 544
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ L G +H LIVK G E D V+ L DMY + G A +F++T + ++ + W
Sbjct: 545 NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT---DFTKDEVTW 601
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKN-------------VASWV--------------- 234
NV+I + G+ ++A+ F M +N A+++
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661
Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
SLID + + G L + +LF +M K VSW AM++G++ +G ++A+A+
Sbjct: 662 MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F M ++ V+ + + VS LSAC G +E G ++ + +S + + +K
Sbjct: 722 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMS-DKYHIK------------- 767
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
DL + M+ L G +++ + + K M EPD V+ A+
Sbjct: 768 ----------------PDLEHYACMVDLLGRAGLFDETLGFIKVM---PVEPDAGVWGAL 808
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
L +C VKL D + +EP H VV++
Sbjct: 809 LGSCRMHSNVKLGEVALDHL---VKLEPRNPAHFVVLS 843
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 140/492 (28%), Positives = 248/492 (50%), Gaps = 47/492 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++SL+ + ++ +H IL+ + ++ +++ +I+Y+ +FD+ ++
Sbjct: 165 VLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRD 224
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +N LI A+ + + M T+ V AS L LGR LH
Sbjct: 225 LVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHG 284
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
I+++G DA V L +Y++ GK AF++F+ + +K+ V+LW +I+G + G
Sbjct: 285 QILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKD----VVLWTAMISGLVQNG 340
Query: 214 YLRKAVELFGMMPK---------------------------------------KNVASWV 234
KA+ +F M K +VA+
Sbjct: 341 SADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQN 400
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL+ + + G L ++ +F+ M + +VSW AM+ G++QNG +AL +F +M
Sbjct: 401 SLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTP 460
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASL 352
+ T+VS L CA G L G +H+++ N GL+ I T+LVDMY KCG+++ A
Sbjct: 461 DSITIVSLLQGCASTGQLHLGKWIHSFVIRN--GLRPCILVDTSLVDMYCKCGDLDTAQR 518
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
F + DL++W+A+I G HG+ E A++++ K + SG +P+ +FL++L++C ++G
Sbjct: 519 CFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGL 578
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V+ LN ++SM D+ I P ++HH VV+LLSR G+V++A N K P + G +
Sbjct: 579 VEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIIL 638
Query: 473 CACRTHKDTKIA 484
ACR + + ++
Sbjct: 639 DACRANGNNELG 650
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 140/558 (25%), Positives = 251/558 (44%), Gaps = 66/558 (11%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
+A ++ +H PS+ T ++ N +H +I++ L + I + LI+
Sbjct: 46 LATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINF 105
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
+ D A +FD+ +N+ + +I + S F M R ++P+ +T
Sbjct: 106 YAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVT- 164
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V + +S L+ + LH + G D + + ++Y + G + K+FD
Sbjct: 165 --VLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDH 222
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM--------PKK-----NVAS------- 232
++ ++ WN LI+ ++IG + + + L M P+ +VA+
Sbjct: 223 RD----LVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKL 278
Query: 233 -------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
SLI +++ G + A +FE+ +K VV WTAMI+G Q
Sbjct: 279 GRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQ 338
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
NG A+KALA+F QML GV+ + T+ S ++ACA++G+ G + YI + L A
Sbjct: 339 NGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVAT 398
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+LV MYAKCG+++ +S+VF +DL++W AM+ G A +G +A+ F +M
Sbjct: 399 QNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQ 458
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD +++L C +GQ+ L + S + P + T +V++ + G +D A
Sbjct: 459 TPDSITIVSLLQGCASTGQLHLG-KWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQ 517
Query: 454 NFINKMPETPDFVIWGALFCACRTH------------------KDTKIAKIALQSSCSLN 495
N+MP + D V W A+ H K + +++ SSCS N
Sbjct: 518 RCFNQMP-SHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHN 576
Query: 496 LSIPQAMSYCQTFMQQKG 513
+ Q ++ ++ + G
Sbjct: 577 GLVEQGLNIYESMTKDFG 594
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 188/402 (46%), Gaps = 43/402 (10%)
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ +H Q ++ + ML+ V + T+P + K+ + L+L SLG LH I+ SG+ DA+
Sbjct: 39 QGAHHQ-VLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAY 97
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
+ L + Y + G A KVFD PE+N V+ W +I S+ G + +A LF M
Sbjct: 98 IASSLINFYAKFGFADVARKVFDYMPERN----VVPWTTIIGCYSRTGRVPEAFSLFDEM 153
Query: 226 PKKNVAS----------------------WVSLIDGFM--------------RKGDLKKA 249
++ + +++ GFM + G+++ +
Sbjct: 154 RRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYS 213
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+LF+ M + +VSW ++I+ ++Q G + L + M G A T S LS A
Sbjct: 214 RKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASR 273
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G L+ G +H I F L + T+L+ +Y K G I+ A +F + +KD++ WTAMI
Sbjct: 274 GELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMI 333
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GL +G ++A+ F++M+ G +P +++TAC G L + + +
Sbjct: 334 SGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYI-LRQEL 392
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V +V + ++ G +D++ + + M D V W A+
Sbjct: 393 PLDVATQNSLVTMYAKCGHLDQS-SIVFDMMNRRDLVSWNAM 433
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 7/213 (3%)
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
S A IN S G + LA + ML V ++ +T S L AC+ + G+ +H I
Sbjct: 28 SVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRI 87
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ L I ++L++ YAK G + A VF E++++ WT +I + GR +A
Sbjct: 88 LVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAF 147
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-LNFFDSMRFDYFIEPSVKHHTVVVN 441
F +M G +P L++L G +LA + Y + ++N
Sbjct: 148 SLFDEMRRQGIQPSSVTVLSLLF-----GVSELAHVQCLHGCAILYGFMSDINLSNSMLN 202
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ + G ++ + + M + D V W +L A
Sbjct: 203 VYGKCGNIEYSRKLFDYM-DHRDLVSWNSLISA 234
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 245/497 (49%), Gaps = 41/497 (8%)
Query: 5 VFNRLTTAIAPTTNIKSSH------KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
++N L +A + I+S + + ++ L+ + N Q++QIH Q I+
Sbjct: 34 IYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQVKQIHCQAIVTG 93
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
LF+ + LI + + A +F+ ++ FNV+I G A+ + F
Sbjct: 94 LFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFH 153
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
M+ L + P+ T + S L + G+ +H +
Sbjct: 154 EMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWM----------------------- 190
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
E + S +++L N L++ K + A+ FG + +K++ SW ++
Sbjct: 191 ----------ERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVA 240
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G + G+L++A F QMP + +VSW +++ G++ G+ + M+ V + T
Sbjct: 241 GCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVT 300
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
++S +SA + GAL+ G H ++ L +G+AL+DMY KCG+IE AS VF E
Sbjct: 301 MISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEIN 360
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+KD+ WT MI GLA HG +A++ F +M PD F+++L+AC +SG V +
Sbjct: 361 KKDVTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIK 419
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
F SM DY IEP V+H+ +V+LL+R G++ +A + I++MP P IWGA+ AC+
Sbjct: 420 VFSSMT-DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQ 478
Query: 479 KDTKIAKIALQSSCSLN 495
D ++A+IA + +L+
Sbjct: 479 GDVELAEIASRELLNLD 495
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/508 (30%), Positives = 246/508 (48%), Gaps = 65/508 (12%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL---------HKSIDYALS 84
I+SL+ + Q + HA I L + I T++I + L + +YA
Sbjct: 7 ILSLLPKCKTLLQFKTSHALI----LTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANL 62
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F N++IFN +I+G A++++ + + ML+ P+ T+PFV K+ + +
Sbjct: 63 LFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYD 122
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
G+ +H I+KSG E + +V L +MYV+ KVFD+ P+ N V+ W
Sbjct: 123 QVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWN----VVAWTC 178
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----------------------WV-------- 234
LING R+A+E+F M + V + WV
Sbjct: 179 LINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAG 238
Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
++++ + + G L A ELF +MPE+ +V+W MIN ++Q
Sbjct: 239 YDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYN 298
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+AL +FF ML G + T +S LS CA+ L G VH Y+ ++ A+ TAL+
Sbjct: 299 EALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALL 358
Query: 339 DMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPD 396
DMYAK G + +A +F + E KD++ WT+MI LAIHG +A+ F+ M S PD
Sbjct: 359 DMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPD 418
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
++ +L AC + G V+ A F+ M Y I P +H++ +V+LLSR G +A +
Sbjct: 419 HITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLM 478
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIA 484
M P+ IWGAL C+ H++ +A
Sbjct: 479 ETMSIRPNIAIWGALLNGCQIHENIPVA 506
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 254/494 (51%), Gaps = 16/494 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + + ++ +Q HA I++ L
Sbjct: 244 MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGL 303
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T ++ I+YA IFD K++ +N+LI G + + I H
Sbjct: 304 ELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAI-HMCQ 362
Query: 120 MLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
++RL +++ + +T + + A L LG+ + C ++ D + DMY G
Sbjct: 363 LMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCG 422
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWV 234
A KVFD K+ ++LWN L++ ++ G +A LF M N +W
Sbjct: 423 SIIDAKKVFDSVLAKD----LILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWN 478
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDA 290
+I F+R G + +A E+F QM G+ VSWT M+NG QNG +E+A+ +M ++
Sbjct: 479 LIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQES 538
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEA 349
G+R N F++ ALSAC+ + +L G VH YI N I T+LVDMYAKCG+I
Sbjct: 539 GLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINK 598
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A +VF DL + AMI A++G ++AI +++ +G +PD F ++L+AC +
Sbjct: 599 AEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPDNITFTSLLSACNH 658
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V A+ F M + I+P ++H+ ++V++L+ G+ DKAL I +MP D +
Sbjct: 659 AGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKALRLIEEMPYKSDARMIQ 718
Query: 470 ALFCACRTHKDTKI 483
+L +C T++
Sbjct: 719 SLVASCNMKHKTEL 732
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 210/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + + + + +F +N++ + +I
Sbjct: 88 KQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKC 147
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML+ + P+ P V K+ +L GRG+H +VKSG+ F
Sbjct: 148 RIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVF 207
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ L M
Sbjct: 208 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLLSDM 263
Query: 226 PKKNV-------------------------ASWVSLIDG--------------FMRKGDL 246
K+ + + +++++G + + G +
Sbjct: 264 RKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLI 323
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 324 EYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAA 383
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + VDMYA CG+I A VF KDL+ W
Sbjct: 384 ARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWN 443
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A + F +M P+ + I+ + +GQV A F M+
Sbjct: 444 TLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQ-S 502
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N L + G ++A+ F+ KM E+
Sbjct: 503 SGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQES 538
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 237/466 (50%), Gaps = 12/466 (2%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIIL-HNLFASSRITTQLISSASLHKSIDYALSIFD 87
+TE ++ + K L+++H++I++ NL + + +L+ + + Y IFD
Sbjct: 36 LTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFD 95
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
T KN+ FNV+IR N +Q + F M P+ TYP V K+ + L +
Sbjct: 96 EITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWV 155
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H +VK G++ + ++ L MY + A +V DE P ++ ++ WN ++
Sbjct: 156 GLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRD----MVSWNSMVA 211
Query: 208 GCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGV 261
G ++ G A++L M K + + SL+ ++ ++F ++ EK +
Sbjct: 212 GYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSL 271
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SW MI + N +A+ ++ QM GV + ++ S L AC + A G R+H Y
Sbjct: 272 ISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEY 331
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ + AL+DMYAKCG ++ A VF + +D+++WT+MI + G+ + A
Sbjct: 332 VERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDA 391
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ FKKM SG PD F+++L AC ++G V F+ M +Y I P ++H+ +V+
Sbjct: 392 VALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVD 450
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
LL R G++D+A + +MP P+ +WG+L ACR + IA +A
Sbjct: 451 LLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLA 496
>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
Length = 717
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/534 (27%), Positives = 257/534 (48%), Gaps = 50/534 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+ T T +IS + + Q+HA + + + + LIS S I+ + +F
Sbjct: 172 NSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVF 231
Query: 87 DHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ + +I NV++ ++N I F ML+ + P+ + V ++ L L
Sbjct: 232 EDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFS---VCSLLSVLDCL 288
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+LG+ +H +KSG+ D V L MY + G ++ +F E P K+ + W +
Sbjct: 289 NLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNA----CWASM 344
Query: 206 INGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------- 234
I+G ++ GYLR+A+ LF G P ++ + V
Sbjct: 345 ISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGI 404
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L++ + + G LK A ++++++PE VS +++I+G+SQ+G + +F
Sbjct: 405 DRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRD 464
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+ +G + + + S L A E G +VH YI+ + ++G++L+ MY+K G+
Sbjct: 465 MVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGS 524
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
IE F + DL+ WTA+I A HG+ +A+Q + M G +PD F+ +L+A
Sbjct: 525 IEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSA 584
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C + G V+ +SM DY IEP +H+ +V+ L R G++ +A NFIN P PD +
Sbjct: 585 CSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDAL 644
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+WG L AC+ + D ++ K+A + + L S A + + G+ W E
Sbjct: 645 VWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGE---WDE 695
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 198/440 (45%), Gaps = 55/440 (12%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ + LI + S + + A +F N++ +N +I G N ++ + F M
Sbjct: 9 VQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGF 68
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+P+ TY V + ASL L G+ + ++K G E D FV + D+Y + G A
Sbjct: 69 QKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAR 127
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------------------- 225
+VF + + SV+ W V+++G +K A+E+F M
Sbjct: 128 EVFS----RISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISAC 183
Query: 226 -------PKKNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPE---KGVV 262
V +WV +LI + GD+ + +FE + + + +V
Sbjct: 184 GRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV 243
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+ M+ FSQN + KA+ +F +ML G+ ++F+V S LS + L G +VH+Y
Sbjct: 244 N--VMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYT 298
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ L +G++L MY+KCG++E + +F E KD W +MI G +G +AI
Sbjct: 299 LKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAI 358
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVN 441
F +M+ GT PD + A+LT C + + ++R I+ + + +VN
Sbjct: 359 GLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAG--IDRGMPLGSALVN 416
Query: 442 LLSRVGQVDKALNFINKMPE 461
S+ G + A +++PE
Sbjct: 417 TYSKCGSLKLARKVYDRLPE 436
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 125/249 (50%), Gaps = 14/249 (5%)
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V S++D + + G + +A E+F ++ VVSWT M++G++++ +A AL +F +M
Sbjct: 105 EDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREM 164
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+GV N TV S +SAC + + +VH ++ + F L ++ AL+ M +K G+I
Sbjct: 165 RHSGVEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDI 224
Query: 348 EAASLVF---GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
+ VF + + ++++ M+ + + + +AI+ F +M+ G PD ++L
Sbjct: 225 NLSERVFEDLDDIRRQNIV--NVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLL 282
Query: 405 TA--CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+ C G+ + + D + S + + S+ G ++++ + ++P
Sbjct: 283 SVLDCLNLGKQVHSYTLKSGLILDLTVGSS------LFTMYSKCGSLEESYSLFQEIP-F 335
Query: 463 PDFVIWGAL 471
D W ++
Sbjct: 336 KDNACWASM 344
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 193/359 (53%), Gaps = 3/359 (0%)
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ L+ F S L + LH V+ G D +V Y + A ++
Sbjct: 70 PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
F T + V+ W ++ G + G L +A F MP++NV SW +++ + G L
Sbjct: 130 FSYTKD---VADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGML 186
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
KA +LF+ MP + SW++M+ G ++ E+AL +F +M+ GV N+ +VSA+SAC
Sbjct: 187 SKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSAC 246
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ + +LE GV VH Y G+ + TA+VDMY KCG I A VF K++ +W
Sbjct: 247 SLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWN 306
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+MI GLA++GR QA+ F KM +G P+ F+ +L AC +SG V F+ M
Sbjct: 307 SMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNG 366
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ I+P +H+ ++V+LL R G V +A++F+N MP P +WGAL AC+ H + ++ +
Sbjct: 367 FGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGE 425
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 30/190 (15%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N ++ ++ GL ++ + + F M+ + V PN S V++
Sbjct: 189 ARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNE------SALVSA 242
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHL-----------ADMYVQLGKTRGAFKVFDET 190
+S SL R L + GV A+ + L DMY + G A +VF
Sbjct: 243 VSACSLLRSL-----EHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAM 297
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDL 246
P KN + WN +I G + G +A+ LF M + N +++ L+ G +
Sbjct: 298 PVKN----IYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLV 353
Query: 247 KKAGELFEQM 256
+ LF M
Sbjct: 354 DEGRWLFNMM 363
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A+ +F KN++ +N +I GLA N +S F M VRPN +T+ + +
Sbjct: 287 IHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGA 346
Query: 139 VASLSLLSLGRGLHCLIVKS-GVEYDAFVRVH---LADMYVQLGKTRGAFKVFDETPEKN 194
+ L+ GR L ++V G++ V+ H + D+ + G R A + P +
Sbjct: 347 CSHSGLVDEGRWLFNMMVNGFGIQP---VQEHYGLMVDLLGRAGHVREAVDFVNSMPVEP 403
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVEL 221
LW L C G + E+
Sbjct: 404 HPG---LWGALAGACKIHGEVELGEEI 427
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 254/502 (50%), Gaps = 43/502 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T ++ L+ S + +HA + A + + T LI + S+ ++D A +F
Sbjct: 135 NPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVF 194
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D K++ + ++ AEN ++ + F M + +PN T KS L +
Sbjct: 195 DDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFN 254
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G+ +H +K ++D FV + L ++Y + G+ A ++F+E P+ + ++ W+++I
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTD----LIPWSLMI 310
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSL---------------- 236
++ ++A++LF M + +V AS VSL
Sbjct: 311 ARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLN 370
Query: 237 ---------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
+D + + G+++ + +LFE++P++ V+W +I G+ Q G+ E+A+ +F M
Sbjct: 371 SNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM 430
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
L+ ++ + T S L A A + ALE G+++H+ + + +L+DMYAKCG I
Sbjct: 431 LEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRI 490
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A L F + ++D ++W AMI G ++HG +A+ F M ++ +P+ F+ +L+AC
Sbjct: 491 NDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSAC 550
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+G + F+SM DY I+P ++H+T +V LL R+G+ D+A+ I ++ P ++
Sbjct: 551 SNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMV 610
Query: 468 WGALFCACRTHKDTKIAKIALQ 489
W AL AC HK + ++ Q
Sbjct: 611 WRALLGACVIHKKVDLGRVCAQ 632
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 128/526 (24%), Positives = 219/526 (41%), Gaps = 70/526 (13%)
Query: 11 TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQI-------------HAQIILH 57
T + +T + NI +S + S + L+QI H I+
Sbjct: 5 TIVRDSTKLSQLLHQCRNIHHQQCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKR 64
Query: 58 ----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113
+LFA + + + S SL A +FD N F L +G + + F
Sbjct: 65 GTSLDLFAQNILLNFYVQSNSLQD----ASKLFDEMPQTNTISFVTLAQGYSRDHQFHQA 120
Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
+ + + + N + + K + S+ L L LH + K G DAFV L D
Sbjct: 121 LHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDA 180
Query: 174 YVQLGKTRGAFKVFDETPEKNK----------------SESVLLWNVL------INGCSK 211
Y G A VFD+ K+ ES+ L+N + N +
Sbjct: 181 YSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTI 240
Query: 212 IGYLRKAVELFGMMPKKNVASW-------------VSLIDGFMRKGDLKKAGELFEQMPE 258
G L+ + L K+V ++L++ + + G++ A LFE+MP+
Sbjct: 241 SGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPK 300
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
++ W+ MI ++Q+ +++AL +F +M V N+FT S L ACA +L+ G ++
Sbjct: 301 TDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQI 360
Query: 319 HNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
H+ + FGL + A++D+YAKCG IE + +F E +++ +TW +I G G
Sbjct: 361 HSCVL--KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLG 418
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E+A+ F M+ +P + ++L A ++ L I+
Sbjct: 419 DGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQI-----HSLTIKTMYNKD 473
Query: 437 TVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
TVV N L ++ G+++ A +KM + D V W A+ C H
Sbjct: 474 TVVANSLIDMYAKCGRINDARLTFDKMNKR-DEVSWNAMICGYSMH 518
>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
Length = 734
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 147/495 (29%), Positives = 254/495 (51%), Gaps = 16/495 (3%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI +++K +T + +S + ++ +Q HA I++ L
Sbjct: 227 MVGYVQNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAVAIVNGL 286
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA +FD K++ +N+LI G + ++ I
Sbjct: 287 EMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVENAIDMCRL 346
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M +++ + +T + A L LG+ + C ++ E D + DMY + G
Sbjct: 347 MRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFESDIGLASTAVDMYAECGS 406
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A KVFD T +K+ ++LWN L+ ++ G+ +A+ LF M ++V V +
Sbjct: 407 VVDAKKVFDATVQKD----LILWNALLAAYTESGHSGEALRLFYEMQLQSVPPNVITRNL 462
Query: 240 FMR----KGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
MR G + +A E+F QM G+ +SWT M+NG QNG +E+A+ +ML++G
Sbjct: 463 IMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMLESG 522
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAA 350
R N ++ ALSACA + +L G +H YI N + T+LVDMYAKCG+I A
Sbjct: 523 ARPNTVSIAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSLVDMYAKCGDINKA 582
Query: 351 SLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
VFG E +L + AMI A++G+ ++A+ ++ + G EPD ++L+AC
Sbjct: 583 ERVFGSKLYSEFELPLYGAMISAYALYGKLKEAVTLYRNLEEIGIEPDDKTITSLLSACK 642
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+G K A+ F M + ++P ++H++++V LL+ G+V+KAL + +MP PD +
Sbjct: 643 NAGDTKQAIEIFAGMVSKHGMKPCLEHYSLMVELLASAGEVEKALRLVEEMPYKPDARVI 702
Query: 469 GALFCACRTHKDTKI 483
+L +C T++
Sbjct: 703 QSLLDSCNKQHKTEL 717
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 212/472 (44%), Gaps = 49/472 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+++ + F S I T+L+ + ++ + S+F +N+ + ++ +
Sbjct: 71 KQIHARVLKNGEFYSRNEYIETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRS 130
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ ++ FV ML + P+ P V K+ L GR +H ++KS + F
Sbjct: 131 RIGFSEDALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVF 190
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V LADMY + G A KVFDE PE+N V+ WN ++ G + G +A+ L
Sbjct: 191 VASSLADMYGKRGFLDDARKVFDEIPERN----VVAWNAMMVGYVQNGMNEEAIRLLSDM 246
Query: 223 ---GMMPKKNVASW---------------------------------VSLIDGFMRKGDL 246
G+ P + S SL++ + + G +
Sbjct: 247 KEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLI 306
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M K VV+W +I+G+ Q G E A+ M M ++ + T+ + +S
Sbjct: 307 EYAEMVFDRMIGKDVVTWNLLISGYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVA 366
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + VDMYA+CG++ A VF T +KDL+ W
Sbjct: 367 ARTRDLKLGKEVLCYCIRHSFESDIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWN 426
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
A++ G +A++ F +M P+ I+ + +GQV A F M+
Sbjct: 427 ALLAAYTESGHSGEALRLFYEMQLQSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQ-S 485
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
I P++ T ++N L + G ++A+ F+ KM E+ P+ V AC
Sbjct: 486 SGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMLESGARPNTVSIAIALSAC 537
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 230/479 (48%), Gaps = 45/479 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IHA +I + + LI+ I A +FD ++ +N +I G EN
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M LSV P+ +T V+ + L LGRG+H +VKS D +
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------- 206
L MY LG+ A VF + +S+ V+ W +I
Sbjct: 338 NSLIQMYSSLGRLEEAETVF----SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393
Query: 207 --------------NGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
+ C+ IG+L + L + K + S V SLID + + +
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F + K VVSWT++I G N + +AL +FF+ + ++ N T++S LSACA+
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACAR 512
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GAL G +H + G G + A++DMY +CG A F K KD+ W +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNIL 571
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G A G+ + A++ F KM+ PD F+++L AC SG V L +F+ M+ Y
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ P++KH+ VV++L R GQ+D A +FI MP PD IWGAL ACR H++ ++ +IA
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIA 690
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 218/471 (46%), Gaps = 88/471 (18%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F + +++ +NVL+ G A+ F ++ + ML +RPN T+P V K+ A
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+S ++ G+ +H +++ G E D V L MYV+ G A +FD+ P++++ +
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR----IS 266
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK----------KNVASWVSLID---------GFMR 242
WN +I+G + G + +ELF MM + VAS L+D G++
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV 326
Query: 243 K--------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K G L++A +F +M K VVSWTAMI + KA+
Sbjct: 327 KSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE 386
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+ M G+ ++ T+VS LSACA +G L+ G+R+H + +L+DMY+
Sbjct: 387 TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS 446
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KC ++ A VF K++++WT++I GL I+ R +A+ +F++M S +P+ ++
Sbjct: 447 KCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLIS 505
Query: 403 ILTACWYSGQVKL-----------------------------------ALNFFDSMRFDY 427
+L+AC G + ALN F+S + D
Sbjct: 506 VLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKKD- 564
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
V +++ ++ GQ A+ +KM E PD + + +L CAC
Sbjct: 565 -----VTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 53/352 (15%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---- 225
L M+V+ G A+ VF + E++ V WNVL+ G +K G +A+ L+ M
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERD----VFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193
Query: 226 PKKNVASWVS-----------------------------------LIDGFMRKGDLKKAG 250
+ NV ++ S LI +++ GD+ A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF++MP++ +SW AMI+G+ +NG + L +F M + V + T+ + SAC +
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
G VH Y+ ++FG ++ +L+ MY+ G +E A VF + KD+++WTAMI
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
L H +A++ +K M G PD +++L+AC G + L + + I+
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL-----HEIAIK 428
Query: 431 PSVKHHTVV----VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ H +V +++ S+ VD AL + + V W +L R +
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI-SGKNVVSWTSLILGLRIN 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 154/341 (45%), Gaps = 39/341 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA-EN 107
++H I L + ++ LI S K +D AL +F + + KN+ + LI GL N
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN 480
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
F++ + F ++ S++PN +T V + A + L G+ +H +++GV +D F+
Sbjct: 481 RSFEALL--FFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP 538
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ DMYV+ G+ A F+ ++ + V WN+L+ G ++ G + AVELF M +
Sbjct: 539 NAILDMYVRCGRKVPALNQFN-----SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
Query: 228 KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAE 278
+ +++SL+ + G + + E F M K + + +++ + G+ +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLD 653
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK-------G 331
A F Q D +R + + L+AC R+H + + K
Sbjct: 654 DAYD-FIQ--DMPIRPDAAIWGALLNAC----------RIHRNVELGEIAAKRVFEKDNK 700
Query: 332 AIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
++G L ++YA CGN + S V +E+ L W
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSW 741
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 155/393 (39%), Gaps = 49/393 (12%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
IT T + S ++ + R +H ++ + LI S ++ A ++F
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K++ + +I L + + + M + P+ +T V + A + L LG
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
LH + +K+G+ V L DMY + A +VF KN
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479
Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
K SV L +VL + C++IG L + E+ + V
Sbjct: 480 NRSFEALLFFRQMKESMKPNSVTLISVL-SACARIGALMRGKEIHAHALRTGVG-----F 533
Query: 238 DGFMRKGDLKKAGELFEQMP--------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
DGF+ L ++P +K V +W ++ G++Q G+A+ A+ +F +ML+
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
+ ++ T +S L AC+K G + G+ N + N + L + +VD+ + G +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK-NKYNLTPNLKHYACVVDILGRAGQL 652
Query: 348 EAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ A + D W A++ IH E
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G E+A+ ML+ + + ++ L C A + G RV+ +S + L +G
Sbjct: 76 GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
AL+ M+ + GN+ A VFG+ E+D+ +W ++ G A G +++A+ + +M+++
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ F ++L C + +RF + E V ++ + + G + A
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGF--ESDVDVGNALITMYVKCGDISNAR 253
Query: 454 NFINKMPETPDFVIWGALF 472
+KMP+ D + W A+
Sbjct: 254 MLFDKMPKR-DRISWNAMI 271
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 136/485 (28%), Positives = 236/485 (48%), Gaps = 45/485 (9%)
Query: 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
T+ ++IH ++ L + L+ ++YA +FD +++ ++ +IR
Sbjct: 110 TQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRS 169
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
L+ N F + M + VRP+ + + A + + +G+ +H ++++
Sbjct: 170 LSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEH 229
Query: 164 AFV--RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
V L DMY + G A ++F+ +K +V+ W +I GC + L + +L
Sbjct: 230 MGVPTTTALLDMYAKCGHLGLARQLFNGLTQK----TVVSWTAMIAGCIRSNRLEEGTKL 285
Query: 222 FGMMPKKNV---------------------------------------ASWVSLIDGFMR 242
F M ++N+ A +L+D + +
Sbjct: 286 FIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGK 345
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
D++ A LF+ + V+ WTAM++ ++Q ++A +F QM +GVR T+VS
Sbjct: 346 CSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 405
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LS CA GAL+ G VH+YI + + TALVDMYAKCG+I AA +F E +D+
Sbjct: 406 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 465
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
W A+I G A+HG E+A+ F +M G +P+ F+ +L AC ++G V F+
Sbjct: 466 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 525
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M + + P ++H+ +V+LL R G +D+A I MP P+ ++WGAL ACR HK+ +
Sbjct: 526 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 585
Query: 483 IAKIA 487
+ ++A
Sbjct: 586 LGELA 590
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 170/393 (43%), Gaps = 52/393 (13%)
Query: 30 TETHIISLIHSSNSTKQLRQ---IHAQIILH--NLFASSRITTQLISSASLHKSIDYALS 84
+E ++S+++ T +R +HA +I + N TT L+ + + A
Sbjct: 194 SEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQ 253
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F+ T K + + +I G ++ + F+ M ++ PN +T +
Sbjct: 254 LFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGA 313
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L LG+ LH I+++G + L DMY + R A +FD T ++ V++W
Sbjct: 314 LQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRD----VMIWTA 369
Query: 205 LINGCSKIGYLRKAVELF------GMMPKK----------------NVASWV-------- 234
+++ ++ + +A LF G+ P K ++ WV
Sbjct: 370 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 429
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L+D + + GD+ AG LF + + + W A+I GF+ +G E+AL +F
Sbjct: 430 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 489
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAK 343
+M GV+ ND T + L AC+ G + G ++ + + FGL I +VD+ +
Sbjct: 490 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM-VHTFGLVPQIEHYGCMVDLLGR 548
Query: 344 CGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
G + EA ++ + + + W A++ +H
Sbjct: 549 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 8/276 (2%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
++ C ++ + + E+ G + KK + V + + M ++ A +F++M E+
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW+ MI S+N E + AL + +M VR ++ +VS ++ A + G +H
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219
Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
Y+ + N+ + TAL+DMYAKCG++ A +F +K +++WTAMI G R
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
E+ + F +M P+ L+++ C ++G ++L + + F S+ T
Sbjct: 280 EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGF-SVSLALATA 338
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+V++ + + A + + D +IW A+ A
Sbjct: 339 LVDMYGKCSDIRNARALFDS-TQNRDVMIWTAMLSA 373
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 134/309 (43%), Gaps = 16/309 (5%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
NRL ++ + N IT +I + + + +Q+HA I+ + S +
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+ I A ++FD +++ I+ ++ A+ + + F M VR
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P ++T + A L LG+ +H I K VE D + L DMY + G A ++
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
F E S + +WN +I G + GY +A+++F M ++ V +++ L+
Sbjct: 457 FIEAI----SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512
Query: 243 KGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + + +LFE+M G+V + M++ + G ++A M M ++ N
Sbjct: 513 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM---PIKPNTI 569
Query: 298 TVVSALSAC 306
+ ++AC
Sbjct: 570 VWGALVAAC 578
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 16/198 (8%)
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+F S L AC +V + G +H ++ +G AL+ MY +C +E A LVF
Sbjct: 94 NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ E+D+++W+ MI L+ + ++ A++ ++M + P ++++ + +++
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213
Query: 416 ALNFFDSMRFDYFIEPSVKHH------TVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
Y I S H T ++++ ++ G + A N + + V W
Sbjct: 214 G-----KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT-VVSWT 267
Query: 470 ALFCAC----RTHKDTKI 483
A+ C R + TK+
Sbjct: 268 AMIAGCIRSNRLEEGTKL 285
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 230/479 (48%), Gaps = 45/479 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IHA +I + + LI+ I A +FD ++ +N +I G EN
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M LSV P+ +T V+ + L LGRG+H +VKS D +
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------- 206
L MY LG+ A VF + +S+ V+ W +I
Sbjct: 338 NSLIQMYSSLGRLEEAETVF----SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393
Query: 207 --------------NGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
+ C+ IG+L + L + K + S V SLID + + +
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F + K VVSWT++I G N + +AL +FF+ + ++ N T++S LSACA+
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACAR 512
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GAL G +H + G G + A++DMY +CG A F K KD+ W +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNIL 571
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G A G+ + A++ F KM+ PD F+++L AC SG V L +F+ M+ Y
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ P++KH+ VV++L R GQ+D A +FI MP PD IWGAL ACR H++ ++ +IA
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIA 690
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 218/471 (46%), Gaps = 88/471 (18%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F + +++ +NVL+ G A+ F ++ + ML +RPN T+P V K+ A
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+S ++ G+ +H +++ G E D V L MYV+ G A +FD+ P++++ +
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR----IS 266
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK----------KNVASWVSLID---------GFMR 242
WN +I+G + G + +ELF MM + VAS L+D G++
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV 326
Query: 243 K--------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K G L++A +F +M K VVSWTAMI + KA+
Sbjct: 327 KSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE 386
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+ M G+ ++ T+VS LSACA +G L+ G+R+H + +L+DMY+
Sbjct: 387 TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS 446
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KC ++ A VF K++++WT++I GL I+ R +A+ +F++M S +P+ ++
Sbjct: 447 KCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLIS 505
Query: 403 ILTACWYSGQVKL-----------------------------------ALNFFDSMRFDY 427
+L+AC G + ALN F+S + D
Sbjct: 506 VLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKKD- 564
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
V +++ ++ GQ A+ +KM E PD + + +L CAC
Sbjct: 565 -----VTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 53/352 (15%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---- 225
L M+V+ G A+ VF + E++ V WNVL+ G +K G +A+ L+ M
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERD----VFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193
Query: 226 PKKNVASWVS-----------------------------------LIDGFMRKGDLKKAG 250
+ NV ++ S LI +++ GD+ A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF++MP++ +SW AMI+G+ +NG + L +F M + V + T+ + SAC +
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
G VH Y+ ++FG ++ +L+ MY+ G +E A VF + KD+++WTAMI
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
L H +A++ +K M G PD +++L+AC G + L + + I+
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL-----HEIAIK 428
Query: 431 PSVKHHTVV----VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ H +V +++ S+ VD AL + + V W +L R +
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI-SGKNVVSWTSLILGLRIN 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 154/341 (45%), Gaps = 39/341 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA-EN 107
++H I L + ++ LI S K +D AL +F + + KN+ + LI GL N
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN 480
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
F++ + F ++ S++PN +T V + A + L G+ +H +++GV +D F+
Sbjct: 481 RSFEALL--FFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP 538
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+ DMYV+ G+ A F+ ++ + V WN+L+ G ++ G + AVELF M +
Sbjct: 539 NAILDMYVRCGRKVPALNQFN-----SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
Query: 228 KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAE 278
+ +++SL+ + G + + E F M K + + +++ + G+ +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLD 653
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK-------G 331
A F Q D +R + + L+AC R+H + + K
Sbjct: 654 DAYD-FIQ--DMPIRPDAAIWGALLNAC----------RIHRNVELGEIAAKRVFEKDNK 700
Query: 332 AIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
++G L ++YA CGN + S V +E+ L W
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSW 741
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 155/393 (39%), Gaps = 49/393 (12%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
IT T + S ++ + R +H ++ + LI S ++ A ++F
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
K++ + +I L + + + M + P+ +T V + A + L LG
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
LH + +K+G+ V L DMY + A +VF KN
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479
Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
K SV L +VL + C++IG L + E+ + V
Sbjct: 480 NRSFEALLFFRQMKESMKPNSVTLISVL-SACARIGALMRGKEIHAHALRTGVG-----F 533
Query: 238 DGFMRKGDLKKAGELFEQMP--------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
DGF+ L ++P +K V +W ++ G++Q G+A+ A+ +F +ML+
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
+ ++ T +S L AC+K G + G+ N + N + L + +VD+ + G +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK-NKYNLTPNLKHYACVVDILGRAGQL 652
Query: 348 EAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ A + D W A++ IH E
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G E+A+ ML+ + + ++ L C A + G RV+ +S + L +G
Sbjct: 76 GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
AL+ M+ + GN+ A VFG+ E+D+ +W ++ G A G +++A+ + +M+++
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ F ++L C + +RF + E V ++ + + G + A
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGF--ESDVDVGNALITMYVKCGDISNAR 253
Query: 454 NFINKMPETPDFVIWGALF 472
+KMP+ D + W A+
Sbjct: 254 MLFDKMPKR-DRISWNAMI 271
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 185/313 (59%), Gaps = 3/313 (0%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+ + G A + F+ TP ++ V+ W VL++G G + A E+F MP +N W
Sbjct: 163 FAKKGDMAEARRWFETTPPGMRT--VVTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVW 220
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
S++ G+ + G+ ++A +F ++P + +V+W A+I G++Q G +EKAL F ML V+
Sbjct: 221 SSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVK 280
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
++FT+ S LSACA++G+LE G +VH++I+ + L+DMYAKCG++ A +
Sbjct: 281 PDEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYI 340
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + K+ W MI LA HGR ++A+ F +M +SG P+ LA+L AC + G V
Sbjct: 341 FDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFV 400
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F+ + Y +E V+H+ +V+LL R G++ +A + MPE P+ VIWG+L
Sbjct: 401 DEGLRIFNKLDA-YGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLG 459
Query: 474 ACRTHKDTKIAKI 486
ACR H D +++++
Sbjct: 460 ACRVHGDAEMSRL 472
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 49/294 (16%)
Query: 133 PFVSKSVASLSLLS--LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
P + K+ A+ S LG+ LH +KS D V + MY + G A + FDE
Sbjct: 58 PILLKAAATASPAEPGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE- 116
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
MP +NV S+ +L+ G+ GD+ A
Sbjct: 117 ----------------------------------MPDRNVISYNALLAGYAAAGDMDGAL 142
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS---ALSACA 307
LF M V+W +I GF++ G+ +A +F+ G+R TVV+ +
Sbjct: 143 ALFGGMRSWTYVTWATLIRGFAKKGDMAEA-RRWFETTPPGMR----TVVTWTVLVHGYV 197
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
G +EA V + + + + +++V Y K GN E A VF ++L+ W A
Sbjct: 198 SAGDMEAAREVFDRMPARN----AFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNA 253
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+I G A G E+A++ F M+ +PD ++L+AC G ++ D
Sbjct: 254 LIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHD 307
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 48/290 (16%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+T T ++ S+ + R++ ++ N F S + T + + + A ++F
Sbjct: 187 VTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEE----AQAVFHR 242
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+NL +N LI G A+ + + F ML+ V+P+ T + + A L L G
Sbjct: 243 IPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQG 302
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H I + + + FV L DMY + G A +FD KN WN +I+
Sbjct: 303 KKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTE----CWNTMISA 358
Query: 209 CSKIGYLRKAVELF------GMMP---------------------------------KKN 229
+ G +A+ LF G P +
Sbjct: 359 LASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLDAYGVEAG 418
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAE 278
V + L+D R G LK+A E+ + MPE+ V W +++ +G+AE
Sbjct: 419 VEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAE 468
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 12/190 (6%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + T ++S S +Q +++H I ++ + + LI + + YA
Sbjct: 280 KP-DEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYAR 338
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IFD KN +N +I LA + + F M PN +T V +
Sbjct: 339 YIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGG 398
Query: 144 LLSLG----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+ G L V++GVE+ L D+ + GK + A+++ PE+
Sbjct: 399 FVDEGLRIFNKLDAYGVEAGVEHYGC----LVDLLGRAGKLKEAYEIVKNMPEEPNE--- 451
Query: 200 LLWNVLINGC 209
++W L+ C
Sbjct: 452 VIWGSLLGAC 461
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 214/422 (50%), Gaps = 37/422 (8%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVS 136
S+ A +FD +++ + L+ G A F M+ PN +T +
Sbjct: 181 SLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAA 240
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ + LL LGR +H +V+SGV
Sbjct: 241 SAAGQIGLLGLGRMVHQCVVESGVRM---------------------------------- 266
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
SV L N L++ K G + A E+F MP K+V SW S++ + + GDL+ AG+LF+++
Sbjct: 267 -SVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEI 325
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + VSW+ M+ +SQ E+A+ +F M+ AGV D T+VS LSACA++G L+ G
Sbjct: 326 PNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGR 385
Query: 317 RVHN-YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+++ YI + L + A +DM+AKCG++ AAS +F ++K++++W MI A+H
Sbjct: 386 CLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALH 445
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G+ E+A+ F+K G PD ++ +L+AC +SG V F M+ Y IEP +H
Sbjct: 446 GQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEH 505
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+ +++LL +VG +++A MP D WGAL ACR H + +I K A L+
Sbjct: 506 YACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLD 565
Query: 496 LS 497
S
Sbjct: 566 PS 567
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 131/282 (46%), Gaps = 33/282 (11%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR- 293
+L+ + L A +LF++M ++ VVSWT +++G+++ G ++A +F +M+ AG
Sbjct: 171 ALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGW 230
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
N+ T+V+A SA ++G L G VH + + + + ALVDM+ KCG + +A +
Sbjct: 231 PNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEI 290
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRY-------------------------------EQAI 382
F KD+ +WT+M+ A G E+A+
Sbjct: 291 FDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAM 350
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
+ F M+ +G EP +++L+AC G + + +D+ + +E +V +++
Sbjct: 351 RIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDM 410
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ G V A M E + V W + A H ++ A
Sbjct: 411 FAKCGDVGAASRLFRNM-EDKNVVSWNTMIVAHALHGQSEEA 451
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ GF + G+ ALA+F ++L + A+ T+V A+ A A + A I C
Sbjct: 103 MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKA-ATTSSSPA-----EAIHCVA 156
Query: 327 F-----GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
F G +G ALV MYA ++ A +F E ++D+++WT ++ G A G ++A
Sbjct: 157 FKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEA 216
Query: 382 IQYFKKMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M+ +G P+ +A +A G + L + + SV +V
Sbjct: 217 WRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLG-RMVHQCVVESGVRMSVNLENALV 275
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ + G V A + MP D W ++ A
Sbjct: 276 DMFGKCGCVASAKEIFDGMP-IKDVYSWTSMVSA 308
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 148/484 (30%), Positives = 233/484 (48%), Gaps = 49/484 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIH ++ +F + R ++L+ + YA + ++ +++ L+ +
Sbjct: 19 KQIHCLVLTSPIFYTRRDLFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFS 78
Query: 106 ENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+S + M R V P+R T+P + K+V L + + H I+K G + D
Sbjct: 79 GRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQ-FHAHILKFGFDSD 137
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
FVR L Y G +VFD T +K+ V+ W +I+G + +A+ F
Sbjct: 138 LFVRNSLISGYSNCGLFEFGSRVFDGTEDKD----VVSWTAMIDGFVRNDSSLEAMTYFV 193
Query: 224 MMPKKNVAS----------------------------------------WVSLIDGFMRK 243
M + VA+ SL+D + +
Sbjct: 194 EMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKC 253
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G A ++F++MP + VV+WTA+I G+ Q EK + +F +ML + V N+ T+ S L
Sbjct: 254 GCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVL 313
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
SACA VGAL G RVH Y+ N + +GT L+D YAKCG +E A LVF +EK++
Sbjct: 314 SACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVY 373
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
TWTAMI G A HG A+ F M+ S P+ F+ +L+AC + G V+ F SM
Sbjct: 374 TWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSM 433
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+ + +EP H+ +V+L R G +++A I +MP P +WGALF +C HKD ++
Sbjct: 434 KERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYEL 493
Query: 484 AKIA 487
K A
Sbjct: 494 GKYA 497
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 22/290 (7%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIH-----AQIILHNLFASSRIT 66
A+ +K S +N +T ++ + + R IH A + ++F I
Sbjct: 188 AMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVF----IG 243
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ L+ D A +FD +N+ + LI G + F+ + F ML+ V
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVA 303
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T V + A + L GR +HC ++K+ +E + V L D Y + G A V
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILV 363
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
F+ EKN V W +ING + GY AV+LF M +V+ +++ ++
Sbjct: 364 FERLREKN----VYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAH 419
Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQM 287
G +++ LF M E+ + + M++ F + G E+A A+ +M
Sbjct: 420 GGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERM 469
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 214/431 (49%), Gaps = 64/431 (14%)
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
+V M V PN T+ F+ ++ A L L +H IV+ G D FV+ L D+Y +
Sbjct: 98 YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYR 157
Query: 177 L------------------------------------GKTRGAFKVFDETPEKN------ 194
G GA +F+ PE+N
Sbjct: 158 CGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNT 217
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
S + + WN++I+G + G + A +F M +K+V SW
Sbjct: 218 VVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSW 277
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF-FQMLDAGV 292
+++ + + GDL A ELF+ MP K +VSW AMI G++ N ++AL F ML+
Sbjct: 278 TAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF 337
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
R ++ T+VS +SACA++G++E + ++I ++ L A+G AL+DM+AKCG++ A
Sbjct: 338 RPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQS 397
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
+F + + + ++TWT MI G A +G +A+ + M G E DGTVF+A L AC + G
Sbjct: 398 IFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGL 457
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ + F+ M Y I+P ++H+ VV+LL R G + +A+ FI MP P VIW L
Sbjct: 458 LQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLL 517
Query: 473 CACRTHKDTKI 483
+C H + ++
Sbjct: 518 SSCVAHGNAEL 528
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 140/346 (40%), Gaps = 75/346 (21%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF-VFMLRLSV 125
T ++S+ + +D A +FDH KNL +N +I G NS + + F + ML
Sbjct: 278 TAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF 337
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RP+ T V + A L VEY ++ + GK+
Sbjct: 338 RPDEATLVSVVSACAQLG---------------SVEYCNWISSFI-------GKS----- 370
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
N +V L N LI+ +K G + +A +F M + + +W ++I G
Sbjct: 371 --------NTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISG------ 416
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
F+ NG +AL ++ M GV + ++AL+A
Sbjct: 417 -------------------------FAFNGLCREALLVYNNMCREGVELDGTVFIAALAA 451
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK--EKD 361
C G L+ G + N + + ++ + +VD+ + GN++ A ++F E+ E
Sbjct: 452 CTHGGLLQEGWSIFNEM-VEQYNIQPRMEHYGCVVDLLGRAGNLQEA-ILFIESMPLEPS 509
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
++ W ++ HG E I+Y K + + EP + + +++ C
Sbjct: 510 VVIWVTLLSSCVAHGNAE-LIEYVSKKI-TELEPFNSSYQVLVSNC 553
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 156/555 (28%), Positives = 252/555 (45%), Gaps = 99/555 (17%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ L +++ + + +H+ II + + + LISS + SI YA +FD N
Sbjct: 15 LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74
Query: 94 LHIFNV-------------------------------LIRGLAENSHFQSCISHFVFMLR 122
L+ +N LI G A + + ML+
Sbjct: 75 LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134
Query: 123 L--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
S NR+T+ + + + LGR +H +VK G FV L DMY ++G
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194
Query: 181 RGAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSKIG 213
A KVFDE PEKN + + W +I G ++ G
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254
Query: 214 YLRKAVELF-----------------------GMMP----------------KKNVASWV 234
R A+++F G+M K N+
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVAS 314
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+D + + ++K A +F++M K VVSWTAM+ G+ QNG +E+A+ F M G+
Sbjct: 315 ALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEP 374
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+DFT+ S +S+CA + +LE G + H + + ALV +Y KCG+IE + +F
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLF 434
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
E KD +TWTA++ G A G+ + I F+ M+ G +PD F+ +L+AC +G V+
Sbjct: 435 NEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVE 494
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
F+SM ++ I P H+T +++L SR G++++A NFINKMP +PD + W L +
Sbjct: 495 KGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSS 554
Query: 475 CRTHKDTKIAKIALQ 489
CR + + I K A +
Sbjct: 555 CRFYGNMDIGKWAAE 569
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 7/239 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
++ T +IS + S ++ Q HA+ + L + ++ L++ SI+ + +F
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLF 434
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ + K+ + L+ G A+ I F ML ++P+++T+ V + + L+
Sbjct: 435 NEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVE 494
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G + +I + G+ + D++ + G+ A ++ P S + W L
Sbjct: 495 KGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP---FSPDAISWATL 551
Query: 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++ C G + + A E + N AS+V L + KG ++ L + M +KG+
Sbjct: 552 LSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGL 610
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 240/449 (53%), Gaps = 13/449 (2%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H ++ + S + + L+S S + + A F K++ + +I +
Sbjct: 258 RCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRM 317
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
CI F ML + P+ + + S ++ + + H LI++ D V+
Sbjct: 318 GWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQ 377
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM--M 225
L MY + G + A K F E+N WN++++G +L +++ + + +
Sbjct: 378 NALLSMYCKFGFLKLAEKFFGRVNEQNFEA----WNLMVSGYGAT-HLARSIHCYMIKNL 432
Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+NV+ SLID + + G+L A +F ++P + +V+W +I+ ++ G +AL+++
Sbjct: 433 MDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYD 491
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M+ ++ N T+VS LSAC+ + +LE G +VHNYI+ F +I TAL+DMYAKCG
Sbjct: 492 KMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCG 551
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+E + +F E+D++TW MI G +HG AI++F++M S +P+G FLA+L+
Sbjct: 552 QLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLS 611
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G VK F M+ DY + P++KH+ +V+LL R G + +A + MP +PD
Sbjct: 612 ACAHAGLVKEGKYLFGKMQ-DYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDG 670
Query: 466 VIWGALFCACRTHKD----TKIAKIALQS 490
+WGAL +C+ H + +IAK A+ S
Sbjct: 671 GVWGALLSSCKIHNEIEMGIRIAKHAIDS 699
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 170/394 (43%), Gaps = 51/394 (12%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS-SASLHKSID 80
SH+P++ H++S + +S K L Q HA II + I ++LIS AS HK
Sbjct: 28 SHEPNDFNYLNHLLS--NQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKP-S 84
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+ +FD ++ ++N +I+ N + + + +M PN T P + S A
Sbjct: 85 CSTELFDEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCA 144
Query: 141 SLSLLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
L L++ GR +H L+ K G+ + V MY + G A+ VFDE ++ V
Sbjct: 145 ELELVNYGRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRD----V 200
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPK-----------------KNVASWVSLIDGFMR 242
+ W L+ GC + G + +E M + + + +L++G
Sbjct: 201 VAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCL 260
Query: 243 KGDLKKAGELFEQM--------------PE-----------KGVVSWTAMINGFSQNGEA 277
G + K G + Q+ PE K ++SWT+MI+ +S+ G A
Sbjct: 261 HGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWA 320
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
+ + MF++ML +G+ + + LS+ + + H I + L + AL
Sbjct: 321 TECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNAL 380
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
+ MY K G ++ A FG E++ W M+ G
Sbjct: 381 LSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSG 414
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/391 (26%), Positives = 167/391 (42%), Gaps = 56/391 (14%)
Query: 124 SVRPNRLTY--PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
S PN Y +S ++SL L H I+ SG + F+ L +Y K
Sbjct: 28 SHEPNDFNYLNHLLSNQISSLKTLLQS---HAFIITSGYSNNIFIASKLISLYASFHKPS 84
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-----------V 230
+ ++FDE P ++ LWN +I G +A++ + M V
Sbjct: 85 CSTELFDEIPHRD----AFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIV 140
Query: 231 ASWVSL--------IDGFMRK---------------------GDLKKAGELFEQMPEKGV 261
AS L I G + K G L++A +F+++ + V
Sbjct: 141 ASCAELELVNYGRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDV 200
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML---DAGVRANDFTVVSALSACAKVGALEAGVRV 318
V+WTA++ G QNGE++ L +M G R N T+ AC +GAL G +
Sbjct: 201 VAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCL 260
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + + + L+ MY+KCGN E A F E KD+++WT+MI + G
Sbjct: 261 HGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWA 320
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHT 437
+ I F +M+ SG PDG V +L++ S +V A F +R Y ++ V++
Sbjct: 321 TECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQN-- 378
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
++++ + G + A F ++ E +F W
Sbjct: 379 ALLSMYCKFGFLKLAEKFFGRVNEQ-NFEAW 408
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 49/314 (15%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
R N + + V+ L R +HC ++K+ ++ + V L DMY + G A +
Sbjct: 399 RVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARR 458
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS------ 235
+F P ++ WN LI+ + G+ +A+ L+ M K N A+ VS
Sbjct: 459 IFCRIPRD-----IVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACS 513
Query: 236 -----------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
LID + + G L+K+ E+F M E+ V++W
Sbjct: 514 HLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNV 573
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI+G+ +G+A A+ F QM ++ + N T ++ LSACA G ++ G + + D
Sbjct: 574 MISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKM--QD 631
Query: 327 FGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+ + + +VD+ + GN+ EA +LV D W A++ IH E I+
Sbjct: 632 YSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIR 691
Query: 384 YFKKMMYSGTEPDG 397
K + S E DG
Sbjct: 692 IAKHAIDSDVENDG 705
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
NDF ++ L + ++ +L+ ++ H +I + + I + L+ +YA ++ +F
Sbjct: 32 NDFNYLNHLLS-NQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELF 90
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
E +D W ++I +G Y +A+ +++ M S P+ I+ +C +++
Sbjct: 91 DEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASC---AELE 147
Query: 415 LALNFFDSM-----RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
L +N+ S+ + F S + V + S+ G +++A +++ D V W
Sbjct: 148 L-VNYGRSIHGLVSKLGLFSGSSAVGSSFVY-MYSKCGVLEEAYGVFDEIL-FRDVVAWT 204
Query: 470 ALFCACRTHKDTKIA 484
AL C + ++K+
Sbjct: 205 ALVIGCVQNGESKMG 219
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 145/471 (30%), Positives = 234/471 (49%), Gaps = 50/471 (10%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---- 78
H+ NN I L+ S + L+QIHA +++ L S L+ A+
Sbjct: 3 HQTFNNA----ISPLLRKCKSVQHLKQIHAHLLMTYLPQSPYAIAPLLEVAATSGCDRDS 58
Query: 79 -IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
YA IF + +N+ ++N +IRG + + I ++ ++ N+ T+P + K
Sbjct: 59 FFSYACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIK 118
Query: 138 SVASL--SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A + L +G +H ++ G E DAFV L + Y +FD
Sbjct: 119 ACALVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFY----------SLFD------- 161
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
L+ A LF K+V W ++DG+ + GD++ A LF++
Sbjct: 162 -------------------LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDE 202
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ V+SW+AM+ +S+ + + L +F QM + ND +VS L+ACA +GA+ G
Sbjct: 203 MPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGAITQG 262
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ +H+Y + TALVDMY+KCG IE+A VF KD W AMI G A+
Sbjct: 263 LWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMT 322
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G ++++ F KM+ SGT+ F++IL AC ++ V+ L FFD M Y ++P +H
Sbjct: 323 GNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEH 382
Query: 436 HTVVVNLLSRVGQVDKALNFI-NKMP--ETPDFVIWGALFCACRTHKDTKI 483
+ VV+L++R G V+ A F+ KM D +WGA+ ACR +++ +I
Sbjct: 383 YACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEI 433
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 172/283 (60%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ +I SK G +KA +F M KN +W ++IDG+MR G + A ++F++MPE
Sbjct: 109 VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPE 168
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+AL F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 169 RDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWV 228
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF +++ +++W ++I G A +G
Sbjct: 229 HRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNA 288
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F M+ DY I P ++H+
Sbjct: 289 HESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGC 348
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
+V+L SR G+++ AL + MP P+ V+ G+L AC H +
Sbjct: 349 LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNN 391
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GAL 312
Q + VSWT+ IN ++NG +A F M AGV N T ++ LS C G+
Sbjct: 30 QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSE 89
Query: 313 EAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLV---------------- 353
G +H Y +C GL +GTA++ MY+K G + A LV
Sbjct: 90 ALGDLLHGY-ACK-LGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMI 147
Query: 354 ---------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
F + E+DL++WTAMI G G E+A+ +F++M SG +PD
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYV 207
Query: 399 VFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+A L AC G + L + S F + +V+ +++L R G V+ A
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVLSQDF----KNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 456 INKMPETPDFVIWGALF 472
M E V W ++
Sbjct: 264 FYNM-EKRTVVSWNSVI 279
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 69/274 (25%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD ++L + +I G + + + + F M V+P+ + +
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G +H ++ + + V L D+Y + G A +VF
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVF----------- 264
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+N M K+ V SW S+I GF G+ ++ F +M E
Sbjct: 265 ---YN---------------------MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
K G + + T AL+AC+ VG +E G+R
Sbjct: 301 K-------------------------------GFKPDAVTFTGALTACSHVGLVEEGLRY 329
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ C D+ + I LVD+Y++ G +E A
Sbjct: 330 FQIMKC-DYRISPRIEHYGCLVDLYSRAGRLEDA 362
>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 222/417 (53%), Gaps = 24/417 (5%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH-----FVFMLRLSVRPNRLT 131
+ + A S+FD +N+ +N +I G C++H + R N +
Sbjct: 62 RDLPAARSLFDDMPSRNVISWNSIIAG---------CLAHGDLAAASAYFARAPRRNVAS 112
Query: 132 YPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
+ + + L + R L + ++ V Y V D + G+ A ++FD
Sbjct: 113 WNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMV-----DGLARCGEVASARELFDAM 167
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
P +N ++ W +I+G L +A +LF MP+KNV + ++I G+ ++GDL+ A
Sbjct: 168 PTRN----LVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNAR 223
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LF+ + K V+SW A+I+G+ NG E+A ++ ML G++ + T+++ L+AC+ +
Sbjct: 224 RLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLA 283
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L G H + +I AL+ MY+KCGN++ + LVF K +D+++W +I
Sbjct: 284 LLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIA 343
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
A HGRY++ I F +M G P+ FL++L+AC ++G+V +L FD M Y I
Sbjct: 344 AYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAIS 403
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P +H+ +V++LSR GQ++KA ++I +MP + +WG L CA +TH + ++ ++A
Sbjct: 404 PRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELA 460
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 140/333 (42%), Gaps = 61/333 (18%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG-DLKKAGELFEQMPEKGV 261
N I ++ G + A +F MP+++ SW +L+ R G DL A LF+ MP + V
Sbjct: 20 NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79
Query: 262 V-------------------------------SWTAMINGFSQNGEAEKALAMFFQMLDA 290
+ SW AM+ G + G E A ++F QM +
Sbjct: 80 ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPER 139
Query: 291 GVRANDFTVVSALSACAKVGALEA-------------GVRVHNYISCN----------DF 327
V + T+V L+ C +V + + Y+ N
Sbjct: 140 NV-VSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAM 198
Query: 328 GLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
K + TA++ Y K G+++ A +F + KD+++W A+I G +G E+A + +
Sbjct: 199 PEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYI 258
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M+ G +PD +A+LTAC ++ + ++ +E S+ ++ + S+
Sbjct: 259 IMLREGIKPDQATLIALLTACSSLALLRQGRSTH-AVVIKAMLESSISICNALMTMYSKC 317
Query: 447 GQVDKA-LNFINKMPETPDFVIWGALFCACRTH 478
G VD++ L F++ ++ D V W + A H
Sbjct: 318 GNVDESELVFMSL--KSQDIVSWNTIIAAYAQH 348
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 157/348 (45%), Gaps = 26/348 (7%)
Query: 25 PSNNITE-THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
P+ N+ +IS +N ++ R++ + N+ A + + T L A
Sbjct: 168 PTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQN----AR 223
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD K++ +N +I G N + ++ MLR ++P++ T + + +SL+
Sbjct: 224 RLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLA 283
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
LL GR H +++K+ +E + L MY + G + VF KS+ ++ WN
Sbjct: 284 LLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSL----KSQDIVSWN 339
Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+I ++ G +K + LF G++P N +++S++ G + ++ +LF+ M
Sbjct: 340 TIIAAYAQHGRYQKVIALFHEMELCGLIP--NDITFLSMLSACGHAGRVDESLKLFDLMF 397
Query: 258 EKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
K +S + +++ S+ G+ EKA + + + + + N + + L A G +
Sbjct: 398 SKYAISPRAEHYACIVDILSRAGQLEKACS-YIKEMPSEAEKNVWGTL--LCASQTHGNV 454
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
+ G + +DF GA L ++YA G + V + KEK
Sbjct: 455 QLGELAAKMLVLSDFESSGAY-VMLSNIYAAAGMWGEVNRVRSQMKEK 501
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 206/390 (52%), Gaps = 34/390 (8%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
LI + + + + F ML + P+ +T V + A L L LGR LH L+ + G
Sbjct: 210 LIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKG 269
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ + V L DMY + G A +VFD
Sbjct: 270 MPTSENLVVALIDMYAKCGDFGHAQQVFDA------------------------------ 299
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
G P+ SW ++IDG+ + G + A LF++M + ++++ +M+ G+ +G+ +
Sbjct: 300 --LGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F M +R ++FTVV+ L+ACA +GAL+ G +H I +GTAL+D
Sbjct: 356 ALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLD 415
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG ++ A++VF ++D+ TWTAMI GLA +G + A+++F +M G +P+
Sbjct: 416 MYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVS 475
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++A+LTAC +S + +FD MR Y I P ++H+ +++LL R G +D+A++ + M
Sbjct: 476 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 535
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P P+ VIW ++ ACR HK +A+ A +
Sbjct: 536 PIQPNAVIWASILSACRVHKHIDLAQCAAE 565
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 186/419 (44%), Gaps = 60/419 (14%)
Query: 40 SSNSTKQLRQIHAQI-----ILHNLFASSRITTQLISSASLHK-SIDYALSIFDHFTPKN 93
+ + +Q ++HA++ +L + ++ + L++ H + YAL +FD P
Sbjct: 8 TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPST 67
Query: 94 LHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL----SLLSLG 148
+F+ +R + S F M R VRP+ T+ F+ K +S SLL L
Sbjct: 68 F-LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLL-LC 125
Query: 149 RGLHCLIVKSGVEYDA-FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
LH +++ + A FV L MY++LG A + FDE K+ + W +LI+
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKD----AVAWTMLIS 181
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G +K+G L L P ++V SW SLI
Sbjct: 182 GLAKMGMLCDTQLLLSQAPVRDVISWTSLI------------------------------ 211
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
+S+ A +A+ F ML G+ ++ TV++ LSACAK+ LE G +H +
Sbjct: 212 -AAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM 270
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ AL+DMYAKCG+ A VF + +W A+I G HG + A F
Sbjct: 271 PTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFD 330
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLS 444
+M D F +++T +SGQ++ AL F SM R D ++ + VVNLL+
Sbjct: 331 EMEVR----DIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVD-----NFTVVNLLT 380
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 28/284 (9%)
Query: 51 HAQIILHNLFASSRITT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
HAQ + L R + +I H +D A S+FD +++ FN ++ G +
Sbjct: 292 HAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSG 351
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + F+ M R +R + T + + ASL L GR LH I + VE D ++
Sbjct: 352 QLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGT 411
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
L DMY++ G+ A VF +++ V W +I G + G + A+E F M
Sbjct: 412 ALLDMYMKCGRVDEATIVFQRMGKRD----VHTWTAMIAGLAFNGMGKAALEHFYQMRCD 467
Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
+ N S+++++ L + F++M + + MI+ ++G ++
Sbjct: 468 GFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 527
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
A+ + M ++ N S LSAC RVH +I
Sbjct: 528 AMDLVKTM---PIQPNAVIWASILSAC----------RVHKHID 558
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+N T ++++ S + +Q R +HA I + A + T L+ +D A +F
Sbjct: 371 DNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVF 430
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+++H + +I GLA N ++ + HF M +PN ++Y V + + LL+
Sbjct: 431 QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLN 490
Query: 147 LGR----------GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
GR +H I G D R L D + L KT
Sbjct: 491 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 534
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 231/468 (49%), Gaps = 48/468 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
ETH ++ N K+ ++IH + I ++ + ++ S S K++ A +FD
Sbjct: 301 ETHALA----CNQLKESQRIHGRAIK---LGTTILEPDIVCSYSASKALWDACKLFDEVP 353
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++ I A H + I F ML L+++PN+ ++ V S +L L+ GR
Sbjct: 354 NWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQ 413
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K G+E + FV + D Y +L A K F++T E N
Sbjct: 414 LHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPN---------------- 457
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
V S+ +LI G+++K A LF +MPE+ VVSW AMI+G
Sbjct: 458 -------------------VVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISG 498
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+SQ G E+A+ +F ML G N+ T A+SA A + AL G H
Sbjct: 499 YSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFD 558
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
IG +LV YAKCG++E + LVF +K++++W A+I G A HGR +AI +F+KM
Sbjct: 559 VFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQD 618
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVG 447
+G P+ L +L AC +SG V ++F+ R + EP + +HH +V+LLSR G
Sbjct: 619 TGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVE---EPGLLTPEHHACMVDLLSRSG 675
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+ +A F++++P P W AL CR H + ++ ++A + +L+
Sbjct: 676 RFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILALD 723
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 206/390 (52%), Gaps = 34/390 (8%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
LI + + + + F ML + P+ +T V + A L L LGR LH L+ + G
Sbjct: 210 LIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKG 269
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ + V L DMY + G A +VFD
Sbjct: 270 MPTSENLVVALIDMYAKCGDFGHAQQVFDA------------------------------ 299
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
G P+ SW ++IDG+ + G + A LF++M + ++++ +M+ G+ +G+ +
Sbjct: 300 --LGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F M +R ++FTVV+ L+ACA +GAL+ G +H I +GTAL+D
Sbjct: 356 ALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLD 415
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG ++ A++VF ++D+ TWTAMI GLA +G + A+++F +M G +P+
Sbjct: 416 MYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVS 475
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++A+LTAC +S + +FD MR Y I P ++H+ +++LL R G +D+A++ + M
Sbjct: 476 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 535
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P P+ VIW ++ ACR HK +A+ A +
Sbjct: 536 PIQPNAVIWASILSACRVHKHIDLAQCAAE 565
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 176/398 (44%), Gaps = 54/398 (13%)
Query: 40 SSNSTKQLRQIHAQI-----ILHNLFASSRITTQLISSASLHK-SIDYALSIFDHFTPKN 93
+ + +Q ++HA++ +L + ++ + L++ H + YAL +FD P
Sbjct: 8 TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPST 67
Query: 94 LHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL----SLLSLG 148
+F+ +R + S F M R VRP+ T+ F+ K +S SLL L
Sbjct: 68 F-LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLL-LC 125
Query: 149 RGLHCLIVKSGVEYDA-FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
LH +++ + A FV L MY++LG A + FDE K+ + W +LI+
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKD----AVAWTMLIS 181
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G +K+G L L P ++V SW SLI
Sbjct: 182 GLAKMGMLCDTQLLLSQAPVRDVISWTSLI------------------------------ 211
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
+S+ A +A+ F ML G+ ++ TV++ LSACAK+ LE G +H +
Sbjct: 212 -AAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM 270
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ AL+DMYAKCG+ A VF + +W A+I G HG + A F
Sbjct: 271 PTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFD 330
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
+M D F +++T +SGQ++ AL F SMR
Sbjct: 331 EMEVR----DIITFNSMMTGYIHSGQLREALLLFMSMR 364
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 28/284 (9%)
Query: 51 HAQIILHNLFASSRITT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
HAQ + L R + +I H +D A S+FD +++ FN ++ G +
Sbjct: 292 HAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSG 351
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ + F+ M R +R + T + + ASL L GR LH I + VE D ++
Sbjct: 352 QLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGT 411
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
L DMY++ G+ A VF +++ V W +I G + G + A+E F M
Sbjct: 412 ALLDMYMKCGRVDEATIVFQRMGKRD----VHTWTAMIAGLAFNGMGKAALEHFYQMRCD 467
Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
+ N S+++++ L + F++M + + MI+ ++G ++
Sbjct: 468 GFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 527
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
A+ + M ++ N S LSAC RVH +I
Sbjct: 528 AMDLVKTM---PIQPNAVIWASILSAC----------RVHKHID 558
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+N T ++++ S + +Q R +HA I + A + T L+ +D A +F
Sbjct: 371 DNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVF 430
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+++H + +I GLA N ++ + HF M +PN ++Y V + + LL+
Sbjct: 431 QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLN 490
Query: 147 LGR----------GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
GR +H I G D R L D + L KT
Sbjct: 491 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 534
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 224/451 (49%), Gaps = 34/451 (7%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ +S Q+ QIH I+ F + L+ ++ + A +F +
Sbjct: 136 LLQASKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVS 195
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN++I G A+ H + M+ L ++P+ T + L LG+ +H I
Sbjct: 196 FNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIE 255
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ G+ KS +++L N L++ K LR
Sbjct: 256 RRGL---------------------------------IKSSNLILNNALLDMYVKCKELR 282
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
A +F ++ +K+ SW ++I G+ + G+L+ A FE MP + +VSW ++I G++Q G+
Sbjct: 283 IAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGD 342
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+F M+ + + T+++ +SA A++GAL G +H ++ + +G+A
Sbjct: 343 CLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSA 402
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
+DMY KCG+I+ A +VF E EKD+ WT MI G A HG +A+Q F +M P+
Sbjct: 403 FIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQ-EYVMPN 461
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F+A+LTAC +SG V L F+SM+ Y IEP V+H+ +V+LL R G+ + + I
Sbjct: 462 QVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVI 521
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
MP P IWGA+ ACR + + +IA+IA
Sbjct: 522 EMMPMKPSRSIWGAVLSACRAYGNIEIAEIA 552
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 25/304 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHK 77
IKSS+ NN +L+ K+LR AQ I + + I+ +I+ +
Sbjct: 260 IKSSNLILNN-------ALLDMYVKCKELRI--AQSIFNVIVRKDTISWNTMIAGYAKVG 310
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+++ A + F+ ++L +N +I G A+ F M+ ++ P+ +T +
Sbjct: 311 NLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVS 370
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A + L GR +H +V+ ++ DAF+ DMY + G + A VF E EK+
Sbjct: 371 AAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKD--- 427
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFE 254
V +W +I G + GY KA++LF M + N ++V+++ G + + +F
Sbjct: 428 -VTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFN 486
Query: 255 QMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M E+ GV + +++ ++G + + M ++ + + LSAC
Sbjct: 487 SMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMM---PMKPSRSIWGAVLSACRAY 543
Query: 310 GALE 313
G +E
Sbjct: 544 GNIE 547
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 100/247 (40%), Gaps = 38/247 (15%)
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
P + + MI+ S + ++ A + +L + + N T + L A +K + +
Sbjct: 93 PHPNLYIYNTMISALSLS--LNQSFAFYNSLLSSCIYPNRSTFLFLLQA-SKFLSQVMQI 149
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
H I+ + + G + L+ +Y + + A VF + D +++ MI+G A G
Sbjct: 150 HCHAIITGSFY--YGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKG 207
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN----------------FF 420
+A+++ +M+ G +PD L +L C G +L +
Sbjct: 208 HNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLIL 267
Query: 421 DSMRFDYFIEPS------------VKHHTVVVNLL----SRVGQVDKALNFINKMPETPD 464
++ D +++ V+ T+ N + ++VG ++ A NF MP D
Sbjct: 268 NNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMP-CRD 326
Query: 465 FVIWGAL 471
V W ++
Sbjct: 327 LVSWNSI 333
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 213/398 (53%), Gaps = 42/398 (10%)
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
L + N T+ + K+ L G +H ++KSG D F++ L Y+ G
Sbjct: 12 LPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSS 71
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---------------- 226
A +FD P+ + V+ W +I+G SK+G+ ++A+ F M
Sbjct: 72 ASLIFDSIPDPD----VVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSTCS 127
Query: 227 --------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
++NV +L+D ++R L+ A LFE+MP++ VVSWT
Sbjct: 128 SLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTT 187
Query: 267 MINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYI-SC 324
MI G++Q+G E+A+ +F M+ G N+ T+V+ LSAC+ + AL G VH+YI S
Sbjct: 188 MIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSR 247
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
+D + G +G AL++MY KCGN+E A L+F T+ KD+++W+ +I GLA++G +QA
Sbjct: 248 HDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVL 307
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M+ G PD FL +L+AC + G + + F++M+ Y I P ++H+ +V++
Sbjct: 308 FSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYG 367
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+ G +D+A FI +MP + +WGAL AC+ H + K
Sbjct: 368 KAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEK 405
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 186/419 (44%), Gaps = 56/419 (13%)
Query: 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
+ P ++ SH N+ T T+ + + T++ +IHA +I + I L+
Sbjct: 6 LQPNASLPISH---NHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHF 62
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
L + A IFD ++ + +I GL++ + +S F L ++VRPN T
Sbjct: 63 YILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKF---LSMNVRPNSTTL 119
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
+ +SL L LG+ +H L +++ E + + L D YV+ R A +F++ P+
Sbjct: 120 VTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPK 179
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKK----------------N 229
++ V+ W +I G ++ G +AV +F M P + +
Sbjct: 180 RD----VVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALH 235
Query: 230 VASWV------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ WV +LI+ +++ G+++ A +F+ K +VSW+ +I+G
Sbjct: 236 LGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGL 295
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLK 330
+ NG ++A +F ML G+ +D T + LSAC+ G + G+ V + + +
Sbjct: 296 AMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQ 355
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG---RYEQAIQYF 385
+VDMY K G ++ A E E + W A++ +HG +YE+ ++
Sbjct: 356 MRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWL 414
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 48/513 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH Q++ F + + T L+ + I A +F+ T +N+ + +I G +N
Sbjct: 162 KKIHCQLVKVPSF-DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKN 220
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M +V N TY + + LS L G+ H +VKSG+E + +
Sbjct: 221 DLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLV 280
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----G 223
L DMYV+ G A +VF+E + +++W +I G + G + +A+ LF G
Sbjct: 281 TSLLDMYVKCGDISNARRVFNEHSHVD----LVMWTAMIVGYTHNGSVNEALSLFQKMKG 336
Query: 224 MMPKKNVASWVSLIDG----------------------------------FMRKGDLKKA 249
+ K N + S++ G + + + A
Sbjct: 337 VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDA 396
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+FE EK +V+W ++I+GFSQNG +AL +F +M V N TV S SACA +
Sbjct: 397 KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASL 456
Query: 310 GALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
G+L G +H Y F ++ GTAL+D YAKCG+ ++A L+F +EK+ +TW+A
Sbjct: 457 GSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSA 516
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI G G +++ F++M+ +P+ + F +IL+AC ++G V +F SM DY
Sbjct: 517 MIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDY 576
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
PS KH+T +V++L+R G++++AL+ I KMP PD +GA C H + +I
Sbjct: 577 NFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIV 636
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
++ L+L A Y DGR W +
Sbjct: 637 IKK--MLDLHPDDASYYVLVSNLYASDGR-WNQ 666
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 202/485 (41%), Gaps = 47/485 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ + LRQ H + + L I T+L+S A +FD + ++
Sbjct: 50 LLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYL 109
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+ V++R N + + +++ R + + + K+ L L G+ +HC +V
Sbjct: 110 WKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLV 169
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K +D V L DMY + G+ + A KVF++ +N V+ W +I G K
Sbjct: 170 KVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRN----VVCWTSMIAGYVKNDLCE 224
Query: 217 KAVELFGMMPKKNV----------------------ASW-----------------VSLI 237
+ + LF M + NV W SL+
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL 284
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D +++ GD+ A +F + +V WTAMI G++ NG +AL++F +M ++ N
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+ S LS C + LE G VH +S + ALV MYAKC A VF
Sbjct: 345 TIASVLSGCGLIENLELGRSVHG-LSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEME 403
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
EKD++ W ++I G + +G +A+ F +M P+G ++ +AC G + +
Sbjct: 404 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGS 463
Query: 418 NFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ S++ + SV T +++ ++ G A I E + + W A+
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAMIGGYG 522
Query: 477 THKDT 481
DT
Sbjct: 523 KQGDT 527
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 177/409 (43%), Gaps = 52/409 (12%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
Q + H ++ + SS + T L+ I A +F+ + +L ++ +I G
Sbjct: 260 QGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYT 319
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
N +S F M + ++PN +T V + L LGR +H L +K G+ +D
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTN 378
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V L MY + + R A VF+ EK+ ++ WN +I+G S+ G + +A+ LF
Sbjct: 379 VANALVHMYAKCYQNRDAKYVFEMESEKD----IVAWNSIISGFSQNGSIHEALFLFHRM 434
Query: 223 --------------------------------------GMMPKKNVASWVSLIDGFMRKG 244
G + +V +L+D + + G
Sbjct: 435 NSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D + A +F+ + EK ++W+AMI G+ + G+ +L +F +ML + N+ T S LS
Sbjct: 495 DPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILS 554
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKD 361
AC G + G + + + D+ + T +VDM A+ G +E A ++ + D
Sbjct: 555 ACGHTGMVNEGKKYFSSMY-KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPD 613
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+ + A + G +H R++ KKM+ PD + +++ + S
Sbjct: 614 VRCFGAFLHGCGMHSRFDLGEIVIKKML--DLHPDDASYYVLVSNLYAS 660
>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Vitis
vinifera]
Length = 454
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 201/396 (50%), Gaps = 47/396 (11%)
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS-LSLLS--LGRGL 151
H++N LIRG + F ML RPN LT+P + K AS L L+ +G L
Sbjct: 30 HLYNSLIRGYLNFVEPHKTLLIFTHMLAHQARPNNLTFPSIIKKAASCLPSLAFMIGTPL 89
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H ++K G+ +D F++ L +Y +L K A VF+E
Sbjct: 90 HTHVIKRGLWHDLFIQTSLVVLYARLCKVSDACPVFEE---------------------- 127
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ + V S +++D + GD+ A LFE MPE+ VVSWT++INGF
Sbjct: 128 -------------ISRPCVVSSNAMLDALGKNGDMGSALXLFESMPERDVVSWTSIINGF 174
Query: 272 SQNGEAEKALAMFFQML------DAGVRANDFTVVSALSACAK---VGALEAGVRVHNYI 322
+N E+A+ F +M+ V+ N+ T VS LS+C VGAL G ++H YI
Sbjct: 175 GRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYI 234
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
N+ +GTAL+ +Y K G +E +F K + TW AMI LA +GR +QA+
Sbjct: 235 IRNEVEFTVFMGTALIALYGKTGCLENVMKIFNGMVVKGVCTWNAMISSLACNGREKQAL 294
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F+KM G PD F+A++TAC S V L L FF SMR D+ + P + H+ VV+L
Sbjct: 295 DLFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDL 354
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
L R G +++A FI MP PD + GAL AC+ H
Sbjct: 355 LGRAGLLEEATEFIKSMPFEPDATVLGALLGACKVH 390
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 199/364 (54%), Gaps = 37/364 (10%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ + A F++ P K+ + WN LI+G ++ G ++KA +LF +MP+KN SW
Sbjct: 146 YLRSYGVKAALAFFNKMPVKD----IASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201
Query: 234 VSLIDGFMRKGDLKKAGEL-------------------------------FEQMPEKGVV 262
++I G++ GDL+ A EL F++M K +V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+W +MI G+ +N AE L +F M+++ VR N ++ S L C+ + AL G ++H +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
S + T+L+ MY KCG++++A +F E KD++TW AMI G A HG +A+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKAL 381
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F KM +PD F+A++ AC ++G V L + +F SM+ ++ IE H+T V++L
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502
L R G++D+A++ I +MP TP I+G L ACR HK+ +A+ A ++ LNL A
Sbjct: 442 LGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARN--LLNLDPTSAT 499
Query: 503 SYCQ 506
Y Q
Sbjct: 500 GYVQ 503
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 28/298 (9%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T +++ ++ A IF KNL +N +I G EN + + F M+
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
VRPN L+ V ++LS L LGR +H L+ KS + D L MY + G A+
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
K+F E P K+ V+ WN +I+G ++ G RKA+ LF M K + ++V++I
Sbjct: 351 KLFLEMPRKD----VITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406
Query: 241 MRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
G + + F+ M E V +T +I+ + G ++A+++ +M
Sbjct: 407 NHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM-------- 458
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM--YAKCGNIEAAS 351
FT +A+ G L R+H + +F + + Y + NI AA+
Sbjct: 459 PFTPHAAI-----YGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 32/360 (8%)
Query: 174 YVQLGKTRGAFKVFDETPEKNK-----------------------------SESVLLWNV 204
YV+ G+ A +VFDE P +N +V+ WN
Sbjct: 34 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 93
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ G ++ G L A ++F MP +N+ SW +++ G+ D+ A ELF+ MPEK VVSW
Sbjct: 94 MVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSW 153
Query: 265 TAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
T MI+G++Q G + L +F M ++ V+ N+ T+VS LSACA + ALE G VH +I
Sbjct: 154 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFID 213
Query: 324 CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+ L +G AL+DMYAKCG + A +F K++ W A+I LA++G +
Sbjct: 214 KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDS 273
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F++M +G +P+ F+ +LTAC + G V F SM ++P VKH+ +V+
Sbjct: 274 VDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVD 333
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
+L R G +++A I MP PD +++GAL ACR HK +A+ SLNL+ Q+
Sbjct: 334 MLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQS 393
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 64/289 (22%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
V+ WN +I G K G + A +F MP++N SW +++ G+ G+L A E+F++MP
Sbjct: 23 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82
Query: 258 EKG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
G VV+W +M+ GF+++G A MF +M
Sbjct: 83 AIGRNVVTWNSMVTGFARHGLLPLARKMFDEM---------------------------- 114
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
V N +S N A++ Y+ +++ A +F EKD+++WT MI G A
Sbjct: 115 -PVRNLVSWN----------AMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQA 163
Query: 376 GRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY-FIEPSV 433
GRY+ ++ F+ M S +P+ +++L+AC L + R+ + FI+
Sbjct: 164 GRYQDTLELFRAMQTESNVQPNEVTMVSVLSAC-------ANLTALEEGRWVHAFID--- 213
Query: 434 KHHTV----------VVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
KH V ++++ ++ G+ D A+ N + + + W AL
Sbjct: 214 KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSL-DRKNVSAWNALI 261
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 6/191 (3%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSI 79
S+ N +T ++S + + ++ R +HA I H + ++ + LI +
Sbjct: 180 SNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRT 239
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
D A+ IF+ KN+ +N LI LA N + + + F M R +PN +T+ V +
Sbjct: 240 DIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTAC 299
Query: 140 ASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L+ GR + GV+ + + DM + G A ++ P +
Sbjct: 300 SHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP---MAPD 356
Query: 199 VLLWNVLINGC 209
V+++ L+ C
Sbjct: 357 VMVFGALLGAC 367
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 231/469 (49%), Gaps = 78/469 (16%)
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
TP +L ++N +++ LA+ F ++ F + + P+ T P V KS+ L + G
Sbjct: 8 TP-SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGE 66
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H VK+G+E+D++V L MY LGK KVFDE P+++ V+ WN LI+
Sbjct: 67 KVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRD----VVSWNGLISSY 122
Query: 210 SKIGYLRKAVELFGMMPKKN--------VASWVS-------------------------- 235
G A+ +F M +++ + S +S
Sbjct: 123 VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSV 182
Query: 236 -----LIDGFMRKGDLKKAGELFEQM-------------------------------PEK 259
L+D F + G L KA +F+ M P K
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VV WTAM+NG+ Q ++AL +F M AG+R ++F +VS L+ CA+ GALE G +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI+ N + +GTALVDMYAKCG IE A VF E KE+D +WT++I+GLA++G
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ + +M G D F+A+LTAC + G V F SM + ++P +H + +
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 440 VNLLSRVGQVDKALNFINKMPETPD---FVIWGALFCACRTHKDTKIAK 485
++LL R G +D+A I+KM D ++ +L A R + + KIA+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAE 471
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A +F+ K++ ++ ++ G + + F + F M +RP+ +
Sbjct: 229 IDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTG 288
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L G+ +H I ++ V D V L DMY + G A +VF E E++ +
Sbjct: 289 CAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS- 347
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
W LI G + G +A++L+ M + + ++V+++ G + + ++F
Sbjct: 348 ---WTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFH 404
Query: 255 QMPEK 259
M E+
Sbjct: 405 SMTER 409
>gi|356503596|ref|XP_003520593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial-like [Glycine max]
Length = 599
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 169/522 (32%), Positives = 256/522 (49%), Gaps = 63/522 (12%)
Query: 48 RQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
+Q+HAQ+I++ L F S IT I S SL A FD + KNLH +N +I G
Sbjct: 30 QQLHAQVIINGLHKKVFYGSNITNVYIQSGSL----PLAKKAFDQISVKNLHSWNTIISG 85
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
++ S + + F + + F K+ L LL GR LHCL +KSG+E D
Sbjct: 86 YSKRSLYGDVLQLFRRLRSEGNAVDGFNLVFSVKASQRLLLLHNGRLLHCLAIKSGLEGD 145
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
F + DMY +LG A K+F E+ S ++W +I G K ELF
Sbjct: 146 LFFAPAILDMYAELGSLDDARKLF----ERYSYRSSVMWGFMIKGYLNFSLESKVFELFS 201
Query: 224 MMPKK----------------------------------------NVASWVSLIDGFMRK 243
M NV S+ID +M+
Sbjct: 202 CMTNYFGFKWDAFTMEGLVRACANLLAGREGKASHGVCIKNNLLVNVCLLTSVIDMYMKC 261
Query: 244 GDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G A LFE+ + K VV W+A+ING ++ G+ +AL++F +ML+ + N T+
Sbjct: 262 GVTHYAFRLFEKANDLKDVVLWSAVINGCAKKGKFCEALSVFRRMLENSITPNPVTLAGV 321
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ AC+ VG+L+ G VH ++ N L T+LVDMY+KCG ++ A +F K++
Sbjct: 322 ILACSGVGSLKQGKSVHGFVVRNMVQLDVVNYTSLVDMYSKCGCVKTAYRIFCMMPAKNV 381
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKM-----MYSGTE-PDGTVFLAILTACWYSGQVKLA 416
++WTAMI G A+HG Y +A+ F +M + SG P+ F ++L+AC +SG V+
Sbjct: 382 VSWTAMINGFAMHGLYFKALSIFYQMTQNSCVISGKHVPNSITFTSVLSACSHSGMVQEG 441
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
L F+SM+ DY I P+ +H ++ +L+RVGQ D AL+F++ MP P + G L ACR
Sbjct: 442 LRIFNSMK-DYGISPTEEHCAYMIGVLARVGQFDAALSFLSNMPIKPGPNVLGVLLSACR 500
Query: 477 THKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTW 518
HK ++A+ ++ SL +S+ + DGR W
Sbjct: 501 FHKRVELAEEIAKTLSSLE---HNDLSWHASLSNIYSDGRMW 539
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 172/407 (42%), Gaps = 52/407 (12%)
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+LS + LH ++ +G+ F ++ ++Y+Q G A K FD+ KN WN
Sbjct: 25 ILSSAQQLHAQVIINGLHKKVFYGSNITNVYIQSGSLPLAKKAFDQISVKNLHS----WN 80
Query: 204 VLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLI------------------------- 237
+I+G SK ++LF + + N +L+
Sbjct: 81 TIISGYSKRSLYGDVLQLFRRLRSEGNAVDGFNLVFSVKASQRLLLLHNGRLLHCLAIKS 140
Query: 238 -------------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
D + G L A +LFE+ + V W MI G+ K +F
Sbjct: 141 GLEGDLFFAPAILDMYAELGSLDDARKLFERYSYRSSVMWGFMIKGYLNFSLESKVFELF 200
Query: 285 FQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
M + G + + FT+ + ACA + A G H N+ + + T+++DMY K
Sbjct: 201 SCMTNYFGFKWDAFTMEGLVRACANLLAGREGKASHGVCIKNNLLVNVCLLTSVIDMYMK 260
Query: 344 CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
CG A +F + + KD++ W+A+I G A G++ +A+ F++M+ + P+
Sbjct: 261 CGVTHYAFRLFEKANDLKDVVLWSAVINGCAKKGKFCEALSVFRRMLENSITPNPVTLAG 320
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
++ AC G +K + + + ++ V ++T +V++ S+ G V A MP
Sbjct: 321 VILACSGVGSLKQGKSVHGFVVRN-MVQLDVVNYTSLVDMYSKCGCVKTAYRIFCMMP-A 378
Query: 463 PDFVIWGALFCACRTH----KDTKIAKIALQSSCSLN-LSIPQAMSY 504
+ V W A+ H K I Q+SC ++ +P ++++
Sbjct: 379 KNVVSWTAMINGFAMHGLYFKALSIFYQMTQNSCVISGKHVPNSITF 425
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 174/285 (61%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G+LRKA +F + KN +W ++IDG+MR G + A ++F++MP+
Sbjct: 94 VMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPD 153
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMI GF + G E+ALA F +M +GV + ++SA++AC +GAL G+ V
Sbjct: 154 RDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWV 213
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 214 HRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNA 273
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G PDG F LTAC + G V+ +F M+ DY I P ++H+
Sbjct: 274 NESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGC 333
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+V+L SR G+++ A + MP P+ V+ G+L ACR H + I
Sbjct: 334 LVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTI 378
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 46/270 (17%)
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
RK + Q + +VSWT+ I S++G +A+ F M AG+ N T ++
Sbjct: 2 RKNHANPKIQKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIA 61
Query: 302 ALSACAKV--GALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGE 356
LSAC G+ G +H Y +C GL+ + +GTA++ MY+K G++ A LVF
Sbjct: 62 LLSACGNFPSGSEGLGYLLHGY-ACK-LGLERSHVMVGTAILGMYSKSGHLRKARLVFDY 119
Query: 357 TKEK-------------------------------DLLTWTAMIWGLAIHGRYEQAIQYF 385
++K DL++WTAMI G G +E+A+ +F
Sbjct: 120 IEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWF 179
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNL 442
++M SG PD ++ + AC G + L + S F +V+ +++L
Sbjct: 180 REMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDF----RNNVRVSNSLIDL 235
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALF 472
R G V+ A +KM E V W ++
Sbjct: 236 YCRCGCVEFARQVFDKM-EKRTVVSWNSVI 264
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 69/277 (24%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A+ +FD ++L + +I G + + ++ F M V P+ + +
Sbjct: 141 VDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAA 200
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G +H ++ + V L D+Y + G A +VFD+
Sbjct: 201 CTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDK--------- 251
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
M K+ V SW S+I GF G+ ++ F +M
Sbjct: 252 --------------------------MEKRTVVSWNSVIVGFAANGNANESLVYFRKMQR 285
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ GF+ +G T AL+AC+ VG +E G +
Sbjct: 286 E----------GFTPDG---------------------VTFTGALTACSHVGLVEEGFQY 314
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLV 353
+ +D+ + I LVD+Y++ G +E A +V
Sbjct: 315 FQMMK-HDYRISPRIEHYGCLVDLYSRAGRLEDAFIV 350
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/566 (26%), Positives = 264/566 (46%), Gaps = 76/566 (13%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H P + H+++ + + R++ + NLF + + + L + A L ++
Sbjct: 37 HPPPTYLL-NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTL-AHARLLSDME-- 92
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVA 140
++F T +++ +N +I G + + ++ +L+ SVRP+R+T + + +
Sbjct: 93 -ALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAAS 151
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
+L +LG+ HC I++ G +AFV L DMY ++ A + FDE KN
Sbjct: 152 ALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNT 211
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMP------- 226
+ W ++ G ++ G +A+E+F M
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAID 271
Query: 227 --------------------------------KKNVASWVSLIDGFMRKGDLKKAGELFE 254
NV +L+D + + +K A +F
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M K ++SWTA+I G+ QNG +E+A+ +F +M G+ +D+T+ S +S+CA + +LE
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G + H + + ALV +Y KCG+IE A +F E D ++WTA++ G A
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
GR ++ I F+KM+ G +PDG F+ +L+AC +G V+ ++F SM+ D+ I P
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
H+T +++L SR G++ +A FI +MP PD + WG L ACR D +I K A ++ +
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEI 571
Query: 495 NLSIPQAMSYCQTFMQQKGDGRTWRE 520
+ P + + KG W E
Sbjct: 572 DPQNPASYVLLCSMHAAKGQ---WNE 594
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 130/317 (41%), Gaps = 74/317 (23%)
Query: 130 LTYPFVSKSVASLSLLS-----LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGA 183
++ P S+ A LS + + LHC+I+++ ++ HL Y + G+ A
Sbjct: 1 MSRPLSSQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARA 60
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
+VFD P N + +N L++ + L LF M ++++
Sbjct: 61 RRVFDAMPHPN----LFTYNALLSTLAHARLLSDMEALFASMTQRDI------------- 103
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVS 301
VS+ A+I GFS G +A+ ++ +L D+ VR + T+ +
Sbjct: 104 ------------------VSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMST 145
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK------------------ 343
+ A + +G G + H I FG +G+ LVDMYAK
Sbjct: 146 MVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKN 205
Query: 344 -------------CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
C +E A +F ++D +TWT M+ G +G +A++ F++M +
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRF 265
Query: 391 SGTEPDGTVFLAILTAC 407
G D F +ILTAC
Sbjct: 266 QGIAIDQYTFGSILTAC 282
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 243/483 (50%), Gaps = 39/483 (8%)
Query: 10 TTAIAPTTNIKSSHK--PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
T + P+ S+ + PS + ++ S+ H S K RQ H++I+ L +S + T
Sbjct: 5 TCTLIPSRYYASAFEFDPSLALLQSLHFSVTH--KSLKLTRQSHSRILSLGLSQNSLLAT 62
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
+LI + ++ + ++ +FD KN+ ++N LI G A+N + F M V P
Sbjct: 63 KLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLP 122
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ T +SK + L L G+ +H ++ G D V + MY + G + KVF
Sbjct: 123 DDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVF 182
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
DE +N WNVLI G + G L +F M +NV SW ++I+G++ GD
Sbjct: 183 DEMTIRNSGS----WNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 238
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A LF M Q++D G+ N ++VS L AC+
Sbjct: 239 EALSLFRDM-----------------------------QVID-GIEPNRVSLVSVLPACS 268
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDLLTWT 366
L +G ++H + + + ++ AL+DMY+KCG++++A VF ++ KD ++W+
Sbjct: 269 SFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWS 328
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
+MI G +HG+ ++AI + KM+ +G PD + IL+AC SG V LN + S+ D
Sbjct: 329 SMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVIND 388
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
Y IEP+++ +V++L R GQ+D AL+FI MP P +WGAL H D ++ ++
Sbjct: 389 YGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQEL 448
Query: 487 ALQ 489
A +
Sbjct: 449 AYR 451
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 227/457 (49%), Gaps = 53/457 (11%)
Query: 79 IDYALSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+++ALSIF T + N+ FN +I G N + + M V P++ T+P K
Sbjct: 8 MNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIK 67
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
A L +L + + +H L+ K G+E D F+ L + Y++ G A F+E P ++
Sbjct: 68 --ACLDVLEIKK-IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD--- 121
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMM------PKK----------------------- 228
V+LWN ++NG ++IG +E F M P +
Sbjct: 122 -VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIH 180
Query: 229 ----------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
VA SLID + + ++ A E+FE M EK + SW ++ + Q G+ +
Sbjct: 181 GFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHD 240
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------ 332
L + +ML AG++ + TV + L AC+ + AL G +H Y+ + G G
Sbjct: 241 GTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVL 300
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ A++DMYAKCG++ A LVF KD+ +W MI G +HG +A++ F +M
Sbjct: 301 LKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQ 360
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+PD F+ +L+AC ++G V NF M+ Y + P+++H+T V+++L R GQ+D+A
Sbjct: 361 LKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 420
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
MP + V+W AL ACR HK +A++A Q
Sbjct: 421 YELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 457
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 157/380 (41%), Gaps = 57/380 (15%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
++++IH + L I + L++ +++A F+ +++ ++N ++ G A
Sbjct: 74 EIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 133
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ F+ + F M SV P+R T + A + L+ GR +H +K G +
Sbjct: 134 QIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 193
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN---------------------- 203
V L DMY + A ++F+ EK+ + WN
Sbjct: 194 VSNSLIDMYGKCKCIEDALEIFEMMREKD----IFSWNSIXSVHEQCGDHDGTLRLLDRM 249
Query: 204 -------------VLINGCSKIGYLRKAVELFGMM-------PKKNVASWV---SLIDGF 240
++ CS + L E+ G M K++ + ++ID +
Sbjct: 250 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 309
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G ++ A +FE+M K V SW MI G+ +G +AL MF +M + ++ ++ T V
Sbjct: 310 AKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 369
Query: 301 SALSACAKVGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFG 355
LSAC+ G + G N++ S D T ++DM + G + EA L
Sbjct: 370 GVLSACSHAGFVSQG---RNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALT 426
Query: 356 ETKEKDLLTWTAMIWGLAIH 375
E + + W A++ +H
Sbjct: 427 MPIEANPVVWRALLAACRLH 446
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 22/292 (7%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T T I+S+ R IH + + ++ LI K I+ AL IF+
Sbjct: 159 TVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 218
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
K++ +N + + + ML ++P+ +T V + + L+ L GR
Sbjct: 219 REKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGR 278
Query: 150 GLHCLIVKSGVEYDA------FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+H ++ SG+ D ++ + DMY + G R A VF E+ ++ V WN
Sbjct: 279 EIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF----ERMXNKDVASWN 334
Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
++I G GY +A+E+F M K + ++V ++ G + + QM K
Sbjct: 335 IMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSK 394
Query: 260 GVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
V+ +T +I+ + G+ ++A + M + AN + L+AC
Sbjct: 395 YDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM---PIEANPVVWRALLAAC 443
>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Brachypodium distachyon]
Length = 676
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 228/444 (51%), Gaps = 20/444 (4%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
N+ + + + T S+ ++K++D +FD K+ L+ G +N
Sbjct: 156 NVASWNTMVTGFFSAGQVNKALD----MFDAMPVKDSASLGTLVSGFIKNGRLHEAEELL 211
Query: 118 VFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVE-----YDAFVR--VH 169
LR++ + Y + + + +S R L +I + + F R V
Sbjct: 212 TKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVS 271
Query: 170 LADM---YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
M Y++ G A ++F+E P+K+ ++ WN +I G +K+ + +A +LF MP
Sbjct: 272 WNSMMTCYIRTGDVCSAREIFNEMPDKD----LVSWNTMIAGYTKVSDMEEAEKLFWEMP 327
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++ SW +I GF +KGD++ A F++MPE+G +SW MI+G+ QNG + A+ +F +
Sbjct: 328 DPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTK 387
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML+AG + T S L+ACA + L G ++H I F A AL+ MY++ G
Sbjct: 388 MLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIE-KSFLPDTATSNALMTMYSRGGA 446
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ A +F + +KDL++W A+I G HG +A+Q F+ M + P F+++L+A
Sbjct: 447 LTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSA 506
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +G V FD+M +Y I ++H+ +VNL+ R GQ+D AL IN MP PD
Sbjct: 507 CGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRS 566
Query: 467 IWGALFCACRTHKDTKIAKIALQS 490
+WGA AC K+ +A +A ++
Sbjct: 567 VWGAFLGACTAKKNELLAHMAAKA 590
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 31/310 (10%)
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A ++FDE P+++ + WN L+ + G + +A +LF MP++NVASW +++ GF
Sbjct: 113 AARRLFDEMPQRD----AVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFF 168
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFT 298
G + KA ++F+ MP K S +++GF +NG EAE+ L ++ D + +
Sbjct: 169 SAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYN 228
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKG----------AIGTALVDMYAKCGNIE 348
+ ++A +VG + R+ + I + K +++ Y + G++
Sbjct: 229 TL--IAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVC 286
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+A +F E +KDL++W MI G E+A + F +M +PD + I+
Sbjct: 287 SAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEM----PDPDIVSWNLIIRGFT 342
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDF 465
G V+ A FFD M E +++ + G D A+ KM E TPD
Sbjct: 343 QKGDVEHARGFFDRMP-----ERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDR 397
Query: 466 VIWGALFCAC 475
+ ++ AC
Sbjct: 398 HTFSSVLAAC 407
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 23/305 (7%)
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F +P ++V +W S + R D+ A F MP + VSW ++ +S++ +E L
Sbjct: 53 FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEH-L 111
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
A ++ D + + T + L A + G + ++ + + + A +V +
Sbjct: 112 AAARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNV----ASWNTMVTGF 167
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF-KKMMYSGTEPDGTVF 400
G + A +F KD + ++ G +GR +A + K++ + + +
Sbjct: 168 FSAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAY 227
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---------RVGQVDK 451
++ A G+V A FD + + + N++S R G V
Sbjct: 228 NTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCS 287
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF--M 509
A N+MP+ D V W + TK++ + + P +S+
Sbjct: 288 AREIFNEMPDK-DLVSWNTMIAGY-----TKVSDMEEAEKLFWEMPDPDIVSWNLIIRGF 341
Query: 510 QQKGD 514
QKGD
Sbjct: 342 TQKGD 346
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 223/444 (50%), Gaps = 44/444 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A+ +FD +++ +N +I ++ + + F M +P+ +T V S A
Sbjct: 352 AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCAR 411
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L G+ +H +V+SG D FV L DMY + G A +VF++ KN V+
Sbjct: 412 LLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKN----VVS 467
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--------------------------- 234
WN +I G S G + +ELF M ++ + +
Sbjct: 468 WNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYII 527
Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
SLID + + G++ A +F+ MP+ VVSW MI+G+ + G +AL
Sbjct: 528 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALV 587
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F M AGV+ + T S L AC+++ LE G +HN+I + + + AL+DMYA
Sbjct: 588 IFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYA 647
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG ++ A +F + E+D ++WT+MI HG+ +A++ F+KM S +PD FLA
Sbjct: 648 KCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLA 707
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL+AC ++G V +F+ M +Y +P+V+H++ +++LL RVG++ +A + + P+
Sbjct: 708 ILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDI 767
Query: 463 -PDFVIWGALFCACRTHKDTKIAK 485
D + LF AC HK + +
Sbjct: 768 REDVGLLSTLFSACHLHKKLDLGE 791
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 81/458 (17%)
Query: 107 NSHFQSCISHFVFMLRLSV----------RPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
N +C +F+F+ L V +P+ TYP V K+ + L + G+ +H ++
Sbjct: 266 NGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVI 325
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
KSG D V MY + A K+FDE PE++ V WN +I+ + G
Sbjct: 326 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERD----VASWNNVISCYYQDGQPE 381
Query: 217 KAVELF------GMMPKKNVASWV---------------------------------SLI 237
KA+ELF G P + V +L+
Sbjct: 382 KALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALV 441
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G L+ A E+FEQ+ K VVSW +MI G+S G+++ + +F +M + G+R
Sbjct: 442 DMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT 501
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+ S L AC++ L+ G +H YI N + ++L+D+Y KCGNI +A VF
Sbjct: 502 TLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM 561
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ ++++W MI G G Y +A+ F M +G +PD F ++L AC +LA+
Sbjct: 562 PKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPAC-----SQLAV 616
Query: 418 NFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
++ IE ++ + VV +++ ++ G VD+AL+ N++PE DFV W ++
Sbjct: 617 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIA 675
Query: 474 ACRTH------------------KDTKIAKIALQSSCS 493
A +H K K+ +A+ S+CS
Sbjct: 676 AYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 713
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 196/433 (45%), Gaps = 51/433 (11%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S KP +++T T +IS ++ ++IH +++ +++ L+ ++
Sbjct: 393 SGFKP-DSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
A +F+ KN+ +N +I G + +SCI F M +RP T + + +
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L LG+ +H I+++ VE D FV L D+Y + G A VF P+ N V+
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN----VV 567
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNVASWV 234
WNV+I+G K+G +A+ +F M K K + +++
Sbjct: 568 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 627
Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
+L+D + + G + +A +F Q+PE+ VSWT+MI + +G+A +AL
Sbjct: 628 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 687
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
+F +M + + + T ++ LSAC+ G ++ G N + ++G K A+ + L+D
Sbjct: 688 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQM-IAEYGFKPAVEHYSCLID 746
Query: 340 MYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+ + G + A + T + +D+ + + +H + + Q + ++ +PD
Sbjct: 747 LLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLI--EKDPDD 804
Query: 398 TVFLAILTACWYS 410
IL+ + S
Sbjct: 805 PSTYIILSNMYAS 817
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 231/468 (49%), Gaps = 48/468 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
ETH ++ N K+ ++IH + I ++ + ++ S S K++ A +FD
Sbjct: 20 ETHALA----CNQLKESQRIHGRAIK---LGTTILEPDIVCSYSASKALWDACKLFDEVP 72
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++ I A H + I F ML L+++PN+ ++ V S +L L+ GR
Sbjct: 73 NWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQ 132
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K G+E + FV + D Y +L A K F++T E N
Sbjct: 133 LHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPN---------------- 176
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
V S+ +LI G+++K A LF +MPE+ VVSW AMI+G
Sbjct: 177 -------------------VVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISG 217
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+SQ G E+A+ +F ML G N+ T A+SA A + AL G H
Sbjct: 218 YSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFD 277
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
IG +LV YAKCG++E + LVF +K++++W A+I G A HGR +AI +F+KM
Sbjct: 278 VFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQD 337
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVG 447
+G P+ L +L AC +SG V ++F+ R + EP + +HH +V+LLSR G
Sbjct: 338 TGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVE---EPGLLTPEHHACMVDLLSRSG 394
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+ +A F++++P P W AL CR H + ++ ++A + +L+
Sbjct: 395 RFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILALD 442
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 224/430 (52%), Gaps = 46/430 (10%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV +R A ++ ++ + F+ MLR ++RP+ T PF+ + A R H L+
Sbjct: 85 YNVTLRFFA-STRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLC 143
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ G++ L MY LG A +VFD P ++ V+ WN ++ + G
Sbjct: 144 RLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRD----VVSWNAMMKAYERAGMAA 199
Query: 217 KAVELF-GMMPKKNVA--------------------------SWV-------------SL 236
+F M+ + VA WV +L
Sbjct: 200 DVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSAL 259
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+ + + G++ +A +F+ + K VV+W AMI G++QNG +++A+A+F M G +
Sbjct: 260 VGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDK 319
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T+V LSACA VGALE G + Y S +GTALVDMY+KCG+++ A VFG+
Sbjct: 320 ITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGK 379
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKL 415
K+ TW A+I GLA +GR +AI+ F+ M G PD F+ +L+AC ++G +K
Sbjct: 380 LPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKD 439
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+F+S+ ++ I P ++H++ +V+LL+R G +++A +F+ K+P D V+ GAL AC
Sbjct: 440 GRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLAAC 499
Query: 476 RTHKDTKIAK 485
R K+ ++++
Sbjct: 500 RKCKNVEVSE 509
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 48/346 (13%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R HA + L A L++ S A +FD +++ +N +++
Sbjct: 136 RSAHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERA 195
Query: 108 SHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
F M+ +V PN +T V + L LGR L + + +E + V
Sbjct: 196 GMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLV 255
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L MY + G+ A +VFD K+ V+ WN +I G ++ G ++A+ LF
Sbjct: 256 GSALVGMYEKCGEMTEARRVFDGIAHKD----VVAWNAMITGYAQNGMSKEAIALFHSMR 311
Query: 223 --GMMPKK---------------------------------NVASWVSLIDGFMRKGDLK 247
G P K NV +L+D + + GDL
Sbjct: 312 QEGASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLD 371
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSAC 306
KA ++F ++P K +W A+I G + NG +A+ F M + G+R +D T + LSAC
Sbjct: 372 KAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSAC 431
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
G L+ G R N ++ ++F + I + +VD+ A+ G++E A
Sbjct: 432 VHAGLLKDGRRWFNSLT-SEFQIIPKIEHYSCMVDLLARAGHLEEA 476
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 17/251 (6%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD K++ +N +I G A+N + I+ F M + P+++T V + A+
Sbjct: 272 ARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAA 331
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ L LG L G+ + +V L DMY + G A +VF + P KN++
Sbjct: 332 VGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEAT---- 387
Query: 202 WNVLINGCSKIGYLRKAVELFGMMP-----KKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
WN LI G + G +A+ F +M + + +++ ++ + G LK F +
Sbjct: 388 WNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSL 447
Query: 257 PEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+ + ++ M++ ++ G E+A F + + +A+ + + L+AC K
Sbjct: 448 TSEFQIIPKIEHYSCMVDLLARAGHLEEAWD-FVEKIPG--KADAVMLGALLAACRKCKN 504
Query: 312 LEAGVRVHNYI 322
+E RV N I
Sbjct: 505 VEVSERVINRI 515
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 238/500 (47%), Gaps = 53/500 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + L+ S QLR+I AQ++LH S LI A +YA +
Sbjct: 34 ERGFLFLLKKCISVNQLREIQAQMLLH----SVEKPNFLIPKAVELGDFNYASFLLSVTE 89
Query: 91 PKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N + FN +IRGL N H + +S + M ++P+ TY FV + + +G
Sbjct: 90 EPNHYSFNYMIRGLTNIWNDH-EGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVG 148
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R +H + K G+E D + L MY + G A KVFDE ++ + WN +I+G
Sbjct: 149 RSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDR----VTVSWNSMISG 204
Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVS----------------------------- 235
S+ G + A++LF M ++ + + VS
Sbjct: 205 YSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLS 264
Query: 236 ------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
LI + + GDL A +F QM +K V+W AMI +SQNG++ +A +FF+M
Sbjct: 265 TFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEK 324
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
GV + T+ + LSAC VGALE G R+ + S + T LVDMY KCG+IE
Sbjct: 325 TGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEE 384
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF K+ TW AMI A G ++A+ F +M P F+ +L+AC +
Sbjct: 385 ALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQM---PVPPSDVTFIGVLSACVH 441
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V +F M + + P ++H+T +++LLSR G +D+A F+ + P PD ++
Sbjct: 442 AGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLA 501
Query: 470 ALFCACRTHKDTKIAKIALQ 489
A+ AC KD I + A++
Sbjct: 502 AILGACHKRKDVAIREKAMR 521
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 223/444 (50%), Gaps = 44/444 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A+ +FD +++ +N +I ++ + + F M +P+ +T V S A
Sbjct: 160 AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCAR 219
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L G+ +H +V+SG D FV L DMY + G A +VF++ KN V+
Sbjct: 220 LLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKN----VVS 275
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--------------------------- 234
WN +I G S G + +ELF M ++ + +
Sbjct: 276 WNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYII 335
Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
SLID + + G++ A +F+ MP+ VVSW MI+G+ + G +AL
Sbjct: 336 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALV 395
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F M AGV+ + T S L AC+++ LE G +HN+I + + + AL+DMYA
Sbjct: 396 IFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYA 455
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG ++ A +F + E+D ++WT+MI HG+ +A++ F+KM S +PD FLA
Sbjct: 456 KCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLA 515
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL+AC ++G V +F+ M +Y +P+V+H++ +++LL RVG++ +A + + P+
Sbjct: 516 ILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDI 575
Query: 463 -PDFVIWGALFCACRTHKDTKIAK 485
D + LF AC HK + +
Sbjct: 576 REDVGLLSTLFSACHLHKKLDLGE 599
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 246/530 (46%), Gaps = 80/530 (15%)
Query: 32 THIISLIHSSNSTKQLRQ---IHAQII---LHNLFASSRITTQLISSASLHKSIDYALSI 85
T ++SL+ + +K L+Q IH +I+ L N + L S L +S
Sbjct: 4 TKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQT 63
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSL 144
++ P ++ ++N L+ +N F + F +L ++P+ TYP V K+ + L
Sbjct: 64 IEN--PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ G+ +H ++KSG D V MY + A K+FDE PE++ V WN
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERD----VASWNN 177
Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------ 234
+I+ + G KA+ELF G P + V
Sbjct: 178 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 237
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L+D + + G L+ A E+FEQ+ K VVSW +MI G+S G+++ + +F
Sbjct: 238 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFR 297
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M + G+R T+ S L AC++ L+ G +H YI N + ++L+D+Y KCG
Sbjct: 298 RMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCG 357
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
NI +A VF + ++++W MI G G Y +A+ F M +G +PD F ++L
Sbjct: 358 NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 417
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQVDKALNFINKMPE 461
AC +LA+ ++ IE ++ + VV +++ ++ G VD+AL+ N++PE
Sbjct: 418 AC-----SQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPE 472
Query: 462 TPDFVIWGALFCACRTH------------------KDTKIAKIALQSSCS 493
DFV W ++ A +H K K+ +A+ S+CS
Sbjct: 473 R-DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 521
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 175/380 (46%), Gaps = 47/380 (12%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S KP +++T T +IS ++ ++IH +++ +++ L+ ++
Sbjct: 201 SGFKP-DSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
A +F+ KN+ +N +I G + +SCI F M +RP T + + +
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L LG+ +H I+++ VE D FV L D+Y + G A VF P+ N V+
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN----VV 375
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNVASWV 234
WNV+I+G K+G +A+ +F M K K + +++
Sbjct: 376 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 435
Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
+L+D + + G + +A +F Q+PE+ VSWT+MI + +G+A +AL
Sbjct: 436 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 495
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
+F +M + + + T ++ LSAC+ G ++ G N + ++G K A+ + L+D
Sbjct: 496 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQM-IAEYGFKPAVEHYSCLID 554
Query: 340 MYAKCGNIEAASLVFGETKE 359
+ + G + A + T +
Sbjct: 555 LLGRVGRLREAYEILQRTPD 574
>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
Length = 679
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 212/414 (51%), Gaps = 4/414 (0%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ ++ A +F+ +N+ + +IRG ++ ++ + F+ M R V+ N +T V
Sbjct: 211 YGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVV 270
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
A SL+ G +HCL+++ G D F+ L MY + G A +F +K+
Sbjct: 271 LDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKD- 329
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + A LF +MP+K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 330 ---IVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQ 386
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K ++W A+++ NG A+ F QM G R N LSA A + L G
Sbjct: 387 MPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQG 446
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
++ H Y + A+ +LV MYAKCG + A VF L+ +MI A H
Sbjct: 447 LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQH 506
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A + F +M Y G P+ FL ILTAC +G V+ N+F+SMR Y I+P+ H
Sbjct: 507 GLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDH 566
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+T +V+LL R G +++AL N MP+ W AL + H + +AK+A Q
Sbjct: 567 YTCMVDLLGRAGFLNEALEMTNSMPQKDYPDAWKALLSSSSLHSNLDLAKLAAQ 620
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 168/359 (46%), Gaps = 22/359 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF---MLRLSV 125
L++S I A +FD +++ + L+ A+ + S + FVF LR +
Sbjct: 47 LLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLAS--ARFVFDDMPLRNAA 104
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
N L ++ + + L C K+ V Y A + LA + G R A
Sbjct: 105 SWNALVSLYLRAGRPAAA-----HALFCKAPAKNAVSYGAII-TGLA----RAGMLREAQ 154
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
V+ E P + + + N +I G + G L A+ +F M ++V SW +++DG + G
Sbjct: 155 AVYWEMPPRWRDP--VGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYG 212
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ +A LFE MPE+ VVSWT+MI G+ ++G L +F M GV+ N T+ L
Sbjct: 213 TVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLD 272
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
CA+ ++ G +VH + F +G +L+ MY++ G++ A +F +KD+++
Sbjct: 273 GCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVS 332
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
W ++I G + E A FK M E D + +++ G ++ ++ F+ M
Sbjct: 333 WNSLITGYVQNDMIEDAHVLFKLM----PEKDAISWTSMVVGFANRGWMRESVELFEQM 387
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 35/298 (11%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ + G ++ A +LF MP ++V SW +L+ + G+L A +F+ MP +
Sbjct: 45 NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH--- 319
SW A+++ + + G A A+F + N + + ++ A+ G L V+
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCK----APAKNAVSYGAIITGLARAGMLREAQAVYWEM 160
Query: 320 ---------------NYISCNDFGLKGAI-----------GTALVDMYAKCGNIEAASLV 353
Y+ + G+ + +A+VD K G + A +
Sbjct: 161 PPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRL 220
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E+++++WT+MI G HG Y + F M G + + +L C + V
Sbjct: 221 FEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLV 280
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
M F E ++++ + SR G + A + + M + D V W +L
Sbjct: 281 DEGSQVHCLMIRMGFAEDIFLGDSLII-MYSRFGSMADARSLFSFMNQK-DIVSWNSL 336
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
N A +L+ + R+G ++ A +LF++MP + V+SWTA++ ++ G A +F
Sbjct: 40 NRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVF---- 95
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNI 347
+D L+ A ALV +Y + G
Sbjct: 96 ------------------------------------DDMPLRNAASWNALVSLYLRAGRP 119
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
AA +F + K+ +++ A+I GLA G +A + +M +P G+ A++
Sbjct: 120 AAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRDPVGSN--AMIWGY 177
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G++ +AL FD M V + +V+ L + G V +A MPE + V
Sbjct: 178 LRGGELGMALRVFDGM-----AARDVISWSAMVDGLCKYGTVSEARRLFEAMPER-NVVS 231
Query: 468 WGAL 471
W ++
Sbjct: 232 WTSM 235
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 146/346 (42%), Gaps = 25/346 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT + ++ ++ + Q+H +I + LI S S+ A S+F
Sbjct: 263 NMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLF 322
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
K++ +N LI G +N + +H +F L P + + S V +
Sbjct: 323 SFMNQKDIVSWNSLITGYVQNDMIED--AHVLFKL----MPEKDAISWTSMVVGFANRGW 376
Query: 147 LGRGLHC---LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ + + VK + + A + +A+ G A + F + ++ + + ++
Sbjct: 377 MRESVELFEQMPVKDEIAWAAVMSSLVAN-----GNYVSAVRWFCQMSQEGCRPNTVAFS 431
Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L++ + + L + ++ + A SL+ + + G L +A +F +
Sbjct: 432 CLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHP 491
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+++ +MI F+Q+G AE A +F +M G R N T + L+ACA+ G ++ G +
Sbjct: 492 SLIATNSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHG---Y 548
Query: 320 NYISC--NDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKD 361
NY + +G++ T +VD+ + G + A + +KD
Sbjct: 549 NYFESMRSVYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKD 594
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/477 (28%), Positives = 239/477 (50%), Gaps = 43/477 (9%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAEN 107
IH ++ + + + T L+ + K + A +F F KN ++ ++ G A+N
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F +M V N+ T+P + + +S+ G +H IVKSG + +V+
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L DMY + G + A + E + + V+ WN L+ G + G +A+ LF
Sbjct: 304 SALVDMYAKCGDLKNAKNML----ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHG 359
Query: 223 -------------------GMMPKKNVASWV-------------SLIDGFMRKGDLKKAG 250
G + K+V + +L+D + + GD+ A
Sbjct: 360 RNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+FE+M EK V+SWT+++ G++QN E++L +F M GV + F V S LSACA++
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G +VH + ++ +LV MYAKCG ++ A +F + KD++TWTA+I
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIV 539
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G A +G+ +++++ M+ SGT PD F+ +L AC ++G V +F M Y I+
Sbjct: 540 GYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIK 599
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P +H+ +++L R G++D+A +++M PD +W +L ACR H++ ++A+ A
Sbjct: 600 PGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERA 656
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 215/501 (42%), Gaps = 90/501 (17%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI----- 101
LR IH + S T QL++ S ++ A +FD K+ + +N +I
Sbjct: 51 LRSIHTTTAAS--YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108
Query: 102 --RGLAENSHFQSCISHF-------------------VFMLRLSVR-----PNRLTYPFV 135
R + F C F L S+R ++ T V
Sbjct: 109 VGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSV 168
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--ETPEK 193
+ +SL L+ G +H +VK+G E + FV L DMY + A +F E K
Sbjct: 169 LRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRK 228
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------------- 228
N +LW ++ G ++ G KAVE F M +
Sbjct: 229 NH----VLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284
Query: 229 --------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
NV +L+D + + GDLK A + E M + VVSW +++ GF ++
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G E+AL +F M ++ +D+T S L+ C VG++ VH I F +
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPK-SVHGLIIKTGFENYKLVS 402
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
ALVDMYAK G+++ A VF + EKD+++WT+++ G A + +E++++ F M +G
Sbjct: 403 NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN 462
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVD 450
PD + +IL+AC ++ L L F + D FI+ ++ V N L ++ G +D
Sbjct: 463 PDQFIVASILSAC---AELTL-LEFGKQVHLD-FIKSGLRWSQSVYNSLVAMYAKCGCLD 517
Query: 451 KALNFINKMPETPDFVIWGAL 471
A M + D + W A+
Sbjct: 518 DADAIFVSM-QVKDVITWTAI 537
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 122/279 (43%), Gaps = 16/279 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +H II ++ L+ + +D A ++F+ K++ + L+ G A+N
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + + F M V P++ + + A L+LL G+ +H +KSG+ + V
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY 503
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
L MY + G A +F K+ V+ W +I G ++ G R +++ + M
Sbjct: 504 NSLVAMYAKCGCLDDADAIFVSMQVKD----VITWTAIIVGYAQNGKGRNSLKFYDAMVS 559
Query: 226 --PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
+ + +++ L+ G + + + F+QM + G + MI+ F ++G+ +
Sbjct: 560 SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLD 619
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+A + QM V+ + S LSAC LE R
Sbjct: 620 EAKQLLDQM---DVKPDATVWKSLLSACRVHENLELAER 655
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/488 (29%), Positives = 245/488 (50%), Gaps = 45/488 (9%)
Query: 4 HVFNRLTTAIAPTTNIKSSHK-----PS-NNITETHIISLIHSSNSTKQLRQIHAQIILH 57
+V N L A N++ + K P ++++ I++ ++ + I Q+
Sbjct: 177 YVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQR 236
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
N+ AS+ + L + + A +F+ K++ ++ LI G +N ++ + F
Sbjct: 237 NIVASNSMIVLLGKMGQVME----AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 292
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
+ M +R + + V + A LS++ G+ +H L+++ G+E YV L
Sbjct: 293 IEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES-----------YVNL 341
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
N LI+ S G + A +LF + SW S+I
Sbjct: 342 Q------------------------NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMI 377
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G M+ G ++KA LF+ MPEK +VSW+A+I+G++Q+ + LA+F +M +R ++
Sbjct: 378 SGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDET 437
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+VS +SAC + AL+ G VH YI N + +GT L+DMY KCG +E A VF
Sbjct: 438 ILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM 497
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+EK + +W A+I GLA++G E+++ F +M +G P+ F+ +L AC + G V
Sbjct: 498 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 557
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F SM + IEP+VKH+ +V+LL R G +++A I MP PD WGAL AC+
Sbjct: 558 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKK 617
Query: 478 HKDTKIAK 485
H DT++ +
Sbjct: 618 HGDTEMGE 625
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 145/500 (29%), Positives = 259/500 (51%), Gaps = 52/500 (10%)
Query: 1 MKGHVFNRLTTAIAPTTNIKSSHKPSN--NITETHIISLIHSSNSTKQLRQIHAQIIL-- 56
MK N+L++A+ T N K + KP+ +I ETH+ H+ ++ KQ +I +Q+IL
Sbjct: 13 MKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHL----HNCHNLKQFNRILSQMILTG 68
Query: 57 --HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
+ FA+SR+ S+ S +DY+L IFD N ++N ++R +++ + +
Sbjct: 69 FISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKAL 126
Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
+ M++ +V P+ TYP V ++ A L G+ +H ++K G + D +V+ L +MY
Sbjct: 127 LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMY 186
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
G R A K+FDE+P + + WN ++ G K G + +A +F MP++N+ +
Sbjct: 187 AVCGNMRDARKLFDESPVLDS----VSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN 242
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
S+I + G + +A +LF +M EK +VSW+A+I+G+ QNG E+AL MF +M G+R
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA---------- 342
++ VVS LSACA + ++ G +H + G++ + AL+ MY+
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVI--RMGIESYVNLQNALIHMYSGSGEIMDAQK 360
Query: 343 ---------------------KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
KCG++E A +F EKD+++W+A+I G A H + +
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F +M PD T+ +++++AC + + +R + ++ +V T +++
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVILGTTLLD 479
Query: 442 LLSRVGQVDKALNFINKMPE 461
+ + G V+ AL N M E
Sbjct: 480 MYMKCGCVENALEVFNGMEE 499
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 12/240 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
ET ++S+I + L Q +HA I + L + + T L+ ++ AL +F+
Sbjct: 436 ETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFN 495
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
K + +N LI GLA N + + F M V PN +T+ V + + L+
Sbjct: 496 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE 555
Query: 148 GR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +I K G+E + + D+ + G A K+ + P + V W L+
Sbjct: 556 GRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP---MAPDVATWGALL 612
Query: 207 NGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
C K G R +L + P + V L + F KGD + E+ M ++GVV
Sbjct: 613 GACKKHGDTEMGERVGRKLIELQPDHD-GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVV 671
>gi|297727903|ref|NP_001176315.1| Os11g0114800 [Oryza sativa Japonica Group]
gi|255679719|dbj|BAH95043.1| Os11g0114800, partial [Oryza sativa Japonica Group]
Length = 483
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 189/346 (54%), Gaps = 8/346 (2%)
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
VAS+ +S G LHC ++K G D +VR L MY + G+ A K FDE P+KN
Sbjct: 141 VASV-FVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKN---- 195
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WN L+ A + MP++N++ W + I + G + +A LF +MP+
Sbjct: 196 AVSWNALVGAHRAAADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEASRLFREMPQ 255
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VVS ++I+G+++ G+ KAL +F +M + + + T+V L ACAK G LE G +
Sbjct: 256 RDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDI 315
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + G +G AL+DMYAKCG ++ A VF +D+ W AMI G ++HG
Sbjct: 316 HINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCS 375
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A++ F M EP+ FL +LTAC + G V +F+SM DY I P VKH+
Sbjct: 376 YEALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGC 432
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++++L R G++++A I + P T + V+W L ACR H +A
Sbjct: 433 MIDMLCRYGRIEEAYLMIKENPSTANSVLWKMLLAACRVHGHIDLA 478
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 23/250 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +F +++ N LI G + + + F M ++ P LT + +
Sbjct: 243 MDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGA 302
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L LG +H + G+ D V L DMY + G+ A KVFD ++
Sbjct: 303 CAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRD---- 358
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ WN +I G S G +A+ELF M + N +++ ++ G + + + F M
Sbjct: 359 ITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMI 418
Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E V + MI+ + G E+A M ++ N T S L L
Sbjct: 419 EDYRIVPDVKHYGCMIDMLCRYGRIEEAYLM--------IKENPSTANSVLWK-----ML 465
Query: 313 EAGVRVHNYI 322
A RVH +I
Sbjct: 466 LAACRVHGHI 475
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 7/175 (4%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH + + + + LI + +D A +FD + +++ +N +I G + +
Sbjct: 314 DIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHG 373
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVR 167
+ F M + PN +T+ V + + L++ GR + +I + D
Sbjct: 374 CSYEALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHY 430
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ DM + G+ A+ + E P S +LW +L+ C G++ A + F
Sbjct: 431 GCMIDMLCRYGRIEEAYLMIKENPSTANS---VLWKMLLAACRVHGHIDLAYKFF 482
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 241/510 (47%), Gaps = 47/510 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + L++ + + A +FD + +N +I G EN
Sbjct: 215 REVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFEN 274
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F+ ML+ V+PN +T V+ + LS ++ + +H L VK G D
Sbjct: 275 GECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFC 334
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY LG A VF + + + W +I+G K G+ KA+E++ +M
Sbjct: 335 NSLIQMYASLGMMGQARTVF----SRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390
Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
NV+ S+V +L++ + + + K
Sbjct: 391 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDK 450
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F+ MPEK VVSW++MI GF N +AL F ML A V+ N T ++AL+ACA
Sbjct: 451 AIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAA 509
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GAL +G +H ++ +G + AL+D+Y KCG A F KD+++W M
Sbjct: 510 TGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIM 569
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G HG E A+ +F +M+ G PD F+A+L AC G V F SM Y
Sbjct: 570 IAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYS 629
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I P++KH+ +V+LLSRVGQ+ +A NFIN+MP TPD +WGAL CR H+ ++ ++A
Sbjct: 630 IVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAA 689
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTW 518
+ L P Y D W
Sbjct: 690 KYVLELE---PNDAGYHVLLCDLYADAGIW 716
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 150/352 (42%), Gaps = 54/352 (15%)
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
M V+ G+T A++VF + PE++ V WNV++ G K G L +A++L+ G+ P
Sbjct: 138 MLVRFGETWHAWRVFAKMPERD----VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP 193
Query: 227 K-----------KNVASW------------------VSLIDGFM----RKGDLKKAGELF 253
V W V +++ M + GD+ A ++F
Sbjct: 194 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ M +SW AMI G +NGE L +F ML V+ N T+ S A + +
Sbjct: 254 DSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDIT 313
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H F A +L+ MYA G + A VF +D ++WTAMI G
Sbjct: 314 FAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYE 373
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+G ++A++ + M + PD + L AC G + + + + F+
Sbjct: 374 KNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMS--- 430
Query: 434 KHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCA-CRTHKD 480
+ VV N L ++ ++DKA+ MPE D V W ++ C H++
Sbjct: 431 --YVVVTNALLEMYAKSKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHRN 479
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 2/238 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+++ +R G+ A +F +MPE+ V SW M+ G+ + G E+AL ++ +M+ AGVR
Sbjct: 134 AMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP 193
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ +T L +C V G VH ++ F + + AL+ MYAKCG++ AA VF
Sbjct: 194 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
D ++W AMI G +G ++ F M+ +P+ ++ A +
Sbjct: 254 DSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDIT 313
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
A + V ++ + + +G + +A ++M +T D + W A+
Sbjct: 314 FAKEMH-GLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRM-DTRDAMSWTAMI 369
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 133/316 (42%), Gaps = 36/316 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+T L+ + K ID A+ +F K++ ++ +I G N + +F ML
Sbjct: 434 VTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA-D 492
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+PN +T+ + A+ L G+ +H +++ G+ Y+ ++ L D+YV+ G+T A+
Sbjct: 493 VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAW 552
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGF 240
F K+ V+ WN++I G G A+ F M K + ++V+L+
Sbjct: 553 AQFCAHGAKD----VVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCAC 608
Query: 241 MRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
R G + + ELF M +K + + M++ S+ G+ +A +M
Sbjct: 609 SRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEM-------- 660
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---------GAIGTALVDMYAKCGN 346
A GAL G R+H ++ + K L D+YA G
Sbjct: 661 -----PITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGI 715
Query: 347 IEAASLVFGETKEKDL 362
+ + V +EK L
Sbjct: 716 WDKLARVRKTMREKGL 731
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/487 (28%), Positives = 241/487 (49%), Gaps = 42/487 (8%)
Query: 5 VFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN-STKQLRQIHAQIILHNLFASS 63
+ + + T IA N SS SN IISL+H + + K ++ IH I
Sbjct: 2 IISPVPTIIANLPNPHSSSHDSN--LRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDP 59
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
+ +L+ ID+A+ +F N++++ LI G + I+ F M+R
Sbjct: 60 FVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRK 119
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
V + + K+ L G+ +H L++KSG+ D + + L ++Y
Sbjct: 120 HVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELY--------- 170
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
K G L A ++F MP+++V + +I
Sbjct: 171 --------------------------GKCGVLEDARKMFDGMPERDVVACTVMIGSCFDC 204
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G +++A E+F +M + V WT +I+G +NGE + L +F +M GV N+ T V L
Sbjct: 205 GMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVL 264
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
SACA++GALE G +H Y+ + + AL++MY++CG+I+ A +F + KD+
Sbjct: 265 SACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVS 324
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
T+ +MI GLA+HG+ +A++ F +M+ P+G F+ +L AC + G V L F+SM
Sbjct: 325 TYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESM 384
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD--- 480
+ IEP V+H+ +V++L RVG++++A +FI +M D + +L AC+ HK+
Sbjct: 385 EMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGM 444
Query: 481 -TKIAKI 486
K+AK+
Sbjct: 445 GEKVAKL 451
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/510 (28%), Positives = 252/510 (49%), Gaps = 54/510 (10%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
K +N+ +H++ S + + R++H QI+ S + T L+ + I+ +
Sbjct: 99 KECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSR 157
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
S+FD +N+ ++ +I G +N+ Q + F M + N++T + + L
Sbjct: 158 SVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLG 217
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L G+ LH ++K G+E +++ L D+Y + G R A VFDE ++ W
Sbjct: 218 ALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDEL----HGIDIVSWT 273
Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
+I G ++ G +A++LF ++P + V
Sbjct: 274 AMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKL 333
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
SL+D + + + A +FE + ++ VV+W ++I+ FSQNG A +AL +F
Sbjct: 334 GSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFH 393
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY------ISCNDFGLKGAIGTALVD 339
QM V + T+VS LSACA + AL+ G H Y +S N + +GTAL+
Sbjct: 394 QMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVY-----VGTALLT 448
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
YAKCG+ E+A ++F +K +TW+AMI G I G ++ F M+ + +P+ +
Sbjct: 449 FYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEI 508
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
F +IL+AC ++G + F + DY + PS KH+T +V+LL+R G++ +AL+FI KM
Sbjct: 509 FTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKM 568
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P PD ++GA C H + ++A++
Sbjct: 569 PVQPDVSLFGAFLHGCGLHSRFDLGELAIK 598
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 212/465 (45%), Gaps = 38/465 (8%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
++ L ++HA +++ L +T+L+S +D A +FD + + V+I
Sbjct: 16 DNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVII 75
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
R NS F+ + + M + + + V K+ + GR +HC IVK G
Sbjct: 76 RWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-N 134
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWN-- 203
D+FV L DMY + G+ + VFDE ++N + ++L+N
Sbjct: 135 PDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM 194
Query: 204 -------------VLINGCSKIGYLRKAVELFGMMPKKNV--ASWV--SLIDGFMRKGDL 246
+L++ C K+G L + L G + K + S++ +L+D + + G +
Sbjct: 195 REELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVV 254
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F+++ +VSWTAMI G++QNG E+AL +F Q V ND T+ S S+C
Sbjct: 255 RDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSC 314
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+++ L G +H +S + +LVD YAKC A VF ++D++ W
Sbjct: 315 SQLLNLNLGRSIHG-LSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWN 373
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++I + +G +A++ F +M PD +++L+AC +++ +F
Sbjct: 374 SIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKR 433
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ +V T ++ ++ G + A + M + V W A+
Sbjct: 434 GLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKST-VTWSAM 477
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
S C + L + +H Y+ + T LV +Y G ++ A LVF D L
Sbjct: 13 SLCDNINTL---MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFL 69
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+W +I ++ + + ++ +M E D VF +L AC
Sbjct: 70 SWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKAC 113
>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 908
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 222/428 (51%), Gaps = 21/428 (4%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP--------NRLTYP 133
AL +FD K+ + ++ G +N + + RLSV N L
Sbjct: 182 ALDVFDAMPAKDSASLSTMVSGFTKNGMLHE--AEELLTKRLSVTDMDKAVDAYNTLIVA 239
Query: 134 F-----VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+ S + ++ G+ H ++ + G E + + Y++ G A +F+
Sbjct: 240 YGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFN 299
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E P+K+ ++ WN +I+G ++ ++++ +LF MP + SW +I GFM+KG+ +
Sbjct: 300 EMPDKD----LVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEH 355
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A F++MPE+G +SW MI+G+ +NG ++ +F +ML+ G + T S L+ACA
Sbjct: 356 ARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACAS 415
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTA 367
+ L G ++H + F AI AL+ MY++CG + A +F + +KDL++W A
Sbjct: 416 IPMLGLGAQIHQLVE-KSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNA 474
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I HGR +A+Q FK+M + P F+++L+AC +G V FD+M +Y
Sbjct: 475 LIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEY 534
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I ++H+ +VNL+ R GQ+D AL IN MP PD +WGA AC K+ +A++A
Sbjct: 535 GIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMA 594
Query: 488 LQSSCSLN 495
+ ++N
Sbjct: 595 AKELSTIN 602
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 31/310 (10%)
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A ++FDE P+++ V+ WN L+ ++ G + +A LF MP++N ASW +++ GF
Sbjct: 119 AARRLFDEMPQRD----VVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFF 174
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKALAMFFQM--LDAGVRAND 296
G + KA ++F+ MP K S + M++GF++NG EAE+ L + +D V A +
Sbjct: 175 AAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYN 234
Query: 297 FTVVSALSACAKVGA------LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+V+ A A + G HN + F +++ Y K G++ +A
Sbjct: 235 TLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSA 294
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQA--IQYFKKMMYSGTEPDGTVFLAILTACW 408
+F E +KDL++W MI G Y QA ++ +K+ + +PD + I+
Sbjct: 295 RALFNEMPDKDLVSWNTMISG------YTQASDMKESEKLFWEMPDPDTVSWNLIIQGFM 348
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM---PETPDF 465
G+ + A FFD M E +++ + G ++ +KM E PD
Sbjct: 349 QKGEAEHARGFFDRM-----PERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDR 403
Query: 466 VIWGALFCAC 475
+ ++ AC
Sbjct: 404 HTFSSVLAAC 413
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 31/325 (9%)
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ G A LF +P ++V +W SL+ G R+ D + A E F+ MP + VSW ++
Sbjct: 48 RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAA 107
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+S + + LA ++ D + + T + L A A+ G ++ R+ + + +
Sbjct: 108 YSASPHPDH-LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRN---- 162
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
A +V + G + A VF KD + + M+ G +G +A + K +
Sbjct: 163 AASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRL- 221
Query: 391 SGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---- 444
S T+ D V + ++ A +G+ A FD + + +K N++S
Sbjct: 222 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 281
Query: 445 -----RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA-----KIALQSSCSL 494
+ G V A N+MP+ D V W + D K + ++ + S
Sbjct: 282 MICYIKAGDVCSARALFNEMPDK-DLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSW 340
Query: 495 NLSIPQAMSYCQTFMQQKGDGRTWR 519
NL I Q FM QKG+ R
Sbjct: 341 NLII-------QGFM-QKGEAEHAR 357
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 187/317 (58%), Gaps = 3/317 (0%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+ + G A + F+ TP ++ V+ W VL+ G G + A E+F MP +N W
Sbjct: 163 FAEKGDMAEARRWFEATPPGMRT--VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVW 220
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
S++ G+ + GD ++A +F+++P + +V+W A+I G++Q G +E+AL F ML V+
Sbjct: 221 SSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVK 280
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
++FT+ S LSACA++G+LE G +VH++I+ + L+DMYAKCG++ A +
Sbjct: 281 PDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYI 340
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + K+ W MI LA HG+ ++A+ F +M SG +P+ LA+L AC + G V
Sbjct: 341 FDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFV 400
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F+ + Y +E V+H+ +V+LL R G++ +A +N M E P+ VIWG+L
Sbjct: 401 DEGLQIFNKLDA-YGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLG 459
Query: 474 ACRTHKDTKIAKIALQS 490
ACR H+D +++++ +
Sbjct: 460 ACRVHRDAEMSRLVTEE 476
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 150/358 (41%), Gaps = 53/358 (14%)
Query: 133 PFVSKSVA--SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
P + K+ A S + L LG+ LH +KS D V + MY + G A + FDE
Sbjct: 58 PVLLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE- 116
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
MP +NV S+ +L+ G+ GD+ A
Sbjct: 117 ----------------------------------MPDRNVISYNALLAGYAVAGDMDGAL 142
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKV 309
LF M V+W +I GF++ G+ +A +F+ G+R +TV+ CA
Sbjct: 143 ALFGGMRSWTHVTWATLIRGFAEKGDMAEA-RRWFEATPPGMRTVVTWTVLVQGYVCA-- 199
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
G +E V + + + + +++V Y K G+ E A VF ++L+ W A+I
Sbjct: 200 GDMETAREVFDRMPARN----AFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALI 255
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G A G EQA++ F M+ +PD ++L+AC G ++ D + ++
Sbjct: 256 AGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHI- 314
Query: 430 EPSVKHHTV---VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
K+H V ++++ ++ G + A + M + W + A +H + A
Sbjct: 315 ---RKNHFVMNGLIDMYAKCGDLAHARYIFDSM-RWKNNECWNTMISALASHGQSDEA 368
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 153/382 (40%), Gaps = 63/382 (16%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+T T ++ + + R++ ++ N F S + T + + A ++FD
Sbjct: 187 VTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEE----ARAVFDR 242
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+NL +N LI G A+ + + F ML+ V+P+ T + + A L L G
Sbjct: 243 IPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQG 302
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H I + + + FV L DMY + G A +FD KN WN +I+
Sbjct: 303 KKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNE----CWNTMISA 358
Query: 209 CSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP----EKG 260
+ G +A+ LF M K N + ++++ G + + ++F ++ E G
Sbjct: 359 LASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVEAG 418
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC-----AKVGAL--E 313
V + +++ + G+ ++A + M + N+ S L AC A++ L E
Sbjct: 419 VEHYGCLVDLLGRAGKLKEAYEIVNNMSE---EPNEVIWGSLLGACRVHRDAEMSRLVTE 475
Query: 314 AGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+R+H++ S ND Y NI AAS
Sbjct: 476 EILRLHSFHASSNDA------------EYIMLANIMAAS--------------------- 502
Query: 373 AIHGRYEQAIQYFKKMMYSGTE 394
R+EQA Q +KM G E
Sbjct: 503 ---ERWEQAEQMRRKMARRGVE 521
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+GT +V MY KCG + A F E +++++++ A++ G A+ G + A+ F M S
Sbjct: 93 VGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMR-SW 151
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDS----MRFDYFIEPSVKHHTVVVNLLSRVGQ 448
T + ++ G + A +F++ MR +V TV+V G
Sbjct: 152 TH---VTWATLIRGFAEKGDMAEARRWFEATPPGMR-------TVVTWTVLVQGYVCAGD 201
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
++ A ++MP FV W ++ D + A+ + NL
Sbjct: 202 METAREVFDRMPARNAFV-WSSMVTGYFKAGDAEEARAVFDRIPTRNL 248
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 19/249 (7%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + T ++S S +Q +++H I ++ + + LI + + +A
Sbjct: 280 KP-DEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHAR 338
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IFD KN +N +I LA + + F M R +PN +T V +
Sbjct: 339 YIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGG 398
Query: 144 LLSLG----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+ G L V++GVE+ L D+ + GK + A+++ + E+
Sbjct: 399 FVDEGLQIFNKLDAYGVEAGVEHYGC----LVDLLGRAGKLKEAYEIVNNMSEEPNE--- 451
Query: 200 LLWNVLINGC-----SKIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
++W L+ C +++ L + + L N A ++ L + ++A ++
Sbjct: 452 VIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQM 511
Query: 253 FEQMPEKGV 261
+M +GV
Sbjct: 512 RRKMARRGV 520
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/486 (29%), Positives = 234/486 (48%), Gaps = 12/486 (2%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R T+ P + + P T + ++ + K LR +H++II +L +S +
Sbjct: 22 RKVTSSVPKLELDQKNSPKE--TAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGV 79
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
+L+ + + K + A +FD +N+ I NV+IR N ++ I F M V+P
Sbjct: 80 KLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKP 139
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ T+P V K+ + + +G+ +H K G+ FV L MY + G A V
Sbjct: 140 DHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 199
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGF--M 241
DE ++ V+ WN L+ G ++ A+E+ M ++ + SL+
Sbjct: 200 DEMSRRD----VVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 255
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
++ ++F +M +K +VSW MI + +N +A+ ++ M G + ++ S
Sbjct: 256 TTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITS 315
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
L AC AL G ++H YI + AL+DMYAKCG ++ A VF K +D
Sbjct: 316 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRD 375
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
+++WTAMI GR A+ F KM SG PD F+ L AC ++G ++ + F
Sbjct: 376 VVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 435
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
M Y I P ++H +V+LL R G+V +A FI +MP P+ +WGAL ACR H +T
Sbjct: 436 LMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNT 495
Query: 482 KIAKIA 487
I +A
Sbjct: 496 DIGLLA 501
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 235/469 (50%), Gaps = 49/469 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNL------FASSRITTQLISSASLHKSIDYALSIFD 87
+++ + SS S + LR +HA +I L F SR+ +L + H + YALS+F
Sbjct: 40 LLAAVDSSPSLRHLRHLHALLIRLPLPPRSLPFILSRLLRRLAALPPPHAPLPYALSVFA 99
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PF----VSKSVASL 142
+P + + L+R S F +LR + R L + PF ++KS A+
Sbjct: 100 ALSPPDPFLAAALLRFALLTQPPLSPFHLFSRILR-TARGGELPFLPFAFSPLAKSAAAA 158
Query: 143 SLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + H + + G + FV L Y+ G A KVFDE
Sbjct: 159 RSLPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDE------------ 206
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
M K+V W S++ + R D+ A E+F Q P K +
Sbjct: 207 -----------------------MVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDM 243
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
V+WTAM+ G++QN KAL +F +M G+ ++ ++ A+SACA++GA++ V
Sbjct: 244 VAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEI 303
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
N FG+ +G+ LVDMYAKCG I+ A VF +EK++ T+++M+ GLA HGR +A
Sbjct: 304 AEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREA 363
Query: 382 IQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
I FK M+ + P+ F+ +LTAC ++G V +F M+ Y I PS H+T +V
Sbjct: 364 IALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMV 423
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+LL R G VD+AL+ + M P +WGAL ACR H T++AK+A +
Sbjct: 424 DLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAE 472
>gi|77548396|gb|ABA91193.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125533163|gb|EAY79711.1| hypothetical protein OsI_34859 [Oryza sativa Indica Group]
gi|125575980|gb|EAZ17202.1| hypothetical protein OsJ_32710 [Oryza sativa Japonica Group]
Length = 537
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 189/346 (54%), Gaps = 8/346 (2%)
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
VAS+ +S G LHC ++K G D +VR L MY + G+ A K FDE P+KN
Sbjct: 195 VASV-FVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKN---- 249
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WN L+ A + MP++N++ W + I + G + +A LF +MP+
Sbjct: 250 AVSWNALVGAHRAAADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEASRLFREMPQ 309
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VVS ++I+G+++ G+ KAL +F +M + + + T+V L ACAK G LE G +
Sbjct: 310 RDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDI 369
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + G +G AL+DMYAKCG ++ A VF +D+ W AMI G ++HG
Sbjct: 370 HINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCS 429
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A++ F M EP+ FL +LTAC + G V +F+SM DY I P VKH+
Sbjct: 430 YEALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGC 486
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++++L R G++++A I + P T + V+W L ACR H +A
Sbjct: 487 MIDMLCRYGRIEEAYLMIKENPSTANSVLWKMLLAACRVHGHIDLA 532
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 23/250 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +F +++ N LI G + + + F M ++ P LT + +
Sbjct: 297 MDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGA 356
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L LG +H + G+ D V L DMY + G+ A KVFD ++
Sbjct: 357 CAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRD---- 412
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
+ WN +I G S G +A+ELF M + N +++ ++ G + + + F M
Sbjct: 413 ITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMI 472
Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E V + MI+ + G E+A M ++ N T S L L
Sbjct: 473 EDYRIVPDVKHYGCMIDMLCRYGRIEEAYLM--------IKENPSTANSVLWK-----ML 519
Query: 313 EAGVRVHNYI 322
A RVH +I
Sbjct: 520 LAACRVHGHI 529
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 7/175 (4%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH + + + + LI + +D A +FD + +++ +N +I G + +
Sbjct: 368 DIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHG 427
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVR 167
+ F M + PN +T+ V + + L++ GR + +I + D
Sbjct: 428 CSYEALELFDSM---KIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHY 484
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ DM + G+ A+ + E P S +LW +L+ C G++ A + F
Sbjct: 485 GCMIDMLCRYGRIEEAYLMIKENPSTANS---VLWKMLLAACRVHGHIDLAYKFF 536
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 260/574 (45%), Gaps = 72/574 (12%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
+ TA +++ PS +++ SS R++ + NL + + +
Sbjct: 27 ILTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSA 86
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR--LSVR 126
L + A L + ++ +F ++ +N L+ G + +V +LR VR
Sbjct: 87 L-ARAGLVRDME---RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVR 142
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+R+T V ++L +LGR +HC I++ G AF L DMY ++G A +V
Sbjct: 143 PSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRV 202
Query: 187 FDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKAV 219
FDE KN + + W ++ G ++ G +A+
Sbjct: 203 FDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEAL 262
Query: 220 ELFGMMP---------------------------------------KKNVASWVSLIDGF 240
++F M + NV +L+D +
Sbjct: 263 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMY 322
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ ++ A +F +M K ++SWTAMI G+ QNG E+A+ +F +M G++ +DFT+
Sbjct: 323 SKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLG 382
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S +S+CA + +LE G + H + + ALV +Y KCG+IE A +F E
Sbjct: 383 SVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH 442
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D ++WTA++ G A G+ ++ I F+KM+ G +PDG F+ +L+AC SG V ++F
Sbjct: 443 DQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYF 502
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
SM+ D+ I P H+T +++L SR G + +A FI +MP PD W L ACR D
Sbjct: 503 HSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562
Query: 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
+I K A ++ L+ P + + KG+
Sbjct: 563 MEIGKWAAENLLKLDPQNPASYVLLCSMHASKGE 596
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 18/247 (7%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP ++ T +IS + S ++ Q H ++ L ++ L++ SI+ A
Sbjct: 375 KP-DDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAH 433
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD + + + L+ G A+ + I F ML V+P+ +T+ V + +
Sbjct: 434 RLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493
Query: 144 LLSLGRG-LHCL-----IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
L+ GR H + IV Y + D+Y + G + A + + P +
Sbjct: 494 LVDKGRSYFHSMQQDHDIVPLDDHYTCMI-----DLYSRSGWLKQAEEFIKQMP---RCP 545
Query: 198 SVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
W L++ C G + + A E + +N AS+V L KG+ +L
Sbjct: 546 DAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRR 605
Query: 255 QMPEKGV 261
M ++ V
Sbjct: 606 GMRDRQV 612
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 219/412 (53%), Gaps = 35/412 (8%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
D AL++FD T ++ +N +I G + + F FML+ S ++P++ T V +
Sbjct: 228 DLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSA 287
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A+ L LG+ +H IV++ V+ V L MY + G A ++
Sbjct: 288 CANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRI------------ 335
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
VE+ G P NV ++ SL+DG+ + GD+ A +F+ +
Sbjct: 336 --------------------VEITGT-PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKH 374
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ VV+WTAMI G++QNG AL +F M+ G + N++T+ + LS + + +L+ G ++
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGR 377
H + ++G AL+ MY++ G+I+ A +F +D LTWT+MI LA HG
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGL 494
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+AI+ F+KM+ +PD ++ +L+AC + G V+ ++F+ M+ + IEP+ H+
Sbjct: 495 GNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYA 554
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+++LL R G +++A NFI MP PD V WG+L +CR HK +AK+A +
Sbjct: 555 CMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAE 606
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 190/462 (41%), Gaps = 77/462 (16%)
Query: 57 HNLFASSRITTQ-----LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
H LF + T ++S+ + ++D A +FD + + +I G F+
Sbjct: 68 HRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFK 127
Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
S + F+ M+ + P + T+ V S A+ L +G+ +H +VK G V L
Sbjct: 128 SAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLL 187
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
+MY + G + A VFD M K+ +
Sbjct: 188 NMYAKCGDSVMAKVVFDR-----------------------------------MRLKDTS 212
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF-FQMLDA 290
+W ++I M+ A LF+QM + +VSW ++I G+ G +AL F F + +
Sbjct: 213 TWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSS 272
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG----- 345
++ + FT+ S LSACA +L+ G ++H +I D + GA+G AL+ MYAK G
Sbjct: 273 SLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVA 332
Query: 346 ----------------------------NIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
+I+ A +F K +D++ WTAMI G A +G
Sbjct: 333 HRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHH 436
A+ F+ M+ G +P+ A+L+ + ++R + SV +
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGN- 451
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
++ + SR G + A N + D + W ++ + H
Sbjct: 452 -ALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 8/235 (3%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V L N L+N K G A LF MP K SW +++ + G+L A +F+++P+
Sbjct: 48 VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ 107
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
VSWT MI G++ G + A+ F +M+ +G+ FT + L++CA AL+ G +V
Sbjct: 108 PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKV 167
Query: 319 HNYISCNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
H+++ G G + A L++MYAKCG+ A +VF + KD TW MI
Sbjct: 168 HSFVV--KLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFC 225
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
+++ A+ F +M T+PD + +I+T + G AL F M ++P
Sbjct: 226 QFDLALALFDQM----TDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKP 276
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 36/301 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A +IFD +++ + +I G A+N + F M+R +PN T V
Sbjct: 362 IDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSV 421
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
++SL+ L G+ LH + ++ V L MY + G + A K+F+ +
Sbjct: 422 ISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDT-- 479
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
L W +I ++ G +A+ELF M + N+ ++V ++ G +++ F
Sbjct: 480 -LTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFN 538
Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M E + MI+ + G E+A M + + S LS+C
Sbjct: 539 LMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNM---PIEPDVVAWGSLLSSC--- 592
Query: 310 GALEAGVRVHNYISCN----------DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
RVH Y+ D GA AL + + CG E A+ V K+
Sbjct: 593 -------RVHKYVDLAKVAAEKLLLIDPNNSGAY-LALANTLSACGKWEDAAKVRKSMKD 644
Query: 360 K 360
K
Sbjct: 645 K 645
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 14/261 (5%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+ KP NN T ++S+I S S +Q+HA I +S + LI+ S S
Sbjct: 404 IREGPKP-NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGS 462
Query: 79 IDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
I A IF+H ++ + +I LA++ I F MLR++++P+ +TY V
Sbjct: 463 IKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLS 522
Query: 138 SVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ + L+ G+ L+ +E + + D+ + G A+ P +
Sbjct: 523 ACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE--- 579
Query: 197 ESVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
V+ W L++ C Y+ + A E ++ N ++++L + G + A ++
Sbjct: 580 PDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVR 639
Query: 254 EQMPEKGV-----VSWTAMIN 269
+ M +K V SW + N
Sbjct: 640 KSMKDKAVKKEQGFSWVQIKN 660
>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
Length = 788
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 250/495 (50%), Gaps = 14/495 (2%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI +++ +T + +S + ++ +Q HA +++ L
Sbjct: 202 MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQSHALAVVNGL 261
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ ++YA +FD K++ +N+LI G + + I
Sbjct: 262 ELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLISGYVQQGLVEDAIRMCKL 321
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M ++ + +T + + A LG+ + C ++ E D + DMY + G
Sbjct: 322 MRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGS 381
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A KVFD T +K+ ++LWN L+ ++ G +A+ LF M + NV +W
Sbjct: 382 IVDAKKVFDSTVQKD----LILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNL 437
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVV----SWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A ++F QM G+V SWT M+NG QNG +E+A+ +M + G
Sbjct: 438 IILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYG 497
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAA 350
+R N F++ ALSACA + +L G VH YI N +I T+LVDMYAKCG+I A
Sbjct: 498 MRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKA 557
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +L + AMI A++G E+A+ ++ + G +PD F IL+AC ++
Sbjct: 558 EKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHA 617
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + A+ F M + ++P ++H+ ++V+LL+ G+ +KAL + +MP PD + +
Sbjct: 618 GDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQS 677
Query: 471 LFCACRTHKDTKIAK 485
L C T++ +
Sbjct: 678 LLATCNKEHKTELVE 692
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/455 (26%), Positives = 209/455 (45%), Gaps = 46/455 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 46 QQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 105
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML+ + P+ P V K+ +L GRG+H + KSG++ F
Sbjct: 106 RMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVF 165
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ L
Sbjct: 166 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLMCDM 221
Query: 223 ---GMMPKKNVAS---------------------------------WVSLIDGFMRKGDL 246
G+ P + S S+++ + + G +
Sbjct: 222 REEGVEPTRVTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLV 281
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M K VV+W +I+G+ Q G E A+ M M ++ + T+ + +S
Sbjct: 282 EYAEMVFDRMVGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTA 341
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ + G V Y + F + + VDMYAKCG+I A VF T +KDL+ W
Sbjct: 342 ARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWN 401
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F +M P+ + I+ + +GQV A F M+
Sbjct: 402 TLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSS 461
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+ P++ T ++N L + G ++A++++ KM E
Sbjct: 462 GIV-PTIVSWTTMMNGLVQNGCSEEAIHYLRKMQE 495
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 2/240 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M + GV
Sbjct: 169 SLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEP 228
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
TV + LSA A +G +E G + H N L +GT++++ Y K G +E A +VF
Sbjct: 229 TRVTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVF 288
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD++TW +I G G E AI+ K M + D +++ + K
Sbjct: 289 DRMVGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSK 348
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L + E + + V++ ++ G + A + + D ++W L A
Sbjct: 349 LGKE-VQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQ-KDLILWNTLLAA 406
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 222/428 (51%), Gaps = 21/428 (4%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP--------NRLTYP 133
AL +FD K+ + ++ G +N + + RLSV N L
Sbjct: 146 ALDVFDAMPAKDSASLSTMVSGFTKNGMLHE--AEELLTKRLSVTDMDKAVDAYNTLIVA 203
Query: 134 F-----VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+ S + ++ G+ H ++ + G E + + Y++ G A +F+
Sbjct: 204 YGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFN 263
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E P+K+ ++ WN +I+G ++ ++++ +LF MP + SW +I GFM+KG+ +
Sbjct: 264 EMPDKD----LVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEH 319
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A F++MPE+G +SW MI+G+ +NG ++ +F +ML+ G + T S L+ACA
Sbjct: 320 ARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACAS 379
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTA 367
+ L G ++H + F AI AL+ MY++CG + A +F + +KDL++W A
Sbjct: 380 IPMLGLGAQIHQLVE-KSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNA 438
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I HGR +A+Q FK+M + P F+++L+AC +G V FD+M +Y
Sbjct: 439 LIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEY 498
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I ++H+ +VNL+ R GQ+D AL IN MP PD +WGA AC K+ +A++A
Sbjct: 499 GIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMA 558
Query: 488 LQSSCSLN 495
+ ++N
Sbjct: 559 AKELSTIN 566
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 31/310 (10%)
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A ++FDE P+++ V+ WN L+ ++ G + +A LF MP++N ASW +++ GF
Sbjct: 83 AARRLFDEMPQRD----VVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFF 138
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKALAMFFQM--LDAGVRAND 296
G + KA ++F+ MP K S + M++GF++NG EAE+ L + +D V A +
Sbjct: 139 AAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYN 198
Query: 297 FTVVSALSACAKVGA------LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+V+ A A + G HN + F +++ Y K G++ +A
Sbjct: 199 TLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSA 258
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQA--IQYFKKMMYSGTEPDGTVFLAILTACW 408
+F E +KDL++W MI G Y QA ++ +K+ + +PD + I+
Sbjct: 259 RALFNEMPDKDLVSWNTMISG------YTQASDMKESEKLFWEMPDPDTVSWNLIIQGFM 312
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM---PETPDF 465
G+ + A FFD M E +++ + G ++ +KM E PD
Sbjct: 313 QKGEAEHARGFFDRMP-----ERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDR 367
Query: 466 VIWGALFCAC 475
+ ++ AC
Sbjct: 368 HTFSSVLAAC 377
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 31/325 (9%)
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ G A LF +P ++V +W SL+ G R+ D + A E F+ MP + VSW ++
Sbjct: 12 RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAA 71
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+S + + LA ++ D + + T + L A A+ G ++ R+ + + +
Sbjct: 72 YSASPHPDH-LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRN---- 126
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
A +V + G + A VF KD + + M+ G +G +A + K +
Sbjct: 127 AASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRL- 185
Query: 391 SGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---- 444
S T+ D V + ++ A +G+ A FD + + +K N++S
Sbjct: 186 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 245
Query: 445 -----RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA-----KIALQSSCSL 494
+ G V A N+MP+ D V W + D K + ++ + S
Sbjct: 246 MICYIKAGDVCSARALFNEMPDK-DLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSW 304
Query: 495 NLSIPQAMSYCQTFMQQKGDGRTWR 519
NL I Q FM QKG+ R
Sbjct: 305 NLII-------QGFM-QKGEAEHAR 321
>gi|302142563|emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 206/400 (51%), Gaps = 16/400 (4%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
ML + PN +T + ASL L G LH + VK G D V L DMY + G+
Sbjct: 1 MLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGE 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A +VFD +K+ V WN +I G + GY KA +LF M + NV +W +
Sbjct: 61 LEDARRVFDMILKKD----VYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNA 116
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDA 290
+I G+++ GD +A +LF +M + G++ SW ++I G+ QNG KAL +F QM
Sbjct: 117 MISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSF 176
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+R N T++S L ACA + A + +H I + G + ++ L+D YAK GNI A
Sbjct: 177 CIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYA 236
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+F KD+++W ++I G +HG + A+ F +M G +P FL+I+ A S
Sbjct: 237 QTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLS 296
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V F SM DY I P ++HH+ +++LL R G++ +A+ FI M PD IW A
Sbjct: 297 GMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAA 356
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510
L A + H + +A A C L L P S Q +Q
Sbjct: 357 LLTASKIHGNIGLAIRA--GECLLELE-PSNFSIHQQILQ 393
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 168/372 (45%), Gaps = 23/372 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T T IS S + K+ ++H+ + + LI S ++ A +F
Sbjct: 9 NGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVF 68
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLL 145
D K+++ +N +I G + + F+ M V PN +T+ +S + +
Sbjct: 69 DMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQN---- 124
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKTRGAFKVFDETPEKN-KSES 198
G + + +E D ++ A Y+Q G A +F + + S
Sbjct: 125 --GDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNS 182
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFE 254
V + ++L C+ + +K E+ G + ++N+ S +S LID + + G++ A +F+
Sbjct: 183 VTMLSIL-PACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQ 241
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+ K ++SW ++I G+ +G ++ AL +F QM GV+ + T +S + A + G ++
Sbjct: 242 GISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDK 301
Query: 315 GVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWG 371
G +V + + D+ + + +A++D+ + G + EA + E D W A++
Sbjct: 302 GKQVFSSMM-EDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTA 360
Query: 372 LAIHGRYEQAIQ 383
IHG AI+
Sbjct: 361 SKIHGNIGLAIR 372
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/465 (30%), Positives = 225/465 (48%), Gaps = 62/465 (13%)
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
D AL +F ++L +N LI GL+ H + F +LR VR
Sbjct: 65 DAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVR 124
Query: 127 PN------RLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-------VEYDAFVRVHLADM 173
RL + ++ + ++L LG L V + D R +
Sbjct: 125 HGLLADAIRLFHQMPERNHVTYTVL-LGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSG 183
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y Q G+ A +FDE P++N V+ W +I+G ++ G + A +LF +MP +N SW
Sbjct: 184 YCQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSW 239
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--------- 284
+++ G+++ G ++ A +LF MP+ V + AM+ GF Q+G + A AMF
Sbjct: 240 TAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG 299
Query: 285 ----------------------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+ML G+R N + +S L+ CA + + G +H +
Sbjct: 300 TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
F +AL+ MY KCGN++ A VF + KD++ W +MI G A HG E+A+
Sbjct: 360 LRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEAL 419
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F + + PDG ++ +LTAC Y+G+VK F+SM + I H++ +V+L
Sbjct: 420 GIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDL 479
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
L R G VD+AL+ IN MP PD +IWGAL ACR HK+ +IA++A
Sbjct: 480 LGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVA 524
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 18/251 (7%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+ G GA FD P + + +N LI G + A+ LF MP +++ S+
Sbjct: 28 VRAGNIEGARAAFDAMPLRTTAS----YNALIAGYFRNHLPDAALGLFHRMPSRDLGSYN 83
Query: 235 SLIDGF-MRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+LI G +R+ L A +P VVS+T+++ G+ ++G A+ +F QM +
Sbjct: 84 ALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPER-- 141
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
N T L G + ++ + + D + TA++ Y + G I A
Sbjct: 142 --NHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVAR----TAMLSGYCQAGRITEARA 195
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
+F E ++++++WTAMI G A +G+ A + F+ M + + + A+L +G
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVM----PDRNEVSWTAMLVGYIQAGH 251
Query: 413 VKLALNFFDSM 423
V+ A + F++M
Sbjct: 252 VEDAEDLFNAM 262
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H +D A ++F+ ++ ++ +I+ +N +S F ML +RPN ++ +
Sbjct: 280 HGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISI 339
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
A+L+ GR LH +++ + D F L MY++ G A +VF+ K+
Sbjct: 340 LTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKD- 398
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
V++WN +I G ++ G +A+ +F + +A +++ ++ G +K+ E
Sbjct: 399 ---VVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGRE 455
Query: 252 LFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
+F M G ++ M++ + G ++AL + M
Sbjct: 456 IFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNM 496
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 122/311 (39%), Gaps = 24/311 (7%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ +V+ N I + G + A F MP + AS+ +LI G+ R A LF +
Sbjct: 14 APAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHR 73
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP + + S+ A+I G S A + FT S L + G L
Sbjct: 74 MPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFT--SLLRGYVRHGLLADA 131
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+R+ + + + T L+ + G + A +F E +KD++ TAM+ G
Sbjct: 132 IRLFHQMPERNH----VTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQA 187
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
GR +A F +M P V + A+++ +G+V LA F+ M P
Sbjct: 188 GRITEARALFDEM------PKRNVVSWTAMISGYAQNGKVILARKLFEVM-------PDR 234
Query: 434 KHHTVVVNLLSRV--GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491
+ L+ + G V+ A + N MP+ P A+ H AK +
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHP-VAACNAMMVGFGQHGMVDAAKAMFERM 293
Query: 492 CSLNLSIPQAM 502
C+ + AM
Sbjct: 294 CARDDGTWSAM 304
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 216/422 (51%), Gaps = 37/422 (8%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
H+S+ +A ++FD +++ + L+ G A F M+ ++PN +T
Sbjct: 189 HRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVA 248
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V ++ + LL+ GR ++ + GV
Sbjct: 249 VVSAMGQMGLLAFGRMVYRYVADGGV---------------------------------- 274
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
SV L N LI+ K G A E+F M K+V SW ++++ + + GDL+ A LF+
Sbjct: 275 -GRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFD 333
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
MP + VSW+ MI +SQ + E+A+ +F M++ GV + +VS LSACA++G L+
Sbjct: 334 DMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDL 393
Query: 315 GVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
G ++ NY+ L +G A +D+YAKCG+ +AAS +F E E+++++W +MI A
Sbjct: 394 GRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHA 453
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG+ E+ ++ F+++ + PD FL +L+AC +SG V +F M+ Y IEP
Sbjct: 454 VHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKS 513
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493
+H+ +++LL ++G +++A MP D WGAL ACR + + +I + A
Sbjct: 514 EHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQ 573
Query: 494 LN 495
LN
Sbjct: 574 LN 575
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/494 (22%), Positives = 205/494 (41%), Gaps = 102/494 (20%)
Query: 26 SNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYA 82
+ N+ TH +++L+ S S + Q+HA + + L A ++L++ +L +D+A
Sbjct: 31 NRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDHA 90
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+I + N ++ ++R + F ++R S+ + T F K+ AS
Sbjct: 91 AAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASE 150
Query: 143 SL---LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
S G G+HC+ +K G H+A +SV
Sbjct: 151 HEHHSPSGGEGVHCVALKWG---------HVA-------------------------QSV 176
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L+ N L++ + L A LF MP ++V SW +L+DG+ R+G +A +F +M
Sbjct: 177 LVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVA 236
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
G G++ N+ T+V+ +SA ++G L G V+
Sbjct: 237 G------------------------------GLQPNEVTLVAVVSAMGQMGLLAFGRMVY 266
Query: 320 NYISCNDFGLKGAIGTALVDM-------------------------------YAKCGNIE 348
Y++ G + AL+DM YAKCG++E
Sbjct: 267 RYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLE 326
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+A+ +F + ++ ++W+ MI + + E+A++ FK M+ G EP +++L+AC
Sbjct: 327 SAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACA 386
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
G + L +D+ +V +++ ++ G D A +M E + V W
Sbjct: 387 QLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAER-NVVSW 445
Query: 469 GALFCACRTHKDTK 482
++ A H ++
Sbjct: 446 NSMIMAHAVHGQSE 459
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 52/291 (17%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E +I + R++ + + ++++ T ++++ + ++ A +FD
Sbjct: 281 ENALIDMFGKFGCAASAREVFDSMAVKDVYS----WTTMVNAYAKCGDLESAARLFDDMP 336
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N ++ +I ++ + + + F M+ V P V + A L L LGR
Sbjct: 337 RRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRW 396
Query: 151 LHCLIVKSGVEYDAFVRVHLA----DMYVQLGKTRGAFKVFDETPEKN------------ 194
++ V SG A + V+L D+Y + G A K+F E E+N
Sbjct: 397 IYDNYVISG---KAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHA 453
Query: 195 ---KSESVL----------------LWNVLINGCSKIG-------YLRKAVELFGMMPKK 228
+SE VL + L++ CS G Y ++ ++G+ PK
Sbjct: 454 VHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKS 513
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAE 278
+ +ID + G L++A E+ + MP E W A++N G E
Sbjct: 514 E--HYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVE 562
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 225/436 (51%), Gaps = 75/436 (17%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
+P+ Y + +S LL G+ +H I SG F+ L +MY + + K
Sbjct: 67 KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRK---------------------------- 217
+FDE PE++ + WN+LI+G +K+G L++
Sbjct: 127 LFDEMPERD----LCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDR 182
Query: 218 ---AVELFGMMPKKN--------VAS--------------------------------WV 234
A+ELF MM + + V+S W
Sbjct: 183 PNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWS 242
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L D + + G +++A +F++M ++ +V+WTAMI+ + Q+G ++ +F +L +G+R
Sbjct: 243 ALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRP 302
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N+FT L+ACA + E G +VH Y++ F +ALV MY+KCGN+ +A VF
Sbjct: 303 NEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVF 362
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
ET + DL +WT++I G A +G+ ++AI+YF+ ++ SGT+PD F+ +L+AC ++G V
Sbjct: 363 KETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVD 422
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L++F S++ Y + + H+ +++LL+R GQ D+A N I+KM PD +W +L
Sbjct: 423 KGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482
Query: 475 CRTHKDTKIAKIALQS 490
CR H + K+A+ A ++
Sbjct: 483 CRIHGNLKLAQRAAEA 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 124/279 (44%), Gaps = 16/279 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH I+ L + + + L SI+ A IFD +++ + +I ++
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F +LR +RPN T+ V + A+ + LG+ +H + + G + +F
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA 342
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY + G A +VF ETP+ + + W LI G ++ G +A+ F ++ K
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPD----LFSWTSLIAGYAQNGQPDEAIRYFELLVK 398
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA-----MINGFSQNGEAE 278
++V ++ G + K + F + E+ ++ TA +I+ +++G+ +
Sbjct: 399 SGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+A + +M ++ + F S L C G L+ R
Sbjct: 459 EAENIISKM---SMKPDKFLWASLLGGCRIHGNLKLAQR 494
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 213/424 (50%), Gaps = 43/424 (10%)
Query: 79 IDYALSIFDHFTPKNLHI--FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+D A +F+ N I +N ++ G + + + F M V PN +T V
Sbjct: 291 LDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVM 350
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
+ A L+LGR + I ++ + + V DM+V+ G+ A +FD
Sbjct: 351 SACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDN------- 403
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
M K++V SW ++IDG+ + + A ++F+ M
Sbjct: 404 ----------------------------MEKRDVVSWTTIIDGYAKMSEHGIARDIFDSM 435
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMF--FQMLDAGVRANDFTVVSALSACAKVGALEA 314
P K + +W +I+G+ Q+G ++ALA+F Q+ +G R + T++S LSACA++GA++
Sbjct: 436 PRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDI 495
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G +H YI L + T+L+DMY+K G++E A VF KD+ W+AMI GLA+
Sbjct: 496 GEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAM 555
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
HGR E AI+ F M + +P+ F +L AC +SG V FD M Y + P K
Sbjct: 556 HGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTK 615
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
H++ +V++L R G +++AL FI MP P +WGAL AC H + ++A + +CS
Sbjct: 616 HYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELA----EKACSR 671
Query: 495 NLSI 498
L I
Sbjct: 672 LLEI 675
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 212/481 (44%), Gaps = 106/481 (22%)
Query: 36 SLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+L S KQL+QIHAQ++ LH+ +A+S + T ++ S ++DYA +FD
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTA--AAFSSFSALDYARKVFDQIPQ 201
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRG 150
NL+ +N+LIR LA +S + F+ ML S PN+ T+P + K+VA +G+
Sbjct: 202 PNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKA 261
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H + +K+ D F + N LI+ +
Sbjct: 262 VHGMAIKTSFGDDVF-----------------------------------VLNSLIHFYA 286
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
G+L A +F M+ N K +VSW +M+ G
Sbjct: 287 SCGHLDLAYLVFEMIEGNN-----------------------------KDIVSWNSMVTG 317
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
F Q G +KAL +F +M + GV N T+VS +SACAK L G +V +YI N+ +
Sbjct: 318 FVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMN 377
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI--------------------- 369
+ A +DM+ KCG +E A +F +++D+++WT +I
Sbjct: 378 LNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPR 437
Query: 370 -----WGLAI-----HGRYEQAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQVKLAL 417
W + I GR ++A+ F+++ SG PD L+ L+AC G + +
Sbjct: 438 KDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGE 497
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
++ + I+ + T ++++ S+ G V+KA+ + + D +W A+
Sbjct: 498 WIHGYIKKER-IQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAM 555
Query: 478 H 478
H
Sbjct: 556 H 556
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 19/292 (6%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF--VFMLRLSVRPNRLTYPFVSKSV 139
A IFD K++ +NVLI G ++ + ++ F + + + RP+++T +
Sbjct: 428 ARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSAC 487
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
A L + +G +H I K ++ + + L DMY + G A +VF K+ V
Sbjct: 488 AQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKD----V 543
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+W+ +I G + G A+ELF M K N ++ +L+ G + + LF++
Sbjct: 544 FVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDE 603
Query: 256 MPE-KGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
M GVV ++ M++ + G E+AL F + + A+ + + L AC G
Sbjct: 604 MERVYGVVPKTKHYSCMVDVLGRAGHLEEALK-FIEGMPLAPSASVWGAL--LGACCIHG 660
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
LE + + + + G GA L ++YAK G+ E S + + ++ L
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAY-VLLSNLYAKTGDWEGVSELRQQMRDSGL 711
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
IH I + + + T LI S ++ A+ +F K++ +++ +I GLA +
Sbjct: 499 IHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGR 558
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
++ I F+ M V+PN +T+ + + + L+ G+ L +D RV+
Sbjct: 559 GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL----------FDEMERVY 608
Query: 170 -----------LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL--- 215
+ D+ + G A K + P + S +W L+ C G L
Sbjct: 609 GVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMP---LAPSASVWGALLGACCIHGNLELA 665
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
KA + N ++V L + + + GD + EL +QM + G+
Sbjct: 666 EKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGL 711
>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
Length = 643
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 248/495 (50%), Gaps = 14/495 (2%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI +++ +T + +S + ++ + HA +++ L
Sbjct: 57 MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGL 116
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ IDYA +FD K++ +N+LI G + + I
Sbjct: 117 ELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQL 176
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M ++ + +T + + A LG+ + C ++ E D + DMY + G
Sbjct: 177 MRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGS 236
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
A KVFD T +K+ ++LWN L+ ++ G +A+ LF M + NV +W
Sbjct: 237 IVDAKKVFDSTVQKD----LILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNL 292
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVV----SWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I +R G + +A E+F QM G+V SWT M+NG NG +E+A+ +M ++G
Sbjct: 293 IILSLLRNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESG 352
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAA 350
+R N F++ ALSACA + +L G VH YI N +I T+LVDMYAKCG+I A
Sbjct: 353 MRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKA 412
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +L + AMI A++G E+A+ + + G +PD F IL+AC ++
Sbjct: 413 EKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYGSLEDMGIKPDNITFTNILSACNHA 472
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + A+ F M + ++P ++H+ ++V+LL+ G+ +KAL + +MP PD + +
Sbjct: 473 GDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQS 532
Query: 471 LFCACRTHKDTKIAK 485
L C T++ +
Sbjct: 533 LLATCNKEHKTELVE 547
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 164/354 (46%), Gaps = 44/354 (12%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GRG+H + KSG++ FV LADMY + G A KVFDE PE+N V+ WN L+
Sbjct: 3 GRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMV 58
Query: 208 GCSKIGYLRKAVELF------GMMPKKNVAS----------------------------- 232
G + G +A+ L G+ P + S
Sbjct: 59 GYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLEL 118
Query: 233 ----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
S+++ + + G + A +F++M K VV+W +I+G+ Q G E A+ M M
Sbjct: 119 DNILGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMR 178
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
++ + T+ + +S A+ + G V Y + F + +A VDMYAKCG+I
Sbjct: 179 LEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIV 238
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
A VF T +KDL+ W ++ A G +A++ F +M P+ + I+ +
Sbjct: 239 DAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLL 298
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+GQV A F M+ + P++ T ++N L G ++A++++ KM E+
Sbjct: 299 RNGQVDEAKEMFLQMQSSGIV-PTIVSWTTMMNGLVXNGCSEEAIHYLRKMQES 351
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 2/240 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M + GV
Sbjct: 24 SLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEP 83
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
TV + LSA A +G +E G H N L +GT++++ Y K G I+ A +VF
Sbjct: 84 TRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVF 143
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD++TW +I G G E AI+ + M + D +++ + K
Sbjct: 144 DRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSK 203
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L + E + + V++ ++ G + A + + D ++W L A
Sbjct: 204 LG-KEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQ-KDLILWNTLLAA 261
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/421 (19%), Positives = 165/421 (39%), Gaps = 90/421 (21%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD +N+ +N L+ G +N + I M V P R+T +
Sbjct: 35 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSA 94
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A++ + G+ H L V +G+E D + + + Y ++G A VFD K+
Sbjct: 95 SANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKD---- 150
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-------------------------------- 226
V+ WN+LI+G + G + A+ + +M
Sbjct: 151 VVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQC 210
Query: 227 -------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ ++ + +D + + G + A ++F+ +K ++ W ++ ++++G + +
Sbjct: 211 YCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGE 270
Query: 280 ALAMFFQMLDAGVRANDFT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
AL +F++M V N T ++S L
Sbjct: 271 ALRLFYEMQLESVPPNVITWNLIILSLL-------------------------------- 298
Query: 336 ALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+ G ++ A +F + + +++WT M+ GL +G E+AI Y +KM S
Sbjct: 299 -------RNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQES 351
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G P+ L+AC + + + + SV T +V++ ++ G + K
Sbjct: 352 GMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISK 411
Query: 452 A 452
A
Sbjct: 412 A 412
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G VH Y++ + + ++L DMY KCG ++ A VF E E++++ W A++ G
Sbjct: 3 GRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQ 62
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL-----ALNFFDSMRFDYFI 429
+G E+AI+ M G EP L+A G V+ AL + + D +
Sbjct: 63 NGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNIL 122
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
T ++N +VG +D A ++M D V W L
Sbjct: 123 ------GTSILNFYCKVGLIDYAEMVFDRMI-GKDVVTWNLLI 158
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/506 (28%), Positives = 234/506 (46%), Gaps = 44/506 (8%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH + + + + T L+ + + A +F ++L ++ +I L +
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + +S F M ++PNR+T + + A LSLL LG+ +HC VK+ ++ D
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L MY + G A F+ + S ++ WN LING ++IG A+++F
Sbjct: 469 TALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524
Query: 223 -----------GMMP-----------------------KKNVASWVSLIDGFMRKGDLKK 248
G++P + + +LID + + G L
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584
Query: 249 AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
A LF + K V+W +I + QNG A++A++ F QM N T VS L A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ A G+ H I F +G +L+DMYAKCG + + +F E KD ++W A
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNA 704
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
M+ G A+HG ++AI F M S + D F+++L+AC + G V+ F SM Y
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKY 764
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I+P ++H+ +V+LL R G D+ L FI MP PD +WGAL +CR H + K+ ++A
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKG 513
L L P + Q G
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSG 850
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 233/507 (45%), Gaps = 48/507 (9%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
H R T+IA + S S H L+ S L QIHAQII+ F
Sbjct: 5 HQLRRSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 63
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
T LI+ SL D A S+FD + ++N +IR + + + + M+
Sbjct: 64 HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
+ P++ T+ FV K+ L G H I + G+E D F+ L DMY ++G + A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183
Query: 184 FKVFDETPEKNKSESVLLWNVLING-------CSKIGYLR---------KAVELFGMMP- 226
+VFD+ P+++ V+ WN +I G C + + R +V L + P
Sbjct: 184 REVFDKMPKRD----VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239
Query: 227 ------------------KKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+++ +S VS LID + + GD+ A +F+QM ++ VSW
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ G++ NG + L +F +M VR N + VSA A A+ LE G +H
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ T L+ MYAKCG E A +F + +DL+ W+A+I L G E+A+ F+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKL--ALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
+M +P+ ++IL AC +KL +++ F +++ D ++ + T +V++ +
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF-TVKAD--MDSDLSTGTALVSMYA 476
Query: 445 RVGQVDKALNFINKMPETPDFVIWGAL 471
+ G AL N+M + D V W +L
Sbjct: 477 KCGFFTAALTTFNRM-SSRDIVTWNSL 502
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 200/458 (43%), Gaps = 81/458 (17%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N +T I+ + K + IH + ++ + T L+S + AL
Sbjct: 427 KP-NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAAL 485
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASL 142
+ F+ + +++ +N LI G A+ + I F + LRLS + P+ T V + A L
Sbjct: 486 TTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF-YKLRLSAINPDAGTMVGVVPACALL 544
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ L G +H LIVK G E D V+ L DMY + G A +F++T + ++ + W
Sbjct: 545 NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT---DFTKDEVTW 601
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKN-------------VASWV--------------- 234
NV+I + G+ ++A+ F M +N A+++
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661
Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
SLID + + G L + +LF +M K VSW AM++G++ +G ++A+A+
Sbjct: 662 MGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F M ++ V+ + + VS LSAC G +E G ++ + +S + + +K
Sbjct: 722 FSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMS-DKYHIK------------- 767
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
DL + M+ L G +++ + + K M EPD V+ A+
Sbjct: 768 ----------------PDLEHYACMVDLLGRAGLFDETLGFIKVM---PVEPDAGVWGAL 808
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
L +C VKL D + +EP H VV++
Sbjct: 809 LGSCRMHSNVKLGEVALDHL---VKLEPRNPAHFVVLS 843
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 231/453 (50%), Gaps = 12/453 (2%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
+S + + RQ H ++ L + + + +++ I+ A +F + K++ +N+
Sbjct: 268 NSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNL 327
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
++ G A+ + + M +R + +T + A L LG H VK+
Sbjct: 328 VVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKND 387
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
E D V + DMY + G+ A +VF +K+ ++LWN ++ C++ G +A+
Sbjct: 388 FEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKD----IVLWNTMLAACAEQGLSGEAL 443
Query: 220 ELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGF 271
+LF M NV SW SLI GF + G + +A +F +M GV ++WT M++G
Sbjct: 444 KLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGL 503
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
QNG A+ +F +M D G+R N ++ SALS C + L+ G +H Y+ D
Sbjct: 504 VQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSI 563
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
I T+++DMYAKCG+++ A VF K+L + AMI A HG+ +A+ FK+M
Sbjct: 564 HIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKE 623
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G PD ++L+AC + G +K + F M + ++PS +H+ +V LL+ GQ+D+
Sbjct: 624 GIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDE 683
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
AL I MP PD I G+L AC + D ++A
Sbjct: 684 ALRTILTMPSHPDAHILGSLLTACGQNNDIELA 716
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 190/418 (45%), Gaps = 48/418 (11%)
Query: 49 QIHAQIILHN-LFA-SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
Q+HA +I FA + + ++L+ + + + A +F N+ + +I GL
Sbjct: 72 QLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAII-GLHT 130
Query: 107 NSHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDA 164
+ F + + ++ M + + P+ P V K+ L + G+G+H +VK+ G++
Sbjct: 131 RTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECV 190
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+V L DMY + G A KVFDE E+N + WN ++ ++ G ++A+ +F
Sbjct: 191 YVATSLVDMYGKCGAVEDAGKVFDEMSERND----VTWNSMVVTYAQNGMNQEAIRVFRE 246
Query: 225 MPKKNVASWVSLIDGF---------------------------------------MRKGD 245
M + V + + GF + G
Sbjct: 247 MRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGL 306
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+++A +F M K VV+W ++ G++Q G EKAL M M + G+R + T+ + L+
Sbjct: 307 IEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAV 366
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A L G++ H Y NDF + + ++DMYAKCG ++ A VF ++KD++ W
Sbjct: 367 AADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLW 426
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
M+ A G +A++ F +M P+ + +++ + +GQV A N F M
Sbjct: 427 NTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEM 484
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 52/375 (13%)
Query: 145 LSLGRGLHCLIVKSGVEY--DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L L LH ++K G + + FV L +Y + G + A ++F ++P N V W
Sbjct: 67 LPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPN----VFSW 122
Query: 203 NVLINGCSKIGYLRKAVELFGM-------MPKKN-----------VASWV---------- 234
+I ++ G+ +A LFG +P N V WV
Sbjct: 123 AAIIGLHTRTGFCEEA--LFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFV 180
Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
SL+D + + G ++ AG++F++M E+ V+W +M+ ++QNG ++A
Sbjct: 181 VKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEA 240
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
+ +F +M GV + +ACA A+ G + H L +G+++++
Sbjct: 241 IRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNF 300
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y K G IE A +VF KD++TW ++ G A G E+A++ M G D
Sbjct: 301 YFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTL 360
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
A+L + + L + + F E V + ++++ ++ G++D A + +
Sbjct: 361 SALLAVAADTRDLVLGMKAHAYCVKNDF-EGDVVVSSGIIDMYAKCGRMDCARRVFSCV- 418
Query: 461 ETPDFVIWGALFCAC 475
D V+W + AC
Sbjct: 419 RKKDIVLWNTMLAAC 433
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/467 (20%), Positives = 184/467 (39%), Gaps = 88/467 (18%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L+ +++ A +FD + +N +N ++ A+N Q I F M
Sbjct: 192 VATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQG 251
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V + + A+ + GR H L V G+E D + + + Y ++G A
Sbjct: 252 VEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAE 311
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---------------- 228
VF K+ V+ WN+++ G ++ G + KA+E+ +M ++
Sbjct: 312 VVFRNMAVKD----VVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVA 367
Query: 229 -----------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+V +ID + + G + A +F + +K +V W
Sbjct: 368 ADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWN 427
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ ++ G + +AL +FFQM V N VVS
Sbjct: 428 TMLAACAEQGLSGEALKLFFQMQLESVPPN---VVSW----------------------- 461
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLAIHGRYEQA 381
+L+ + K G + A +F E +L+TWT M+ GL +G A
Sbjct: 462 ---------NSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGA 512
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK--LALNFFDSMRFDYFIEPSVKHHTVV 439
+ F++M G P+ + L+ C +K A++ + MR D + S+ T +
Sbjct: 513 MMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGY-VMRRD--LSQSIHIITSI 569
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+++ ++ G +D A + KM T + ++ A+ A +H + A +
Sbjct: 570 MDMYAKCGSLDGA-KCVFKMCSTKELYVYNAMISAYASHGQAREALV 615
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 121/287 (42%), Gaps = 17/287 (5%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
NL + ++ GL +N + F M + +RPN ++ S++LL GR +H
Sbjct: 492 NLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIH 551
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+++ + + + DMY + G GA VF K + ++N +I+ +
Sbjct: 552 GYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKE----LYVYNAMISAYASH 607
Query: 213 GYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS----- 263
G R+A+ LF M K+ + + S++ G +K+ ++F+ M + +
Sbjct: 608 GQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEH 667
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
+ ++ + +G+ ++AL M + + S L+AC + +E + ++
Sbjct: 668 YGCLVKLLANDGQLDEALRTILTMPS---HPDAHILGSLLTACGQNNDIELADYIAKWLL 724
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
D G AL ++YA G + S + G KEK L W
Sbjct: 725 KLDPDNSGNY-VALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSW 770
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 3/203 (1%)
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFG 328
++G +A+ QM + + L C AL +++H + F
Sbjct: 26 LCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTFA 85
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
L + + LV +YAKCG E A+ +F ++ ++ +W A+I G E+A+ + KM
Sbjct: 86 LNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKM 145
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PD V +L AC V+ + ++ V T +V++ + G
Sbjct: 146 QQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGA 205
Query: 449 VDKALNFINKMPETPDFVIWGAL 471
V+ A ++M E D V W ++
Sbjct: 206 VEDAGKVFDEMSERND-VTWNSM 227
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+++ T +S S K R IH ++ +L S I T ++ + S+D A +F
Sbjct: 527 NSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVF 586
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ K L+++N +I A + + + F M + + P+ +T V + + L+
Sbjct: 587 KMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMK 646
Query: 147 LG 148
G
Sbjct: 647 EG 648
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/494 (29%), Positives = 244/494 (49%), Gaps = 18/494 (3%)
Query: 2 KGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIIS---LIHSSNSTKQLRQIHAQIILHN 58
+ H NRL +A + + K + + ++S L+ + LR +
Sbjct: 41 QSHDPNRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPD 100
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+ T L+S + + +D A ++F +N+ +N ++ A + F
Sbjct: 101 ARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFD 160
Query: 119 FM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
M +R + N L V + GR E D + D +
Sbjct: 161 RMPVRDAGSWNILLATLVRSGSVDKARELFGRM---------PERDVMAWTTMVDGVARS 211
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
GK A +FD PE+N V+ WN +I+G ++ + +A++LF MP++++AS ++
Sbjct: 212 GKVDEARVLFDSMPERN----VVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMV 267
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
GF++ DLK+A ELF++MPE+ VV+WT M+NG+ + ++E AL +F ML AG R N
Sbjct: 268 TGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQV 327
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T + AL AC+ + AL G +VH I F + +AL+++YAKCG I A +F +
Sbjct: 328 TFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLS 387
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+EKDL++W +I A HG +AI ++KM +G P+ ++ +L+AC +SG V L
Sbjct: 388 REKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGL 447
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DFVIWGALFCACR 476
F+SM D I +H+T +++L SR G++D A I+ + P +W AL C
Sbjct: 448 KIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCN 507
Query: 477 THKDTKIAKIALQS 490
H + I +A ++
Sbjct: 508 AHGNESIGNLAARN 521
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 157/330 (47%), Gaps = 31/330 (9%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A +F P++N V+ WN ++ + G + A LF MP ++ SW L+ +R
Sbjct: 124 AEALFQRMPQRN----VVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVR 179
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G + KA ELF +MPE+ V++WT M++G +++G+ ++A +F M + V + + ++S
Sbjct: 180 SGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWN-AMISG 238
Query: 303 LSACAKVG-ALEAGVRV--HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
+ ++ AL+ +++ + SCN +V + + +++ A +F E E
Sbjct: 239 YTRNHRIDEALDLFMKMPERDIASCN----------IMVTGFIQNKDLKRARELFDEMPE 288
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-----WYSGQVK 414
++++TWT M+ G + E A+ F M+ +GT P+ FL L AC G+
Sbjct: 289 RNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQV 348
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ + +FD F+E + ++N+ ++ G++ A + + D + W + A
Sbjct: 349 HQMICKTTFQFDAFVE------SALMNVYAKCGEIGLARKLFD-LSREKDLISWNGIIAA 401
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
H I I L N P ++Y
Sbjct: 402 Y-AHHGVGIEAILLYEKMQENGYRPNDVTY 430
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 139/330 (42%), Gaps = 55/330 (16%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+K + A +FD +N+ + ++ G + + + F ML RPN++T+
Sbjct: 273 NKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGA 332
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ + L+ L G+ +H +I K+ ++DAFV L ++Y + G+ A K+FD + E
Sbjct: 333 LDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSRE--- 389
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
K++ SW +I + G +A L+E+
Sbjct: 390 --------------------------------KDLISWNGIIAAYAHHGVGIEAILLYEK 417
Query: 256 MPEKGV----VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVG 310
M E G V++ +++ S +G ++ L +F M+ D + D + C++ G
Sbjct: 418 MQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAG 477
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC--------GNIEAASLVFGETKEKDL 362
L+ R+ +Y+ +K A G+ + C GN+ A +L+ E
Sbjct: 478 RLDDAKRLIHYLK-----IKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGT 532
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
T + I+ A G++++A + +M G
Sbjct: 533 YTLLSNIYASA--GKWKEAAEIRSEMNNRG 560
>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like [Glycine max]
Length = 713
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/409 (33%), Positives = 221/409 (54%), Gaps = 5/409 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
A +FD +N+ ++ +I G FQ F+ M R V N T + K+
Sbjct: 218 ARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACG 277
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ +S G +H L+ + G E+D + + MY LG T A KVF +K+ ++
Sbjct: 278 NCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKD----IV 333
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI+G + A +FG MP K+V SW ++I GF + G ++ A ELF +P K
Sbjct: 334 TWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKD 393
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
WTA+I+GF N E E+AL + +M+ G + N T+ S L+A A + AL G+++H
Sbjct: 394 DFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHT 453
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
I + +I +L+ Y+K GN+ A +F + E +++++ ++I G A +G ++
Sbjct: 454 CILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDE 513
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+ +KKM G EP+ FLA+L+AC ++G V N F++M+ Y IEP H+ +V
Sbjct: 514 ALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMV 573
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
++L R G +D+A++ I MP P +WGA+ A +TH +AK+A Q
Sbjct: 574 DILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQ 622
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 47/387 (12%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPN 128
I+ + ++ A SIF KN + ++ A+N Q+ F M R +V N
Sbjct: 48 IAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNN 107
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+ ++ L L ++ V Y A + +V+ GK A K++
Sbjct: 108 AMISAYIRNGCNVGKAYEL---FSVLAERNLVSYAAMIM-----GFVKAGKFHMAEKLYR 159
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
ETP + + + N LING K+G + +A+ +F M +++V SW +++DG R G +
Sbjct: 160 ETPYEFRDPACS--NALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAA 217
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACA 307
A +LF++MP++ VVSW+AMI+G+ G ++ +F M G V N T+ AC
Sbjct: 218 ARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACG 277
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG---------------------- 345
G + G+++H +S F + +++ MY+ G
Sbjct: 278 NCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNS 337
Query: 346 ---------NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
+EAA VFG KD+++WTAMI G + GR E AI+ F + D
Sbjct: 338 LISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNML----PAKD 393
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSM 423
V+ AI++ + + + AL+++ M
Sbjct: 394 DFVWTAIISGFVNNNEYEEALHWYARM 420
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 49/306 (16%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N I + G +++A +F MP KN ASW +++ F + G ++ A LF++MP++ V
Sbjct: 45 NTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTV 104
Query: 263 SWTAMINGFSQNG------------EAEKALAMFFQMLDAGVRANDFTVVSAL------- 303
S AMI+ + +NG AE+ L + M+ V+A F + L
Sbjct: 105 SNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYE 164
Query: 304 ---SACA--------KVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAAS 351
AC+ K+G + +R+ + G + + +A+VD + G + AA
Sbjct: 165 FRDPACSNALINGYLKMGEVNEALRIF-----ENMGERDVVSWSAMVDGLCRDGRVAAAR 219
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYS 410
+F ++++++W+AMI G G +++ F M G E + T + AC
Sbjct: 220 DLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNC 279
Query: 411 GQVKLALNFFD-----SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
G++ + FD + S V+ + S +G D A + + D
Sbjct: 280 GRMSEGMQIHGLVSRLGFEFDNVLSNS------VITMYSMLGCTDMADKVFCTVSD-KDI 332
Query: 466 VIWGAL 471
V W +L
Sbjct: 333 VTWNSL 338
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ S ++ A+ +F+ K+ ++ +I G N+ ++ + + M+ +
Sbjct: 367 TAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCK 426
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN LT V + A+L L+ G +H I+K +EY+ ++ L Y + G A+++
Sbjct: 427 PNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRI 486
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMR 242
F + E N V+ +N +I+G ++ G+ +A+ ++ M + N ++++++
Sbjct: 487 FLDVIEPN----VISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTH 542
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
G + + +F M E + M++ + G ++A+ + M
Sbjct: 543 AGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSM 592
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 14/231 (6%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
QIH I+ NL + I LIS S ++ A IF N+ +N +I G A+N
Sbjct: 450 QIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNG 509
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVR 167
+ + M PN +T+ V + L+ G + + + G+E +A
Sbjct: 510 FGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHY 569
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAVELFG 223
+ D+ + G A + P K S +W ++ G SK + + A +
Sbjct: 570 ACMVDILGRAGLLDEAIDLIRSMPFKPHSG---VWGAIL-GASKTHLRLDLAKLAAQRIT 625
Query: 224 MMPKKNVASWVSLID-----GFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ KN +V L + G GDL K + + + + SW M N
Sbjct: 626 DLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLKGIKKSPGCSWITMKN 676
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/480 (30%), Positives = 243/480 (50%), Gaps = 50/480 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ H I+ + + + LI + S+ A +F++ T ++ + +I
Sbjct: 220 KSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLG 279
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFV 166
+ + ++ FV M + V PN +T + +S +LSLL G+ +HC+++K+ ++ + +
Sbjct: 280 GYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCL 339
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L ++Y K K+ E + + +WN LI+ ++ G L++ V+LF
Sbjct: 340 GPTLLELYAATAKHDLCEKILHEIGGRG----IAVWNTLISVYAQKGLLKETVDLFVRMQ 395
Query: 223 --GMMPKKNVAS--------------------------------WVSLIDGFMRKGDLKK 248
G MP + + SLI+ + + G +
Sbjct: 396 KQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYVDL 455
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F+QM KGVV+W +MI+G SQNG + KA+++F M + VS + AC+
Sbjct: 456 AYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSH 515
Query: 309 VGALEAGVRVHN-YISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
+G LE G +H+ I+C G++ I TALVDMYAKCG+++ A VF E+ +++W
Sbjct: 516 LGFLEKGKWIHHKLITC---GVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSW 572
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+++I +HG+ + I F KM+ SG +P+ + +L+AC ++G VK + FF+SMR
Sbjct: 573 SSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMR- 631
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
D+ IEP +H +V+LLSR G +D+A I MP P IWGAL CR H+ IAK
Sbjct: 632 DFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAK 691
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 208/474 (43%), Gaps = 41/474 (8%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
+ L +S + +QL Q+HA II+ L +T+LI S S + + S+F F +
Sbjct: 5 MPLFKASTTLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++ VL++ N +Q IS + ML ++ N T+P V ++ + L +G+ +H
Sbjct: 65 FMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGR 124
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP----------------------- 191
I+KSG + D V L +Y +LG A KVF E P
Sbjct: 125 IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184
Query: 192 ---------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW----VSLID 238
E +SVL+ V + C ++G LR A G + K+ + + SLI
Sbjct: 185 LDAFRCMVSEGGTPDSVLVLTV-VEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIF 243
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G L+ A +FE + + +WTAMI+ ++ G ++ALA+F M V N T
Sbjct: 244 MYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVT 303
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLK-GAIGTALVDMYAKCGNIEAASLVFGET 357
+ L +C + L G VH + ND +G L+++YA + + E
Sbjct: 304 MRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEI 363
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ + W +I A G ++ + F +M G PD + L+A G+++L L
Sbjct: 364 GGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGL 423
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ F++ V ++N+ S+ G VD A ++M E V W ++
Sbjct: 424 QIHGHVIKRPFMDEYV--FNSLINMYSKCGYVDLAYMIFDQM-EPKGVVTWNSM 474
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 223/524 (42%), Gaps = 58/524 (11%)
Query: 1 MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+K HV+N AI+ + S +N+ T ++ +++H +II
Sbjct: 71 LKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGF 130
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ T L+S +D A +F ++L ++ +I + EN + F
Sbjct: 131 DMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRC 190
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+ P+ + V ++ L +L L + H I+K G+E D FV L MY + G
Sbjct: 191 MVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGS 250
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
R A VF+ ++ S W +I+ + GYL++A+ LF M K V +
Sbjct: 251 LRSAEIVFENVTYRSTST----WTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRI 306
Query: 240 FMR-------------------KGDLKK---------------------AGELFEQMPEK 259
+R K DL ++ ++ +
Sbjct: 307 ILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGR 366
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
G+ W +I+ ++Q G ++ + +F +M G + F++ S+LSA G L+ G+++H
Sbjct: 367 GIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIH 426
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
++ F + + +L++MY+KCG ++ A ++F + + K ++TW +MI GL+ +G
Sbjct: 427 GHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYST 485
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVK 434
+AI F M + E F++++ AC + G ++ + R FIE
Sbjct: 486 KAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIE---- 541
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
T +V++ ++ G + A + M E V W +L + H
Sbjct: 542 --TALVDMYAKCGDLQTAQRVFDNMSER-SVVSWSSLISSYGVH 582
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 238/474 (50%), Gaps = 40/474 (8%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---- 90
+ LIHSS ST+ +LH +R+ LH A ++FDH
Sbjct: 41 LKLIHSSLSTRGF-------LLHTPHFLARLIILYSKLGDLHS----ARTLFDHRHHHHH 89
Query: 91 ----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
N + N ++R A I +++M R+ V N TYPFV K AS
Sbjct: 90 GHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H +V++G D FV L DMY + G+ A +VFD ++ V+ W +I
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRD----VVCWTAMI 205
Query: 207 NGCSKIGYLRKAVELFGMMPKK----------NVASWVS-LIDGFMRKGDLKKAGELFEQ 255
+ KA+ LF M ++ +VAS V L DG M + +A +F++
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA---ISRARLVFDR 262
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M E+ +SW +M++G++QNG AL++F QM + N T + +SAC+ +G+ G
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIWGLA 373
++HN++ + + + A++DMY KCG+++ A +F E E+D+ +W +I G
Sbjct: 323 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 382
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+HG ++A++ F +M G EP+ F +IL+AC ++G + F M + P +
Sbjct: 383 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEM 441
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
KH+ +V++L R G +++A I K+P P +WGAL ACR H +T++ +IA
Sbjct: 442 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIA 495
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/480 (30%), Positives = 243/480 (50%), Gaps = 50/480 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ H I+ + + + LI + S+ A +F++ T ++ + +I
Sbjct: 220 KSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLG 279
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFV 166
+ + ++ FV M + V PN +T + +S +LSLL G+ +HC+++K+ ++ + +
Sbjct: 280 GYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCL 339
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
L ++Y K K+ E + + +WN LI+ ++ G L++ V+LF
Sbjct: 340 GPTLLELYAATAKHDLCEKILHEIGGRG----IAVWNTLISVYAQKGLLKETVDLFVRMQ 395
Query: 223 --GMMPKKNVAS--------------------------------WVSLIDGFMRKGDLKK 248
G MP + + SLI+ + + G +
Sbjct: 396 KQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYVDL 455
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F+QM KGVV+W +MI+G SQNG + KA+++F M + VS + AC+
Sbjct: 456 AYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSH 515
Query: 309 VGALEAGVRVHN-YISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
+G LE G +H+ I+C G++ I TALVDMYAKCG+++ A VF E+ +++W
Sbjct: 516 LGFLEKGKWIHHKLITC---GVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSW 572
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+++I +HG+ + I F KM+ SG +P+ + +L+AC ++G VK + FF+SMR
Sbjct: 573 SSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMR- 631
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
D+ IEP +H +V+LLSR G +D+A I MP P IWGAL CR H+ IAK
Sbjct: 632 DFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAK 691
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 207/474 (43%), Gaps = 41/474 (8%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
+ L +S + + L Q+HA II+ L +T+LI S S + + S+F F +
Sbjct: 5 MPLFKASTTLRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
++ VL++ N +Q IS + ML ++ N T+P V ++ + L +G+ +H
Sbjct: 65 FMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGR 124
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP----------------------- 191
I+KSG + D V L +Y +LG A KVF E P
Sbjct: 125 IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184
Query: 192 ---------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW----VSLID 238
E +SVL+ V + C ++G LR A G + K+ + + SLI
Sbjct: 185 LDAFRCMVSEGGTPDSVLVLTV-VEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIF 243
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G L+ A +FE + + +WTAMI+ ++ G ++ALA+F M V N T
Sbjct: 244 MYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVT 303
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLK-GAIGTALVDMYAKCGNIEAASLVFGET 357
+ L +C + L G VH + ND +G L+++YA + + E
Sbjct: 304 MRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEI 363
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ + W +I A G ++ + F +M G PD + L+A G+++L L
Sbjct: 364 GGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGL 423
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ F++ V ++N+ S+ G VD A ++M E V W ++
Sbjct: 424 QIHGHVIKRPFMDEYV--FNSLINMYSKCGYVDLAYMIFDQM-EPKGVVTWNSM 474
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 223/524 (42%), Gaps = 58/524 (11%)
Query: 1 MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+K HV+N AI+ + S +N+ T ++ +++H +II
Sbjct: 71 LKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGF 130
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ T L+S +D A +F ++L ++ +I + EN + F
Sbjct: 131 DMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRC 190
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M+ P+ + V ++ L +L L + H I+K G+E D FV L MY + G
Sbjct: 191 MVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGS 250
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
R A VF+ ++ S W +I+ + GYL++A+ LF M K V +
Sbjct: 251 LRSAEIVFENVTYRSTST----WTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRI 306
Query: 240 FMR-------------------KGDLKK---------------------AGELFEQMPEK 259
+R K DL ++ ++ +
Sbjct: 307 ILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGR 366
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
G+ W +I+ ++Q G ++ + +F +M G + F++ S+LSA G L+ G+++H
Sbjct: 367 GIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIH 426
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
++ F + + +L++MY+KCG ++ A ++F + + K ++TW +MI GL+ +G
Sbjct: 427 GHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYST 485
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVK 434
+AI F M + E F++++ AC + G ++ + R FIE
Sbjct: 486 KAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIE---- 541
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
T +V++ ++ G + A + M E V W +L + H
Sbjct: 542 --TALVDMYAKCGDLQTAQRVFDNMSER-SVVSWSSLISSYGVH 582
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/524 (29%), Positives = 240/524 (45%), Gaps = 47/524 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
+L+ +S + +IHA +IL +F +LI S + I+ A +FD +
Sbjct: 12 TLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVD 71
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N +I + +S + M VRP+ TY V K+ L G
Sbjct: 72 AWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQA 131
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
V G D FV + ++Y + GK A +VFD+ ++ ++ W +I G ++ G
Sbjct: 132 VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRD----LVCWTTMITGLAQNGQA 187
Query: 216 RKAVELFGMMPKKNVAS---------------------------------------WVSL 236
R+AV+++ M KK V SL
Sbjct: 188 REAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSL 247
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
+D + + G L+ A +F +M K V+SW+A+I+GF+QNG A AL + M G + +
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
++VS L AC++VG L+ G VH YI TA++DMY+KCG++ A VF +
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYI-VRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQ 366
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+D ++W A+I IHG E+A+ F +M + +PD F ++L+A +SG V+
Sbjct: 367 ISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKG 426
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+F M +Y I+PS KH+ +V+LLSR G+V++A I M P IW AL C
Sbjct: 427 RYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCL 486
Query: 477 THKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
H I ++A + LN P S F R W E
Sbjct: 487 NHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFF---ATARRWDE 527
>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
Length = 806
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 246/493 (49%), Gaps = 14/493 (2%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI +++ +T + +S + + +Q HA +++ L
Sbjct: 221 MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGL 280
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T +++ I+YA +FD K++ +N+LI G + + I
Sbjct: 281 EMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKL 340
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M ++ + +T + + A LG+ + C ++ E D + + DMY + G
Sbjct: 341 MRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGS 400
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS 235
A +VFD T +K+ ++LWN L+ ++ G +A+ LF M N +W
Sbjct: 401 IVDAKRVFDSTVQKD----LILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNAITWNL 456
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVV----SWTAMINGFSQNGEAEKALAMFFQMLDAG 291
+I R G + +A E+F QM G+V SWT M+NG QNG +E+A+ +M ++G
Sbjct: 457 IILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESG 516
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAA 350
+R N F++ ALSACA + +L G VH YI N +I TAL+DMYAKCG+I A
Sbjct: 517 LRPNVFSITVALSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKA 576
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF +L + AMI A+ G ++AI ++ + G +PD F +L+AC ++
Sbjct: 577 EKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLYRSLEDMGIKPDNITFTNVLSACNHA 636
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + A+ F M + +EP ++H+ ++V+LL+ G+ +KAL + +MP PD + +
Sbjct: 637 GDINQAIEIFSDMVSKHGMEPCLEHYGLMVDLLASAGETEKALRLMEEMPYKPDARMIQS 696
Query: 471 LFCACRTHKDTKI 483
L C T++
Sbjct: 697 LLVTCNEEHKTEL 709
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 219/462 (47%), Gaps = 57/462 (12%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLH----IFNVLI 101
RQIHA+I+ + F + I T+L+ + + + A ++F +N+ I V
Sbjct: 64 RQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKC 123
Query: 102 R-GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
R GLAE + + FV ML+ + P+ P V K+ +L GRG+H + KSG+
Sbjct: 124 RVGLAEGA-----LMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGRGIHGYVAKSGL 178
Query: 161 EYDA-FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
D FV LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+
Sbjct: 179 YGDCVFVASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAI 234
Query: 220 ELF------GMMPKKNVASW-------------------VSLIDG--------------F 240
L G+ P + S V++++G +
Sbjct: 235 RLMCDMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFY 294
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G ++ A +F++M K VV+W +I+G+ Q G E A+ M M ++ + T+
Sbjct: 295 CKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLS 354
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
+ +SA A+ + G V Y + F + + ++DMYAKCG+I A VF T +K
Sbjct: 355 TLMSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQK 414
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL+ W ++ A G +A++ F +M P+ + I+ + + +GQV A F
Sbjct: 415 DLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMF 474
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
M+ + P++ T ++N L + G ++A++++ KM E+
Sbjct: 475 LQMQSSGIV-PTLVSWTTMMNGLVQNGCSEEAVHYLRKMQES 515
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 2/240 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M + GV
Sbjct: 188 SLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEP 247
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
TV + LSA A + + G + H N + +GT++++ Y K G IE A +VF
Sbjct: 248 TRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVF 307
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD++TW +I G G E AI+ K M + D +++A + K
Sbjct: 308 DRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSK 367
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L + E + + V+++ ++ G + A + + D ++W L A
Sbjct: 368 LGKE-VQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQK-DLILWNTLLAA 425
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 166/417 (39%), Gaps = 82/417 (19%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD +N+ +N L+ G +N + I M V P R+T +
Sbjct: 199 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSA 258
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A++ + G+ H + V +G+E D + + + Y ++G A VFD K+
Sbjct: 259 SANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKD---- 314
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-------------------------------- 226
V+ WN+LI+G + G + A+ + +M
Sbjct: 315 VVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQC 374
Query: 227 -------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ ++ ++ID + + G + A +F+ +K ++ W ++ ++++G + +
Sbjct: 375 YCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSGE 434
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F++M V N T N I + F
Sbjct: 435 ALRLFYEMQLESVPPNAIT--------------------WNLIILSLF------------ 462
Query: 340 MYAKCGNIEAASLVFGETKEKD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
+ G ++ A +F + + L++WT M+ GL +G E+A+ Y +KM SG P
Sbjct: 463 ---RNGQVDEAKEMFLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRP 519
Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+ L+AC + L + + + SV T ++++ ++ G + KA
Sbjct: 520 NVFSITVALSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKA 576
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 18/242 (7%)
Query: 240 FMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
F K D + E LF ++ + V SW A+I + G AE AL F +ML + ++F
Sbjct: 90 FYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFV 149
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFG 355
V + AC + G +H Y++ GL G + ++L DMY KCG ++ A VF
Sbjct: 150 VPNVCKACGALQWSGFGRGIHGYVA--KSGLYGDCVFVASSLADMYGKCGVLDDARKVFD 207
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA----CWY-S 410
E E++++ W A++ G +G E+AI+ M G EP L+A C
Sbjct: 208 EIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMCGVGE 267
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G+ A+ + + D + T V+N +VG ++ A ++M D V W
Sbjct: 268 GKQSHAVAVVNGLEMDNIL------GTSVLNFYCKVGLIEYAEMVFDRMI-GKDVVTWNL 320
Query: 471 LF 472
L
Sbjct: 321 LI 322
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 13/212 (6%)
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-D 326
++ +NGE +AL++ +M VR L C G ++H I N +
Sbjct: 16 VSSLCKNGEIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNGE 75
Query: 327 FGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F K I T LV YAKC E A +F + + +++ +W A+I G E A+ F
Sbjct: 76 FYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGF 135
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV----- 440
+M+ PD V + AC L + F Y + + V V
Sbjct: 136 VEMLKDEIFPDNFVVPNVCKACG-----ALQWSGFGRGIHGYVAKSGLYGDCVFVASSLA 190
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ + G +D A +++PE + V W AL
Sbjct: 191 DMYGKCGVLDDARKVFDEIPER-NVVAWNALM 221
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 265/540 (49%), Gaps = 79/540 (14%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSI- 79
SH+P ++I+ T I L+ + +++ + +IHA+ ++ +TT+++ + A+ +S
Sbjct: 7 SHQPWSSISPT--IQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYL 64
Query: 80 -DYALSIFDHF--------TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
++A +F + ++ ++N +I+ + + + F ML+ V ++
Sbjct: 65 AEFARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKF 124
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----------------AFVRV----- 168
+ V K+ + L + G H + K+G+ D F R
Sbjct: 125 SLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRM 184
Query: 169 ---------HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-CSKIGYLRKA 218
+ D YV+ G A ++FD P + K+ ++ WN +ING + + A
Sbjct: 185 SQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKN--LISWNSMINGYAQRADGVDIA 242
Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
LF MP+K++ SW SLIDG+++ G ++ A +LF++MP + VV+W M++G+++ G
Sbjct: 243 SNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVH 302
Query: 279 KALAMFFQMLDAGVRA---------------------NDF-----------TVVSALSAC 306
+A ++F QM V A ND T+V LSA
Sbjct: 303 QAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAI 362
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A++G L + +H Y F L G +G AL+DMY+KCG+I+ A VF + K + W
Sbjct: 363 AQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWN 422
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AMI GLAIHG E A ++ +PD F+ +L AC +SG VK L F+ M+
Sbjct: 423 AMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRK 482
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
+ IEP ++H+ +V++LSR G+++ A N I +MP P+ VIW AC HK+ + ++
Sbjct: 483 HKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGEL 542
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 12/216 (5%)
Query: 1 MKGHVFNRLTTAIAPTTNI--KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN 58
M G+V NR N K SH + T ++S I + +H +
Sbjct: 323 MAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKK 382
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
++ LI S SI A+ +F+ K++ +N +I GLA + +S +
Sbjct: 383 FLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLL 442
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVH--LADMYV 175
+ R S++P+ +T+ V + + L+ GL C ++K + + ++ + + D+
Sbjct: 443 QIERRSIKPDDITFVGVLNACSHSGLVK--EGLLCFELMKRKHKIEPRLQHYGCMVDILS 500
Query: 176 QLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGCS 210
+ G+ A + +E P E N ++W + CS
Sbjct: 501 RSGRIELAKNLIEEMPIEPND----VIWRTFLTACS 532
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 233/487 (47%), Gaps = 50/487 (10%)
Query: 46 QLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
L+QIH ++ +F + R ++ L + YA + ++ +++ LI
Sbjct: 16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIG 75
Query: 103 GLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
+ +S + M R V P+R T+P + K+V L S H IVK G+
Sbjct: 76 HFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SNPFQFHAHIVKFGL 134
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ D FVR L Y G A ++FD +K+ V+ W +I+G + G +A+
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKD----VVTWTAMIDGFVRNGSASEAMV 190
Query: 221 LFGMMPKKNVAS----------------------------------------WVSLIDGF 240
F M K VA+ SL+D +
Sbjct: 191 YFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMY 250
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ A ++F++MP + VV+WTA+I G+ Q+ +K + +F +ML + V N+ T+
Sbjct: 251 GKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLS 310
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S LSACA VGAL G RVH Y+ N + GT L+D+Y KCG +E A LVF EK
Sbjct: 311 SVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK 370
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
++ TWTAMI G A HG A F M+ S P+ F+A+L+AC + G V+ F
Sbjct: 371 NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
SM+ + +EP H+ +V+L R G +++A I +MP P V+WGALF +C HKD
Sbjct: 431 LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKD 490
Query: 481 TKIAKIA 487
++ K A
Sbjct: 491 YELGKYA 497
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 5/192 (2%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+KS P N T + ++S + + R++H +I +++ ++ T LI
Sbjct: 298 LKSDVAP-NEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC 356
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A+ +F+ KN++ + +I G A + + + F ML V PN +T+ V +
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSA 416
Query: 139 VASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
A L+ GR L + + +E A + D++ + G A + + P + +
Sbjct: 417 CAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN- 475
Query: 198 SVLLWNVLINGC 209
++W L C
Sbjct: 476 --VVWGALFGSC 485
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 244/488 (50%), Gaps = 53/488 (10%)
Query: 15 PTTNIKSSHKPSNNIT-ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
P I P N+ ++ +IS + + RQ+ Q++ N+F+ T L+S
Sbjct: 99 PQAEILFREIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFS----WTSLVSGY 154
Query: 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
++D A+ +F+ KN+ + + G A+N F M
Sbjct: 155 FKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQM------------- 201
Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDA-------FVRVHLADMY---------VQL 177
K++ + + + VKS VE D F ++ ++Y +
Sbjct: 202 -PEKNIIAWTAM----------VKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINA 250
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
+ A ++F+ P++N+ + W L+ G ++ G + A + F MP K++A+W ++I
Sbjct: 251 NRLNEAIQLFNSMPQRNE----VSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMI 306
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
++ +G + +A LF MPEK +VSW A+I+G+++NG +L ML + + N+
Sbjct: 307 TAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNET 366
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+ S L+AC + L ++ H + F + LV Y++CG++ +A +F +
Sbjct: 367 TITSVLTACDSILEL---MQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQL 423
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+ KD+++WTAMI + HG A+Q F +M+ SG +PDG F+ +L+AC ++G VK
Sbjct: 424 EIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQ 483
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DFVIWGALFCACR 476
FDSM Y +EP +H++ +V++L R G+++KA+ +++MP D + GAL ACR
Sbjct: 484 MLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACR 543
Query: 477 THKDTKIA 484
HKD +A
Sbjct: 544 LHKDVGLA 551
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 167/384 (43%), Gaps = 84/384 (21%)
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+ V Y + + V+L + + + +F E PE+N V+ + +I+G + G L
Sbjct: 80 RDAVSYASMITVYLKNKDLPQAEI-----LFREIPERN----VVADSAMISGYVRAGRLD 130
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG- 275
KA ++F M ++NV SW SL+ G+ + G++ +A LF QMPEK VVSWT + G++QNG
Sbjct: 131 KARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGF 190
Query: 276 ------------------------------EAEKALAMFFQM------------------ 287
E ++A +F+QM
Sbjct: 191 IDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINA 250
Query: 288 ---------LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
++ + N+ + + ++ A+ G +E + +++ D A+ TA V
Sbjct: 251 NRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYV 310
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
D G++ AS +F EK++++W A+I G A +G +++Y M+ S +P+ T
Sbjct: 311 DQ----GSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNET 366
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALN 454
++LTAC ++ A + F+ V+ N L SR G V A
Sbjct: 367 TITSVLTACDSILELMQAHGLVIHLGFE--------QDKVLANGLVTTYSRCGDVLSA-R 417
Query: 455 FINKMPETPDFVIWGALFCACRTH 478
FI E D V W A+ A H
Sbjct: 418 FIFDQLEIKDIVSWTAMILAYSNH 441
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 142/274 (51%), Gaps = 22/274 (8%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
NV I+ G +++A ++F MP+++ S+ S+I +++ DL +A LF ++PE+ VV
Sbjct: 55 NVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVV 114
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+ +AMI+G+ + G +KA +F QM++ V F+ S +S K+G ++ +R+ N +
Sbjct: 115 ADSAMISGYVRAGRLDKARQVFDQMVERNV----FSWTSLVSGYFKIGNVDEAMRLFNQM 170
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
+ T V YA+ G I+ A +F + EK+++ WTAM+ + ++A
Sbjct: 171 PEKNV----VSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAF 226
Query: 383 QYFKKMMYSGTEPDGTVFL--AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M P ++ +++ C + ++ A+ F+SM + + T +V
Sbjct: 227 ELFYQM------PQRNLYSWNIMISGCINANRLNEAIQLFNSMP-----QRNEVSWTTLV 275
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
L+R G ++ A + + MP T D W A+ A
Sbjct: 276 TGLARNGMMELARKYFDHMP-TKDIAAWNAMITA 308
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 55/379 (14%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
NRL AI + +S N ++ T +++ + + + R+ + ++ A + +
Sbjct: 251 NRLNEAI----QLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMI 306
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T + S+ + A ++F+ KN+ +N LI G A N + + + + MLR + +
Sbjct: 307 TAYVDQGSMAE----ASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFK 362
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T S A S+L L + H L++ G E D + L Y + G A +
Sbjct: 363 PNETT--ITSVLTACDSILELMQA-HGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFI 419
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMR 242
FD+ K+ ++ W +I S G A+++F M K + ++V L+
Sbjct: 420 FDQLEIKD----IVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSH 475
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G +KK LF+ M E ++ +++ + GE KA+ + +M
Sbjct: 476 AGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDG--- 532
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD--------------MYAK 343
A +GAL R+H D GL IG L++ YA
Sbjct: 533 ---------AVLGALLGACRLH-----KDVGLANHIGEKLIEKEPTSSGSYVLLANAYAA 578
Query: 344 CGNIEAASLVFGETKEKDL 362
CG + V E KE+++
Sbjct: 579 CGKWNEFAEVRKEMKERNV 597
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 143/508 (28%), Positives = 244/508 (48%), Gaps = 42/508 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H ++ + L + ++ LI+ ++ A +FD K++ +N +I G A N
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M VR + ++ V K A+L L LHC +VK G +D +R
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L Y + A ++F E +V+ W +I+G + +AV+LF M +K
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEI---GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 229 NVAS-----------------------------------WVSLIDGFMRKGDLKKAGELF 253
V +L+D +++ G +++A ++F
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
+ +K +V+W+AM+ G++Q GE E A+ MF ++ G++ N+FT S L+ CA A +
Sbjct: 452 SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 511
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G + H + + + +AL+ MYAK GNIE+A VF +EKDL++W +MI G
Sbjct: 512 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
A HG+ +A+ FK+M + DG F+ + AC ++G V+ +FD M D I P+
Sbjct: 572 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 631
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
+H++ +V+L SR GQ++KA+ I MP IW + ACR HK T++ ++A +
Sbjct: 632 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 691
Query: 493 SLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
++ A + GD W+E
Sbjct: 692 AMKPEDSAAYVLLSNMYAESGD---WQE 716
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 210/475 (44%), Gaps = 57/475 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H Q I + T L+ + + +FD +N+ + LI G A N
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
S ++ F+ M +PN T+ +A + G +H ++VK+G++ V
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVS 232
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L ++Y++ G R A +FD+T K SV+ WN +I+G + G +A+ +F M
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVK----SVVTWNSMISGYAANGLDLEALGMFYSMRL 288
Query: 228 KNV----ASWVSLIDGFMRKGDLK----------KAGELFEQ------------------ 255
V +S+ S+I +L+ K G LF+Q
Sbjct: 289 NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLD 348
Query: 256 ----MPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
E G VVSWTAMI+GF QN E+A+ +F +M GVR N+FT L+A
Sbjct: 349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP 408
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ E VH + ++ +GTAL+D Y K G +E A+ VF +KD++ W+A
Sbjct: 409 VISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSA 464
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS----GQVKLALNFFDSM 423
M+ G A G E AI+ F ++ G +P+ F +IL C + GQ K F
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 524
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
R D S+ + ++ + ++ G ++ A + E D V W ++ H
Sbjct: 525 RLD----SSLCVSSALLTMYAKKGNIESAEEVFKRQRE-KDLVSWNSMISGYAQH 574
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/455 (25%), Positives = 200/455 (43%), Gaps = 54/455 (11%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
+SS+ L+ A ++FD ++ + L+ G + + Q F+ + RL + +
Sbjct: 38 VSSSRLYN----AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDC 93
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
+ V K A+L GR LHC +K G D V L D Y++ + KVFDE
Sbjct: 94 SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK---------------- 227
E+N V+ W LI+G ++ + + LF G P
Sbjct: 154 MKERN----VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGV 209
Query: 228 -----------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K + SLI+ +++ G+++KA LF++ K VV+W +MI+G
Sbjct: 210 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
++ NG +AL MF+ M VR ++ + S + CA + L ++H + F
Sbjct: 270 YAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFD 329
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
I TAL+ Y+KC + A +F E ++++WTAMI G + E+A+ F +M
Sbjct: 330 QNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMK 389
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
G P+ + ILTA ++ ++ +Y E S T +++ ++G+V
Sbjct: 390 RKGVRPNEFTYSVILTALPVISPSEVHAQV---VKTNY--ERSSTVGTALLDAYVKLGKV 444
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++A + + + D V W A+ +T+ A
Sbjct: 445 EEAAKVFSGIDD-KDIVAWSAMLAGYAQTGETEAA 478
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
G + L A LF++ P + S+ +++ GFS++G ++A +F + G+ +
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGE 356
S L A + G ++H C FG ++GT+LVD Y K N + VF E
Sbjct: 96 FSSVLKVSATLCDELFGRQLH--CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
KE++++TWT +I G A + ++ + F +M GT+P+ F A L G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
L ++ ++ ++ ++NL + G V KA +K E V W ++
Sbjct: 214 LQVH-TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDK-TEVKSVVTWNSM 266
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 228/466 (48%), Gaps = 51/466 (10%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + +D AL +FD +N+ +N ++ G +N + I F+ M P
Sbjct: 168 MISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRM------PE 221
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM----YVQLGKTRGAF 184
R + + + L L+ + D VH ++ Y Q G+ A
Sbjct: 222 RDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKAR 281
Query: 185 KVFDETP------------EKN---------------------------KSESVLLWNVL 205
++FD+ P E+N K + WN +
Sbjct: 282 QLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTM 341
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
I+G ++ + +A LF MP + +W S+I GF +KG+L+ A LF +P+K +VSW
Sbjct: 342 ISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWN 401
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
+MI G+ NG+ + A ++ QML G + + T+ S LS C+ AL G+++H I+
Sbjct: 402 SMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT 461
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQY 384
I +L+ MY++CG I A +F E K +K++++W AMI G A HG A++
Sbjct: 462 VIP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALEL 520
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F+ M P F+++L AC ++G VK F SM ++ IEP ++H +V+++
Sbjct: 521 FELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVG 580
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
R GQ+++A++ IN MP PD +WGAL ACR H + ++A++A ++
Sbjct: 581 RHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEA 626
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 22/247 (8%)
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
+FDE PE++ + WN +I+G ++ G + +A++LF M ++NV SW +++ GF++ GD
Sbjct: 153 LFDEMPERD----CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGD 208
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF----QMLDAGVRANDFTVVS 301
+++A E F +MPE+ S +A++ G QNGE ++A + Q D G + + ++
Sbjct: 209 VERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNIL- 267
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--------IGTALVDMYAKCGNIEAASLV 353
L+ + G ++ ++ + I D G K +++ Y K +I +A ++
Sbjct: 268 -LAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVL 326
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + KE+D ++W MI G E+A F++M PD + ++++ G +
Sbjct: 327 FDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM----PNPDTLTWNSMISGFAQKGNL 382
Query: 414 KLALNFF 420
+LA F
Sbjct: 383 ELARALF 389
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 128/275 (46%), Gaps = 46/275 (16%)
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+ P+ + S + N I+ + G + +A LF MP++N+ +W S+I G++R+ ++ K
Sbjct: 57 QQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAK 116
Query: 249 AGELFEQMPEKGVVSWTAMINGF--SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
A +LF++MP++ VVSW MI+G+ Q E+ +F +M +
Sbjct: 117 ARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPE----------------- 159
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ +S N ++ Y + G ++ A +F +E+++++W
Sbjct: 160 ------------RDCVSWN----------TMISGYTRSGRMDEALQLFDSMQERNVVSWN 197
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN-FFDSMRF 425
AM+ G +G E+AI++F +M E D A++ +G++ A S R
Sbjct: 198 AMVTGFLQNGDVERAIEFFMRM----PERDSASLSALVAGLIQNGELDEAKRILLTSRRQ 253
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
D V + +++ + G+VDKA +++P
Sbjct: 254 DDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIP 288
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/488 (29%), Positives = 243/488 (49%), Gaps = 16/488 (3%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIH-AQIILHNLFASSRI 65
NR +A + + + + + ++S + + Q+H A +LH A +
Sbjct: 43 NRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNV 102
Query: 66 TT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
T L+S + + +D A ++FD +N+ +N ++ A + + F M
Sbjct: 103 VTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGM--- 159
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
VR ++ V S ++ R + ++ + + + + G A
Sbjct: 160 PVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMI-----SGLARSGSADEA 214
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
+FD PE+N V+ WN +I+G ++ + +A++LF MP+++VASW +I GF++
Sbjct: 215 RALFDGMPERN----VVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQN 270
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
DLKKA ELF++MP++ VVSWT M+NG Q E+E AL +F ML G+R N T + A+
Sbjct: 271 KDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAV 330
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A + + L G +VH I F I ++L+ +YAKCG I A VF + EKD++
Sbjct: 331 DAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVI 390
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W MI A HG +AI ++KM + +P+ ++ +L+AC +SG V L F+ M
Sbjct: 391 SWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 450
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DFVIWGALFCACRTHKDTK 482
D I +H++ +++L SR G++D A IN + P +W AL C H +
Sbjct: 451 AKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNES 510
Query: 483 IAKIALQS 490
I +A ++
Sbjct: 511 IGDLAARN 518
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 25/336 (7%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y + + A +FD PE+N V+ WN ++ + G + A LF MP ++ SW
Sbjct: 112 YARARRVDEARALFDRMPERN----VVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSW 167
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
L+ +R G + +A LFE+MPE+ V+SWT MI+G +++G A++A A+F M + V
Sbjct: 168 NILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNV- 226
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ + +S A+ ++ + + + D A ++ + + +++ A +
Sbjct: 227 ---VSWNAMISGYARNLRIDEALDLFMNMPERDV----ASWNIMITGFIQNKDLKKAQEL 279
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT-----ACW 408
F E ++++++WT M+ G E A+Q F M+ G P+ FL + A
Sbjct: 280 FDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGL 339
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
GQ + +FD FIE S ++ L ++ G++ A + E D + W
Sbjct: 340 SEGQQVHQMICKTPFQFDNFIESS------LMKLYAKCGEIRLARKVFDLSGEK-DVISW 392
Query: 469 GALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
+ A H + IAL N P ++Y
Sbjct: 393 NGMIAAY-AHHGAGVEAIALYEKMQENRYKPNDVTY 427
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 137/313 (43%), Gaps = 34/313 (10%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+K + A +FD +N+ + ++ G + + + + F ML +RPN++T+
Sbjct: 270 NKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGA 329
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ ++L+ LS G+ +H +I K+ ++D F+ L +Y + G+ R A KVFD + EK+
Sbjct: 330 VDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKD- 388
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE 251
V+ WN +I + G +A+ L+ M K N ++V L+ G + +
Sbjct: 389 ---VISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLR 445
Query: 252 LFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+FE M + ++ ++ +I+ S+ G + A + + ++ TV SAL
Sbjct: 446 IFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGL---KLKPTSSTVWSALL-- 500
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGET 357
G H S D + + T L ++YA G + A+ + E
Sbjct: 501 -------GGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEM 553
Query: 358 KEKDLLTWTAMIW 370
++ L W
Sbjct: 554 NDRGLKKQPGCSW 566
>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
Length = 582
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/478 (30%), Positives = 232/478 (48%), Gaps = 46/478 (9%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN-S 108
IHA+ ++ + A+ T LI++ + + YA +FD ++ +++N L+R A + +
Sbjct: 44 IHARAVVLGISANPAFATSLITAVA-PACLAYARRVFDAAPSRDAYMWNTLLRAHAHSRA 102
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
H + ++ + M V P+ TYP V + A+ LGR H V+ + D FV
Sbjct: 103 HARDALALYARMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFVSS 162
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
L MY Q G+ R A +VF E++ + +V+ W ++ G ++ + +AV LF
Sbjct: 163 ALISMYSQEGEVRDAERVF---AERDDARTVVSWTAMVAGYAQNCFFGEAVTLFSDMVAA 219
Query: 223 GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKKA 249
G++P + NV +LI + R G A
Sbjct: 220 GVLPNEITLISFLPCLRGQEWLPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSAPVA 279
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
LF M + +VSW M+ + Q+G+ +A+ F +ML V + T+VS LSACA+
Sbjct: 280 RVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARS 339
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE--TKEKDLLTWTA 367
GAL G VH + IG LVDMYAKCG I A VF + +++W+A
Sbjct: 340 GALGTGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAYAKEVFHSHGLRGHSVVSWSA 399
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI A HG E+A++ F M G P+ F A+L AC +SG V L F+S+ DY
Sbjct: 400 MINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMACCHSGLVDEGLKHFNSIATDY 459
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ P+++H+ +V++L R G++ +A I MP PD +WGA CR H ++A+
Sbjct: 460 QMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGGCRLHGMVELAE 517
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 176/414 (42%), Gaps = 51/414 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF-DHFTPKNLHIFNVLIRGLAE 106
R H + L +++ LIS S + A +F + + + + ++ G A+
Sbjct: 143 RAAHGDAVRFALARDGFVSSALISMYSQEGEVRDAERVFAERDDARTVVSWTAMVAGYAQ 202
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N F ++ F M+ V PN +T + L +G +H +VK G + + +
Sbjct: 203 NCFFGEAVTLFSDMVAAGVLPNEITLISFLPCLRGQEWLPVGEMVHGFVVKLGFDANVPM 262
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
L MY + G A +F+ S +++ WN ++ + G +A++ F M
Sbjct: 263 VNALITMYGRCGSAPVARVLFNGM----SSRTLVSWNTMVAMYEQHGDGVQAIKFFRRML 318
Query: 227 KKNVA----------------------SWVS-----------------LIDGFMRKGDLK 247
+ V WV L+D + + G++
Sbjct: 319 TEKVGFDCVTLVSVLSACARSGALGTGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIA 378
Query: 248 KAGELFEQMPEKG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
A E+F +G VVSW+AMIN ++ +GEAE+AL +F M + GVR N FT + L A
Sbjct: 379 YAKEVFHSHGLRGHSVVSWSAMINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMA 438
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGN-IEAASLVFGETKEKDL 362
C G ++ G++ N I+ D+ + + +VDM + G +EA ++ G D
Sbjct: 439 CCHSGLVDEGLKHFNSIA-TDYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDK 497
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
W A + G +HG E A +Y K ++ D T ++ + + +G ++ A
Sbjct: 498 CVWGAFLGGCRLHGMVELA-EYVAKELFDSGSNDVTFYVLMANMYFEAGMLEDA 550
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 132/355 (37%), Gaps = 50/355 (14%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT + + +H ++ A+ + LI+ S A +F
Sbjct: 224 NEITLISFLPCLRGQEWLPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSAPVARVLF 283
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ + + L +N ++ ++ I F ML V + +T V + A L
Sbjct: 284 NGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALG 343
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +H L G++ DA + L DMY + G+ A +VF + SV+ W+ +I
Sbjct: 344 TGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAYAKEVFHS--HGLRGHSVVSWSAMI 401
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS---------------------------------- 232
N + G +A++LF +M + V
Sbjct: 402 NAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMACCHSGLVDEGLKHFNSIATDYQM 461
Query: 233 ------WVSLIDGFMRKGDLKKAGELFEQM---PEKGVVSWTAMINGFSQNGEAEKALAM 283
+ ++D R G L +A + M P+K V W A + G +G E A +
Sbjct: 462 SPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCV--WGAFLGGCRLHGMVELAEYV 519
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
++ D+G F V+ A + + G LE R+ + + LK G +LV
Sbjct: 520 AKELFDSGSNDVTFYVLMA-NMYFEAGMLEDAERIRGVM--KEMELKKTAGHSLV 571
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 234/471 (49%), Gaps = 76/471 (16%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+ P ++ + + N K Q+HA ++L L ++ + +++++ + ID
Sbjct: 63 SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDID 122
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
++S+F+ G+ + T+PFV KS
Sbjct: 123 SSVSVFN---------------GIGD----------------------YFTFPFVLKSSV 145
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L + +G+ +H LI++ G+++D +V L +Y + G+ A KVFD
Sbjct: 146 ELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN----------- 194
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
M ++V+SW +L+ G+ + G + A +FE+MP +
Sbjct: 195 ------------------------MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 230
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRV 318
+VSWT MI+G+SQ+G A++AL++F +M+ D+GVR N T++S L ACA++ LE G ++
Sbjct: 231 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 290
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE--TKEKDLLTWTAMIWGLAIHG 376
H ++ AL MYAKCG++ A F + EK+L+ W MI A +G
Sbjct: 291 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 350
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
QA+ F++M+ +G +PD F +L+ C +SG V + L +F+ M Y I P V+H+
Sbjct: 351 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 410
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
V +LL R G++ +A + +MP IWG+L ACR H++ ++A+ A
Sbjct: 411 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETA 461
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/499 (28%), Positives = 247/499 (49%), Gaps = 51/499 (10%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFD 87
T+++ L ++ K+ ++IH +I NLFA T +++ + + I+ A ++FD
Sbjct: 34 TYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFA----MTGVVNMYAKCRQINDAYNMFD 89
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
++L +N +I G A+N + + + M RP+ +T + +VA LL +
Sbjct: 90 RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G +H ++++G E V L DMY + G A +FD + +V+ WN +I+
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHR----TVVSWNSMID 205
Query: 208 GCSKIGYLRKAVELF------GMMP---------------------------------KK 228
G + G A+ +F G+ P
Sbjct: 206 GYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDS 265
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
+V+ SLI + + + A ++F+ + K +VSW AMI G++QNG +AL F +M
Sbjct: 266 DVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQ 325
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
++ + FT+VS + A A++ +H + + TALVDMYAKCG I
Sbjct: 326 SRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH 385
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
A +F + ++TW AMI G HG + +++ FK+M +P+ FL L+AC
Sbjct: 386 TARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS 445
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+SG V+ L FF+SM+ DY IEP++ H+ +V+LL R G++++A +FI KMP P ++
Sbjct: 446 HSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505
Query: 469 GALFCACRTHKDTKIAKIA 487
GA+ AC+ HK+ + + A
Sbjct: 506 GAMLGACKIHKNVDLGEKA 524
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 198/418 (47%), Gaps = 45/418 (10%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+++G A++S S +S F M SVRP + ++ K S L G+ +H ++ SG
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY----- 214
++ F + +MY + + A+ +FD PE++ ++ WN +I+G ++ G+
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERD----LVCWNTMISGYAQNGFAKVAL 116
Query: 215 ------------------------------LRKAVELFGMMPKKNVASWV----SLIDGF 240
LR + + G + + S V +L+D +
Sbjct: 117 MLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMY 176
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G + A +F+ M + VVSW +MI+G+ Q+G+AE A+ +F +MLD GV+ + TV+
Sbjct: 177 SKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVM 236
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
AL ACA +G LE G VH + ++ +L+ MY+KC ++ A+ +F + K
Sbjct: 237 GALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
L++W AMI G A +G +A+ F +M +PD ++++ A + A +
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA-KWI 355
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ F++ +V T +V++ ++ G + A + M + W A+ TH
Sbjct: 356 HGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMM-NARHVITWNAMIDGYGTH 412
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/494 (22%), Positives = 211/494 (42%), Gaps = 96/494 (19%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLH 76
+ H+P ++IT I+S++ + T+ LR +H ++ + ++T L+ S
Sbjct: 124 EEGHRP-DSIT---IVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
S+ A IFD + + +N +I G ++ + + F ML V+P +T
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-K 195
+ A L L G+ +H L+ + ++ D V L MY + + A +F KN +
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIF-----KNLR 294
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASW 233
+++++ WN +I G ++ G + +A+ F M +N+ A W
Sbjct: 295 NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW 354
Query: 234 V-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ +L+D + + G + A +LF+ M + V++W AMI+G+ +G
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGL 414
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
+ ++ +F +M ++ ND T + ALSAC+ G +E G+ + D+G+
Sbjct: 415 GKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMK-KDYGI------- 466
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
E + + AM+ L GR QA + +KM +P
Sbjct: 467 ----------------------EPTMDHYGAMVDLLGRAGRLNQAWDFIQKM---PIKPG 501
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-IEPSV-KHHTVVVNLLSRV---GQVDK 451
TV+ A+L AC V L + F+ F + P +H ++ N+ + G+V K
Sbjct: 502 ITVYGAMLGACKIHKNVDLG----EKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAK 557
Query: 452 ALNFINK--MPETP 463
+ K + +TP
Sbjct: 558 VRTIMEKSGLQKTP 571
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 184/298 (61%), Gaps = 4/298 (1%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
MLR + P+ T+ + K+ S + G +H + + G+E FV+ L D Y +G+
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGR 60
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
+ KVFDE PE++ + W ++ ++IG + A LF MMP+KN A+W +LI G
Sbjct: 61 IIESKKVFDEMPERD----IFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYG 116
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + DL+ A LF QM E+ ++SWT M+N ++QN + +AL +F QM+ G+ ++ T+
Sbjct: 117 YSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTM 176
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
+ +SACA +GAL+ G +H Y+ N F L IG++L+DMYAKCG+++ + LVF + +E
Sbjct: 177 ATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQE 236
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K+L W ++I GLA HG ++A++ F+KM +P+G F+++L AC ++G V+ L
Sbjct: 237 KNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVLNACAHAGLVEEGL 294
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 8/197 (4%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
LI S + ++ A +F +++ + ++ A+N F + F M++ + P+
Sbjct: 113 LIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPD 172
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+T V + A L L LG+ +H ++++G + D ++ L DMY + G + VF
Sbjct: 173 EVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFF 232
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKG 244
+ EKN + WN +I G + GY ++A+E+F M K N +++S+++ G
Sbjct: 233 KLQEKN----LFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVLNACAHAG 288
Query: 245 DLKKAGELFEQMPEKGV 261
+++ L ++ PE+G+
Sbjct: 289 LVEEGLALRKKAPERGI 305
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 5 VFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
VFN++ T I P + +T +IS + ++IH ++ +
Sbjct: 160 VFNQMIKTGICP-----------DEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDV 208
Query: 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
I + LI + S+D +L +F KNL +N +I GLA + + + + F M R
Sbjct: 209 YIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGRE 268
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
++PN +T+ V + A L+ G L
Sbjct: 269 KIKPNGVTFISVLNACAHAGLVEEGLAL 296
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 153/517 (29%), Positives = 249/517 (48%), Gaps = 76/517 (14%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIF 97
S S Q +Q+HAQ++ + ++ L + ++ D +L +F+ HF P +
Sbjct: 18 SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHD-SLRLFNTIHFPPA--LAW 74
Query: 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
+IR + + F+ ML + P+ +P V KS A L L+LG LH I++
Sbjct: 75 KSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIR 134
Query: 158 SGVEYDAFVRVHLADMYVQL------GKTR-GAFKVFDETPEKNKS-------------- 196
G+++D + L +MY +L G+ R GA +VFDE E+ +S
Sbjct: 135 VGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRK 194
Query: 197 -------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-------------------- 229
+ ++ WN +I G ++ G + + + M N
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254
Query: 230 ---------------------VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
VAS SLID + + + + +F + E+ +SW ++I
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVAS--SLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
G QNG ++ L F QML A ++ ++ S + ACA + L G ++H YI+ N F
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
I ++LVDMYAKCGNI A +F + +D+++WTAMI G A+HG+ AI+ F++M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G +P+ F+A+LTAC + G V A +F+SM D+ I P V+H+ V +LL R G+
Sbjct: 433 ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 492
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+++A +FI M P IW L ACR H + +A+
Sbjct: 493 LEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAE 529
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 14/266 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP ++ T + ++ LI + + ++IH I L A + + LI + + +
Sbjct: 236 KP-DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F T ++ +N +I G +N F + F ML ++P ++ + + A L+
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L LG+ LH I ++G + + F+ L DMY + G R A ++FD + + ++ W
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD----RMRLRDMVSWT 410
Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
+I GC+ G A+ELF M K N ++++++ G + +A + F M
Sbjct: 411 AMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRD 470
Query: 260 -----GVVSWTAMINGFSQNGEAEKA 280
GV + A+ + + G E+A
Sbjct: 471 FGIAPGVEHYAAVSDLLGRAGRLEEA 496
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 172/282 (60%), Gaps = 4/282 (1%)
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
C +G RK +F M +K+V SW S++ + R GD++ A E+F + P K +V+WTAM+
Sbjct: 190 CGDVGAARK---VFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMV 246
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
G++QN KAL +F +M + G+ ++ ++ A+SACA++GAL V FG
Sbjct: 247 TGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFG 306
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+G+ LVDMYAKCG I+ AS VF +EK++ T+++MI GLA HGR +AI FK+M
Sbjct: 307 NNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEM 366
Query: 389 M-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
+ + EP+ F+ +LTAC ++G V +F M+ Y I PS H+ +V+LL R G
Sbjct: 367 VNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAG 426
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
VD+AL+ + M TP +WGAL ACR H ++IAK+ +
Sbjct: 427 LVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAE 468
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 36/210 (17%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
QLG R A V + +V++ + L++ +K G + +A ++F M +KNV ++ S
Sbjct: 286 QLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSS 345
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRA 294
+I G + +G A +A+A+F +M++ A V
Sbjct: 346 MIAG-------------------------------LASHGRASEAIALFKEMVNRANVEP 374
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAAS 351
N T + L+AC+ G + G R + + +G+ + +VD+ + G + EA
Sbjct: 375 NHVTFIGVLTACSHAGMVGEG-RYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALD 433
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
LV + W A++ IHG+ E A
Sbjct: 434 LVRSMSVTPHGGVWGALLGACRIHGKSEIA 463
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ +L+ Y CG++ AA VF E EKD+++WT+++ G A + F +
Sbjct: 179 VENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVK- 237
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
D + A++T + AL FD M
Sbjct: 238 ---DMVAWTAMVTGYAQNAMPVKALEVFDRM 265
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/271 (18%), Positives = 108/271 (39%), Gaps = 18/271 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+ E +I + R++ +++ ++ + + I S + A +F
Sbjct: 176 HRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRS----AEEVF 231
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
K++ + ++ G A+N+ + F M L + + ++ + A L L
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+ + ++G + V L DMY + G A KVF EKN V ++ +I
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKN----VYTYSSMI 347
Query: 207 NGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK-G 260
G + G +A+ LF M + N +++ ++ G + + F QM +K G
Sbjct: 348 AGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYG 407
Query: 261 VVS----WTAMINGFSQNGEAEKALAMFFQM 287
++ + M++ + G ++AL + M
Sbjct: 408 IMPSADHYACMVDLLGRAGLVDEALDLVRSM 438
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 198/355 (55%), Gaps = 6/355 (1%)
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
++ G+ H ++ + G E + + Y++ G A +F+E P+K+ ++
Sbjct: 65 FDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKD----LVS 120
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +I+G ++ ++++ +LF MP + SW +I GFM+KG+ + A F++MPE+G
Sbjct: 121 WNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGT 180
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SW MI+G+ +NG ++ +F +ML+ G + T S L+ACA + L G ++H
Sbjct: 181 ISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQL 240
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQ 380
+ F AI AL+ MY++CG + A +F + +KDL++W A+I HGR +
Sbjct: 241 VE-KSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATK 299
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A+Q FK+M + P F+++L+AC +G V FD+M +Y I ++H+ +V
Sbjct: 300 ALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALV 359
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
NL+ R GQ+D AL IN MP PD +WGA AC K+ +A++A + ++N
Sbjct: 360 NLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTIN 414
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 67/307 (21%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGE--------------------------------- 251
MP K+ AS +++ GF + G L +A E
Sbjct: 1 MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60
Query: 252 ---LFEQMP--------------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
LF+ +P E+ VVSW +M+ + + G+ A A+F +M D + +
Sbjct: 61 AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 120
Query: 295 NDFTVVSALSACAKVGALEA---GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
+ T++S + + + E + + +S N ++ + + G E A
Sbjct: 121 WN-TMISGYTQASDMKESEKLFWEMPDPDTVSWN----------LIIQGFMQKGEAEHAR 169
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
F E+ ++W MI G +G Y +++ F KM+ G PD F ++L AC
Sbjct: 170 GFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIP 229
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ L + + P ++ + SR G ++ A +M D V W AL
Sbjct: 230 MLGLGAQIHQLVEKSFV--PDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNAL 287
Query: 472 FCACRTH 478
C H
Sbjct: 288 I-GCYEH 293
>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
[Cucumis sativus]
Length = 1830
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 146/511 (28%), Positives = 255/511 (49%), Gaps = 21/511 (4%)
Query: 1 MKGHVFNRLTTAIAPTTN-IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
++ + N L + P N ++ S + +NI + I+ + R++H QI+
Sbjct: 1190 IRWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVG- 1248
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
S + T LI ++ + ++F+ KN+ + +I G +N+ + + F
Sbjct: 1249 GPDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNR 1308
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
M V N T + + L L G+ +H +K+ E +F+ DMYV+ G+
Sbjct: 1309 MRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQ 1368
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG------MMPK------ 227
TR A ++DE P + ++ W V+I G ++ + LF ++P
Sbjct: 1369 TRDARMIYDELP----TIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALLQV 1424
Query: 228 --KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+ V +LID + + + A +F + EK V++W +MI+G++QNG A AL +F
Sbjct: 1425 FFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFN 1484
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKC 344
QM + + T+VS LSA A +GA++ G +H Y + F IGTAL++ YAKC
Sbjct: 1485 QMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKC 1544
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G+ +A +VF K+++TW+AMI G + G ++ F M+ +P+ +F +L
Sbjct: 1545 GDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVL 1604
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC YSG V+ +F SM DY PS+KH+ +V+LL+R G++D+AL+FI KMP D
Sbjct: 1605 SACSYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRD 1664
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
++GA C + + ++ ++ L+
Sbjct: 1665 VSLYGAFLHGCGLYSRFDLGEVVVREMLQLH 1695
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 172/410 (41%), Gaps = 71/410 (17%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
L + H +I+H L + T+L+ + A +FD + + + V+IR
Sbjct: 1136 LIKFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFL 1195
Query: 107 NSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
N F I F +R+S R + + + + K+ + L + GR +HC IVK G D+F
Sbjct: 1196 NDLFVDVIP-FYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGP-DSF 1253
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V L DMY + G+ + VF+E +KN V+ W +I G + + + LF M
Sbjct: 1254 VMTGLIDMYGKCGQVECSSAVFEEIMDKN----VVSWTSMIAGYVQNNCAEEGLVLFNRM 1309
Query: 226 PKKNVAS----------------------WV-----------------SLIDGFMRKGDL 246
V S WV + +D +++ G
Sbjct: 1310 RDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQT 1369
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +++++P +VSWT MI G++Q + L +F + + + N SAL
Sbjct: 1370 RDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPN-----SAL--- 1421
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ VR N AL+DMYAKC I A +F EKD++TW
Sbjct: 1422 --LQVFFQRVRFLN---------------ALIDMYAKCHTISDAYAIFHGVLEKDVITWN 1464
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+MI G A +G A++ F +M PD ++ L+A G +++
Sbjct: 1465 SMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVG 1514
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 223/445 (50%), Gaps = 35/445 (7%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLHIFNVL 100
S + + IHA L + + +L A++ + YA ++FD +N L
Sbjct: 19 SMRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTL 78
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
IR + ++ F M R S+ P+ ++ F+ KS + + L +H + K G
Sbjct: 79 IRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFT--MPLVHDIHGAVFKFGF 136
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
V+ L +Y G T A KVF++ +R ++
Sbjct: 137 CRHLHVQNALIHLYAVGGVTISARKVFEDA------------------------VRVGLD 172
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+ ++ SW L+ + G+L A ++F+ MPE+ VVSWT M++ +S+ +
Sbjct: 173 V-------DIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHET 225
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
L +F +M AGV ++ TV+S +SACA++G E G VH ++ N FG A+ +L+DM
Sbjct: 226 LDLFQEMRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDM 285
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y KCG +E A VF TK K L+TW AM+ A HG E A + F+ M+ SG PDG
Sbjct: 286 YGKCGCLEEAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTI 345
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
LA+L A + G V + F+SM+ DY +EP ++H+ VV++L R G++ +A N + MP
Sbjct: 346 LALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMP 405
Query: 461 ETPDFVIWGALFCACRTHKDTKIAK 485
+ VIWGAL ACR H D + +
Sbjct: 406 IPSNDVIWGALLGACRIHGDVGMGE 430
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 172/285 (60%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G++RKA +F M KN +W ++IDG+MR G + A ++F++MPE
Sbjct: 106 VMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPE 165
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMI GF + G E+ALA F +M +GV + +++AL+AC +GAL G+
Sbjct: 166 RDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWA 225
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF +++ +++W ++I G A +G
Sbjct: 226 HRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNA 285
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ +F M+ DY I P ++H
Sbjct: 286 NESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGC 345
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+V+L SR G+++ A+ + MP P+ V+ G+L ACR H + I
Sbjct: 346 LVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTI 390
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 117/270 (43%), Gaps = 46/270 (17%)
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
RK ++ + Q + +VSWT+ I S++ +A F M AG+ N T +S
Sbjct: 14 RKNNVNPKIQKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFIS 73
Query: 302 ALSACAKV--GALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASL---- 352
LSAC G+ +H Y +C GL + +GTA++ MY+K G++ A L
Sbjct: 74 LLSACGNFPSGSEALSDLLHGY-ACK-LGLDRSHVMVGTAILGMYSKRGHVRKARLVFDY 131
Query: 353 ---------------------------VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
VF E E+DL++WTAMI G G +E+A+ +F
Sbjct: 132 MEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWF 191
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNL 442
++M SG PD +A L AC G + L + S F +V+ +++L
Sbjct: 192 REMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDF----RNNVRVSNSLIDL 247
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALF 472
R G V+ A + M E V W ++
Sbjct: 248 YCRCGCVEFARQVFDTM-EKRTVVSWNSVI 276
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 20/284 (7%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A+ +FD ++L + +I G + + ++ F M V P+ + +
Sbjct: 153 VDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAA 212
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G H +V + V L D+Y + G A +VFD T EK +
Sbjct: 213 CTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFD-TMEK---RT 268
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
V+ WN +I G + G +++ F M K + ++ + G +++ + F+
Sbjct: 269 VVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQ 328
Query: 255 QMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M +S + +++ +S+ G E A+ + M ++ N+ + S L+AC
Sbjct: 329 MMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESM---PMKPNEVVIGSLLAACRNH 385
Query: 310 GALEA-GVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAAS 351
G R+ +IS D +KG L +MYA G E AS
Sbjct: 386 GNHTILAERLMKHIS--DLDVKGHSNYVILSNMYAADGKWEGAS 427
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 218/396 (55%), Gaps = 16/396 (4%)
Query: 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
A T + +H PS + +T +SLI + S QL+QIH+Q I L ++ + Q+I+
Sbjct: 4 ATTLSPPPTHLPS--LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC 61
Query: 74 SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
H+ ++YA +FD N ++N +I+G + S +S + ML V P+ T
Sbjct: 62 CKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYT 121
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
YPF+ K + + GR LH IVK G + FV+ L +Y G+ A VFD +
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLK 247
+ + V+ WNV+I+G ++ ++++LF M + V + VS++ + DL
Sbjct: 182 KGD----VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237
Query: 248 KAGEL----FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
+ F++MPE+ VSWTAMI+G+ Q ++ L++F +M A ++ ++FT+VS L
Sbjct: 238 VGKRVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 297
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
+ACA +GALE G + YI N+ + +G AL+DMY CGN+E A +F +D +
Sbjct: 298 TACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 357
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
+WTA+I+GLAI+G E+A+ F +M+ + PD +
Sbjct: 358 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVI 393
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/404 (24%), Positives = 164/404 (40%), Gaps = 132/404 (32%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK- 228
+LG A VFD P N +WN +I G S++G AV ++ G+MP +
Sbjct: 65 ELGDMEYARMVFDTMPGPNH----FVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEY 120
Query: 229 --------------------------------NVASWVSLIDGFMRKGDLKKAGELFEQM 256
NV +LI + G++ A +F++
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
+ VV+W MI+G++++ + ++++ +F +M V + T+VS LSAC+K+ L G
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGK 240
Query: 317 RVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
RVH NY F + E+D ++WTAMI G
Sbjct: 241 RVHRNY--------------------------------FDKMPERDFVSWTAMIDGYLQV 268
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA---LNFFD--SMRFDYFIE 430
R+++ + F++M + +PD ++ILTAC + G ++L + D ++ D F+
Sbjct: 269 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFV- 327
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPE----------------------------- 461
++++ G V+KA+ N MP
Sbjct: 328 -----GNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQM 382
Query: 462 -----TPDFVI-----------WGALFCACRTHKDTKIAKIALQ 489
TPD VI WG+L ACR H+D ++A++A Q
Sbjct: 383 LKASITPDEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQ 426
>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
Length = 679
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 202/391 (51%), Gaps = 6/391 (1%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ ++ A +F+ +N+ + +IRG ++ ++ + F+ M R V+ N +T V
Sbjct: 211 YGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVV 270
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
A SL+ G +HCL+++ G D F+ L MY + G A +F +K+
Sbjct: 271 LDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKD- 329
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
++ WN LI G + + A LF +MP+K+ SW S++ GF +G ++++ ELFEQ
Sbjct: 330 ---IVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQ 386
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MP K ++W A+++ NG A+ F QM G R N LSA A + L G
Sbjct: 387 MPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQG 446
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
++ H Y + A+ +LV MYAKCG + A VF L+ +MI A H
Sbjct: 447 LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQH 506
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G E A + F +M Y G P+ FL ILTAC +G V+ N+F+SMR Y I+P+ H
Sbjct: 507 GLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDH 566
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPET--PD 464
+T +V+LL R G +++AL N MP+ PD
Sbjct: 567 YTCMVDLLGRAGFLNEALEMTNSMPQKDYPD 597
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 168/359 (46%), Gaps = 22/359 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF---MLRLSV 125
L++S I A +FD +++ + L+ A+ + S + FVF LR +
Sbjct: 47 LLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLAS--ARFVFDDMPLRNAA 104
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
N L ++ + + L C K+ V Y A + LA + G R A
Sbjct: 105 SWNALVSLYLRAGRPAAA-----HALFCKAPAKNAVSYGAII-TGLA----RAGMLREAQ 154
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
V+ E P + + + N +I G + G L A+ +F M ++V SW +++DG + G
Sbjct: 155 AVYWEMPPRWRDP--VGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYG 212
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ +A LFE MPE+ VVSWT+MI G+ ++G L +F M GV+ N T+ L
Sbjct: 213 TVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLD 272
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
CA+ ++ G +VH + F +G +L+ MY++ G++ A +F +KD+++
Sbjct: 273 GCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVS 332
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
W ++I G + E A FK M E D + +++ G ++ ++ F+ M
Sbjct: 333 WNSLITGYVQNDMIEDAHVLFKLM----PEKDAISWTSMVVGFANRGWMRESVELFEQM 387
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 35/298 (11%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N L+ + G ++ A +LF MP ++V SW +L+ + G+L A +F+ MP +
Sbjct: 45 NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH--- 319
SW A+++ + + G A A+F + N + + ++ A+ G L V+
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCK----APAKNAVSYGAIITGLARAGMLREAQAVYWEM 160
Query: 320 ---------------NYISCNDFGLKGAI-----------GTALVDMYAKCGNIEAASLV 353
Y+ + G+ + +A+VD K G + A +
Sbjct: 161 PPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRL 220
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F E+++++WT+MI G HG Y + F M G + + +L C + V
Sbjct: 221 FEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLV 280
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
M F E ++++ + SR G + A + + M + D V W +L
Sbjct: 281 DEGSQVHCLMIRMGFAEDIFLGDSLII-MYSRFGSMADARSLFSFMNQK-DIVSWNSL 336
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
N A +L+ + R+G ++ A +LF++MP + V+SWTA++ ++ G A +F
Sbjct: 40 NRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVF---- 95
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNI 347
+D L+ A ALV +Y + G
Sbjct: 96 ------------------------------------DDMPLRNAASWNALVSLYLRAGRP 119
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
AA +F + K+ +++ A+I GLA G +A + +M +P G+ A++
Sbjct: 120 AAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRDPVGSN--AMIWGY 177
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G++ +AL FD M V + +V+ L + G V +A MPE + V
Sbjct: 178 LRGGELGMALRVFDGM-----AARDVISWSAMVDGLCKYGTVSEARRLFEAMPER-NVVS 231
Query: 468 WGAL 471
W ++
Sbjct: 232 WTSM 235
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 146/346 (42%), Gaps = 25/346 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT + ++ ++ + Q+H +I + LI S S+ A S+F
Sbjct: 263 NMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLF 322
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
K++ +N LI G +N + +H +F L P + + S V +
Sbjct: 323 SFMNQKDIVSWNSLITGYVQNDMIED--AHVLFKL----MPEKDAISWTSMVVGFANRGW 376
Query: 147 LGRGLHC---LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ + + VK + + A + +A+ G A + F + ++ + + ++
Sbjct: 377 MRESVELFEQMPVKDEIAWAAVMSSLVAN-----GNYVSAVRWFCQMSQEGCRPNTVAFS 431
Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L++ + + L + ++ + A SL+ + + G L +A +F +
Sbjct: 432 CLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHP 491
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
+++ +MI F+Q+G AE A +F +M G R N T + L+ACA+ G ++ G +
Sbjct: 492 SLIATNSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHG---Y 548
Query: 320 NYISC--NDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKD 361
NY + +G++ T +VD+ + G + A + +KD
Sbjct: 549 NYFESMRSVYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKD 594
>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/513 (28%), Positives = 253/513 (49%), Gaps = 15/513 (2%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIIS---LIHSSNSTKQLRQIHAQIILHNLFAS 62
+N + + +++ + + + I E +++S +I ++ + A+++ +
Sbjct: 129 WNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEE--ARVLFEEMEDR 186
Query: 63 SRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ IT T +I+ + A F +N+ + +I G N ++ + F+ M
Sbjct: 187 NVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMK 246
Query: 122 RLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY---DAFVRVHLADMYVQL 177
R S + PN T+ ++ + A + LG+ LH ++ +G+EY D + L MY
Sbjct: 247 RRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLF 306
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
G A VF++ + +S N +ING ++IG + KA ELF +P ++ +W S+I
Sbjct: 307 GAMDYAHYVFNKNLNSHAVQSC---NHMINGYTRIGQVEKARELFDTIPARDNITWTSMI 363
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G+ G++ +A LFE MP+K V+WT+MI+G QN KA + +ML G
Sbjct: 364 VGYFDIGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSS 423
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T A + L+ G ++HN + + +L+ MYAKCG I A +F
Sbjct: 424 TYAILFGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTNM 483
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
+DL++W MI GLA H + ++ F+ M+ SGT P+ FL IL+AC ++G V
Sbjct: 484 IYRDLISWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQGC 543
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F +MR Y I+P ++H+ ++NLL R G+V +A I +P + IWGAL C
Sbjct: 544 KLFKAMRDVYAIQPGLEHYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLGVCGV 603
Query: 478 -HKDTKIAKIALQSSCSLN-LSIPQAMSYCQTF 508
K+ IA+ A + L+ L+ P ++ C +
Sbjct: 604 AEKNADIAQHAARRLLELDPLNAPAHVALCNIY 636
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 79/333 (23%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y+Q G+ A +F+E PE+N V+ W ++ G + G + +A ELF MP++NV SW
Sbjct: 74 YLQCGRLSEARGLFEEMPERN----VVSWTSMLCGLADAGRICEARELFKEMPERNVVSW 129
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+++ G ++ DL++A +F+++PEK VVSW AMI GF++NG+ E+A +F +M D V
Sbjct: 130 NAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNV- 188
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
T ++ Y + G++ A
Sbjct: 189 --------------------------------------ITWTTMIAGYCRIGDVREAYCF 210
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACW---- 408
F E+++++WTAMI G +G Y +A+ F +M S P+G F+++ AC
Sbjct: 211 FCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRF 270
Query: 409 --------------------YSGQVKLAL----NFFDSMRFDYFI-EPSVKHHTV----- 438
Y G++ +L + F +M + +++ ++ H V
Sbjct: 271 HHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNH 330
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++N +R+GQV+KA + +P D + W ++
Sbjct: 331 MINGYTRIGQVEKARELFDTIP-ARDNITWTSM 362
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 173/278 (62%), Gaps = 3/278 (1%)
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G L A ++F MP KNV W S++ G++ G+L KA ELFE+ P K VV WTAMING
Sbjct: 4 KCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMING 63
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
+ Q ++A+A+F +M V+ + F +V+ L+ CA++GALE G +H YI +
Sbjct: 64 YVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVD 123
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+GT+L++MY+KCG IE A +F +EKD TWT++I GLA++G+ +A++ F KM
Sbjct: 124 AVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQ 183
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
PD F+ +L+AC + G V+ FF+SM Y IEP ++H+ +++LL R GQ+D
Sbjct: 184 VEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLD 243
Query: 451 KALNFINKMPETPDFVI---WGALFCACRTHKDTKIAK 485
+A I K+ + +I +G+L ACR +K+ ++ +
Sbjct: 244 EAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGE 281
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 134/309 (43%), Gaps = 28/309 (9%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++S + +D A +F+ K++ ++ +I G + +HF ++ F M V+
Sbjct: 27 TSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVK 86
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P++ + A + L G +H I + G+ DA V L +MY + G A ++
Sbjct: 87 PDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRI 146
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMR 242
F EK+ + W +I G + G KA+ELF M + + +++ ++
Sbjct: 147 FCGLREKDTA----TWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSH 202
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G +++ E F M E + + +I+ + G+ ++A + ++ V AN+
Sbjct: 203 GGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKI----VNANNE 258
Query: 298 TVV----SALSACAKVGALEAGVRVHNY---ISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+V S LSAC ++ G RV I D ++ T L ++YA G
Sbjct: 259 IIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRD----SSVHTLLANIYASAGRWVDV 314
Query: 351 SLVFGETKE 359
+ V E K+
Sbjct: 315 NRVRREMKD 323
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/487 (28%), Positives = 246/487 (50%), Gaps = 18/487 (3%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
+P+++ ++ L + + + +++ ++F+ L+S+ + SI
Sbjct: 54 QPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFS----WNALLSAYAKSGSIQNLK 109
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+ FD ++ +N I G + NS Q + F M R P T + + A LS
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLS 169
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L G+ +H I+ + F+ L DMY + G+ A +FD +KN ++ WN
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKN----LVSWN 225
Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
++I+G +K G K + L G MP + S ++I + + G + +A +F +
Sbjct: 226 LMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQCGRVDEARRVFSEFK 283
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
EK +V WTAM+ G+++NG E AL +F +ML + + +T+ S +S+CAK+ +L G
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
VH + +AL+DMY+KCG I+ A VF +++++W AMI G A +G
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
+ A++ F+ M+ +PD F+ IL+AC + ++ +FDS+ + + P++ H+
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYA 463
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN-- 495
+VNLL R G++++A+ I M PDF+IW L C T D A++A + L+
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523
Query: 496 LSIPQAM 502
+++P M
Sbjct: 524 IAVPYIM 530
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 30/265 (11%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H ++ T + ++S S + +H + IL L + +++ LI S ID A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
S+F+ +N+ +N +I G A+N H + + F ML+ +P+ +T+ +
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI------- 429
Query: 143 SLLSLGRGLHCLIVKSGVEY-DAFVRV--------HLADMYVQLGKTRGAFKVFDETPEK 193
L LHC ++ G EY D+ H A M LG+T +
Sbjct: 430 ----LSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
L+W+ L++ CS G + A LF + P V ++ L + + G K
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDV 544
Query: 250 GELFEQMPEKGV-----VSWTAMIN 269
+ M K V SW + N
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDN 569
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/510 (28%), Positives = 237/510 (46%), Gaps = 49/510 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLH 95
L+ ++ Q+HA + L + + A L + A FD +++
Sbjct: 77 LLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVP 136
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N ++ GL N+ + F M+ V + +T V L +L +H
Sbjct: 137 AWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYA 196
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
VK G++ + FV + D+Y +LG KVFD S ++ WN +I+G + G +
Sbjct: 197 VKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGM----SSRDLVTWNSIISGHEQGGQV 252
Query: 216 RKAVELFGMMPKKNVASWV----------------------------------------S 235
AVE+F M V+ V +
Sbjct: 253 ASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNA 312
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRA 294
++D + + ++ A +F+ MP + VSW +I G+ QNG A +A+ ++ M G++
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP 372
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
T VS L A + +GAL+ G R+H L +GT ++D+YAKCG ++ A L+F
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLF 432
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+T + W A+I G+ +HG +A+ F +M G PD F+++L AC ++G V
Sbjct: 433 EQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVD 492
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
NFF+ M+ Y I+P KH+ +V++ R GQ+D A +FI MP PD IWGAL A
Sbjct: 493 QGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGA 552
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504
CR H + ++ K+A Q+ L+ P+ + Y
Sbjct: 553 CRIHGNVEMGKVASQNLFELD---PKNVGY 579
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 24/297 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSK 137
I+ A +FD ++ +N LI G +N I + M + ++P + T+ V
Sbjct: 323 IEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLP 382
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ + L L G +H L +K+G+ D +V + D+Y + GK A +F++TP ++
Sbjct: 383 AYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP 442
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
WN +I+G G+ KA+ LF M ++ ++ ++VSL+ G + + F
Sbjct: 443 ----WNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFF 498
Query: 254 EQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
M + + M++ F + G+ + A M ++ + + L AC
Sbjct: 499 NMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNM---PIKPDSAIWGALLGACRI 555
Query: 309 VGALEAGVRVHNYISCNDFGLKGA-IG--TALVDMYAKCGNIEAASLVFGETKEKDL 362
G +E G S N F L +G + +MYAK G + V + ++L
Sbjct: 556 HGNVEMG----KVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 608
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 220/441 (49%), Gaps = 37/441 (8%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+ +R++HA+++ L L+S+ + + A FD ++LH+++ L+ +
Sbjct: 18 RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77
Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+ +S + + ML ++RP+ ++ + L L LGR LH S D
Sbjct: 78 SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
V+ L DMY + G + A KVFD IG
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFD----------------------SIGV--------- 166
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
KN W +LI G+ G +A +LF+ MP G+ +WTA+I+GF + G A+ +
Sbjct: 167 ----KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGL 222
Query: 284 FFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
F +M +R +D F + + + A + AL G ++H ++ F +G ALVDMY+
Sbjct: 223 FVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYS 282
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KC +I +A VF +D+++WT ++ G A HGR E+ + +M+ +G +P+ F+
Sbjct: 283 KCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVG 342
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
++ AC ++G V+ FDSM+ +Y ++P V+H+T ++LLSR G + +A I MP
Sbjct: 343 LIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYE 402
Query: 463 PDFVIWGALFCACRTHKDTKI 483
PD WGAL AC+ H DT++
Sbjct: 403 PDEATWGALLSACKKHNDTQM 423
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 147/517 (28%), Positives = 251/517 (48%), Gaps = 55/517 (10%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N+++S N T +S+ + Q+H+ + L + L++ + +
Sbjct: 232 NMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQ 291
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+D A +F+ +L +N +I G +N F F M R RP+ +T +
Sbjct: 292 CLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLP 351
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
++ L+ L G+ +H IV++ V D F+ L D+Y + R A ++D ++
Sbjct: 352 ALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA----RAI 407
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVS------------------ 235
V++ + +I+G G +A+++F + K N + S
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIH 467
Query: 236 -----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
L+D + + G L + +F +M +K V+W +MI+ FSQNG+ +
Sbjct: 468 GYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQ 527
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---- 334
+AL +F QM G++ N+ T+ +ALSACA + A+ G +H +KG I
Sbjct: 528 EALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVT------IKGPIKADIF 581
Query: 335 --TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+AL+DMYAKCGN+E A VF +K+ ++W ++I HG ++++ M G
Sbjct: 582 AESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEG 641
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+PD FLA+++AC ++G V+ + F M Y I P ++H +V+L SR G++DKA
Sbjct: 642 YKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKA 701
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ FI MP PD IWGAL ACR H++ ++A IA Q
Sbjct: 702 IQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQ 738
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/518 (25%), Positives = 226/518 (43%), Gaps = 70/518 (13%)
Query: 49 QIHAQIIL------HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI----FN 98
QIHA+ ++ HN A + T+L+ L + A+++F P+ +N
Sbjct: 53 QIHARAVVSGALSDHNHLA---LHTRLLGMYVLARRFRDAVAVFSAL-PRAAAASSLPWN 108
Query: 99 VLIRGLAENSHFQSCISHFVFMLR--LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
LIRG + +V M + P+ T P+V KS A+L +SLGR +H
Sbjct: 109 WLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTAR 168
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
G+ D +V L MY G A FD PE++ +LWNV+++GC K G +
Sbjct: 169 AIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERD----CVLWNVMMDGCIKAGDVD 224
Query: 217 KAVELF-----------------------------------------GMMPKKNVASWVS 235
AV LF G+ P+ VA+ +
Sbjct: 225 GAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVAN--T 282
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+ + + L A LFE MP+ +V+W MI+G QNG +A +F+ M +G R +
Sbjct: 283 LLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPD 342
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T+VS L A + L+ G VH YI N + + +ALVD+Y KC ++ A ++
Sbjct: 343 SITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYD 402
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ D++ + MI G ++G E+A+Q F+ ++ +P+ ++L C + L
Sbjct: 403 AARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPL 462
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ + + E + ++++ ++ G++D + KM + D V W ++ +
Sbjct: 463 GQQIHGYVLRNAY-ERKCYVESALMDMYAKCGRLDLSHYIFLKMSQK-DEVTWNSMISSF 520
Query: 476 RTHKDTKIAKIALQSSCSL-----NLSIPQAMSYCQTF 508
+ + A + C N++I A+S C +
Sbjct: 521 SQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASL 558
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 141/455 (30%), Positives = 232/455 (50%), Gaps = 36/455 (7%)
Query: 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
SS S +LR+IHA +++ AS ++S + + YA + P L N
Sbjct: 26 SSQSQFRLREIHAHLLVSGRLASPSHHADFVASLASSSHLSYARLLLPQ-RPATLLAHNG 84
Query: 100 LIRGLAENSHFQSCIS-HFVFMLRLSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCL 154
L+R LA C F L + P+ ++ F+ ++ SL+ + +
Sbjct: 85 LLRALARGP----CPGLAFAAFRELPLAPDHYSFTFLVRAATSLAAAASATPVPTDVAVN 140
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
++ V AF H D +VQ G V D +G
Sbjct: 141 LLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGD-----------------------VGA 177
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+R A F + +V +++ GD+ A ELF+ MP++ V+W AM+ G+ +
Sbjct: 178 VRAA---FAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRV 234
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G + +AL +F +M AGV ++ T+VS L+ACA++GALE G+ VH+Y+ + +G
Sbjct: 235 GRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLG 294
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
TALVDMY+KCG + + VF +E+++ TWT+ + GLA++G E+ ++ FK+M +G E
Sbjct: 295 TALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGME 354
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+G F+A+L C +G V+ FDSM+ + +EP ++H+ +V+L R G++D A++
Sbjct: 355 PNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVD 414
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
FIN MP P +WGAL A R H + + K A+
Sbjct: 415 FINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMH 449
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 20/245 (8%)
Query: 29 ITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
++E ++S++ + L + +H+ + + S + T L+ S + ++ +
Sbjct: 254 VSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEV 313
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ +N++ + + GLA N + C+ F M + PN +T+ V + + L+
Sbjct: 314 FETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLV 373
Query: 146 SLGRG-LHCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
GR + K VE Y V D+Y + G+ A + P +
Sbjct: 374 EEGRACFDSMKDKHKVEPWLEHYGCMV-----DLYGRAGRLDDAVDFINSMPVEPHEG-- 426
Query: 200 LLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W L+N + + + A+ + KN A+ V L + + + K ++ M
Sbjct: 427 -VWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMM 485
Query: 257 PEKGV 261
KGV
Sbjct: 486 KSKGV 490
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 142/471 (30%), Positives = 232/471 (49%), Gaps = 56/471 (11%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT-QLISSASLHKSIDYALSIFD 87
I T I + H + KQ QIH ++ T L + ++++ + SI
Sbjct: 2 ILTTCIATPTHHPDPPKQPPQIHPPSTFSPPNNPNKNQTLSLKHKPNSNQTVSWTSSISH 61
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA---SLSL 144
H +N++F S F+ ML V PN +T + + A S +
Sbjct: 62 H----------------CKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTS 105
Query: 145 LSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
++ G LH K G D V L DMY +
Sbjct: 106 ITFGAALHTHAFKHGFAMNDVMVGTALIDMYAK--------------------------- 138
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
C K+ Y R +F M +N+ SW ++IDG+M+ GD+ A +LF+++P K VVS
Sbjct: 139 -----CGKLDYARL---VFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVS 190
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
WT +I GF + E+AL F +M AGV + TV++ +SACA +GAL G+ VH +
Sbjct: 191 WTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVM 250
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+F + +L+DMYA+CG IE A VF +++L++W ++I G A++G ++A+
Sbjct: 251 KKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALS 310
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
+F+ M G EP+G + + LTAC ++G + L F ++ D+ P ++H+ +V+L
Sbjct: 311 FFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLY 370
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
SR G++ +A + I KMP P+ V+ G+L ACRT D ++A+ ++ L
Sbjct: 371 SRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVEL 421
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 19/295 (6%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
+D AL +FD KN+ + V+I G + ++ + F M V P+ +T +
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A+L L LG +H L++K + V L DMY + G A +VFD ++N
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRN--- 288
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELF 253
++ WN +I G + G KA+ F M K+ N S+ S + G + + ++F
Sbjct: 289 -LVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIF 347
Query: 254 EQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+ + + +++ +S+ G ++A + +M + N+ + S L+AC
Sbjct: 348 ADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKM---PMMPNEVVLGSLLAACRT 404
Query: 309 VGALEAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
G +E +V Y + G + ++YA G + AS V E KE+ L
Sbjct: 405 QGDVELAEKVMKYQVELYPGGDSNYV--LFSNIYAAVGKWDGASKVRREMKERGL 457
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 176/285 (61%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ +I SK G + KA +F M KN +W ++IDG+MRKG + A +LF++MPE
Sbjct: 105 VMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPE 164
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+G++SWTAMINGF + G E+AL F +M +GV + +++ L+AC +GAL G+ V
Sbjct: 165 RGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWV 224
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + + +D++ +CG +E A VF +++ +++W ++I + +G
Sbjct: 225 HRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHA 284
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
++++ YF++M G +P+ F LTAC + G V+ L +F +M+ +Y I P ++H+
Sbjct: 285 DESLVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGC 344
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+V+L SR G+++ ALN + MP P+ V+ G+L ACRTH + +
Sbjct: 345 LVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHGNNTV 389
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 118/284 (41%), Gaps = 71/284 (25%)
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GALEAGVRV 318
+SWT+ I S+NG +A F M AGV N T ++ LS C G+ G +
Sbjct: 32 TISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLL 91
Query: 319 HNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLV---------------------- 353
H Y +C GL +GTA++ MY+K G + A LV
Sbjct: 92 HGY-ACK-LGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRK 149
Query: 354 ---------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
F E E+ L++WTAMI G G +E+A+ +F++M SG EPD +A+L
Sbjct: 150 GKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVL 209
Query: 405 TACWYSGQVKLAL---------NFFDSMR---------------------FDYFIEPSVK 434
AC G + L +F +++R FD+ + +V
Sbjct: 210 AACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVV 269
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
V+ + S G D++L + +M E P+ V + AC
Sbjct: 270 SWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTAC 313
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 244/488 (50%), Gaps = 60/488 (12%)
Query: 84 SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
++F+ + K N+ +N +I LA + + F M +LS++PNR T+P KS ++L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165
Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L GR H + G E D FV L DMY + G+ R A +FDE +N ++ W
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN----IVSW 221
Query: 203 NVLING-------------------------------------------CSKIGYLRKAV 219
+I G CS++
Sbjct: 222 TSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITE 281
Query: 220 ELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
+ G + K+ ++ +L+D + + G+L + +F+ M E+ V+SW ++I ++QNG
Sbjct: 282 GVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNG 341
Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI- 333
+ +++ +F +M+ D + N T+ + L ACA G+ G +H+ + GL+ +
Sbjct: 342 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVI--KMGLESNVF 399
Query: 334 -GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
GT+++DMY KCG +E A F +EK++ +W+AM+ G +HG ++A++ F +M +G
Sbjct: 400 VGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG 459
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
+P+ F+++L AC ++G ++ ++F +M ++ +EP V+H+ +V+LL R G + +A
Sbjct: 460 VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA 519
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512
+ I M PDFV+WGAL ACR HK+ + +I+ + L+ P+ Y
Sbjct: 520 FDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELD---PKNCGYYVLLSNIY 576
Query: 513 GDGRTWRE 520
D W +
Sbjct: 577 ADAGRWED 584
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 56/379 (14%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ H Q ++ +++ L+ S + A ++FD + +N+ + +I G +N
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231
Query: 108 SHFQSCISHF-VFMLRLS-------VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
+ F F++ S V + + V + + +S S+ G+H ++K G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
E D V L D Y + G+ + +VFD E++ V+ WN +I ++ G +++
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD----VISWNSIIAVYAQNGMSTESM 347
Query: 220 ELFGMMPKK----------------------------------------NVASWVSLIDG 239
E+F M K NV S+ID
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDM 407
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G ++ A + F++M EK V SW+AM+ G+ +G A++AL +F++M AGV+ N T
Sbjct: 408 YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITF 467
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGE 356
VS L+AC+ G LE G +S ++F ++ + +VD+ + G + EA L+ G
Sbjct: 468 VSVLAACSHAGLLEEGWHWFKAMS-HEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526
Query: 357 TKEKDLLTWTAMIWGLAIH 375
D + W A++ +H
Sbjct: 527 KLRPDFVVWGALLGACRMH 545
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 19/254 (7%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K N +T + ++ S S + + IH Q+I L ++ + T +I
Sbjct: 354 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGK 413
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A FD KN+ ++ ++ G + H + + F M V+PN +T+ V +
Sbjct: 414 VEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 473
Query: 139 VASLSLLSLG----RGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
+ LL G + + H V+ GVE H M LG+ + FD
Sbjct: 474 CSHAGLLEEGWHWFKAMSHEFDVEPGVE-------HYGCMVDLLGRAGYLKEAFDLIKGM 526
Query: 194 NKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
++W L+ C +G + A +LF + P KN +V L + + G +
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEI-SARKLFELDP-KNCGYYVLLSNIYADAGRWED 584
Query: 249 AGELFEQMPEKGVV 262
+ M G+V
Sbjct: 585 VERMRILMKNSGLV 598
>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Vitis vinifera]
Length = 531
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/452 (32%), Positives = 217/452 (48%), Gaps = 67/452 (14%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
KQ++Q+H+ +I + + L A+L ++N LIRG
Sbjct: 28 KQIKQVHSLLITNGHLLPCSNASNLKWMATL--------------------LYNSLIRGY 67
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS---LLSLGRGLHCLIVKSGVE 161
+ F ML PN LT+P + K AS S +G LH ++K G+
Sbjct: 68 LNFVEPHKTLLIFTHMLAHQAPPNNLTFPSIIKKAASCSPSLAFMIGTPLHTHVIKRGLS 127
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+D F++ L +Y +L K A +VF+E
Sbjct: 128 HDLFIQTSLVVLYARLCKVSDACRVFEE-------------------------------- 155
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
+ + V S +++D + GD+ A LFE MPE+ VVSWT++INGF +N E+A+
Sbjct: 156 ---ISRPCVVSSNAMLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAI 212
Query: 282 AMFFQML------DAGVRANDFTVVSALSACAK---VGALEAGVRVHNYISCNDFGLKGA 332
F +M+ V+ N+ T VS LS+C VGAL G ++H YI N+
Sbjct: 213 QFFVKMMGHEDVRSCLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVF 272
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+GTAL+ +Y K G +E A +F K + TW AMI LA +GR +QA+ F+KM G
Sbjct: 273 MGTALIALYGKTGCLENAMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMQG 332
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
PD F+A++TAC S V L L FF SM D+ + P + H+ VV+LL R G +++A
Sbjct: 333 LCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMVHYGCVVDLLGRAGLLEEA 392
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
FI +MP PD + GAL AC+ H ++
Sbjct: 393 TEFIKRMPFEPDATVLGALLGACKVHGAIELG 424
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 199/390 (51%), Gaps = 34/390 (8%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
LI + + + F ML + P+ +T V + + L L LG LH L+ + G
Sbjct: 211 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKG 270
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ + V L DMY + G A +VFD + +S
Sbjct: 271 MSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS--------------------- 309
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
W ++IDG+ + G + A LF+QM + ++++ +MI G+ +G+ +
Sbjct: 310 -------------WNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLRE 356
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F M +R ++FTVVS LSACA +GAL G +H I IGTAL+D
Sbjct: 357 ALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLD 416
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG + A++VF ++D+ WTAMI GLA +G + ++YF +M G +P+
Sbjct: 417 MYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVS 476
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++A+LTAC +S + +FD MR Y I P ++H+ +++LL R G +D+A++ + M
Sbjct: 477 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 536
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P P+ VIW ++ ACR HK +A+ A +
Sbjct: 537 PMQPNSVIWASILSACRVHKRIDLAQCAAE 566
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 124/539 (23%), Positives = 235/539 (43%), Gaps = 53/539 (9%)
Query: 26 SNNITET-HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
++ I ET H S I ST + Q+H +++ L + + + L++ +S +LS
Sbjct: 790 ASGIRETPHTFSTILGVCSTYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLS 849
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLS 143
+F +N + NV++RGL + I F+ M R + N L+Y + K +
Sbjct: 850 LFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 909
Query: 144 LLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L GR LH +++K+G + + F+ L D+Y +G + K ++ SE V+ W
Sbjct: 910 WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI----LSEDVISW 965
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGD----------L 246
N +++ + G++++AV G MP ++ S+VSL+ + GD +
Sbjct: 966 NSILSMYADRGHMKEAVYYLKQMLWHGKMP--SIRSFVSLLALSGKTGDWQLGVQIHGIV 1023
Query: 247 KKAG--------------------------ELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
K G +F ++P + ++I + + A
Sbjct: 1024 HKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAA 1083
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACA--KVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
L + M+ GV +D T + + A + +L + +H+ + F + A+ ++L+
Sbjct: 1084 LEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLI 1143
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
YA G + ++ L+F + +++ +TA+I A +G +A++ F +M+ SG +PD
Sbjct: 1144 TAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNV 1203
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
FL + C +G + + MR ++P +H +VNLLSR G V +A+ + +
Sbjct: 1204 TFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQ 1263
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517
P W +L +C+ H + + K A + P F GD T
Sbjct: 1264 SPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRET 1322
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 177/404 (43%), Gaps = 65/404 (16%)
Query: 40 SSNSTKQLRQIHAQI-----ILHNLFAS---SRITTQLISSASLHKSIDYALSIFDHFTP 91
+ + +Q ++HA + +LH A + + L S LH + YAL +FD P
Sbjct: 8 TPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLH--LRYALHLFDRM-P 64
Query: 92 KNLHIFNVLIRGL--AENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSL 147
+ +F+ +R A S I +F M R +VRP+ T+ F+ K +S S
Sbjct: 65 ASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSS----SR 120
Query: 148 GRGLHCLIVKSGV------EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
R L C ++ + FV L MY +LG + FDE
Sbjct: 121 PRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDE------------ 168
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+P K+ SW +I G + G L A L Q P + V
Sbjct: 169 -----------------------IPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDV 205
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SWT++I +S+ A++A+ F ML G+ +D TV+ LSAC+++ LE G +H+
Sbjct: 206 ISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSL 265
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQ 380
+ + + AL+DMYAKCG+ A VF + + +W A+I G HG +
Sbjct: 266 VKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDV 325
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
A F +M D F +++T +SGQ++ AL F +MR
Sbjct: 326 ARSLFDQMEVR----DIITFNSMITGYIHSGQLREALLLFMNMR 365
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 16/240 (6%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H +D A S+FD +++ FN +I G + + + F+ M R +R + T +
Sbjct: 320 HGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSL 379
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ ASL L GR LH I VE D ++ L DMY++ G+ A VF +++
Sbjct: 380 LSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRD- 438
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE 251
V W +I G + G + +E F M + N S+++++ L +
Sbjct: 439 ---VHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRL 495
Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
F++M + + MI+ ++G ++A+ + M ++ N S LSAC
Sbjct: 496 YFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILSAC 552
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M + V S MI GF ++G A++A A++ M+ +G+R T + L C+ AL+
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLH 816
Query: 316 VRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
RV + CN F +G+ALV+ Y + A+ +F E ++ ++ GL
Sbjct: 817 GRVLALGLCCNPF-----VGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGN 871
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
E+ I F M E +G + + C+ +G+
Sbjct: 872 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 909
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 27/268 (10%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
+L A+ N++ +N T ++S S + Q R +HA I L + I T
Sbjct: 353 QLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGT 412
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ ++ A +F +++H + +I GLA N ++ + +F M +P
Sbjct: 413 ALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQP 472
Query: 128 NRLTYPFVSKSVASLSLLSLGR----------GLHCLIVKSGVEYDAFVRVHLADMYVQL 177
N ++Y V + + LL+ GR +H I G D R L D + L
Sbjct: 473 NPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 532
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVE-LFGMMPKKNVASW 233
KT P + S ++W +++ C +I + A E L + P ++ A +
Sbjct: 533 VKT---------MPMQPNS---VIWASILSACRVHKRIDLAQCAAEHLLKIEPDED-AVY 579
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV 261
V L + + + A ++ M E+ V
Sbjct: 580 VQLYNICIDSRKWEDASKIRMLMEERQV 607
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 254/498 (51%), Gaps = 24/498 (4%)
Query: 1 MKGHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ Q HA I++ L
Sbjct: 235 MVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGL 294
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA IFD K++ +N+LI G + Q + ++
Sbjct: 295 ELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQ----QGLVEDAIY 350
Query: 120 MLRLSVRPNRLTYPFVS-----KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M +L +R +L Y V+ + A L LG+ + C + +E D + DMY
Sbjct: 351 MCQL-MRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMY 409
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NV 230
+ G A KVFD T EK+ ++LWN L+ ++ G+ +A+ LF M + NV
Sbjct: 410 AKCGSIVDAKKVFDSTVEKD----LILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNV 465
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQ 286
+W +I +R ++ +A E+F QM G+ +SWT M+NG QNG +E+A+ +
Sbjct: 466 ITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEEAIHFLRK 525
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCG 345
M ++G+R N F++ ALSA A + + G +H YI N +I T+LVDMYAKCG
Sbjct: 526 MQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSLVDMYAKCG 585
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I A VF +L + AMI A+ G +A+ ++ + G +PD F ++L+
Sbjct: 586 DINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXKPDSITFTSLLS 645
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
AC ++G + A+ F M ++ ++P ++H+ ++V+L + + DKAL + +MP PD
Sbjct: 646 ACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVDLFASAKETDKALRLMEEMPYKPDX 705
Query: 466 VIWGALFCACRTHKDTKI 483
+ +L +C T++
Sbjct: 706 RMIQSLVASCNKQHKTEL 723
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 212/458 (46%), Gaps = 50/458 (10%)
Query: 48 RQIHAQIILH-NLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + +L+A + I T+L+ + ++ A +F +N+ + +I
Sbjct: 79 KQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKC 138
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H ++K+G+E F
Sbjct: 139 RMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVF 198
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE PE+N V+ WN L+ G + G +A+ L M
Sbjct: 199 VASSLADMYGKCGVLDDARKVFDEIPERN----VVAWNALMVGYVQNGMNEEAIRLLSDM 254
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K V SL++ + + G +
Sbjct: 255 RKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLI 314
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 315 EYAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAA 374
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A+ L+ G V C L+ I + +DMYAKCG+I A VF T EKDL+
Sbjct: 375 ARTENLKLGKEVQ--CXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLIL 432
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W ++ A G +A++ F +M P+ + I+ + + +V A F M+
Sbjct: 433 WNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQ 492
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N + + G ++A++F+ KM E+
Sbjct: 493 -SSGITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQES 529
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 139 RMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVF 198
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++PE+ VV+W A++ G+ QNG E+A+ + M G
Sbjct: 199 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDG 258
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V TV + LSA A + +E G + H N L +GT+L++ Y K G IE A
Sbjct: 259 VEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 318
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
++F EKD++TW +I G G E AI + M + D +++A +
Sbjct: 319 MIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 378
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+KL F + +E + + +++ ++ G + A + E D ++W L
Sbjct: 379 NLKLGKE-VQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTL 436
Query: 472 FCA 474
A
Sbjct: 437 LAA 439
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 206/380 (54%), Gaps = 27/380 (7%)
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
+ +RP+ ++ V + AS+ G+ +H + V+SG D FV L DMY + G
Sbjct: 7 IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
A KVFD EK+ V+ WN ++NG S+IG A+ LF M ++ NV SW ++I
Sbjct: 67 ASKVFDRIKEKD----VVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRAND 296
F ++G + ++F +M Q+GEA AL +F M D V+ N
Sbjct: 123 AFAQRGLGCETLDVFREM----------------QHGEANDALELFSWMFKQDGLVKPNC 166
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFG 355
FT+ AL ACA++ AL G ++H YI N F + L+DMYAK G+I+ A VF
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
K+K+ ++WT+++ G +HGR ++A++ F +M G +PDG L +L AC +SG +
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
+ FF+SM ++ + P +H+ +V+LL R G++++A+ I M P ++W AL C
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGC 346
Query: 476 RTHKDTKIAKIALQSSCSLN 495
R H + ++ + A + LN
Sbjct: 347 RIHANVELGEHAAKQLLELN 366
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 167/365 (45%), Gaps = 33/365 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +H + F + L+ + +D A +FD K++ +N ++ G ++
Sbjct: 33 KAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQI 92
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
F+ + F M ++ N +++ V + A RGL C + D F
Sbjct: 93 GRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ-------RGLGCETL------DVFRE 139
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN---KSESVLLWNVLINGCSKIGYLRKAVELFGM 224
+ Q G+ A ++F +++ K + LI C+++ LR ++
Sbjct: 140 M-------QHGEANDALELFSWMFKQDGLVKPNCFTISCALI-ACARLAALRLGRQIHAY 191
Query: 225 MPKKNVAS---WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
+ + + S +V+ LID + + GD+ A +F+ + +K VSWT+++ G+ +G ++
Sbjct: 192 ILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKE 251
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTA-L 337
AL +F +M G++ + T++ L AC+ G ++ G+ N +S +FG + G A +
Sbjct: 252 ALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMS-KEFGVIPGQEHYACM 310
Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
VD+ + G + EA L+ G E + W A++ G IH E K+++ +E D
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370
Query: 397 GTVFL 401
G+ L
Sbjct: 371 GSYTL 375
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 73/136 (53%)
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
D +R + ++V+ L ACA +GA G VH + +G ALVDMYAKCG ++
Sbjct: 6 DIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVD 65
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
AS VF KEKD+++W AM+ G + GR+E A+ F+KM E + + A++ A
Sbjct: 66 EASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFA 125
Query: 409 YSGQVKLALNFFDSMR 424
G L+ F M+
Sbjct: 126 QRGLGCETLDVFREMQ 141
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 236/488 (48%), Gaps = 68/488 (13%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
+ L+ A H +D+AL IF +++ +N++I L+++ + + V M VR
Sbjct: 230 SMLVGYAKSH-GVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVR 288
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ TY + A LS L G+ LH ++++ D +V + ++Y + G + A +V
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRV 348
Query: 187 FDETPEKNK----------------SESVLLWN---------------VLINGC------ 209
F ++N SESV L+N LI+GC
Sbjct: 349 FSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDI 408
Query: 210 -----------------------------SKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
+K G L+ A +F M ++++ SW +I +
Sbjct: 409 CLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAY 468
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTV 299
+ G++ KA E F+ M + V++W AM+ + Q+G E L M+ ML + V + T
Sbjct: 469 SQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
V+ CA +GA + G ++ + L ++ A++ MY+KCG I A F
Sbjct: 529 VTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR 588
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
KDL++W AMI G + HG +QAI+ F ++ G +PD ++A+L+ C +SG V+ +
Sbjct: 589 KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFY 648
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
FD M+ D+ I P ++H + +V+LL R G + +A N I++MP P +WGAL AC+TH
Sbjct: 649 FDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 708
Query: 480 DTKIAKIA 487
+ +A++A
Sbjct: 709 NNDLAELA 716
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 188/432 (43%), Gaps = 67/432 (15%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVS 136
S+ A+ +F +++ +N ++ G ++ F + + FV M + PN T+ V
Sbjct: 107 SLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVM 166
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
KS +L + L L+ K + D V+ L DM V+ G A K F + K+
Sbjct: 167 KSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQF----SRIKN 222
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+++ N S++ G+ + + A E+F+ M
Sbjct: 223 PTIICRN-------------------------------SMLVGYAKSHGVDHALEIFKSM 251
Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
PE+ VVSW +I+ S++G +AL M M GVR + T S+L+ACA++ +LE G
Sbjct: 252 PERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311
Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
++H + N + + +A+V++YAKCG + A VF ++++ ++WT +I G +G
Sbjct: 312 QLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYG 371
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTA----------------CWYSGQVKLAL--N 418
+ ++++ F +M D +++ C SG + + N
Sbjct: 372 CFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSN 431
Query: 419 FFDSMR------------FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
SM F++ E + T ++ S+VG + KA F + M T + +
Sbjct: 432 SLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDM-STRNVI 490
Query: 467 IWGALFCACRTH 478
W A+ A H
Sbjct: 491 TWNAMLGAYIQH 502
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 66/303 (21%)
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF-DETPEKNK 195
+S + S L+ R LH ++ G+ F++ L Y+ G A + DE E N
Sbjct: 33 RSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN- 91
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
V+ N+++NG +K+G L AVELFG MP ++VASW +++ G+ + G A ++F
Sbjct: 92 ---VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M Q G++ N FT + +C +G E
Sbjct: 149 M---------------RQTGDS---------------LPNAFTFGCVMKSCGALGWHEVA 178
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK----------------- 358
+++ +S D + TALVDM +CG ++ AS F K
Sbjct: 179 LQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238
Query: 359 --------------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
E+D+++W +I L+ GR +A+ M G PD T + + L
Sbjct: 239 HGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSL 298
Query: 405 TAC 407
TAC
Sbjct: 299 TAC 301
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNI-EAASLVFG 355
+ AL +C AL +H+ + + GL + L+ Y CG + +A +L+
Sbjct: 28 LADALRSCGARSALTGARTLHSRLI--NVGLASVVFLQNTLLHAYLSCGALSDARNLLRD 85
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E E +++T M+ G A G A++ F +M D + I++ + SGQ
Sbjct: 86 EITEPNVITHNIMMNGYAKLGSLSDAVELFGRM----PTRDVASWNTIMSGYYQSGQFLN 141
Query: 416 ALNFFDSMR 424
AL+ F SMR
Sbjct: 142 ALDIFVSMR 150
>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
Length = 580
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 250/527 (47%), Gaps = 74/527 (14%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSI--DYALSIFDHFTPKN 93
++SS KQ QIHAQI+++ L S + Q+ S I Y I H +
Sbjct: 9 FLNSSVHVKQATQIHAQILVNGLPNLESCLVRQITRSQFTCARIVSRYLQRILHHSRNPD 68
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ +R ++N F I+H+V M RL + P+ ++ + G +H
Sbjct: 69 AFTWACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGWCIHA 128
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
+ K G +V+ L D Y +LG A KVFDE EKN V+ WN +++G KIG
Sbjct: 129 QVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKN----VVSWNSILSGYVKIG 184
Query: 214 YLRKAVELFGMMP-------------------------------KKNVASWVSLIDGFMR 242
L A +LF MP +K+ ASW ++I G++
Sbjct: 185 NLVDAQKLFDEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVN 244
Query: 243 KGDLKKAGELFEQMP---------------------------------EKGVVSWTAMIN 269
GD+K A LF+ MP EK ++S+ AMI
Sbjct: 245 CGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIA 304
Query: 270 GFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
+SQN KAL +F ML ++ ++ T S +SAC ++G L G + +Y+
Sbjct: 305 CYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGI 364
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
L + TALVD+YAK GNI A +F K++DL+ ++AMI+G I+ + +AI+ FK+
Sbjct: 365 ELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKE 424
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ P+ + +LTA ++G V F SM+ D+ + P H+ ++V+LL R G
Sbjct: 425 MLRVNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSMK-DHGLAPLADHYGIMVDLLGRAG 483
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
++++A I+ MP P+ +WGAL AC+ H + ++ +IA ++ L
Sbjct: 484 RLEEAYELIHSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKL 530
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 8/176 (4%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T L+ + +I+ A +F+ ++L ++ +I G NS I F MLR++
Sbjct: 370 LATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVN 429
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ PN +TY + + L+ G + G+ A + D+ + G+ A+
Sbjct: 430 ICPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKDHGLAPLADHYGIMVDLLGRAGRLEEAY 489
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
++ P + + +W L++ C L VEL G + +N + V+ G+
Sbjct: 490 ELIHSMPVQPNAG---VWGALLHACK----LHNNVEL-GEIAARNCSKLVTDTTGY 537
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/472 (30%), Positives = 232/472 (49%), Gaps = 50/472 (10%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---- 78
H+ NN I L+ S + L+QIHA ++ L S L+ A+
Sbjct: 3 HQTFNNA----ISPLLRKCKSVQHLKQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDS 58
Query: 79 -IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
YA IF + +N+ ++N +IRG + + I ++ ++ N+ T+P + K
Sbjct: 59 FFSYACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIK 118
Query: 138 SVASL--SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ A + L +G +H ++ G E DAFV L + Y +FD
Sbjct: 119 ACALVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFY----------SLFD------- 161
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
L+ A LF K+V W ++DG+ + GD++ A LF++
Sbjct: 162 -------------------LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDE 202
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ V+SW+AM+ +S+ + + L +F QM + ND + S L+ACA +GA+ G
Sbjct: 203 MPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGAITQG 262
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+ +H+Y + TALVDMY+KCG IE+A VF KD W AMI G A+
Sbjct: 263 LWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMT 322
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G ++++ F KM+ SGT+ F++IL AC ++ V+ L FFD M Y ++P +H
Sbjct: 323 GNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEH 382
Query: 436 HTVVVNLLSRVGQVDKALNFI-NKMP--ETPDFVIWGALFCACRTHKDTKIA 484
+ VV+L++R G V+ A F+ KM D +WGA+ ACR +++ +I
Sbjct: 383 YACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIG 434
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 224/442 (50%), Gaps = 33/442 (7%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLHIFNVLIR 102
+ L+ +HA L + + +L A++ + YA +FD +N LIR
Sbjct: 21 RDLKLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNTLIR 80
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
A ++ F M + +V P++ ++ F+ KS + + L+ +H ++K G
Sbjct: 81 AHAHSTTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCR 140
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
V+ L Y G T A +VF++ L+ +E+
Sbjct: 141 HLHVQNGLIHFYANRGMTLLARRVFEDV------------------------LQLGLEV- 175
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+V SW L+ ++ G+L+ A +F++MP++ VVSWTAM+ G+SQ +AL
Sbjct: 176 ------DVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALE 229
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M +GV ++ T+VS +SACA +G +E G+ VH ++ N FG A+ AL+DMY
Sbjct: 230 LFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYG 289
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG +E A VF K L+TW M+ A +G ++A + F+ M+ SG PD LA
Sbjct: 290 KCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLA 349
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L A + G V + F+SM DY +EP ++H+ V+++L R G++ +A + + +P
Sbjct: 350 LLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYDLLTNIPIP 409
Query: 463 PDFVIWGALFCACRTHKDTKIA 484
+ +WGAL ACR H D ++
Sbjct: 410 CNDAVWGALLGACRIHGDVEMG 431
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/560 (26%), Positives = 257/560 (45%), Gaps = 73/560 (13%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H P ++ H+++ + + R++ NLF + L+S+ + + +D
Sbjct: 37 HPPPTHLL-NHLLTAYGKAGRHARARRVFDATPHPNLFTYN----ALLSTLAHARLLDDM 91
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVA 140
S+F ++ +N +I G + + + +LR SVRP+R+T + + +
Sbjct: 92 DSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAAS 151
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
+L +LGR HC I++ G +AFV L MY ++G A +VFDE KN
Sbjct: 152 ALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNT 211
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMP------- 226
+ W ++ G ++ G +A+ F M
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAID 271
Query: 227 --------------------------------KKNVASWVSLIDGFMRKGDLKKAGELFE 254
NV +L+D + + +K A F
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+M K ++SWTA+I G+ QNG +E+A+ +F +M G+ +DFT+ S +S+CA + +LE
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEE 391
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G + H + + ALV +Y KCG+IE A +F E D ++WTA++ G A
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
GR ++ I F+KM+ +PDG F+ +L+AC +G V+ ++F SM+ D+ I P
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDD 511
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
H+T +++L SR G++ +A FI +MP PD + WG L ACR D +I + A ++ +
Sbjct: 512 HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEI 571
Query: 495 NLSIPQAMSYCQTFMQQKGD 514
+ P + + KG+
Sbjct: 572 DPQNPASYVLLCSMHATKGN 591
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 121/303 (39%), Gaps = 23/303 (7%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
++ T +IS + S ++ Q H ++ L ++ L++ SI+ A +F
Sbjct: 372 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLF 431
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D + + L+ G A+ + I F ML V+P+ +T+ V + + +
Sbjct: 432 DEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVE 491
Query: 147 LGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G H + G+ + D+Y + G+ + A + + P + W L
Sbjct: 492 KGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMP---MHPDAIGWGTL 548
Query: 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV- 261
++ C G + + A E + +N AS+V L KG+ + +L M ++ V
Sbjct: 549 LSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVK 608
Query: 262 ----VSWTAMING---FSQNGEA--------EKALAMFFQMLDAGVRANDFTVVSALSAC 306
SW N FS + ++ EK + +ML+ G + + +V+ ++
Sbjct: 609 KEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADT 668
Query: 307 AKV 309
KV
Sbjct: 669 DKV 671
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 232/483 (48%), Gaps = 43/483 (8%)
Query: 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
A H S Y+LS D L +N +I+ + I +V M R+ + T+
Sbjct: 2 ALFHCSFLYSLSSVD----SGLQRWNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTF 57
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
P + K+ +SLS +G LH +K+G FV L DMY G A KVF+E
Sbjct: 58 PVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGV 117
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR---------- 242
K+ V++WN ++ + G + A++LF MP K++AS+ +I G+ +
Sbjct: 118 KD----VVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSI 173
Query: 243 ---------------------KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
GD+ A LF+ MP+K V++W MI+G+ +A+
Sbjct: 174 FDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAV 233
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F +M A+ TV LSACA +G L G +H Y + + T+L+DMY
Sbjct: 234 DLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMY 293
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG I+ + VF +++ KD+ W A+I GLA+HG A++ KM +G PD F+
Sbjct: 294 AKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFI 353
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC + V+ FD M ++ + P ++H+ +V+LL R G +D A I MP
Sbjct: 354 GLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPF 413
Query: 462 TPDFVIWGALFCACRTHKDTKIAK--IALQSSCSLNLSIPQAMSYCQTFMQ--QKGDGRT 517
P I GAL AC H+D + + I L +S + ++S + M + + Q +
Sbjct: 414 EPGESILGALLGACVIHQDLETGEKVINLITSKAHHVSDGEFMMFVNLYASCGQWKEANR 473
Query: 518 WRE 520
WRE
Sbjct: 474 WRE 476
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 108/248 (43%), Gaps = 8/248 (3%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K+ + ++++T T ++S + ++H H L +S + T LI + +
Sbjct: 239 MKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGT 298
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I +L +F K+++ +N +I GLA + + + + M VRP+ +T+ + +
Sbjct: 299 IQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSA 358
Query: 139 VASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ SL+ G R C+ + G+ + D+ + G AF++ P + E
Sbjct: 359 CSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFE-PGE 417
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELF 253
S+L L+ C L ++ ++ K + ++ ++ + G K+A
Sbjct: 418 SIL--GALLGACVIHQDLETGEKVINLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWR 475
Query: 254 EQMPEKGV 261
E+M E G+
Sbjct: 476 ERMNESGI 483
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 146/534 (27%), Positives = 258/534 (48%), Gaps = 50/534 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
NN T T +IS + + Q+HA + + S + LIS S ID + +F
Sbjct: 350 NNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVF 409
Query: 87 DHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
+ + +I NV+I +++ I F ML+ +R + + V ++ L L
Sbjct: 410 EDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFS---VCSLLSVLDCL 466
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+LG+ +H +KSG+ D V L +Y + G ++K+F P K+ + W +
Sbjct: 467 NLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNA----CWASM 522
Query: 206 INGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------- 234
I+G ++ GYLR+A+ LF G P ++ + V
Sbjct: 523 ISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGI 582
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L++ + + G LK A ++++++PE VS +++I+G+SQ+G + +F
Sbjct: 583 DKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRD 642
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M+ +G + F + S L A A G +VH YI+ + ++G++L+ MY+K G+
Sbjct: 643 MVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGS 702
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ F + DL+ WTA+I A HG+ +A+Q + M G +PD F+ +L+A
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSA 762
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C + G V+ + +SM DY IEP +H+ +V+ L R G++ +A +FIN M PD +
Sbjct: 763 CSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDAL 822
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+WG L AC+ H + ++ K+A + + L S A + + G+ W E
Sbjct: 823 VWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGE---WDE 873
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/479 (24%), Positives = 210/479 (43%), Gaps = 55/479 (11%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N I+ +IS + + + I F + + LI S + + A +
Sbjct: 148 ANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKV 207
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F N++ +N +I G N ++ + F M +P+ TY V + ASL L
Sbjct: 208 FRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKL 267
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G+ + ++K G E D FV + D+Y + G A +VF P + SV+ W V+
Sbjct: 268 RFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIP----NPSVVSWTVM 322
Query: 206 INGCSKIGYLRKAVELFGMM--------------------------PKKNVASWV----- 234
++G +K A+E+F M V +WV
Sbjct: 323 LSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGF 382
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAM 283
+LI + + GD+ + ++FE + + + +V+ MI FSQ+ + KA+ +
Sbjct: 383 YLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAIRL 440
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F +ML G+R ++F+V S LS + L G +VH Y + L +G++L +Y+K
Sbjct: 441 FTRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSK 497
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG++E + +F KD W +MI G +G +AI F +M+ GT PD + A+
Sbjct: 498 CGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAV 557
Query: 404 LTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
LT C + ++R I+ + + +VN+ S+ G + A +++PE
Sbjct: 558 LTVCSSHPSLPRGKEIHGYTLRAG--IDKGMDLGSALVNMYSKCGSLKLARQVYDRLPE 614
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/450 (22%), Positives = 195/450 (43%), Gaps = 56/450 (12%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+T L+S S S+ A +FD ++ N++I G ++ F+ + F M L
Sbjct: 86 LTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLG 145
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
N ++Y V + ++L + C +K G + V L D++ + + A+
Sbjct: 146 FEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAY 205
Query: 185 KVFDETPEKNKSESVLLWNVLING-----------------------------------C 209
KVF ++ N V WN +I G C
Sbjct: 206 KVFRDSLSAN----VYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC 261
Query: 210 SKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + LR + + K ++V +++D + + G + +A E+F ++P VVSWT
Sbjct: 262 ASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTV 321
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M++G++++ +A AL +F +M +GV N+ TV S +SAC + + +VH ++ +
Sbjct: 322 MLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSG 381
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVF---GETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F L ++ AL+ MY+K G+I+ + VF + + ++++ MI + + +AI+
Sbjct: 382 FYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGKAIR 439
Query: 384 YFKKMMYSGTEPDGTVFLAILTA--CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
F +M+ G D ++L+ C G+ + D + S +
Sbjct: 440 LFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSS------LFT 493
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGAL 471
L S+ G ++++ +P D W ++
Sbjct: 494 LYSKCGSLEESYKLFQGIP-FKDNACWASM 522
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
LR+ + F + K++ SW S G + A +LF+ +P+ VVS MI+G+ Q+
Sbjct: 75 LRRYLLPFDVFLTKSLLSWYS------NSGSMADAAKLFDTIPQPDVVSCNIMISGYKQH 128
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---- 330
E++L F +M G AN+ + S +SAC+ AL+A + + C+ +
Sbjct: 129 RLFEESLRFFSKMHFLGFEANEISYGSVISACS---ALQAPL-FSELVCCHTIKMGYFFY 184
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ +AL+D+++K E A VF ++ ++ W +I G + Y F +M
Sbjct: 185 EVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCV 244
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH--------HTVVVNL 442
+PD + ++L AC + +RF ++ V T +V+L
Sbjct: 245 GFQKPDSYTYSSVLAACAS----------LEKLRFGKVVQARVIKCGAEDVFVCTAIVDL 294
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALF 472
++ G + +A+ +++P P V W +
Sbjct: 295 YAKCGHMAEAMEVFSRIP-NPSVVSWTVML 323
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 49/332 (14%)
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ +D F+ L Y G A K+FD P+ + V+ N++I+G + +++
Sbjct: 80 LPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPD----VVSCNIMISGYKQHRLFEESL 135
Query: 220 ELFGMMP----KKNVASWVS-----------------------------------LIDGF 240
F M + N S+ S LID F
Sbjct: 136 RFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVF 195
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ + A ++F V W +I G +N +F +M + + +T
Sbjct: 196 SKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYS 255
Query: 301 SALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S L+ACA + L G V I C + + TA+VD+YAKCG++ A VF
Sbjct: 256 SVLAACASLEKLRFGKVVQARVIKCGAEDV--FVCTAIVDLYAKCGHMAEAMEVFSRIPN 313
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
+++WT M+ G A++ FK+M +SG E + ++++AC V A
Sbjct: 314 PSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQV 373
Query: 420 FD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+ ++++ SV ++++ S+ G +D
Sbjct: 374 HAWVFKSGFYLDSSVA--AALISMYSKSGDID 403
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 183/299 (61%), Gaps = 1/299 (0%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ ++ SK G RKA +F M KN +W ++IDG+MR G + A +LF++M
Sbjct: 56 VMVGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLN 115
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAM+NGF + G E+AL+ F +M +GV+ + +++AL+AC +GAL G+ +
Sbjct: 116 RDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWI 175
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF + +++ +++W ++I G A +G
Sbjct: 176 HRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNA 235
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F +M+ DY I P ++H+
Sbjct: 236 HESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGC 295
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNL 496
+V+L SR G+++ AL + MP P+ V+ G+L AC+ H +T +A+ ++ LN+
Sbjct: 296 IVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNV 354
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 46/227 (20%)
Query: 284 FFQMLDAGVRANDFTVVSALSACAKV--GALEAGVRVHNYISCNDFGLKGA---IGTALV 338
F M AGV N T ++ LS C G+ G +H Y +C GL +GTA++
Sbjct: 6 FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGY-ACK-LGLDRTHVMVGTAIL 63
Query: 339 DMYAKCGNIEAASLVFGETKEK-------------------------------DLLTWTA 367
MY+K G A L+F ++K DL++WTA
Sbjct: 64 GMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTA 123
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL---NFFDSMR 424
M+ G G +E+A+ +F++M SG +PD +A L AC G + L + S
Sbjct: 124 MVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQD 183
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
F + +V+ +++L R G V+ A +KM E V W ++
Sbjct: 184 F----KNNVRVSNSLIDLYCRCGCVEFARQVFDKM-EKRTVVSWNSV 225
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 118/310 (38%), Gaps = 70/310 (22%)
Query: 44 TKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+K+ R A++I + + +T +I ++ A+ +FD ++L + ++
Sbjct: 67 SKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVN 126
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G + + +S F M V+P+ + + +L LS G +H ++ +
Sbjct: 127 GFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKN 186
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ V L D+Y + G A +VFD+
Sbjct: 187 NVRVSNSLIDLYCRCGCVEFARQVFDK--------------------------------- 213
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
M K+ V SW S+I GF G+ A ++L
Sbjct: 214 --MEKRTVVSWNSVIVGFAANGN-------------------------------AHESLF 240
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDM 340
F +M + G + + T AL+AC+ VG +E G+R + D+ + I +VD+
Sbjct: 241 YFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK-RDYRISPRIEHYGCIVDL 299
Query: 341 YAKCGNIEAA 350
Y++ G +E A
Sbjct: 300 YSRAGRLEDA 309
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 243/486 (50%), Gaps = 55/486 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H + + L + + L+S + K +D +F +L +N +I G +N
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M + +RP+ +T + ++ L+ + G+ LH IV++ V D F+
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
L D+Y + R A V+D + K+ V++ + +I+G G ++AV++F
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSS----KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443
Query: 223 GMMPKKNVASWV---------------------------------SLIDGFMRKGDLKKA 249
G+ P + V +L+D + + G L +
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F ++ K V+W +MI+ F+QNGE E+AL +F +M GV+ ++ T+ S LSACA +
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Query: 310 GALEAGVRVHNYISCNDFGLKGAI------GTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A+ G +H + +KG I +AL+DMY KCGN+E A VF EK+ +
Sbjct: 564 PAIYYGKEIHGVV------IKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEV 617
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W ++I +G ++++ + M G + D FLA+++AC ++GQV+ L F M
Sbjct: 618 SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCM 677
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+Y I P ++H +V+L SR G++DKA+ I MP PD IWGAL ACR H++ ++
Sbjct: 678 TEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVEL 737
Query: 484 AKIALQ 489
A+IA Q
Sbjct: 738 AEIASQ 743
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 230/514 (44%), Gaps = 64/514 (12%)
Query: 49 QIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHI----FNVLIRG 103
Q+H + + L A+ + + T+L+ L + A+++F P+ +N LIRG
Sbjct: 60 QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL-PRGAAACALPWNWLIRG 118
Query: 104 LAENSHFQSCISHFVFMLRL-----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
L ++S + +F L++ + P+ T+P+V KS A+L ++LGR +H
Sbjct: 119 LTMAGDYRSAL---LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTL 175
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G++ D FV L MY G A +VFD E++ +LWNV+++G K G + A
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERD----CVLWNVMMDGYVKAGSVSSA 231
Query: 219 VELFGMMP---------------------------------------KKNVASWVSLIDG 239
VELFG M + VA +L+
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSM 291
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + L +LF MP +V+W MI+G QNG ++AL +F M +G+R + T+
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
VS L A + G +H YI N + + +ALVD+Y KC + A V+ +K
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
D++ + MI G ++G ++A++ F+ ++ G P+ ++L AC +KL
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
S E + ++++ ++ G++D + +K+ D V W ++ + +
Sbjct: 472 H-SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKI-SAKDEVTWNSMISSFAQNG 529
Query: 480 DTKIAKIALQSSCS-----LNLSIPQAMSYCQTF 508
+ + A + C N++I +S C +
Sbjct: 530 EPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 184/404 (45%), Gaps = 48/404 (11%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
KS +P +++T ++ + N Q +++H I+ + + + + L+ +++
Sbjct: 341 KSGIRP-DSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAV 399
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
A S++D ++ I + +I G N Q + F ++L +RPN + V +
Sbjct: 400 RMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPAC 459
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
AS++ + LG+ LH +K+ E +V L DMY + G+ + +F + K++
Sbjct: 460 ASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE---- 515
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---------------------------- 231
+ WN +I+ ++ G +A+ LF M + V
Sbjct: 516 VTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGV 575
Query: 232 -----------SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+ +LID + + G+L+ A +FE MPEK VSW ++I + G +++
Sbjct: 576 VIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKES 635
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
+++ M + G +A+ T ++ +SACA G ++ G+R+ ++ ++ + + +V
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMT-EEYQIAPRMEHFACMV 694
Query: 339 DMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D+Y++ G ++ A L+ + D W A++ +H E A
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELA 738
>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like, partial [Cucumis sativus]
Length = 719
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 217/409 (53%), Gaps = 4/409 (0%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + ++I G + + + F+ M R V N T + ++ S
Sbjct: 227 ARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGS 286
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
G +H L++ G + DA++ + MY + A K FD +K+ ++
Sbjct: 287 FDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKD----IVT 342
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN LI G + G L KAV LF MP+K+V SW +LI GF +G + + LF+ MPEK
Sbjct: 343 WNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDA 402
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
++WTA+I+G E E A F +ML + ++ N FT+ LSA A + L G+++H
Sbjct: 403 IAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAI 462
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
++ +I +LV MY+KCGN++ A +F K +++ + +I GLA +G ++A
Sbjct: 463 VTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEA 522
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ F KM P+ FL +L+AC + G V+ +FD MR Y I+P H+ +V+
Sbjct: 523 LEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVD 582
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
LL R G D+A++ ++ MP P +WGA+ A TH +A++A Q+
Sbjct: 583 LLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQN 631
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 116/204 (56%), Gaps = 1/204 (0%)
Query: 186 VFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
+FD + ++ + V++ NVLING SK+G + AV +F M +K+V SW S+I G R G
Sbjct: 163 MFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 222
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ +A +LF++MP++ VV+WT MI+G+ + + +F M GV N T+ L
Sbjct: 223 KIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLE 282
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC G+++H + F + + +++ MY++C +I+AA+ F +KD++T
Sbjct: 283 ACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVT 342
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
W ++I G G E+A+ F+ M
Sbjct: 343 WNSLITGYVQSGNLEKAVFLFENM 366
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD + S+ ++ N I + G +++A +F MP KN SW +L+ + ++
Sbjct: 43 FDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEI 102
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
KA E+F ++P+ V S+ AMI + + ++A +F M + N + + ++
Sbjct: 103 NKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSM----PQRNSVSYATMITGF 158
Query: 307 AKVGALEAGVRVHN----YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
G + ++H +S N L++ Y+K G +E A +F EKD+
Sbjct: 159 VHAGMFDMAEKLHREKPVIVSSN----------VLINGYSKVGRVEDAVRIFDGMAEKDV 208
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
++W++MI GL G+ +A + F KM PD V
Sbjct: 209 VSWSSMISGLCRVGKIVEARKLFDKM------PDRNV 239
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 49/329 (14%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
G + A +F+ P KN + W L+ ++ + KA E+F +P NVAS+ ++I
Sbjct: 69 GCIKEAESIFNRMPNKN----TVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMI 124
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ R+ + +A ELF MP++ VS+ MI GF G F M + R
Sbjct: 125 TAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAG--------MFDMAEKLHREKPV 176
Query: 298 TVVS--ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
V S ++ +KVG +E VR+ + ++ D ++++ + G I A +F
Sbjct: 177 IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDV----VSWSSMISGLCRVGKIVEARKLFD 232
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW----YSG 411
+ +++++TWT MI G + F M G E + T +L AC Y
Sbjct: 233 KMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGE 292
Query: 412 QVK-----LALNF-------------------FDSM--RFDYFIEPSVKHHTVVVNLLSR 445
++ L+L F D+ +FD ++ + ++ +
Sbjct: 293 GIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQ 352
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCA 474
G ++KA+ MP+ D V W L C
Sbjct: 353 SGNLEKAVFLFENMPQK-DVVSWTTLICG 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 159/370 (42%), Gaps = 14/370 (3%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N++ N T T ++ S + + QIH ++ + + +I+ S
Sbjct: 264 NMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCY 323
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
SID A FD K++ +N LI G ++ + + VF+ + + +++ +
Sbjct: 324 SIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKA----VFLFENMPQKDVVSWTTLIC 379
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
AS + GL ++ E DA + V + + AF F + +
Sbjct: 380 GFASEGRIDEFIGLFQMM----PEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKP 435
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELF 253
+ + +++ + + L + +++ ++ K ++ + + SL+ + + G++ A ++F
Sbjct: 436 NAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMF 495
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ VV++ +I G +QNG ++AL +F +M D + N T + LSAC VG +E
Sbjct: 496 YYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVE 555
Query: 314 AGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWG 371
G R + + S D + +VD+ + G EA SLV + W A++
Sbjct: 556 EGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGA 615
Query: 372 LAIHGRYEQA 381
H R + A
Sbjct: 616 SWTHLRLDVA 625
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 241/482 (50%), Gaps = 39/482 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+HA I+ + ++ + LI + + A ++FD ++ +N++I G A
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M V+ +R + K + L+ + LHC +VK+G E+ +R
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L Y + AFK+F + + +V+ W +I G + KAV+LF M ++
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMA---DAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE 402
Query: 229 NV-----------------------------------ASWVSLIDGFMRKGDLKKAGELF 253
V + +L+D +++ G++ ++ +F
Sbjct: 403 GVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
+P K +V+W+AM+ G +Q ++EKA+ +F Q++ GV+ N++T S ++AC+ A +
Sbjct: 463 YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATV 522
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
E G ++H + + +AL+ MY+K GNIE+A VF +E+D+++W +MI G
Sbjct: 523 EHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY 582
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
HG ++A++ F+ M G D F+ +LTAC ++G V+ +F+ M DY I+
Sbjct: 583 GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKK 642
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
++H++ +V+L SR G DKA++ IN MP IW L ACR H++ ++ K+A +
Sbjct: 643 IEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLV 702
Query: 493 SL 494
SL
Sbjct: 703 SL 704
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 209/478 (43%), Gaps = 51/478 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H Q + + T L+ + + IFD KN+ + L+ G A N
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183
Query: 108 SHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ H + +++ V PN T+ V ++A S++ G +H +IVK+G E+ FV
Sbjct: 184 G-LNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
L MY++ A VFD ++ + WN++I G + IG+ + ++F M
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDS----VTWNIMIGGYAAIGFYLEGFQMFHRMR 298
Query: 226 -------------------PKKNVASWVSLIDGFMRKG-----DLKKA-----------G 250
++ + L G ++ G D++ A
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358
Query: 251 ELFE--QMPEKG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
E F+ M + VV+WTAMI GF QN EKA+ +F QM GVR N FT + L+
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA-- 416
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
K +L + ++H I + ++ TAL+D Y K GN+ ++ VF KD++ W+
Sbjct: 417 GKPSSLLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWS 474
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AM+ GLA E+A++ F +++ G +P+ F +++ AC S +
Sbjct: 475 AMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVK 534
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ + ++ + S+ G ++ A + E D V W ++ H D K A
Sbjct: 535 SGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQHGDAKKA 591
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 143/343 (41%), Gaps = 66/343 (19%)
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------- 227
+ R A ++FDETP K+ S +N L+ S+ + R+A+ LF +
Sbjct: 53 RPRYAHQLFDETPLKDISH----YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLS 108
Query: 228 ----------------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
++V+ SL+D +M+ D + +F++M K
Sbjct: 109 CALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIK 168
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VVSWT++++G+++NG ++ + + QM GV N FT + L A A +E GV+VH
Sbjct: 169 NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
I N F + AL+ MY K + A VF +D +TW MI G A G Y
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTAC-----------WYSGQVKLALNFFDSMRFDYF 428
+ Q F +M +G + TVF L C + G VK F +R
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR---- 344
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
T ++ S+ VD+A + + V W A+
Sbjct: 345 --------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 123/262 (46%), Gaps = 14/262 (5%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S + + + L Q+HAQII + T L+ + ++ + +F K++
Sbjct: 412 STVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIV 471
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLSLLSLGRGLHCL 154
++ ++ GLA+ + + F+ +++ V+PN T+ V + +S + + G+ +H
Sbjct: 472 AWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHAT 531
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VKSG V L MY + G A KVF E++ ++ WN +I G + G
Sbjct: 532 AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD----IVSWNSMITGYGQHGD 587
Query: 215 LRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWT 265
+KA+E+F +M + + +++ ++ G +++ + F M +K + ++
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYS 647
Query: 266 AMINGFSQNGEAEKALAMFFQM 287
M++ +S+ G +KA+ + M
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGM 669
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 44/371 (11%)
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
E D F + YV+ A FD P K+ + WN +I G ++ G + KA E
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAAS----WNTMITGYARRGEMEKARE 176
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI------------ 268
LF M +KN SW ++I G++ GDL+KA F+ P +GVV+WTAMI
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236
Query: 269 --------------------NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+G+ +N E L +F ML+ G+R N + SAL C++
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 309 VGALEAGVRVHNYIS----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
+ AL+ G ++H +S CND T+L+ MY KCG + A +F K+KD++
Sbjct: 297 LSALQLGRQIHQIVSKSTLCNDV----TALTSLISMYCKCGELGDAWKLFEVMKKKDVVA 352
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W AMI G A HG ++A+ F++M+ + PD F+A+L AC ++G V + + +F+SM
Sbjct: 353 WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMV 412
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
DY +EP H+T +V+LL R G++++AL I MP P ++G L ACR HK+ ++A
Sbjct: 413 RDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELA 472
Query: 485 KIALQSSCSLN 495
+ A + LN
Sbjct: 473 EFAAEKLLQLN 483
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 142/313 (45%), Gaps = 18/313 (5%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASW 233
V+ G GA +VF KN + WN L+ G SK + +A +LF +P+ + S+
Sbjct: 72 VRSGDIDGALRVFHGMRAKN----TITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSY 127
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
++ ++R + +KA F++MP K SW MI G+++ GE EKA +F+ M++
Sbjct: 128 NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMME---- 183
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASL 352
N+ + + +S + G LE ++G + TA++ Y K +E A
Sbjct: 184 KNEVSWNAMISGYIECGDLEKASHFFKVAP-----VRGVVAWTAMITGYMKAKKVELAEA 238
Query: 353 VFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+F + T K+L+TW AMI G + R E ++ F+ M+ G P+ + + L C
Sbjct: 239 MFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS 298
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++L + V T ++++ + G++ A M + D V W A+
Sbjct: 299 ALQLGRQIHQIVSKSTLCN-DVTALTSLISMYCKCGELGDAWKLFEVM-KKKDVVAWNAM 356
Query: 472 FCACRTHKDTKIA 484
H + A
Sbjct: 357 ISGYAQHGNADKA 369
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
T +I+ K ++ A ++F T KNL +N +I G ENS + + F ML +
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN + LS L LGR +H ++ KS + D L MY + G+ A+K
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWK 340
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLIDGFM--- 241
+F E K + V+ WN +I+G ++ G KA+ LF M+ K W++ + +
Sbjct: 341 LF----EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN 396
Query: 242 RKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
G + FE M V +T M++ + G+ E+AL + +R+
Sbjct: 397 HAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKL--------IRSMP 448
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGL--------KGAIG-TALVDMYAKCGNI 347
F +A+ G L RVH + +F + A G L ++YA
Sbjct: 449 FRPHAAV-----FGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRW 503
Query: 348 EAASLVFGETKEKDLLTWTAMIW 370
E + V KE +++ W
Sbjct: 504 EDVARVRKRMKESNVVKVPGYSW 526
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 12/231 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQIH + L T LIS + A +F+ K++ +N +I G A++
Sbjct: 304 RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQH 363
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFV 166
+ + F M+ +RP+ +T+ V + L+++G ++ VE
Sbjct: 364 GNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH 423
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFG 223
+ D+ + GK A K+ P + + ++ L+ C + A E
Sbjct: 424 YTCMVDLLGRAGKLEEALKLIRSMPFRPHAA---VFGTLLGACRVHKNVELAEFAAEKLL 480
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMIN 269
+ +N A +V L + + K + + ++M E VV SW + N
Sbjct: 481 QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRN 531
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/524 (27%), Positives = 260/524 (49%), Gaps = 73/524 (13%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKN 93
L+ S + + +IHA++I + +S +TT+++ +S+ ++A +F+ +
Sbjct: 2 LLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYS 61
Query: 94 L--------HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
L ++N +I+ + + + + F ML V ++ + V K+ + L +
Sbjct: 62 LPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFV 121
Query: 146 SLGRGLHCLIVKSGVEYD----------------------AFVRV---------HLADMY 174
G +H + K+G+ D F R+ + D Y
Sbjct: 122 KAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGY 181
Query: 175 VQLGKTRGAFKVFDETPEKNKS------------------------------ESVLLWNV 204
V+ G A ++FD P++ K+ + ++ WN
Sbjct: 182 VKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNS 241
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
+I+G K G + A +LF +MP+++V +W ++IDG+ + G + +A LF+Q+P + VV++
Sbjct: 242 MIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAY 301
Query: 265 TAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
+M+ G+ QN +AL +F +M ++ + ++ T+V LSA A++G L + +H YI
Sbjct: 302 NSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIV 361
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
F + G +G AL+DMY+KCG+I+ A LVF + K++ W A+I GLAIHG A
Sbjct: 362 KKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFD 421
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
++ +PD F+ +L AC +SG VK L F+ MR + IEP ++H+ +V++L
Sbjct: 422 MLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 481
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
SR G ++ A I KMP P+ VIW AC HK+ ++ ++
Sbjct: 482 SRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELV 525
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 10/195 (5%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
K SH + T ++S I + +H I+ F ++ LI S SI
Sbjct: 326 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSI 385
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+A+ +F KN+ +N +I GLA + + + RLS++P+ +T+ V +
Sbjct: 386 QHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNAC 445
Query: 140 ASLSLLSLGRGLHCLIV---KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNK 195
+ L+ GL C + K +E + D+ + G A + ++ P E N
Sbjct: 446 SHSGLVK--EGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPND 503
Query: 196 SESVLLWNVLINGCS 210
++W + CS
Sbjct: 504 ----VIWRTFLTACS 514
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/536 (27%), Positives = 250/536 (46%), Gaps = 71/536 (13%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
K R + I NLF+ L+S+ S + +FD ++ +N L+ G
Sbjct: 57 KNARNVFDHIPQPNLFS----WNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGY 112
Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
A N + + ML+ SV NR+T+ + ++ + LGR +H I K G +
Sbjct: 113 AGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSY 172
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KS 196
FV L DMY + G A ++F+E PEKN
Sbjct: 173 LFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE 232
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMP------------------------------ 226
+ + W +I G ++ G ++AV+ F M
Sbjct: 233 KDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI 292
Query: 227 ---------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
+ N+ +L+D + + ++K A +F +M K V+SWTAM+ G+ QNG +
Sbjct: 293 HAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYS 352
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
E+A+ +F M + +DFT+ S +S+CA + +LE G + H + + AL
Sbjct: 353 EEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNAL 412
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+ +Y KCG++E A +F E K +D ++WTA++ G A G+ + I F+ M+ G PDG
Sbjct: 413 ITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
F+ +L+AC +G V+ ++F+ M ++ I P H+T +++LLSR G++++A NFIN
Sbjct: 473 VTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFIN 532
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
+MP +PD + W L +CR + + +I K A +S L P + + KG
Sbjct: 533 QMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKG 588
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 7/239 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
++ T +IS + S ++ Q H Q + L ++ LI+ S+++A +F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLF 429
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
++ + L+ G A+ IS F ML + P+ +T+ V + + L+
Sbjct: 430 HEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVE 489
Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G C++ + + + D+ + G+ A ++ P S + W L
Sbjct: 490 KGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP---FSPDAIGWATL 546
Query: 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++ C G L + A E + +N AS++ L + KG +L + M E GV
Sbjct: 547 LSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGV 605
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 199/390 (51%), Gaps = 34/390 (8%)
Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
LI + + + F ML + P+ +T V + + L L LG LH L+ + G
Sbjct: 149 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKG 208
Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
+ + V L DMY + G A +VFD + +S
Sbjct: 209 MSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS--------------------- 247
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
W ++IDG+ + G + A LF+QM + ++++ +MI G+ +G+ +
Sbjct: 248 -------------WNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLRE 294
Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
AL +F M +R ++FTVVS LSACA +GAL G +H I IGTAL+D
Sbjct: 295 ALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLD 354
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
MY KCG + A++VF ++D+ WTAMI GLA +G + ++YF +M G +P+
Sbjct: 355 MYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVS 414
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
++A+LTAC +S + +FD MR Y I P ++H+ +++LL R G +D+A++ + M
Sbjct: 415 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 474
Query: 460 PETPDFVIWGALFCACRTHKDTKIAKIALQ 489
P P+ VIW ++ ACR HK +A+ A +
Sbjct: 475 PMQPNSVIWASILSACRVHKRIDLAQCAAE 504
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 234/539 (43%), Gaps = 53/539 (9%)
Query: 26 SNNITET-HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
++ I ET H S I ST + Q+H +++ L + + + L++ +S ALS
Sbjct: 728 ASGIRETPHTFSTILGVCSTYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALS 787
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLS 143
+F +N + NV++RGL + I F+ M R + N L+Y + K +
Sbjct: 788 LFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 847
Query: 144 LLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
L GR LH +++K+G + + F+ L D+Y +G + K ++ SE V+ W
Sbjct: 848 WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI----LSEDVISW 903
Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGD----------L 246
N +++ + G++++AV G MP +V S+VSL+ + GD +
Sbjct: 904 NSILSMYADRGHMKEAVYYLKQMLWHGKMP--SVRSFVSLLALSGKTGDWQLGVQIHGIV 961
Query: 247 KKAG--------------------------ELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
K G +F ++P + ++I + A
Sbjct: 962 HKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAA 1021
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGA--LEAGVRVHNYISCNDFGLKGAIGTALV 338
L + M+ GV +D T + + A + + L + +H+ + F + A+ ++L+
Sbjct: 1022 LEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLI 1081
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
YA G + ++ L+F + +++ +TA+I A +G +A++ F +M+ SG +PD
Sbjct: 1082 TAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNV 1141
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
FL + C +G + + MR ++P +H +VNLLSR G V +A+ + +
Sbjct: 1142 TFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQ 1201
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517
P W +L +C+ H + + K A + P F GD T
Sbjct: 1202 SPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRET 1260
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 139/315 (44%), Gaps = 50/315 (15%)
Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV------EYDAFVRVHL 170
F M R +VRP+ T+ F+ K +S S R L C ++ + FV L
Sbjct: 32 FRRMRRAAVRPDGFTFHFLFKCSSS----SRPRALLCTMLHAACLRTMLPSAAPFVANSL 87
Query: 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV 230
MY +LG + FDE +P K+
Sbjct: 88 IHMYTELGLAGDVRRAFDE-----------------------------------IPVKDA 112
Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
SW +I G + G L A L Q P + V+SWT++I +S+ A++A+ F ML
Sbjct: 113 VSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSE 172
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+ +D TV+ LSAC+++ LE G +H + + + AL+DMYAKCG+ A
Sbjct: 173 GIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHA 232
Query: 351 SLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
VF + + +W A+I G HG + A F +M D F +++T +
Sbjct: 233 REVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVR----DIITFNSMITGYIH 288
Query: 410 SGQVKLALNFFDSMR 424
SGQ++ AL F +MR
Sbjct: 289 SGQLREALLLFMNMR 303
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 20/242 (8%)
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
H +D A S+FD +++ FN +I G + + + F+ M R +R + T +
Sbjct: 258 HGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSL 317
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ ASL L GR LH I VE D ++ L DMY++ G+ A VF +++
Sbjct: 318 LSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRD- 376
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE 251
V W +I G + G + +E F M + N S+++++ L +
Sbjct: 377 ---VHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRL 433
Query: 252 LFEQM-------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
F++M P+ + + MI+ ++G ++A+ + M ++ N S LS
Sbjct: 434 YFDEMRILYNIHPQ--IEHYGCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILS 488
Query: 305 AC 306
AC
Sbjct: 489 AC 490
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
M + V S MI GF ++G A++A A++ M+ +G+R T + L C+ AL+
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLH 754
Query: 316 VRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
RV + CN F +G+ALV+ Y + AA +F E ++ ++ GL
Sbjct: 755 GRVLALGLCCNPF-----VGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGN 809
Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
E+ I F M E +G + + C+ +G+
Sbjct: 810 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 847
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 27/268 (10%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
+L A+ N++ +N T ++S S + Q R +HA I L + I T
Sbjct: 291 QLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGT 350
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ ++ A +F +++H + +I GLA N ++ + +F M +P
Sbjct: 351 ALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQP 410
Query: 128 NRLTYPFVSKSVASLSLLSLGR----------GLHCLIVKSGVEYDAFVRVHLADMYVQL 177
N ++Y V + + LL+ GR +H I G D R L D + L
Sbjct: 411 NPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 470
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVE-LFGMMPKKNVASW 233
KT P + S ++W +++ C +I + A E L + P ++ A +
Sbjct: 471 VKT---------MPMQPNS---VIWASILSACRVHKRIDLAQCAAEHLLKIEPDED-AVY 517
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV 261
V L + + + A ++ M E+ V
Sbjct: 518 VQLYNICIDSRKWEDASKIRMLMEERQV 545
>gi|359490432|ref|XP_002267810.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 499
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/470 (31%), Positives = 233/470 (49%), Gaps = 64/470 (13%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIR 102
QL+QIHA I+ +L +I+++ + ++ +++Y +F ++ I+N +IR
Sbjct: 20 QLKQIHAFILTTSLLHDIQISSKFLRRSTEFGAMEYPSLVFSQLGGVFNTDIMIWNGMIR 79
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
G A N CIS F ML+ ++PN TYP+V S + + GR +H I+KSG E
Sbjct: 80 GYAYNGPVDRCISMFDEMLQRGLKPNNFTYPYVLSSCSEMGCFGRGRKVHAQIMKSGFES 139
Query: 163 DAFVRVHLADMYVQL-----------GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
+ V L +MY+++ GK A +F+ K V LWN +I+
Sbjct: 140 NFIVADSLLNMYIKMSDSFELGGVRNGKLNDARMIFNGICVK----PVELWNRMISKYVS 195
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
G + A +LF MP+++V SW S+I G+ R GD+ A LFEQMPEK VV+WT+MI +
Sbjct: 196 NGDVESARQLFDNMPERDVISWNSMISGYARIGDVANARYLFEQMPEKNVVTWTSMIGAY 255
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
S +G+ E A +F +M C N +S N
Sbjct: 256 SGSGDLETAACLFEKM-----------------PC------------RNAVSWN------ 280
Query: 332 AIGTALVDMYAKCGNIEAASLVFG----ETKEKDLLTWTAMIWG---LAIHGRYEQAIQY 384
A++ Y + G E + +F E + D T+ +++ LAIHGR E A++
Sbjct: 281 ----AMISSYTQNGKYEKSLDLFVKMQLEGVDSDGFTFVSVLSACSNLAIHGRTEDAVKL 336
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M G +P+G F + L AC + G V++ F M D+ + P ++H +++LLS
Sbjct: 337 FFLMQKIGLKPNGYTFSSALFACSHGGLVEVGREIFYGMERDFGVCPKLEHFGCLIDLLS 396
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
R G++++A + +MP PD IWGAL CR D K+A+ ++ + L
Sbjct: 397 RNGRLEEAEALVREMPFEPDIAIWGALLGGCRVKSDLKLAEEVVERAGGL 446
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 182/412 (44%), Gaps = 47/412 (11%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP NN T +++S + R++HAQI+ S + I + SL ++ +
Sbjct: 103 KP-NNFTYPYVLSSCSEMGCFGRGRKVHAQIM------KSGFESNFIVADSL---LNMYI 152
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+ D F G N + +F + V+P L +SK V++
Sbjct: 153 KMSDSFE-----------LGGVRNGKLND--ARMIFN-GICVKPVELWNRMISKYVSNGD 198
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ S + + + + +++ + Y ++G A +F++ PEKN V+ W
Sbjct: 199 VESARQLFDNMPERDVISWNSMI-----SGYARIGDVANARYLFEQMPEKN----VVTWT 249
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-- 261
+I S G L A LF MP +N SW ++I + + G +K+ +LF +M +GV
Sbjct: 250 SMIGAYSGSGDLETAACLFEKMPCRNAVSWNAMISSYTQNGKYEKSLDLFVKMQLEGVDS 309
Query: 262 -----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
VS + + + +G E A+ +FF M G++ N +T SAL AC+ G +E G
Sbjct: 310 DGFTFVSVLSACSNLAIHGRTEDAVKLFFLMQKIGLKPNGYTFSSALFACSHGGLVEVGR 369
Query: 317 RVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLA 373
+ Y DFG+ + L+D+ ++ G +E A + E E D+ W A++ G
Sbjct: 370 EIF-YGMERDFGVCPKLEHFGCLIDLLSRNGRLEEAEALVREMPFEPDIAIWGALLGGCR 428
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSMR 424
+ + A + ++ G E + + +L+ + S GQ AL+ + M
Sbjct: 429 VKSDLKLAEEVVERA--GGLEANESGVYVLLSNIYASAGQWPEALSAREKME 478
>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
Length = 704
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 221/440 (50%), Gaps = 41/440 (9%)
Query: 82 ALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSK 137
AL + P ++L + +I G A ++ C S +F+ L+ V PN TY V +
Sbjct: 152 ALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLR 211
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY----------------------- 174
+ + L GR +H +++SG E + + L D+Y
Sbjct: 212 ACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLIT 271
Query: 175 --------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
+ +G+T A VF + E + +N++I + G L +F MMP
Sbjct: 272 SNTLIAGFISMGRTEDAKLVFSQMTEHDSGS----YNLMIKAYADEGRLEDCRRMFEMMP 327
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFF 285
++N+ + S++ ++ G L++ +LFEQ+ E+ V+W +MI+G+ QN ++ +AL +F
Sbjct: 328 RRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFA 387
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M + + T + L ACA +G +E G VH + F G +GTALVDMY+KCG
Sbjct: 388 VMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCG 447
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ A F ++ +WT++I GLA +G + +AI F +M+ + +P+ FL IL
Sbjct: 448 CVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILM 507
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
A +G V + FF SM Y + P+V+H+T V+LL R +V +A FI+KMP D
Sbjct: 508 ASARAGLVNKGMRFFHSME-SYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADG 566
Query: 466 VIWGALFCACRTHKDTKIAK 485
V+WGAL AC D ++ +
Sbjct: 567 VVWGALLTACWYTMDLEMGE 586
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 158/382 (41%), Gaps = 52/382 (13%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+N + A + + M R + + TY + A L +G +HC +V
Sbjct: 35 WNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVV 94
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
KSG + V L D Y A +FD N+ LLW+ ++ + L
Sbjct: 95 KSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNE----LLWSPMVVALVRFNLLS 150
Query: 217 KAVELFGMM-PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
A++L M P +++ +W ++I G+ R N
Sbjct: 151 DALDLLQRMPPSRDLFAWTAIISGYARGA-----------------------------NE 181
Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
K+L +F Q+L + GV N+FT S L AC K+GALE G +H + + F + I
Sbjct: 182 YCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLIT 241
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+ALVD+Y + G ++ A +V+ + L+T +I G GR E A F +M TE
Sbjct: 242 SALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQM----TE 297
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----GQVD 450
D + ++ A G+++ F+ M + + V +N + V G+++
Sbjct: 298 HDSGSYNLMIKAYADEGRLEDCRRMFEMM---------PRRNMVTLNSMMSVLLQNGKLE 348
Query: 451 KALNFINKMPETPDFVIWGALF 472
+ ++ + + V W ++
Sbjct: 349 EGRKLFEQIKDERNTVTWNSMI 370
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 119/282 (42%), Gaps = 52/282 (18%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
+SW A + ++ G AL +M + ++ T SAL ACA+ L G +VH
Sbjct: 33 LSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQ 92
Query: 322 I---SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE---------------------- 356
+ +DF + +G +L+D Y+ C +++AA +F
Sbjct: 93 VVKSGSDDFPV---VGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLL 149
Query: 357 ----------TKEKDLLTWTAMIWGLAIHGRYE---QAIQYFKKMM-YSGTEPDGTVFLA 402
+DL WTA+I G A G E ++++ F +++ G P+ + +
Sbjct: 150 SDALDLLQRMPPSRDLFAWTAIISGYA-RGANEYCCKSLELFVQLLAEDGVMPNEFTYDS 208
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN--KMP 460
+L AC G ++ + + F E + +V+L R G VD A+ N +MP
Sbjct: 209 VLRACVKMGALEFGRSIHGCLIQSGF-ESEQLITSALVDLYCRSGAVDDAVMVYNGLQMP 267
Query: 461 E--TPDFVIWGALFCACRTHKDTKI--AKIALQSSCSLNLSI 498
T + +I G F + +D K+ +++ S S NL I
Sbjct: 268 SLITSNTLIAG--FISMGRTEDAKLVFSQMTEHDSGSYNLMI 307
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 36 SLIHSS---NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+L+H+ + +Q + +HA + ++ + T L+ S + A + F
Sbjct: 403 ALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSP 462
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGL 151
N+ + LI GLA+N H+ I F ML+ +V+PN +T+ + + A L++ G R
Sbjct: 463 NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFF 522
Query: 152 HCL----IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
H + +V + Y V D+ + + R A K + P ++W L+
Sbjct: 523 HSMESYGVVPTVEHYTCAV-----DLLGRARRVREAEKFISKMPIPADG---VVWGALLT 574
Query: 208 GC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
C + K E M K+++++V++ + + + G
Sbjct: 575 ACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLG 614
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 243/486 (50%), Gaps = 55/486 (11%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+H + + L + + L+S + K +D +F +L +N +I G +N
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M + +RP+ +T + ++ L+ + G+ LH IV++ V D F+
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
L D+Y + R A V+D + K+ V++ + +I+G G ++AV++F
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSS----KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443
Query: 223 GMMPKKNVASWV---------------------------------SLIDGFMRKGDLKKA 249
G+ P + V +L+D + + G L +
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+F ++ K V+W +MI+ F+QNGE E+AL +F +M GV+ ++ T+ S LSACA +
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Query: 310 GALEAGVRVHNYISCNDFGLKGAI------GTALVDMYAKCGNIEAASLVFGETKEKDLL 363
A+ G +H + +KG I +AL+DMY KCGN+E A VF EK+ +
Sbjct: 564 PAIYYGKEIHGVV------IKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEV 617
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
+W ++I +G ++++ + M G + D FLA+++AC ++GQV+ L F M
Sbjct: 618 SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCM 677
Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
+Y I P ++H +V+L SR G++DKA+ I MP PD IWGAL ACR H++ ++
Sbjct: 678 TEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVEL 737
Query: 484 AKIALQ 489
A+IA Q
Sbjct: 738 AEIASQ 743
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 230/514 (44%), Gaps = 64/514 (12%)
Query: 49 QIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHI----FNVLIRG 103
Q+H + + L A+ + + T+L+ L + A+++F P+ +N LIRG
Sbjct: 60 QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL-PRGAAACALPWNWLIRG 118
Query: 104 LAENSHFQSCISHFVFMLRL-----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
L ++S + +F L++ + P+ T+P+V KS A+L ++LGR +H
Sbjct: 119 LTMAGDYRSAL---LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTL 175
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G++ D FV L MY G A +VFD E++ +LWNV+++G K G + A
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERD----CVLWNVMMDGYVKAGSVSSA 231
Query: 219 VELFGMMP---------------------------------------KKNVASWVSLIDG 239
VELFG M + VA +L+
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSM 291
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + L +LF MP +V+W MI+G QNG ++AL +F M +G+R + T+
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
VS L A + G +H YI N + + +ALVD+Y KC + A V+ +K
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
D++ + MI G ++G ++A++ F+ ++ G P+ ++L AC +KL
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
S E + ++++ ++ G++D + +K+ D V W ++ + +
Sbjct: 472 H-SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKI-SAKDEVTWNSMISSFAQNG 529
Query: 480 DTKIAKIALQSSCS-----LNLSIPQAMSYCQTF 508
+ + A + C N++I +S C +
Sbjct: 530 EPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 184/404 (45%), Gaps = 48/404 (11%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
KS +P +++T ++ + N Q +++H I+ + + + + L+ +++
Sbjct: 341 KSGIRP-DSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAV 399
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
A S++D ++ I + +I G N Q + F ++L +RPN + V +
Sbjct: 400 RMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPAC 459
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
AS++ + LG+ LH +K+ E +V L DMY + G+ + +F + K++
Sbjct: 460 ASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE---- 515
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---------------------------- 231
+ WN +I+ ++ G +A+ LF M + V
Sbjct: 516 VTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGV 575
Query: 232 -----------SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
+ +LID + + G+L+ A +FE MPEK VSW ++I + G +++
Sbjct: 576 VIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKES 635
Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
+++ M + G +A+ T ++ +SACA G ++ G+R+ ++ ++ + + +V
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMT-EEYQIAPRMEHFACMV 694
Query: 339 DMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D+Y++ G ++ A L+ + D W A++ +H E A
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELA 738
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 224/462 (48%), Gaps = 25/462 (5%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
K + A +FD +++ +N +I G N + + + M+ L + + T V
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A+ LSLG+ +H L +KS E L DMY + G GA +VF++ E+N
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 316
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
V+ W +I G ++ G A++L M K+ +V + S++ R G L ++
Sbjct: 317 --VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374
Query: 253 FEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
+ + E + A+++ +++ G E A ++F M+ + + + T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ L ACA + ALE G +H YI N + + ALVD+Y KCG + A L+F
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
KDL++WT MI G +HG +AI F +M +G EPD F++IL AC +SG ++
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
FF M+ D+ IEP ++H+ +V+LLSR G + KA FI +P PD IWGAL C CR +
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNY 614
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
D ++A+ + L P+ Y + W E
Sbjct: 615 HDIELAEKVAERVFELE---PENSGYYVLLANIYAEAEKWEE 653
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 182/392 (46%), Gaps = 43/392 (10%)
Query: 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGR-----GLHCLIVKSGVEYD 163
F SCI +R+S P R + + + L LG L C+ KS +E
Sbjct: 46 FSSCIP-----IRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETK 100
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAV 219
+ V +QL +F + KS SV L L++ + G L++
Sbjct: 101 TYSSV------LQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGR 154
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKK--------------------AGELFEQMPEK 259
+F M KKNV W ++ + + GD K+ A ELF+++ ++
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
V+SW +MI+G+ NG E+ L ++ QM+ G+ + T++S L CA G L G VH
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ + F + L+DMY+KCG+++ A VF + E+++++WT+MI G GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
AI+ ++M G + D +IL AC SG + + D ++ + +E ++ +
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN-MESNLFVCNAL 393
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+++ ++ G ++ A + + M D + W +
Sbjct: 394 MDMYAKCGSMEAANSVFSTMV-VKDIISWNTM 424
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 169/379 (44%), Gaps = 30/379 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +H+ I + + L+ S +D AL +F+ +N+ + +I G +
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
I M + V+ + + + + A L G+ +H I + +E + FV
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN--------------GCSKIG 213
L DMY + G A VF K+ ++ WN +I C+ +
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKD----IISWNTMIGELKPDSRTMACVLPACASLS 446
Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
L + E+ G + + +S +L+D +++ G L A LF+ +P K +VSWT MI
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+ +G +A+A F +M DAG+ ++ + +S L AC+ G LE G R YI NDF +
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 565
Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + +VD+ ++ GN+ A F ET D W A++ G + E A +
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKA-YEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624
Query: 386 KKMMYSGTEPDGTVFLAIL 404
+++ EP+ + + +L
Sbjct: 625 ERVFE--LEPENSGYYVLL 641
>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like [Cucumis sativus]
Length = 711
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 217/409 (53%), Gaps = 4/409 (0%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +N+ + ++I G + + + F+ M R V N T + ++ S
Sbjct: 219 ARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGS 278
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
G +H L++ G + DA++ + MY + A K FD +K+ ++
Sbjct: 279 FDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKD----IVT 334
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN LI G + G L KAV LF MP+K+V SW +LI GF +G + + LF+ MPEK
Sbjct: 335 WNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDA 394
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
++WTA+I+G E E A F +ML + ++ N FT+ LSA A + L G+++H
Sbjct: 395 IAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAI 454
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
++ +I +LV MY+KCGN++ A +F K +++ + +I GLA +G ++A
Sbjct: 455 VTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEA 514
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ F KM P+ FL +L+AC + G V+ +FD MR Y I+P H+ +V+
Sbjct: 515 LEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVD 574
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
LL R G D+A++ ++ MP P +WGA+ A TH +A++A Q+
Sbjct: 575 LLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQN 623
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 116/204 (56%), Gaps = 1/204 (0%)
Query: 186 VFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
+FD + ++ + V++ NVLING SK+G + AV +F M +K+V SW S+I G R G
Sbjct: 155 MFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 214
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+ +A +LF++MP++ VV+WT MI+G+ + + +F M GV N T+ L
Sbjct: 215 KIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLE 274
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC G+++H + F + + +++ MY++C +I+AA+ F +KD++T
Sbjct: 275 ACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVT 334
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
W ++I G G E+A+ F+ M
Sbjct: 335 WNSLITGYVQSGNLEKAVFLFENM 358
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
FD + S+ ++ N I + G +++A +F MP KN SW +L+ + ++
Sbjct: 35 FDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEI 94
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
KA E+F ++P+ V S+ AMI + + ++A +F M + N + + ++
Sbjct: 95 NKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSM----PQRNSVSYATMITGF 150
Query: 307 AKVGALEAGVRVHN----YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
G + ++H +S N L++ Y+K G +E A +F EKD+
Sbjct: 151 VHAGMFDMAEKLHREKPVIVSSN----------VLINGYSKVGRVEDAVRIFDGMAEKDV 200
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
++W++MI GL G+ +A + F KM PD V
Sbjct: 201 VSWSSMISGLCRVGKIVEARKLFDKM------PDRNV 231
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 49/329 (14%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
G + A +F+ P KN + W L+ ++ + KA E+F +P NVAS+ ++I
Sbjct: 61 GCIKEAESIFNRMPNKN----TVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMI 116
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ R+ + +A ELF MP++ VS+ MI GF G F M + R
Sbjct: 117 TAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAG--------MFDMAEKLHREKPV 168
Query: 298 TVVS--ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
V S ++ +KVG +E VR+ + ++ D ++++ + G I A +F
Sbjct: 169 IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDV----VSWSSMISGLCRVGKIVEARKLFD 224
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW----YSG 411
+ +++++TWT MI G + F M G E + T +L AC Y
Sbjct: 225 KMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGE 284
Query: 412 QVK-----LALNF-------------------FDSM--RFDYFIEPSVKHHTVVVNLLSR 445
++ L+L F D+ +FD ++ + ++ +
Sbjct: 285 GIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQ 344
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCA 474
G ++KA+ MP+ D V W L C
Sbjct: 345 SGNLEKAVFLFENMPQK-DVVSWTTLICG 372
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 159/370 (42%), Gaps = 14/370 (3%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N++ N T T ++ S + + QIH ++ + + +I+ S
Sbjct: 256 NMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCY 315
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
SID A FD K++ +N LI G ++ + + VF+ + + +++ +
Sbjct: 316 SIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKA----VFLFENMPQKDVVSWTTLIC 371
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
AS + GL ++ E DA + V + + AF F + +
Sbjct: 372 GFASEGRIDEFIGLFQMM----PEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKP 427
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELF 253
+ + +++ + + L + +++ ++ K ++ + + SL+ + + G++ A ++F
Sbjct: 428 NAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMF 487
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ VV++ +I G +QNG ++AL +F +M D + N T + LSAC VG +E
Sbjct: 488 YYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVE 547
Query: 314 AGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWG 371
G R + + S D + +VD+ + G EA SLV + W A++
Sbjct: 548 EGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGA 607
Query: 372 LAIHGRYEQA 381
H R + A
Sbjct: 608 SWTHLRLDVA 617
>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 735
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/515 (27%), Positives = 251/515 (48%), Gaps = 15/515 (2%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISL-IHSSNSTKQLRQIHAQIILHNLFASSR 64
+N + + +++ + K ++ + +++S + R A+ + + +
Sbjct: 168 WNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNV 227
Query: 65 IT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
IT T +IS ++ A +F KN+ + +I G A N ++ + F+ M+ L
Sbjct: 228 ITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTL 287
Query: 124 S-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV---EYDAFVRVHLADMYVQLGK 179
S +PN T+ + + A + LG+ LH ++ + +YD + L MY G
Sbjct: 288 SDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGL 347
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
A VF+ + +S +N +ING + G L KA ELF +P +N +W +I G
Sbjct: 348 MDSARSVFEGDMKNCDDQS---FNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISG 404
Query: 240 FMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
++ G + KA LF+ MP+ K ++WT MI G+ QN +A+ +F +M+ G +
Sbjct: 405 YLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGASPINS 464
Query: 298 TVVSALSACAKVGALEAGVRVH--NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T A V L+ G ++H + ++ + +L+ MYAKCG IE A +F
Sbjct: 465 TYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFS 524
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+D ++W +MI GL+ HGR +A+ ++ M+ G PD FL +LTAC ++G V
Sbjct: 525 NMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDK 584
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
F M DY ++P ++H+ ++N+L R G+V A F+ ++P P+ IWGAL C
Sbjct: 585 GCELFSVMLNDYALQPGLEHYVSIINILGRAGRVKDAEEFVLRLPVEPNHTIWGALIGVC 644
Query: 476 RTHK-DTKIAKIALQSSCSLN-LSIPQAMSYCQTF 508
K D IA+ A L+ L+ P ++ C +
Sbjct: 645 GLSKTDADIARRAATRLLELDPLNAPGHVTLCNIY 679
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 191/389 (49%), Gaps = 38/389 (9%)
Query: 51 HAQIILHNLFASSRITTQLISSASL------HKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
A+ ILH+ F S I ++++ S+ H ++ A ++FD +N+ +N ++
Sbjct: 55 EARTILHS-FPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAY 113
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
++ + F M +V +++ + A L + R + + + V
Sbjct: 114 LQSGMTRQAKRFFDDMPERNV----VSWTAMLSGYAGLGWIDDARKVFDEMPERNV---- 165
Query: 165 FVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
V M V L G A KVFD+TP+KN V+ WN +I G + G + A +L
Sbjct: 166 ---VSWNSMVVGLIRNGDLEEARKVFDDTPDKN----VVSWNAMIEGYVENGRMDDAKDL 218
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
F + +NV +W S+I G+ R GD+ +A LF+ MPEK VVSWTAMI GF+ NG +AL
Sbjct: 219 FDQIECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREAL 278
Query: 282 AMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGTAL 337
+F M+ + + N+ T VS + ACA +G G ++H + N + L +G +L
Sbjct: 279 LLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSL 338
Query: 338 VDMYAKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP- 395
V MY+ CG +++A VF G+ K D ++ +MI G Y QA Q K T P
Sbjct: 339 VRMYSVCGLMDSARSVFEGDMKNCDDQSFNSMING------YVQAGQLHKAQELFDTVPI 392
Query: 396 -DGTVFLAILTACWYSGQVKLALNFFDSM 423
+ + +++ +GQV A N FD M
Sbjct: 393 RNKIAWTCMISGYLSAGQVLKASNLFDDM 421
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 34/263 (12%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y+ G A + P N V+ W ++ +K GY+ +A LF +MP +N+ ++
Sbjct: 47 YLTNGFLHEARTILHSFPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTY 106
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+++ +++ G ++A F+ MPE+ VVSWTAM++G++ G + A +F +M + V
Sbjct: 107 NAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVV 166
Query: 294 ANDFTVVSALSACAKVGALEAGVRV------HNYISCNDFGLKGAIG------------- 334
+ + VV + + G LE +V N +S N ++G +
Sbjct: 167 SWNSMVVGLI----RNGDLEEARKVFDDTPDKNVVSWNAM-IEGYVENGRMDDAKDLFDQ 221
Query: 335 ---------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
T+++ Y + G++ A +F EK++++WTAMI G A +G Y +A+ F
Sbjct: 222 IECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLF 281
Query: 386 KKMM-YSGTEPDGTVFLAILTAC 407
MM S +P+ F++++ AC
Sbjct: 282 LDMMTLSDAKPNEETFVSLVYAC 304
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 219/443 (49%), Gaps = 44/443 (9%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD K++ +N +I G + F I F+ M+ +RP+ +T + K+
Sbjct: 199 AQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQ 258
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L +G H ++ G+ D FV L DMY LG T A VFD S S++
Sbjct: 259 SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMC----SRSLIS 314
Query: 202 WNV-----------------------------------LINGCSKIGYLRKAVELFGMMP 226
WN LI GCS+ L L +
Sbjct: 315 WNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCII 374
Query: 227 KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+K + S + +++D + + G +K+A +F +M +K V++WTAM+ G SQNG AE AL
Sbjct: 375 RKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALK 434
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F QM + V AN T+VS + CA +G+L G VH + + + I +AL+DMYA
Sbjct: 435 LFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYA 494
Query: 343 KCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
KCG I +A +F E KD++ +MI G +HG A+ + +M+ +P+ T F+
Sbjct: 495 KCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFV 554
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
++LTAC +SG V+ F SM D+ + P KH+ +V+L SR G++++A + +MP
Sbjct: 555 SLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPF 614
Query: 462 TPDFVIWGALFCACRTHKDTKIA 484
P + AL CRTHK+T +
Sbjct: 615 QPSTDVLEALLSGCRTHKNTNMG 637
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/517 (23%), Positives = 227/517 (43%), Gaps = 47/517 (9%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITT 67
+ A +T + H P N + SL+H SN+ ++ IHAQII + + S +
Sbjct: 24 IYNAAPSSTFVSVHHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAA 83
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
+LI S + +A ++FD + + N +I G N F M +
Sbjct: 84 KLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEI 143
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N T F K+ L +G + V+ G +V + + V+ G A KVF
Sbjct: 144 NSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVF 203
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK-------------- 227
D PEK+ V+ WN +I G + G +++++F G+ P
Sbjct: 204 DGMPEKD----VVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQS 259
Query: 228 -------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+V SL+D + GD A +F+ M + ++SW AMI
Sbjct: 260 GLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMI 319
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G+ QNG ++ A+F +++ +G + T+VS + C++ LE G +H+ I +
Sbjct: 320 SGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELE 379
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ TA+VDMY+KCG I+ A++VFG +K+++TWTAM+ GL+ +G E A++ F +M
Sbjct: 380 SHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQM 439
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVG 447
+ ++++ C + G + +R Y + + + ++++ ++ G
Sbjct: 440 QEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCG 497
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ A N D ++ ++ H + A
Sbjct: 498 KIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYA 534
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/483 (29%), Positives = 238/483 (49%), Gaps = 46/483 (9%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S Q +Q+HAQ I + + + +IS + K + AL +F + + +IR
Sbjct: 20 SKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIR 78
Query: 103 GLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
+ S F ++ FV M R S R P+ +P V KS + L G +H IV+ G++
Sbjct: 79 CFTDQSLFSRALASFVEM-RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMD 137
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV-- 219
D + L +MY +L KVF+ P K+ V+ +N +I G ++ G A+
Sbjct: 138 CDLYTGNALMNMYSKLLGIDSVRKVFELMPRKD----VVSYNTVIAGYAQSGMYEDALRM 193
Query: 220 ---------------------------------ELFGMMPKKNVASWV----SLIDGFMR 242
E+ G + +K + S V SL+D + +
Sbjct: 194 VREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK 253
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
++ + +F + + +SW +++ G+ QNG +AL +F QM+ A VR S
Sbjct: 254 SARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSV 313
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ ACA + L G ++H Y+ FG I +ALVDMY+KCGNI+AA +F D
Sbjct: 314 IPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDE 373
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++WTA+I G A+HG +A+ F++M G +P+ F+A+LTAC + G V A +F+S
Sbjct: 374 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 433
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
M Y + ++H+ V +LL R G++++A +FI+KM P +W L +C HK+ +
Sbjct: 434 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLE 493
Query: 483 IAK 485
+A+
Sbjct: 494 LAE 496
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 20/281 (7%)
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
++FE MP K VVS+ +I G++Q+G E AL M +M + ++ + FT+ S L ++
Sbjct: 161 KVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYV 220
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
+ G +H Y+ IG++LVDMYAK IE + VF +D ++W +++
Sbjct: 221 DVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
G +GRY +A++ F++M+ + P F +++ AC + + L + F
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF-G 339
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH------------ 478
++ + +V++ S+ G + A ++M D V W A+ H
Sbjct: 340 RNIFIASALVDMYSKCGNIQAARKIFDRM-NLHDEVSWTAIIMGHALHGHGHEAVSLFEE 398
Query: 479 ------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513
K ++A +A+ ++CS + +A Y + + G
Sbjct: 399 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYG 439
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 143/332 (43%), Gaps = 17/332 (5%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH +I + + I + L+ + I+ + +F H ++ +N L+ G +N
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQN 285
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M+ VRP + + V + A L+ L LG+ LH +++ G + F+
Sbjct: 286 GRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIA 345
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
L DMY + G + A K+FD ++ + W +I G + G+ +AV LF M
Sbjct: 346 SALVDMYSKCGNIQAARKIFDRMNLHDE----VSWTAIIMGHALHGHGHEAVSLFEEMKR 401
Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAE 278
K N ++V+++ G + +A F M + + + + A+ + + G+ E
Sbjct: 402 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 461
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A +M V + LS+C+ LE +V I D GA +
Sbjct: 462 EAYDFISKMR---VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAY-VLMC 517
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
+MYA G + + + ++K L A W
Sbjct: 518 NMYASNGRWKEMAKLRLRVRKKGLRKKPACSW 549
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 241/482 (50%), Gaps = 39/482 (8%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
Q+HA I+ + ++ + LI + + A ++FD ++ +N++I G A
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ F M V+ +R + K + L+ + LHC +VK+G E+ +R
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L Y + AFK+F + + +V+ W +I G + +KAV+LF M ++
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMA---DAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSRE 402
Query: 229 NV-----------------------------------ASWVSLIDGFMRKGDLKKAGELF 253
V + +L+D +++ G++ ++ +F
Sbjct: 403 GVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
+P K +V+W+AM+ G +Q ++EKA+ +F Q++ GV+ N++T S ++AC+ A +
Sbjct: 463 YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATV 522
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
E G ++H + + +AL+ MY+K GNIE+A VF +E+D+++W +MI G
Sbjct: 523 EHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY 582
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
HG ++A++ F+ M G D F+ +LTAC ++G V+ +F+ M DY I+
Sbjct: 583 GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKK 642
Query: 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
+H++ +V+L SR G DKA++ IN MP IW L ACR H++ ++ K+A +
Sbjct: 643 XEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLV 702
Query: 493 SL 494
SL
Sbjct: 703 SL 704
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 209/478 (43%), Gaps = 51/478 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ+H Q + + T L+ + + IFD KN+ + L+ G A N
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183
Query: 108 SHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ H + +++ V PN T+ V ++A S++ G +H +IVK+G E+ FV
Sbjct: 184 G-LNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
L MY++ A VFD ++ + WN++I G + IG+ + ++F M
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDS----VTWNIMIGGYAAIGFYLEGFQMFHRMR 298
Query: 226 -------------------PKKNVASWVSLIDGFMRKG-----DLKKA-----------G 250
++ + L G ++ G D++ A
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358
Query: 251 ELFE--QMPEKG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
E F+ M + VV+WTAMI GF QN +KA+ +F QM GVR N FT + L+
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA-- 416
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
K +L + ++H I + ++ TAL+D Y K GN+ ++ VF KD++ W+
Sbjct: 417 GKPSSLLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWS 474
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
AM+ GLA E+A++ F +++ G +P+ F +++ AC S +
Sbjct: 475 AMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVK 534
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ + ++ + S+ G ++ A + E D V W ++ H D K A
Sbjct: 535 SGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQHGDAKKA 591
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 143/343 (41%), Gaps = 66/343 (19%)
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------- 227
+ R A ++FDETP K+ S +N L+ S+ + R+A+ LF +
Sbjct: 53 RPRYAHQLFDETPLKDISH----YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLS 108
Query: 228 ----------------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
++V+ SL+D +M+ D + +F++M K
Sbjct: 109 CALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIK 168
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VVSWT++++G+++NG ++ + + QM GV N FT + L A A +E GV+VH
Sbjct: 169 NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
I N F + AL+ MY K + A VF +D +TW MI G A G Y
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTAC-----------WYSGQVKLALNFFDSMRFDYF 428
+ Q F +M +G + TVF L C + G VK F +R
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR---- 344
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
T ++ S+ VD+A + + V W A+
Sbjct: 345 --------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 14/262 (5%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
S + + + L Q+HAQII + T L+ + ++ + +F K++
Sbjct: 412 STVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIV 471
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLSLLSLGRGLHCL 154
++ ++ GLA+ + + F+ +++ V+PN T+ V + +S + + G+ +H
Sbjct: 472 AWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHAT 531
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VKSG V L MY + G A KVF E++ ++ WN +I G + G
Sbjct: 532 AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD----IVSWNSMITGYGQHGD 587
Query: 215 LRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWT 265
+KA+E+F +M + + +++ ++ G +++ + F M +K ++
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYS 647
Query: 266 AMINGFSQNGEAEKALAMFFQM 287
M++ +S+ G +KA+ + M
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGM 669
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/491 (28%), Positives = 239/491 (48%), Gaps = 13/491 (2%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHII-SLIHSSNSTKQLRQIHAQIILHNLFAS 62
H F +L ++ KS P N + ++ ++ K L+ +H+++ + +
Sbjct: 9 HQFPKLQALVSSIR--KSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHEN 66
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
+ +L+ + + A ++FD +N+ +NV+IR N + + F M+
Sbjct: 67 PSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVS 126
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
P+ TYP V K+ + L +G LH + K G++ + FV L +Y + G
Sbjct: 127 GGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPE 186
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLID 238
A V DE +S+ V+ WN ++ G ++ A+ E+ G+ K + + SL+
Sbjct: 187 ARCVLDEM----QSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242
Query: 239 GFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
++ E+F + +K +VSW MI+ + +N K++ ++ QM V +
Sbjct: 243 AVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDA 302
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
T S L AC + AL G R+H Y+ + +L+DMYA+CG +E A VF
Sbjct: 303 ITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDR 362
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
K +D+ +WT++I + G+ A+ F +M SG PD F+AIL+AC +SG +
Sbjct: 363 MKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEG 422
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+F M DY I P ++H +V+LL R G+VD+A N I +MP P+ +WGAL +CR
Sbjct: 423 KFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCR 482
Query: 477 THKDTKIAKIA 487
+ + I +A
Sbjct: 483 VYSNMDIGILA 493
>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
Length = 749
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 221/440 (50%), Gaps = 41/440 (9%)
Query: 82 ALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSK 137
AL + P ++L + +I G A ++ C S +F+ L+ V PN TY V +
Sbjct: 197 ALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLR 256
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY----------------------- 174
+ + L GR +H +++SG E + + L D+Y
Sbjct: 257 ACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLIT 316
Query: 175 --------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
+ +G+T A VF + E + +N++I + G L +F MMP
Sbjct: 317 SNTLIAGFISMGRTEDAKLVFSQMTEHDSGS----YNLMIKAYADEGRLEDCRRMFEMMP 372
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFF 285
++N+ + S++ ++ G L++ +LFEQ+ E+ V+W +MI+G+ QN ++ +AL +F
Sbjct: 373 RRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFA 432
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M + + T + L ACA +G +E G VH + F G +GTALVDMY+KCG
Sbjct: 433 VMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCG 492
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ A F ++ +WT++I GLA +G + +AI F +M+ + +P+ FL IL
Sbjct: 493 CVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILM 552
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
A +G V + FF SM Y + P+V+H+T V+LL R +V +A FI+KMP D
Sbjct: 553 ASARAGLVNKGMRFFHSME-SYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADG 611
Query: 466 VIWGALFCACRTHKDTKIAK 485
V+WGAL AC D ++ +
Sbjct: 612 VVWGALLTACWYTMDLEMGE 631
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 163/397 (41%), Gaps = 52/397 (13%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD + +N + A + + M R + + TY + A
Sbjct: 65 ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L +G +HC +VKSG + V L D Y A +FD N+ LL
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNE----LL 180
Query: 202 WNVLINGCSKIGYLRKAVELFGMM-PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
W+ ++ + L A++L M P +++ +W ++I G+ R
Sbjct: 181 WSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGA---------------- 224
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVH 319
N K+L +F Q+L + GV N+FT S L AC K+GALE G +H
Sbjct: 225 -------------NEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIH 271
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ + F + I +ALVD+Y + G ++ A +V+ + L+T +I G GR E
Sbjct: 272 GCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTE 331
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
A F +M TE D + ++ A G+++ F+ M + + V
Sbjct: 332 DAKLVFSQM----TEHDSGSYNLMIKAYADEGRLEDCRRMFEMM---------PRRNMVT 378
Query: 440 VNLLSRV----GQVDKALNFINKMPETPDFVIWGALF 472
+N + V G++++ ++ + + V W ++
Sbjct: 379 LNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMI 415
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 36 SLIHSS---NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
+L+H+ + +Q + +HA + ++ + T L+ S + A + F
Sbjct: 448 ALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSP 507
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGL 151
N+ + LI GLA+N H+ I F ML+ +V+PN +T+ + + A L++ G R
Sbjct: 508 NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFF 567
Query: 152 HCL----IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
H + +V + Y V D+ + + R A K + P ++W L+
Sbjct: 568 HSMESYGVVPTVEHYTCAV-----DLLGRARRVREAEKFISKMPIPADG---VVWGALLT 619
Query: 208 GC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
C + K E M K+++++V++ + + + G
Sbjct: 620 ACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLG 659
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 186/317 (58%), Gaps = 3/317 (0%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+ + G A + F+ TP ++ V+ W VL+ G G + A E+F MP +N W
Sbjct: 163 FAEKGDMAEARRWFEATPPGMRT--VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVW 220
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
S++ G+ + GD ++A +F+++P + +V+W A+I G++Q G +E+AL F ML V+
Sbjct: 221 SSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVK 280
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
++FT+ S LSACA++G+LE G +VH++I+ + L+DMYAKCG++ A +
Sbjct: 281 PDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYI 340
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F + K+ W MI LA HG+ ++A+ F +M SG +P+ LA+L AC + G V
Sbjct: 341 FDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFV 400
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L F+ + Y + V+H+ +V+LL R G++ +A +N M E P+ VIWG+L
Sbjct: 401 DEGLQIFNKLDA-YGVGAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLG 459
Query: 474 ACRTHKDTKIAKIALQS 490
ACR H+D +++++ +
Sbjct: 460 ACRVHRDAEMSRLVTEE 476
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 151/359 (42%), Gaps = 55/359 (15%)
Query: 133 PFVSKSVA--SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
P + K+ A S + L LG+ LH +KS D V + MY + G A + FDE
Sbjct: 58 PVLLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE- 116
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
MP +NV S+ +L+ G+ GD+ A
Sbjct: 117 ----------------------------------MPDRNVISYNALLAGYAVAGDMDGAL 142
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKV 309
LF M V+W +I GF++ G+ +A +F+ G+R +TV+ CA
Sbjct: 143 ALFGGMRSWTHVTWATLIRGFAEKGDMAEA-RRWFEATPPGMRTVVTWTVLVQGYVCA-- 199
Query: 310 GALEAGVRVHNYISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
G +E V + + N F + +++V Y K G+ E A VF ++L+ W A+
Sbjct: 200 GDMETAREVFDRMPARNAF-----VWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNAL 254
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G A G EQA++ F M+ +PD ++L+AC G ++ D + ++
Sbjct: 255 IAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHI 314
Query: 429 IEPSVKHHTV---VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
K+H V ++++ ++ G + A + M + W + A +H + A
Sbjct: 315 ----RKNHFVMNGLIDMYAKCGDLAHARYIFDSM-RWKNNECWNTMISALASHGQSDEA 368
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 153/382 (40%), Gaps = 63/382 (16%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
+T T ++ + + R++ ++ N F S + T + + A ++FD
Sbjct: 187 VTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEE----ARAVFDR 242
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
+NL +N LI G A+ + + F ML+ V+P+ T + + A L L G
Sbjct: 243 IPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQG 302
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H I + + + FV L DMY + G A +FD KN WN +I+
Sbjct: 303 KKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNE----CWNTMISA 358
Query: 209 CSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS- 263
+ G +A+ LF M K N + ++++ G + + ++F ++ GV +
Sbjct: 359 LASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVGAG 418
Query: 264 ---WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC-----AKVGAL--E 313
+ +++ + G+ ++A + M + N+ S L AC A++ L E
Sbjct: 419 VEHYGCLVDLLGRAGKLKEAYEIVNNMSE---EPNEVIWGSLLGACRVHRDAEMSRLVTE 475
Query: 314 AGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
+R+H++ S ND Y NI AAS
Sbjct: 476 EILRLHSFHASSNDA------------EYIMLANIMAAS--------------------- 502
Query: 373 AIHGRYEQAIQYFKKMMYSGTE 394
R+EQA Q +KM G E
Sbjct: 503 ---ERWEQAEQMRRKMARRGVE 521
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 100/249 (40%), Gaps = 19/249 (7%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + T ++S S +Q +++H I ++ + + LI + + +A
Sbjct: 280 KP-DEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHAR 338
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IFD KN +N +I LA + + F M R +PN +T V +
Sbjct: 339 YIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGG 398
Query: 144 LLSLG----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+ G L V +GVE+ L D+ + GK + A+++ + E+
Sbjct: 399 FVDEGLQIFNKLDAYGVGAGVEHYGC----LVDLLGRAGKLKEAYEIVNNMSEEPNE--- 451
Query: 200 LLWNVLINGC-----SKIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
++W L+ C +++ L + + L N A ++ L + ++A ++
Sbjct: 452 VIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQM 511
Query: 253 FEQMPEKGV 261
+M +GV
Sbjct: 512 RRKMARRGV 520
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 235/480 (48%), Gaps = 46/480 (9%)
Query: 48 RQIHAQIILHNLFASSRI-TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R++H + F + + T++I+ S+ S + +FD KNL +N ++
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 184
Query: 107 NSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
N F+ +S F ++ ++ +P+ T P V K+ A L L LG+ +H + K + D F
Sbjct: 185 NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 244
Query: 166 VRVHLADMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
V L MY + G A K VFD K S WN L+ G ++ RKA++L+
Sbjct: 245 VGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSS----WNALLCGYAQNSDPRKALDLYLQ 300
Query: 225 MPKKNV-ASWVSL------------------IDGFMRKGDLK------------------ 247
M + W ++ I GF + L
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK 360
Query: 248 --KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
A LF+ M + +VSW MI G+SQNG ++A+ +F QML G++ + ++ A
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 420
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
C+++ AL G +H + + ++++DMYAK G I + +F +EKD+ +W
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+I G IHGR ++A++ F+KM+ G +PD F IL AC ++G V+ L +F+ M
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ IEP ++H+T VV++L R G++D AL I +MP PD IW +L +CR H + + +
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGE 600
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 24/231 (10%)
Query: 268 INGFSQNGEAEKALAMFFQ------MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
I ++G ++AL F Q +LD+ R+ V+ L AC + +E G R+H
Sbjct: 74 IKKLCESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVL--LQACGQRKDIEVGRRLHEM 130
Query: 322 IS-----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
+S CNDF + T ++ MY+ CG+ + +VF + + K+L W A++ +
Sbjct: 131 VSASTQFCNDF----VLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNE 186
Query: 377 RYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLAL-NFFDSMRFDYFIEPSV 433
+E A+ F +++ S TE PD ++ AC +G + L L M + V
Sbjct: 187 LFEDAMSIFSELI-SVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDV 243
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ + + G V++A+ + + +T W AL C + D + A
Sbjct: 244 FVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA 294
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 209/410 (50%), Gaps = 48/410 (11%)
Query: 117 FVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV---EYDAFVRVHLAD 172
F+ MLR PN+ YP V ++ ++ + + R +H KSG EYD +R L D
Sbjct: 46 FLRMLRHGRPSPNQFVYPLVLRAACAVDV-RIVRSIHSHACKSGFCGYEYDV-IRTSLLD 103
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
Y S+ + A +LF + +++V S
Sbjct: 104 CY-----------------------------------SRHAMMADARKLFDGLTERSVVS 128
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
W +L+ G+ R G + A LFE+M E+ V +W A+I G SQN +A+ +F +M+ G+
Sbjct: 129 WTALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGL 188
Query: 293 RANDFTVVSALSACAKVGALEAGVRVH--NYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
R N T+ LSAC +G L+ G +H + +C FG ++ L+DMY KCGN+E A
Sbjct: 189 RPNATTISCVLSACGHLGMLKIGKLIHCCAWRTCVGFG--SSVLNGLIDMYGKCGNLEGA 246
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+ +F E ++ L W ++I LA+HG + AI F +M G EPD F+ +L AC +
Sbjct: 247 TWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTHG 306
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V + +F+ M+ ++ IEP ++H+ ++NLL R G+ ALN I+ M D VIWG+
Sbjct: 307 GFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLGRAGRFQDALNVISNMRIESDEVIWGS 366
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L ACR H++ ++A++A++ L+ P +Y +G W E
Sbjct: 367 LLNACRVHRNVELAELAIRKLLELD---PNNANYVVMLANVYSEGGLWEE 413
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T L+S + I A+ +F+ T +++ +N +I G ++N F + F M+ +R
Sbjct: 130 TALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGLR 189
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T V + L +L +G+ +HC ++ V + + V L DMY + G GA +
Sbjct: 190 PNATTISCVLSACGHLGMLKIGKLIHCCAWRTCVGFGSSVLNGLIDMYGKCGNLEGATWI 249
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E ++ S+ WN LIN + G+ + A+ +F M + +V ++V L++
Sbjct: 250 FYEVSDR----SLTAWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTH 305
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
G + + + FE M E + + +IN + G + AL + M + +++
Sbjct: 306 GGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLGRAGRFQDALNVISNMR---IESDEV 362
Query: 298 TVVSALSAC 306
S L+AC
Sbjct: 363 IWGSLLNAC 371
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 280 ALAMFFQMLDAGVRA-NDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGLKG----AI 333
ALA+F +ML G + N F L +ACA + + H +C G G I
Sbjct: 42 ALALFLRMLRHGRPSPNQFVYPLVLRAACAVDVRIVRSIHSH---ACKS-GFCGYEYDVI 97
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
T+L+D Y++ + A +F E+ +++WTA++ G A G+ AI F++M T
Sbjct: 98 RTSLLDCYSRHAMMADARKLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERM----T 153
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSM 423
E D + AI+T C + A+ F M
Sbjct: 154 ERDVAAWNAIITGCSQNRLFAEAVGIFGRM 183
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/514 (30%), Positives = 253/514 (49%), Gaps = 53/514 (10%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILH------NLFASSRITTQLIS 71
N+ S P + + L +S ++Q+HA ++ H N F S ++ S
Sbjct: 16 NVTSPAMPGVPPFSSAVSKLHSRCHSLSTIQQLHAHLLHHDRPIPYNHFLSKLLSISSSS 75
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
S S + L + H TP FNV +R A S ++ + + MLR ++RP+ T
Sbjct: 76 SPSTAAADYVHLLLTAHPTPTAFS-FNVALRFFAA-SRPRTTLQLSLRMLRAALRPDAYT 133
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
PF+ + A + H L+ K G+ L MY LG+ R A +VFD
Sbjct: 134 LPFLLLAAARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGIL 193
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKN---------------- 229
++ V+ WN +I G A +F G +P
Sbjct: 194 RRD----VVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDL 249
Query: 230 -----VASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
+ WV +L+ + + G++ +A +F+ + K V+W A+I G+
Sbjct: 250 ALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGY 309
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+QNG +++A+++F M AG R + T+V LSACA VGALE G + Y F
Sbjct: 310 AQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNV 369
Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-Y 390
+GTALVDMY+KCG++ A VF + K+ +W A+I GLA +GR ++AI+ F+ M
Sbjct: 370 YVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQ 429
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
G PD F+ +L+AC ++G +K +FDS+ ++ I P ++H++ +V+LL+R G ++
Sbjct: 430 EGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDLLARAGHLE 489
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+A +FI K+P PD V+ GAL ACR K+ +++
Sbjct: 490 EAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVS 523
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 17/251 (6%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD K+ +N LI G A+N + IS F M + RP+++T V + A+
Sbjct: 287 ARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAA 346
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ L LG L ++ G + +V L DMY + G A +VF++ P KN++
Sbjct: 347 VGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEAS---- 402
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQM 256
WN LI G + G ++A+ F +M K+ + +++ ++ + G LK F+ +
Sbjct: 403 WNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSL 462
Query: 257 PEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+ + ++ M++ ++ G E+A F + + + + + + L+AC K
Sbjct: 463 TSEFQIIPKIEHYSCMVDLLARAGHLEEAWD-FIEKIPG--KPDAVMLGALLAACRKCKN 519
Query: 312 LEAGVRVHNYI 322
+E VRV N I
Sbjct: 520 VEVSVRVINKI 530
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 119/294 (40%), Gaps = 22/294 (7%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
AI+ +++ + + IT ++S + + + ++ + +++ + T L+
Sbjct: 318 AISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVD 377
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRL 130
S + A+ +F+ KN +N LI GLA N Q I F M + +RP+ +
Sbjct: 378 MYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDI 437
Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKV 186
T+ V + LL GR + E+ ++ + D+ + G A+
Sbjct: 438 TFIGVLSACVHAGLLKDGRRWFDSLTS---EFQIIPKIEHYSCMVDLLARAGHLEEAWDF 494
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG-MMPKKNVASWVSLIDG--FMRK 243
++ P K ++V+L L+ C K + +V + +M + SW ++ +
Sbjct: 495 IEKIP--GKPDAVML-GALLAACRKCKNVEVSVRVINKIMLLEPSNSWNYVVSSKIYASS 551
Query: 244 GDLKKAGELFEQMPEKGV-----VSW---TAMINGFSQNGEAEKALAMFFQMLD 289
L + + M E+GV SW + + F E + + +Q+LD
Sbjct: 552 DRLDDSARMRGLMRERGVSKIPGCSWIEVSGRVLEFYAGDEPQHGVEDMYQLLD 605
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 189/341 (55%), Gaps = 34/341 (9%)
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ +GR +H L VK GVE ++ L +Y G+ A ++FD+ E LL
Sbjct: 286 VEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGE-------LL--- 335
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
++ SW S+I G++R G ++ A LF MPEK VVSW
Sbjct: 336 ------------------------DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSW 371
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+AMI+G++Q+ +ALA+F +M GVR ++ +VSA+SAC + L+ G +H YIS
Sbjct: 372 SAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISR 431
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
N + + T L+DMY KCG +E A VF +EK + TW A+I GLA++G EQ++
Sbjct: 432 NKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNM 491
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
F M +GT P+ F+ +L AC + G V ++F+SM ++ IE ++KH+ +V+LL
Sbjct: 492 FADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLG 551
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
R G + +A I+ MP PD WGAL ACR H+D ++ +
Sbjct: 552 RAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGE 592
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/465 (29%), Positives = 234/465 (50%), Gaps = 45/465 (9%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPK 92
SL+ S + +Q+ +Q IL L ++LI+ +S ++ Y+L IF+H
Sbjct: 8 SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67
Query: 93 NLHIFNVLIRG--LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N +N ++R +NS Q+ + H+ L +P+ TYP + + A+ GR
Sbjct: 68 NTFTWNTIMRAHLYLQNSPHQALL-HYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH V SG + D +VR L ++Y G A +VF+E+P + ++ WN L+ G
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLD----LVSWNTLLAGYV 182
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMI 268
+ G + +A +F MP++N + S+I F RKG ++KA +F + E+ +VSW+AM+
Sbjct: 183 QAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY---ISCN 325
+ + QN E+AL +F +M +GV ++ VVSALSAC++V +E G VH +
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302
Query: 326 DF-GLKGAI-------------------GTALVDM---------YAKCGNIEAASLVFGE 356
D+ LK A+ G L+D+ Y +CG+I+ A ++F
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
EKD+++W+AMI G A H + +A+ F++M G PD T ++ ++AC + + L
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+ + ++ +V T ++++ + G V+ AL M E
Sbjct: 423 -KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEE 466
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 45/242 (18%)
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
SI A +F K++ ++ +I G A++ F ++ F M VRP+
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ L+ L LG+ +H I ++ ++ + + L DMY++ G A +VF EK S
Sbjct: 412 ACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVST 471
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------------------- 228
WN +I G + G + +++ +F M K
Sbjct: 472 ----WNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYF 527
Query: 229 -----------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE 276
N+ + ++D R G LK+A EL + MP V +W A++ ++ +
Sbjct: 528 NSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRD 587
Query: 277 AE 278
E
Sbjct: 588 NE 589
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 109/252 (43%), Gaps = 41/252 (16%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L++ + G + A +FE+ P +VSW ++ G+ Q GE E+A +F M + A
Sbjct: 145 TLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIA 204
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
++ S ++ + G +E R+ N G++G
Sbjct: 205 SN----SMIALFGRKGCVEKARRIFN-------GVRG----------------------- 230
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+E+D+++W+AM+ + E+A+ F +M SG D V ++ L+AC V+
Sbjct: 231 ---RERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVE 287
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL--- 471
+ + + +E V +++L S G++ A + E D + W ++
Sbjct: 288 MG-RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISG 346
Query: 472 FCACRTHKDTKI 483
+ C + +D ++
Sbjct: 347 YLRCGSIQDAEM 358
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 15/261 (5%)
Query: 31 ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
ET ++S I + L + IHA I + L + ++T LI ++ AL +F
Sbjct: 403 ETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFY 462
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
K + +N +I GLA N + ++ F M + PN +T+ V + + L++
Sbjct: 463 AMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVND 522
Query: 148 GRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR + +I + +E + + D+ + G + A ++ D P + V W L+
Sbjct: 523 GRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMP---MAPDVATWGALL 579
Query: 207 NGCSK-----IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
C K +G R +L + P + V L + + KG+ E+ M + GV
Sbjct: 580 GACRKHRDNEMGE-RLGRKLIQLQPDHD-GFHVLLSNIYASKGNWGNVLEIRGIMAQHGV 637
Query: 262 VSWTAMINGFSQNGEAEKALA 282
V T + NG + LA
Sbjct: 638 VK-TPGCSMIEANGTVHEFLA 657
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 235/458 (51%), Gaps = 43/458 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI-SSASLHKSIDYALSIFDHFTPKNLH 95
L H +N L+Q ++ L + + I +SASL S YA S+F ++
Sbjct: 37 LCHCTN-LSHLQQTQGFMLTRGLDQDDILLARFIYTSASLGLS-SYAYSVFISNHRPSIF 94
Query: 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
+N +I L+ +S+ IS F + L + P+ ++PFV K+V LS + +G+ +HC
Sbjct: 95 FYNNVIWALS-SSNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQA 153
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ SG++ V L MY A K+FD K+ LWN
Sbjct: 154 IVSGLDSHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAP----LWN------------ 197
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFSQ 273
+++ G+ + G++ A LFE MPEK VVSWT +I+G++Q
Sbjct: 198 -------------------AMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQ 238
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+A+ +F ML V+ ++ +++ LSACA +GAL+ G +HNYI ++ L+ +
Sbjct: 239 THSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTV 298
Query: 334 G--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
+L+DMYAK G+I A +F K K ++TWT +I GLA+HG ++A+ F M +
Sbjct: 299 PLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKA 358
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
+P+ +A+L+AC + G V+L N F SMR Y IEP ++H+ +++LL R G + +
Sbjct: 359 RVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQE 418
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
A+ + MP + +WG+L A + D +A AL+
Sbjct: 419 AMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALR 456
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 211/448 (47%), Gaps = 37/448 (8%)
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
L A + + T L+S+ +A +FD ++L + R A + + F
Sbjct: 42 LHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQ 101
Query: 119 FMLRLSVRPNRLTYPFVSKSV----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M+ P+ + V + + + S GR +H IV G+E D FV L +Y
Sbjct: 102 DMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVY 161
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ G+ A +VFD P K S + WN +++ + + A LF MP+++V SW
Sbjct: 162 GERGEMTVARRVFDSMPTK----STIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWN 217
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
++I G+ G K+A LF QM + V
Sbjct: 218 TVIAGYCLVGRCKEALGLFRQMVSPSSCT----------------------------VHP 249
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N T+ + LSACA G LE G+ VH YI N G + L+DMYAKCG+I+ A VF
Sbjct: 250 NGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVF 309
Query: 355 GETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
+ ++DL +WT +I GLA+HGR ++ F M SG PD F+ +L AC + G V
Sbjct: 310 EKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLV 369
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473
L+ F SM+ Y I P ++H+ +++LL RVG++ +A I MP P+ VIWGA
Sbjct: 370 DEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLS 429
Query: 474 ACRTHKDTKIAKIALQSSCSLNLSIPQA 501
AC+ H ++ +IA L+ P A
Sbjct: 430 ACKVHSSVELGEIAAAEVTRLDPDDPWA 457
>gi|302779884|ref|XP_002971717.1| hypothetical protein SELMODRAFT_95871 [Selaginella moellendorffii]
gi|300160849|gb|EFJ27466.1| hypothetical protein SELMODRAFT_95871 [Selaginella moellendorffii]
Length = 452
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 223/423 (52%), Gaps = 8/423 (1%)
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
FD+ ++L +N ++ A + F+ I F M+ V P+ ++ + + + + L
Sbjct: 29 FDNVPDRDLVSWNSIMSAYARRALFREVIELFAAMVMEGVDPDAVSCLLLLTAHSHIGLG 88
Query: 146 SLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
S GR +H + +G + + F+ HL +MY + G A +VF+ + N V WN
Sbjct: 89 STGRRIHRHLATAGQDRCNTFLGNHLINMYGKCGSIDDARRVFEGILQPN----VFSWNT 144
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
+I ++ G+ +A +FG MP+KNV SW +L+ + +G L +A E+F++MP+K V+SW
Sbjct: 145 MIAAYTQNGHFDEARRVFGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDKMPQKDVISW 204
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
+++ ++QNG + + +F M G + T+++ L AC V +LE G +H I
Sbjct: 205 NSLVTAYAQNGHILEGIHLFRIMDLYGEAPDSITLIAVLDACTAVRSLERGKTIHAAIRA 264
Query: 325 N---DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D + TALV+MY G +E A F + +D+ WTA+I A +G A
Sbjct: 265 GTRLDLTTHLLVLTALVNMYGNLGCVELAMEAFQGIQRRDVTAWTAVIVAHARNGHGGAA 324
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ F++ G +PD FL+ILTAC ++G + +FF ++ DY + +++H+ V++
Sbjct: 325 LELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFFVALHGDYNVGVTLEHYRCVID 384
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501
+L R+GQ++ A I MP DFV W L AC+T D + +++ SL+ +
Sbjct: 385 MLGRLGQLELAEEVIRGMPFKADFVSWVTLLGACKTQGDAHRGQRVAEAASSLDPGVASP 444
Query: 502 MSY 504
Y
Sbjct: 445 YVY 447
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 136/285 (47%), Gaps = 26/285 (9%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP+ + SW + + + ++G ++++ F+ +P++ +VSW ++++ +++ + + +F
Sbjct: 1 MPQCDTVSWTIVSEAYAQRGHIQESRWFFDNVPDRDLVSWNSIMSAYARRALFREVIELF 60
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS------CNDFGLKGAIGTALV 338
M+ GV + + + L+A + +G G R+H +++ CN F +G L+
Sbjct: 61 AAMVMEGVDPDAVSCLLLLTAHSHIGLGSTGRRIHRHLATAGQDRCNTF-----LGNHLI 115
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
+MY KCG+I+ A VF + ++ +W MI +G +++A + F +M +
Sbjct: 116 NMYGKCGSIDDARRVFEGILQPNVFSWNTMIAAYTQNGHFDEARRVFGEM----PRKNVV 171
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
+ +L A G + A FD M + V +V ++ G + + ++
Sbjct: 172 SWNTLLAAYSERGMLCEAKEMFDKMP-----QKDVISWNSLVTAYAQNGHILEGIHLFRI 226
Query: 459 MP---ETPDFVIWGALFCAC---RTHKDTKIAKIALQSSCSLNLS 497
M E PD + A+ AC R+ + K A+++ L+L+
Sbjct: 227 MDLYGEAPDSITLIAVLDACTAVRSLERGKTIHAAIRAGTRLDLT 271
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+++ S + A +FD K++ +N L+ A+N H I F M P+
Sbjct: 176 LLAAYSERGMLCEAKEMFDKMPQKDVISWNSLVTAYAQNGHILEGIHLFRIMDLYGEAPD 235
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAF 184
+T V + ++ L G+ +H I ++G D V L +MY LG A
Sbjct: 236 SITLIAVLDACTAVRSLERGKTIHAAI-RAGTRLDLTTHLLVLTALVNMYGNLGCVELAM 294
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK---------- 228
+ F ++ V W +I ++ G+ A+ELF GM P
Sbjct: 295 EAFQGIQRRD----VTAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTAC 350
Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-VVS 263
+ + +ID R G L+ A E+ MP K VS
Sbjct: 351 SHAGLLYSGRDFFVALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGMPFKADFVS 410
Query: 264 WTAMINGFSQNGEAEKA--LAMFFQMLDAGV 292
W ++ G+A + +A LD GV
Sbjct: 411 WVTLLGACKTQGDAHRGQRVAEAASSLDPGV 441
>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
Length = 567
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 184/319 (57%), Gaps = 6/319 (1%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ D + G+ A +VFD P++N ++ W +I+GC + G +A ELF MP+KN
Sbjct: 148 MVDWLARRGEVERAREVFDSMPDRN----LVSWAAMISGCVENGMFVEARELFEAMPEKN 203
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
V + ++I G ++GD+ A LF+ + K V+SW AMI G+ NG E+A+ + M
Sbjct: 204 VVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFR 263
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIE 348
GV+ + T+++ L+AC+ + L G H I+ G + AL+ MY+KCGN+
Sbjct: 264 EGVKPDHATLIAVLTACSALALLRQGKSTH-AIAIKAMLESGISFSNALMTMYSKCGNVG 322
Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+ LVF + KD+++W +I A HG+Y++ I F +M +G PD FL++L+AC
Sbjct: 323 ESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACG 382
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIW 468
+ G V +L FD M Y I P +H+ +V++LSR GQ++KA ++I MP + +W
Sbjct: 383 HVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVW 442
Query: 469 GALFCACRTHKDTKIAKIA 487
G+L AC+ H + ++ ++A
Sbjct: 443 GSLLGACQIHGNVQLGELA 461
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 27/304 (8%)
Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
A ++FDE S V+ WN +I GC G L A F P++NVA+W +++ G +
Sbjct: 66 AARRLFDEA---MPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLV 122
Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
R G + A LF++MPE+ VVS+T M++ ++ GE E+A +F M D N + +
Sbjct: 123 RLGRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPD----RNLVSWAA 178
Query: 302 ALSACAKVG------ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+S C + G L + N ++C TA++ + K G++++A +F
Sbjct: 179 MISGCVENGMFVEARELFEAMPEKNVVAC----------TAMITGHCKQGDVDSARRLFD 228
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
+ KD+++W AMI G +G E+A++ M G +PD +A+LTAC ++
Sbjct: 229 GIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQ 288
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA-LNFINKMPETPDFVIWGALFCA 474
+ ++ +E + ++ + S+ G V ++ L FIN T D V W + A
Sbjct: 289 GKSTH-AIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINL--RTKDIVSWNTIIAA 345
Query: 475 CRTH 478
H
Sbjct: 346 YAQH 349
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 148/347 (42%), Gaps = 33/347 (9%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ +D A +FD K++ +N +I G N H + + M R V+
Sbjct: 208 TAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVK 267
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + ++L+LL G+ H + +K+ +E L MY + G + V
Sbjct: 268 PDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELV 327
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGF 240
F +++ ++ WN +I ++ G +K + LF G++P +++S++
Sbjct: 328 FINL----RTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDD--ITFLSVLSAC 381
Query: 241 MRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
G + + +LF+ M K +S + +++ S+ G+ EKA + M ++A
Sbjct: 382 GHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHM---PLKAE 438
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
S L AC G ++ G + +D G L ++YA G + + G
Sbjct: 439 KNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPY-VILSNIYAAAGMWGQVNQIRG 497
Query: 356 ETKEKDL-----LTWTAM-------IWGLAIHGRYEQAIQYFKKMMY 390
+ KE+ + +WT + + G A H + I +K+ +
Sbjct: 498 QMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISF 544
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 21/239 (8%)
Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
I R GD+ A +F+ M + VVSW A++ + G L ++ D + + D
Sbjct: 22 ISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHH--LPAARRLFDEAMPSRD 79
Query: 297 -FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ S ++ C G L+A + A+ LV + G + A +F
Sbjct: 80 VVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLV----RLGRVVDAQRLFD 135
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQV 413
E E++++++T M+ LA G E+A + F M PD + + A+++ C +G
Sbjct: 136 EMPERNVVSYTTMVDWLARRGEVERAREVFDSM------PDRNLVSWAAMISGCVENGMF 189
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
A F++M E +V T ++ + G VD A + + D + W A+
Sbjct: 190 VEARELFEAMP-----EKNVVACTAMITGHCKQGDVDSARRLFDGI-RAKDVISWNAMI 242
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/552 (27%), Positives = 258/552 (46%), Gaps = 47/552 (8%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
L A+A + S+ P T T ++ L + R +HAQ+ + + + T
Sbjct: 40 LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
L + + + A +FD ++ +N L+ G A N + + V M RP
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T V + A+ L+ R H ++SG+E V + D Y + G R A VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------- 228
D P KN + WN +I+G ++ G R+A+ LF M ++
Sbjct: 220 DWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275
Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
NV+ +LI + + + A +F+++ + VSW AMI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
G +QNG +E A+ +F +M V+ + FT+VS + A A + +H Y
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ TAL+DMYAKCG + A ++F +E+ ++TW AMI G HG + A++ F++M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ T FL++L+AC ++G V +F SM+ DY +EP ++H+ +V+LL R G+
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508
+D+A FI KMP P ++GA+ AC+ HK+ ++A+ + Q L PQ Y
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG---PQEGVYHVLL 572
Query: 509 MQQKGDGRTWRE 520
+ W++
Sbjct: 573 ANIYANASMWKD 584
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 201/421 (47%), Gaps = 66/421 (15%)
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
S + ++ FV M P T+ + K A+ L+ GR +H + G++ +A
Sbjct: 38 SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
LA+MY + + A +VFD P +++ + WN L+ G ++ G R A+E+ M +
Sbjct: 98 TALANMYAKCRRPADARRVFDRMPVRDR----VAWNALVAGYARNGLARMAMEMVVRMQE 153
Query: 228 K------------------------------------------NVASWVSLIDGFMRKGD 245
+ NVA+ +++D + + GD
Sbjct: 154 EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVAT--AILDAYCKCGD 211
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
++ A +F+ MP K VSW AMI+G++QNG++ +ALA+F +M++ GV D +V++AL A
Sbjct: 212 IRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQA 271
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
C ++G L+ G+RVH + ++ AL+ MY+KC ++ AS VF E + ++W
Sbjct: 272 CGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSW 331
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI G A +G E A++ F +M +PD ++++ A LA + D ++
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA--------LA-DISDPLQA 382
Query: 426 DYFIEPSVKHH--------TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
+ S++ H T ++++ ++ G+V+ A N E + W A+ +
Sbjct: 383 RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-HVITWNAMIHGYGS 441
Query: 478 H 478
H
Sbjct: 442 H 442
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 172/283 (60%), Gaps = 2/283 (0%)
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
LI +++G + A ++F MP + V +W L+D +R GDL A E+F +MP++ VVSW
Sbjct: 101 LIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNVVSW 160
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
+I GF++NG A++A+ +F +M A G+ ++ T+V +SA +G L G H Y+
Sbjct: 161 NTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYVL 220
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
+F L GA+G AL+ MY +CG++ AA F K++ WT++I G A HG+ E+A++
Sbjct: 221 RREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPEKALR 280
Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
F +M G EP+G F+A+L AC + G V +FD MR I P ++H+ +V+LL
Sbjct: 281 LFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMR-SMGIRPMIQHYGCLVDLL 339
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
R G + +A N + +PE P FVIW +L AC +H D ++A++
Sbjct: 340 GRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSHGDVEMAEL 382
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 18/255 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ H ++ + LIS + S+ A S F T KN+ + LI G A +
Sbjct: 213 KSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAH 272
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M R+ + PN +T+ V + L+S G L+ G+
Sbjct: 273 GQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHY 332
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFG 223
L D+ + G + AF + PE ++W+ L+ C G + A +L
Sbjct: 333 GCLVDLLGRAGFLKEAFNLASNLPE---DPGFVIWSSLLAACHSHGDVEMAELTASKLAD 389
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMINGFSQNGEAE 278
P +S+V L + + R + +M E GV +SW + G A+
Sbjct: 390 AKPSHG-SSYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGLSWIEVDGGVHSFATAD 448
Query: 279 KALAM----FFQMLD 289
K L M +QML+
Sbjct: 449 K-LHMESEDIYQMLE 462
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 223/447 (49%), Gaps = 49/447 (10%)
Query: 56 LHNLFASSRITTQ------LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+H L + SR +T LI S S+ A +F +NL +N LI +N
Sbjct: 169 VHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGP 228
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ FV M+ + P+ +T V + ASL L G +H +VK+ D V +
Sbjct: 229 ASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN 288
Query: 170 -LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
L DMY + CSK+ R+ +F M +
Sbjct: 289 ALVDMYAK--------------------------------CSKVNEARR---VFDRMSIR 313
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
NV S S++ G+ R +K A +F +M ++ VVSW A+I G++QNGE E+AL +F +
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------IGTALVDMYA 342
+ +T + LSACA + L G + H ++ F + +G +L+DMY
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYM 433
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+IE S VF + KE+D ++W A+I G A +G +A+Q F+KM+ G +PD +
Sbjct: 434 KCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIG 493
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC ++G V+ ++F SM ++ + P H+T +V+LL R G +++A N I MP
Sbjct: 494 VLCACSHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVN 552
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQ 489
PD V+WG+L AC+ H + ++ K A +
Sbjct: 553 PDAVVWGSLLAACKVHGNIEMGKHAAE 579
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 140/264 (53%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S + + N LI+ K L A +LF MP++N +W SLI + G L +A LF
Sbjct: 47 SMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGS 106
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE SW +M++GF+Q+ E++L F +M N+++ SALSACA + L G
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMG 166
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+VH +S + + +G+AL+DMY+KCG++ A VF E++L+TW ++I +
Sbjct: 167 TQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQN 226
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G +A++ F +MM SG EPD ++++AC +K L + +
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 436 HTVVVNLLSRVGQVDKALNFINKM 459
+V++ ++ +V++A ++M
Sbjct: 287 GNALVDMYAKCSKVNEARRVFDRM 310
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/478 (22%), Positives = 198/478 (41%), Gaps = 93/478 (19%)
Query: 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
S S + R +HA+I++ I +LI +D A +FD +N +N L
Sbjct: 28 SRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSL 87
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
I L ++ F M P++ ++ + A + +
Sbjct: 88 ISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSGFAQHDRF-----------EESL 132
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
EY FV++H D + A ++ C+ + L +
Sbjct: 133 EY--FVKMHREDFLLNEYSFGSA----------------------LSACAGLMDLNMGTQ 168
Query: 221 LFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ ++ K ++ V +LID + + G + A E+F M E+ +V+W ++I + QNG
Sbjct: 169 VHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGP 228
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGT 335
A +AL +F +M+D+G+ ++ T+ S +SACA + AL+ G+++H + N F +G
Sbjct: 229 ASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN 288
Query: 336 ALVDMYAKC-------------------------------GNIEAASLVFGETKEKDLLT 364
ALVDMYAKC +++AA +F + ++++++
Sbjct: 289 ALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS 348
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-----------WYSGQV 413
W A+I G +G E+A++ F+ + P F +L+AC ++ +
Sbjct: 349 WNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVL 408
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
K F D F+ S ++++ + G ++ KM E D V W A+
Sbjct: 409 KQGFEFQSGAESDIFVGNS------LIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAI 459
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC------------------ 344
L +C + + VH I F ++ I L+D+Y KC
Sbjct: 22 LDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNT 81
Query: 345 -------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
G ++ A+ +FG E D +W +M+ G A H R+E++++YF KM
Sbjct: 82 FTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHRE 141
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALN-----FFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+ F + L+AC +G + L + R+ V + ++++ S+
Sbjct: 142 DFLLNEYSFGSALSAC--AGLMDLNMGTQVHALVSKSRY----STDVYMGSALIDMYSKC 195
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
G V A + M E + V W +L
Sbjct: 196 GSVACAEEVFSGMIER-NLVTWNSL 219
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 222/444 (50%), Gaps = 46/444 (10%)
Query: 54 IILHNLFASSRIT------TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +H L A SR + + L+ S + + A FD +N+ +N LI +N
Sbjct: 171 VQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQN 230
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ FV M+ + P+ +T V+ + ASLS + G +H ++K +D +
Sbjct: 231 GPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK----HDKY-- 284
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
++L N L++ +K + +A +F MP
Sbjct: 285 ----------------------------RNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V S S++ G+ + +K A +F M E+ VVSW A+I G++QNGE E+A+ +F +
Sbjct: 317 RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL 376
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------IGTALVDMY 341
+ +T + L+ACA + L+ G + H +I + F K +G +L+DMY
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMY 436
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
KCG +E LVF E+D ++W AMI G A +G +A++ F++M+ SG PD +
Sbjct: 437 MKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMI 496
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+AC ++G V+ +F SM ++ + P H+T +V+LL R G +D+A N I MP
Sbjct: 497 GVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPM 556
Query: 462 TPDFVIWGALFCACRTHKDTKIAK 485
PD V+WG+L AC+ H + + K
Sbjct: 557 EPDAVVWGSLLAACKVHGNITLGK 580
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 143/266 (53%), Gaps = 2/266 (0%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S + + N L++ K G+L A ++F M ++N SW +++ + G L +A LF+
Sbjct: 51 SSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKC 110
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ SW AM++GF+Q E+AL M N+++ SALSACA + L G
Sbjct: 111 MPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIG 170
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
V++H I+ + + L +G+ALVDMY+KC + +A F + +++++W ++I +
Sbjct: 171 VQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQN 230
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVK 434
G +A++ F +MM G EPD ++ +AC ++ L M+ D + V
Sbjct: 231 GPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVL 290
Query: 435 HHTVVVNLLSRVGQVDKALNFINKMP 460
+ +V++ ++ +V++A ++MP
Sbjct: 291 GNA-LVDMYAKCRRVNEARLVFDRMP 315
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 87/330 (26%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHN--------------LFASSRIT------ 66
+ IT + S S ++ ++ QIHA+++ H+ ++A R
Sbjct: 251 DEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLV 310
Query: 67 ------------TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
T ++S + S+ A +F + +N+ +N LI G +N + +
Sbjct: 311 FDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAV 370
Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK------SGVEYDAFVRV 168
F+ + R S+ P T+ + + A+L+ L LGR H I+K SG + D FV
Sbjct: 371 RLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGN 430
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
L DMY++ G VF+ E++ + WN +I G ++ GY +A+E+F
Sbjct: 431 SLIDMYMKCGLVEDGRLVFERMLERDN----VSWNAMIVGYAQNGYGTEALEIFREMLVS 486
Query: 223 ------------------------------------GMMPKKNVASWVSLIDGFMRKGDL 246
G++P K+ + ++D R G L
Sbjct: 487 GERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKD--HYTCMVDLLGRAGCL 544
Query: 247 KKAGELFEQMP-EKGVVSWTAMINGFSQNG 275
+A L + MP E V W +++ +G
Sbjct: 545 DEANNLIQTMPMEPDAVVWGSLLAACKVHG 574
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L C K ++ VH I F + I LVD+Y KCG +E A VF ++++
Sbjct: 26 LDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNT 85
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+W A++ L G ++A+ FK M E D + A+++ + + AL F
Sbjct: 86 FSWNAVLGALTKFGALDEALNLFKCM----PERDQCSWNAMVSGFAQRDRFEEALRFVVD 141
Query: 423 MRFDYFI 429
M + F+
Sbjct: 142 MHSEDFV 148
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 223/419 (53%), Gaps = 35/419 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
+D A S+F+ +++ +N +I G +N + F ML S+ P+ T V
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 199
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A+L + +G+ +H I+++ + Y++ V L Y + G A ++ D++ E +
Sbjct: 200 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL-- 257
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
NV S+ +L++G+++ GD++ A E+F M
Sbjct: 258 -------------------------------NVISFTALLEGYVKIGDMESAREMFGVMN 286
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI G+ QNG ++A+ +F M+ G N +T+ + LS CA + L+ G +
Sbjct: 287 NRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 346
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
+H + ++ A++ MYA+ G+ A +F + K+ +TWT+MI LA HG
Sbjct: 347 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 406
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ E+A+ F++M+ +G EPD ++ +L+AC ++G V ++D ++ ++ I P + H+
Sbjct: 407 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 466
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL+R G +A FI +MP PD + WG+L ACR HK+ ++A++A + S++
Sbjct: 467 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 525
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 179/435 (41%), Gaps = 78/435 (17%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F ++ + V++ GL F I + M P + T V S A
Sbjct: 11 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
++GR +H +VK G+ V + +MY + G + A VF+ P + SV
Sbjct: 71 TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR----SVSS 126
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +++ + +G + A LF MP +++ SW ++I G
Sbjct: 127 WNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAG---------------------- 164
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++QNG KAL +F +ML ++ + ++FT+ S LSACA +G + G +VH
Sbjct: 165 ---------YNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 215
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLV--------------------------- 353
YI + + AL+ YAK G++E A +
Sbjct: 216 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 275
Query: 354 ------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
FG +D++ WTAMI G +GR ++AI F+ M+ G EP+ A+L+ C
Sbjct: 276 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 335
Query: 408 WYSGQVKLA-LNFFDSMR---FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
LA L++ + +E S ++ + +R G A +++
Sbjct: 336 -----ASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRK 390
Query: 464 DFVIWGALFCACRTH 478
+ + W ++ A H
Sbjct: 391 ETITWTSMIVALAQH 405
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 41/264 (15%)
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
F + G L A +F +MPE+ VSWT M+ G ++ G +A+ M G FT+
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE--- 356
+ LS+CA A G +VH+++ G + ++++MY KCG+ E A+ VF
Sbjct: 62 TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121
Query: 357 ----------------------------TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ +++W AMI G +G +A++ F +M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 389 MY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL---- 443
++ S PD ++L+AC G V++ Y + + +++ V N L
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQV-----HAYILRTEMAYNSQVTNALISTY 236
Query: 444 SRVGQVDKALNFINKMPETPDFVI 467
++ G V+ A +++ ET VI
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVI 260
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
M+AK G + A VF E E+D ++WT M+ GL GR+ +AI+ M G P
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
+L++C + Q S + V V+N+ + G + A +M
Sbjct: 61 LTNVLSSCAVT-QAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119
Query: 460 P 460
P
Sbjct: 120 P 120
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 252/479 (52%), Gaps = 41/479 (8%)
Query: 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
+H+ + +++ ++S SL + YA S+F H ++ +N ++R ++ + +
Sbjct: 7 IHHKPSLNKLIAHVLSMGSL--GVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQ 64
Query: 116 HFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
+ ML S P+R T+P + K A L +G+ LH +VK + D ++ L +MY
Sbjct: 65 SYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124
Query: 175 VQLGKTRGAFKVFDETPEKNK----------------SESVLLWN--------------- 203
G + A +F+ +NK +E++LL+
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK 259
L++ C+++ L ++L + + ++ +L++ + + GDLK A ++F+Q+ +K
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK 244
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRV 318
V +W+A+I G+ +N + +AL +F ++ + +R N+ T+++ +SACA++G LE G V
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV 304
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H+YI+ G ++ +L+DM++KCG+I+AA +F KDL++W +M+ GLA+HG
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLG 364
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A+ F M + +PD F+ +LTAC ++G V+ F + Y + +H+
Sbjct: 365 REALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+V+LL R G + +A FI MP PD IWG++ ACR + + ++ + A + C L L
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEA--ARCLLELE 481
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 110/234 (47%), Gaps = 12/234 (5%)
Query: 31 ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
E + +L+ + K L ++H+ I ++ + + + L++ + + A +FD
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLS 146
+ K+++ ++ LI G +N+ + F + S +RPN +T V + A L L
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H I ++ + + L DM+ + G A ++FD K+ ++ WN ++
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD----LISWNSMV 355
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
NG + G R+A+ F +M ++ +++ ++ G +++ +LF ++
Sbjct: 356 NGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 28/270 (10%)
Query: 7 NRLTTAIAPTTNIK--SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
NR T A+ + S+ +P N +T +IS + R +H I S
Sbjct: 260 NRSTEALQLFREVAGGSNMRP-NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVS 318
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ LI S ID A IFD + K+L +N ++ GLA + + ++ F M
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTD 378
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGR-------GLHCLIVKS---GVEYDAFVRVHLADMY 174
++P+ +T+ V + + L+ G+ L+ + +KS G D R L
Sbjct: 379 LQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGL---- 434
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVA 231
L + R +V P+ +W ++ C L +A + N
Sbjct: 435 --LAEAREFIRVMPLQPDGA------IWGSMLGACRVYNNLELGEEAARCLLELEPTNDG 486
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++ L + + R+ + ++ E M EKG+
Sbjct: 487 VYILLSNIYARRKMWNEVKKVRELMNEKGI 516
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/460 (29%), Positives = 225/460 (48%), Gaps = 51/460 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D AL +FD +N+ +N ++ G +N + I F+ M P R + +
Sbjct: 1 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRM------PERDSASLSALV 54
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM----YVQLGKTRGAFKVFDETP--- 191
+ L L+ + D VH ++ Y Q G+ A ++FD+ P
Sbjct: 55 AGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYD 114
Query: 192 ---------EKN---------------------------KSESVLLWNVLINGCSKIGYL 215
E+N K + WN +I+G ++ +
Sbjct: 115 GGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDM 174
Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
+A LF MP + +W S+I GF +KG+L+ A LF +P+K +VSW +MI G+ NG
Sbjct: 175 EEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNG 234
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
+ + A ++ QML G + + T+ S LS C+ AL G+++H I+ I
Sbjct: 235 DYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP-DIPINN 293
Query: 336 ALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+L+ MY++CG I A +F E K +K++++W AMI G A HG A++ F+ M
Sbjct: 294 SLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVR 353
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P F+++L AC ++G VK F SM ++ IEP ++H +V+++ R GQ+++A++
Sbjct: 354 PTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMD 413
Query: 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
IN MP PD +WGAL ACR H + ++A++A ++ L
Sbjct: 414 LINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKL 453
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 26/264 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+IS + +++ A ++F KNL +N +I G N ++ + ML +P+
Sbjct: 195 MISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPD 254
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
R T V + + L LG +H I K+ + D + L MY + G A +FD
Sbjct: 255 RHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP-DIPINNSLITMYSRCGAIVEARTIFD 313
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
E + + V+ WN +I G + G+ A+ELF +M + V +++S+++ G
Sbjct: 314 EVKLQKE---VISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAG 370
Query: 245 DLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+K+ F+ M E + + ++++ ++G+ E+A+ + M F
Sbjct: 371 FVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM--------PFEP 422
Query: 300 VSALSACAKVGALEAGVRVHNYIS 323
A+ GAL RVHN +
Sbjct: 423 DKAV-----WGALLGACRVHNNVE 441
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 249/504 (49%), Gaps = 41/504 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-------ASLHK---SID 80
E +SL+ S + L QIHA ++ + L + + T+ I++ A L+ I
Sbjct: 152 ERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIV 211
Query: 81 YALSIFDHFTPKN-LHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKS 138
+A +FDH ++ + N +I+ + + + + R S P+ T+ ++KS
Sbjct: 212 HARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKS 271
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A + G+ +H +V G D + L DMY + GK A K+FDE ++++
Sbjct: 272 CALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSW 331
Query: 199 VLL---------------------------WNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
L +N +I+ K+G + A +LF MP+++V
Sbjct: 332 TALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVV 391
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA- 290
SW +I G+ G+L A LF+ MPEK + SW AMI+G+ QN + +AL +F +M
Sbjct: 392 SWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTT 451
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
+ ++ T+VS L A A +GAL+ G VH ++ +GTAL+DMYAKCG I +
Sbjct: 452 SLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 511
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF EK+ +W A+I AI+GR ++A+ F +M + G P+ + +L+AC +S
Sbjct: 512 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHS 571
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ +F +M ++ + P ++H+ +V+LL R G + +A + MP + +I +
Sbjct: 572 GLVEEGKRWFKAME-EFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSS 630
Query: 471 LFCACRTHKDTKIAKIALQSSCSL 494
AC KD A+ L+ + +
Sbjct: 631 FLFACGYSKDVARAERVLKEAIKM 654
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 214/449 (47%), Gaps = 43/449 (9%)
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
L + + T L+S+ + S D+A +FD + L + R + I+ F
Sbjct: 41 LHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFG 100
Query: 119 FMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M+ V P+ + + + + G+ +H L+V SG+ D FV L +Y
Sbjct: 101 DMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVY 160
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ G+ + +VFD+ MP ++ +W
Sbjct: 161 GESGELPVSRRVFDD-----------------------------------MPSRSTITWN 185
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD---AG 291
+++ + R G + A E+F MP + VVSW ++ G+ G +AL +F QM+
Sbjct: 186 AMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCA 245
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V N T+ + L ACA G LE G+ VH YI N G + L+DMY KCG+I+ A
Sbjct: 246 VHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNAL 305
Query: 352 LVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + ++KDL +WT +I GLA+HGR A++ F M +G PD + +L AC +
Sbjct: 306 QVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHG 365
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V L +F SM + I P ++H+ +++LL RVG++ +A + I MP P+ VIWGA
Sbjct: 366 GLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGA 425
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
AC+ H + ++ KIA + L+ P
Sbjct: 426 FLSACKVHGNMELGKIAAEELTRLDPDDP 454
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/552 (27%), Positives = 258/552 (46%), Gaps = 47/552 (8%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
L A+A + S+ P T T ++ L + R +HAQ+ + + + T
Sbjct: 40 LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
L + + + A +FD ++ +N L+ G A N + + V M RP
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T V + A+ L+ R H ++SG+E V + D Y + G R A VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------- 228
D P KN + WN +I+G ++ G R+A+ LF M ++
Sbjct: 220 DWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275
Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
NV+ +LI + + + A +F+++ + VSW AMI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
G +QNG +E A+ +F +M V+ + FT+VS + A A + +H Y
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ TAL+DMYAKCG + A ++F +E+ ++TW AMI G HG + A++ F++M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ T FL++L+AC ++G V +F SM+ DY +EP ++H+ +V+LL R G+
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508
+D+A FI KMP P ++GA+ AC+ HK+ ++A+ + Q L PQ Y
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG---PQEGVYHVLL 572
Query: 509 MQQKGDGRTWRE 520
+ W++
Sbjct: 573 ANIYANASMWKD 584
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 202/428 (47%), Gaps = 66/428 (15%)
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
+R A S + ++ FV M P T+ + K A+ L+ GR +H + G+
Sbjct: 31 LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ +A LA+MY + + A +VFD P +++ + WN L+ G ++ G R A+E
Sbjct: 91 DSEALAATALANMYAKCRRPADARRVFDRMPVRDR----VAWNALVAGYARNGLARMAME 146
Query: 221 LFGMMPKK------------------------------------------NVASWVSLID 238
+ M ++ NVA+ +++D
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVAT--AILD 204
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + GD++ A +F+ MP K VSW AMI+G++QNG++ +ALA+F +M++ GV D +
Sbjct: 205 AYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVS 264
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
V++AL AC ++G L+ G+RVH + ++ AL+ MY+KC ++ AS VF E
Sbjct: 265 VLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD 324
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
+ ++W AMI G A +G E A++ F +M +PD ++++ A +
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL---------AD 375
Query: 419 FFDSMRFDYFIEPSVKHH--------TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
D ++ + S++ H T ++++ ++ G+V+ A N E + W A
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-HVITWNA 434
Query: 471 LFCACRTH 478
+ +H
Sbjct: 435 MIHGYGSH 442
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 233/490 (47%), Gaps = 68/490 (13%)
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
+R L+S+AS +++ A +FD + + GL++ S Q I + R
Sbjct: 111 TRPLHALLSNASTYRA---ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHR 167
Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
P V KS A + G HC + G+ D FV+ L D Y + G
Sbjct: 168 RGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDS 227
Query: 183 AFKVFDETPEKN------------KSESV---------------LLWNVLINGCSKIGYL 215
A F E P K+ KS V WN +I + G
Sbjct: 228 ALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEF 287
Query: 216 RKAVELFGMMPKKNVA--------------------------SWV------------SLI 237
R+A+ LF M ++ + +W+ +L+
Sbjct: 288 REALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALM 347
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+ +++ + +A F++MP + VV+W+ MI G+SQNG ++L +F +M + N+
Sbjct: 348 EMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEV 407
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+V LSACA++G+ E G ++ NYI L +G+AL+DMY KCG++ A VF
Sbjct: 408 TLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM 467
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++K ++TW +MI GLA++G E AI ++KM+ G +P+ F+A+LTAC ++G V +
Sbjct: 468 EQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGI 527
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
FF+ M+ + P V+H +V+LL + G++ +A FI M P+ VIW L ACR
Sbjct: 528 AFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRA 587
Query: 478 HKDTKIAKIA 487
H D ++AK+A
Sbjct: 588 HADVELAKLA 597
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 13/243 (5%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT T + S+ + R+ A I +L + + T L+ ++ID A F
Sbjct: 305 NAITITTVFSICAKTGDLDTGRRARAWIREEDL-QNVIVHTALMEMYVKCRAIDEARHEF 363
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +++ ++ +I G ++N + F M + +PN +T V + A L
Sbjct: 364 DRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDE 423
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
LG + I + +++ L DMY + G A VF+ +K V+ WN +I
Sbjct: 424 LGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQK----VVVTWNSMI 479
Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
G + G+ A+ L+ G+ P N ++V+L+ G + K FE+M +K
Sbjct: 480 RGLALNGFAEDAIALYRKMVGDGIQP--NEVTFVALLTACTHAGLVDKGIAFFEEMKKKQ 537
Query: 261 VVS 263
VS
Sbjct: 538 HVS 540
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K+++ N +T ++S S + QI I L +S + + LI +
Sbjct: 397 MKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGH 456
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A S+F+ K + +N +IRGLA N + I+ + M+ ++PN +T+ + +
Sbjct: 457 VARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTA 516
Query: 139 VASLSLLSLG--------RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK-VFDE 189
L+ G + H V VE+ A + D+ + G+ A+K + D
Sbjct: 517 CTHAGLVDKGIAFFEEMKKKQH---VSPQVEHCACI----VDLLCKSGRLWEAYKFICDM 569
Query: 190 TPEKNKSESVLLWNVLINGC 209
E N ++W+ L++ C
Sbjct: 570 EVEPN----AVIWSTLLSAC 585
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 223/419 (53%), Gaps = 35/419 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
+D A S+F+ +++ +N +I G +N + F ML S+ P+ T V
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A+L + +G+ +H I+++ + Y++ V L Y + G A ++ D++ E +
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL-- 363
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
NV S+ +L++G+++ GD++ A E+F M
Sbjct: 364 -------------------------------NVISFTALLEGYVKIGDMESAREMFGVMN 392
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI G+ QNG ++A+ +F M+ G N +T+ + LS CA + L+ G +
Sbjct: 393 NRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 452
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
+H + ++ A++ MYA+ G+ A +F + K+ +TWT+MI LA HG
Sbjct: 453 IHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ E+A+ F++M+ +G EPD ++ +L+AC ++G V ++D ++ ++ I P + H+
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL+R G +A FI +MP PD + WG+L ACR HK+ ++A++A + S++
Sbjct: 573 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 193/474 (40%), Gaps = 84/474 (17%)
Query: 45 KQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+ R++ +I L N+F + + + S L A +F ++ + V++
Sbjct: 82 RDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLAD----ARGVFAEMPERDAVSWTVMVV 137
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
GL F I + M P + T V S A ++GR +H +VK G+
Sbjct: 138 GLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGS 197
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
V + +MY + G A VF+ P + SV WN +++ + +G + A LF
Sbjct: 198 CVPVANSVLNMYGKCGDAETASTVFERMPVR----SVSSWNAMVSLNTHLGRMDLAESLF 253
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +++ SW ++I G ++QNG KAL
Sbjct: 254 ESMPGRSIVSWNAMIAG-------------------------------YNQNGLDAKALK 282
Query: 283 MFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F +ML ++ + ++FT+ S LSACA +G + G +VH YI + + AL+ Y
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 342
Query: 342 AKCGNIEAASLV---------------------------------FGETKEKDLLTWTAM 368
AK G++E A + FG +D++ WTAM
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 402
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-LNFFDSMR--- 424
I G +GR ++AI F+ M+ G EP+ A+L+ C LA L++ +
Sbjct: 403 IVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC-----ASLACLDYGKQIHCRA 457
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+E S ++ + +R G A +++ + + W ++ A H
Sbjct: 458 IRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 152/358 (42%), Gaps = 74/358 (20%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H VK+G+ A++ +L Y G+T G
Sbjct: 45 GRAIHARAVKAGLLASAYLCNNLLSYY---GETAGG------------------------ 77
Query: 208 GCSKIGYLRKAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
G LR A LF +P ++NV +W SL+ F + G L A +F +MPE+ VSWT
Sbjct: 78 ----AGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWT 133
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ G ++ G +A+ M G FT+ + LS+CA A G +VH+++
Sbjct: 134 VMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKL 193
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGE----------------------------- 356
G + ++++MY KCG+ E AS VF
Sbjct: 194 GLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253
Query: 357 --TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQV 413
+ +++W AMI G +G +A++ F +M++ S PD ++L+AC G V
Sbjct: 254 ESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNV 313
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVI 467
++ Y + + +++ V N L ++ G V+ A +++ ET VI
Sbjct: 314 RIGKQV-----HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 224/462 (48%), Gaps = 25/462 (5%)
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
K + A +FD +++ +N +I G N + + + M+ L + + T V
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A+ LSLG+ +H L +KS E L DMY + G GA +VF++ E+N
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 316
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
V+ W +I G ++ G A++L M K+ +V + S++ R G L ++
Sbjct: 317 --VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374
Query: 253 FEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
+ + E + A+++ +++ G E A ++F M+ + + + T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
+ L ACA + ALE G +H YI N + + ALVD+Y KCG + A L+F
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
KDL++WT MI G +HG +AI F +M +G EPD F++IL AC +SG ++
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
FF M+ D+ IEP ++H+ +V+LLSR G + KA F+ +P PD IWGAL C CR +
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNY 614
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
D ++A+ + L P+ Y + W E
Sbjct: 615 HDIELAEKVAERVFELE---PENTGYYVLLANIYAEAEKWEE 653
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 182/392 (46%), Gaps = 43/392 (10%)
Query: 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGR-----GLHCLIVKSGVEYD 163
F SCI +R+S P R + + + L LG L C+ KS +E
Sbjct: 46 FSSCIP-----IRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETK 100
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAV 219
+ V +QL +F + KS SV L L++ + G L++
Sbjct: 101 TYGSV------LQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGR 154
Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKK--------------------AGELFEQMPEK 259
+F M KKNV W ++ + + GD K+ A ELF+++ ++
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
V+SW +MI+G+ NG E+ L ++ QM+ G+ + T++S L CA G L G VH
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
+ + F + L+DMY+KCG+++ A VF + E+++++WT+MI G GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
AI+ ++M G + D +IL AC SG + + D ++ + +E ++ +
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN-MESNLFVCNAL 393
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+++ ++ G ++ A + + M D + W +
Sbjct: 394 MDMYAKCGSMEAANSVFSTMV-VKDIISWNTM 424
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 169/379 (44%), Gaps = 30/379 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+ +H+ I + + L+ S +D AL +F+ +N+ + +I G +
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
I M + V+ + + + + A L G+ +H I + +E + FV
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN--------------GCSKIG 213
L DMY + G A VF K+ ++ WN +I C+ +
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKD----IISWNTMIGELKPDSRTMACVLPACASLS 446
Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
L + E+ G + + +S +L+D +++ G L A LF+ +P K +VSWT MI
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G+ +G +A+A F +M DAG+ ++ + +S L AC+ G LE G R YI NDF +
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 565
Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + +VD+ ++ GN+ A F ET D W A++ G + E A +
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKA-YEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624
Query: 386 KKMMYSGTEPDGTVFLAIL 404
+++ EP+ T + +L
Sbjct: 625 ERVFE--LEPENTGYYVLL 641
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 41/282 (14%)
Query: 34 IISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
I S++H+ S S + +H I +N+ ++ + L+ + S++ A S+F
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMV 414
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
K++ +N +I L +S +C V + ASLS L G+
Sbjct: 415 VKDIISWNTMIGELKPDSRTMAC---------------------VLPACASLSALERGKE 453
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H I+++G D V L D+YV+ G A +FD P K+ ++ W V+I G
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD----LVSWTVMIAGYG 509
Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
GY +A+ F M + S++S++ G L++ F M E +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
+ M++ S+ G KA ++ ++ A D T+ AL
Sbjct: 570 EHYACMVDLLSRTGNLSKA----YEFMETLPIAPDATIWGAL 607
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 223/419 (53%), Gaps = 35/419 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
+D A S+F+ +++ +N +I G +N + F ML S+ P+ T V
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A+L + +G+ +H I+++ + Y++ V L Y + G A ++ D++ E +
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL-- 363
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
NV S+ +L++G+++ GD++ A E+F M
Sbjct: 364 -------------------------------NVISFTALLEGYVKIGDMESAREMFGVMN 392
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI G+ QNG ++A+ +F M+ G N +T+ + LS CA + L+ G +
Sbjct: 393 NRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 452
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
+H + ++ A++ MYA+ G+ A +F + K+ +TWT+MI LA HG
Sbjct: 453 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
+ E+A+ F++M+ +G EPD ++ +L+AC ++G V ++D ++ ++ I P + H+
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL+R G +A FI +MP PD + WG+L ACR HK+ ++A++A + S++
Sbjct: 573 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 194/474 (40%), Gaps = 84/474 (17%)
Query: 45 KQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
+ R++ +I L N+F + + + S L A +F ++ + V++
Sbjct: 82 RDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLAD----ARGVFAEMPERDAVSWTVMVV 137
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
GL F I + M P + T V S A ++GR +H +VK G+
Sbjct: 138 GLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGS 197
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
V + +MY + G + A VF+ P + SV WN +++ + +G + A LF
Sbjct: 198 CVPVANSVLNMYGKCGDSETATTVFERMPVR----SVSSWNAMVSLNTHLGRMDLAESLF 253
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
MP +++ SW ++I G ++QNG KAL
Sbjct: 254 ESMPDRSIVSWNAMIAG-------------------------------YNQNGLDAKALK 282
Query: 283 MFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F +ML ++ + ++FT+ S LSACA +G + G +VH YI + + AL+ Y
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 342
Query: 342 AKCGNIEAASLV---------------------------------FGETKEKDLLTWTAM 368
AK G++E A + FG +D++ WTAM
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 402
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-LNFFDSMR--- 424
I G +GR ++AI F+ M+ G EP+ A+L+ C LA L++ +
Sbjct: 403 IVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC-----ASLACLDYGKQIHCRA 457
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+E S ++ + +R G A +++ + + W ++ A H
Sbjct: 458 IRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 153/358 (42%), Gaps = 74/358 (20%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H VK+G+ A++ +L Y G+T G
Sbjct: 45 GRAIHARAVKAGLLASAYLCNNLLSYY---GETAGG------------------------ 77
Query: 208 GCSKIGYLRKAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
G LR A LF +P ++NV +W SL+ F + G L A +F +MPE+ VSWT
Sbjct: 78 ----AGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWT 133
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ G ++ G +A+ M G FT+ + LS+CA A G +VH+++
Sbjct: 134 VMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKL 193
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGE----------------------------- 356
G + ++++MY KCG+ E A+ VF
Sbjct: 194 GLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253
Query: 357 --TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQV 413
++ +++W AMI G +G +A++ F +M++ S PD ++L+AC G V
Sbjct: 254 ESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNV 313
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVI 467
++ Y + + +++ V N L ++ G V+ A +++ ET VI
Sbjct: 314 RIGKQV-----HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 220/419 (52%), Gaps = 35/419 (8%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
+D ALS+F++ + + +N +I G +N + F ML S + P+ T V
Sbjct: 244 MDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLS 303
Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
+ A+L ++S+G+ +H I++S + Y V L MY + G A
Sbjct: 304 ACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENAR------------- 350
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
G +++AV M NV S+ +L++G+++ GD+K A E+F+ M
Sbjct: 351 ---------------GVMQQAV-----MADLNVISFTALLEGYVKLGDMKHAREMFDVMS 390
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ VV+WTAMI G+ QNG ++A+ +F M+ +G N +TV + LS CA + LE G +
Sbjct: 391 NRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQ 450
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
+H + ++ ++V MYA+ G++ A VF K+ +TWT+MI LA HG
Sbjct: 451 IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510
Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
E A+ F++M+ G +PD F+ +L+AC + G V +F ++ + I P + H+
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHY 570
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+V+LL+R G +A FI +MP PD + WG+L ACR HK+ +A++A + S++
Sbjct: 571 ACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSID 629
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 183/437 (41%), Gaps = 82/437 (18%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A ++F ++ + V++ GL F I F+ M+ + P + T V S A+
Sbjct: 115 ARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAA 174
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+GR +H +VK G+ V + +MY + G A VF+ PE+ SV
Sbjct: 175 TEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPER----SVSS 230
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WN +++ + +G + A+ LF MP + + SW
Sbjct: 231 WNAMVSLDAHLGRMDLALSLFENMPDRTIVSW---------------------------- 262
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHN 320
A+I G++QNG KAL F +ML A D FT+ S LSACA +G + G +VH
Sbjct: 263 ---NAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA 319
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLV-----------------------FGET 357
YI + G + AL+ MYAK G++E A V G+
Sbjct: 320 YILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDM 379
Query: 358 K----------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
K +D++ WTAMI G +G ++A++ F+ M+ SG EP+ A+L+ C
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVC 439
Query: 408 W------YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
Y Q+ ++R E S +V + +R G + A +++
Sbjct: 440 ASLACLEYGKQIHC-----KAIR--SLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHW 492
Query: 462 TPDFVIWGALFCACRTH 478
+ V W ++ A H
Sbjct: 493 RKETVTWTSMIVALAQH 509
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 14/241 (5%)
Query: 215 LRKAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
R+A LF +P ++NV +W SL+ + + G L A +F +MPE+ VSWT M+ G +
Sbjct: 79 FREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLN 138
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+ G +A+ MF M+ G+ FT+ + LS+CA A G +VH+++ GL
Sbjct: 139 RVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVV--KLGLSSC 196
Query: 333 IGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
+ A +++MY KCG+ E A VF E+ + +W AM+ A GR + A+ F+ M
Sbjct: 197 VPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENM-- 254
Query: 391 SGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
PD T+ + A++ +G AL FF M + P T V++ + +G
Sbjct: 255 ----PDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGM 310
Query: 449 V 449
V
Sbjct: 311 V 311
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 150/361 (41%), Gaps = 18/361 (4%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I S P +IS+ S S + R + Q ++ +L S T L+
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVIS--FTALLEGYVKLGD 378
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ +A +FD + +++ + +I G +N H + F M+R PN T V
Sbjct: 379 MKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSV 438
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
ASL+ L G+ +HC ++S E + V + MY + G A +VFD + ++
Sbjct: 439 CASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKET-- 496
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
+ W +I ++ G AV LF M + V ++V ++ G + + F+
Sbjct: 497 -VTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQ 555
Query: 255 QMPEK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
Q+ +K G+V + M++ ++ G +A QM V + S LSAC
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM---PVEPDAIAWGSLLSACRVH 612
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
+ + D G GA +AL ++Y+ CG A+ ++ K+K + T
Sbjct: 613 KNADLAELAAEKLLSIDPGNSGAY-SALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFS 671
Query: 370 W 370
W
Sbjct: 672 W 672
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 114/262 (43%), Gaps = 16/262 (6%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
I+S +P N+ T ++S+ S + +QIH + I SS ++ +++ + S
Sbjct: 421 IRSGPEP-NSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGS 479
Query: 79 IDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ +A +FD H+ + + + +I LA++ + + F MLR+ V+P+R+T+ V
Sbjct: 480 LPWARRVFDRVHWRKETV-TWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVL 538
Query: 137 KSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
+ + + G R L K G+ + + D+ + G A + + P +
Sbjct: 539 SACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPD 598
Query: 196 SESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
+ + W L++ C A E + N ++ +L + + G A ++
Sbjct: 599 A---IAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKI 655
Query: 253 FEQMPEKGV-----VSWTAMIN 269
+++ +K V SWT + N
Sbjct: 656 WKRRKDKSVKKETGFSWTHIGN 677
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 197/364 (54%), Gaps = 37/364 (10%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ A F++ P K+ + WN LI+G ++ G ++KA +LF +MP+KN SW
Sbjct: 146 YLRSYGVEAALAFFNKMPVKD----IASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201
Query: 234 VSLIDGFMRKGDLKKAGEL-------------------------------FEQMPEKGVV 262
++I G++ GDL+ A EL F++M K +V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261
Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
+W +MI G+ +N AE L +F M+++ VR N ++ S L C+ + AL G ++H +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
S + T+L+ MY KCG++++A +F E KD+++W AMI G A HG +A+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKAL 381
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F KM +PD F+A++ AC ++G V L + +F SM+ ++ IE H+T V++L
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502
L R G++D+A++ I +MP P I+G L ACR HK+ +A+ A ++ LNL A
Sbjct: 442 LGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARN--LLNLDPTSAT 499
Query: 503 SYCQ 506
Y Q
Sbjct: 500 GYVQ 503
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 28/298 (9%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+ T +++ ++ A IF KNL +N +I G EN + + F M+
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
VRPN L+ V ++LS L LGR +H L+ KS + D L MY + G A+
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
K+F E P K+ V+ WN +I+G ++ G RKA+ LF M K + ++V++I
Sbjct: 351 KLFLEMPRKD----VISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406
Query: 241 MRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
G + + F+ M E V +T +I+ + G ++A+++ +M
Sbjct: 407 NHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM-------- 458
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM--YAKCGNIEAAS 351
F +A+ G L R+H + +F + + Y + NI AA+
Sbjct: 459 PFKPHAAI-----YGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511
>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
gi|219885333|gb|ACL53041.1| unknown [Zea mays]
gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
Length = 528
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 234/468 (50%), Gaps = 76/468 (16%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL---SLLSLGRGLHC 153
+ + IR A+ + I+ ++ LR S RP V KSV L ++L LH
Sbjct: 14 WTLAIRAAADQGRPRRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHAVLPAAASLHA 73
Query: 154 LIVKSGVEYDAFVRVHLADMYVQL-----GKTRGAFKVFDETP----------------- 191
+++ G+ + L+ +Y L RG + D+ P
Sbjct: 74 HLLRLGLLSHPYPHAALSHLYSHLLPPHHNHARG---LLDDAPTPLNRHSLVSSNSLLAS 130
Query: 192 --------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
E + V+ WN ++ G +K G+L +A+E+F MP+ NVASW +L+
Sbjct: 131 LLRAGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALV 190
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS------------------------- 272
GFM +G L +A ELFE+MP + VSW MI+G++
Sbjct: 191 SGFMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNA 250
Query: 273 ------QNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
QNG A +AL +F +ML V N+ T S +SAC+++G L G+ V N++
Sbjct: 251 MISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGY 310
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
L + TALVD+Y K G ++ A +F + +D+++++AMI G +HG+ +A+
Sbjct: 311 VGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGL 370
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
FK+M + +P+ F+ +L+A ++G ++ A F SM Y I PS++H+T++V++L
Sbjct: 371 FKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILG 430
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC 492
R G++++A + ++P PD +WGAL ACR H + ++ ++ + S C
Sbjct: 431 RCGKLEEAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEV-VASKC 477
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 147/339 (43%), Gaps = 40/339 (11%)
Query: 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIIS---LIHSSNSTKQLRQIHAQIILHNLFAS 62
+N + +A ++ + + + + ET++ S L+ + L Q AQ + +
Sbjct: 155 WNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGFMAQGHLAQ--AQELFERMPTR 212
Query: 63 SRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
+ ++ +IS + + A ++FD K+L+ +N +I A+N + + F ML
Sbjct: 213 NNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRML 272
Query: 122 R--LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+ + V PN T+ V + + L L G + + GV+ D +R L D+Y + G+
Sbjct: 273 KPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGR 332
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
AF +F +S V+ ++ +I GC G L +AV LF M K N ++V
Sbjct: 333 MDRAFDLFRGL----RSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVG 388
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDA 290
L+ + G L++A F M + ++ +T M++ + G+ E+A
Sbjct: 389 LLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLEEA---------- 438
Query: 291 GVRANDFTVVSALSACAKV---GALEAGVRVHNYISCND 326
F +V + C GAL R+HN I +
Sbjct: 439 ------FQLVMQIPVCPDASVWGALLLACRLHNNIELGE 471
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 216/443 (48%), Gaps = 40/443 (9%)
Query: 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
QIHA I + + L+ S + A FD +N+ +N LI +N
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNG 231
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+ FV M+ V P+ +T V + AS S + G +H +VK
Sbjct: 232 PAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKR---------- 281
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
D Y ++L N L++ +K + +A +F MP +
Sbjct: 282 ---DKY---------------------RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
NV S S++ G+ R +K A +F M EK VVSW A+I G++QNGE E+A+ +F +
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLK 377
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------IGTALVDMYA 342
+ +T + L+ACA + L+ G + H I + F + +G +L+DMY
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYM 437
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG +E LVF E+D+++W AMI G A +G A++ F+KM+ SG +PD +
Sbjct: 438 KCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIG 497
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V+ +F SMR + + P H T +V+LL R G +D+A + I MP
Sbjct: 498 VLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQ 557
Query: 463 PDFVIWGALFCACRTHKDTKIAK 485
PD V+WG+L AC+ H + ++ K
Sbjct: 558 PDNVVWGSLLAACKVHGNIELGK 580
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 142/271 (52%), Gaps = 12/271 (4%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S + + N L++ K GY A ++F MP++N S+ +++ + G L +A +F+
Sbjct: 51 SSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKS 110
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE SW AM++GF+Q+ E+AL F M N+++ SALSACA + L G
Sbjct: 111 MPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMG 170
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+++H IS + + L +G+ALVDMY+KCG + A F +++++W ++I +
Sbjct: 171 IQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQN 230
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF------DSMRFDYFI 429
G +A++ F MM +G EPD ++++AC ++ L D R D +
Sbjct: 231 GPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVL 290
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+V++ ++ +V++A ++MP
Sbjct: 291 ------GNALVDMYAKCRRVNEARLVFDRMP 315
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 27/352 (7%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
++ + + R + ++ L N+ + T ++ + S+ A +F + KN
Sbjct: 294 LVDMYAKCRRVNEARLVFDRMPLRNVVSE----TSMVCGYARAASVKAARLMFSNMMEKN 349
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ +N LI G +N + + F+ + R S+ P T+ + + A+L+ L LGR H
Sbjct: 350 VVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHT 409
Query: 154 LIVK------SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
I+K SG E D FV L DMY++ G VF+ E++ V+ WN +I
Sbjct: 410 QILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERD----VVSWNAMIV 465
Query: 208 GCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQM-PEKGVV 262
G ++ GY A+E+F M K + + + ++ G +++ F M E G+
Sbjct: 466 GYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLA 525
Query: 263 S----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+T M++ + G ++A + M ++ ++ S L+AC G +E G V
Sbjct: 526 PMKDHFTCMVDLLGRAGCLDEANDLIQTM---PMQPDNVVWGSLLAACKVHGNIELGKYV 582
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
+ D L L +MYA+ G + V + +++ ++ W
Sbjct: 583 AEKLMEID-PLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSW 633
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
L +C + + R+H I F + I LVD Y KCG E A VF +++
Sbjct: 26 LDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNT 85
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++ A++ L G+ ++A FK M EPD + A+++ + + AL FF
Sbjct: 86 FSYNAVLSVLTKFGKLDEAFNVFKSM----PEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141
Query: 423 MRFDYFI 429
M + F+
Sbjct: 142 MHSEDFV 148
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 225/463 (48%), Gaps = 47/463 (10%)
Query: 35 ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+SL++S N+ + L R+IH+ I L + LI+ S+ A IFD +
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSK 321
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLLS 146
+++ ++ +I G A++ + VF L R V PN++T+ + ++ + L
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H + K G E D ++ + +MY
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMY-------------------------------- 409
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+K G + +A ++F M KNV +W S + +++ GDL A ++F +MP + VVSW
Sbjct: 410 ---AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNL 466
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI G++QNG+ K + M G + + TV++ L AC + LE G VH
Sbjct: 467 MIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVH--AEAVK 524
Query: 327 FGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
GL+ + T+L+ MY+KCG + A VF + +D + W AM+ G HG +A+
Sbjct: 525 LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDL 584
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
FK+M+ P+ A+++AC +G V+ F M+ D+ + P +H+ +V+LL
Sbjct: 585 FKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLG 644
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G++ +A FI MP PD +W AL AC++H + ++A+ A
Sbjct: 645 RAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERA 687
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/512 (25%), Positives = 228/512 (44%), Gaps = 90/512 (17%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
KQL ++ +I ++ + LI+ S + + A +F T +++ ++ +I
Sbjct: 80 KQLDELGVEIDIY-------LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
A N+H F M ++ PNR+T+ + K+ + S+L GR +H ++ G+E D
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDV 192
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
V L MY + G+ A +VF + E+N V+ W +I ++ L +A EL+
Sbjct: 193 AVATALITMYSKCGEISVACEVFHKMTERN----VVSWTAIIQANAQHRKLNEAFELYEQ 248
Query: 225 MPK----KNVASWVSLIDG-----------------------------------FMRKGD 245
M + N ++VSL++ + +
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLD----AGVRANDFTVV 300
+++A E+F++M ++ V+SW+AMI G++Q+G +K ++ FQ+L+ GV N T +
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S L AC GALE G ++H +S F L ++ TA+ +MYAKCG+I A VF + K
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428
Query: 361 DLLTWTA-------------------------------MIWGLAIHGRYEQAIQYFKKMM 389
+++ WT+ MI G A +G + + M
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488
Query: 390 YSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G +PD + IL AC +G + L ++++ +E T ++ + S+ GQ
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLG--LESDTVVATSLIGMYSKCGQ 546
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKD 480
V +A +KM D V W A+ H D
Sbjct: 547 VAEARTVFDKMS-NRDTVAWNAMLAGYGQHGD 577
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 12/232 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
+T I ++ S + Q+ +++ N+ A + + I L A +F
Sbjct: 402 QTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS----AEKVFSEMP 457
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N+ +N++I G A+N M +P+R+T + ++ +L+ L G+
Sbjct: 458 TRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL 517
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H VK G+E D V L MY + G+ A VFD+ ++ + WN ++ G
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRD----TVAWNAMLAGYG 573
Query: 211 KIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ G +AV+LF M K+ V+ + ++I R G +++ E+F M E
Sbjct: 574 QHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 6/207 (2%)
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI- 333
G +A+ + + G+ N T + CAK E G VH + ++ G++ I
Sbjct: 35 GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQL--DELGVEIDIY 92
Query: 334 -GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
G +L++ Y+K ++ +A VF +D++TW++MI A + +A F++M +
Sbjct: 93 LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
EP+ FL+IL AC ++ ++ +E V T ++ + S+ G++ A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKA-MGMETDVAVATALITMYSKCGEISVA 211
Query: 453 LNFINKMPETPDFVIWGALFCACRTHK 479
+KM E + V W A+ A H+
Sbjct: 212 CEVFHKMTER-NVVSWTAIIQANAQHR 237
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/251 (17%), Positives = 99/251 (39%), Gaps = 40/251 (15%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
+HA+ + L + + + T LI S + A ++FD + ++ +N ++ G ++
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGD 577
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ F ML+ V PN +T V + + L+ GR + ++ +
Sbjct: 578 GLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQED----------- 626
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KK 228
F TP K + +++ + G L++A E MP +
Sbjct: 627 -----------------FKMTPRKQH------YGCMVDLLGRAGRLQEAEEFIQSMPCEP 663
Query: 229 NVASWVSLIDGFMRKGDL----KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+++ W +L+ ++ + A + E P V + + N ++Q G + + +
Sbjct: 664 DISVWHALLGACKSHNNVQLAERAAHHILELEPSYASV-YITLSNIYAQAGRWDDSTKVR 722
Query: 285 FQMLDAGVRAN 295
M D G++ +
Sbjct: 723 RVMDDRGLKKD 733
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/517 (28%), Positives = 248/517 (47%), Gaps = 43/517 (8%)
Query: 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
A+ T +K + + +T ++S S+ + + Q+H+ +I + + + L+
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD 357
Query: 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
I A +F +N+ ++NV++ + + F M + PN+ T
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT 417
Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
YP + ++ S+ L LG +H ++K+G +++ +V L DMY + GK A +
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------- 232
E + V+ W LI+G ++ +A++ F M + + S
Sbjct: 478 E----DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533
Query: 233 ---------WVS-----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
+VS L+ + R G +K+A FE++ K +SW +I+GF+
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
Q+G E AL +F QM A + A+ FT SA+SA A + ++ G ++H I F
Sbjct: 594 QSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIE 653
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+ AL+ YAKCG+IE A F E EK+ ++W AMI G + HG +A+ F+KM G
Sbjct: 654 VSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVG 713
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
P+ F+ +L+AC + G V L +F+SM ++ + P H+ VV+L+SR G + +A
Sbjct: 714 EMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRA 773
Query: 453 LNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
FI +MP PD IW L AC HK+ ++ + A Q
Sbjct: 774 RKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQ 810
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/470 (25%), Positives = 210/470 (44%), Gaps = 45/470 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
Q+HA + + + + L++ S + A +F K+ FN LI GLA+
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M R ++P+ +T + + AS L G LH ++K+G+ D V
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L D+YV + A ++F ++E+V+LWNV++ K+ L ++ +F
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTA----QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408
Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
G++P + NV LID + + G L
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A + + E VVSWTA+I+G++Q+ +AL F +ML+ G+++++ SA+SACA
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+ AL G ++H + + +IG ALV +YA+CG I+ A L F + KD ++W +
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGL 588
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G A G E A++ F +M + E F + ++A +K +M
Sbjct: 589 ISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRG 647
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ ++ ++ ++ G ++ A +MPE D V W A+ H
Sbjct: 648 FDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND-VSWNAMITGYSQH 696
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 211/466 (45%), Gaps = 51/466 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
QIHA+II H L S I+ LI + + I A +FD+ K+ + +I G ++N
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + I F M + P + V + L +G LH L+ K G + +V
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L +Y ++ A KVF + K++ + +N LI+G ++ G+ A+ELF M +
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDE----VSFNSLISGLAQQGFSDGALELFTKMKR 307
Query: 228 K-------NVASWVS--------------------------------LIDGFMRKGDLKK 248
VAS +S L+D ++ D+K
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F + VV W M+ F + ++ +F QM G+ N FT S L C
Sbjct: 368 AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
VGAL+ G ++H + F + + L+DMYAK G ++ A ++ E D+++WTA+
Sbjct: 428 VGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTAL 487
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G A H + +A+++FK+M+ G + D F + ++AC ++ ALN + +
Sbjct: 488 ISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC---AGIQ-ALNQGRQIHAQSY 543
Query: 429 IEPSVKHHTV---VVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ + ++ +V+L +R G++ +A K+ + D + W L
Sbjct: 544 VSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKI-DAKDSISWNGL 588
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 107/493 (21%), Positives = 213/493 (43%), Gaps = 46/493 (9%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N T ++ L +S S + +++H +I+ S + +L+ +D + +
Sbjct: 8 ANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKV 67
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL- 144
F+ +++ ++ +I G E + F M+ +V P +++ V ++ + +
Sbjct: 68 FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG 127
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
+ +H I+ G+ + L +Y + G A KVFD K+ + W
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDS----VSWVA 183
Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------ 234
+I+G S+ GY +A+ LF G+ P V S V
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L+ + R + A ++F +M K VS+ ++I+G +Q G ++ AL +F
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
+M ++ + TV S LSACA GAL G ++H+Y+ + AL+D+Y C
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+I+ A +F + ++++ W M+ ++ + F++M G P+ + +IL
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C G + L + F + +V +V++++ ++ G++D A + + E D
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGF-QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE-DDV 481
Query: 466 VIWGALFCACRTH 478
V W AL H
Sbjct: 482 VSWTALISGYAQH 494
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%)
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M G+ AN T + L C G+L ++H I FG + + LVD+Y G+
Sbjct: 1 MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
++ VF + + + +W +I G + + F M+ P F ++L A
Sbjct: 61 LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120
Query: 407 C 407
C
Sbjct: 121 C 121
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/486 (29%), Positives = 239/486 (49%), Gaps = 49/486 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H ++ + S + + L+S S + + A F K++ + +I +
Sbjct: 587 RCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRM 646
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
CI F ML + P+ + + S ++ + + H LI++ D V+
Sbjct: 647 GWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQ 706
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
L MY + G + A K F E+N WN++++G KIG + K + LF M
Sbjct: 707 NALLSMYCKFGFLKLAEKFFGRVNEQN----FEAWNLMVSGYGKIGLIMKCIGLFREMQC 762
Query: 227 --------------------------------------KKNVASWVSLIDGFMRKGDLKK 248
+NV+ SLID + + G+L
Sbjct: 763 LGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTI 822
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A +F ++P + +V+W +I+ ++ G +AL+++ +M+ ++ N T+V LSAC+
Sbjct: 823 ARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSH 881
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+ +LE G +VHNYI+ F +I TAL+DMYAKCG +E + +F E+D++TW M
Sbjct: 882 LASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVM 941
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G +HG AI+ F++M S +P+G FLA+L+AC ++G VK F M+ DY
Sbjct: 942 ISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQ-DYS 1000
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD----TKIA 484
+ P++KH+ +V+LL R G + +A + MP +PD +WGAL +C+ H + +IA
Sbjct: 1001 VAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIA 1060
Query: 485 KIALQS 490
K A+ S
Sbjct: 1061 KHAIXS 1066
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 187/401 (46%), Gaps = 52/401 (12%)
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN T ++ +L L GR LH L+VK+G++Y V+ L MY + G A +
Sbjct: 564 RPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHR 623
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV----- 234
F E K+ ++ W +I+ S++G+ + +++F G+ P V S +
Sbjct: 624 SFCEVLNKD----IISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFS 679
Query: 235 ----------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+L+ + + G LK A + F ++ E+ +W
Sbjct: 680 NSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNL 739
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M++G+ + G K + +F +M G+ ++ ++VS +S+C+++GA +H Y+ N
Sbjct: 740 MVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNL 799
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ +L+DMY K GN+ A +F +D++TW +I A G + +A+ +
Sbjct: 800 MDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYD 858
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLL 443
KM+ +P+ + +L+AC + ++ N+ + +F++ + + T ++++
Sbjct: 859 KMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIA----TALIDMY 914
Query: 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIA 484
++ GQ++K+ N M E D + W + H D + A
Sbjct: 915 AKCGQLEKSREIFNSMHER-DVITWNVMISGYGMHGDARSA 954
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 169/401 (42%), Gaps = 51/401 (12%)
Query: 41 SNSTK--QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
SNS + + + H II + + L+S + A F +N +N
Sbjct: 679 SNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWN 738
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+++ G + CI F M L + + + V S + L L R +HC ++K+
Sbjct: 739 LMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKN 798
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
++ + V L DMY + G A ++F P ++ WN LI+ + G+ +A
Sbjct: 799 LMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-----RDIVTWNTLISSYAHCGHFAEA 853
Query: 219 VELFGMMP----KKNVASWV-----------------------------------SLIDG 239
+ L+ M K N A+ V +LID
Sbjct: 854 LSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDM 913
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + G L+K+ E+F M E+ V++W MI+G+ +G+A A+ F QM ++ + N T
Sbjct: 914 YAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTF 973
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGE 356
++ LSACA G ++ G + + D+ + + +VD+ + GN+ EA +LV
Sbjct: 974 LAVLSACAHAGLVKEGKYLFGKM--QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSM 1031
Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
D W A++ IH E I+ K + S E DG
Sbjct: 1032 PISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDG 1072
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 6/214 (2%)
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ V W +NG S+ G + L ++ G R N T+ AC +GAL G +
Sbjct: 532 RNVEFWRRHMNGESKMGL--ECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCL 589
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + + ++L+ MY+KCGN E A F E KD+++WT+MI + G
Sbjct: 590 HGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWA 649
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHT 437
+ I F +M+ SG PDG V +L++ S +V A F +R Y ++ V++
Sbjct: 650 TECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQN-- 707
Query: 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++++ + G + A F ++ E +F W +
Sbjct: 708 ALLSMYCKFGFLKLAEKFFGRVNEQ-NFEAWNLM 740
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 132/302 (43%), Gaps = 27/302 (8%)
Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPN--RLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
IRGLA F +S ++ +P L + +V V+ + + + C +K
Sbjct: 137 IRGLASAEKFFEDLSD-----KMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKC 191
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
+ Y+ + ++++D QL K G + +KN S V+ +N+ + C+ + A
Sbjct: 192 PLPYNHMISLYISDG--QLEKVPGMIQEL----KKNTSPDVVTYNLWLTVCASQNDVETA 245
Query: 219 VELFGMMPKKNV-ASWV---SLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMING 270
++ + K + WV SL + +++KG L KA +M + KG ++++++I+
Sbjct: 246 EKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISL 305
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGL 329
+ + + ++ ++ + ND +S+ K+G E +++ + S + G
Sbjct: 306 HTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTG- 364
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----TWTAMIWGLAIHGRYEQAIQYF 385
+ L+ Y +E A + + E+ + TW + WG + E+ + YF
Sbjct: 365 DSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYF 424
Query: 386 KK 387
+K
Sbjct: 425 EK 426
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 241/459 (52%), Gaps = 42/459 (9%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRP 127
++S + ++D A +F+ +N+ +N ++ G N H + I F M R S
Sbjct: 158 MLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASL 217
Query: 128 NRLTYPFV--SKSVASLSLL-----SLGRG-----LHCLIV---KSGVEYDA---FVRVH 169
L + K V + +L ++G+G + LI + G+ Y+A F R+
Sbjct: 218 RALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIP 277
Query: 170 LA-----------------DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
L YV+ G A ++FD+ E++ WN +I+G +I
Sbjct: 278 LCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERD----TFSWNTMISGYVQI 333
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
+++A LF MP+ + SW +I GF G LK A +LF+++PEK +VSW +MI+G+
Sbjct: 334 LDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYE 393
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+N + + A+ +F QM G + + T+ S LSACA + L G ++H ++ F
Sbjct: 394 KNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVT-KAFIADLP 452
Query: 333 IGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
I +LV MY++CG I A +VF E ++D+++W AMI G A HG +A+Q F M
Sbjct: 453 INNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQC 512
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
+P F+++L AC ++G ++ F+SM + I+P V+H+ +V+++ R GQ+++
Sbjct: 513 NVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEE 572
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
A++ IN MP PD +WGAL AC+ H + ++A+ A ++
Sbjct: 573 AMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEA 611
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 43/329 (13%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG--YLRKAVELFGMMPKKNVA 231
YV+ + A ++F+E P ++ ++ WN++++G G ++ +A +F MP+ +
Sbjct: 98 YVKRREMLKARQLFEEMPNRD----IVSWNLMLSGYISCGGKFVERARNMFDQMPETDCV 153
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF------- 284
SW +++ G+ + G + KA ELF +MPE+ VVSW AM++G+ NG EKA+ F
Sbjct: 154 SWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRD 213
Query: 285 ---FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-CNDFGLKGAIGTA--LV 338
+ L +G+ ND V + G + G V Y + +G KG A L
Sbjct: 214 SASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLF 273
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
D C + G ++ +++++W +MI G A + F KM+ T T
Sbjct: 274 DRIPLCCDC-------GYSR-RNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNT 325
Query: 399 V---FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+ ++ IL +K A N F M EP ++++ S +G + A +
Sbjct: 326 MISGYVQIL-------DMKEASNLFSRMP-----EPDTLSWNMMISGFSEIGSLKLAHDL 373
Query: 456 INKMPETPDFVIWGALFCACRTHKDTKIA 484
++PE V W ++ ++D K A
Sbjct: 374 FKRIPEK-SLVSWNSMISGYEKNEDYKGA 401
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 41/180 (22%)
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ G + +A ELF N +W +I ++++ ++ KA +LFE+MP + +VSW M++G
Sbjct: 69 RTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSG 128
Query: 271 FSQNGE--AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+ G E+A MF QM + + C + +G
Sbjct: 129 YISCGGKFVERARNMFDQMPE--------------TDCVSWNTMLSG------------- 161
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
YAK G ++ A +F E E+++++W AM+ G ++G E+AI++FK M
Sbjct: 162 ------------YAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 37/418 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A +FD +++ + LI G A F M+ SV PN +T + +
Sbjct: 185 ARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAG 244
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ LL LGR +H IV+SG G+ SV
Sbjct: 245 QMGLLGLGRTVHQCIVESG------------------GRM-----------------SVN 269
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
L N L++ K G + A E+F MP K+V SW S++ + + GDL+ A +LF+++P +
Sbjct: 270 LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRN 329
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW+ M+ +S ++A+ +F M+ AGV D T+VS LSACA++ +L+ G +++
Sbjct: 330 VVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYD 389
Query: 321 -YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI + L + A +DM+AKCG++ AAS +F ++K++++W MI +HG+ E
Sbjct: 390 TYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPE 449
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ F++ +G PD ++ +L+AC + G V F M+ Y IEP +H+ +
Sbjct: 450 EALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACM 509
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
++LL +VG + +A MP D WGAL ACR H + +I K A L+ S
Sbjct: 510 IDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPS 567
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALS 304
L A +LF++M ++ VVSWT +I+G+++ G ++A +F +M+ A V N+ T+V+A S
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAAS 241
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A ++G L G VH I + + + ALVDM+ KCG + AA VF KD+ +
Sbjct: 242 AAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYS 301
Query: 365 WTAMIWGLAIHGRYE-------------------------------QAIQYFKKMMYSGT 393
WT+M+ A G E +AI+ F M+ +G
Sbjct: 302 WTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
EP +++L+AC + + +D+ + +E + +++ ++ G V A
Sbjct: 362 EPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAAS 421
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ M E + V W + A H + A
Sbjct: 422 RLFSNM-EDKNVVSWNTMIMAHGLHGQPEEA 451
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ GF + G+ AL +F ++L + + T+V A+ A A + I C
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA------IHCVA 156
Query: 327 F-----GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
F G G ALV MY + A +F E ++D+++WT +I G A G ++A
Sbjct: 157 FKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEA 216
Query: 382 IQYFKKMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M+ + + P+ +A +A G + L + + SV +V
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCI-VESGGRMSVNLENALV 275
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ + G V A + MP D W ++ A
Sbjct: 276 DMFGKCGCVAAAKEVFDGMP-IKDVYSWTSMVSA 308
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++S+ + ++ A +F +N+ ++ ++ + + I F M+ V
Sbjct: 303 TSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
P T V + A L L +G L+ IV VE + DM+ + G A +
Sbjct: 363 PIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASR 422
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDG 239
+F +KN V+ WN +I G +A+ LF G++P + A+++ ++
Sbjct: 423 LFSNMEDKN----VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDE--ATYIGVLSA 476
Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + + F++M E + MI+ + G ++A + M V A
Sbjct: 477 CSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSM---PVGA 533
Query: 295 NDFTVVSALSACAKVGALEAG 315
++ + L+AC G +E G
Sbjct: 534 DEAGWGALLNACRMHGNVEIG 554
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 218/442 (49%), Gaps = 52/442 (11%)
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N+ FN +I G N + + M V P++ T+P K A L +L + + +H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIK--ACLDVLEIKK-IH 159
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
L+ K G+E D F+ L + Y++ G A F+E P ++ V+LWN ++NG ++I
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD----VVLWNAMVNGYAQI 215
Query: 213 GYLRKAVELFGMM------PKK---------------------------------NVASW 233
G +E F M P + VA
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
SLID + + ++ A E+FE M EK + SW ++++ Q G+ + L + +ML AG++
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA------IGTALVDMYAKCGNI 347
+ TV + L AC+ + AL G +H Y+ + G G + A++DMYAKCG++
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A LVF KD+ +W MI G +HG +A++ F +M +PD F+ +L+AC
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G V NF M+ Y + P+++H+T V+++L R GQ+D+A MP + V+
Sbjct: 456 SHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV 515
Query: 468 WGALFCACRTHKDTKIAKIALQ 489
W AL ACR HK +A++A Q
Sbjct: 516 WRALLAACRLHKHAVLAEVAAQ 537
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 157/380 (41%), Gaps = 57/380 (15%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
++++IH + L I + L++ +++A F+ +++ ++N ++ G A
Sbjct: 154 EIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 213
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ F+ + F M SV P+R T A + L+ GR +H +K G +
Sbjct: 214 QIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 273
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN------------------ 207
V L DMY + A ++F+ EK+ + WN +++
Sbjct: 274 VSNSLIDMYGKCKCIEDALEIFEMMREKD----IFSWNSIVSVHEQCGDHDGTLRLLDRM 329
Query: 208 -----------------GCSKIGYLRKAVELFGMM-------PKKNVASWV---SLIDGF 240
CS + L E+ G M K++ + ++ID +
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 389
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ G ++ A +FE+M K V SW MI G+ +G +AL MF +M + ++ ++ T V
Sbjct: 390 AKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 449
Query: 301 SALSACAKVGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFG 355
LSAC+ G + G N++ S D T ++DM + G + EA L
Sbjct: 450 GVLSACSHAGFVSQG---RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALT 506
Query: 356 ETKEKDLLTWTAMIWGLAIH 375
E + + W A++ +H
Sbjct: 507 MPIEANPVVWRALLAACRLH 526
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
KAGE + E V ++ A+I+GF NG E+ + +M + GV + FT A+ AC
Sbjct: 92 KAGE-NDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACL 150
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
V ++ ++H + L IG+ALV+ Y K G +E A + F E +D++ W A
Sbjct: 151 DVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV---KLALNFFDSMR 424
M+ G A G++E ++ F++M P L+ G + ++ F M
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMG 267
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA---CRTHKDT 481
+D + S ++++ + ++ AL M E D W ++ C H T
Sbjct: 268 YDSGVAVS----NSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDGT 322
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLH-----KSIDYALSI 85
+H+ +L+H R+IH +I+ L + I L+ +A + S+ A +
Sbjct: 349 SHLAALMHG-------REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ + K++ +N++I G + + + F M + ++P+ +T+ V + + +
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
S GR +V+ +YD + + DM + G+ A+++ P E N +
Sbjct: 462 SQGRN---FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANP----V 514
Query: 201 LWNVLINGCS--KIGYLRK--AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W L+ C K L + A +F + P ++ S+V + + + G ++ E+ M
Sbjct: 515 VWRALLAACRLHKHAVLAEVAAQRVFELEP-EHCGSYVLMSNVYGAVGRYEEVLEVRHTM 573
Query: 257 PEKGV-----VSWTAMINGFSQNGEAEKA 280
++ V SW + NG A++A
Sbjct: 574 RQQNVRKTPGCSWIELKNGVHVFVSADRA 602
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 221/445 (49%), Gaps = 47/445 (10%)
Query: 100 LIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
+I G +NS F+ I F M L R + T V +VA L L LG + CL +K
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
G + L ++ + G+ A +F E +K+ ++ N +I+G + G +
Sbjct: 61 GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKD----LISCNAMISGFTCNGETEDS 116
Query: 219 VELF----------------GMMP-------------------KKNVASWVS----LIDG 239
V LF G++P K + S S L
Sbjct: 117 VRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTV 176
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ R ++ A +LF++ EK + SW AMI+G +QNG + A+++F M V N TV
Sbjct: 177 YCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTV 236
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
S LSACA++GAL G VH+ I N F + TAL+DMYAKCG+I A +F E
Sbjct: 237 TSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPE 296
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
K+ +TW AMI G +HG ++A++ F M+ S +P G FL++L AC ++G VK
Sbjct: 297 KNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F +M D+ EP +H+ +V++L R GQ+ KAL FI MP P +WGAL AC HK
Sbjct: 357 FHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHK 416
Query: 480 DTKIAKIALQSSCSLNLSIPQAMSY 504
DT +A +A + L+ P+ + Y
Sbjct: 417 DTNLAHVASEKLFELD---PENIGY 438
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 13/247 (5%)
Query: 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
IH + + + S ++T L + + +A +FD K L +N +I G +N
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213
Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
+ IS F M + +V PN +T + + A + LSLG +H LI + E + +V
Sbjct: 214 TDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTA 273
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
L DMY + G A ++FD PEKN+ + WN +I+G G+ ++A++LF M +
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNE----VTWNAMISGYGLHGHGQEALKLFYDMLSSS 329
Query: 230 VA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
V +++S++ G +K+ +F M E + M++ + G+ +KA
Sbjct: 330 VKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389
Query: 281 LAMFFQM 287
L M
Sbjct: 390 LEFIKAM 396
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 1 MKGHVFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
+ G N LT AI+ ++ ++ N +T T I+S + +H+ I +
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF 264
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
++ ++T LI + SI A +FD KN +N +I G + H Q + F
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
ML SV+P LT+ V + + L+ G G+ H ++ G E A + D+ + G
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAG 384
Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+ + A + P + +W L+ C
Sbjct: 385 QLKKALEFIKAMPVEPGPP---VWGALLGAC 412
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 167/273 (61%)
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP+K++ S ++I + + G + +A LF+ + E+ + W MI+G++Q+G + L +F
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
QML+A VR N+ TV++ LSAC + GALE G VH+YI N G+ +GT+L+DMY+KC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G++E A LVF KD++ W +M+ G A+HG + A++ FK+M G +P F+ +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
AC ++G V FF SM+ +Y IEP V+H+ +VNLL R G +++A + M D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
V+WG L ACR H + + + + S NL+
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLA 273
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 21/304 (6%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I+ + + ID A +FD ++ +NV+I G A++ + F ML VR
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN +T V + L GR +H I +G+ + V L DMY + G A V
Sbjct: 70 PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGF 240
F+ K+ V+ WN ++ G + G+ + A+ LF G P +++ +++
Sbjct: 130 FERISNKD----VVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTD--ITFIGVLNAC 183
Query: 241 MRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
G + + + F M E V + M+N + G E+A + M + +
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNM---EIDQD 240
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ L AC G + G ++ Y+ + G L ++YA GN E + V
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTY-VLLSNIYAAAGNWEGVARVRT 299
Query: 356 ETKE 359
KE
Sbjct: 300 LMKE 303
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 52/267 (19%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--- 230
Y + G A +FD E++ + WNV+I+G ++ G + + LF M V
Sbjct: 16 YAKYGMIDEARVLFDGLEERD----AICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPN 71
Query: 231 -------------------ASWV-----------------SLIDGFMRKGDLKKAGELFE 254
WV SLID + + G L+ A +FE
Sbjct: 72 EVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFE 131
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
++ K VV+W +M+ G++ +G ++ AL +F +M G + D T + L+AC+ G +
Sbjct: 132 RISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSE 191
Query: 315 GVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWG 371
G + Y +++G++ + +V++ + G +E A LV ++D + W ++
Sbjct: 192 GWKFF-YSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250
Query: 372 LAIHGRY---EQAIQYF--KKMMYSGT 393
+HG EQ +Y + + SGT
Sbjct: 251 CRLHGNIALGEQIAEYLVSQNLANSGT 277
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 102/238 (42%), Gaps = 7/238 (2%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N +T ++S + + + R +H+ I + + + R+ T LI S S++ A +F
Sbjct: 71 NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ + K++ +N ++ G A + Q + F M + +P +T+ V + + L+S
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190
Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G + + + + G+E H M LG+ + ++ + +LW L
Sbjct: 191 EGWKFFYSMKDEYGIEPKV---EHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTL 247
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA---SWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
+ C G + ++ + +N+A ++V L + + G+ + + M E G
Sbjct: 248 LGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESG 305
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 184/315 (58%), Gaps = 6/315 (1%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y+ +G A +F+ P + V WN++I+GC K G + A E F M ++NVASW
Sbjct: 240 YMSVGNLVAARNLFELMPIHD----VGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASW 295
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
V +IDG+++ GD+ A +F+QMPEK +V+W+ MI G+++ G +L ++ + G++
Sbjct: 296 VMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIK 355
Query: 294 ANDFTVVSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
++ + +SAC+++G + V +++ + F + T+L+DMYAKCGNIE A
Sbjct: 356 PDETFALGIISACSQLGVPDTAESVICDFVGPSLFP-NLQVVTSLIDMYAKCGNIERAVQ 414
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF +KDL ++ +I A HG E AI F +M + +PDG FL +LTAC + G
Sbjct: 415 VFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGL 474
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
V F M +Y I+PS KH+ +V++L R G +++A + I MP P+ +WGAL
Sbjct: 475 VGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALL 534
Query: 473 CACRTHKDTKIAKIA 487
ACR H + ++A+ A
Sbjct: 535 SACRVHLNVQLAEAA 549
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 226/449 (50%), Gaps = 21/449 (4%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPK 92
I L+ S K L IHA +++ ASS +T +L+ S ++ YA +FD
Sbjct: 6 ISKLLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEP 65
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
N ++ LI G EN+ +++ + F+ M R ++ P T V K+V+ L + G ++
Sbjct: 66 NSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVY 125
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
L V+ G E+D V+ + +++++ G+ A ++FDE E++ + WN +I G
Sbjct: 126 GLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERD----AVSWNSMITGYGNN 181
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + A +LF M ++NV SW S+I G+++ GDL +A LFE+MPEK + SW M++ +
Sbjct: 182 GRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYM 241
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
G A +F M V + + S C K G ++A + + + A
Sbjct: 242 SVGNLVAARNLFELMPIHDVGTWNLMI----SGCCKAGEMDAAKEFFDRMQERNV----A 293
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
++D Y K G+++AA VF + EK+L+ W+ MI G A G +++ +K G
Sbjct: 294 SWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQG 353
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF---IEPSVKHHTVVVNLLSRVGQV 449
+PD T L I++AC G A +S+ D+ + P+++ T ++++ ++ G +
Sbjct: 354 IKPDETFALGIISACSQLGVPDTA----ESVICDFVGPSLFPNLQVVTSLIDMYAKCGNI 409
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTH 478
++A+ + +M + D + + A H
Sbjct: 410 ERAVQ-VFEMVDQKDLHCYSTVITAFANH 437
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
+LF + ++ T LI + +I+ A+ +F+ K+LH ++ +I A + + IS F
Sbjct: 388 SLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLF 447
Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQ 176
M + +++P+ + + V + L+ GR L +I + G++ + D+ +
Sbjct: 448 SEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGR 507
Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVAS 232
G A + P + + +W L++ C ++ A ELF + P N +
Sbjct: 508 AGCLEEAHSLICSMP---VAPNATVWGALLSACRVHLNVQLAEAAATELFQIEP-NNSGN 563
Query: 233 WVSLIDGFMRKG 244
+V L + + G
Sbjct: 564 YVLLFNIYADAG 575
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 230/447 (51%), Gaps = 17/447 (3%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R +H + L S + + L+S S +++ A + F K++ + +I A
Sbjct: 255 RCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARF 314
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
C++ F M V P+ + + + ++ G+ H LIV+ D V
Sbjct: 315 GFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVN 374
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY + G A K+FD E +K WN ++ G ++ +V+
Sbjct: 375 NALLSMYCKFGTLNPAEKLFDGVHEWSKES----WNTMVFGYVHCYIIKNSVD------- 423
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V+ SLID + + G+L A ++F + ++ VV+W +I+ ++ +G +A+ +F +M
Sbjct: 424 EDVSIANSLIDMYGKGGNLSIAWKMFCR-TQRDVVTWNTLISSYTHSGHYAEAITLFDEM 482
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ + N T+V LSAC + +LE G VH YI F L ++GTALVDMYAKCG +
Sbjct: 483 ISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQL 542
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E + +F KEKD+++W MI G +HG A++ F++M S +P+ FL++L+AC
Sbjct: 543 EQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSAC 602
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
++G V FD M++ Y I+P++KH + +LL R G + +A + + MP PD +
Sbjct: 603 THAGYVDEGKQLFDRMQY-YSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDGGV 661
Query: 468 WGALFCACRTHKDTKI----AKIALQS 490
WG L AC+ H + +I AK A++S
Sbjct: 662 WGTLLSACKIHNEIEIGIRVAKCAIES 688
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 140/604 (23%), Positives = 239/604 (39%), Gaps = 120/604 (19%)
Query: 4 HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQ-LRQIHAQIIL----HN 58
H+F RL + + S+ S+N HI S + + T Q L + HA II +N
Sbjct: 9 HLFRRLFP-----SPFQISYHSSSNYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANN 63
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
+F SS++ + S H S +FD K+ ++N +I+ N ++ ++
Sbjct: 64 VFISSKLISLYASFRKPHSST----YVFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYI 119
Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQL 177
M + PN+ T P + + A L L G+ +H L+ KSG+ ++ V MY +
Sbjct: 120 QMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKC 179
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLING----------------------------- 208
G A +FDE ++ V+ W L+ G
Sbjct: 180 GVMEDASLMFDEIVVRD----VVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNS 235
Query: 209 ---------CSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQ 255
C +G + L G+ K + SL+ + + G++++A F Q
Sbjct: 236 RTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQ 295
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQM----------------LDAG-------- 291
+ +K V SWT++I ++ G + L +F+ M L G
Sbjct: 296 VVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREG 355
Query: 292 -------VRAN---DFTVVSA-LSACAKVGALEAGVR--------------------VHN 320
VR N D TV +A LS K G L + VH
Sbjct: 356 KAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHC 415
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
YI N +I +L+DMY K GN+ A +F T ++D++TW +I G Y +
Sbjct: 416 YIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRT-QRDVVTWNTLISSYTHSGHYAE 474
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI F +M+ P+ + +L+AC + ++ ++ F E +V T +V
Sbjct: 475 AITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGF-ELNVSLGTALV 533
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500
++ ++ GQ++++ N M E D + W + H D A Q N+ P
Sbjct: 534 DMYAKCGQLEQSRELFNSMKE-KDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVK-PN 591
Query: 501 AMSY 504
A+++
Sbjct: 592 AITF 595
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 37/418 (8%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A +FD +++ + LI G A F M+ SV PN +T + +
Sbjct: 185 ARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAG 244
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+ LL LGR +H IV+SG G+ SV
Sbjct: 245 QMGLLGLGRTVHQCIVESG------------------GRM-----------------SVN 269
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
L N L++ K G + A E+F MP K+V SW S++ + + GDL+ A +LF+++P +
Sbjct: 270 LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRN 329
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW+ M+ +S ++A+ +F M+ AGV D T+VS LSACA++ +L+ G +++
Sbjct: 330 VVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYD 389
Query: 321 -YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI + L + A +DM+AKCG++ AAS +F ++K++++W MI +HG+ E
Sbjct: 390 TYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPE 449
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ F++ +G PD ++ +L+AC + G V F M+ Y IEP +H+ +
Sbjct: 450 EALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACM 509
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
++LL +VG + +A MP D WGAL ACR H + +I K A L+ S
Sbjct: 510 IDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPS 567
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALS 304
L A +LF++M ++ VVSWT +I+G+++ G ++A +F +M+ A V N+ T+V+A S
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAAS 241
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A ++G L G VH I + + + ALVDM+ KCG + AA VF KD+ +
Sbjct: 242 AAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYS 301
Query: 365 WTAMIWGLAIHGRYE-------------------------------QAIQYFKKMMYSGT 393
WT+M+ A G E +AI+ F M+ +G
Sbjct: 302 WTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
EP +++L+AC + + +D+ + +E + +++ ++ G V A
Sbjct: 362 EPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAAS 421
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIA 484
+ M E + V W + A H + A
Sbjct: 422 RLFSNM-EDKNVVSWNTMIMAHGLHGQPEEA 451
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
M+ GF + G+ AL +F ++L + + T+V A+ A A + I C
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA------IHCVA 156
Query: 327 F-----GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
F G G ALV MY + A +F E ++D+++WT +I G A G ++A
Sbjct: 157 FKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEA 216
Query: 382 IQYFKKMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ F +M+ + + P+ +A +A G + L + + SV +V
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCI-VESGGRMSVNLENALV 275
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
++ + G V A + MP D W ++ A
Sbjct: 276 DMFGKCGCVAAAKEVFDGMP-IKDVYSWTSMVSA 308
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T ++S+ + ++ A +F +N+ ++ ++ + + I F M+ V
Sbjct: 303 TSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
P T V + A L L +G L+ IV VE + DM+ + G A +
Sbjct: 363 PIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASR 422
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDG 239
+F +KN V+ WN +I G +A+ LF G++P + A+++ ++
Sbjct: 423 LFSNMEDKN----VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDE--ATYIGVLSA 476
Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
G + + F++M E + MI+ + G ++A + M V A
Sbjct: 477 CSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSM---PVGA 533
Query: 295 NDFTVVSALSACAKVGALEAG 315
++ + L+AC G +E G
Sbjct: 534 DEAGWGALLNACRMHGNVEIG 554
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 214/449 (47%), Gaps = 43/449 (9%)
Query: 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
L + + T L+S+ + S D+A +FD + L + R + I+ F
Sbjct: 41 LHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFG 100
Query: 119 FMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M+ V P+ + + + + G+ +H L+V SG+ D FV L +Y
Sbjct: 101 DMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVY 160
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
+ G+ + +VFD+ MP ++ +W
Sbjct: 161 GESGELPVSRRVFDD-----------------------------------MPSRSTITWN 185
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD---AG 291
+++ + R G + A E+F MP + VVSW ++ G+ G +AL +F QM+
Sbjct: 186 AMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCA 245
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V N T+ + L ACA G LE G+ VH YI N G + L+DMY KCG+I+ A
Sbjct: 246 VHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNAL 305
Query: 352 LVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + ++KDL +WT +I GLA+HGR A++ F M +G PD + +L AC +
Sbjct: 306 QVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHG 365
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V L +F SM + I P ++H+ +++LL R+G++ +A + I MP P+ VIWGA
Sbjct: 366 GLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGA 425
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
AC+ H + ++ KIA + L+ P
Sbjct: 426 FLSACKVHGNMELGKIAAEELTRLDPDDP 454
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 212/411 (51%), Gaps = 12/411 (2%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
I A +FD +N+ +N +I +N H IS F+ M N +++ V
Sbjct: 249 IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM----PEKNSISWTTVING 304
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+ L R L + V + + YVQ + A ++F++ ++
Sbjct: 305 YVRMGKLDEARQLLNQMPYRNVA----AQTAMISGYVQNKRMDDARQIFNQISIRD---- 356
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V+ WN +I G S+ G + +A+ LF M KK++ SW +++ + + G + A ++FE+M E
Sbjct: 357 VVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKE 416
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
K +VSW ++I+G +QNG AL F M G + + T LS+CA + AL+ G ++
Sbjct: 417 KNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQL 476
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H + + + + AL+ MYAKCG+I +A L+F + D+++W ++I A++G
Sbjct: 477 HQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNG 536
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+A++ F KM G PD F+ IL+AC + G + L F M Y IEP +H+
Sbjct: 537 REALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYAC 596
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+V+LL R G++++A + M + IWGAL ACR H + ++AK A +
Sbjct: 597 MVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAE 647
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 189/405 (46%), Gaps = 33/405 (8%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-ID 80
+HK N +T +IS + RQ+ + N+ ++ + +A LH ++
Sbjct: 42 THK--NTVTHNSMISAFAKNGRISDARQLFDGMPQRNI-----VSWNSMIAAYLHNDRVE 94
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
A +FD ++L+ + ++I N + F L + N + + A
Sbjct: 95 EARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNL---LPYKWNPVCCNAMVAGYA 151
Query: 141 SLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
R L + K V +++ + Y + G+ R + F+E E++ V
Sbjct: 152 KNRQFDEARRLFDAMPAKDLVSWNSML-----TGYTRNGEMRLGLQFFEEMAERD----V 202
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
+ WN++++G ++G L + E F +P N SWV+++ GF R G + +A LF+QMP +
Sbjct: 203 VSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR 262
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VV+W AMI + QN ++A+++F +M + N + + ++ ++G L+ ++
Sbjct: 263 NVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISWTTVINGYVRMGKLDEARQLL 318
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
N + + A TA++ Y + ++ A +F + +D++ W MI G + GR +
Sbjct: 319 NQMPYRNV----AAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMD 374
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
+A+ FK+M+ + D + ++ + GQ+ A+ F+ M+
Sbjct: 375 EALHLFKQMV----KKDIVSWNTMVASYAQVGQMDAAIKIFEEMK 415
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 151/334 (45%), Gaps = 45/334 (13%)
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKT---RGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
+KS E+ ++V H + QLGK+ A KVF KN + N +I+ +K
Sbjct: 5 LKSVGEHGSYVFRHNLKI-TQLGKSGQIDEAIKVFQHMTHKN----TVTHNSMISAFAKN 59
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
G + A +LF MP++N+ SW S+I ++ +++A +LF++MP + + SWT MI ++
Sbjct: 60 GRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYT 119
Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+NGE KA +F + + N + ++ AK + R+ + + D
Sbjct: 120 RNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDL----V 172
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
+++ Y + G + F E E+D+++W M+ G G + ++F+K+
Sbjct: 173 SWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI---- 228
Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSM-----------------------RFDYFI 429
P+ ++ +L G++ A FD M F+
Sbjct: 229 PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 288
Query: 430 EPSVKHH---TVVVNLLSRVGQVDKALNFINKMP 460
E K+ T V+N R+G++D+A +N+MP
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP 322
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
+++S + +D A+ IF+ KN+ +N LI GL +N + + F+ M +P+
Sbjct: 394 MVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPD 453
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
+ T+ S A L+ L +G+ LH L++KSG D FV L MY + G A +F
Sbjct: 454 QSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFK 513
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
+ + V+ WN LI + G R+A++LF M + VA ++V ++ G
Sbjct: 514 DIDHFD----VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVG 569
Query: 245 DLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+ + +LF+ M + + + M++ + G E+A + M + AN
Sbjct: 570 LIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM---KINANAGIW 626
Query: 300 VSALSACAKVGALE 313
+ L AC G LE
Sbjct: 627 GALLGACRIHGNLE 640
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 246/503 (48%), Gaps = 44/503 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T ++ L+ S + +HA + A + + T LI + S+ ++D A +F
Sbjct: 103 NQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVF 162
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D K++ + ++ AEN + + F M + RPN T KS L
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFK 222
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G+ +H +K + D +V + L ++Y + G+ A + F+E P+ + ++ W+++I
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPK----DDLIPWSLMI 278
Query: 207 NGCSKIGYLRKAVELFGMMPKKNV---------------ASWV----------------- 234
+ ++ ++A+ELF M + +V AS V
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL 338
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D + + G+++ + +LF EK V+W +I G+ Q G+ EKAL +F
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML ++ + T S L A A + ALE G ++H+ + + +L+DMYAKCG
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGR 458
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A L F + ++D ++W A+I G +IHG +A+ F M S ++P+ F+ +L+A
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSA 518
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +G + F SM DY IEP ++H+T +V LL R GQ D+A+ I ++P P +
Sbjct: 519 CSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVM 578
Query: 467 IWGALFCACRTHKDTKIAKIALQ 489
+W AL AC HK+ + K+ Q
Sbjct: 579 VWRALLGACVIHKNLDLGKVCAQ 601
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/471 (22%), Positives = 207/471 (43%), Gaps = 46/471 (9%)
Query: 48 RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
+ +H I+ H +LFA + + + L A +FD N F L +G
Sbjct: 23 KSLHCHILKHGASLDLFAQNILLNTYVHFGFLED----ASKLFDEMPLTNTVSFVTLAQG 78
Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
+ + FQ + + R N+ + + K + S+ L +H + K G + D
Sbjct: 79 FSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQAD 138
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLW----- 202
AFV L D Y G A +VFD K+ +S+LL+
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRI 198
Query: 203 ----------NVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKK 248
+ + C+ + + + G K +++ ++L++ + + G++ +
Sbjct: 199 MGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAE 258
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACA 307
A + FE+MP+ ++ W+ MI+ ++Q+ ++++AL +F +M + V N+FT S L ACA
Sbjct: 259 AQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACA 318
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ L G ++H+ + + AL+D+YAKCG IE + +F + EK+ + W
Sbjct: 319 SLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNT 378
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+I G G E+A+ F M+ +P + ++L A ++
Sbjct: 379 IIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTM 438
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ + SV ++ ++++ ++ G++D A +KM + D V W AL C H
Sbjct: 439 YNKDSVVANS-LIDMYAKCGRIDDARLTFDKM-DKQDEVSWNALICGYSIH 487
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 133/298 (44%), Gaps = 40/298 (13%)
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP---------------- 191
G+ LHC I+K G D F + L + YV G A K+FDE P
Sbjct: 22 GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81
Query: 192 -------------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
E N+ L +L++ L ++ + + +
Sbjct: 82 SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141
Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+LID + G++ A ++F+ + K +VSWT M+ +++N E +L +F QM G
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAA 350
R N+FT+ +AL +C + A + G VH C D L +G AL+++Y K G I A
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY--VGIALLELYTKSGEIAEA 259
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTAC 407
F E + DL+ W+ MI A + ++A++ F +M S P+ F ++L AC
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 125/263 (47%), Gaps = 7/263 (2%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L++ ++ G L+ A +LF++MP VS+ + GFS++ + ++A + ++ G N
Sbjct: 44 LLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVN 103
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
F + L + + + VH Y+ +GTAL+D Y+ CGN++AA VF
Sbjct: 104 QFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFD 163
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD+++WT M+ A + +E ++ F +M G P+ A L +C K+
Sbjct: 164 GIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKV 223
Query: 416 ALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+ +++ Y + V ++ L ++ G++ +A F +MP+ D + W +
Sbjct: 224 GKSVHGCALKVCYDRDLYVG--IALLELYTKSGEIAEAQQFFEEMPKD-DLIPWSLMI-- 278
Query: 475 CRTHKDTKIAKIALQSSCSLNLS 497
+ + +K AL+ C + S
Sbjct: 279 -SRYAQSDKSKEALELFCRMRQS 300
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 126/273 (46%), Gaps = 13/273 (4%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
+SS NN T ++ S QIH+ ++ L ++ ++ L+ + I
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEI 358
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
+ ++ +F T KN +N +I G + + ++ F ML L ++P +TY V ++
Sbjct: 359 ENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRAS 418
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
ASL L GR +H L +K+ D+ V L DMY + G+ A FD+ ++++
Sbjct: 419 ASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVS-- 476
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
WN LI G S G +A+ LF MM K N ++V ++ G L K F+
Sbjct: 477 --WNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKS 534
Query: 256 M-----PEKGVVSWTAMINGFSQNGEAEKALAM 283
M E + +T M+ ++G+ ++A+ +
Sbjct: 535 MLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKL 567
>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial; Flags: Precursor
gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 240/503 (47%), Gaps = 43/503 (8%)
Query: 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
T + L S + + +H+ I+ +++ + LI++ S+ S+D A ++F+
Sbjct: 150 TSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILC 209
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
K++ ++ ++ EN +F+ + M PN T+ K+ L +G+
Sbjct: 210 KDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H I+K+ D V V L +Y QLG AFKVF+E P+ + V+ W+ +I +
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKND----VVPWSFMIARFCQ 325
Query: 212 IGYLRKAVELFGMM------PKKNVASWV------------------------------- 234
G+ +AV+LF M P + S +
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385
Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+LID + + + A +LF ++ K VSW +I G+ GE KA +MF + L V
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQV 445
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ T SAL ACA + +++ GV+VH + K A+ +L+DMYAKCG+I+ A
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQS 505
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF E + D+ +W A+I G + HG QA++ M +P+G FL +L+ C +G
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGL 565
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ F+SM D+ IEP ++H+T +V LL R GQ+DKA+ I +P P +IW A+
Sbjct: 566 IDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625
Query: 473 CACRTHKDTKIAKIALQSSCSLN 495
A + + A+ + + +N
Sbjct: 626 SASMNQNNEEFARRSAEEILKIN 648
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 109/242 (45%), Gaps = 11/242 (4%)
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L++ +++ G K A LF++MPE+ VS+ + G++ + + ++ ++ G N
Sbjct: 90 LLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELN 145
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
S L + E +H+ I + +G AL++ Y+ CG++++A VF
Sbjct: 146 PHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFE 205
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
KD++ W ++ +G +E +++ M +G P+ F L A G
Sbjct: 206 GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDF 265
Query: 416 ALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG---AL 471
A ++ Y ++P V ++ L +++G + A N+MP+ D V W A
Sbjct: 266 AKGVHGQILKTCYVLDPRVG--VGLLQLYTQLGDMSDAFKVFNEMPKN-DVVPWSFMIAR 322
Query: 472 FC 473
FC
Sbjct: 323 FC 324
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 136/360 (37%), Gaps = 74/360 (20%)
Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
I H RL +R NR+ S A+L L S + L + Y A +R
Sbjct: 7 IIHVAQTRRLMIRCNRIRQCGFSVKTAALDLESSDSIIPGLDSHA---YGAMLR-----R 58
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
+Q A + + +K + N+L+N K G+ + A+ LF MP++N S+
Sbjct: 59 CIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSF 118
Query: 234 VSLIDGFMRK------GDLKKAG------------ELFEQMPEKGVVSW----------- 264
V+L G+ + L + G +LF + + + W
Sbjct: 119 VTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYD 178
Query: 265 ------TAMINGFS-------------------------------QNGEAEKALAMFFQM 287
A+IN +S +NG E +L + M
Sbjct: 179 SNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCM 238
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
AG N++T +AL A +GA + VH I + L +G L+ +Y + G++
Sbjct: 239 RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDM 298
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
A VF E + D++ W+ MI +G +A+ F +M + P+ +IL C
Sbjct: 299 SDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 213/450 (47%), Gaps = 53/450 (11%)
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD KNL + ++I A+N + I F M +RPN Y + +S S
Sbjct: 144 VFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSF 203
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
L LG+ +H ++++ + + V + +MYV+ G GA VFD +N + W
Sbjct: 204 LELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQN----AVTWTG 259
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVA-----------------SW-------------- 233
L+ G ++ L A+ELF M + V W
Sbjct: 260 LMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLG 319
Query: 234 --------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
L+D +++ GD++ A F ++ E VSW+A+I+GFSQ+G E + +F
Sbjct: 320 AESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFT 379
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-----TALVDM 340
+ GV N F S ACA L G + H D +G + +A+V M
Sbjct: 380 SLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHG-----DAIKRGLVSYLYGESAMVTM 434
Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
Y+KCG ++ A F E D + WTA+I G A HG +A+ +F++M G P+ F
Sbjct: 435 YSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTF 494
Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
+A+LTAC +SG V A + SM DY ++P++ H+ +++ SR G + +AL IN+MP
Sbjct: 495 IAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMP 554
Query: 461 ETPDFVIWGALFCACRTHKDTKIAKIALQS 490
PD + W +L C H D K+ KIA ++
Sbjct: 555 FEPDAMSWKSLLGGCWAHCDLKLGKIAAEN 584
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 160/370 (43%), Gaps = 47/370 (12%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+QIH+ +I L A+ + T + + ++ A +FD +N + L+ G +
Sbjct: 208 KQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQA 267
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M V + + V K L +GR +H IVK G E + V
Sbjct: 268 KKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVG 327
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
L D YV+ G A++ F E N + W+ LI+G S+ G L +++F
Sbjct: 328 TPLVDFYVKCGDIESAYRSFGRISEPND----VSWSALISGFSQSGRLEDCIKIFTSLRS 383
Query: 223 ------------------------------GMMPKKNVASWV----SLIDGFMRKGDLKK 248
G K+ + S++ +++ + + G L
Sbjct: 384 EGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDY 443
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A FE + E V+WTA+I+G++ +G A +AL F +M GVR N T ++ L+AC+
Sbjct: 444 ARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSH 503
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTW 365
G + + +S D+G+K I ++D Y++ G + EA L+ E D ++W
Sbjct: 504 SGLVAEAKQYLGSMS-RDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSW 562
Query: 366 TAMIWGLAIH 375
+++ G H
Sbjct: 563 KSLLGGCWAH 572
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 29/320 (9%)
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
+HL + Q GK + A E + + S + + L C K+ L + + +
Sbjct: 57 LHLVSLSKQ-GKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115
Query: 228 --KNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
KN + + L+ + G ++F++M K +VSW +I+ +++NGE EKA+ +
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175
Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
F M +G+R N +S L +C LE G ++H+++ + TA+ +MY +
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVR 235
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG +E A LVF ++ +TWT ++ G + E A++ F +M G E D VF +
Sbjct: 236 CGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIV 295
Query: 404 LTAC-----WYSGQ------VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
L C W G+ VKL E V T +V+ + G ++ A
Sbjct: 296 LKVCCGLEDWDMGRQIHSHIVKLG------------AESEVSVGTPLVDFYVKCGDIESA 343
Query: 453 LNFINKMPETPDFVIWGALF 472
++ E P+ V W AL
Sbjct: 344 YRSFGRISE-PNDVSWSALI 362
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 40/278 (14%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
RL I T+++S N+ T + + + Q H I L + +
Sbjct: 370 RLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGES 429
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
+++ S +DYA F+ + + +I G A + + + F M VRP
Sbjct: 430 AMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRP 489
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N +T+ +A L+ S H +V +Y LG + V
Sbjct: 490 NAVTF------IAVLTACS-----HSGLVAEAKQY--------------LGSMSRDYGV- 523
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL 246
++ ++ +I+ S+ G L++A+EL MP + + SW SL+ G DL
Sbjct: 524 --------KPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDL 575
Query: 247 K----KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
K A LF P + + N +S G+ E+A
Sbjct: 576 KLGKIAAENLFRLDP-GDTAGYILLFNLYSAFGKWEEA 612
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 144/486 (29%), Positives = 241/486 (49%), Gaps = 49/486 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I+S S+ K+ RQ+ ++ N+ + + L+S ++ I A ++F+ +N
Sbjct: 54 IVSGYFSNGLPKEARQLFDEMSERNVVSWN----GLVSGYIKNRMIVEARNVFELMPERN 109
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+ + +++G + S F R+ R N +++ + + + R L+
Sbjct: 110 VVSWTAMVKGYMQEGMVGEAESLF---WRMPER-NEVSWTVMFGGLIDDGRIDKARKLYD 165
Query: 154 LI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
++ VK D ++ + G+ A +FDE E+N V+ W +I G +
Sbjct: 166 MMPVK-----DVVASTNMIGGLCREGRVDEARLIFDEMRERN----VVTWTTMITGYRQN 216
Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
+ A +LF +MP+K SW S++ G+ G ++ A E FE MP K V++ AMI GF
Sbjct: 217 NRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFG 276
Query: 273 QNGEAEKA-------------------------------LAMFFQMLDAGVRANDFTVVS 301
+ GE KA L +F QM GVR + +++S
Sbjct: 277 EVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLIS 336
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
LS CA + +L+ G +VH ++ F + + L+ MY KCG + A LVF KD
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKD 396
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
++ W ++I G A HG E+A++ F +M SGT P+ +AILTAC Y+G+++ L F+
Sbjct: 397 IIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFE 456
Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
SM + + P+V+H++ V++L R GQVDKA+ I M PD +WGAL AC+TH
Sbjct: 457 SMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRL 516
Query: 482 KIAKIA 487
+A++A
Sbjct: 517 DLAEVA 522
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 22/299 (7%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
++GK A K FD K ++ WN +++G G ++A +LF M ++NV SW
Sbjct: 29 RIGKINEARKFFDSLQFK----AIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNG 84
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
L+ G+++ + +A +FE MPE+ VVSWTAM+ G+ Q G +A ++F++M + N
Sbjct: 85 LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPE----RN 140
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
+ + G ++ ++++ + D T ++ + G ++ A L+F
Sbjct: 141 EVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV----VASTNMIGGLCREGRVDEARLIFD 196
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
E +E++++TWT MI G + R + A + F+ M E + ++L SG+++
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIED 252
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
A FF+ M ++P + + ++V VG++ KA + M E D W + A
Sbjct: 253 AEEFFEVMP----MKPVIACNAMIVG-FGEVGEISKARRVFDLM-EDRDNATWRGMIKA 305
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/425 (20%), Positives = 176/425 (41%), Gaps = 67/425 (15%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N ++ T + + + R+++ + + ++ AS T +I +D A IF
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVAS----TNMIGGLCREGRVDEARLIF 195
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA---SLS 143
D +N+ + +I G +N+ F M P + + S + S
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEVSWTSMLLGYTLSGR 249
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
+ + +K + +A + + ++G+ A +VFD +++ + W
Sbjct: 250 IEDAEEFFEVMPMKPVIACNAMIV-----GFGEVGEISKARRVFDLMEDRDNA----TWR 300
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSLIDG---------- 239
+I + G+ +A++LF M K+ V A+ SL G
Sbjct: 301 GMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360
Query: 240 ---------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
+++ G+L KA +F++ K ++ W ++I+G++ +G E+AL +F
Sbjct: 361 QFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIF 420
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA 342
+M +G N T+++ L+AC+ G LE G+ + + + F + + + VDM
Sbjct: 421 HEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESME-SKFCVTPTVEHYSCTVDMLG 479
Query: 343 KCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
+ G ++ A L+ T + D W A++ H R + A KK+ + EPD
Sbjct: 480 RAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEN--EPDNAGTY 537
Query: 402 AILTA 406
+L++
Sbjct: 538 VLLSS 542
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 225/463 (48%), Gaps = 40/463 (8%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
K I H+I + + R++ ++ + NL++ +++ + ++ A
Sbjct: 94 KRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYS----WNHMLAGYAKLGDVNNAR 149
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+FD K++ +N ++ A+ F I + RL + N ++ V L
Sbjct: 150 KLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLK 209
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L L + +H ++ +G + + + D Y
Sbjct: 210 ELQLAKQVHGQVLVAGFLSNLVLSSSIVDAY----------------------------- 240
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
SK G +R A LF M K++ +W +++ G+ + GD+ A ELF QMPEK VS
Sbjct: 241 ------SKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVS 294
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
W+A+I+G+++N +AL F +M+ G+ +T S L ACA + AL+ G +VH Y+
Sbjct: 295 WSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLI 354
Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAI 382
F + ++L+DMY+KCG +EA+ VF K D++ W MI LA +G E+A+
Sbjct: 355 RTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAM 414
Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
Q F M+ SG +PD F+ IL+AC +SG V+ L FF +M +D+ + P +H+ +++L
Sbjct: 415 QMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDL 474
Query: 443 LSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
L R G + +N + M PD +W AL CR H + ++ +
Sbjct: 475 LGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGR 517
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+Q P+ + + S G +AL+ ++ G+R V L CAK +
Sbjct: 20 KQRPDSTGLCIAQSLLDLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFK 79
Query: 314 AGVRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G VH ++ F I L+ MY +CG A VF + ++L +W M+ G
Sbjct: 80 GGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGY 139
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
A G A + F +MM T+ LA ++ + L +F
Sbjct: 140 AKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDF 186
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/508 (27%), Positives = 244/508 (48%), Gaps = 44/508 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+N T +I + ++H ++I L I LI + I+ A +F
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
++L +N +I G +S F M ++ +R + + + + L
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLR 244
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G+ +HC +++S +E D V+ L DMY + G+ A ++FD+ +K S++ WN +I
Sbjct: 245 NGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDK----SIVAWNAMI 300
Query: 207 NGCS-------KIGYLRKAVE----------LFGMMPK----------KNVASW------ 233
G S Y+RK E + ++P K+V +
Sbjct: 301 GGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGF 360
Query: 234 -------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
+L+D + G LK A LF QM E+ ++SW AMI +++NGE KA+ +F
Sbjct: 361 LPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQD 420
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
+ + ++ + T+ S L A A++ +L ++H Y++ + ++V MY KCGN
Sbjct: 421 LCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGN 480
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
+ A +F KD+++W +I AIHG +I+ F +M G EP+G+ F+++L +
Sbjct: 481 LLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLS 540
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +G V +F+SM+ DY I P ++H+ +++L+ R G +D A NFI +MP P
Sbjct: 541 CSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTAR 600
Query: 467 IWGALFCACRTHKDTKIAKIALQSSCSL 494
IWG+L A R D ++A+IA + SL
Sbjct: 601 IWGSLLTASRNKGDVELAEIAAEHILSL 628
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 185/380 (48%), Gaps = 44/380 (11%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T+ +SS + AL +F++ + I+NV+IRG +N F + + M VR
Sbjct: 64 TRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVR 123
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+ TYPFV K+ L L+ G +H ++KSG++ D ++ L MY ++G A V
Sbjct: 124 GDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMV 183
Query: 187 FDETPEKNKSESVLLWNVLING-----------------------------------CSK 211
F E P ++ ++ WN +I+G CS
Sbjct: 184 FREMPVRD----LVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSL 239
Query: 212 IGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G+LR E+ M + +V SL+D + + G + A LF+Q+ +K +V+W AM
Sbjct: 240 EGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAM 299
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCND 326
I G+S N ++ ++ A +M + G D+ T+++ L CA++ A+ G VH + N
Sbjct: 300 IGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNG 359
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
F + TALVDMY +CG ++ A +FG+ E++L++W AMI +G +A+ F+
Sbjct: 360 FLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQ 419
Query: 387 KMMYSGTEPDGTVFLAILTA 406
+ +PD T +IL A
Sbjct: 420 DLCNKTLKPDATTIASILPA 439
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 47/370 (12%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------- 226
YV+ G + A +F E + +WNV+I G G AV+ + M
Sbjct: 70 YVERGYMKNALDLF----ENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGD 125
Query: 227 ------------------------KKNVASWV--------SLIDGFMRKGDLKKAGELFE 254
K + S + SLI + + G ++ A +F
Sbjct: 126 NFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFR 185
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
+MP + +VSW +MI+G+ G+ ++L+ F +M +G++ + F+V+ L AC+ G L
Sbjct: 186 EMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRN 245
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
G +H + + L + T+LVDMYAKCG ++ A +F + +K ++ W AMI G ++
Sbjct: 246 GKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSL 305
Query: 375 HGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+ + ++ Y +KM G PD + +L C + L + + F+ P +
Sbjct: 306 NAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL-PHL 364
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493
T +V++ G++ A +M E + + W A+ + + + + A Q C+
Sbjct: 365 VLETALVDMYGECGKLKPAECLFGQMNER-NLISWNAMIASYTKNGENRKAMTLFQDLCN 423
Query: 494 LNLSIPQAMS 503
L P A +
Sbjct: 424 KTLK-PDATT 432
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 2/245 (0%)
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
++N S + ++ +G +K A +LFE M + W MI GF NG A+ + +
Sbjct: 57 ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
M GVR ++FT + AC + L G RVH + + L IG +L+ MYAK G
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
IE+A +VF E +DL++W +MI G G +++ F++M SG + D + IL A
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGA 236
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C G ++ M +E V T +V++ ++ G++D A +++ + V
Sbjct: 237 CSLEGFLRNGKEIHCQM-MRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKS-IV 294
Query: 467 IWGAL 471
W A+
Sbjct: 295 AWNAM 299
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 236/479 (49%), Gaps = 47/479 (9%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC---ISHFVFMLRL-SVRPNRLTYPF 134
+D ALS+F +++ + LI G ++N C + F M+R PN T+
Sbjct: 180 MDDALSVFVKMPRRDVVAWTTLISGFSKNG--DGCGKALEIFRLMMRSGETTPNEFTFDC 237
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY-------------------- 174
V ++ L +LS+GR +H L++K G+EYD + L + Y
Sbjct: 238 VVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPC 297
Query: 175 -----------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
+ +G+ A VF+ E N + +N++I G + G + + LF
Sbjct: 298 LNALNSLIEGLISMGRIEDAELVFNGMTEMNP----VSYNLMIKGYAVGGQMDDSKRLFE 353
Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALA 282
MP + + S ++I + R G++ KA ELFE+ EK V+W +MI+G+ +G+ E+AL
Sbjct: 354 KMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALK 413
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
++ M ++ T + AC+ +G+L G +H ++ F +GT+L+DMY+
Sbjct: 414 LYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYS 473
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I A F ++ WTA+I G A HG +AI F +M+ G P+G F+
Sbjct: 474 KCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVG 533
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC +G V + F SM Y + P+++H+ VV+LL R G + +A FI KMP
Sbjct: 534 VLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLE 593
Query: 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM-SYCQTFMQQKGDGRTWRE 520
D V+WGAL AC D ++ + + S + P+ + SY G GR WRE
Sbjct: 594 ADGVVWGALLSACWFWMDLEVGERVAEKMFSFD---PKPISSYVILSNIYAGLGR-WRE 648
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 175/417 (41%), Gaps = 45/417 (10%)
Query: 57 HNLFASSRITTQL-ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
H S I+T + IS+ + +D A +FD + + +N +I +++ F +
Sbjct: 25 HQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALF 84
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
M R ++ + T+ V A L L G+ +HCL++KSG E V L Y
Sbjct: 85 LVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYA 144
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
+ A +VFD +N+ +LW++++ G + A+ +F MP+++V +W +
Sbjct: 145 SCFEIGEARRVFDVLVRRNE----VLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTT 200
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
LI GF + GD KAL +F M+ +G
Sbjct: 201 LISGFSKNGD------------------------------GCGKALEIFRLMMRSGETTP 230
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
N+FT + AC ++G L G VH + +IG ALV+ Y +C I+ A V
Sbjct: 231 NEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVC 290
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
L ++I GL GR E A F M TE + + ++ GQ+
Sbjct: 291 KGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM----TEMNPVSYNLMIKGYAVGGQMD 346
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ F+ M ++ ++++ SR G++DKAL + D V W ++
Sbjct: 347 DSKRLFEKMPCR-----TIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSM 398
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 227/442 (51%), Gaps = 14/442 (3%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
L+S+ + SI + FD ++ +N I G + NS Q + F M R P
Sbjct: 95 LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPT 154
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
T + + A L L G+ +H I+ + F+ L DMY + G+ A +FD
Sbjct: 155 EYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFD 214
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMR 242
+KN ++ WN++I+G +K G K + L G MP + S ++I + +
Sbjct: 215 CLTKKN----LVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQ 268
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G + +A +F + EK +V WTAM+ G+++NG E AL +F +ML + + +T+ S
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328
Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+S+CAK+ +L G VH + +AL+DMY+KCG I+ A VF +++
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
++W AMI G A +G + A++ F+ M+ +PD F+ IL+AC + ++ +FDS
Sbjct: 389 VSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDS 448
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+ + + P++ H+ +VNLL R G++++A+ I M PDF+IW L C T D
Sbjct: 449 ISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIV 508
Query: 483 IAKIALQSSCSLN--LSIPQAM 502
A++A + L+ +++P M
Sbjct: 509 NAEVAARHLFELDPTIAVPYIM 530
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 132/260 (50%), Gaps = 5/260 (1%)
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
L N L++ +K G LR A LF M K++ SW +L+ + + G ++ F++MP +
Sbjct: 59 FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VS+ I GFS N +++L +F +M G ++T+VS L+A A++ L G ++H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIH 178
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
I +F I AL DMYAKCG IE A +F +K+L++W MI G A +G+ E
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+ I +M SG PD I+ A G+V A F F E + T +
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSE-----FKEKDIVCWTAM 293
Query: 440 VNLLSRVGQVDKALNFINKM 459
+ ++ G+ + AL N+M
Sbjct: 294 MVGYAKNGREEDALLLFNEM 313
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 30/265 (11%)
Query: 23 HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
H ++ T + ++S S + +H + IL L + +++ LI S ID A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376
Query: 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
S+F+ +N+ +N +I G A+N H + + F ML+ +P+ +T+ +
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI------- 429
Query: 143 SLLSLGRGLHCLIVKSGVEY-DAFVRV--------HLADMYVQLGKTRGAFKVFDETPEK 193
L LHC ++ G EY D+ H A M LG+T +
Sbjct: 430 ----LSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
L+W+ L++ CS G + A LF + P V ++ L + + G K
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDV 544
Query: 250 GELFEQMPEKGV-----VSWTAMIN 269
+ M K V SW + N
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDN 569
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/473 (30%), Positives = 224/473 (47%), Gaps = 46/473 (9%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIF----DHFT 90
SL+H Q+R H + +F ++ + L+++ + +D A +F D
Sbjct: 154 SLVHMYIKCNQIRDAHR--VFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
NL +N +I G + + + F+ M P+ T V +V L L +G
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H ++K G+ D V L DMY + T +VFD+
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQ--------------------- 310
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTA 266
M +V S + I G R G ++ + LF Q+ ++G VVSWT+
Sbjct: 311 --------------MDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI SQNG +AL +F +M AGV+ N T+ L AC + AL G H +
Sbjct: 357 MIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+G+AL+DMYAKCG I+A+ + F K+L+ W A+I G A+HG+ ++A++ F
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M SG +PD F +L+AC SG + +F+SM Y IE V+H+ +V LLSR
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRA 536
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
G++++A I +MP PD +WGAL +CR H + + ++A + L S P
Sbjct: 537 GKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 186/417 (44%), Gaps = 36/417 (8%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
+++ T + L ++ S Q RQ HA I+ LF + + T+L+S + + A +
Sbjct: 12 DSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVL 71
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D N+ F+ LI ++ F +S F ML + P+ P K+ A LS L
Sbjct: 72 DLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALK 131
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
R +H + SG + D+FV+ L MY++ + R A +VFD E + V+ W+ L+
Sbjct: 132 PARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPD----VVSWSALV 187
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
++ G + +A LF M V + ++SW
Sbjct: 188 AAYARQGCVDEAKRLFSEMGDSGV---------------------------QPNLISWNG 220
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI GF+ +G +A+ MF M G + T+ S L A + L G+ +H Y+
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
+ +AL+DMY KC S VF + D+ + A I+GL+ +G+ E +++ F+
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
++ G E + + +++ C +G+ AL F M+ VK ++V + L
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQI-----AGVKPNSVTIPCL 392
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
+ + +PE V S++ +I FS+ + AL+ F QML G+ ++ + SA+ ACA + A
Sbjct: 70 VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129
Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
L+ +VH S + F + ++LV MY KC I A VF E D+++W+A++
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189
Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
A G ++A + F +M SG +P+ + ++ +SG A+ F M F EP
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF-EP 248
Query: 432 SVKHHTVVVNLLSRVGQVD 450
T + ++L VG ++
Sbjct: 249 D---GTTISSVLPAVGDLE 264
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 26/307 (8%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S+ + +I + + T ++ Q+ Q+ ++ + + L + + S+ +
Sbjct: 283 SDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQL 342
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
D N+ + +I ++N + F M V+PN +T P + + +++ L
Sbjct: 343 KDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAAL 402
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G+ HC ++ G+ D +V L DMY + G+ + + FD P KN ++ WN +
Sbjct: 403 MHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN----LVCWNAV 458
Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
I G + G ++A+E+F +M K ++ S+ ++ + G ++ F M
Sbjct: 459 IAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYG 518
Query: 258 -EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
E V + M+ S+ G+ E+A AM +M V + AC GAL +
Sbjct: 519 IEARVEHYACMVTLLSRAGKLEQAYAMIRRM---PVNPD---------ACV-WGALLSSC 565
Query: 317 RVHNYIS 323
RVHN +S
Sbjct: 566 RVHNNVS 572
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 223/457 (48%), Gaps = 44/457 (9%)
Query: 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
N K+ ++ H + + ++ + ++ S S K + A +FD ++ I
Sbjct: 284 NQLKESQRAHGRAVK---LGTTILEPDIVCSYSASKELWDACKLFDEVPNWDVVSATATI 340
Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
A H + I F ML L+++PN+ ++ V S +L L+ GR LH +K G+E
Sbjct: 341 GCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQLHACAIKMGLE 400
Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
+ FV + D Y +L A K F++T E N
Sbjct: 401 SNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPN--------------------------- 433
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
V S+ +LI G+++K A LF MPE+ VVSW AMI+G+SQ G E+A+
Sbjct: 434 --------VVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAV 485
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
+F ML G N+ T A+SA A + AL G H IG +LV Y
Sbjct: 486 NLFVVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFY 545
Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
AKCG++E + LVF +K++++W A+I G A HGR +AI +F+KM +G P+ L
Sbjct: 546 AKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLL 605
Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVGQVDKALNFINK 458
+L AC +SG V ++F+ R + EP + +HH +V+LLSR G+ +A F+++
Sbjct: 606 GLLLACNHSGLVDKGYSYFNKARVE---EPGLLTPEHHACMVDLLSRSGRFKEAEKFLHE 662
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+P P W AL CR H + ++ ++A + +L+
Sbjct: 663 LPFVPGIGFWKALLGGCRIHSNMELGELAARKILALD 699
>gi|15218490|ref|NP_172504.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213381|sp|Q9SY75.1|PPR30_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g10330
gi|4914335|gb|AAD32883.1|AC005489_21 F14N23.21 [Arabidopsis thaliana]
gi|332190445|gb|AEE28566.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 223/447 (49%), Gaps = 66/447 (14%)
Query: 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
S+ Q++QIH ++ N +SR T+ + +N LIR
Sbjct: 26 SSNQIKQIHTVLLTSNALVASRWKTKCV--------------------------YNTLIR 59
Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
+++ ++ F ML V+PN LT+P + K+ S +S G LH +K G +
Sbjct: 60 SYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQALKRGFLW 119
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D FV+ Y ++G + K+FD+ ++N C
Sbjct: 120 DPFVQTSFVRFYGEVGDLESSRKMFDD---------------ILNPC------------- 151
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
V + SL+D R G++ A E F++MP VVSWT +INGFS+ G KAL
Sbjct: 152 -------VVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALM 204
Query: 283 MFFQMLD---AGVRANDFTVVSALSACAKV--GALEAGVRVHNYISCNDFGLKGAIGTAL 337
+F +M+ A + N+ T VS LS+CA G + G ++H Y+ + L +GTAL
Sbjct: 205 VFGEMIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTAL 264
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+DMY K G++E A +F + ++K + W A+I LA +GR +QA++ F+ M S P+G
Sbjct: 265 LDMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNG 324
Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
LAILTAC S V L + F S+ +Y I P+ +H+ VV+L+ R G + A NFI
Sbjct: 325 ITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQ 384
Query: 458 KMPETPDFVIWGALFCACRTHKDTKIA 484
+P PD + GAL AC+ H++T++
Sbjct: 385 SLPFEPDASVLGALLGACKIHENTELG 411
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 125/338 (36%), Gaps = 83/338 (24%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML---RLSV 125
L+ + + +DYA F ++ + +I G ++ + F M+ R +
Sbjct: 158 LLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVI 217
Query: 126 RPNRLTYPFVSKSVASLSL--LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
PN T+ V S A+ + LG+ +H ++ + + L DMY
Sbjct: 218 TPNEATFVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMY--------- 268
Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
K G L A+ +F + K V +W ++I
Sbjct: 269 --------------------------GKAGDLEMALTIFDQIRDKKVCAWNAIISALASN 302
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G K+A E+FE M + V N T+++ L
Sbjct: 303 GRPKQALEMFEMMK-------------------------------SSYVHPNGITLLAIL 331
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTA-----LVDMYAKCG-NIEAASLVFGET 357
+ACA+ ++ G+++ + I C+++ + I T+ +VD+ + G ++AA+ +
Sbjct: 332 TACARSKLVDLGIQLFSSI-CSEYKI---IPTSEHYGCVVDLIGRAGLLVDAANFIQSLP 387
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
E D A++ IH E K+++ G +P
Sbjct: 388 FEPDASVLGALLGACKIHENTELGNTVGKQLI--GLQP 423
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 234/465 (50%), Gaps = 10/465 (2%)
Query: 48 RQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R A+++ + + +T T +IS ++ +F +N+ + +I G A
Sbjct: 215 RMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAW 274
Query: 107 NSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
N ++ + F+ M ++PN T+ ++ + A + LG H ++ + +YD +
Sbjct: 275 NGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDY 334
Query: 166 ---VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ L MY G A+ +F ++S N +ING +IG L KA LF
Sbjct: 335 DGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSC---NSMINGYIRIGQLEKAQSLF 391
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+P ++ SW S+I+G+ G + KA LF MP++ V+WT M++G QN +A
Sbjct: 392 DTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATY 451
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M GV + T L A + L+ G + H + F + +L+ MYA
Sbjct: 452 LFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYA 511
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG I A +F + +DL++W +MI G + HG +A++ F+ M+ SGT P+ FL
Sbjct: 512 KCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLG 571
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
IL+AC ++G + FD+M + I+P ++H+ +VNLL R G+V++A FI+K+P
Sbjct: 572 ILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFE 631
Query: 463 PDFVIWGALFCACRTHK-DTKIAKIALQSSCSLN-LSIPQAMSYC 505
PD IWGAL C +T +A+ A + L+ L+ P + C
Sbjct: 632 PDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLC 676
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 121/545 (22%), Positives = 227/545 (41%), Gaps = 98/545 (17%)
Query: 15 PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
P + +H ++ I+ + S ++ R + ++ + T L+S S
Sbjct: 29 PQIPLSGTHYSKLRFDDSQILECL-SQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFS 87
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
+ ID A ++F+ +N+ +N ++ G + F M +V +++
Sbjct: 88 KNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNV----VSWTS 143
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETP 191
+ +A+ + R L ++ + V V M V L G+ A +VF+E P
Sbjct: 144 LLCGLANAGRIGEARELFNVMPERNV-------VSWNSMLVGLIRSGQLEEARRVFNEMP 196
Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
K++ + WNV+I G ++ + +A LF M +NV +W S+I G+ R G++++
Sbjct: 197 VKSQ----VSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYC 252
Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVG 310
LF++MPE+ VVSWTAMI GF+ NG ++AL +F +M + ++ ND T +S ACA +G
Sbjct: 253 LFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIG 312
Query: 311 ALEAGVRVHNY--ISCNDF-GLKGAIGTALVDMYA------------------------- 342
G++ H + I+C D+ G + +L+ MY+
Sbjct: 313 FPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCN 372
Query: 343 -------KCGNIEAASLVFGETKEKDLLTWTAMI-------------------------- 369
+ G +E A +F +D ++WT+MI
Sbjct: 373 SMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVA 432
Query: 370 WGLAIHGR-----YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF---- 420
W + + G + +A F +M G P + F +L A + F
Sbjct: 433 WTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLM 492
Query: 421 -DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
FD ++ S ++++ ++ G++ A + +KM + D + W ++ H
Sbjct: 493 KTQFEFDLILQNS------LISMYAKCGEIGDAYSIFSKMI-SRDLISWNSMIMGFSHHG 545
Query: 480 DTKIA 484
T A
Sbjct: 546 LTSEA 550
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/525 (26%), Positives = 248/525 (47%), Gaps = 71/525 (13%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H+++ S + R++ ++ NLF + L+S+ + + + +F +
Sbjct: 53 HLLTAYAKSGRLARARRVFDEMPDPNLFTRN----ALLSALAHSRLVPDMERLFASMPER 108
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ +N LI G + + + +LR SVRP R+T + ++LS +LG +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------------- 195
HC +++ G AFV L DMY ++G R A +VF E K
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228
Query: 196 -----------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
+ W ++ G ++ G +A+++F M + V
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288
Query: 232 ------------------SWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+W +L+D + + ++ A +F +M + ++SWT
Sbjct: 289 GALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI G+ QN +E+A+ F +M G++ +DFT+ S +S+CA + +LE G + H +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ ALV +Y KCG+IE A +F E D ++WTA++ G A G+ ++ I F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+KM+ +G +PDG F+ +L+AC +G V+ ++FDSM+ D+ I P H+T +++L SR
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSR 528
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
G+ +A FI +MP +PD W L +CR + +I K A ++
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAEN 573
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 32/245 (13%)
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
++ L N L+ +K G L +A +F MP N+ + +L+ + LF
Sbjct: 44 QAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFA 103
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
MPE+ VS+ A+I GFS G +++ ++ +L + VR T+ + + + +
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--------------- 358
G VH + FG +G+ LVDMYAK G I A VF E +
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223
Query: 359 ----------------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
++D +TWT M+ GL +G +A+ F++M G D F +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 403 ILTAC 407
ILTAC
Sbjct: 284 ILTAC 288
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/525 (26%), Positives = 248/525 (47%), Gaps = 71/525 (13%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
H+++ S + R++ ++ NLF + L+S+ + + + +F +
Sbjct: 53 HLLTAYAKSGRLARARRVFDEMPDPNLFTRN----ALLSALAHSRLVPDMERLFASMPER 108
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+ +N LI G + + + +LR SVRP R+T + ++LS +LG +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------------- 195
HC +++ G AFV L DMY ++G R A +VF E K
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228
Query: 196 -----------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
+ W ++ G ++ G +A+++F M + V
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288
Query: 232 ------------------SWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
+W +L+D + + ++ A +F +M + ++SWT
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI G+ QN +E+A+ F +M G++ +DFT+ S +S+CA + +LE G + H +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ ALV +Y KCG+IE A +F E D ++WTA++ G A G+ ++ I F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+KM+ +G +PDG F+ +L+AC +G V+ ++FDSM+ D+ I P H+T +++L SR
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
G+ +A FI +MP +PD W L +CR + +I K A ++
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAEN 573
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 32/245 (13%)
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
++ L N L+ +K G L +A +F MP N+ + +L+ + LF
Sbjct: 44 QAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFA 103
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
MPE+ VS+ A+I GFS G +++ ++ +L + VR T+ + + + +
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--------------- 358
G VH + FG +G+ LVDMYAK G I A VF E +
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223
Query: 359 ----------------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
++D +TWT M+ GL +G +A+ F++M G D F +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 403 ILTAC 407
ILTAC
Sbjct: 284 ILTAC 288
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 227/463 (49%), Gaps = 47/463 (10%)
Query: 35 ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
+SL++S N+ + L R+IH+ I L + LI+ I A FD +
Sbjct: 284 VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSK 343
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLLS 146
+++ ++ +I G A++ + VF L R V PN++T+ + K+ + L
Sbjct: 344 RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALE 403
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H I K G E D ++ + +MY
Sbjct: 404 QGRQIHAEISKVGFESDRSLQTAIFNMY-------------------------------- 431
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+K G + +A ++F M KNV +W SL+ +++ GDL A ++F +M + VVSW
Sbjct: 432 ---AKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNL 488
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI G++Q+G+ K + M G + + T++S L AC + ALE G VH
Sbjct: 489 MIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVH--AEAVK 546
Query: 327 FGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
GL+ + T+L+ MY+KCG + A VF + +D + W AM+ G HG +A+
Sbjct: 547 LGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDL 606
Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
FK+M+ P+ F A+++AC +G V+ F M+ D+ ++P +H+ +V+LL
Sbjct: 607 FKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLG 666
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
R G++ +A FI +MP PD +W AL AC++H + ++A+ A
Sbjct: 667 RAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWA 709
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 134/547 (24%), Positives = 231/547 (42%), Gaps = 83/547 (15%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
RL AI IK N+ T II + + +H Q+ L +
Sbjct: 58 RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGN 117
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
LI+ S + +F T +++ ++ +I A N+H F M ++ P
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
NR+T+ + K+ + S+L R +H ++ SG+E D V L MY + G+ A ++F
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDG---- 239
+ E+N V+ W +I ++ L +A EL+ M + N ++VSL++
Sbjct: 238 QKMKERN----VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293
Query: 240 -------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
+ + ++ A E F++M ++ V+SW+AMI
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353
Query: 269 NGFSQNGEAEK-ALAMFFQMLD----AGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
G++Q+G +K +L FQ+L+ GV N T +S L AC+ GALE G ++H IS
Sbjct: 354 AGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413
Query: 324 CNDFGLKGAIGTALVDMYAKCGNI-------------------------------EAASL 352
F ++ TA+ +MYAKCG+I +A
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSG 411
VF E +++++W MI G A G + + M G +PD ++IL AC S
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+ L ++++ +E T ++ + S+ G+V +A +K+ D V W A+
Sbjct: 534 LERGKLVHAEAVKLG--LESDTVVATSLIGMYSKCGEVTEARTVFDKIS-NRDTVAWNAM 590
Query: 472 FCACRTH 478
H
Sbjct: 591 LAGYGQH 597
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 16/330 (4%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLID 238
AF F+ + N + + + ++ C+ L KA E+ ++ + +VA +LI
Sbjct: 163 AFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALIT 222
Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
+ + G++ A E+F++M E+ VVSWTA+I +Q+ + +A ++ +ML AG+ N T
Sbjct: 223 MYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282
Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
VS L++C AL G R+H++IS + AL+ MY KC I+ A F
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342
Query: 359 EKDLLTWTAMIWGLAIHG-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
++D+++W+AMI G A G ++ Q ++M G P+ F++IL AC G +
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGAL 402
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF- 472
+ + F E T + N+ ++ G + +A +KM E + V W +L
Sbjct: 403 EQGRQIHAEISKVGF-ESDRSLQTAIFNMYAKCGSIYEAEQVFSKM-ENKNVVAWASLLT 460
Query: 473 ----CACRTHKDTKIAKIALQSSCSLNLSI 498
C T + ++++ ++ S NL I
Sbjct: 461 MYIKCGDLTSAEKVFSEMSTRNVVSWNLMI 490
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 17/271 (6%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S+ +T I ++ S + Q+ +++ N+ A + + T I L A +
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTS----AEKV 474
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F + +N+ +N++I G A++ M +P+R+T + ++ +LS L
Sbjct: 475 FSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSAL 534
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G+ +H VK G+E D V L MY + G+ A VFD+ ++ + WN +
Sbjct: 535 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRD----TVAWNAM 590
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEK-- 259
+ G + G +AV+LF M K+ V ++ ++I R G +++ E+F M E
Sbjct: 591 LAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFR 650
Query: 260 ---GVVSWTAMINGFSQNGEAEKALAMFFQM 287
G + M++ + G ++A +M
Sbjct: 651 MKPGKQHYGCMVDLLGRAGRLQEAEEFIQRM 681
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 2/205 (0%)
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
G ++A+ + + G+ N T + CAK+ E G VH + + +G
Sbjct: 57 GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116
Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
+L++ Y+K G++ + VF +D++TW++MI A + +A F++M + E
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176
Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454
P+ FL+IL AC ++ A ++ +E V T ++ + S+ G++ A
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACE 235
Query: 455 FINKMPETPDFVIWGALFCACRTHK 479
KM E + V W A+ A H+
Sbjct: 236 IFQKMKER-NVVSWTAIIQANAQHR 259
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 229/452 (50%), Gaps = 17/452 (3%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSV 125
T ++S ++ +F +N+ + +I G N ++ + F+ M R +
Sbjct: 169 TSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADI 228
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE---YDAFVRVHLADMYVQLGKTRG 182
PN T+ ++ + A L LG+ LH ++ G++ YD + L MY +G
Sbjct: 229 TPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDY 288
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A +F++ +S N +ING +IG L KA LF MP ++ +W S+IDG++
Sbjct: 289 AHYIFNKNSNYYVVQSC---NYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLV 345
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
G++ +A LF MPEK V+WT MI+G +N +A +F +ML GVR T
Sbjct: 346 IGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAIL 405
Query: 303 LSACAKVGALEAGVRVH----NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
A V +L+ G ++H +S ND L+ +L+ MYAKCG I A +F +
Sbjct: 406 FGAAGAVASLDQGRQLHAMLTKTLSDNDLILE----NSLISMYAKCGEIRNAYRIFSQMI 461
Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
DL++W +MI G + HG +A++ F+ M+ SGT P+ FL +L+AC ++G +
Sbjct: 462 SHDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWE 521
Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR-T 477
F++M + ++P ++H+ +VNLL R G++ +A I +P + IWGAL C +
Sbjct: 522 IFNAMSDVFAVQPGLEHYICMVNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFS 581
Query: 478 HKDTKIAKIALQSSCSLN-LSIPQAMSYCQTF 508
K+ IAK A L+ L+ P + C +
Sbjct: 582 EKNADIAKRAATRILELDPLNAPAHVLLCNIY 613
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 97/391 (24%)
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
++ V Y+A + L Q G+ A K+F+E PE+N V+ W ++ G + G +
Sbjct: 39 RNAVSYNALLSGLL-----QCGRLSEAMKLFEEMPERN----VVSWTSMLCGLADAGKIC 89
Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+A LF MP +NV SW ++I G +R GDL+ A +F++ P K SW MI G+++NG
Sbjct: 90 EAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGR 149
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
E+A A+F +M D V T S +S
Sbjct: 150 MEEARALFDEMEDRNV----ITWTSMVSG------------------------------- 174
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EP 395
Y + G +E +F ++++++WTAMI G +G YE A+ F +M P
Sbjct: 175 ----YCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITP 230
Query: 396 DGTVFLAILTACW------------------------YSGQVKLAL-------NFFDSMR 424
+ F+++ AC Y G++ L F D
Sbjct: 231 NIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAH 290
Query: 425 F------DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH 478
+ +Y++ S + ++N R+G +DKA N + MP D + W ++
Sbjct: 291 YIFNKNSNYYVVQSCNY---MINGYIRIGLLDKAQNLFDTMP-VRDKITWTSMI------ 340
Query: 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
D + + +CSL L +P+ + T M
Sbjct: 341 -DGYLVIGNVSEACSLFLYMPEKDAVAWTTM 370
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 131/408 (32%), Positives = 209/408 (51%), Gaps = 36/408 (8%)
Query: 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL---------------- 154
++ ++ + M RL VRP+ T PF + ASL LL LG LH +
Sbjct: 64 RAALALLLIMPRLPVRPDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVANA 123
Query: 155 IVKSGVEYDAFVRVH--LADM--------------YVQLGKTRGAFKVFDETPEKNKSES 198
+V + + F H LAD+ + + R A +F P + +
Sbjct: 124 LVDLYAKCEEFPAAHAALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQ--- 180
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+ WN ++ G L A +F MP ++ AS + LI G+ + G ++ A ELF++MP
Sbjct: 181 -VSWNAMVVLYVSAGDLAAACRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPT 239
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
K +V+ TAMING++Q G + ALA+F + AG+ + T+V +SA +++G+ E V
Sbjct: 240 KDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWV 299
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
Y+ + TALVDM+AKCGNIE A F E D +TA+I GLA HG
Sbjct: 300 GAYVDRKKIERNEKVLTALVDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHE 359
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
A+ F++M +P F+ +LTAC ++G V+ L ++++M DY IE H+
Sbjct: 360 NLALSVFERMRAEDIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYAC 419
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKI 486
V+++L R G++++A + MP P GAL AC+T+ + +IA++
Sbjct: 420 VIDMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYDNVEIAEV 467
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 16/253 (6%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+ A +FD K+L +I G A+ + ++ F + + P+ T V +
Sbjct: 227 VQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISA 286
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
V+ + L + + + +E + V L DM+ + G A F E P +
Sbjct: 287 VSQIGSTELAGWVGAYVDRKKIERNEKVLTALVDMHAKCGNIEQALSAFREIPRPDAYP- 345
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
+ LI+G + G+ A+ +F M +++ ++V ++ G+++K E +E
Sbjct: 346 ---YTALISGLATHGHENLALSVFERMRAEDIKPHPITFVGVLTACSHAGNVEKGLEYWE 402
Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M E+ + +I+ + G E+A M Q + G + LSAC
Sbjct: 403 AMVQDYGIERHADHYACVIDMLGRAGRIEEAFEM-VQTMPMGPHPGALGAL--LSACKTY 459
Query: 310 GALEAGVRVHNYI 322
+E V N +
Sbjct: 460 DNVEIAEVVANKL 472
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 5/187 (2%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++++ + T +IS + ST+ + A + + + ++ T
Sbjct: 257 RPKVALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLT 316
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I+ ALS F + + + LI GLA + H +S F M ++P
Sbjct: 317 ALVDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKP 376
Query: 128 NRLTYPFVSKSVASLSLLSLGRGL---HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+ +T FV A ++ +GL ++ G+E A + DM + G+ AF
Sbjct: 377 HPIT--FVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYACVIDMLGRAGRIEEAF 434
Query: 185 KVFDETP 191
++ P
Sbjct: 435 EMVQTMP 441
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 234/479 (48%), Gaps = 44/479 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + L++ + + A +FD T + +N +I G EN
Sbjct: 209 REVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFEN 268
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F+ ML V+PN +T V+ + LS ++ + +H L VK G D
Sbjct: 269 GECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFC 328
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L MY LG R A VF + + + W +I+G K G+ KA+E++ +M
Sbjct: 329 NSLIQMYASLGMMRQARTVF----SRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEV 384
Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
NV+ S++ ++++ + + + K
Sbjct: 385 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDK 444
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F+ M EK VVSW++MI GF N +AL F ML A V+ N T ++AL+ACA
Sbjct: 445 AIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAA 503
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
GAL +G +H ++ +G + AL+D+Y KCG A F KD+++W M
Sbjct: 504 TGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIM 563
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I G HG + A+ +F +M+ G PD F+A+L AC G V F SM Y
Sbjct: 564 IAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYS 623
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P++KH+ +V+LLSR GQ+ +A NFIN+MP TPD +WGAL CR H+ ++ ++A
Sbjct: 624 IVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELA 682
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 46/348 (13%)
Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
M V+ G+T A++VF + PE++ V WNV++ G K G L +A++L+ G+ P
Sbjct: 132 MLVRFGETWHAWRVFAKMPERD----VFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRP 187
Query: 227 K-----------KNVASW------------------VSLIDGFM----RKGDLKKAGELF 253
V W V +++ M + GD+ A ++F
Sbjct: 188 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVF 247
Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
+ M +SW AMI G +NGE L +F ML V+ N T+ S A + +
Sbjct: 248 DSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVT 307
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H F A +L+ MYA G + A VF +D +TWTAMI G
Sbjct: 308 FAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYE 367
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+G ++A++ + M + PD + L AC G + + + + FI V
Sbjct: 368 KNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIV 427
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA-CRTHKD 480
+ ++ + ++ ++DKA+ M E D V W ++ C H++
Sbjct: 428 VTNA-ILEMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRN 473
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 2/237 (0%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+++ +R G+ A +F +MPE+ V SW M+ G+ ++G ++AL ++ +M+ AGVR
Sbjct: 128 AMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRP 187
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
+ +T L +C V G VH ++ FG + + AL+ MYAKCG++ AA VF
Sbjct: 188 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVF 247
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
D ++W AMI G +G ++ F M++ +P+ ++ A V
Sbjct: 248 DSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVT 307
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
A + V ++ + + +G + +A ++M +T D + W A+
Sbjct: 308 FAKEMH-GLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRM-DTRDAMTWTAM 362
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 36/316 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
+T ++ + K ID A+ +F K++ ++ +I G N + +F ML
Sbjct: 428 VTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-AD 486
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+PN +T+ + A+ L G+ +H +++ G+EY+ ++ L D+YV+ G+T A+
Sbjct: 487 VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAW 546
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGF 240
F K+ V+ WN++I G G+ A+ F M K + ++V+L+
Sbjct: 547 AQFCAHGAKD----VVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCAC 602
Query: 241 MRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
R G + + ELF M EK + + M++ S+ G+ +A +M
Sbjct: 603 SRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEM-------- 654
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---------TALVDMYAKCGN 346
A GAL G R+H ++ + K + L D+YA
Sbjct: 655 -----PITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACL 709
Query: 347 IEAASLVFGETKEKDL 362
+ + V +EK L
Sbjct: 710 WDKLARVRKTMREKGL 725
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 281 LAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCND--FGLKGAIGTAL 337
LA +L++ D AL C A+E G+R + FGL+ +G A+
Sbjct: 72 LAQALWLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLR--LGNAM 129
Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
+ M + G A VF + E+D+ +W M+ G G ++A+ + +MM++G PD
Sbjct: 130 LSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDV 189
Query: 398 TVFLAILTAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452
F +L +C W G+ A +RF + E V + ++ + ++ G V A
Sbjct: 190 YTFPCVLRSCGGVPDWRMGREVHA----HVLRFGFGEEVDVLN--ALMTMYAKCGDVMAA 243
Query: 453 LNFINKMPETPDFVIWGAL 471
+ M D + W A+
Sbjct: 244 RKVFDSM-TVMDCISWNAM 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,633,347,807
Number of Sequences: 23463169
Number of extensions: 296271183
Number of successful extensions: 824431
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8286
Number of HSP's successfully gapped in prelim test: 2931
Number of HSP's that attempted gapping in prelim test: 658912
Number of HSP's gapped (non-prelim): 58489
length of query: 520
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 373
effective length of database: 8,910,109,524
effective search space: 3323470852452
effective search space used: 3323470852452
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)