BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010031
(520 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/465 (50%), Positives = 326/465 (70%), Gaps = 1/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+++
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + A+ Q+ L+
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 6/195 (3%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP N T ++S S + +IH I+ + + I T L+ + +D A
Sbjct: 290 KP-NEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAA 348
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
++F + K++ + +I+G A + F I F M+ +P+ + + V + + S
Sbjct: 349 TVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSS 408
Query: 144 LLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
+ LG + + +E V + D+ + GK A ++ + P + + W
Sbjct: 409 EVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMP---INPDLTTW 465
Query: 203 NVLINGC-SKIGYLR 216
L C + GY R
Sbjct: 466 AALYRACKAHKGYRR 480
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 276/509 (54%), Gaps = 40/509 (7%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S I E + L +N Q++Q+HAQII NL I +LIS+ SL + + A+ +
Sbjct: 15 SRRIFEERLQDLPKCAN-LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRV 73
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ N+H+ N LIR A+NS F M R + + TYPF+ K+ + S L
Sbjct: 74 FNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWL 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWN 203
+ + +H I K G+ D +V L D Y + G R A K+F++ E++ + WN
Sbjct: 134 PVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD----TVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
++ G K G LR A LF MP++++ SW +++DG+ R ++ KA ELFE+MPE+ VS
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249
Query: 264 WTAMINGFSQNGEAEKALAMF---------------------------------FQMLDA 290
W+ M+ G+S+ G+ E A MF QM+ +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G++ + V+S L+AC + G L G+R+H+ + ++ G + AL+DMYAKCGN++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + +KDL++W M+ GL +HG ++AI+ F +M G PD F+A+L +C ++
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + +++F SM Y + P V+H+ +V+LL RVG++ +A+ + MP P+ VIWGA
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR H + IAK L + L+ P
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDP 518
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 271/512 (52%), Gaps = 18/512 (3%)
Query: 18 NIKSSHKPSNNITE---------THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
N+ S PS+++ + ++ +I ++ K L A +I +L R+ Q
Sbjct: 6 NVHSLRVPSHHLRDFSASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQ 65
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
I++ + K +D A+S N+ ++N L +G SH + +V MLR SV P+
Sbjct: 66 FITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPS 125
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
TY + K+ + S G L I K G + ++ L D Y G+ R A KVFD
Sbjct: 126 SYTYSSLVKASSFAS--RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFD 183
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E PE++ + W +++ ++ + A L M +KN A+ LI+G+M G+L++
Sbjct: 184 EMPERDD----IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF QMP K ++SWT MI G+SQN +A+A+F++M++ G+ ++ T+ + +SACA
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LE G VH Y N F L IG+ALVDMY+KCG++E A LVF +K+L W ++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG ++A++ F KM +P+ F+++ TAC ++G V + SM DY
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I +V+H+ +V+L S+ G + +AL I M P+ VIWGAL CR HK+ IA+IA
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L P Y + + WR+
Sbjct: 480 NKLMVLE---PMNSGYYFLLVSMYAEQNRWRD 508
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 274/507 (54%), Gaps = 42/507 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI S+ QL+QIHA++++ L S + T+LI ++S I +A +FD
Sbjct: 20 SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ + LS L +GR
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G + D FV+ L +Y + + A VF+ P ++ ++ W +++
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
++ G +A+E+F M K +V WV+L+ + F DLK
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A +A+ MF +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE ++ Y+ +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
LVF T ++D++ W+AMI G +HGR +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF+ M D+ I P +H+ V++LL R G +D+A I MP P +WGA
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L AC+ H+ ++ + A Q S++ S
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPS 523
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 192/434 (44%), Gaps = 48/434 (11%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
N A+ +N++ + ++ T H++ + + R +HAQ+ A +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 67 TQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
LI+ + + + A ++F+ + + + ++ A+N + F M ++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
V+P+ + V + L L GR +H +VK G+E + + + L MY + G+ A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVS-- 235
+FD K KS +++LWN +I+G +K GY R+A+++F M K+V S +S
Sbjct: 278 ILFD----KMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333
Query: 236 ------------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
LID F + G ++ A +F++ ++ VV W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI G+ +G A +A++++ M GV ND T + L AC G + G N ++ +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQY 384
+ ++D+ + G+++ A V + + W A++ H R+ + +Y
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH-RHVELGEY 512
Query: 385 FKKMMYSGTEPDGT 398
+ ++S +P T
Sbjct: 513 AAQQLFS-IDPSNT 525
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 258/466 (55%), Gaps = 39/466 (8%)
Query: 26 SNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYAL 83
S +++ + LI + ST ++L+QIHA +I L + + +++++ S ++YA
Sbjct: 19 SGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAY 78
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVAS 141
+F KN ++N +IRG + +S + IS F+ ML SV+P RLTYP V K+
Sbjct: 79 LVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGR 138
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L GR LH +++K G+E D+F+R + MYV G A+++F
Sbjct: 139 LGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF-------------- 184
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
IG+ +V +W S+I GF + G + +A LF++MP++
Sbjct: 185 -------LGMIGF--------------DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNG 223
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW +MI+GF +NG + AL MF +M + V+ + FT+VS L+ACA +GA E G +H Y
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N F L + TAL+DMY KCG IE VF +K L W +MI GLA +G E+A
Sbjct: 284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERA 343
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F ++ SG EPD F+ +LTAC +SG+V A FF M+ Y IEPS+KH+T++VN
Sbjct: 344 MDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVN 403
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L G +++A I MP D VIW +L ACR + ++AK A
Sbjct: 404 VLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRA 449
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 128/326 (39%), Gaps = 68/326 (20%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A ++FD +N +N +I G N F+ + F M V+P+ T + +
Sbjct: 208 IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNA 267
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L GR +H IV++ E ++ V L DMY + G VF+ P+K S
Sbjct: 268 CAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLS-- 325
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
WN +I G + G+ +A++LF + + + S++ ++ G++ +A E F
Sbjct: 326 --CWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFR 383
Query: 255 QMPEKGVVS-----WTAMIN-----GFSQNGEA-------EKALAMFFQMLDAGVRANDF 297
M EK ++ +T M+N G + EA E+ ++ +L A + +
Sbjct: 384 LMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNV 443
Query: 298 TVVSALSACAK-----------------------------------------VG--ALEA 314
+ + C K VG ++E
Sbjct: 444 EMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDM 340
VH +ISC K A +L+D+
Sbjct: 504 DFEVHEFISCGGTHPKSAEIYSLLDI 529
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 8/461 (1%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
H +SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 7 HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ FV K+V + L G
Sbjct: 67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+HC +K G+E FV L MY G A KVFDE + N ++ WN +I C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ + A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G + NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ KA +FI +MP P ++W L AC +H + ++A+ Q
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 254/474 (53%), Gaps = 39/474 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
E + I + S + ++I+A II+H L SS + T+++ + +DYA +F+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
+ N+ ++N +IR NS + I + +LR S P+R T+PF+ KS ASL LG
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + K G + L DMY++ A KVFDE
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
M +++V SW SL+ G+ R G +KKA LF M +K +VSWTAMI
Sbjct: 170 ----------------MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMI 213
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++ G +A+ F +M AG+ ++ +++S L +CA++G+LE G +H Y F
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFL 273
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ + AL++MY+KCG I A +FG+ + KD+++W+ MI G A HG AI+ F +M
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+G FL +L+AC + G + L +FD MR DY IEP ++H+ ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502
+++A+ MP PD IWG+L +CRT + +A +A+ L P+ M
Sbjct: 394 LERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELE---PEDM 444
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 179/540 (33%), Positives = 278/540 (51%), Gaps = 79/540 (14%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
SS P ++I +SL+H+ + + LR IHAQ+I LHN +A S++ I S
Sbjct: 23 SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHF- 81
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ + YA+S+F NL I+N + RG A +S S + +V M+ L + PN T+PFV
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A G+ +H ++K G + D +V L MYVQ G+ A KVFD++P ++
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G ++ G ++A+ELF M K N
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 230 VAS--------------------------WV-------------SLIDGFMRKGDLKKAG 250
V W+ +LID + + G+L+ A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE++P K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +G
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR + + F +M G +PD F+ +L+AC +SG + L + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
DY + P ++H+ +++LL G +A IN M PD VIW +L AC+ H + ++ +
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 166/379 (43%), Gaps = 49/379 (12%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T LI + I+ A +FD K++ +N +I G AE +++ + F M++ +VR
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
P+ T V + A + LGR +H I G + + L D+Y + G+ A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
F+ P K+ V+ WN LI G + + ++A+ LF M +
Sbjct: 324 FERLPYKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 229 ----NVASWV-------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ W+ SLID + + GD++ A ++F + K + SW
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI GF+ +G A+ + +F +M G++ +D T V LSAC+ G L+ G + ++
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT-Q 498
Query: 326 DFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAI 382
D+ + + ++D+ G + A + + D + W +++ +HG E
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 383 QYFKKMMYSGTEPDGTVFL 401
+ + ++ E G+ L
Sbjct: 559 SFAENLIKIEPENPGSYVL 577
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+K++ +P + T ++S S S + RQ+H I H ++ +I LI S
Sbjct: 258 MKTNVRPDESTMVT-VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A +F+ K++ +N LI G + ++ + F MLR PN +T + +
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
A L + +GR +H I K GV + +R L DMY + G A +VF+ K+ S
Sbjct: 377 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
WN +I G + G + +LF M K + ++V L+ G L +
Sbjct: 437 S----WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
Query: 253 FEQMPE 258
F M +
Sbjct: 493 FRTMTQ 498
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 269/491 (54%), Gaps = 10/491 (2%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYALSIF 86
T I+S + S +++Q HA ++ LF + ++L++ A+ + K++ YA SI
Sbjct: 38 TPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSIL 97
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ N N +IR A +S + ++ F ML V P++ ++ FV K+ A+
Sbjct: 98 NRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFE 157
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H L +KSG+ D FV L ++Y + G A KV D P ++ + WN L+
Sbjct: 158 EGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD----AVSWNSLL 213
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G + +A LF M ++NV SW +I G+ G +K+A E+F+ MP + VVSW A
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ ++ G + L +F +MLD D FT+VS LSACA +G+L G VH YI +
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++G + TALVDMY+KCG I+ A VF T ++D+ TW ++I L++HG + A++ F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+Y G +P+G F+ +L+AC + G + A F+ M Y +EP+++H+ +V+LL R
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGR 453
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
+G++++A +N++P ++ +L AC+ + A+ LNL + Y
Sbjct: 454 MGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--DSSGYA 511
Query: 506 QTFMQQKGDGR 516
Q DGR
Sbjct: 512 QMSNLYASDGR 522
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/540 (30%), Positives = 272/540 (50%), Gaps = 70/540 (12%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N + ++P+ N + ISLI S +QL+Q H +I F+ ++L + A+L
Sbjct: 17 NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76
Query: 78 --SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
S++YA +FD N +N LIR A I F+ M+ S PN+ T+PF
Sbjct: 77 FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHLAD 172
+ K+ A +S LSLG+ LH + VKS V D F + D
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 173 M---------YVQLGKTRGAFKVFDETP-------------------------------- 191
+ +VQ G A ++F +
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 192 --EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D +
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
A E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSACA
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+VGALE G +H+YI + + + +AL+ MY+KCG++E + VF +++D+ W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M +Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P KH+ +V++L R G ++KA+ FI MP P +WGAL AC+ H + +A++A
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 11/250 (4%)
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALS 304
L+ A ++F+++P+ +W +I ++ + ++ F M+ ++ N +T +
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
A A+V +L G +H + G + +L+ Y CG++++A VF KEKD+++
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W +MI G G ++A++ FKKM + + +L+AC K+ F
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC-----AKIRNLEFGRQV 254
Query: 425 FDYFIEPSVKHHTVVVN----LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
Y E V + + N + ++ G ++ A + M E D V W + +D
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISED 313
Query: 481 TKIAKIALQS 490
+ A+ L S
Sbjct: 314 YEAAREVLNS 323
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 9/240 (3%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N IT +S + + R IH+ I H + + +T+ LI S ++ + +F
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ +++ +++ +I GLA + + F M +V+PN +T+ V + + L+
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L H + G+ + + D+ + G A K + P S +W L
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP---IPPSTSVWGAL 540
Query: 206 INGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
+ C L A L + P +N + V L + + + G + EL + M G+
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEP-RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 243/454 (53%), Gaps = 41/454 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNL 94
L H S +L +IH +I L +Q +S ++L S +DYA +
Sbjct: 14 LRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPN 73
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+ +N +IRG + + + + IS ++ MLR + P+ +TYPF+ KS + LS LG LHC
Sbjct: 74 YGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCS 133
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+VKSG+E+D F+ L MY A K+FDE
Sbjct: 134 VVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDE------------------------- 168
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
MP KN+ +W S++D + + GD+ A +F++M E+ VV+W++MI+G+ +
Sbjct: 169 ----------MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKR 218
Query: 275 GEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
GE KAL +F QM+ G +AN+ T+VS + ACA +GAL G VH YI L +
Sbjct: 219 GEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVIL 278
Query: 334 GTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
T+L+DMYAKCG+I A VF KE D L W A+I GLA HG +++Q F KM S
Sbjct: 279 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 338
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
+PD FL +L AC + G VK A +FF S++ + EP +H+ +V++LSR G V
Sbjct: 339 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKD 397
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
A +FI++MP P + GAL C H + ++A+
Sbjct: 398 AHDFISEMPIKPTGSMLGALLNGCINHGNLELAE 431
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 230/431 (53%), Gaps = 41/431 (9%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV +R LA S F IS + MLR P+ ++PF+ KS ASLSL G+ LHC +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
K G E + FV L MY + G A KVF+E P+ S+ + +N LI+G +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS--SQLSVCYNALISGYTANSKVT 138
Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
+ G +V + G++P V ++ S I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+M+ G ++ LF++MP KG+++W A+I+G+SQNG A L ++ QM +GV + F
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+VS LS+CA +GA + G V + N F + A + MYA+CGN+ A VF
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K L++WTAMI +HG E + F M+ G PDG VF+ +L+AC +SG L
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477
F +M+ +Y +EP +H++ +V+LL R G++D+A+ FI MP PD +WGAL AC+
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438
Query: 478 HKDTKIAKIAL 488
HK+ +A++A
Sbjct: 439 HKNVDMAELAF 449
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 165/403 (40%), Gaps = 53/403 (13%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
+Q+H + + T LIS + A +F+ P++ + +N LI G
Sbjct: 73 QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEE-NPQSSQLSVCYNALISGY 131
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
NS F M V + +T + L LGR LH VK G++ +
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
V MY++ G ++FDE P K ++ WN +I+G S+ G +EL+
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKG----LITWNAVISGYSQNGLAYDVLELYEQ 247
Query: 225 MPKKNVA----SWVSLI---------------------DGFM--------------RKGD 245
M V + VS++ +GF+ R G+
Sbjct: 248 MKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGN 307
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
L KA +F+ MP K +VSWTAMI + +G E L +F M+ G+R + V LSA
Sbjct: 308 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSA 367
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
C+ G + G+ + + ++ L+ + LVD+ + G + EA + E D
Sbjct: 368 CSHSGLTDKGLELFRAMK-REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDG 426
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
W A++ IH + A F K++ EP+ + +++
Sbjct: 427 AVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMS 467
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 263/465 (56%), Gaps = 12/465 (2%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH--KSIDYALSIFDHFTPKNL 94
L + + + L+QIHA ++++ L ++ + +LI SASL ++ YA +FD ++
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDV 77
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
I N ++RG A++ + +S + M + V P+R T+ FV K+ + L S G H
Sbjct: 78 SICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGK 137
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+V+ G + +V+ L + G A ++FD++ + +K + W+ + +G +K G
Sbjct: 138 VVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK----VAWSSMTSGYAKRGK 193
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ +A+ LF MP K+ +W +I G ++ ++ A ELF++ EK VV+W AMI+G+
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-----SCNDFGL 329
G ++AL +F +M DAG + T++S LSACA +G LE G R+H YI + +
Sbjct: 254 GYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYV 313
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
I AL+DMYAKCG+I+ A VF K++DL TW +I GLA+H E +I+ F++M
Sbjct: 314 GTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQ 372
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
P+ F+ ++ AC +SG+V +F MR Y IEP++KH+ +V++L R GQ+
Sbjct: 373 RLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQL 432
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
++A F+ M P+ ++W L AC+ + + ++ K A + S+
Sbjct: 433 EEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 477
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 272/539 (50%), Gaps = 79/539 (14%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTP 91
++SL+ L+QI AQ+I++ L +++LI+ +L +S +DY++ I
Sbjct: 56 LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIEN 115
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLG 148
N+ +NV IRG +E+ + + + MLR RP+ TYP + K A L L SLG
Sbjct: 116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ ++K +E + V M+ G A KVFDE+P ++ ++ WN LING
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRD----LVSWNCLING 231
Query: 209 CSKIGYLRKAVELFGMMPKKNVA--------------------------SWV-------- 234
KIG KA+ ++ +M + V +V
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-------------- 275
+L+D F + GD+ +A +F+ + ++ +VSWT MI+G+++ G
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEE 351
Query: 276 -----------------EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ALA+F +M + + ++ T++ LSAC+++GAL+ G+ +
Sbjct: 352 KDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWI 411
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H YI L A+GT+LVDMYAKCGNI A VF + ++ LT+TA+I GLA+HG
Sbjct: 412 HRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDA 471
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
AI YF +M+ +G PD F+ +L+AC + G ++ ++F M+ + + P +KH+++
Sbjct: 472 STAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSI 531
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+V+LL R G +++A + MP D +WGAL CR H + ++ + A + L+ S
Sbjct: 532 MVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPS 590
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 11/260 (4%)
Query: 8 RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
R A+A +++S+ + IT H +S + IH I ++L + + T
Sbjct: 369 RGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGT 428
Query: 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
L+ + +I ALS+F +N + +I GLA + + IS+F M+ + P
Sbjct: 429 SLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 488
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
+ +T+ + + ++ GR + KS + ++ H + M LG+ G +
Sbjct: 489 DEITFIGLLSACCHGGMIQTGRDYFSQM-KSRFNLNPQLK-HYSIMVDLLGRA-GLLEEA 545
Query: 188 DETPEKNKSES-VLLWNVLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMR 242
D E E+ +W L+ GC G + + A +L + P + L+DG
Sbjct: 546 DRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSD--SGIYVLLDGMYG 603
Query: 243 KGDL-KKAGELFEQMPEKGV 261
+ ++ + A M E+GV
Sbjct: 604 EANMWEDAKRARRMMNERGV 623
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 241/465 (51%), Gaps = 48/465 (10%)
Query: 38 IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I++ + + L QIHA I + + A++ I +S H+ +DYA IF+ +N
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +IRG +E+ ++ I+ +F +S V PNR T+P V K+ A + G+
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----------TPEKNKSESVL 200
+H L +K G D FV +L MYV G + A +F + T + + ++
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
LWNV+I DG+MR GD K A LF++M ++
Sbjct: 210 LWNVMI-------------------------------DGYMRLGDCKAARMLFDKMRQRS 238
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW MI+G+S NG + A+ +F +M +R N T+VS L A +++G+LE G +H
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + + +G+AL+DMY+KCG IE A VF ++++TW+AMI G AIHG+
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI F KM +G P ++ +LTAC + G V+ +F M +EP ++H+ +V
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+LL R G +D+A FI MP PD VIW AL ACR + ++ K
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK 463
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 17/290 (5%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD +++ +N +I G + N F+ + F M + +RPN +T V +++
Sbjct: 227 ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISR 286
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L L LG LH SG+ D + L DMY + G A VF+ P +N V+
Sbjct: 287 LGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPREN----VIT 342
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
W+ +ING + G A++ F M + V ++++L+ G +++ F QM
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMV 402
Query: 258 -----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
E + + M++ ++G ++A M ++ +D + L AC G +
Sbjct: 403 SVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM---PIKPDDVIWKALLGACRMQGNV 459
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
E G RV N + GA AL +MYA GN S + KEKD+
Sbjct: 460 EMGKRVANILMDMVPHDSGAY-VALSNMYASQGNWSEVSEMRLRMKEKDI 508
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 257/517 (49%), Gaps = 65/517 (12%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSAS 74
+K +KP I+S + + S +L Q+H +I + N+ SR+ ++
Sbjct: 2 MKKHYKP--------ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLI-DFCTTCP 52
Query: 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
++ YA S+F+ +++I+N +IRG + + + + + MLR P+ T+P+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V K+ + L + G +H +VK+G E + +V L MY+ G+ +VF++ P+ N
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWN 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------------- 232
V+ W LI+G A+E F M V +
Sbjct: 173 ----VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228
Query: 233 W-------------------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
W SLID + + GDL+ A LF+ MPE+ +VSW ++
Sbjct: 229 WFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSI 288
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I G+SQNG+AE+AL MF MLD G+ + T +S + A G + G +H Y+S F
Sbjct: 289 ITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF 348
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
AI ALV+MYAK G+ E+A F + ++KD + WT +I GLA HG +A+ F++
Sbjct: 349 VKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQR 408
Query: 388 MMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
M G PDG +L +L AC + G V+ +F MR + +EP+V+H+ +V++LSR
Sbjct: 409 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 468
Query: 447 GQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKI 483
G+ ++A + MP P+ IWGAL C H++ ++
Sbjct: 469 GRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLEL 505
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 173/425 (40%), Gaps = 63/425 (14%)
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM------YVQLGKTRGAFKV 186
P +S+ SL+ L + LH L++KS V + L D + L R F+
Sbjct: 8 PILSQLENCRSLVELNQ-LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------------- 231
D SV +WN +I G S KA+ + M +K +
Sbjct: 67 ID-------CPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119
Query: 232 ----SWVSLIDGFMRK--------------------GDLKKAGELFEQMPEKGVVSWTAM 267
+ S + GF+ K G++ +FE +P+ VV+W ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
I+GF N A+ F +M GV+AN+ +V L AC + + G H ++ F
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGF 239
Query: 328 --------GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
G + T+L+DMYAKCG++ A +F E+ L++W ++I G + +G E
Sbjct: 240 DPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAE 299
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ F M+ G PD FL+++ A G +L + + F++ + +
Sbjct: 300 EALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAI-VCAL 358
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
VN+ ++ G + A + E D + W + +H A Q + P
Sbjct: 359 VNMYAKTGDAESAKKAFEDL-EKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 417
Query: 500 QAMSY 504
++Y
Sbjct: 418 DGITY 422
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 164/375 (43%), Gaps = 32/375 (8%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHA--QIILHNLFA 61
NR + AI ++S+ +N ET ++ L+ + K + + H Q + + +
Sbjct: 187 NRFSDAIEAFREMQSNGVKAN---ETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYF 243
Query: 62 SSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
S++ +I + SL + A +FD + L +N +I G ++N + +
Sbjct: 244 QSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALC 303
Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
F+ ML L + P+++T+ V ++ LG+ +H + K+G DA + L +MY
Sbjct: 304 MFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYA 363
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
+ G A K F++ +K+ + W V+I G + G+ +A+ +F M +K A
Sbjct: 364 KTGDAESAKKAFEDLEKKD----TIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 419
Query: 232 -SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFF 285
+++ ++ G +++ F +M E V + M++ S+ G E+A +
Sbjct: 420 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVK 479
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M V+ N + L+ C LE R+ + ++ + L I L ++YAK G
Sbjct: 480 TM---PVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPE-ELGSGIYVLLSNIYAKAG 535
Query: 346 NIEAASLVFGETKEK 360
L+ K K
Sbjct: 536 RWADVKLIRESMKSK 550
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 254 bits (650), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/509 (29%), Positives = 251/509 (49%), Gaps = 43/509 (8%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS I +LI + + L+QIH +I H+L + + L+ + Y+
Sbjct: 7 PSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYL 66
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F H N+ ++N LI G N F + F+ + + + + T+P V K+ S
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LG LH L+VK G +D L +Y G+ A K+FDE P++ SV+ W
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR----SVVTWTA 182
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
L +G + G R+A++LF M + V W+
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L++ + + G ++KA +F+ M EK +V+W+ MI G++ N ++ + +F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QML ++ + F++V LS+CA +GAL+ G + I ++F + AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ VF E KEKD++ A I GLA +G + + F + G PDG+ FL +L
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF 465
C ++G ++ L FF+++ Y ++ +V+H+ +V+L R G +D A I MP P+
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482
Query: 466 VIWGALFCACRTHKDTKIAKIALQSSCSL 494
++WGAL CR KDT++A+ L+ +L
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIAL 511
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 247/470 (52%), Gaps = 40/470 (8%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS---SASL 75
I S +N+ ET +S + + ++L+QIHA+++ L S T+ +S S++
Sbjct: 4 ISCSFSLEHNLYET--MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTS 61
Query: 76 HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
+ YA +FD F + ++N++IRG + + + + + ML S N T+P +
Sbjct: 62 SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSL 121
Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
K+ ++LS +H I K G E D + L + Y G + A +FD PE +
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
+ WN +I G K G + A+ LF M +KN SW ++I G++ + D+ K
Sbjct: 182 ----VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV-QADMNK------- 229
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
+AL +F +M ++ V ++ ++ +ALSACA++GALE G
Sbjct: 230 -----------------------EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
+H+Y++ + +G L+DMYAKCG +E A VF K+K + WTA+I G A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G +AI F +M G +P+ F A+LTAC Y+G V+ F SM DY ++P+++H
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ +V+LL R G +D+A FI +MP P+ VIWGAL ACR HK+ ++ +
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 436
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 251 bits (642), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 232/440 (52%), Gaps = 35/440 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+++H ++ L ++ + L+ SL +D A +FD +++ +N++I G
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
++ I V M R V P +T V + C VK + D R
Sbjct: 215 KEYEESIELLVEMERNLVSPTSVTLLLVLSA--------------CSKVK---DKDLCKR 257
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
VH YV KT + + L N L+N + G + AV +F M
Sbjct: 258 VH---EYVSECKTEPSLR---------------LENALVNAYAACGEMDIAVRIFRSMKA 299
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
++V SW S++ G++ +G+LK A F+QMP + +SWT MI+G+ + G ++L +F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
AG+ ++FT+VS L+ACA +G+LE G + YI N +G AL+DMY KCG
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCS 419
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E A VF + ++D TWTAM+ GLA +G+ ++AI+ F +M +PD +L +L+AC
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
+SG V A FF MR D+ IEPS+ H+ +V++L R G V +A + KMP P+ ++
Sbjct: 480 NHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539
Query: 468 WGALFCACRTHKDTKIAKIA 487
WGAL A R H D +A++A
Sbjct: 540 WGALLGASRLHNDEPMAELA 559
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 3/243 (1%)
Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
G + A +LF ++PE VV W MI G+S+ + + ++ ML GV + T L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 304 SACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
+ + G AL G ++H ++ G + ALV MY+ CG ++ A VF ++D+
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
+W MI G YE++I+ +M + P L +L+AC L +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261
Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTK 482
+ + EPS++ +VN + G++D A+ M + D + W ++ + K
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM-KARDVISWTSIVKGYVERGNLK 319
Query: 483 IAK 485
+A+
Sbjct: 320 LAR 322
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/458 (31%), Positives = 245/458 (53%), Gaps = 42/458 (9%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSID---YALSIFD 87
++L+ S +S L+ IH ++ + ++F +SR+ + ++ +K + YA IF
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
NL +FN+LIR + + + ML+ + P+ +T+PF+ K+ + + + +
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G H IV+ G + D +V L MY G A ++F + ++ V+ W ++
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRD----VVSWTSMVA 191
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
G K G + A E+F MP +N+ +W +I+G+ + +KA +LFE M +GVV
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV----- 246
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
AN+ +VS +S+CA +GALE G R + Y+ +
Sbjct: 247 --------------------------ANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ +GTALVDM+ +CG+IE A VF E D L+W+++I GLA+HG +A+ YF +
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G P F A+L+AC + G V+ L +++M+ D+ IEP ++H+ +V++L R G
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
++ +A NFI KM P+ I GAL AC+ +K+T++A+
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAE 438
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 239/461 (51%), Gaps = 40/461 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDHFTP 91
+IS + + Q++QIH ++ L S I T+LI + + L +D YA + +
Sbjct: 52 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
+N ++ +IRG A F I+ + M + + P T+ + K+ ++ L+LGR
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
H + +V + DMYV+ A KVFDE
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDE---------------------- 209
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
MP+++V SW LI + R G+++ A ELFE +P K +V+WTAM+ GF
Sbjct: 210 -------------MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGF 256
Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
+QN + ++AL F +M +G+RA++ TV +SACA++GA + R + +
Sbjct: 257 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 316
Query: 332 --AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
IG+AL+DMY+KCGN+E A VF K++ T+++MI GLA HGR ++A+ F M+
Sbjct: 317 HVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMV 376
Query: 390 -YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+ F+ L AC +SG V FDSM + ++P+ H+T +V+LL R G+
Sbjct: 377 TQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGR 436
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ +AL I M P +WGAL ACR H + +IA+IA +
Sbjct: 437 LQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAE 477
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RL 123
I + LI S +++ A+++F KN+ ++ +I GLA + Q + F +M+ +
Sbjct: 320 IGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQT 379
Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRG 182
++PN +T+ + + L+ GR + + ++ GV+ R H M LG+T
Sbjct: 380 EIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQP---TRDHYTCMVDLLGRT-- 434
Query: 183 AFKVFDETPEKNKSESVL----LWNVLINGC-----SKIGYLRKAVELFGMMPKKNVASW 233
E E K+ SV +W L+ C +I + A LF + P + ++
Sbjct: 435 --GRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEI-AAEHLFELEPDI-IGNY 490
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMING 270
+ L + + GD + + + EKG+ VSW NG
Sbjct: 491 ILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNG 532
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 250/510 (49%), Gaps = 49/510 (9%)
Query: 23 HKPSNNITET----HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK- 77
H PS+++ E I ++I S L+Q+ + +I+ L S + +L+ +L
Sbjct: 12 HAPSSHMAEQLLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLC 71
Query: 78 SIDYALSIFDHFTPKNLHIFNVLIRGLAENS--HFQSCISHFVFMLRLSV-RPNRLTYPF 134
++ YA IFD F+ N H++ ++ + + H S S F M+ SV RPN YP
Sbjct: 72 NLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPL 131
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
V KS LS +H + KSG V+ L Y
Sbjct: 132 VLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYA------------------- 172
Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
S + ++ A +LF M ++NV SW +++ G+ R GD+ A LFE
Sbjct: 173 ---------------SSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFE 217
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
MPE+ V SW A++ +QNG +A+++F +M+ + +R N+ TVV LSACA+ G L+
Sbjct: 218 DMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQ 277
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+H + D + +LVD+Y KCGN+E AS VF +K L W +MI A
Sbjct: 278 LAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFA 337
Query: 374 IHGRYEQAIQYFKKMM---YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
+HGR E+AI F++MM + +PD F+ +L AC + G V +FD M + IE
Sbjct: 338 LHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIE 397
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490
P ++H+ +++LL R G+ D+AL ++ M D IWG+L AC+ H +A++A+++
Sbjct: 398 PRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKN 457
Query: 491 SCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
+LN P Y G+ W E
Sbjct: 458 LVALN---PNNGGYVAMMANLYGEMGNWEE 484
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSV 125
T ++S + I A+++F+ +++ +N ++ +N F +S F M+ S+
Sbjct: 197 TAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSI 256
Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
RPN +T V + A L L +G+H + + D FV L D+Y + G A
Sbjct: 257 RPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASS 316
Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVSLID 238
VF +K S+ WN +IN + G +A+ +F M K N+ +++ L++
Sbjct: 317 VFKMASKK----SLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLN 372
Query: 239 GFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
G + K F+ M E + + +I+ + G ++AL + M ++
Sbjct: 373 ACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM---KMK 429
Query: 294 ANDFTVVSALSACAKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
A++ S L+AC G L+ A V V N ++ N G + ++Y + GN E A
Sbjct: 430 ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPN--NGGYVAMMANLYGEMGNWEEA 485
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 254/486 (52%), Gaps = 40/486 (8%)
Query: 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS-IFDHFTPKNL 94
+L S L QIHA+II L + + ISS+S S S +F+
Sbjct: 15 TLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGT 74
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHC 153
+++N LI+G + F +S + M+R + RP+ T+P V K ++ + +G +H
Sbjct: 75 YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHG 134
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
L+++ G + D V D Y + A KVF E PE+N + W L+ K G
Sbjct: 135 LVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERN----AVSWTALVVAYVKSG 190
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS- 272
L +A +F +MP++N+ SW +L+DG ++ GDL A +LF++MP++ ++S+T+MI+G++
Sbjct: 191 ELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
Query: 273 ------------------------------QNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
QNG+ +A +F +M V+ ++F +V
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310
Query: 303 LSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
+SAC+++G E +V +Y+ N F + AL+DM AKCG+++ A+ +F E ++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVV-PALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL+++ +M+ G+AIHG +AI+ F+KM+ G PD F IL C S V+ L +F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+ MR Y I S H++ +VNLLSR G++ +A I MP WG+L C H +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 481 TKIAKI 486
T+IA++
Sbjct: 490 TEIAEV 495
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 228/455 (50%), Gaps = 41/455 (9%)
Query: 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
++Q+HA H L T L+ L ++ YA +FDH ++N LI+
Sbjct: 4 IKQLHA----HCLRTGVDETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYV 59
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
+ I + + +RP+ T+ F+ + AS S R LH +SG E D+F
Sbjct: 60 HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
LI +K+G L A +F M
Sbjct: 120 -----------------------------------CTTLITAYAKLGALCCARRVFDEMS 144
Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
K++V W ++I G+ R+GD+K A ELF+ MP K V SWT +I+GFSQNG +AL MF
Sbjct: 145 KRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLC 204
Query: 287 M-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
M D V+ N TVVS L ACA +G LE G R+ Y N F + A ++MY+KCG
Sbjct: 205 MEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCG 264
Query: 346 NIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
I+ A +F E +++L +W +MI LA HG++++A+ F +M+ G +PD F+ +L
Sbjct: 265 MIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLL 324
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
AC + G V F SM + I P ++H+ +++LL RVG++ +A + I MP PD
Sbjct: 325 LACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPD 384
Query: 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
V+WG L AC H + +IA+IA ++ L + P
Sbjct: 385 AVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNP 419
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 47/310 (15%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---- 100
+ LR +H+Q + S T LI++ + ++ A +FD + +++ ++N +
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 101 ---------------------------IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTY 132
I G ++N ++ + F+ M + SV+PN +T
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 218
Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
V + A+L L +GR L ++G + +V +MY + G A ++F+E
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL-- 276
Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK 248
++ WN +I + G +A+ LF M K + ++V L+ + G + K
Sbjct: 277 -GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 249 AGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
ELF+ M E +S + MI+ + G+ ++A + M ++ + + L
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM---PMKPDAVVWGTLL 392
Query: 304 SACAKVGALE 313
AC+ G +E
Sbjct: 393 GACSFHGNVE 402
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 59/504 (11%)
Query: 37 LIHSSNSTKQLRQIHAQII----LHNLFASSRI-------TTQLISSASLHKSI-DYALS 84
L+ + K L Q HAQ I + N F + + T + SAS K + YA S
Sbjct: 10 LLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATS 69
Query: 85 IFDHFTPKNLHIFNVLIR--GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
+F T + FN +IR L E S S FV M R SV P+ T+PFV K+ A+
Sbjct: 70 VFRFITNPSTFCFNTIIRICTLHEPSSLSS-KRFFVEMRRRSVPPDFHTFPFVFKACAAK 128
Query: 143 S--LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L+L + LHC ++ G+ D F
Sbjct: 129 KNGDLTLVKTLHCQALRFGLLSDLFT---------------------------------- 154
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
N LI S I + A++LF P+++V ++ LIDG ++ ++ +A ELF+ MP +
Sbjct: 155 -LNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRD 213
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+VSW ++I+G++Q +A+ +F +M+ G++ ++ +VS LSACA+ G + G +H+
Sbjct: 214 LVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHD 273
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + + T LVD YAKCG I+ A +F +K L TW AMI GLA+HG E
Sbjct: 274 YTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGEL 333
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
+ YF+KM+ SG +PDG F+++L C +SG V A N FD MR Y + +KH+ +
Sbjct: 334 TVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMA 393
Query: 441 NLLSRVGQVDKALNFINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
+LL R G +++A I +MP+ + W L CR H + +IA+ A +L+
Sbjct: 394 DLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALS- 452
Query: 497 SIPQAMSYCQTFMQQKGDGRTWRE 520
P+ + ++ + W E
Sbjct: 453 --PEDGGVYKVMVEMYANAERWEE 474
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP +N+ +S S ++ + IH LF S + T L+ + ID A+
Sbjct: 246 KP-DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAM 304
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
IF+ + K L +N +I GLA + + + + +F M+ ++P+ +T+ V +
Sbjct: 305 EIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSG 364
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
L+ R L + +S + + ++ + +AD+ + G A ++ ++ P + E +L
Sbjct: 365 LVDEARNLFDQM-RSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLL 423
Query: 201 LWNVLINGC 209
W+ L+ GC
Sbjct: 424 AWSGLLGGC 432
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 242/465 (52%), Gaps = 44/465 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
LI S S ++ QIHA I+ HNL R + +L + + H I ++L++F +
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +F I + N +V +L + PN T+ + KS ++ S G+ +H
Sbjct: 95 LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHT 150
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G+ D +V L D+Y + G A KVFD
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR------------------------ 186
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP++++ S ++I + ++G+++ A LF+ M E+ +VSW MI+G++Q
Sbjct: 187 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQ 235
Query: 274 NGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+G AL +F ++L G + ++ TVV+ALSAC+++GALE G +H ++ + L
Sbjct: 236 HGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK 295
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
+ T L+DMY+KCG++E A LVF +T KD++ W AMI G A+HG + A++ F +M +
Sbjct: 296 VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT 355
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451
G +P F+ L AC ++G V + F+SM +Y I+P ++H+ +V+LL R GQ+ +
Sbjct: 356 GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415
Query: 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496
A I M D V+W ++ +C+ H D + K + LN+
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 23/311 (7%)
Query: 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLS 124
+T +I+ + +++ A ++FD +++ +NV+I G A++ + F +L
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
+P+ +T + + + L GR +H + S + + V L DMY + G A
Sbjct: 255 PKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAV 314
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSLI 237
VF++TP K+ ++ WN +I G + GY + A+ LF G+ P +++ +
Sbjct: 315 LVFNDTPRKD----IVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD--ITFIGTL 368
Query: 238 DGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
G + + +FE M ++ + + +++ + G+ ++A M +
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM---NM 425
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
A+ S L +C G G + Y+ + G I L ++YA G+ E +
Sbjct: 426 DADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSG-IYVLLSNIYASVGDYEGVAK 484
Query: 353 VFGETKEKDLL 363
V KEK ++
Sbjct: 485 VRNLMKEKGIV 495
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 243/491 (49%), Gaps = 50/491 (10%)
Query: 41 SNSTKQLRQIHAQIILHNLFASS------RITTQLISSASLHKSIDYALSIFDHFTPKNL 94
S S LR +H LH S + L++ ++ +D A +FD T +++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
+N +I G N + +S FV ML + + T V A L+SLGR +H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
VK+ + L DMY + G A VF E ++ SV+ + +I G ++ G
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGL 377
Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
+AV+LF G+ P K V W+ +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
L+D + + G +++A +F +M K ++SW +I G+S+N A +AL++F +L+
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 497
Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
++ TV L ACA + A + G +H YI N + + +LVDMYAKCG + A ++F
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
+ KDL++WT MI G +HG ++AI F +M +G E D F+++L AC +SG V
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
FF+ MR + IEP+V+H+ +V++L+R G + KA FI MP PD IWGAL C
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Query: 475 CRTHKDTKIAK 485
CR H D K+A+
Sbjct: 678 CRIHHDVKLAE 688
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 226/497 (45%), Gaps = 62/497 (12%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
T ++ L S S K +++ I + S + ++L + + A +FD
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N+L+ LA++ F I F M+ V + T+ VSKS +SL + G
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
LH I+KSG V L Y++ + A KVFDE E++ V+ WN +ING
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSIINGY 271
Query: 210 SKIGYLRKAVELFGMM----PKKNVASWVS------------------------------ 235
G K + +F M + ++A+ VS
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331
Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
L+D + + GDL A +F +M ++ VVS+T+MI G+++ G A +A+ +F +M +
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G+ + +TV + L+ CA+ L+ G RVH +I ND G + AL+DMYAKCG+++ A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
LVF E + KD+++W +I G + + +A+ F ++ PD +L AC
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC-- 509
Query: 410 SGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+L+ FD MR YF + V + +V++ ++ G + A + +
Sbjct: 510 -----ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCGALLLAHMLFDDIA- 561
Query: 462 TPDFVIWGALFCACRTH 478
+ D V W + H
Sbjct: 562 SKDLVSWTVMIAGYGMH 578
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
++ V + F ++G E A+ + + + T+ S L CA +L+ G
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
V N+I N F + +G+ L MY CG+++ AS VF E K + L W ++ LA G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAI 403
+ +I FKKMM SG E D F +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCV 201
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 234/459 (50%), Gaps = 37/459 (8%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E ++ L+H N+ +L +IHA ++ H L S+ + IS + DYA +F H
Sbjct: 4 ERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQ 63
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
N+ +FN +I+ + +S F M + + TY + KS +SLS L G+
Sbjct: 64 NPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKC 123
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H ++++G +R+ + ++Y G+ A KVFDE
Sbjct: 124 VHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDE--------------------- 162
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
M ++NV W +I GF GD+++ LF+QM E+ +VSW +MI+
Sbjct: 163 --------------MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISS 208
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGL 329
S+ G +AL +F +M+D G ++ TVV+ L A +G L+ G +H+ S F
Sbjct: 209 LSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKD 268
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
+G ALVD Y K G++EAA+ +F + + +++++W +I G A++G+ E I F M+
Sbjct: 269 FITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMI 328
Query: 390 YSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G P+ FL +L C Y+GQV+ F M + +E +H+ +V+L+SR G+
Sbjct: 329 EEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGR 388
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+ +A F+ MP + +WG+L ACR+H D K+A++A
Sbjct: 389 ITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVA 427
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 52/273 (19%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ L +F + +++ +N +I L++ + + F M+ P+ T V
Sbjct: 184 VERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPI 243
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFKVFDETPEKNKS 196
ASL +L G+ +H SG+ D F+ V L D Y + G A +F + +N
Sbjct: 244 SASLGVLDTGKWIHSTAESSGLFKD-FITVGNALVDFYCKSGDLEAATAIFRKMQRRN-- 300
Query: 197 ESVLLWNVLING------------------------------------CSKIGYLRKAVE 220
V+ WN LI+G CS G + + E
Sbjct: 301 --VVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEE 358
Query: 221 LFGMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQN 274
LFG+M ++ + +++D R G + +A + + MP W ++++ +
Sbjct: 359 LFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSH 418
Query: 275 GEAEKA--LAMFFQMLDAGVRANDFTVVSALSA 305
G+ + A AM ++ G N + ++S L A
Sbjct: 419 GDVKLAEVAAMELVKIEPGNSGN-YVLLSNLYA 450
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 246/500 (49%), Gaps = 53/500 (10%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E + L+ S QLRQI AQ++LH S LI A +Y+ +F
Sbjct: 37 ERDFLFLLKKCISVNQLRQIQAQMLLH----SVEKPNFLIPKAVELGDFNYSSFLFSVTE 92
Query: 91 PKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
N + FN +IRGL N H ++ +S + M ++P++ TY FV + A L + +G
Sbjct: 93 EPNHYSFNYMIRGLTNTWNDH-EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVG 151
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
R +H + K G+E D + L MY + G+ A K+FDE E++ + WN +I+G
Sbjct: 152 RSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERD----TVSWNSMISG 207
Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVS----------------------------- 235
S+ GY + A++LF M ++ + + VS
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267
Query: 236 ------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
LI + + GDL A +F QM +K V+WTAMI +SQNG++ +A +FF+M
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 327
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
GV + T+ + LSAC VGALE G ++ + S + T LVDMY KCG +E
Sbjct: 328 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEE 387
Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
A VF K+ TW AMI A G ++A+ F +M P F+ +L+AC +
Sbjct: 388 ALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVH 444
Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWG 469
+G V +F M + + P ++H+T +++LLSR G +D+A F+ + P PD ++
Sbjct: 445 AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLA 504
Query: 470 ALFCACRTHKDTKIAKIALQ 489
A+ AC KD I + A++
Sbjct: 505 AILGACHKRKDVAIREKAMR 524
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 241 bits (616), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 238/462 (51%), Gaps = 43/462 (9%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+IS++ S + + IHA+II + + +LI S S+DYA +F + + N
Sbjct: 32 LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPN 91
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
++++ +I G + +S + M+ SV P+ +V SV L + R +H
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDN----YVITSVLKACDLKVCREIHA 147
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G V + + ++Y + G+ A K+FDE
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDE------------------------ 183
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP ++ + +I+ + G +K+A ELF+ + K V WTAMI+G +
Sbjct: 184 -----------MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVR 232
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
N E KAL +F +M V AN+FT V LSAC+ +GALE G VH+++ L +
Sbjct: 233 NKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFV 292
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
G AL++MY++CG+I A VF ++KD++++ MI GLA+HG +AI F+ M+ G
Sbjct: 293 GNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGF 352
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
P+ +A+L AC + G + + L F+SM+ + +EP ++H+ +V+LL RVG++++A
Sbjct: 353 RPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAY 412
Query: 454 NFINKMPETPDFVIWGALFCACRTHKD----TKIAKIALQSS 491
FI +P PD ++ G L AC+ H + KIAK +S
Sbjct: 413 RFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESE 454
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 44/208 (21%)
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T++S L +C + + + +H I + L+ + + +++ A VF
Sbjct: 31 TLISVLRSCKNIAHVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYV 87
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC---------- 407
++ +TAMI G GR + + +M+++ PD V ++L AC
Sbjct: 88 SNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHA 147
Query: 408 ---------------------WYSGQVKLALNFFDSMRFDYFIEPSVKH--HTVVVNLLS 444
SG++ A FD M P H TV++N S
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEM-------PDRDHVAATVMINCYS 200
Query: 445 RVGQVDKALNFINKMPETPDFVIWGALF 472
G + +AL + + D V W A+
Sbjct: 201 ECGFIKEALELFQDV-KIKDTVCWTAMI 227
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 108/245 (44%), Gaps = 17/245 (6%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N T ++S + + R +H+ + + S+ + LI+ S I+ A +
Sbjct: 253 ANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRV 312
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F K++ +N +I GLA + I+ F M+ RPN++T + + + LL
Sbjct: 313 FRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLL 372
Query: 146 SLGRGL-----HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
+G + V+ +E+ + D+ ++G+ A++ + P + + ++
Sbjct: 373 DIGLEVFNSMKRVFNVEPQIEHYGCI----VDLLGRVGRLEEAYRFIENIP--IEPDHIM 426
Query: 201 LWNVL----INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
L +L I+G ++G + A LF + ++V L + + G K++ E+ E M
Sbjct: 427 LGTLLSACKIHGNMELGE-KIAKRLFE-SENPDSGTYVLLSNLYASSGKWKESTEIRESM 484
Query: 257 PEKGV 261
+ G+
Sbjct: 485 RDSGI 489
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 250/498 (50%), Gaps = 54/498 (10%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--P 91
+++++ + + +Q+HA++I+H + + L ++ +D+A S F+
Sbjct: 10 LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-----NRLTYPFVSKSVASLSLLS 146
+N H +N ++ G +++ ++C V +L +R + F K+ L LL
Sbjct: 70 RNRHSWNTILSGYSKS---KTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLE 126
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
G +H L +K+G++ D +V L +MY QLG A KVFDE P +N +LW VL+
Sbjct: 127 NGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS----VLWGVLM 182
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA--------------------------------SWV 234
G K + LF +M +A S++
Sbjct: 183 KGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFI 242
Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
S+ID +++ L A +LFE ++ VV WT +I+GF++ A +A +F Q
Sbjct: 243 DQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302
Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
ML + N T+ + L +C+ +G+L G VH Y+ N + T+ +DMYA+CGN
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
I+ A VF E+++++W++MI I+G +E+A+ F KM P+ F+++L+A
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422
Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFV 466
C +SG VK F+SM DY + P +H+ +V+LL R G++ +A +FI+ MP P
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482
Query: 467 IWGALFCACRTHKDTKIA 484
WGAL ACR HK+ +A
Sbjct: 483 AWGALLSACRIHKEVDLA 500
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 31/271 (11%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +F+ +N+ ++ LI G A+ F MLR S+ PN+ T + S
Sbjct: 262 LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVS 321
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+SL L G+ +H ++++G+E DA DMY + G + A VFD PE+N
Sbjct: 322 CSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERN---- 377
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
V+ W+ +IN G +A++ F M +NV ++VSL+ G++K+ + FE
Sbjct: 378 VISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFE 437
Query: 255 QMP-EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
M + GVV + M++ + GE +A + ++ V SA
Sbjct: 438 SMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFI----------DNMPVKPMASA---W 484
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
GAL + R+H + L G I L+ M
Sbjct: 485 GALLSACRIHKEVD-----LAGEIAEKLLSM 510
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 8/203 (3%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N T I+ S S + + +H +I + + + T I + +I A ++F
Sbjct: 311 NQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVF 370
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLL 145
D +N+ ++ +I N F+ + F M +V PN +T+ +S S ++
Sbjct: 371 DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 430
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+ + GV + + D+ + G+ A D P K + + W L
Sbjct: 431 EGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASA---WGAL 487
Query: 206 INGCSKIGYLRKAVELFGMMPKK 228
++ C + K V+L G + +K
Sbjct: 488 LSACR----IHKEVDLAGEIAEK 506
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600
OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 241/451 (53%), Gaps = 18/451 (3%)
Query: 48 RQIHAQIILHNLFASSRITTQLIS-SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
R +HA ++ + +RI +L++ K +D A +FD +++ V+I A
Sbjct: 36 RVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLD-ARKVFDEMPKRDISGCVVMIGACAR 94
Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
N ++Q + F M + ++ + P + K+ +L G+ +HCL++K E DAF+
Sbjct: 95 NGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFI 154
Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CSKIGYLRKAVE 220
L DMY + G+ A KVF + E++ ++++N +I+G + L K ++
Sbjct: 155 VSSLIDMYSKFGEVGNARKVFSDLGEQD----LVVFNAMISGYANNSQADEALNLVKDMK 210
Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGE 276
L G+ P +V +W +LI GF + +K E+ E M G VVSWT++I+G N +
Sbjct: 211 LLGIKP--DVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQ 268
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
EKA F QML G+ N T+++ L AC + ++ G +H Y G + +A
Sbjct: 269 NEKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSA 328
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
L+DMY KCG I A ++F +T +K +T+ +MI+ A HG ++A++ F +M +G + D
Sbjct: 329 LLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLD 388
Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456
F AILTAC ++G L N F M+ Y I P ++H+ +V+LL R G++ +A I
Sbjct: 389 HLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMI 448
Query: 457 NKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
M PD +WGAL ACR H + ++A+IA
Sbjct: 449 KAMRMEPDLFVWGALLAACRNHGNMELARIA 479
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 83/373 (22%)
Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
L GR LH +V SG+ + L YV+ GK A KVFDE P+++ S V
Sbjct: 31 LFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCV---- 86
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKN-------VASWV---------------------- 234
V+I C++ GY +++++ F M K V S +
Sbjct: 87 VMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKF 146
Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
SLID + + G++ A ++F + E+ +V + AMI+G++ N +A++AL +
Sbjct: 147 SYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLV 206
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
M G++ + T + +S + +R +S
Sbjct: 207 KDMKLLGIKPDVITWNALISGFSH-------MRNEEKVS--------------------- 238
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
E L+ + + D+++WT++I GL + + E+A FK+M+ G P+ + +L
Sbjct: 239 ---EILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLL 295
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHH----TVVVNLLSRVGQVDKALNFINKMP 460
AC +K Y + ++ H + ++++ + G + +A+ K P
Sbjct: 296 PACTTLAYMKHGKEI-----HGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTP 350
Query: 461 ETPDFVIWGALFC 473
+ +FC
Sbjct: 351 KKTTVTFNSMIFC 363
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVA 140
A S+FD T +N+ + +I G + F+ F+ M + V+ N T + K+
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
G +H L+ + +E+D F+ L MY +LG A VF K+ +
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS----V 342
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
WN LI G + + +A ELF MP K++ SW +I GF KG++ K ELF MPEK
Sbjct: 343 SWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKD 402
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
++WTAMI+ F NG E+AL F +ML V N +T S LSA A + L G+++H
Sbjct: 403 NITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHG 462
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ + ++ +LV MY KCGN A +F E +++++ MI G + +G ++
Sbjct: 463 RVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKK 522
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
A++ F + SG EP+G FLA+L+AC + G V L +F SM+ Y IEP H+ +V
Sbjct: 523 ALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMV 582
Query: 441 NLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+LL R G +D A N I+ MP P +WG+L A +TH +A++A
Sbjct: 583 DLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELA 629
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 16/323 (4%)
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
IS + + ++ A +IF + +++ + +I AEN F M P R
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM------PVR 110
Query: 130 LTYPFVSKSVASL-SLLSLGRG--LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
+T + + A + + LG+ L C I E +A + +V+ G+ A +
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIP----EKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
+ ETP K + + NVL++G + G +AV +F M K V S S++ G+ + G +
Sbjct: 167 YAETPVKFRDS--VASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRI 224
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSA 305
A LF++M E+ V++WTAMI+G+ + G E +F +M G V+ N T+ A
Sbjct: 225 VDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKA 284
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
C G ++H +S +G +L+ MY+K G + A VFG K KD ++W
Sbjct: 285 CRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 366 TAMIWGLAIHGRYEQAIQYFKKM 388
++I GL + +A + F+KM
Sbjct: 345 NSLITGLVQRKQISEAYELFEKM 367
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 47/312 (15%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S ++ N I+ ++ G L++A +F M +++ SW+++I + G + KA ++F++
Sbjct: 47 STAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDE 106
Query: 256 MPEKGVVSWTAMINGFSQN----GEA--------EKALAMFFQMLDAGVRANDFTVVSAL 303
MP + S+ AMI +N G+A EK + M+ VRA F L
Sbjct: 107 MPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 304 SACAKV-------------GALEAG-----VRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
A V G L AG VRV ++ + +++V Y K G
Sbjct: 167 YAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEV----VSCSSMVHGYCKMG 222
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL- 404
I A +F E++++TWTAMI G G +E F +M G + LA++
Sbjct: 223 RIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMF 282
Query: 405 TAC-----WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459
AC + G L + FD F+ S ++++ S++G + +A M
Sbjct: 283 KACRDFVRYREGSQIHGLVSRMPLEFDLFLGNS------LMSMYSKLGYMGEAKAVFGVM 336
Query: 460 PETPDFVIWGAL 471
+ D V W +L
Sbjct: 337 -KNKDSVSWNSL 347
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 13/223 (5%)
Query: 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
T +I S I + +F K+ + +I N +++ + F ML+ V
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
PN T+ V + ASL+ L G +H +VK + D V+ L MY + G T A+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
F E N ++ +N +I+G S G+ +KA++LF M+ + N ++++L+ +
Sbjct: 496 FSCISEPN----IVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVH 551
Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
G + + F+ M E G + M++ ++G + A
Sbjct: 552 VGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDA 594
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N+ T + ++S S + QIH +++ N+ + L+S + + A IF
Sbjct: 437 NSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIF 496
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ N+ +N +I G + N + + F + PN +T+ + + + +
Sbjct: 497 SCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVD 556
Query: 147 LG 148
LG
Sbjct: 557 LG 558
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 226/446 (50%), Gaps = 50/446 (11%)
Query: 89 FTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
TP +N+ + LI GLA+N HF + + F M R V PN T+P K+VASL L
Sbjct: 67 LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVT 126
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI- 206
G+ +H L VK G D FV DMY + A K+FDE PE+N + WN I
Sbjct: 127 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFIS 182
Query: 207 ----------------------------------NGCSKIGYLRKAVELFGMMPKKNVAS 232
N CS +L ++L G++ + +
Sbjct: 183 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 242
Query: 233 WVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
VS LID + + ++ + +F +M K VSW +++ + QN E EKA ++ +
Sbjct: 243 DVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR 302
Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGN 346
V +DF + S LSACA + LE G +H + +C + + +G+ALVDMY KCG
Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGC 360
Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFLAIL 404
IE + F E EK+L+T ++I G A G+ + A+ F++M G P+ F+++L
Sbjct: 361 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 420
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD 464
+AC +G V+ + FDSMR Y IEP +H++ +V++L R G V++A FI KMP P
Sbjct: 421 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 480
Query: 465 FVIWGALFCACRTHKDTKIAKIALQS 490
+WGAL ACR H ++ +A ++
Sbjct: 481 ISVWGALQNACRMHGKPQLGLLAAEN 506
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 219/422 (51%), Gaps = 37/422 (8%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
QL+QIH +II HNL + QLIS +S YA +F+ + +N++IR L+
Sbjct: 35 QLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLS 94
Query: 106 ENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N + + F+ M+ + ++ T+PFV K+ + S + LG +H L +K+G D
Sbjct: 95 VNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDV 154
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
F + L D+Y + GK KVFD+
Sbjct: 155 FFQNTLMDLYFKCGKPDSGRKVFDK----------------------------------- 179
Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
MP +++ SW +++ G + L A +F QMP + VVSWTAMI + +N ++A +F
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M V+ N+FT+V+ L A ++G+L G VH+Y N F L +GTAL+DMY+KC
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAI 403
G+++ A VF + K L TW +MI L +HG E+A+ F++M + EPD F+ +
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC +G VK L +F M Y I P +H+ ++ LL + +V+KA N + M P
Sbjct: 360 LSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDP 419
Query: 464 DF 465
DF
Sbjct: 420 DF 421
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/460 (31%), Positives = 234/460 (50%), Gaps = 40/460 (8%)
Query: 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
+ SL N+ K L+Q H +I+ L + + I + S + YA S+F H N
Sbjct: 18 VTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPN 77
Query: 94 LHIFNVLIRGLA---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
++ N +IR L+ E + I+ + + L +P+ T+PFV K +S + GR
Sbjct: 78 TYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQ 137
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
+H +V G + V L MY G A K+FDE
Sbjct: 138 IHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDE--------------------- 176
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMI 268
M K+V W +L+ G+ + G++ +A L E MP + VSWT +I
Sbjct: 177 --------------MLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVI 222
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++++G A +A+ +F +ML V ++ T+++ LSACA +G+LE G R+ +Y+
Sbjct: 223 SGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMN 282
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ A++DMYAK GNI A VF E++++TWT +I GLA HG +A+ F +M
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +G P+ F+AIL+AC + G V L F+SMR Y I P+++H+ +++LL R G+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGK 402
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
+ +A I MP + IWG+L A H D ++ + AL
Sbjct: 403 LREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERAL 442
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 233/445 (52%), Gaps = 33/445 (7%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---V 125
++S + + +D A S+FD KN +N L+ +NS + +F R + V
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC--MLFKSRENWALV 220
Query: 126 RPNRLTYPFVSK----------------SVASLSLLSLGRG-------LHCLIVKSGVEY 162
N L FV K V S + + G L +S V+
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ- 279
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
D F + Y+Q A ++FD+ PE+N+ + WN ++ G + + A ELF
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSWNAMLAGYVQGERMEMAKELF 335
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
+MP +NV++W ++I G+ + G + +A LF++MP++ VSW AMI G+SQ+G + +AL
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F QM G R N + SALS CA V ALE G ++H + + +G AL+ MY
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+IE A+ +F E KD+++W MI G + HG E A+++F+ M G +PD +A
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L+AC ++G V +F +M DY + P+ +H+ +V+LL R G ++ A N + MP
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 463 PDFVIWGALFCACRTHKDTKIAKIA 487
PD IWG L A R H +T++A+ A
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETA 600
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 45/325 (13%)
Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
Y++ G+ A +VF P S + +N +I+G + G A +LF MP++++ SW
Sbjct: 74 YMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+I G++R +L KA ELFE MPE+ V SW M++G++QNG + A ++F +M +
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE---- 185
Query: 294 ANDFTVVSALSACAKVGALEAG----------------------VRVHNYISCNDF---- 327
ND + + LSA + +E V+ + F
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 328 GLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
++ + ++ YA+ G I+ A +F E+ +D+ TWTAM+ G + E+A + F
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
KM E + + A+L ++++A FD M +V ++ ++
Sbjct: 306 KM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPC-----RNVSTWNTMITGYAQC 356
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
G++ +A N +KMP+ D V W A+
Sbjct: 357 GKISEAKNLFDKMPKR-DPVSWAAM 380
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 158/340 (46%), Gaps = 22/340 (6%)
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP- 127
+IS + + A +FD ++L +NV+I+G N + F M V
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160
Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
N + + + R + K+ V ++A L YVQ K A +F
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDR----MPEKNDVSWNA-----LLSAYVQNSKMEEACMLF 211
Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
+ ++ +++ WN L+ G K + +A + F M ++V SW ++I G+ + G +
Sbjct: 212 ----KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
+A +LF++ P + V +WTAM++G+ QN E+A +F +M + N+ + + L+
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYV 323
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+ +E + + + C + + ++ YA+CG I A +F + ++D ++W A
Sbjct: 324 QGERMEMAKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
MI G + G +A++ F +M G + + F + L+ C
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 22/286 (7%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WNV I+ + G +A+ +F MP+ + S+ +I G++R G+ + A +LF++MPE+ +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW MI G+ +N KA +F M + V + + LS A+ G ++ V +
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDDARSVFDR 182
Query: 322 I-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
+ ND AL+ Y + +E A ++F + L++W ++ G + +
Sbjct: 183 MPEKNDVSW-----NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVE 237
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVV 439
A Q+F M D + I+T SG++ A FD S D F T +
Sbjct: 238 ARQFFDSM----NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT------WTAM 287
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
V+ + V++A +KMPE + V W A+ + ++AK
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNE-VSWNAMLAGYVQGERMEMAK 332
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 247/474 (52%), Gaps = 21/474 (4%)
Query: 27 NNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
+N++ + + +++S N +L R++ + NL + + I +SS + +D A+ +
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI----LSSYTKLGYVDDAIGL 177
Query: 86 FDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
D ++ +N L+ G A + I+ M ++P+ + + ++VA
Sbjct: 178 LDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAE 237
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L LG+ +H I+++ + YD +V L DMY++ G A VFD KN ++
Sbjct: 238 PGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKN----IVA 293
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP 257
WN L++G S L+ A L M K+ + +W SL G+ G +KA ++ +M
Sbjct: 294 WNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMK 353
Query: 258 EKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
EKGV VSWTA+ +G S+NG AL +F +M + GV N T+ + L + L
Sbjct: 354 EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLH 413
Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
+G VH + + + TALVDMY K G++++A +F K K L +W M+ G A
Sbjct: 414 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYA 473
Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
+ GR E+ I F M+ +G EPD F ++L+ C SG V+ +FD MR Y I P++
Sbjct: 474 MFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTI 533
Query: 434 KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+H + +V+LL R G +D+A +FI M PD IWGA +C+ H+D ++A+IA
Sbjct: 534 EHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIA 587
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 182/417 (43%), Gaps = 41/417 (9%)
Query: 50 IHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
IH +I L S +R+ + + S+ +A +FD ++ +N ++ +
Sbjct: 9 IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG 68
Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
+++ + F M + T + + ++ + GR +H +++ G+E + +
Sbjct: 69 NWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCN 128
Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
L MY + GK + KVF+ ++N S WN +++ +K+GY+ A+ L M
Sbjct: 129 SLIVMYSRNGKLELSRKVFNSMKDRNLSS----WNSILSSYTKLGYVDDAIGLLDEMEIC 184
Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
K ++ +W SL+ G+ K G ++ A+A+
Sbjct: 185 GLKPDIVTWNSLLSGYASK-------------------------------GLSKDAIAVL 213
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
+M AG++ + ++ S L A A+ G L+ G +H YI N + T L+DMY K
Sbjct: 214 KRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKT 273
Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
G + A +VF K+++ W +++ GL+ + A +M G +PD + ++
Sbjct: 274 GYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLA 333
Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461
+ G+ + AL+ M+ + + P+V T + + S+ G AL KM E
Sbjct: 334 SGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQE 389
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 128/276 (46%), Gaps = 27/276 (9%)
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
C +G+ K LF MPK++ +W ++ +R G+ +KA ELF +M G ++ + +
Sbjct: 36 CVSLGFANK---LFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTM 92
Query: 269 NGFSQNGEAEKALAMFFQM----LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
Q ++ A Q+ L G+ +N S + ++ G LE +V N S
Sbjct: 93 VKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFN--SM 150
Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQ 380
D L +++ Y K G ++ A + E + + D++TW +++ G A G +
Sbjct: 151 KDRNLSSW--NSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL--ALNFF---DSMRFDYFIEPSVKH 435
AI K+M +G +P + ++L A G +KL A++ + + + +D ++E
Sbjct: 209 AIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVE----- 263
Query: 436 HTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
T ++++ + G + A + M + + V W +L
Sbjct: 264 -TTLIDMYIKTGYLPYA-RMVFDMMDAKNIVAWNSL 297
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 236/462 (51%), Gaps = 49/462 (10%)
Query: 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPK 92
I+L+ S + K++RQIHA++ + + + + +L HK +DYA I D
Sbjct: 10 IALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKP 69
Query: 93 NLHIFNVLIRGLAENSHFQSCISH--FVFMLRL-----SVRPNRLTYPFVSKSVASLSLL 145
L N +IR +H +S + F F R+ ++P+ T F+ ++ L +
Sbjct: 70 TLFALNSMIR-----AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMR 124
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G +H + ++ G + D V+ L +Y +LG
Sbjct: 125 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELG--------------------------C 158
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
++ C K+ F +P + +++ R GD+ A +LFE MPE+ ++W
Sbjct: 159 LDSCHKV---------FNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWN 209
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
AMI+G++Q GE+ +AL +F M GV+ N ++S LSAC ++GAL+ G H+YI N
Sbjct: 210 AMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERN 269
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
+ + T LVD+YAKCG++E A VF +EK++ TW++ + GLA++G E+ ++ F
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
M G P+ F+++L C G V FDSMR ++ IEP ++H+ +V+L +R
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
G+++ A++ I +MP P +W +L A R +K+ ++ +A
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 15/243 (6%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N + ++S + Q R H+ I + + + R+ T L+ + ++ A+ +F
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVF 298
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
KN++ ++ + GLA N + C+ F M + V PN +T+ V + + + +
Sbjct: 299 WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 358
Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
G R + + G+E L D+Y + G+ A + + P K + +W+ L
Sbjct: 359 EGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAA---VWSSL 415
Query: 206 INGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
++ + K +EL + KK N ++V L + + D + + M
Sbjct: 416 LHA----SRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKS 471
Query: 259 KGV 261
KGV
Sbjct: 472 KGV 474
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 234/466 (50%), Gaps = 42/466 (9%)
Query: 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
N + ++S N + Q+H+ I + I + L+ S +++ A +F
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
D +N+ +N LI +N + F ML V P+ +T V + ASLS +
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
+G+ +H +VK+ + D + DMY +
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAK----------------------------- 301
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
CS+I ++A +F MP +NV + S+I G+ K A +F +M E+ VVSW
Sbjct: 302 ---CSRI---KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWN 355
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
A+I G++QNGE E+AL++F + V ++ + L ACA + L G++ H ++ +
Sbjct: 356 ALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKH 415
Query: 326 DFGLKGA------IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
F + +G +L+DMY KCG +E LVF + E+D ++W AMI G A +G
Sbjct: 416 GFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGN 475
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A++ F++M+ SG +PD + +L+AC ++G V+ ++F SM D+ + P H+T +
Sbjct: 476 EALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCM 535
Query: 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
V+LL R G +++A + I +MP PD VIWG+L AC+ H++ + K
Sbjct: 536 VDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGK 581
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
S + + N LI+ SK G L ++F MP++N+ +W S++ G + G L +A LF
Sbjct: 52 SNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRS 111
Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
MPE+ +W +M++GF+Q+ E+AL F M G N+++ S LSAC+ + + G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG 171
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
V+VH+ I+ + F IG+ALVDMY+KCGN+ A VF E ++++++W ++I +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF------DSMRFDYFI 429
G +A+ F+ M+ S EPD ++++AC +K+ D +R D +
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460
V++ ++ ++ +A + MP
Sbjct: 292 S------NAFVDMYAKCSRIKEARFIFDSMP 316
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 243/477 (50%), Gaps = 37/477 (7%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQ HA ++ + F + T L+ ++ L +F + +N + ++ ++ G A
Sbjct: 138 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATR 197
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPF--VSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ I F LR + Y F V S+A+ + LGR +HC+ +K+G+
Sbjct: 198 GRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVA 257
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKS----------------ESVLLWNVL---- 205
+ L MY + A K+FD + ++N E+V L++ +
Sbjct: 258 LSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG 317
Query: 206 -----------INGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAG 250
+N CS I YL + +L + K +++ + +L+D + + G L A
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADAR 377
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
+ F+ + E+ V WT++I+G+ QN + E+AL ++ +M AG+ ND T+ S L AC+ +
Sbjct: 378 KGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437
Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
LE G +VH + + FGL+ IG+AL MY+KCG++E +LVF T KD+++W AMI
Sbjct: 438 TLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMIS 497
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
GL+ +G+ ++A++ F++M+ G EPD F+ I++AC + G V+ +F+ M ++
Sbjct: 498 GLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLD 557
Query: 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P V H+ +V+LLSR GQ+ +A FI +W L AC+ H ++ A
Sbjct: 558 PKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYA 614
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 226/495 (45%), Gaps = 58/495 (11%)
Query: 27 NNITETHIISLIHSSNSTKQL--RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
N T T + L H S + R +H QII + L++ + + A S
Sbjct: 11 NPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHS 70
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSV 139
IF+ K++ +N LI G ++N S S+ V L +R PN T + K+
Sbjct: 71 IFNAIICKDVVSWNSLITGYSQNGGISS--SYTVMQLFREMRAQDILPNAYTLAGIFKAE 128
Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
+SL ++GR H L+VK D +V L MY + G KVF PE+N
Sbjct: 129 SSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN----T 184
Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKN------------------------------ 229
W+ +++G + G + +A+++F + ++
Sbjct: 185 YTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244
Query: 230 -----------VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
VA +L+ + + L +A ++F+ ++ ++W+AM+ G+SQNGE+
Sbjct: 245 CITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESL 304
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ +F +M AG++ +++T+V L+AC+ + LE G ++H+++ F TALV
Sbjct: 305 EAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALV 364
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAK G + A F +E+D+ WT++I G + E+A+ +++M +G P+
Sbjct: 365 DMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDP 424
Query: 399 VFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457
++L AC ++L +++ + +E + + + + S+ G ++ N +
Sbjct: 425 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG--SALSTMYSKCGSLEDG-NLVF 481
Query: 458 KMPETPDFVIWGALF 472
+ D V W A+
Sbjct: 482 RRTPNKDVVSWNAMI 496
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 47/393 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
RQIH I + L ++ L++ S +S++ A +FD +N ++ ++ G ++N
Sbjct: 241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQN 300
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M ++P+ T V + + + L G+ LH ++K G E F
Sbjct: 301 GESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT 360
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------- 208
L DMY + G A K FD E++ V LW LI+G
Sbjct: 361 TALVDMYAKAGCLADARKGFDCLQERD----VALWTSLISGYVQNSDNEEALILYRRMKT 416
Query: 209 ----------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
CS + L ++ G K V +L + + G L+
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLED 476
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
+F + P K VVSW AMI+G S NG+ ++AL +F +ML G+ +D T V+ +SAC+
Sbjct: 477 GNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSH 536
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTW 365
G +E G N +S + GL + +VD+ ++ G + EA + + L W
Sbjct: 537 KGFVERGWFYFNMMS-DQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLW 595
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
++ HG+ E + +K+M G+ T
Sbjct: 596 RILLSACKNHGKCELGVYAGEKLMALGSRESST 628
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 157/547 (28%), Positives = 253/547 (46%), Gaps = 58/547 (10%)
Query: 20 KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
KS+ N+ T IS + R IH Q ++ + + + ++ +
Sbjct: 111 KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRV 170
Query: 80 DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
+ A +FD K+ ++N +I G +N + I F ++ S R + T + +
Sbjct: 171 EDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
VA L L LG +H L K+G +V +Y + GK + +F E +
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREF----RKPD 286
Query: 199 VLLWNVLINGCSKIGYLRKAVELF--------------------------------GMMP 226
++ +N +I+G + G ++ LF G
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346
Query: 227 KKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K N S S L + + +++ A +LF++ PEK + SW AMI+G++QNG E A++
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+F +M + N T+ LSACA++GAL G VH+ + DF + TAL+ MYA
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KCG+I A +F +K+ +TW MI G +HG+ ++A+ F +M+ SG P FL
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526
Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
+L AC ++G VK F+SM Y EPSVKH+ +V++L R G + +AL FI M
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586
Query: 463 PDFVIWGALFCACRTHKDTKIAK-----------------IALQSSCSLNLSIPQAMSYC 505
P +W L ACR HKDT +A+ + L + S + + PQA +
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVR 646
Query: 506 QTFMQQK 512
QT ++K
Sbjct: 647 QTAKKRK 653
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/491 (26%), Positives = 221/491 (45%), Gaps = 50/491 (10%)
Query: 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
I++ + S S L Q HAQIILH + T+L S +I YA IF
Sbjct: 18 ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77
Query: 89 FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSL 147
++ +FNVL+RG + N S +S F + + ++PN TY F + +
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
GR +H V G + + + ++ MY + + A KVFD PEK+ +LWN +I+
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD----TILWNTMIS 193
Query: 208 G---------------------CSKIGY---------------LRKAVELFGMMPKKNVA 231
G C+++ LR +++ + K
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 232 SWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
S ++ GF+ + G +K LF + + +V++ AMI+G++ NGE E +L++F ++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
+ +G R T+VS + + + A +H Y ++F ++ TAL +Y+K I
Sbjct: 314 MLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEI 370
Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
E+A +F E+ EK L +W AMI G +G E AI F++M S P+ IL+AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVI 467
G + L D +R F E S+ T ++ + ++ G + +A + M + + V
Sbjct: 431 AQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE-VT 488
Query: 468 WGALFCACRTH 478
W + H
Sbjct: 489 WNTMISGYGLH 499
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 280/554 (50%), Gaps = 89/554 (16%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
TT P +++ +H+ + L+ + NS Q +Q+ AQI+ NL + ++L
Sbjct: 22 TTKWDPVQSLQLNHQS---------LVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRL 72
Query: 70 I--SSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
I S+ + +++D A +F +FTP N+ ++N +I ++ + + C + M+R V
Sbjct: 73 IFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVS 130
Query: 127 PNRLTYPFVSKSVASLS-------------LLSLGRGLHCLIVKS-------GVEYDAFV 166
P+R T+ ++ K+ + LS LSLG L +VK GV F
Sbjct: 131 PDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFA 190
Query: 167 RVHLADM---------YVQLGKTRGA----FKVFDETPEKNK------------------ 195
R+ D+ Y + G + A FK+ + E ++
Sbjct: 191 RMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRL 250
Query: 196 ---------------SESVLLWNVLIN---GCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
S +++L N L++ C + G ++A F M KK++ SW +++
Sbjct: 251 GKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRA---FDAMKKKDMRSWNTMV 307
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL-AMFFQM-LDAGVRAN 295
GF+R GD++ A +F+QMP++ +VSW +++ G+S+ G ++ + +F++M + V+ +
Sbjct: 308 VGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPD 367
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
T+VS +S A G L G VH + + +AL+DMY KCG IE A +VF
Sbjct: 368 RVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFK 427
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
EKD+ WT+MI GLA HG +QA+Q F +M G P+ LA+LTAC +SG V+
Sbjct: 428 TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEE 487
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN-KMPETPDFVIWGALFCA 474
L+ F+ M+ + +P +H+ +V+LL R G+V++A + + KMP P +WG++ A
Sbjct: 488 GLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSA 547
Query: 475 CRTHKDTKIAKIAL 488
CR +D + A++AL
Sbjct: 548 CRGGEDIETAELAL 561
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 24 KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
KP + +T +IS ++ R +H +I L + +++ LI I+ A
Sbjct: 365 KP-DRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAF 423
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
+F T K++ ++ +I GLA + + Q + F M V PN +T V + +
Sbjct: 424 MVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSG 483
Query: 144 LLSLGRGLHC---LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
L+ GLH + K G + + L D+ + G+ A + + S+S
Sbjct: 484 LVE--EGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQS-- 539
Query: 201 LWNVLINGCSKIGYLRKA----VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
+W +++ C + A EL + P+K +V L + + G + + E M
Sbjct: 540 MWGSILSACRGGEDIETAELALTELLKLEPEKE-GGYVLLSNIYATVGRWGYSDKTREAM 598
Query: 257 PEKGV 261
+GV
Sbjct: 599 ENRGV 603
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 10/449 (2%)
Query: 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
+ LR +H++IIL +L +S + +L+ + + K + A +FD +N+ I NV+IR
Sbjct: 56 RTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY 115
Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
N + + F M +VRP+ T+P V K+ + + +GR +H K G+
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175
Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
FV L MY + G A V DE ++ V+ WN L+ G ++ A+E+
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRD----VVSWNSLVVGYAQNQRFDDALEVCRE 231
Query: 225 MPKKNVA----SWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
M ++ + SL+ ++ ++F +M +K +VSW MI + +N
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
+A+ ++ +M G + ++ S L AC AL G ++H YI + AL+
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351
Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
DMYAKCG +E A VF K +D+++WTAMI GR A+ F K+ SG PD
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458
F+ L AC ++G ++ + F M Y I P ++H +V+LL R G+V +A FI
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471
Query: 459 MPETPDFVIWGALFCACRTHKDTKIAKIA 487
M P+ +WGAL ACR H DT I +A
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLA 500
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 259/500 (51%), Gaps = 28/500 (5%)
Query: 1 MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
M G+V N + AI ++++ +T + +S + ++ +Q HA I++ +
Sbjct: 246 MVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGM 305
Query: 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
+ + T L++ I+YA +FD K++ +N++I G + Q + ++
Sbjct: 306 ELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQ----QGLVEDAIY 361
Query: 120 MLRLSVRPNRLTYPFVS-----KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
M +L +R +L Y V+ + A L LG+ + C ++ E D + + DMY
Sbjct: 362 MCQL-MRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMY 420
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK 228
+ G A KVFD T EK+ ++LWN L+ ++ G +A+ LF G+ P
Sbjct: 421 AKCGSIVDAKKVFDSTVEKD----LILWNTLLAAYAESGLSGEALRLFYGMQLEGVPP-- 474
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV----SWTAMINGFSQNGEAEKALAMF 284
NV +W +I +R G + +A ++F QM G++ SWT M+NG QNG +E+A+
Sbjct: 475 NVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFL 534
Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAK 343
+M ++G+R N F++ ALSACA + +L G +H YI N +I T+LVDMYAK
Sbjct: 535 RKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAK 594
Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
CG+I A VFG +L AMI A++G ++AI ++ + G +PD +
Sbjct: 595 CGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNV 654
Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP 463
L+AC ++G + A+ F + ++P ++H+ ++V+LL+ G+ +KAL I +MP P
Sbjct: 655 LSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKP 714
Query: 464 DFVIWGALFCACRTHKDTKI 483
D + +L +C + T++
Sbjct: 715 DARMIQSLVASCNKQRKTEL 734
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%)
Query: 48 RQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
+QIHA+I+ + F + I T+L+ + +++ A +F +N+ + +I
Sbjct: 90 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + FV ML + P+ P V K+ +L GRG+H +VKSG+E F
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
V LADMY + G A KVFDE P++N + WN L+ G + G +A+ LF M
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRN----AVAWNALMVGYVQNGKNEEAIRLFSDM 265
Query: 226 PKKNVAS---------------------------------------WVSLIDGFMRKGDL 246
K+ V SL++ + + G +
Sbjct: 266 RKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI 325
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
+ A +F++M EK VV+W +I+G+ Q G E A+ M M ++ + T+ + +SA
Sbjct: 326 EYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAA 385
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
A+ L+ G V Y + F + + ++DMYAKCG+I A VF T EKDL+ W
Sbjct: 386 ARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWN 445
Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
++ A G +A++ F M G P+ + I+ + +GQV A + F M+
Sbjct: 446 TLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSS 505
Query: 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462
I P++ T ++N + + G ++A+ F+ KM E+
Sbjct: 506 GII-PNLISWTTMMNGMVQNGCSEEAILFLRKMQES 540
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 6/303 (1%)
Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV- 234
++G GA F E E + + C + + R + G + K + V
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
SL D + + G L A ++F+++P++ V+W A++ G+ QNG+ E+A+ +F M G
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQG 269
Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
V TV + LSA A +G +E G + H N L +GT+L++ Y K G IE A
Sbjct: 270 VEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
+VF EKD++TW +I G G E AI + M + D +++A +
Sbjct: 330 MVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 389
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+KL + E + + V+++ ++ G + A + E D ++W L
Sbjct: 390 NLKLGKE-VQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEK-DLILWNTL 447
Query: 472 FCA 474
A
Sbjct: 448 LAA 450
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 172/283 (60%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V++ +I SK G +KA +F M KN +W ++IDG+MR G + A ++F++MPE
Sbjct: 109 VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPE 168
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
+ ++SWTAMINGF + G E+AL F +M +GV+ + +++AL+AC +GAL G+ V
Sbjct: 169 RDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWV 228
Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
H Y+ DF + +L+D+Y +CG +E A VF +++ +++W ++I G A +G
Sbjct: 229 HRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNA 288
Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
+++ YF+KM G +PD F LTAC + G V+ L +F M+ DY I P ++H+
Sbjct: 289 HESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGC 348
Query: 439 VVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDT 481
+V+L SR G+++ AL + MP P+ V+ G+L AC H +
Sbjct: 349 LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNN 391
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GAL 312
Q + VSWT+ IN ++NG +A F M AGV N T ++ LS C G+
Sbjct: 30 QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSE 89
Query: 313 EAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLV---------------- 353
G +H Y +C GL +GTA++ MY+K G + A LV
Sbjct: 90 ALGDLLHGY-ACK-LGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMI 147
Query: 354 ---------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
F + E+DL++WTAMI G G E+A+ +F++M SG +PD
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYV 207
Query: 399 VFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455
+A L AC G + L + S F + +V+ +++L R G V+ A
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVLSQDF----KNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 456 INKMPETPDFVIWGALF 472
M E V W ++
Sbjct: 264 FYNM-EKRTVVSWNSVI 279
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 69/274 (25%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
+D A +FD ++L + +I G + + + + F M V+P+ + +
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
+L LS G +H ++ + + V L D+Y + G A +VF
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVF----------- 264
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
+N M K+ V SW S+I GF G+ ++ F +M E
Sbjct: 265 ---YN---------------------MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
K G + + T AL+AC+ VG +E G+R
Sbjct: 301 K-------------------------------GFKPDAVTFTGALTACSHVGLVEEGLRY 329
Query: 319 HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
+ C D+ + I LVD+Y++ G +E A
Sbjct: 330 FQIMKC-DYRISPRIEHYGCLVDLYSRAGRLEDA 362
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 48/513 (9%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
++IH Q++ F + + T L+ + I A +F+ T +N+ + +I G +N
Sbjct: 162 KKIHCQLVKVPSF-DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKN 220
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + F M +V N TY + + LS L G+ H +VKSG+E + +
Sbjct: 221 DLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLV 280
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----G 223
L DMYV+ G A +VF+E + +++W +I G + G + +A+ LF G
Sbjct: 281 TSLLDMYVKCGDISNARRVFNEHSHVD----LVMWTAMIVGYTHNGSVNEALSLFQKMKG 336
Query: 224 MMPKKNVASWVSLIDG----------------------------------FMRKGDLKKA 249
+ K N + S++ G + + + A
Sbjct: 337 VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDA 396
Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
+FE EK +V+W ++I+GFSQNG +AL +F +M V N TV S SACA +
Sbjct: 397 KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASL 456
Query: 310 GALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
G+L G +H Y F ++ GTAL+D YAKCG+ ++A L+F +EK+ +TW+A
Sbjct: 457 GSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSA 516
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI G G +++ F++M+ +P+ + F +IL+AC ++G V +F SM DY
Sbjct: 517 MIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDY 576
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
PS KH+T +V++L+R G++++AL+ I KMP PD +GA C H + +I
Sbjct: 577 NFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIV 636
Query: 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
++ L+L A Y DGR W +
Sbjct: 637 IKK--MLDLHPDDASYYVLVSNLYASDGR-WNQ 666
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 202/485 (41%), Gaps = 47/485 (9%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
L+ + LRQ H + + L I T+L+S A +FD + ++
Sbjct: 50 LLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYL 109
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+ V++R N + + +++ R + + + K+ L L G+ +HC +V
Sbjct: 110 WKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLV 169
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K +D V L DMY + G+ + A KVF++ +N V+ W +I G K
Sbjct: 170 KVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRN----VVCWTSMIAGYVKNDLCE 224
Query: 217 KAVELFGMMPKKNV----------------------ASW-----------------VSLI 237
+ + LF M + NV W SL+
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL 284
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D +++ GD+ A +F + +V WTAMI G++ NG +AL++F +M ++ N
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+ S LS C + LE G VH +S + ALV MYAKC A VF
Sbjct: 345 TIASVLSGCGLIENLELGRSVHG-LSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEME 403
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
EKD++ W ++I G + +G +A+ F +M P+G ++ +AC G + +
Sbjct: 404 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGS 463
Query: 418 NFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ S++ + SV T +++ ++ G A I E + + W A+
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAMIGGYG 522
Query: 477 THKDT 481
DT
Sbjct: 523 KQGDT 527
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 177/409 (43%), Gaps = 52/409 (12%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
Q + H ++ + SS + T L+ I A +F+ + +L ++ +I G
Sbjct: 260 QGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYT 319
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
N +S F M + ++PN +T V + L LGR +H L +K G+ +D
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTN 378
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
V L MY + + R A VF+ EK+ ++ WN +I+G S+ G + +A+ LF
Sbjct: 379 VANALVHMYAKCYQNRDAKYVFEMESEKD----IVAWNSIISGFSQNGSIHEALFLFHRM 434
Query: 223 --------------------------------------GMMPKKNVASWVSLIDGFMRKG 244
G + +V +L+D + + G
Sbjct: 435 NSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
D + A +F+ + EK ++W+AMI G+ + G+ +L +F +ML + N+ T S LS
Sbjct: 495 DPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILS 554
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKD 361
AC G + G + + + D+ + T +VDM A+ G +E A ++ + D
Sbjct: 555 ACGHTGMVNEGKKYFSSMY-KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPD 613
Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
+ + A + G +H R++ KKM+ PD + +++ + S
Sbjct: 614 VRCFGAFLHGCGMHSRFDLGEIVIKKML--DLHPDDASYYVLVSNLYAS 660
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 231/469 (49%), Gaps = 78/469 (16%)
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
TP +L ++N +++ LA+ F ++ F + + P+ T P V KS+ L + G
Sbjct: 8 TP-SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGE 66
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H VK+G+E+D++V L MY LGK KVFDE P+++ V+ WN LI+
Sbjct: 67 KVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRD----VVSWNGLISSY 122
Query: 210 SKIGYLRKAVELFGMMPKKN--------VASWVS-------------------------- 235
G A+ +F M +++ + S +S
Sbjct: 123 VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSV 182
Query: 236 -----LIDGFMRKGDLKKAGELFEQM-------------------------------PEK 259
L+D F + G L KA +F+ M P K
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
VV WTAM+NG+ Q ++AL +F M AG+R ++F +VS L+ CA+ GALE G +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
YI+ N + +GTALVDMYAKCG IE A VF E KE+D +WT++I+GLA++G
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
+A+ + +M G D F+A+LTAC + G V F SM + ++P +H + +
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 440 VNLLSRVGQVDKALNFINKMPETPD---FVIWGALFCACRTHKDTKIAK 485
++LL R G +D+A I+KM D ++ +L A R + + KIA+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAE 471
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
ID A +F+ K++ ++ ++ G + + F + F M +RP+ +
Sbjct: 229 IDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTG 288
Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
A L G+ +H I ++ V D V L DMY + G A +VF E E++ +
Sbjct: 289 CAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS- 347
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
W LI G + G +A++L+ M + + ++V+++ G + + ++F
Sbjct: 348 ---WTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFH 404
Query: 255 QMPEK 259
M E+
Sbjct: 405 SMTER 409
>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370
OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1
Length = 729
Score = 226 bits (576), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/481 (28%), Positives = 240/481 (49%), Gaps = 44/481 (9%)
Query: 46 QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
QL+ +H +++ + +++ + A +FD +++ +N +I G A
Sbjct: 162 QLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYA 221
Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
+ + M +RP++ T+ ++ L +GR LHC IVK+G + D
Sbjct: 222 SVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMH 281
Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
++ L MY++ GK +++V + P K+ V+ W V+I+G ++G KA+ +F M
Sbjct: 282 LKTALITMYLKCGKEEASYRVLETIPNKD----VVCWTVMISGLMRLGRAEKALIVFSEM 337
Query: 226 -------PKKNVASWV--------------------------------SLIDGFMRKGDL 246
+ +AS V SLI + + G L
Sbjct: 338 LQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL 397
Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSA 305
K+ +FE+M E+ +VSW A+I+G++QN + KAL +F +M V+ D FTVVS L A
Sbjct: 398 DKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQA 457
Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
C+ GAL G +H + + + TALVDMY+KCG +EAA F KD+++W
Sbjct: 458 CSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSW 517
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
+I G HG+ + A++ + + ++SG EP+ +FLA+L++C ++G V+ L F SM
Sbjct: 518 GILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVR 577
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
D+ +EP+ +H VV+LL R +++ A F + P + G + ACR + T++
Sbjct: 578 DFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIILDACRANGKTEVED 637
Query: 486 I 486
I
Sbjct: 638 I 638
Score = 151 bits (382), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 193/413 (46%), Gaps = 46/413 (11%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN I L+ + + +S F ML + P+ T+P + K+ ASL LS G +H ++
Sbjct: 14 FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
+G D ++ L ++Y + G A KVF+E E++ V+ W +I S+ G +
Sbjct: 74 VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERD----VVHWTAMIGCYSRAGIVG 129
Query: 217 KAVELF------GMMPKK------------------------------NVASWVSLIDGF 240
+A L G+ P ++A S+++ +
Sbjct: 130 EACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLY 189
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ + A +LF+QM ++ +VSW MI+G++ G + L + ++M G+R + T
Sbjct: 190 CKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFG 249
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
++LS + LE G +H I F + + TAL+ MY KCG EA+ V K
Sbjct: 250 ASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNK 309
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
D++ WT MI GL GR E+A+ F +M+ SG++ +++ +C G L +
Sbjct: 310 DVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVH 369
Query: 421 D-SMRFDYFIE-PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
+R Y ++ P++ ++ + ++ G +DK+L +M E D V W A+
Sbjct: 370 GYVLRHGYTLDTPALNS---LITMYAKCGHLDKSLVIFERMNER-DLVSWNAI 418
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/539 (21%), Positives = 237/539 (43%), Gaps = 70/539 (12%)
Query: 36 SLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
SL+ + S ++L IH Q++++ + I++ L++ + + +A +F+ +
Sbjct: 51 SLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRER 110
Query: 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
++ + +I + S M ++P +T + V ++ L + LH
Sbjct: 111 DVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQL---QCLH 167
Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
V G + D V + ++Y + A +FD+ +++ ++ WN +I+G + +
Sbjct: 168 DFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRD----MVSWNTMISGYASV 223
Query: 213 GYLRKAVELF------GMMPKKNV--ASW------------------------------- 233
G + + ++L G+ P + AS
Sbjct: 224 GNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLK 283
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
+LI +++ G + + + E +P K VV WT MI+G + G AEKAL +F +ML +G
Sbjct: 284 TALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSD 343
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ + S +++CA++G+ + G VH Y+ + + L +L+ MYAKCG+++ + ++
Sbjct: 344 LSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVI 403
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQ 412
F E+DL++W A+I G A + +A+ F++M + + D +++L AC +G
Sbjct: 404 FERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGA 463
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ + + FI P T +V++ S+ G ++ A + + D V WG L
Sbjct: 464 LPVG-KLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSI-SWKDVVSWGILI 521
Query: 473 CACRTHKDTKIAK------------------IALQSSCSLNLSIPQAMSYCQTFMQQKG 513
H IA +A+ SSCS N + Q + + ++ G
Sbjct: 522 AGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFG 580
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 233/487 (47%), Gaps = 50/487 (10%)
Query: 46 QLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
L+QIH ++ +F + R ++ L + YA + ++ +++ LI
Sbjct: 16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIG 75
Query: 103 GLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
+ +S + M R V P+R T+P + K+V L S H IVK G+
Sbjct: 76 HFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SNPFQFHAHIVKFGL 134
Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
+ D FVR L Y G A ++FD +K+ V+ W +I+G + G +A+
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKD----VVTWTAMIDGFVRNGSASEAMV 190
Query: 221 LFGMMPKKNVAS----------------------------------------WVSLIDGF 240
F M K VA+ SL+D +
Sbjct: 191 YFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMY 250
Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
+ A ++F++MP + VV+WTA+I G+ Q+ +K + +F +ML + V N+ T+
Sbjct: 251 GKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLS 310
Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
S LSACA VGAL G RVH Y+ N + GT L+D+Y KCG +E A LVF EK
Sbjct: 311 SVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK 370
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
++ TWTAMI G A HG A F M+ S P+ F+A+L+AC + G V+ F
Sbjct: 371 NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
SM+ + +EP H+ +V+L R G +++A I +MP P V+WGALF +C HKD
Sbjct: 431 LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKD 490
Query: 481 TKIAKIA 487
++ K A
Sbjct: 491 YELGKYA 497
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 5/192 (2%)
Query: 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
+KS P N T + ++S + + R++H +I +++ ++ T LI
Sbjct: 298 LKSDVAP-NEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC 356
Query: 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
++ A+ +F+ KN++ + +I G A + + + F ML V PN +T+ V +
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSA 416
Query: 139 VASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
A L+ GR L + + +E A + D++ + G A + + P + +
Sbjct: 417 CAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN- 475
Query: 198 SVLLWNVLINGC 209
++W L C
Sbjct: 476 --VVWGALFGSC 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,356,380
Number of Sequences: 539616
Number of extensions: 7024542
Number of successful extensions: 22781
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 15520
Number of HSP's gapped (non-prelim): 2253
length of query: 520
length of database: 191,569,459
effective HSP length: 122
effective length of query: 398
effective length of database: 125,736,307
effective search space: 50043050186
effective search space used: 50043050186
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)