Query 010031
Match_columns 520
No_of_seqs 626 out of 3283
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 20:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-73 6.9E-78 588.3 53.8 504 7-516 166-708 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-67 2.3E-72 547.2 53.5 499 7-514 65-604 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8E-66 1.7E-70 522.9 51.9 484 25-509 367-892 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 7.8E-67 1.7E-71 528.2 43.6 453 60-516 84-545 (697)
5 PLN03218 maturation of RBCL 1; 100.0 7E-65 1.5E-69 516.0 46.6 485 7-498 384-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-59 2.5E-64 476.0 43.5 454 29-494 88-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-33 9.2E-38 296.0 47.7 500 7-517 343-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-33 2E-37 293.5 49.3 498 6-515 308-853 (899)
9 PRK11447 cellulose synthase su 100.0 1.9E-24 4.1E-29 230.2 50.6 495 7-516 126-728 (1157)
10 PRK11447 cellulose synthase su 100.0 1.8E-24 3.8E-29 230.5 44.1 498 7-516 76-688 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 6E-24 1.3E-28 193.0 29.9 435 68-514 53-505 (966)
12 PRK09782 bacteriophage N4 rece 99.9 6.5E-22 1.4E-26 201.6 46.2 486 7-516 58-694 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1E-20 2.2E-25 192.9 50.5 463 40-516 56-660 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.2E-23 9E-28 187.6 28.1 407 97-514 51-471 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-20 4.5E-25 187.4 37.9 393 97-500 130-577 (615)
16 PRK10049 pgaA outer membrane p 99.9 2.9E-19 6.3E-24 182.3 42.0 418 60-504 12-466 (765)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-19 5.6E-24 179.6 40.4 275 212-500 307-603 (615)
18 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 177.1 29.0 293 171-493 42-346 (389)
19 PRK11788 tetratricopeptide rep 99.9 3.6E-20 7.8E-25 176.6 28.4 304 102-434 43-354 (389)
20 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.7E-24 180.1 31.5 348 131-498 44-407 (656)
21 PRK14574 hmsH outer membrane p 99.9 2.5E-17 5.4E-22 165.0 46.4 445 34-503 40-522 (822)
22 KOG2002 TPR-containing nuclear 99.9 6.4E-19 1.4E-23 168.8 32.9 443 61-514 268-765 (1018)
23 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.4E-23 174.4 36.1 345 73-425 15-380 (656)
24 PRK10049 pgaA outer membrane p 99.9 8.1E-18 1.7E-22 171.8 41.7 421 13-474 2-469 (765)
25 KOG2002 TPR-containing nuclear 99.9 4.5E-18 9.8E-23 163.1 33.4 500 9-515 146-732 (1018)
26 KOG0495 HAT repeat protein [RN 99.8 9.1E-16 2E-20 141.2 41.3 435 72-515 415-867 (913)
27 KOG4422 Uncharacterized conser 99.8 9.5E-17 2.1E-21 140.4 32.9 417 25-461 113-589 (625)
28 PRK14574 hmsH outer membrane p 99.8 6.7E-16 1.4E-20 154.9 39.7 417 72-516 43-501 (822)
29 KOG2003 TPR repeat-containing 99.8 4.4E-16 9.6E-21 137.3 29.5 447 62-515 200-710 (840)
30 KOG2076 RNA polymerase III tra 99.8 2.4E-14 5.3E-19 137.0 35.9 501 7-511 153-786 (895)
31 KOG1915 Cell cycle control pro 99.7 5.2E-14 1.1E-18 125.1 34.9 434 63-508 73-549 (677)
32 KOG0495 HAT repeat protein [RN 99.7 5.8E-13 1.3E-17 123.1 40.7 465 31-507 409-893 (913)
33 KOG2076 RNA polymerase III tra 99.7 5.7E-13 1.2E-17 127.8 41.4 470 32-504 143-710 (895)
34 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 144.6 10.6 246 267-517 14-266 (280)
35 KOG1915 Cell cycle control pro 99.7 6.1E-13 1.3E-17 118.4 33.2 445 41-494 86-585 (677)
36 PRK10747 putative protoheme IX 99.7 4.7E-13 1E-17 126.4 31.4 220 269-495 161-391 (398)
37 KOG4422 Uncharacterized conser 99.6 1.7E-12 3.7E-17 114.2 31.1 429 7-456 129-619 (625)
38 KOG0547 Translocase of outer m 99.6 4.1E-13 8.8E-18 120.0 26.8 84 97-184 118-203 (606)
39 KOG2003 TPR repeat-containing 99.6 8.6E-13 1.9E-17 116.9 27.9 432 10-447 218-708 (840)
40 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.5E-17 124.5 31.1 223 268-493 160-398 (409)
41 PF13429 TPR_15: Tetratricopep 99.6 1.5E-15 3.3E-20 137.0 9.3 250 237-494 15-277 (280)
42 KOG1173 Anaphase-promoting com 99.6 6.6E-12 1.4E-16 114.5 31.8 459 42-511 30-535 (611)
43 KOG1126 DNA-binding cell divis 99.6 8.4E-14 1.8E-18 129.3 19.5 203 293-500 418-626 (638)
44 KOG0547 Translocase of outer m 99.6 1.1E-11 2.4E-16 111.0 31.9 407 68-495 120-567 (606)
45 PRK10747 putative protoheme IX 99.6 2E-12 4.4E-17 122.1 27.2 274 107-390 97-389 (398)
46 KOG1155 Anaphase-promoting com 99.6 3.3E-11 7.1E-16 107.4 31.9 252 170-424 233-493 (559)
47 KOG1126 DNA-binding cell divis 99.6 1E-13 2.2E-18 128.8 16.8 262 245-516 334-608 (638)
48 KOG2047 mRNA splicing factor [ 99.6 1.7E-10 3.6E-15 107.0 36.6 281 232-516 389-711 (835)
49 KOG1155 Anaphase-promoting com 99.5 9.7E-12 2.1E-16 110.7 26.2 215 271-493 272-494 (559)
50 COG3071 HemY Uncharacterized e 99.5 3.6E-11 7.7E-16 105.5 28.9 283 177-494 97-390 (400)
51 KOG1173 Anaphase-promoting com 99.5 4.2E-11 9.1E-16 109.4 30.1 249 263-517 246-507 (611)
52 TIGR00540 hemY_coli hemY prote 99.5 3.1E-12 6.8E-17 121.5 24.3 279 175-459 95-396 (409)
53 COG2956 Predicted N-acetylgluc 99.5 1.6E-11 3.6E-16 104.3 24.5 213 176-390 47-277 (389)
54 KOG1174 Anaphase-promoting com 99.5 3.1E-10 6.8E-15 99.8 33.1 283 228-516 230-522 (564)
55 COG2956 Predicted N-acetylgluc 99.5 2.1E-11 4.6E-16 103.6 23.5 287 107-424 48-345 (389)
56 KOG2376 Signal recognition par 99.5 3.6E-10 7.8E-15 104.0 31.7 440 35-513 19-506 (652)
57 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.7E-15 102.1 27.3 276 107-389 97-388 (400)
58 KOG1129 TPR repeat-containing 99.4 6.8E-12 1.5E-16 106.6 15.4 240 265-509 227-473 (478)
59 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 4E-16 107.8 18.3 194 297-493 32-231 (234)
60 KOG4318 Bicoid mRNA stability 99.4 8E-10 1.7E-14 106.3 29.0 266 49-346 11-286 (1088)
61 KOG4318 Bicoid mRNA stability 99.4 1.9E-09 4.2E-14 103.8 31.0 441 14-494 11-557 (1088)
62 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.6E-15 101.7 22.2 191 263-459 33-229 (234)
63 KOG4162 Predicted calmodulin-b 99.4 3.3E-09 7.2E-14 100.8 30.8 430 57-501 317-790 (799)
64 KOG3785 Uncharacterized conser 99.4 9.4E-09 2E-13 88.9 30.6 438 35-496 29-492 (557)
65 KOG2047 mRNA splicing factor [ 99.3 5.3E-08 1.1E-12 90.9 36.2 27 96-122 140-166 (835)
66 PRK12370 invasion protein regu 99.3 2.6E-10 5.6E-15 112.8 22.7 229 276-516 276-524 (553)
67 KOG4162 Predicted calmodulin-b 99.3 9E-09 2E-13 98.0 29.8 353 159-516 318-771 (799)
68 PF13041 PPR_2: PPR repeat fam 99.3 6.2E-12 1.3E-16 79.4 5.4 50 92-141 1-50 (50)
69 PRK11189 lipoprotein NlpI; Pro 99.3 2.7E-09 5.9E-14 96.5 24.4 230 274-511 39-283 (296)
70 KOG1156 N-terminal acetyltrans 99.3 7.6E-08 1.6E-12 90.1 33.4 436 12-460 26-509 (700)
71 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.3E-16 77.1 6.9 50 360-409 1-50 (50)
72 PRK12370 invasion protein regu 99.3 4E-10 8.6E-15 111.4 19.1 199 310-514 275-490 (553)
73 KOG1156 N-terminal acetyltrans 99.3 1.6E-07 3.5E-12 87.9 34.4 438 43-493 22-510 (700)
74 KOG3785 Uncharacterized conser 99.3 9.4E-09 2E-13 88.9 24.2 404 70-490 29-453 (557)
75 KOG0548 Molecular co-chaperone 99.2 1.9E-08 4E-13 92.1 27.1 412 72-511 11-472 (539)
76 COG3063 PilF Tfp pilus assembl 99.2 5.1E-10 1.1E-14 91.0 15.2 143 368-514 41-188 (250)
77 KOG1129 TPR repeat-containing 99.2 1.9E-10 4E-15 98.1 12.1 213 299-517 226-447 (478)
78 KOG2376 Signal recognition par 99.2 2.3E-07 5.1E-12 85.9 32.3 168 7-190 26-201 (652)
79 COG3063 PilF Tfp pilus assembl 99.2 9.5E-09 2.1E-13 83.8 20.4 202 299-504 38-246 (250)
80 PF12569 NARP1: NMDA receptor- 99.2 1.6E-07 3.6E-12 89.9 32.1 252 34-291 10-292 (517)
81 KOG1840 Kinesin light chain [C 99.2 4E-09 8.7E-14 99.5 20.2 227 267-493 205-478 (508)
82 PF12569 NARP1: NMDA receptor- 99.2 6E-08 1.3E-12 92.9 27.2 175 280-459 130-331 (517)
83 PF04733 Coatomer_E: Coatomer 99.1 4.5E-09 9.7E-14 93.6 18.1 229 263-502 37-273 (290)
84 PRK11189 lipoprotein NlpI; Pro 99.1 3.3E-09 7.1E-14 96.0 16.8 202 308-516 38-253 (296)
85 KOG4340 Uncharacterized conser 99.1 2.8E-07 6E-12 78.1 24.7 339 97-459 13-372 (459)
86 KOG0624 dsRNA-activated protei 99.1 2.5E-07 5.3E-12 80.0 24.7 317 165-508 39-384 (504)
87 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.6E-13 95.4 18.7 221 296-516 199-467 (508)
88 KOG3617 WD40 and TPR repeat-co 99.0 9.4E-07 2E-11 85.1 29.0 131 42-190 742-884 (1416)
89 KOG1174 Anaphase-promoting com 99.0 4.2E-07 9.1E-12 80.6 24.4 386 62-461 96-499 (564)
90 KOG0985 Vesicle coat protein c 99.0 5E-06 1.1E-10 82.0 33.6 129 244-385 1089-1217(1666)
91 KOG3616 Selective LIM binding 99.0 1.4E-06 3.1E-11 82.9 29.1 189 270-488 741-931 (1636)
92 KOG3616 Selective LIM binding 99.0 7.3E-07 1.6E-11 84.8 27.0 220 237-490 739-962 (1636)
93 PRK15359 type III secretion sy 99.0 9.6E-09 2.1E-13 81.7 12.1 125 382-512 13-139 (144)
94 PF04733 Coatomer_E: Coatomer 99.0 7.2E-09 1.6E-13 92.3 12.5 232 269-515 9-251 (290)
95 KOG1127 TPR repeat-containing 99.0 3.1E-07 6.6E-12 90.2 23.3 128 28-157 492-624 (1238)
96 cd05804 StaR_like StaR_like; a 98.9 1.8E-06 4E-11 81.3 26.9 192 303-495 121-337 (355)
97 KOG3617 WD40 and TPR repeat-co 98.9 8.5E-06 1.8E-10 78.8 30.4 259 29-320 801-1104(1416)
98 KOG4340 Uncharacterized conser 98.9 5.7E-07 1.2E-11 76.3 20.2 85 271-357 251-336 (459)
99 PRK04841 transcriptional regul 98.9 3.9E-06 8.4E-11 89.6 32.2 322 104-425 384-759 (903)
100 PRK04841 transcriptional regul 98.9 3.6E-05 7.8E-10 82.3 38.9 325 173-499 383-765 (903)
101 cd05804 StaR_like StaR_like; a 98.9 6E-06 1.3E-10 77.8 29.5 148 140-289 54-214 (355)
102 KOG0548 Molecular co-chaperone 98.8 5.7E-06 1.2E-10 76.3 25.3 101 36-139 10-114 (539)
103 KOG1125 TPR repeat-containing 98.8 2E-07 4.3E-12 86.3 16.0 241 271-516 295-559 (579)
104 KOG0985 Vesicle coat protein c 98.8 0.00015 3.3E-09 72.1 35.3 374 92-512 982-1367(1666)
105 KOG1125 TPR repeat-containing 98.8 8.9E-08 1.9E-12 88.5 13.0 206 306-514 295-513 (579)
106 KOG0624 dsRNA-activated protei 98.8 1.7E-05 3.8E-10 68.9 25.7 306 62-390 37-369 (504)
107 PRK10370 formate-dependent nit 98.7 9.1E-07 2E-11 74.5 16.6 156 338-505 23-184 (198)
108 KOG1127 TPR repeat-containing 98.7 5.8E-06 1.2E-10 81.6 22.8 386 110-514 474-899 (1238)
109 KOG1070 rRNA processing protei 98.7 2.6E-06 5.7E-11 86.8 21.0 221 196-417 1455-1691(1710)
110 KOG1128 Uncharacterized conser 98.7 1.3E-06 2.8E-11 83.3 17.3 210 234-461 402-615 (777)
111 TIGR03302 OM_YfiO outer membra 98.7 9.6E-07 2.1E-11 77.6 15.9 60 438-497 171-235 (235)
112 PLN02789 farnesyltranstransfer 98.7 4.9E-06 1.1E-10 75.3 20.2 129 379-511 125-267 (320)
113 TIGR03302 OM_YfiO outer membra 98.6 1.5E-06 3.2E-11 76.4 15.5 167 330-516 32-220 (235)
114 PLN02789 farnesyltranstransfer 98.6 4.5E-05 9.7E-10 69.2 24.6 237 264-506 40-314 (320)
115 TIGR02552 LcrH_SycD type III s 98.6 9E-07 1.9E-11 70.1 12.3 118 384-505 5-125 (135)
116 PF12854 PPR_1: PPR repeat 98.6 5.4E-08 1.2E-12 54.9 3.7 31 160-190 3-33 (34)
117 PF12854 PPR_1: PPR repeat 98.6 8.3E-08 1.8E-12 54.1 4.1 32 392-423 2-33 (34)
118 KOG1070 rRNA processing protei 98.6 5.5E-06 1.2E-10 84.6 19.5 199 295-494 1457-1663(1710)
119 PRK15179 Vi polysaccharide bio 98.6 8.7E-06 1.9E-10 81.4 20.5 138 361-502 85-225 (694)
120 PRK14720 transcript cleavage f 98.6 1.5E-05 3.2E-10 80.6 22.0 234 198-476 30-268 (906)
121 KOG3081 Vesicle coat complex C 98.6 5.9E-05 1.3E-09 63.5 21.5 155 338-499 115-276 (299)
122 KOG1128 Uncharacterized conser 98.5 4.5E-06 9.7E-11 79.7 16.6 215 60-289 395-615 (777)
123 COG4783 Putative Zn-dependent 98.5 4.3E-05 9.4E-10 70.0 21.4 203 77-299 251-462 (484)
124 KOG3081 Vesicle coat complex C 98.5 5.3E-05 1.2E-09 63.7 20.1 169 283-460 95-269 (299)
125 KOG1914 mRNA cleavage and poly 98.5 0.00077 1.7E-08 62.7 29.0 398 92-497 18-504 (656)
126 KOG0553 TPR repeat-containing 98.5 1.2E-06 2.5E-11 75.0 10.2 108 407-516 91-200 (304)
127 COG5010 TadD Flp pilus assembl 98.5 1.1E-05 2.3E-10 67.8 15.4 183 330-518 66-254 (257)
128 PRK15359 type III secretion sy 98.5 4.4E-06 9.6E-11 66.4 12.8 109 361-473 23-134 (144)
129 COG5010 TadD Flp pilus assembl 98.5 5.3E-05 1.1E-09 63.8 19.3 164 293-461 63-230 (257)
130 PRK10370 formate-dependent nit 98.5 6.4E-06 1.4E-10 69.4 14.2 134 369-516 23-161 (198)
131 PRK14720 transcript cleavage f 98.4 0.00012 2.6E-09 74.3 24.6 281 163-502 30-314 (906)
132 KOG3060 Uncharacterized conser 98.4 6.6E-05 1.4E-09 62.7 18.1 193 274-501 25-227 (289)
133 PRK15179 Vi polysaccharide bio 98.4 1.4E-05 3.1E-10 79.9 16.9 121 393-516 82-205 (694)
134 KOG1914 mRNA cleavage and poly 98.4 0.0022 4.7E-08 59.9 34.3 386 60-460 17-499 (656)
135 COG4783 Putative Zn-dependent 98.3 4.4E-05 9.5E-10 70.0 16.5 143 365-512 309-455 (484)
136 PF09976 TPR_21: Tetratricopep 98.3 4.9E-05 1.1E-09 60.7 15.4 125 364-492 14-145 (145)
137 PRK15363 pathogenicity island 98.3 3.2E-06 6.9E-11 66.0 7.9 77 438-514 40-118 (157)
138 PF07079 DUF1347: Protein of u 98.3 0.0014 3.1E-08 59.7 25.4 415 37-471 15-531 (549)
139 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.6E-05 3.4E-10 61.3 11.1 106 399-504 4-115 (119)
140 PLN03088 SGT1, suppressor of 98.3 1.2E-05 2.5E-10 74.8 12.0 106 405-512 10-117 (356)
141 KOG3060 Uncharacterized conser 98.2 9.2E-05 2E-09 61.9 15.1 147 364-514 54-203 (289)
142 PRK10153 DNA-binding transcrip 98.2 6.5E-05 1.4E-09 72.9 16.4 140 360-501 335-489 (517)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.6E-05 1.2E-09 70.0 14.8 121 335-460 173-295 (395)
144 KOG2053 Mitochondrial inherita 98.2 0.0096 2.1E-07 59.2 41.0 457 41-510 22-553 (932)
145 TIGR00756 PPR pentatricopeptid 98.2 3.6E-06 7.9E-11 48.3 4.4 35 95-129 1-35 (35)
146 PF13432 TPR_16: Tetratricopep 98.2 3.3E-06 7.2E-11 56.8 4.8 61 439-499 3-65 (65)
147 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 47.5 4.6 34 262-295 1-34 (35)
148 PF13812 PPR_3: Pentatricopept 98.1 5.2E-06 1.1E-10 47.3 4.1 33 95-127 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 98.1 6.3E-06 1.4E-10 46.9 4.3 33 262-294 2-34 (34)
150 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.5E-09 58.6 13.0 113 344-459 24-144 (145)
151 PRK02603 photosystem I assembl 98.1 0.0001 2.3E-09 60.9 12.7 130 362-514 35-166 (172)
152 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.5E-09 64.8 14.8 143 363-508 2-150 (280)
153 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.5E-09 58.0 12.4 61 363-424 52-112 (135)
154 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4E-09 66.6 15.1 124 234-359 173-296 (395)
155 cd00189 TPR Tetratricopeptide 98.1 4.3E-05 9.4E-10 56.0 9.3 93 402-496 5-99 (100)
156 KOG2053 Mitochondrial inherita 98.0 0.022 4.7E-07 56.9 35.1 393 103-514 18-488 (932)
157 PF12895 Apc3: Anaphase-promot 98.0 2E-05 4.4E-10 56.1 6.3 80 411-490 3-83 (84)
158 PF14559 TPR_19: Tetratricopep 97.9 9.3E-06 2E-10 55.2 3.5 62 445-506 3-66 (68)
159 PF13414 TPR_11: TPR repeat; P 97.9 1.6E-05 3.5E-10 54.2 4.3 65 432-496 2-69 (69)
160 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.02 4.4E-07 52.5 30.3 144 363-509 398-546 (660)
161 PF13428 TPR_14: Tetratricopep 97.9 2.5E-05 5.3E-10 47.4 4.2 42 466-507 2-43 (44)
162 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.1E-09 66.8 11.8 120 58-177 61-186 (429)
163 PF13371 TPR_9: Tetratricopept 97.8 4.8E-05 1E-09 52.5 5.6 68 440-507 2-71 (73)
164 KOG0550 Molecular chaperone (D 97.8 0.0011 2.3E-08 59.7 15.0 109 408-516 260-374 (486)
165 PF12895 Apc3: Anaphase-promot 97.8 6E-05 1.3E-09 53.6 6.1 81 375-458 2-83 (84)
166 PF14938 SNAP: Soluble NSF att 97.8 0.0013 2.9E-08 59.2 15.5 21 267-287 41-61 (282)
167 PF01535 PPR: PPR repeat; Int 97.8 4E-05 8.6E-10 42.4 3.7 31 262-292 1-31 (31)
168 KOG2041 WD40 repeat protein [G 97.8 0.04 8.7E-07 53.4 25.0 200 60-286 689-903 (1189)
169 CHL00033 ycf3 photosystem I as 97.7 0.00044 9.6E-09 56.9 11.0 100 400-499 38-154 (168)
170 PRK15363 pathogenicity island 97.7 0.00083 1.8E-08 52.7 11.6 96 361-460 34-130 (157)
171 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0008 1.7E-08 51.7 11.8 96 364-461 4-104 (119)
172 COG3898 Uncharacterized membra 97.7 0.012 2.7E-07 52.8 19.8 125 377-510 244-373 (531)
173 KOG0553 TPR repeat-containing 97.7 0.00048 1E-08 59.4 10.9 91 373-468 92-185 (304)
174 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 42.0 3.5 29 96-124 2-30 (31)
175 PF08579 RPM2: Mitochondrial r 97.7 0.00049 1.1E-08 50.0 8.9 81 96-176 27-116 (120)
176 PF04840 Vps16_C: Vps16, C-ter 97.7 0.04 8.6E-07 50.1 23.8 108 233-356 180-287 (319)
177 cd00189 TPR Tetratricopeptide 97.7 0.00019 4.1E-09 52.4 7.1 82 435-516 2-85 (100)
178 PRK02603 photosystem I assembl 97.6 0.00028 6E-09 58.3 8.3 47 467-513 74-120 (172)
179 PF08579 RPM2: Mitochondrial r 97.6 0.001 2.2E-08 48.4 9.7 81 263-343 27-116 (120)
180 PRK10803 tol-pal system protei 97.6 0.00099 2.1E-08 58.6 11.5 105 399-503 145-255 (263)
181 PF10037 MRP-S27: Mitochondria 97.6 0.00057 1.2E-08 63.7 10.4 119 94-212 66-186 (429)
182 KOG1258 mRNA processing protei 97.6 0.077 1.7E-06 50.9 24.3 402 93-513 44-489 (577)
183 PF04840 Vps16_C: Vps16, C-ter 97.6 0.057 1.2E-06 49.2 27.9 109 335-460 181-289 (319)
184 PF14938 SNAP: Soluble NSF att 97.5 0.0018 3.9E-08 58.4 12.8 121 377-498 89-229 (282)
185 PF13281 DUF4071: Domain of un 97.5 0.015 3.2E-07 53.3 18.3 167 336-505 146-345 (374)
186 COG4700 Uncharacterized protei 97.5 0.015 3.3E-07 46.5 15.7 126 361-486 88-214 (251)
187 PLN03088 SGT1, suppressor of 97.5 0.0015 3.3E-08 60.9 12.2 89 369-461 9-98 (356)
188 PF13414 TPR_11: TPR repeat; P 97.5 0.00017 3.6E-09 49.1 4.4 50 464-513 2-51 (69)
189 KOG2041 WD40 repeat protein [G 97.5 0.12 2.5E-06 50.4 24.4 228 31-289 708-951 (1189)
190 COG3898 Uncharacterized membra 97.5 0.075 1.6E-06 48.0 25.0 241 212-461 133-391 (531)
191 CHL00033 ycf3 photosystem I as 97.5 0.00047 1E-08 56.8 7.3 101 413-513 15-120 (168)
192 PRK15331 chaperone protein Sic 97.4 0.00026 5.6E-09 55.8 5.0 93 406-501 46-140 (165)
193 PF14559 TPR_19: Tetratricopep 97.4 0.00069 1.5E-08 45.8 6.6 56 409-466 3-59 (68)
194 COG4700 Uncharacterized protei 97.4 0.036 7.9E-07 44.5 16.6 98 293-390 86-188 (251)
195 COG4235 Cytochrome c biogenesi 97.4 0.0018 3.9E-08 56.3 10.1 125 378-506 138-268 (287)
196 PF12688 TPR_5: Tetratrico pep 97.4 0.006 1.3E-07 46.2 11.7 93 368-460 7-102 (120)
197 PF13431 TPR_17: Tetratricopep 97.4 8.6E-05 1.9E-09 41.8 1.4 34 487-520 1-34 (34)
198 KOG0550 Molecular chaperone (D 97.4 0.0026 5.6E-08 57.4 11.1 148 363-516 169-338 (486)
199 PF05843 Suf: Suppressor of fo 97.4 0.0046 9.9E-08 55.5 13.0 126 263-390 3-135 (280)
200 KOG2796 Uncharacterized conser 97.3 0.037 8E-07 47.1 16.2 134 263-398 179-320 (366)
201 COG4235 Cytochrome c biogenesi 97.3 0.017 3.6E-07 50.5 14.5 108 361-472 155-267 (287)
202 PRK10866 outer membrane biogen 97.3 0.11 2.3E-06 45.5 19.9 64 264-328 35-101 (243)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.011 2.4E-07 44.8 11.9 90 266-355 6-99 (120)
204 PF13525 YfiO: Outer membrane 97.2 0.017 3.7E-07 49.1 14.2 46 471-516 147-195 (203)
205 PRK10153 DNA-binding transcrip 97.2 0.028 6.1E-07 55.0 17.1 35 292-326 333-372 (517)
206 PRK10866 outer membrane biogen 97.2 0.023 5E-07 49.6 15.1 50 241-290 43-98 (243)
207 KOG1538 Uncharacterized conser 97.2 0.037 8.1E-07 53.1 16.9 258 196-493 553-845 (1081)
208 KOG2280 Vacuolar assembly/sort 97.1 0.32 7E-06 48.0 26.1 110 364-490 686-795 (829)
209 KOG2796 Uncharacterized conser 97.1 0.035 7.6E-07 47.2 14.3 132 366-497 181-318 (366)
210 PF13424 TPR_12: Tetratricopep 97.1 0.0005 1.1E-08 48.1 3.2 61 434-494 6-75 (78)
211 PF06239 ECSIT: Evolutionarily 97.1 0.0061 1.3E-07 50.4 9.7 88 259-346 45-153 (228)
212 KOG0543 FKBP-type peptidyl-pro 97.1 0.0056 1.2E-07 55.4 10.2 119 368-508 214-334 (397)
213 KOG1538 Uncharacterized conser 97.0 0.07 1.5E-06 51.4 17.2 103 347-461 732-845 (1081)
214 PF13432 TPR_16: Tetratricopep 97.0 0.0039 8.4E-08 41.6 6.9 55 369-425 4-59 (65)
215 PRK10803 tol-pal system protei 96.9 0.0095 2.1E-07 52.5 10.3 95 365-461 146-245 (263)
216 PF06239 ECSIT: Evolutionarily 96.9 0.013 2.9E-07 48.5 10.3 88 360-448 45-153 (228)
217 KOG1130 Predicted G-alpha GTPa 96.9 0.0031 6.7E-08 56.8 7.1 276 102-390 25-343 (639)
218 KOG2280 Vacuolar assembly/sort 96.9 0.56 1.2E-05 46.4 23.6 87 398-492 685-771 (829)
219 COG1729 Uncharacterized protei 96.8 0.0094 2E-07 51.3 9.1 103 399-504 144-254 (262)
220 PF07719 TPR_2: Tetratricopept 96.8 0.003 6.5E-08 35.5 4.4 33 466-498 2-34 (34)
221 PF00515 TPR_1: Tetratricopept 96.8 0.0024 5.2E-08 36.0 3.8 33 466-498 2-34 (34)
222 PF04184 ST7: ST7 protein; In 96.8 0.072 1.6E-06 49.9 15.0 105 399-503 261-384 (539)
223 PF13525 YfiO: Outer membrane 96.8 0.22 4.8E-06 42.3 17.3 61 266-326 10-72 (203)
224 PF07079 DUF1347: Protein of u 96.8 0.46 1E-05 44.1 28.9 352 74-438 90-530 (549)
225 PF12921 ATP13: Mitochondrial 96.7 0.026 5.7E-07 43.2 9.8 51 392-442 47-97 (126)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.54 1.2E-05 43.6 25.0 75 27-102 41-117 (660)
227 PF13512 TPR_18: Tetratricopep 96.6 0.041 8.9E-07 42.6 10.4 116 371-502 19-136 (142)
228 PRK15331 chaperone protein Sic 96.6 0.09 2E-06 41.8 12.4 94 367-464 42-136 (165)
229 KOG4555 TPR repeat-containing 96.6 0.0055 1.2E-07 45.7 5.1 90 406-497 52-147 (175)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0086 1.9E-07 55.6 6.9 60 399-461 77-140 (453)
231 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.8E-07 40.2 6.3 54 370-425 3-57 (73)
232 KOG1130 Predicted G-alpha GTPa 96.4 0.04 8.7E-07 50.0 10.5 153 364-516 197-372 (639)
233 PF13281 DUF4071: Domain of un 96.4 0.18 4E-06 46.4 14.7 175 68-264 146-339 (374)
234 PF02259 FAT: FAT domain; Int 96.4 0.71 1.5E-05 43.3 19.7 150 361-513 145-306 (352)
235 COG4105 ComL DNA uptake lipopr 96.4 0.57 1.2E-05 40.3 16.6 157 342-499 45-238 (254)
236 PF03704 BTAD: Bacterial trans 96.3 0.045 9.8E-07 43.7 9.6 71 364-436 64-139 (146)
237 PRK11906 transcriptional regul 96.3 0.11 2.5E-06 48.6 13.0 122 378-501 274-408 (458)
238 COG0457 NrfG FOG: TPR repeat [ 96.3 0.66 1.4E-05 40.2 22.8 218 276-497 38-268 (291)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.22 4.8E-06 46.6 14.8 62 362-425 75-140 (453)
240 PF13424 TPR_12: Tetratricopep 96.3 0.0099 2.1E-07 41.4 4.9 61 399-459 7-72 (78)
241 PF04053 Coatomer_WDAD: Coatom 96.2 0.25 5.3E-06 47.4 15.1 132 164-320 295-426 (443)
242 PF13512 TPR_18: Tetratricopep 96.2 0.033 7.1E-07 43.1 7.5 58 443-500 20-82 (142)
243 KOG2114 Vacuolar assembly/sort 96.1 1.7 3.8E-05 43.8 28.1 220 26-259 281-519 (933)
244 PF10300 DUF3808: Protein of u 96.0 0.39 8.4E-06 46.7 16.1 117 375-493 246-375 (468)
245 PF09613 HrpB1_HrpK: Bacterial 96.0 0.031 6.6E-07 44.2 7.0 111 399-513 9-124 (160)
246 smart00299 CLH Clathrin heavy 96.0 0.55 1.2E-05 37.1 15.0 127 365-511 10-137 (140)
247 COG1729 Uncharacterized protei 96.0 0.051 1.1E-06 46.9 8.5 95 364-461 144-243 (262)
248 KOG1258 mRNA processing protei 95.9 1.8 3.9E-05 42.0 25.4 364 43-409 60-487 (577)
249 PF13181 TPR_8: Tetratricopept 95.9 0.014 3.1E-07 32.7 3.5 33 466-498 2-34 (34)
250 KOG2114 Vacuolar assembly/sort 95.8 1.5 3.3E-05 44.2 18.5 246 233-500 337-596 (933)
251 smart00299 CLH Clathrin heavy 95.7 0.76 1.6E-05 36.3 14.8 128 29-175 8-136 (140)
252 COG2976 Uncharacterized protei 95.7 0.64 1.4E-05 38.1 13.2 129 365-499 57-193 (207)
253 KOG0543 FKBP-type peptidyl-pro 95.6 0.19 4.2E-06 45.9 10.9 140 336-496 213-357 (397)
254 PF08631 SPO22: Meiosis protei 95.6 1.7 3.7E-05 39.1 22.0 18 475-492 256-273 (278)
255 PF03704 BTAD: Bacterial trans 95.5 0.14 3.1E-06 40.8 9.2 69 265-334 66-139 (146)
256 PF12921 ATP13: Mitochondrial 95.4 0.16 3.5E-06 38.9 8.8 51 426-476 45-99 (126)
257 PF04053 Coatomer_WDAD: Coatom 95.4 0.72 1.6E-05 44.3 15.0 161 269-461 269-430 (443)
258 KOG2610 Uncharacterized conser 95.4 0.35 7.6E-06 43.0 11.5 118 106-226 115-236 (491)
259 PRK11906 transcriptional regul 95.3 0.093 2E-06 49.1 8.3 105 412-516 273-389 (458)
260 PRK09687 putative lyase; Provi 95.2 2.2 4.8E-05 38.3 24.7 124 361-496 141-265 (280)
261 PF13176 TPR_7: Tetratricopept 95.1 0.034 7.4E-07 31.6 3.3 28 467-494 1-28 (36)
262 TIGR02561 HrpB1_HrpK type III 95.1 0.11 2.3E-06 40.4 6.8 95 398-496 8-108 (153)
263 KOG1585 Protein required for f 95.1 1.1 2.4E-05 38.2 12.9 205 263-490 33-252 (308)
264 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.083 1.8E-06 33.1 5.0 42 469-510 5-46 (53)
265 KOG1585 Protein required for f 95.0 2 4.3E-05 36.7 15.8 202 232-458 33-252 (308)
266 COG1747 Uncharacterized N-term 95.0 3.4 7.4E-05 39.4 18.7 159 296-461 66-233 (711)
267 COG0457 NrfG FOG: TPR repeat [ 95.0 2.1 4.7E-05 36.9 23.9 199 309-511 36-248 (291)
268 COG3118 Thioredoxin domain-con 95.0 2.2 4.9E-05 37.6 15.0 139 372-513 144-286 (304)
269 PF00637 Clathrin: Region in C 95.0 0.0033 7.1E-08 50.1 -1.8 130 32-179 11-140 (143)
270 KOG2062 26S proteasome regulat 94.9 4.5 9.8E-05 40.4 23.1 139 371-514 510-657 (929)
271 PF10300 DUF3808: Protein of u 94.9 0.99 2.2E-05 44.0 14.4 145 368-515 194-356 (468)
272 PF04097 Nic96: Nup93/Nic96; 94.8 5.4 0.00012 40.6 19.9 48 93-142 111-158 (613)
273 KOG4648 Uncharacterized conser 94.7 0.083 1.8E-06 46.8 6.0 100 406-508 106-208 (536)
274 KOG1941 Acetylcholine receptor 94.6 0.76 1.7E-05 41.4 11.6 163 262-424 84-273 (518)
275 PF09613 HrpB1_HrpK: Bacterial 94.6 1.1 2.3E-05 35.7 11.3 114 365-487 10-131 (160)
276 PF13174 TPR_6: Tetratricopept 94.5 0.067 1.4E-06 29.5 3.4 31 468-498 3-33 (33)
277 PF13170 DUF4003: Protein of u 94.4 0.61 1.3E-05 42.0 11.0 143 26-170 55-223 (297)
278 KOG3941 Intermediate in Toll s 94.4 0.45 9.6E-06 41.3 9.4 73 275-347 86-174 (406)
279 PRK11619 lytic murein transgly 94.4 6.8 0.00015 39.9 29.0 117 374-493 253-374 (644)
280 KOG1941 Acetylcholine receptor 94.3 0.54 1.2E-05 42.3 10.0 218 242-459 18-272 (518)
281 COG4649 Uncharacterized protei 94.1 2.5 5.4E-05 34.0 15.6 139 372-511 68-212 (221)
282 KOG4555 TPR repeat-containing 94.1 0.33 7.2E-06 36.6 7.1 91 369-461 50-143 (175)
283 KOG3941 Intermediate in Toll s 94.1 0.67 1.5E-05 40.2 9.8 97 352-449 55-174 (406)
284 KOG4234 TPR repeat-containing 94.1 0.46 1E-05 38.9 8.3 96 407-504 105-207 (271)
285 PF10602 RPN7: 26S proteasome 94.1 1.6 3.5E-05 36.0 12.0 98 364-461 38-141 (177)
286 PF13428 TPR_14: Tetratricopep 94.0 0.079 1.7E-06 31.8 3.2 25 436-460 4-28 (44)
287 PF09205 DUF1955: Domain of un 93.9 2.2 4.7E-05 32.6 13.5 134 271-425 12-148 (161)
288 KOG1920 IkappaB kinase complex 93.9 10 0.00022 40.3 22.8 160 178-360 894-1055(1265)
289 KOG1586 Protein required for f 93.9 2.7 5.8E-05 35.6 12.5 19 479-497 209-227 (288)
290 PF00637 Clathrin: Region in C 93.8 0.22 4.8E-06 39.5 6.3 130 134-277 12-141 (143)
291 KOG2396 HAT (Half-A-TPR) repea 93.7 6.6 0.00014 37.4 29.3 395 111-516 88-547 (568)
292 PF04184 ST7: ST7 protein; In 93.6 7.1 0.00015 37.4 19.5 60 365-424 262-322 (539)
293 KOG3364 Membrane protein invol 93.2 0.59 1.3E-05 35.6 7.1 84 430-513 29-119 (149)
294 KOG0890 Protein kinase of the 93.2 20 0.00044 41.4 22.6 62 433-494 1670-1731(2382)
295 PF07035 Mic1: Colon cancer-as 93.2 3.9 8.4E-05 33.1 13.8 36 152-187 17-52 (167)
296 PF07035 Mic1: Colon cancer-as 93.0 4.1 9E-05 32.9 12.2 99 114-226 14-116 (167)
297 PRK09687 putative lyase; Provi 93.0 6.6 0.00014 35.3 24.4 220 61-289 35-262 (280)
298 COG3118 Thioredoxin domain-con 93.0 6.2 0.00013 35.0 18.0 116 305-424 143-263 (304)
299 COG4105 ComL DNA uptake lipopr 92.9 5.7 0.00012 34.4 19.0 57 270-326 43-101 (254)
300 KOG1586 Protein required for f 92.9 3.8 8.2E-05 34.8 12.0 23 476-498 165-187 (288)
301 COG2909 MalT ATP-dependent tra 92.7 14 0.00029 38.2 23.9 190 307-496 426-649 (894)
302 PF13374 TPR_10: Tetratricopep 92.6 0.29 6.3E-06 28.7 4.2 28 466-493 3-30 (42)
303 COG4649 Uncharacterized protei 92.5 1.3 2.9E-05 35.4 8.4 134 93-227 58-195 (221)
304 PF10602 RPN7: 26S proteasome 92.4 1.9 4.1E-05 35.6 10.0 95 95-191 37-140 (177)
305 COG1747 Uncharacterized N-term 92.4 11 0.00023 36.3 18.8 176 329-511 64-251 (711)
306 PF13176 TPR_7: Tetratricopept 92.4 0.39 8.5E-06 27.2 4.3 24 365-388 2-25 (36)
307 KOG2610 Uncharacterized conser 92.2 8.6 0.00019 34.7 16.0 112 274-387 116-234 (491)
308 COG3629 DnrI DNA-binding trans 92.2 1.9 4E-05 38.2 10.0 77 364-442 155-236 (280)
309 PF13170 DUF4003: Protein of u 92.2 3.7 8.1E-05 37.1 12.2 65 378-443 159-227 (297)
310 KOG1464 COP9 signalosome, subu 92.2 7.4 0.00016 33.8 17.7 222 263-490 67-328 (440)
311 smart00028 TPR Tetratricopepti 92.2 0.29 6.3E-06 26.2 3.7 32 467-498 3-34 (34)
312 PRK13800 putative oxidoreducta 92.1 20 0.00043 38.6 25.8 256 219-493 624-880 (897)
313 PF09205 DUF1955: Domain of un 91.9 4.6 9.9E-05 30.9 12.4 61 434-494 87-149 (161)
314 PF00515 TPR_1: Tetratricopept 91.9 0.46 1E-05 26.3 4.2 27 364-390 3-29 (34)
315 KOG1920 IkappaB kinase complex 91.5 22 0.00048 38.0 20.4 80 369-460 972-1053(1265)
316 PF08631 SPO22: Meiosis protei 91.5 10 0.00022 34.1 22.7 118 241-359 4-149 (278)
317 COG4785 NlpI Lipoprotein NlpI, 91.1 8.4 0.00018 32.4 12.3 27 263-289 239-265 (297)
318 KOG4570 Uncharacterized conser 90.9 1.7 3.6E-05 38.6 8.2 103 56-159 57-165 (418)
319 KOG1550 Extracellular protein 90.3 22 0.00047 35.8 18.2 84 242-326 261-358 (552)
320 PF07719 TPR_2: Tetratricopept 90.2 0.82 1.8E-05 25.2 4.2 27 364-390 3-29 (34)
321 PF02284 COX5A: Cytochrome c o 90.1 2.7 5.7E-05 30.4 7.2 60 380-441 28-87 (108)
322 KOG0890 Protein kinase of the 90.0 44 0.00095 39.0 28.5 296 204-516 1388-1719(2382)
323 TIGR02561 HrpB1_HrpK type III 89.9 7.4 0.00016 30.6 10.1 51 373-425 21-72 (153)
324 PF02259 FAT: FAT domain; Int 89.6 18 0.00039 33.8 16.1 63 431-493 144-212 (352)
325 PF13431 TPR_17: Tetratricopep 89.0 0.43 9.4E-06 26.6 2.3 20 433-452 13-32 (34)
326 PRK11619 lytic murein transgly 89.0 29 0.00064 35.5 34.4 205 273-491 253-465 (644)
327 KOG0276 Vesicle coat complex C 88.9 11 0.00024 37.0 12.4 151 241-423 597-747 (794)
328 KOG4234 TPR repeat-containing 88.9 0.36 7.9E-06 39.5 2.6 74 441-514 103-183 (271)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 88.7 4.4 9.5E-05 29.0 7.4 63 377-441 22-84 (103)
330 smart00386 HAT HAT (Half-A-TPR 88.7 0.7 1.5E-05 25.1 3.1 31 479-509 1-31 (33)
331 KOG1550 Extracellular protein 88.7 29 0.00062 35.0 17.8 175 145-327 228-428 (552)
332 TIGR02508 type_III_yscG type I 88.5 7.4 0.00016 28.0 9.1 59 238-299 47-105 (115)
333 KOG2066 Vacuolar assembly/sort 88.5 31 0.00067 35.2 26.2 102 101-211 363-467 (846)
334 COG3629 DnrI DNA-binding trans 88.3 5.3 0.00012 35.4 9.6 58 232-289 155-215 (280)
335 KOG0276 Vesicle coat complex C 88.3 6.8 0.00015 38.3 10.7 153 175-359 597-749 (794)
336 PF06552 TOM20_plant: Plant sp 88.2 1.6 3.4E-05 35.4 5.7 25 481-505 96-120 (186)
337 KOG4648 Uncharacterized conser 87.7 0.6 1.3E-05 41.7 3.4 75 440-514 104-180 (536)
338 KOG3807 Predicted membrane pro 87.4 9.5 0.00021 34.3 10.4 120 368-507 281-404 (556)
339 KOG2066 Vacuolar assembly/sort 86.8 40 0.00086 34.5 25.9 170 171-362 363-536 (846)
340 PF13181 TPR_8: Tetratricopept 86.6 1.3 2.8E-05 24.4 3.4 27 364-390 3-29 (34)
341 PRK10941 hypothetical protein; 86.6 2.5 5.4E-05 37.5 6.7 71 436-506 184-256 (269)
342 COG4455 ImpE Protein of avirul 86.5 19 0.00041 30.5 11.2 125 365-501 4-141 (273)
343 COG4785 NlpI Lipoprotein NlpI, 86.0 20 0.00043 30.3 14.1 158 331-496 99-268 (297)
344 KOG2063 Vacuolar assembly/sort 85.8 51 0.0011 34.8 16.4 28 95-122 505-532 (877)
345 PF10345 Cohesin_load: Cohesin 85.7 45 0.00098 34.1 30.3 162 64-226 60-252 (608)
346 KOG2396 HAT (Half-A-TPR) repea 85.4 36 0.00079 32.8 25.0 390 92-499 103-565 (568)
347 PRK15180 Vi polysaccharide bio 85.3 8.1 0.00018 36.6 9.3 121 373-497 300-423 (831)
348 PRK10941 hypothetical protein; 85.2 2.2 4.9E-05 37.8 5.7 49 468-516 184-232 (269)
349 PF13374 TPR_10: Tetratricopep 85.1 2.6 5.6E-05 24.4 4.4 27 364-390 4-30 (42)
350 PRK12798 chemotaxis protein; R 85.0 35 0.00075 32.2 21.5 164 344-510 125-301 (421)
351 KOG4507 Uncharacterized conser 84.6 2.1 4.5E-05 41.4 5.4 101 409-510 619-721 (886)
352 KOG4279 Serine/threonine prote 84.1 19 0.00042 36.3 11.6 191 263-506 203-407 (1226)
353 PF11207 DUF2989: Protein of u 83.9 11 0.00024 31.4 8.7 73 278-351 123-198 (203)
354 KOG4570 Uncharacterized conser 83.9 6.6 0.00014 35.0 7.7 48 377-424 115-162 (418)
355 PF07721 TPR_4: Tetratricopept 83.8 2 4.3E-05 22.1 3.0 18 439-456 7-24 (26)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 83.6 8.6 0.00019 27.5 6.8 60 279-339 25-84 (103)
357 KOG1464 COP9 signalosome, subu 82.4 34 0.00073 30.0 16.0 118 273-390 39-173 (440)
358 PF02284 COX5A: Cytochrome c o 81.9 7.3 0.00016 28.2 6.0 46 113-158 29-74 (108)
359 COG5159 RPN6 26S proteasome re 81.9 28 0.0006 30.8 10.5 52 266-317 8-66 (421)
360 PF09670 Cas_Cas02710: CRISPR- 81.7 27 0.00059 33.1 11.7 54 371-425 140-197 (379)
361 cd00280 TRFH Telomeric Repeat 81.6 4.7 0.0001 32.8 5.6 38 473-511 119-156 (200)
362 PF04910 Tcf25: Transcriptiona 81.5 47 0.001 31.2 14.1 57 267-323 109-166 (360)
363 PF14863 Alkyl_sulf_dimr: Alky 81.2 7.3 0.00016 30.6 6.5 63 449-514 57-119 (141)
364 PF07720 TPR_3: Tetratricopept 79.8 6.2 0.00013 22.4 4.2 32 467-498 3-36 (36)
365 COG4976 Predicted methyltransf 79.5 3.6 7.7E-05 34.8 4.4 60 442-501 4-65 (287)
366 COG2976 Uncharacterized protei 79.3 35 0.00077 28.4 14.8 88 305-392 98-189 (207)
367 PF11846 DUF3366: Domain of un 79.1 6.3 0.00014 33.1 6.1 35 462-496 141-175 (193)
368 PF11207 DUF2989: Protein of u 78.4 26 0.00057 29.3 9.0 73 146-219 123-198 (203)
369 COG4941 Predicted RNA polymera 78.3 40 0.00086 30.7 10.6 126 377-507 271-407 (415)
370 TIGR03504 FimV_Cterm FimV C-te 78.1 6.6 0.00014 23.5 4.1 24 368-391 5-28 (44)
371 PF13174 TPR_6: Tetratricopept 77.5 3.2 7E-05 22.4 2.7 22 369-390 7-28 (33)
372 PF04910 Tcf25: Transcriptiona 77.4 64 0.0014 30.3 13.0 56 369-424 110-166 (360)
373 cd08819 CARD_MDA5_2 Caspase ac 77.3 19 0.00042 25.3 6.7 66 47-114 21-86 (88)
374 KOG2300 Uncharacterized conser 77.3 72 0.0016 30.8 30.9 175 246-423 298-511 (629)
375 TIGR03504 FimV_Cterm FimV C-te 76.0 7.1 0.00015 23.3 3.9 25 267-291 5-29 (44)
376 PRK13800 putative oxidoreducta 75.9 1.2E+02 0.0027 32.8 26.0 256 198-473 634-892 (897)
377 PF13929 mRNA_stabil: mRNA sta 75.9 59 0.0013 29.1 15.5 112 78-189 143-263 (292)
378 PF07163 Pex26: Pex26 protein; 75.8 41 0.00089 29.8 9.8 86 267-354 89-181 (309)
379 KOG4642 Chaperone-dependent E3 75.5 26 0.00057 30.1 8.4 117 341-459 20-143 (284)
380 PF10579 Rapsyn_N: Rapsyn N-te 74.7 11 0.00024 25.9 4.9 43 376-418 20-64 (80)
381 PF07163 Pex26: Pex26 protein; 73.4 48 0.001 29.4 9.6 83 338-420 90-181 (309)
382 PF10579 Rapsyn_N: Rapsyn N-te 73.2 2.1 4.6E-05 29.2 1.3 54 440-494 14-72 (80)
383 PF10345 Cohesin_load: Cohesin 72.0 1.2E+02 0.0027 31.0 30.3 163 93-256 58-251 (608)
384 KOG0376 Serine-threonine phosp 71.6 8.1 0.00018 36.7 5.1 50 373-424 15-65 (476)
385 PF13762 MNE1: Mitochondrial s 71.4 28 0.00061 27.4 7.2 79 64-142 40-128 (145)
386 cd00280 TRFH Telomeric Repeat 71.0 22 0.00048 29.1 6.7 22 442-463 120-141 (200)
387 TIGR02508 type_III_yscG type I 70.9 38 0.00082 24.6 8.6 78 44-124 21-98 (115)
388 KOG2581 26S proteasome regulat 70.7 96 0.0021 29.2 11.7 124 375-499 139-281 (493)
389 COG4455 ImpE Protein of avirul 70.6 18 0.0004 30.6 6.3 73 400-474 4-81 (273)
390 KOG2063 Vacuolar assembly/sort 70.3 1.5E+02 0.0033 31.5 16.1 28 64-91 505-532 (877)
391 KOG4077 Cytochrome c oxidase, 69.8 27 0.00059 26.5 6.4 58 381-440 68-125 (149)
392 cd08819 CARD_MDA5_2 Caspase ac 69.7 36 0.00078 24.0 6.8 37 343-380 48-84 (88)
393 COG2909 MalT ATP-dependent tra 69.6 1.5E+02 0.0033 31.1 25.9 220 140-359 426-687 (894)
394 PF11846 DUF3366: Domain of un 69.5 16 0.00035 30.7 6.2 30 430-459 141-170 (193)
395 KOG3824 Huntingtin interacting 69.2 6.3 0.00014 34.9 3.6 63 444-506 127-191 (472)
396 COG5191 Uncharacterized conser 68.8 8 0.00017 34.4 4.1 76 429-504 103-181 (435)
397 COG2912 Uncharacterized conser 68.4 7.7 0.00017 34.0 4.0 40 475-514 191-230 (269)
398 KOG2422 Uncharacterized conser 68.4 1.3E+02 0.0028 29.9 13.9 56 369-424 349-405 (665)
399 PF06552 TOM20_plant: Plant sp 68.2 21 0.00045 29.3 6.0 61 378-443 51-123 (186)
400 PHA02537 M terminase endonucle 68.0 73 0.0016 27.6 9.6 33 466-498 170-211 (230)
401 PF10255 Paf67: RNA polymerase 67.9 41 0.00089 31.9 8.8 57 232-288 124-191 (404)
402 KOG2471 TPR repeat-containing 67.8 96 0.0021 30.0 10.9 41 106-146 29-69 (696)
403 KOG0545 Aryl-hydrocarbon recep 67.6 45 0.00098 28.9 8.1 70 436-505 233-304 (329)
404 KOG0545 Aryl-hydrocarbon recep 67.3 13 0.00028 32.0 4.9 72 440-511 185-276 (329)
405 KOG4642 Chaperone-dependent E3 67.0 69 0.0015 27.7 9.0 118 305-424 19-144 (284)
406 PF04097 Nic96: Nup93/Nic96; 66.7 1.6E+02 0.0035 30.3 16.1 85 337-424 264-354 (613)
407 COG3947 Response regulator con 66.7 21 0.00046 31.6 6.2 56 436-491 282-339 (361)
408 PF09986 DUF2225: Uncharacteri 66.6 62 0.0014 27.7 9.1 22 439-460 171-192 (214)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 66.5 57 0.0012 25.1 8.1 43 380-422 81-124 (126)
410 PF14561 TPR_20: Tetratricopep 66.3 38 0.00083 24.1 6.6 49 466-514 23-73 (90)
411 KOG3824 Huntingtin interacting 65.5 9.6 0.00021 33.9 4.0 50 408-460 127-177 (472)
412 KOG3364 Membrane protein invol 65.0 64 0.0014 25.1 8.2 70 394-465 29-104 (149)
413 KOG2300 Uncharacterized conser 64.7 1.4E+02 0.0031 29.0 30.0 174 342-515 334-541 (629)
414 COG3947 Response regulator con 64.5 16 0.00035 32.4 5.1 48 468-515 282-329 (361)
415 PF14853 Fis1_TPR_C: Fis1 C-te 64.3 28 0.0006 21.9 4.9 33 368-402 7-39 (53)
416 PHA02875 ankyrin repeat protei 64.1 1.4E+02 0.003 28.7 13.4 198 114-320 15-223 (413)
417 KOG1308 Hsp70-interacting prot 64.0 2.4 5.2E-05 38.1 0.2 88 407-496 124-213 (377)
418 PF13762 MNE1: Mitochondrial s 63.0 74 0.0016 25.1 9.5 50 361-410 78-128 (145)
419 KOG4077 Cytochrome c oxidase, 62.8 18 0.00039 27.4 4.4 37 155-191 75-111 (149)
420 PF08424 NRDE-2: NRDE-2, neces 61.8 1.3E+02 0.0029 27.7 13.8 114 378-495 47-184 (321)
421 PF01239 PPTA: Protein prenylt 61.1 12 0.00027 20.0 2.7 29 484-512 2-30 (31)
422 COG0735 Fur Fe2+/Zn2+ uptake r 60.9 52 0.0011 26.1 7.1 63 116-179 8-70 (145)
423 PF12862 Apc5: Anaphase-promot 60.7 21 0.00046 25.7 4.6 24 471-494 47-70 (94)
424 PF10366 Vps39_1: Vacuolar sor 60.4 66 0.0014 23.9 7.2 27 96-122 41-67 (108)
425 KOG4507 Uncharacterized conser 58.7 56 0.0012 32.3 7.9 84 108-192 621-704 (886)
426 PF14689 SPOB_a: Sensor_kinase 57.7 26 0.00056 22.9 4.1 26 399-424 25-50 (62)
427 PF09477 Type_III_YscG: Bacter 57.6 76 0.0016 23.5 8.0 79 43-124 21-99 (116)
428 PF11663 Toxin_YhaV: Toxin wit 57.5 16 0.00034 28.2 3.4 33 105-139 106-138 (140)
429 PF09986 DUF2225: Uncharacteri 56.2 1.1E+02 0.0023 26.4 8.7 98 409-506 89-207 (214)
430 PF11663 Toxin_YhaV: Toxin wit 55.1 17 0.00036 28.0 3.2 34 270-305 104-137 (140)
431 PF10366 Vps39_1: Vacuolar sor 54.8 87 0.0019 23.3 7.7 27 263-289 41-67 (108)
432 TIGR02270 conserved hypothetic 54.6 2.1E+02 0.0045 27.6 23.1 33 201-233 102-134 (410)
433 PF12968 DUF3856: Domain of Un 53.3 98 0.0021 23.5 7.4 60 434-493 56-128 (144)
434 KOG0551 Hsp90 co-chaperone CNS 52.5 44 0.00096 30.4 5.9 71 441-511 89-165 (390)
435 PF11768 DUF3312: Protein of u 52.2 2.1E+02 0.0045 28.4 10.6 45 438-485 499-543 (545)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 52.0 1.1E+02 0.0023 23.6 7.5 43 415-458 81-124 (126)
437 KOG2659 LisH motif-containing 50.6 1.6E+02 0.0036 25.3 11.3 20 404-423 71-90 (228)
438 PF11817 Foie-gras_1: Foie gra 49.6 52 0.0011 29.0 6.1 19 440-458 185-203 (247)
439 cd08326 CARD_CASP9 Caspase act 49.3 57 0.0012 22.9 5.0 63 47-113 18-80 (84)
440 KOG2297 Predicted translation 49.1 2.1E+02 0.0045 26.0 12.1 16 364-379 323-338 (412)
441 PF11848 DUF3368: Domain of un 49.0 60 0.0013 19.8 5.2 32 272-303 13-44 (48)
442 KOG1308 Hsp70-interacting prot 48.5 11 0.00024 34.2 1.7 117 372-493 124-243 (377)
443 cd08326 CARD_CASP9 Caspase act 48.3 32 0.00069 24.2 3.6 32 244-275 44-75 (84)
444 PF15469 Sec5: Exocyst complex 48.0 1.6E+02 0.0035 24.4 12.2 111 373-505 68-179 (182)
445 KOG0292 Vesicle coat complex C 47.6 2.1E+02 0.0046 30.2 10.2 130 340-493 652-781 (1202)
446 PF11251 DUF3050: Protein of u 47.5 1.8E+02 0.004 25.0 11.1 70 429-498 121-191 (232)
447 PF09477 Type_III_YscG: Bacter 47.2 1.2E+02 0.0025 22.6 9.2 79 142-227 19-97 (116)
448 KOG0687 26S proteasome regulat 47.1 2.3E+02 0.005 26.0 9.3 97 398-496 105-212 (393)
449 PRK10564 maltose regulon perip 46.7 47 0.001 29.9 5.2 41 363-403 258-298 (303)
450 PF11817 Foie-gras_1: Foie gra 45.9 64 0.0014 28.4 6.1 59 399-457 180-242 (247)
451 PF10255 Paf67: RNA polymerase 45.8 1.4E+02 0.0031 28.5 8.4 53 336-388 127-190 (404)
452 PRK10564 maltose regulon perip 45.6 30 0.00065 31.0 3.8 37 96-132 259-295 (303)
453 KOG0530 Protein farnesyltransf 44.6 1.3E+02 0.0027 26.7 7.1 66 449-514 94-162 (318)
454 PF12926 MOZART2: Mitotic-spin 44.0 1.1E+02 0.0024 21.5 6.1 63 126-190 7-69 (88)
455 PF09868 DUF2095: Uncharacteri 43.8 78 0.0017 23.5 5.0 43 31-74 64-106 (128)
456 PF14689 SPOB_a: Sensor_kinase 43.8 40 0.00088 22.0 3.4 26 264-289 26-51 (62)
457 PF02184 HAT: HAT (Half-A-TPR) 43.3 57 0.0012 17.9 3.4 22 378-401 3-24 (32)
458 KOG4279 Serine/threonine prote 43.2 3.7E+02 0.0079 28.0 10.9 191 314-516 181-399 (1226)
459 PF00244 14-3-3: 14-3-3 protei 43.0 2.3E+02 0.005 24.8 10.5 58 266-323 6-64 (236)
460 PRK13184 pknD serine/threonine 42.8 1.1E+02 0.0024 33.0 8.0 97 405-501 483-588 (932)
461 COG0735 Fur Fe2+/Zn2+ uptake r 42.7 1.5E+02 0.0032 23.5 7.1 61 285-346 10-70 (145)
462 KOG3636 Uncharacterized conser 41.5 1.1E+02 0.0024 29.0 6.8 32 56-87 176-207 (669)
463 TIGR02270 conserved hypothetic 41.5 3.3E+02 0.0072 26.2 23.7 99 171-273 45-143 (410)
464 KOG0991 Replication factor C, 41.1 1.8E+02 0.0039 25.3 7.4 87 38-127 169-271 (333)
465 COG4259 Uncharacterized protei 41.1 98 0.0021 22.5 5.0 34 472-505 79-112 (121)
466 KOG2297 Predicted translation 40.0 2.9E+02 0.0063 25.1 9.3 17 232-248 323-339 (412)
467 KOG1114 Tripeptidyl peptidase 39.9 5.1E+02 0.011 27.9 13.4 70 379-448 1213-1282(1304)
468 KOG0687 26S proteasome regulat 39.9 2.5E+02 0.0055 25.8 8.4 90 232-323 106-208 (393)
469 KOG2908 26S proteasome regulat 39.7 2.8E+02 0.0061 25.6 8.8 87 332-418 76-178 (380)
470 PF04762 IKI3: IKI3 family; I 38.6 5.7E+02 0.012 28.0 13.7 57 204-260 699-763 (928)
471 PF12862 Apc5: Anaphase-promot 38.4 1.5E+02 0.0032 21.2 7.4 19 406-424 50-68 (94)
472 PF09670 Cas_Cas02710: CRISPR- 38.4 3.6E+02 0.0078 25.7 12.2 55 270-325 140-198 (379)
473 cd08332 CARD_CASP2 Caspase act 38.2 96 0.0021 22.1 4.9 59 47-109 22-80 (90)
474 PF10516 SHNi-TPR: SHNi-TPR; 38.2 68 0.0015 18.5 3.3 28 467-494 3-30 (38)
475 KOG0686 COP9 signalosome, subu 38.2 3.6E+02 0.0078 25.7 12.2 63 165-227 151-215 (466)
476 PRK11639 zinc uptake transcrip 37.7 1.5E+02 0.0033 24.2 6.6 58 122-180 19-76 (169)
477 PF12796 Ank_2: Ankyrin repeat 37.6 1.4E+02 0.0029 20.8 5.8 13 75-87 6-18 (89)
478 cd02682 MIT_AAA_Arch MIT: doma 37.2 1.1E+02 0.0025 20.9 4.7 32 475-506 16-54 (75)
479 PF12583 TPPII_N: Tripeptidyl 37.0 1.3E+02 0.0027 23.3 5.3 42 473-514 84-125 (139)
480 PF13934 ELYS: Nuclear pore co 36.9 2.8E+02 0.0061 24.0 12.4 71 403-477 114-184 (226)
481 PF14669 Asp_Glu_race_2: Putat 36.6 2.6E+02 0.0056 23.5 13.9 57 402-458 137-206 (233)
482 PRK09462 fur ferric uptake reg 36.0 2.2E+02 0.0048 22.6 7.2 60 120-180 8-68 (148)
483 COG2912 Uncharacterized conser 35.4 1.4E+02 0.0031 26.5 6.3 67 439-505 187-255 (269)
484 PRK11639 zinc uptake transcrip 35.3 1.7E+02 0.0036 24.0 6.5 59 288-347 18-76 (169)
485 COG0790 FOG: TPR repeat, SEL1 35.2 3.4E+02 0.0073 24.5 17.6 146 347-497 93-269 (292)
486 KOG1498 26S proteasome regulat 35.1 4E+02 0.0086 25.3 15.2 56 406-461 180-240 (439)
487 PF13929 mRNA_stabil: mRNA sta 34.8 3.5E+02 0.0075 24.5 19.7 66 393-458 198-263 (292)
488 PF07219 HemY_N: HemY protein 34.7 60 0.0013 24.1 3.5 37 477-513 71-107 (108)
489 COG5108 RPO41 Mitochondrial DN 34.5 2.6E+02 0.0056 28.5 8.4 43 204-246 33-81 (1117)
490 cd07153 Fur_like Ferric uptake 34.4 1.2E+02 0.0025 22.7 5.2 49 32-80 4-52 (116)
491 KOG0530 Protein farnesyltransf 33.6 3.5E+02 0.0075 24.1 11.7 170 341-513 53-236 (318)
492 PRK15180 Vi polysaccharide bio 33.6 4.6E+02 0.01 25.6 25.5 117 41-160 302-422 (831)
493 PF01475 FUR: Ferric uptake re 33.5 1E+02 0.0022 23.3 4.8 49 32-80 11-59 (120)
494 PRK09462 fur ferric uptake reg 33.3 2.5E+02 0.0053 22.3 7.6 59 287-346 8-67 (148)
495 PF04190 DUF410: Protein of un 33.2 3.5E+02 0.0076 24.1 19.8 159 242-426 2-170 (260)
496 COG5187 RPN7 26S proteasome re 33.1 3E+02 0.0064 24.8 7.7 149 195-345 77-241 (412)
497 COG4003 Uncharacterized protei 33.0 1.5E+02 0.0032 20.6 4.6 37 32-69 35-71 (98)
498 PF13934 ELYS: Nuclear pore co 32.9 3.3E+02 0.0071 23.6 15.2 94 174-273 88-184 (226)
499 PF10475 DUF2450: Protein of u 32.9 3.8E+02 0.0082 24.3 11.3 52 337-390 104-155 (291)
500 TIGR02710 CRISPR-associated pr 32.6 4.4E+02 0.0096 25.0 11.6 53 370-422 138-196 (380)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-73 Score=588.34 Aligned_cols=504 Identities=31% Similarity=0.501 Sum_probs=478.8
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|..+|..|...++.|+..+++.++..+...+++..+.+++..+.+.|+.|+..++++++.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888899999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------- 227 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 227 (520)
|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 9999999999999999999999997 45788888888888888888888888888742
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 010031 228 --------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 228 --------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 287 (520)
++..+|+.|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|+.++|+.+|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566888889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 010031 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (520)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (520)
.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||+
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~ 559 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence 86 5899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..|+.|+..+|+.++.+|.+.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999977899999999999999999999
Q ss_pred ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++++|.+++++|..+||..+|++|+.+|..+|+.+.|+...+++++++|+++..+..++++|...|+.+
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 999999999999889999999999999999999999999999999999999999999999999998854
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-67 Score=547.21 Aligned_cols=499 Identities=26% Similarity=0.415 Sum_probs=443.9
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|..++..|...+.+|+..++..++..+...+.++.+.+++..+.+.+..++..++++++..|++.|+++.|.++|
T Consensus 65 g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999898888888
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------- 227 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 227 (520)
++.|+.+|++.|+++.|.++|++|.. ||..+||.+|.+|++.|+.++|..+|++|.+
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 88888888888888888888888863 4666777777777777777777777666632
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 010031 228 --------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 228 --------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 287 (520)
||..+|++++.+|++.|++++|.++|++|..+|+.+|+.++.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 010031 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (520)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (520)
.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|+.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+. +.|+.++..+++.|+.+|.++|
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcC
Confidence 99999999999999999999986 599999999999999999999999999999888 4678777777777777777777
Q ss_pred ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcchhHHHHhhhhhccC
Q 010031 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS--LNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++++|.++|+++ +||..+|++++.+|.++|+.++|.++|++|.+ ..|+. .++..+..++.+.|+
T Consensus 539 ~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 539 RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM 604 (857)
T ss_pred CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence 777777777776 56777777777777777777777777777765 34543 334444455555554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-66 Score=522.94 Aligned_cols=484 Identities=14% Similarity=0.202 Sum_probs=447.7
Q ss_pred CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCC-CCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHH
Q 010031 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103 (520)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 103 (520)
+++.+.+..+...+.++|+++.|.++++.|.+.|+ .++...++.++..|.+.|.+++|..+|+.|..|+..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667788888888899999999999999999995 56778888999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 183 (520)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 3899999999999999999999999999998
Q ss_pred CCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhH
Q 010031 258 EKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333 (520)
Q Consensus 258 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (520)
+.+ ..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 654 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985 489999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh----cc-------------------CChHHHHHHHhhCCC---CC
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS----RV-------------------GQVDKALNFINKMPE---TP 463 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~~---~~ 463 (520)
.|++++|.+++++|. +.|+.||..+|+.++..+. ++ +..++|..+|++|.. .|
T Consensus 767 ~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999998 5899999999999986543 22 224679999999986 69
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCCcchhHHHHhhh
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCS-LNLSIPQAMSYCQTFM 509 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~ 509 (520)
|..+|+.++.++.+.+..+.+..+++.+.. -.+.+...|..+...+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 999999999888888999988888877632 2333444555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-67 Score=528.23 Aligned_cols=453 Identities=25% Similarity=0.409 Sum_probs=438.8
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 134 (520)
..+...+++++..+.+.|++++|+++|+.|.. ++..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34556899999999999999999999998853 6889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC
Q 010031 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (520)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 214 (520)
++..|++.|+++.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999954 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 215 LRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 215 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
.+.+.+++..+.+ +|..+|++|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999887765 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHH
Q 010031 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370 (520)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 370 (520)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|+++|++++|.++|++|.++|..+||.||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.++.|+.|+..+|+.++.+|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999877899999999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|.+++++|..+|+..+|++++.+|..+|+++.|..++++++++.|+++..|..+..+|.+.|+.+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999989999999999999999999999999999999999999999999999999999854
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7e-65 Score=516.05 Aligned_cols=485 Identities=15% Similarity=0.195 Sum_probs=451.9
Q ss_pred cchhhhhhcccccccCCC-CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHK-PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
+++++|..+|+.|...++ +++...+..++..+...|.++.|..++..|.. |+..+|+.++.+|++.|+++.|.++
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 788999999999998885 46667778899999999999999999988864 8999999999999999999999999
Q ss_pred hcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 010031 86 FDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161 (520)
Q Consensus 86 ~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (520)
|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 999864 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHH
Q 010031 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPE--KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235 (520)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ 235 (520)
||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+ |+..+|+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999976 67899999999999999999999999999999987 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 010031 236 LIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (520)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 311 (520)
+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999985 57789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (520)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 387 (520)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.+++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864 8999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc----c-------------------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 388 MMYSGTEPDGTVFLAILTACWY----S-------------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 388 ~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|. ..|+.||..+|+.++.++.
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999876542 1 12467999999999 5899999999999999999
Q ss_pred ccCChHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCC
Q 010031 445 RVGQVDKALNFINKMPE---TPDFVIWGALFCACRTHKDTKIAKIALQSSCS--LNLSI 498 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 498 (520)
+.+..+.+..+++.|.. .|+..+|++++.++.+. .++|..++++|.+ +.|+-
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99999999999998865 47788999999998432 4689999999986 45653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-59 Score=476.01 Aligned_cols=454 Identities=15% Similarity=0.144 Sum_probs=426.7
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhC-CCCChHHHHHHHHHHhcCCChHHHHHHhcccC----CCCcchHHHHHHH
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHN-LFASSRITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRG 103 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~ 103 (520)
.+.+.++..+...|+++.|.++++.+...+ ..|+..+|+.++.++++.++++.|.+++..|. .||..+||.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 477888999999999999999999998765 68999999999999999999999999998875 3899999999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 183 (520)
|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC----CC
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP----EK 259 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 259 (520)
.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+|++++.+|++.|+.++|.++|++|. .+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 46
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
|..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|. .+|..+|+.+|.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999986 478899999999
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCcHH
Q 010031 340 MYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVK 414 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~ 414 (520)
+|++.|+.++|.++|++|.+ ||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999875 8999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|.+++++|. +.|+..+|+.++.+|...|+++.|..+++++.. .| +..+|..++..|.+.|++++|.+++++|.
T Consensus 480 eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 480 EAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999998763 589999999999999999999999999998765 45 46799999999999999999999999997
Q ss_pred cC
Q 010031 493 SL 494 (520)
Q Consensus 493 ~~ 494 (520)
+.
T Consensus 556 ~~ 557 (697)
T PLN03081 556 RK 557 (697)
T ss_pred Hc
Confidence 54
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.2e-33 Score=295.98 Aligned_cols=500 Identities=12% Similarity=0.065 Sum_probs=312.2
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|...+..+.... +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.|
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56666666666655433 3344455566666666666666666666665543 223444445555555555555555555
Q ss_pred cccCC-------------------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 87 DHFTP-------------------------------------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 87 ~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
+.... .+...|..+...+...|++++|.+.|+++.+.. +.+.
T Consensus 421 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 499 (899)
T TIGR02917 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFF 499 (899)
T ss_pred HHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcH
Confidence 44322 233445555555555555555555555554422 1122
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHH
Q 010031 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (520)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (520)
..+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 234444445555555555555555555543 2344455555555556666666666665555443 33445555566666
Q ss_pred HhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHH
Q 010031 210 SKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAM 283 (520)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 283 (520)
...|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+. +...+..+...+...|++++|...
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554 34556666666666666666666666665432 244566666666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC
Q 010031 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD 361 (520)
Q Consensus 284 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 361 (520)
|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.++.+.. |+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 76666542 3345566666666666777777777777666554 34555666667777777777777777776654 44
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..++..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|.++|+++.+.. +++...++.++.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 812 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAW 812 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4566667777777777777777777777642 2344577777777777888888888888877432 455667777788
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
.+.+.|+ .+|+..++++.. +.++.++..+...+...|++++|...++++++.+|+++.++..++.++.+.|+.+.
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 8888887 778888877654 33455677777788888888888888888888888888888888888888887653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-33 Score=293.48 Aligned_cols=498 Identities=15% Similarity=0.088 Sum_probs=299.9
Q ss_pred ccchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
.++.++|...+....... |.+......+..++...|+++.|...+..+.... +.+...+..+...+.+.|++++|.+.
T Consensus 308 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 378889999998887654 5556677788899999999999999999988775 44677888899999999999999999
Q ss_pred hcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 010031 86 FDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162 (520)
Q Consensus 86 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (520)
|+++.+ .+...+..+...+...|++++|++.|+.+.+.+.. .......++..+.+.|++++|..+++.+.+.. +.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 463 (899)
T TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PD 463 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC
Confidence 997654 35567777888888888888888888888764321 22234445556666677777777776666532 34
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHH
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDG 239 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 239 (520)
++.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+ .+..++..+...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 55566666666666677777766666665543 33445555566666666666666666666544 234455555555
Q ss_pred HHhcCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 010031 240 FMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (520)
+.+.|+.++|..+++++... +...+..++..+...|++++|..+++.+.+.. +.+..++..+..++...|+++.|.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554321 12334444455555555555555555554432 333444444555555555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh----------------------------------cCCC---
Q 010031 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG----------------------------------ETKE--- 359 (520)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------~~~~--- 359 (520)
..++.+.+.. +.+...+..+..++...|++++|..+++ .+.+
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5555544332 1233344444444444555555555444 4433
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
.+...+..++..+...|++++|...|+++... .|+..++..+..++...|++++|.+.++++... .+.+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 13334444555555555555555555555552 333344455555555555555555555555532 13344555556
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
+..|.+.|++++|.+.|+++.. ++++..+..+...+...|+ .+|+..++++++..|+++..+..++.++...|+.
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 6666666666666666665543 3345555566666666666 5566666666666666666666666666655553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.9e-24 Score=230.21 Aligned_cols=495 Identities=9% Similarity=0.017 Sum_probs=356.4
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHH-HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
++.++|...++...... |++......+ ..+....|+.+.|...++.+.+.. +.+......+...+...|+.++|++.
T Consensus 126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 78888998888887654 3333211112 222233478889999999888875 33566777888888889999999988
Q ss_pred hcccCCCCc-----------------------chHH----------------------------------HHHHHHHhCC
Q 010031 86 FDHFTPKNL-----------------------HIFN----------------------------------VLIRGLAENS 108 (520)
Q Consensus 86 ~~~~~~~~~-----------------------~~~~----------------------------------~li~~~~~~~ 108 (520)
++++..... ..+. .....+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 876532100 0000 1123455678
Q ss_pred ChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh-hHH------------HHHHHHH
Q 010031 109 HFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA-FVR------------VHLADMY 174 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~ 174 (520)
++++|+..|++..+. .| +...+..+..++.+.|++++|...|++..+....... ..+ ..+...+
T Consensus 284 ~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 888888888888773 34 5556777777888888888888888888775432111 111 1224456
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|+++.+ | +...+..+...|. .++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 77888888888888887764 44566777778888888888888888888776 3 3445556666664 456788888
Q ss_pred HHhcCCCCC------------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 010031 252 LFEQMPEKG------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (520)
Q Consensus 252 ~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (520)
+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877665321 1234556777888999999999999998863 335667778888999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----Ch---------hHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DL---------LTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
+++.+... .++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|..+++
T Consensus 519 ~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99887543 34455555556677889999999999987642 11 112345667888999999999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-C
Q 010031 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-D 464 (520)
Q Consensus 387 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~ 464 (520)
. .+++...+..+...+...|++++|++.|+++.+.. +.+...+..++.+|...|++++|++.++.+.. .| +
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 2 23455577788888999999999999999998532 44567888999999999999999999998765 33 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc------hhHHHHhhhhhccCCC
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ------AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 516 (520)
...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|+.+
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 566777888889999999999999999998877654 4556788888888754
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.8e-24 Score=230.47 Aligned_cols=498 Identities=12% Similarity=0.021 Sum_probs=283.3
Q ss_pred cchhhhhhcccccccCCCCCCCCC----------------HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChH-HHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNIT----------------ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQL 69 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 69 (520)
++.++|...++...... |.+... ....+.++...|+.+.|.+.++.+.+... |+.. .....
T Consensus 76 g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~ 153 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYW 153 (1157)
T ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHH
Confidence 78888998888887665 333322 23445678889999999999999987643 3322 22122
Q ss_pred HHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC----------------CCcc
Q 010031 70 ISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR----------------PNRL 130 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----------------p~~~ 130 (520)
.......|+.++|++.|+++.. .+...+..+...+...|++++|++.|+++.+.... ++..
T Consensus 154 ~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 154 RLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChh
Confidence 2223356999999999998864 35567888889999999999999999998653210 0000
Q ss_pred ---cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHH
Q 010031 131 ---TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207 (520)
Q Consensus 131 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (520)
.+...+..+-.......+...+....+....|+.. .......+...|++++|+..|++..+.. +.+..++..+..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 01111111111111222333333222211111111 1122334445555555555555554432 334445555555
Q ss_pred HHHhcCChhHHHHHHhhCCC--CCH---HHH------------HHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPK--KNV---ASW------------VSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAM 267 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~--~~~---~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l 267 (520)
++.+.|++++|...|++..+ |+. ..+ ......+.+.|++++|...|+++... +...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555443 211 001 11122344555555555555554432 12334445
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH------------------------------------------HHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVV------------------------------------------SALSA 305 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------------------------------------~l~~~ 305 (520)
...+...|++++|++.|+++.+.. +.+...+. .+...
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555555555555555555555432 11222222 23334
Q ss_pred hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHH
Q 010031 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+...|++++|...+++..+... .++..+..+...|.+.|++++|...++++.+ | +...+..+...+...+++++|.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4455666666666666655432 2344555566666666666666666665533 2 3333333444445566666666
Q ss_pred HHHHHHHHCCCCCCHH---------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 383 QYFKKMMYSGTEPDGT---------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
..++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 6665543321111111 122334556667777777777662 1445566677888888889999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.++++.. +.+...+..++..+...|++++|+..++++++..|+++..+..++.++.+.|+.+
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 88888665 3456788888888888899999999999888888888888888888888877744
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6e-24 Score=193.03 Aligned_cols=435 Identities=13% Similarity=0.085 Sum_probs=346.6
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC
Q 010031 68 QLISSASLHKSIDYALSIFDHFTPKN---LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 144 (520)
.+..-.-+.|++.+|.+.-...-..| ....-.+-..+.+..+.+....--....+. .+.-..+|..+...+...|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhch
Confidence 45555567888888887665443321 112222234455555555554433333331 22345688889999999999
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhH-HHHHHHHHhcCChhHHHHHHh
Q 010031 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFG 223 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 223 (520)
++.|...++.+++... .....|..+..++...|+.+.|...|.+..+. .|+.... ..+...+-..|++++|...|.
T Consensus 132 ~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998542 35678899999999999999999999888776 3443333 334455566899999999888
Q ss_pred hCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 010031 224 MMPK--KN-VASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-D 296 (520)
Q Consensus 224 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 296 (520)
+..+ |. ...|+.|.-.+-..|++..|+..|++...-| ..+|-.|...|...+.+++|...|.+.... .|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 8776 43 3568888888889999999999999988766 457889999999999999999999988774 554 4
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 373 (520)
..+..+...|...|.++.|+..|++.++... .-+..|+.|..++-..|++.+|...+.+... | ...+.+.|...+.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5677777778899999999999999987652 3457899999999999999999999998776 3 5568899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 451 (520)
..|.+++|..+|....+ +.|... ..+.|...|-+.|++++|+..+++..+ +.|+. ..|+.+...|-..|+.+.
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999998 778766 889999999999999999999999874 68875 689999999999999999
Q ss_pred HHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 452 ALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 452 A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
|+..+.+... .|. ....+.|...|...|+..+|++.|+.++++.||.|.++..++.++.-.-+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 9999998765 555 45788899999999999999999999999999999999999988765444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=6.5e-22 Score=201.59 Aligned_cols=486 Identities=11% Similarity=0.016 Sum_probs=327.4
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
++..+|...|+...... |.+...+..+++++...|+.+.|....++.++.. |+...+..++..+ ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 77788888888887666 5567788888999999999999999999888774 3434443333333 8888888988
Q ss_pred cccCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHhhhCCCCCCcccHHHH-HHHHhccCChhhHHHHHHH
Q 010031 87 DHFTP--K-NLHIFNVLIRG--------LAENSHFQSCISHFVFMLRLSVRPNRLTYPFV-SKSVASLSLLSLGRGLHCL 154 (520)
Q Consensus 87 ~~~~~--~-~~~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~ 154 (520)
+++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.|...+++++|.+++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88753 3 34455544444 5544 45555554 3332233445444444 7888899999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-----C
Q 010031 155 IVKSGVEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-----K 228 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~ 228 (520)
+.+.+. .+......|..+|.. .++ +.+..+++. .++.++..+..++..+.+.|+.++|..+++++.. |
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 998763 345556667777777 366 777777553 2235788888889999999999999998888763 2
Q ss_pred CHHHH------------------------------HHHHHH---------------------------------------
Q 010031 229 NVASW------------------------------VSLIDG--------------------------------------- 239 (520)
Q Consensus 229 ~~~~~------------------------------~~l~~~--------------------------------------- 239 (520)
...++ ..++..
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 11111 000111
Q ss_pred ------------------------HHhcCCHHHHHHHHhcCCC-C-Cc----ccHHHHHHHHHhCCC---hhHHHHH---
Q 010031 240 ------------------------FMRKGDLKKAGELFEQMPE-K-GV----VSWTAMINGFSQNGE---AEKALAM--- 283 (520)
Q Consensus 240 ------------------------~~~~~~~~~a~~~~~~~~~-~-~~----~~~~~l~~~~~~~~~---~~~a~~~--- 283 (520)
..+.|+.++|.++|+.... + +. ....-++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 2345666666666666544 1 11 122355666666655 3333222
Q ss_pred -------------------HHHHHHc-CC-CC--CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 284 -------------------FFQMLDA-GV-RA--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 284 -------------------~~~m~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 33 45566666666655 78888888777776554 444444444555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~ 417 (520)
+...|++++|...|+.+.. ++...+..+..++.+.|+.++|...+++..+. .|+.. .+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence 5688889998888887654 34445666677788888888888888888874 34443 3333444455668888888
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
..+++..+ ..|+...+..+..++.+.|++++|+..+++... .| +...+..+..++...|++++|+..++++++.+
T Consensus 597 ~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888875 356777888888888888888888888888665 34 45677777778888888888888888888888
Q ss_pred CCCcchhHHHHhhhhhccCCC
Q 010031 496 LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~~~ 516 (520)
|+++.++..++.++...|+.+
T Consensus 674 P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888854
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1e-20 Score=192.93 Aligned_cols=463 Identities=12% Similarity=-0.003 Sum_probs=328.2
Q ss_pred hccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHH
Q 010031 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHF 117 (520)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~ 117 (520)
..|+.+.|...++.+++..+. +..++..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 338999999999999988643 488889999999999999999999998765 3323333333333 8899999999
Q ss_pred HHhhhCCCCCCcc-cHHHHHHHH-----hccCChhhHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChhHHHHHhccC
Q 010031 118 VFMLRLSVRPNRL-TYPFVSKSV-----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL-ADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 118 ~~m~~~~~~p~~~-~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~ 190 (520)
+++.+. .|+.. .+..+.... ....+.++|.+.++ .......|++.+.... ...|.+.|+++.|++.+.++
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999984 35544 444444430 22344467777776 4443344445555545 89999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHh-cCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Ccc--
Q 010031 191 PEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVV-- 262 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-- 262 (520)
.+.+ +.+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++... +..
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 9986 4555657777788887 477 88888887655578889999999999999999999999987521 000
Q ss_pred ----------------------------cHHHHHHHH-------------------------------------------
Q 010031 263 ----------------------------SWTAMINGF------------------------------------------- 271 (520)
Q Consensus 263 ----------------------------~~~~l~~~~------------------------------------------- 271 (520)
..-.++..+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 000011122
Q ss_pred --------------------HhCCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhhccCC---hHHHHHH--------
Q 010031 272 --------------------SQNGEAEKALAMFFQMLDA-G-VRANDFTVVSALSACAKVGA---LEAGVRV-------- 318 (520)
Q Consensus 272 --------------------~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~~~---~~~a~~~-------- 318 (520)
.+.|+.++|.++|+..... + ..++......++..|.+.+. ..++..+
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 2244555555555555441 1 12223333456666665544 2222221
Q ss_pred --------------HHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCH
Q 010031 319 --------------HNYISCN-DF-GL--KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 319 --------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 378 (520)
+...... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCH
Confidence 1222111 11 23 56777888888877 899999997776554 5443333445555789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
++|...|+++... .|+...+..+..++...|+.++|...+++..+.. ++....+..+...+.+.|++++|...+++
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999998663 5555667777788899999999999999998521 23333444444455566999999999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 459 MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 459 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
... .|+...+..+..++.+.|++++|+..++++++++|+++.++..+|.++.+.|+.+
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 776 6888899999999999999999999999999999999999999999999998854
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.2e-23 Score=187.62 Aligned_cols=407 Identities=14% Similarity=0.126 Sum_probs=334.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (520)
...|..-..+.|++.+|.+.-...-+.+. .+......+-..+.+..+.+....--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 44566777889999999988766655331 22223333334455555666554444444432 22356789999999999
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASW-VSLIDGFMRKGDLKKAGELF 253 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~ 253 (520)
.|++++|+..++.+.+.. +..+..|..+..++...|+.+.|...|.+..+ |+.... +.+...+...|++++|...|
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999999874 55788999999999999999999999999988 554443 33445556689999999999
Q ss_pred hcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 254 EQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 254 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
.+..+.+ .+.|+.|...+-..|+...|+..|++..+. .|+ ...|..+...|...+.++.|...|.+..... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 8876544 578999999999999999999999999875 454 4678888889999999999999999887654 34
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 405 (520)
...++..+...|...|.+|-|+..+++..+ |+ ...|+.|..++-..|++.+|...|.+... +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 566777788889999999999999998876 44 36899999999999999999999999988 677766 8999999
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~ 482 (520)
.+...|.++.|..+|....+ +.|. ...++.|...|-..|++++|+..+++... +|. ...++.+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999874 4555 46789999999999999999999999765 676 568999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.|++.+.+++..+|.-.+++..|+.+|+..|.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 99999999999999999999999999999987
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.1e-20 Score=187.43 Aligned_cols=393 Identities=12% Similarity=0.024 Sum_probs=228.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (520)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455677778888888888888776 45676777777777888888888888888877754 2345577778888888
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHH-----------------------
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVA----------------------- 231 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----------------------- 231 (520)
.|++++|+.-|......+ ..+......++..+........+...++.-.. +...
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888877665443321 11111111111111111111122222211111 0000
Q ss_pred -------HHHHHHHH---HHhcCCHHHHHHHHhcCCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 232 -------SWVSLIDG---FMRKGDLKKAGELFEQMPEKG------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 232 -------~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
.+..+... ....+++++|.+.|+...+.+ ...|..+...+...|++++|+..|++.++.. +-+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00111000 012345667777776655321 2356666666677777777777777766642 223
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGL 372 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 372 (520)
...|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++..+ | +...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 4456666666667777777777777766553 23456666677777777777777777776654 2 345566666677
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-h-------HHHHHHHHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-K-------HHTVVVNLL 443 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~ 443 (520)
.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|++.|++..+. .|+. . .++.....+
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHH
Confidence 7777777777777776663 343 346666666777777777777777776532 2221 1 111112223
Q ss_pred hccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 444 SRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
...|++++|.+++++... .|+ ...+..+...+...|++++|+..+++++++.+....
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 335677777777766433 333 345666667777777777777777777776665444
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.9e-19 Score=182.35 Aligned_cols=418 Identities=11% Similarity=0.036 Sum_probs=269.2
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFV 135 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 135 (520)
+.++....-.+.+....|+.++|++++....+ .+...+..+...+...|++++|.++|++..+. .|+ ...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33455555666667777888888877776653 23334777777777788888888888877763 243 3445556
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
...+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 666777788888888888777753 23444 6677777777788888888887777763 34455556666667777777
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh---hHHHHHHHHHHHc-C
Q 010031 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA---EKALAMFFQMLDA-G 291 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~-~ 291 (520)
+.|+..++.... ++.....+ ..+.+.....- .+.......+++ ++|+..++.+.+. .
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDL--------EADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHH--------HHHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 777777776665 11100000 00000000000 000001111222 5666666666643 1
Q ss_pred CCCCHH-HHH----HHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----
Q 010031 292 VRANDF-TVV----SALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD---- 361 (520)
Q Consensus 292 ~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 361 (520)
..|+.. .+. ..+.++...|++++|+..|+.+.+.+.. |+ .....+..+|...|++++|...|+.+.+.+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 122211 111 1123344557777777777777665422 22 122224667777777888777777665421
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 362 ---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----------TEPDG---TVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 362 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
......+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|++.++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234556667788888888888888887642 12332 245566778889999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
... +.+...+..++.++...|++++|++.++++.. .|+ ...+...+..+...|++++|+..++++++..|+++.+.
T Consensus 387 ~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 387 YNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 542 55567888999999999999999999999776 455 56777777889999999999999999999999999776
Q ss_pred HH
Q 010031 503 SY 504 (520)
Q Consensus 503 ~~ 504 (520)
..
T Consensus 465 ~~ 466 (765)
T PRK10049 465 RL 466 (765)
T ss_pred HH
Confidence 54
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.6e-19 Score=179.56 Aligned_cols=275 Identities=14% Similarity=0.000 Sum_probs=211.9
Q ss_pred cCChhHHHHHHhhCCC-----C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHH
Q 010031 212 IGYLRKAVELFGMMPK-----K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
.+++++|...|+...+ | ....+..+...+...|++++|...|++..+.+ ...|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999998875 2 34567888888999999999999999986543 4578888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 359 (520)
.|+++++.. +.+...+..+...+...|++++|...|++..+... .+...+..+..++.+.|++++|...|+...+
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998864 44677888889999999999999999999988753 4566777888999999999999999998765
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 431 (520)
.+...++.+...+...|++++|+..|++..+. .|+.. .++.....+...|++++|.+++++.... .|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~p 539 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---DP 539 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CC
Confidence 35678999999999999999999999999884 44311 1122222334469999999999998752 44
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 432 S-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 432 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+ ...+..++.++.+.|++++|++.|++... .+... .+ .....+.+|.++..++.+..|.-..
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~---e~----~~a~~~~~a~~~~~~~~~~~~~~~~ 603 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG---EL----VQAISYAEATRTQIQVQEDYPVLAS 603 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH---HH----HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4 45788899999999999999999998754 11111 11 1222445566665566555554333
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.1e-20 Score=177.05 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=195.1
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 010031 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 171 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 249 (520)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.. |+.....
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---------------
Confidence 344556677777777777776653 33455666666666677777777766666554 1100000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
....+..++..|...|++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+
T Consensus 106 ----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 106 ----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 01234445555555566666666666555432 3344555555666666666666666666655543222
Q ss_pred C----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010031 330 K----GAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402 (520)
Q Consensus 330 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 402 (520)
. ...+..+...+.+.|++++|...++++.+ | +...+..++..+.+.|++++|.++++++.+.+......++..
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 1 11334556666777777777777776654 2 345677788888999999999999999987432222346788
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHH---c
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRT---H 478 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~ 478 (520)
++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++.. .|+...+..++..+.. .
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 888999999999999999998753 56766778899999999999999999988665 5888888888877654 5
Q ss_pred CCHHHHHHHHHHHhc
Q 010031 479 KDTKIAKIALQSSCS 493 (520)
Q Consensus 479 g~~~~A~~~~~~~~~ 493 (520)
|+.+++...++++++
T Consensus 332 g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 332 GRAKESLLLLRDLVG 346 (389)
T ss_pred ccchhHHHHHHHHHH
Confidence 688888888888875
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.6e-20 Score=176.60 Aligned_cols=304 Identities=13% Similarity=0.047 Sum_probs=166.6
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcC
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD---AFVRVHLADMYVQLG 178 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 178 (520)
..+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556677777777777766421 2333556666666666777777777666665321111 134555666666666
Q ss_pred ChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258 (520)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (520)
+++.|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+.......
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666665542 34455566666666666666666666655543100000000
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++
T Consensus 179 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 179 -IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 00123344455556666666666666665542 2233445555555666666666666666665443222234445555
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcH
Q 010031 339 DMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY---SGQV 413 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~ 413 (520)
.+|...|++++|...++.+.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccc
Confidence 566666666666666555443 4444445566666666777777777766665 35666666666655443 3466
Q ss_pred HHHHHHHHHcHhhcCCCCChh
Q 010031 414 KLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~ 434 (520)
+++..+++++.+ .++.|++.
T Consensus 335 ~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHH-HHHhCCCC
Confidence 666666666663 33444443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.7e-19 Score=180.11 Aligned_cols=348 Identities=12% Similarity=0.012 Sum_probs=224.0
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHH
Q 010031 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210 (520)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (520)
-...++..+.+.|+++.|..+++........ +......++......|+++.|...++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445666777888888888888888776533 34455555666677888888888888887764 555667777778888
Q ss_pred hcCChhHHHHHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhCCChhHHHHHH
Q 010031 211 KIGYLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMF 284 (520)
Q Consensus 211 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~ 284 (520)
..|++++|...++++.+ | +...+..+...+...|++++|...++.+.. ++ ...+..+ ..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887766 3 455667777777788888888777776532 22 2223222 3466777888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHhcCCC-
Q 010031 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA----ASLVFGETKE- 359 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~- 359 (520)
+.+......++......+..++...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 777665433344444445566677777777777777777654 2345566667777777777764 5666665554
Q ss_pred -C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hH
Q 010031 360 -K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KH 435 (520)
Q Consensus 360 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~ 435 (520)
| +...+..+...+...|++++|...+++..+ ..|+.. .+..+..++...|++++|...++++... .|+. ..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~ 354 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKW 354 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHH
Confidence 2 445666667777777777777777777766 344433 5555666667777777777777766642 3333 23
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
+..+..++...|+.++|++.+++... .|+.. ..++++|...+.++++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 33345566677777777777776543 23322 234445666666666544433
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2.5e-17 Score=165.00 Aligned_cols=445 Identities=10% Similarity=0.033 Sum_probs=249.2
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcch-HHHH--HHHHHhCCCh
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVL--IRGLAENSHF 110 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~~ 110 (520)
-+-+..+.|+...|...+.++.+......+.++ .++..+...|+.++|+..+++...|+... +..+ ...+...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 333344445555555555555544321111222 44444555555555555555544432222 2222 2244444555
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 555555555554221 122333344444455555555555555554432 33333333333333334443455555555
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHH
Q 010031 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 269 (520)
.+.. +.+...+..+..++.+.|-...|.++..+-.. -+.....-+ +.+.|.+..+....+.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~--------- 257 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPT--------- 257 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhccccc---------
Confidence 5542 33344444455555555555555554444332 000000000 0000111110000000
Q ss_pred HHHhCCC---hhHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 270 GFSQNGE---AEKALAMFFQMLDA-GVRAND-FT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 270 ~~~~~~~---~~~a~~~~~~m~~~-~~~p~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
-....+ .+.|+.-++.+... +..|.. .- ..-.+-++...+++..+++.++.+...+.+....+-..+.++
T Consensus 258 -~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 258 -RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 000112 23444555554442 112321 11 122344667778888888888888777765556677778888
Q ss_pred HHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHH
Q 010031 341 YAKCGNIEAASLVFGETKEK---------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-------------TEPDGT 398 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~p~~~ 398 (520)
|...+++++|..+++.+..+ +......|..++...+++++|..+++++.+.- ..||..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 88888888888888876442 22234667888888888888888888887731 122333
Q ss_pred -HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHH
Q 010031 399 -VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCAC 475 (520)
Q Consensus 399 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 475 (520)
.+..++..+...|++.+|++.++++.... |-|..+...+..++...|++.+|.+.++.... .| +..+....+.++
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 44555667888999999999999997532 56778888999999999999999999987654 34 456777888889
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
...|++.+|..+.+++++..|+++....
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999997654
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.4e-19 Score=168.83 Aligned_cols=443 Identities=14% Similarity=0.060 Sum_probs=295.2
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCCCC------cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc--cH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKN------LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL--TY 132 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~ 132 (520)
.++.+.+.|...|--.|+++.+..+...+...+ ..+|-.+.+++-..|++++|...|.+..+. .|+.+ .+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 355566666666666666666666666554321 234556666777777777777777666553 24433 23
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG----KTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
--+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 335566667777777777777776643 234555555556665554 3455666665555442 4456666666555
Q ss_pred HHhcCCh------hHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Cc------ccHHHHH
Q 010031 209 CSKIGYL------RKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-------GV------VSWTAMI 268 (520)
Q Consensus 209 ~~~~g~~------~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~ 268 (520)
+....-+ ..|..++..-.. +.+...|.+...+...|+++.|...|+..... |. .+-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 5443322 223322222222 56666777777777888888888877765432 11 1233455
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
..+-..++.+.|.+.|..+.+. .|.-+ .|..+.......+...+|...++.....+ ..++..++.+...+.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 5666677788888888887775 34332 33333322334467778888888877554 45677777777788888888
Q ss_pred HHHHHHHhcCCC-----CChhHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 010031 348 EAASLVFGETKE-----KDLLTWTAMIWGLAI------------HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY 409 (520)
Q Consensus 348 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 409 (520)
..|.+-|..+.+ +|..+.-.|...|.. .+..+.|+++|.+.+.. .| |...-+.+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhh
Confidence 888775544433 355555555554432 34577899999998884 44 45577777778889
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
.|++..|..+|.++.+.. .-...+|-.+.++|..+|++-.|+++|+.... +.+..+...|..++.+.|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999998643 33455778899999999999999999998543 457888999999999999999999
Q ss_pred HHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 486 IALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+.+..++.+.|.++...+.++.+..+.+.
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999999999999999999998887543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-18 Score=174.37 Aligned_cols=345 Identities=10% Similarity=-0.035 Sum_probs=251.7
Q ss_pred HhcCCChHHHHHHhcccCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 73 ASLHKSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
+.++.+++.-.-.|+..++ .+..-.-.++..+.+.|++++|+.+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3466777777767766554 23344555677788888999999888888774332 2334445556666788889
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999888888864 2356677788888888899999988888887763 4556777888888888899888888887765
Q ss_pred C--CCH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 227 K--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 227 ~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
. |+. ..+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.... +.+...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 4 333 333333 34777888888888888865532 2234455677888888999998888888764 3456667
Q ss_pred HHHHHHhhccCChHH----HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010031 300 VSALSACAKVGALEA----GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGL 372 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 372 (520)
..+...+...|++++ |...++.+.+... .+...+..+...+...|++++|...+++... | +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777788888888875 7888888877653 4667778888888888999998888887665 3 445677788888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...|++++|...|+++... .|+... +..+..++...|+.++|...|++..+
T Consensus 329 ~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999888888873 555543 33445677888899999998888875
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=8.1e-18 Score=171.85 Aligned_cols=421 Identities=10% Similarity=0.003 Sum_probs=274.0
Q ss_pred hhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhccc---
Q 010031 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--- 89 (520)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 89 (520)
++.++. ...-+.++.-..-.+++....|+.+.|..++....... +.+...+..+...+...|++++|.++|+..
T Consensus 2 ~~~~~~--~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ--ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh--hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445 22336667777788999999999999999999988733 445567888999999999999999999984
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 90 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.+.+...+..+...+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++++.+... .+...+..
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~ 155 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTE 155 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3456677888889999999999999999999885 34333377777888999999999999999999653 35566677
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCc------hhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESV------LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (520)
+...+...|..+.|+..++.... .|+. .....++......+. ...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------------------~~~ 206 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------------------SEK 206 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------------------Chh
Confidence 88888899999999999988775 2221 011111111111110 000
Q ss_pred CCH---HHHHHHHhcCCC-----CCcc-cH----HHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcc
Q 010031 244 GDL---KKAGELFEQMPE-----KGVV-SW----TAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKV 309 (520)
Q Consensus 244 ~~~---~~a~~~~~~~~~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~ 309 (520)
+++ ++|+..++.+.+ |+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+..++...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 111 333333333321 1100 00 00122334455666666666666554321 221 111234455566
Q ss_pred CChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------C---hhHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEK---------------D---LLTWTAM 368 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~---~~~~~~l 368 (520)
|++++|...|+.+.+..... .......+..++...|++++|.+.++.+... + ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 66666666666655432111 1123344444556666666666666554431 1 1244567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhcc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRV 446 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 446 (520)
...+...|++++|+..++++... .|+ ...+..+...+...|++++|++.++++... .|+ ...+...+..+.+.
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHh
Confidence 77888889999999999998874 454 447788888888899999999999988752 454 55666777788889
Q ss_pred CChHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010031 447 GQVDKALNFINKMPE-TPDFVIWGALFCA 474 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 474 (520)
|++++|..+++++.. .|+......+-..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999988765 4665544444333
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.5e-18 Score=163.12 Aligned_cols=500 Identities=13% Similarity=0.050 Sum_probs=290.7
Q ss_pred hhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhC--CCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN--LFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
++.|...|....+.+ |+|.+.+..-+.+.-..+++..|..+|..+.... ..||+.+ .+-.++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 467777777776665 6676666666677777778888888888755443 3445433 2334555677777777777
Q ss_pred cccCCCCcchHHHHHHHH---H---hCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 010031 87 DHFTPKNLHIFNVLIRGL---A---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~---~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 160 (520)
.+..+-|+..-+.++... . ....+..++.++...-..+ .-++...+.|...|.-.|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 666554443333322211 1 1123344444444443321 12444555555555666666666666665555331
Q ss_pred C--CChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHH
Q 010031 161 E--YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVS 235 (520)
Q Consensus 161 ~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 235 (520)
. .-...|-.+.++|-..|++++|...|.+..+..-..-+..+-.+...+.+.|+++.+...|+.+.+ | +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 011234455666666666666666665554432111122333455556666666666666655554 2 2334444
Q ss_pred HHHHHHhcC----CHHHHHHHHhcCCCC-----------------------------------------CcccHHHHHHH
Q 010031 236 LIDGFMRKG----DLKKAGELFEQMPEK-----------------------------------------GVVSWTAMING 270 (520)
Q Consensus 236 l~~~~~~~~----~~~~a~~~~~~~~~~-----------------------------------------~~~~~~~l~~~ 270 (520)
|...|...+ ..+.|..++.+...+ .+...|.+...
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 444444332 233444444433322 23344555555
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDA---GVRAND------FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+...|++.+|...|...... ...++. .+-..+....-..++++.|.+.|..+.+..+ .-...|..++...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMA 540 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHH
Confidence 55566666666666555433 011111 1222233344445566666666666654431 1122222222222
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc--------
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY-------- 409 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~-------- 409 (520)
...++..+|...+..+.. .++..+..+...+.+...+.-|.+-|+...+.- ..+|..+...|.+.|..
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 233556666666665554 455666667767777777777777666554431 23566666666665543
Q ss_pred ----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 410 ----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 410 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
.+..++|+++|.++.+. -+.|...-|-+.-+++..|++.+|..+|.++.+ .....+|..+..+|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH
Confidence 24678899999988752 255667778899999999999999999999876 3456789999999999999999
Q ss_pred HHHHHHHHhcC--CCCCcchhHHHHhhhhhccCC
Q 010031 484 AKIALQSSCSL--NLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 484 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|+++|+..++. ..+++..+.+|+.++.+.|+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999874 457889999999999998873
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=9.1e-16 Score=141.23 Aligned_cols=435 Identities=13% Similarity=0.069 Sum_probs=343.8
Q ss_pred HHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhh----hCCCCCCcccHHHHHHHHhccCC
Q 010031 72 SASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFML----RLSVRPNRLTYPFVSKSVASLSL 144 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~ 144 (520)
+|++..-++.|.++++...+ .+...|-+....--.+|+.+...++..+-. ..|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 44555566777777766543 466667666666666777777777766543 35777777777777777777788
Q ss_pred hhhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 010031 145 LSLGRGLHCLIVKSGVEYD--AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 222 (520)
.-.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|...++- .+-+...|......--..|..+....++
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888888877776432 347888888888888888888888887765 3556777777777767788888888888
Q ss_pred hhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010031 223 GMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296 (520)
Q Consensus 223 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 296 (520)
+++.. | ....|......+...|++..|..++..+-+.+ ...|-+-+.....+.++++|..+|.+.... .|+.
T Consensus 574 qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 574 QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 88776 3 44566777778888899999999988876533 456888888888999999999999988774 5666
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 373 (520)
..|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|.+.|..-.+ | .+..|-.|...-.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 66666666666678899999999988865 334456788889999999999999999988776 4 4457888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
+.|++-.|..++++.+-.+. -+...|...|+.-.+.|+.+.|..++.+..++ ++.+...|..-|....+.++-..+.
T Consensus 731 k~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHH
Confidence 89999999999999887542 25568999999999999999999999998865 4667778888888888888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
..+++... |+.+..++...+....++++|...|+++++.+|++.++|.+.-.++.+.|..
T Consensus 808 DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 808 DALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 88888764 6777778888899999999999999999999999999999999999999953
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9.5e-17 Score=140.39 Aligned_cols=417 Identities=12% Similarity=0.093 Sum_probs=296.5
Q ss_pred CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhc--CCChHH---------------------
Q 010031 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDY--------------------- 81 (520)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~--------------------- 81 (520)
|....+.+.++.++ ++|.+.++.-+++.|.+.|++.+..+-..|+..-+- ..++--
T Consensus 113 ~~~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 113 PLQVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred chhhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 34556777777765 467888999999999999988888777766655321 111111
Q ss_pred ---HHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 010031 82 ---ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158 (520)
Q Consensus 82 ---A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 158 (520)
.-+++-+..+.+..++.++|.++++-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|.+.
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq 267 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ 267 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh
Confidence 11233444456778999999999999999999999999998888899999999998654332 27899999999
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHH----HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhH-HHHHHhhCCC------
Q 010031 159 GVEYDAFVRVHLADMYVQLGKTRGA----FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK-AVELFGMMPK------ 227 (520)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~------ 227 (520)
.+.||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 9999999999999999999988764 5678899999999999999999999999887754 4444443332
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----------cccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 228 ------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----------VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 228 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
.|...|...+..|.+..+.+-|.++-.-+...+ ..-|..+....|+....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 244566777788888888888888766554322 123566777888888999999999999988
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHH
Q 010031 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWTA 367 (520)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 367 (520)
-.-|+..+...++++..-.+.++-.-+++..+...|..........+...+++..- .|+.. -+..
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQV 495 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHH
Confidence 88899999999999999999999999999999988765444444444433333220 12111 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH---HHHHHHh
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT---VVVNLLS 444 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 444 (520)
...-|+. .-.+.....-.+|.+. .......+..+-.+.+.|..++|.+++..+.++..--|-....+ .+++.-.
T Consensus 496 ~~ak~aa-d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 496 AFAKCAA-DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHH-HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 2222211 1112222333455553 33444566666667888999999998888854333333333344 5566666
Q ss_pred ccCChHHHHHHHhhCCC
Q 010031 445 RVGQVDKALNFINKMPE 461 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~ 461 (520)
+......|+.+++-+..
T Consensus 573 ~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASA 589 (625)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 77888888888887753
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=6.7e-16 Score=154.86 Aligned_cols=417 Identities=10% Similarity=-0.035 Sum_probs=272.7
Q ss_pred HHhcCCChHHHHHHhcccCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccH-HHH--HHHHhccCCh
Q 010031 72 SASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFV--SKSVASLSLL 145 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l--l~~~~~~~~~ 145 (520)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++... |+...+ ..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCH
Confidence 356778888888887776542221 122667777777888888888777762 433322 222 3456666788
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
++|.++++++.+... .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888888777553 24556666677777778888888887777766 344444433333333345555577777777
Q ss_pred CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 226 PK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 226 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
.+ | +...+..+...+.+.|-...|.++..+-+ +..+-...... +.+.|.+.. ..+..++.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a~~v----r~a~~~~~------ 258 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAAEQV----RMAVLPTR------ 258 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHHHHH----hhcccccc------
Confidence 65 3 44556666677777777777776665533 11110000000 011111111 11111110
Q ss_pred HHHhhccCC---hHHHHHHHHHHHHc-CCCCCh-hHH----HHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHH
Q 010031 303 LSACAKVGA---LEAGVRVHNYISCN-DFGLKG-AIG----TALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMI 369 (520)
Q Consensus 303 ~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~ 369 (520)
....+ .+.|..-++.+... +..|.. ..| .-.+-++...|++.++++.++.+..+ ...+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 01112 34444555555432 111322 222 23445678889999999999999863 334667789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC----------CCCCh-
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGT-----EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----------IEPSV- 433 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~- 433 (520)
.+|...+++++|+.+|+.+..... .++......|.-++...+++++|..+++.+.+... -.|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 999999999999999999977431 22333457888999999999999999999985221 01222
Q ss_pred --hHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 434 --KHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 434 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
..+..++..+.-.|++.+|++.++++.. +-|...+..+...+...|.+.+|++.++.+..++|++..+....+..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2345567888999999999999999865 567889999999999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
...|+.+
T Consensus 495 l~l~e~~ 501 (822)
T PRK14574 495 MALQEWH 501 (822)
T ss_pred HhhhhHH
Confidence 9887643
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.4e-16 Score=137.31 Aligned_cols=447 Identities=12% Similarity=0.056 Sum_probs=308.3
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCC----CCcc-hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHH-
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTP----KNLH-IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV- 135 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l- 135 (520)
+..++..|...|.......+|+..++-+.+ ||.- .--.+...+.+..++.+|+++|+.....-...+..+-..+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 445555666677777888889888887665 3322 1122345677888999999999887763222222333333
Q ss_pred ---HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCch--------hHHH
Q 010031 136 ---SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL--------LWNV 204 (520)
Q Consensus 136 ---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~ 204 (520)
--.+.+.|.++.|...|+...+.. |+..+-..|+-++..-|+-++..+.|.+|......||.. .-..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 335678999999999999998854 787776667777888899999999999887643222221 1122
Q ss_pred HHHHHHh---------cC--ChhHHHHHHhhCC----CCCHHH---H------------------HHHHHHHHhcCCHHH
Q 010031 205 LINGCSK---------IG--YLRKAVELFGMMP----KKNVAS---W------------------VSLIDGFMRKGDLKK 248 (520)
Q Consensus 205 l~~~~~~---------~g--~~~~a~~~~~~~~----~~~~~~---~------------------~~l~~~~~~~~~~~~ 248 (520)
|+.-..+ .+ +.++++-.--++. .|+-.. | ..-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 2222222 11 2222222222222 232210 0 111234688899999
Q ss_pred HHHHHhcCCCCCcccHHH------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 010031 249 AGELFEQMPEKGVVSWTA------MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (520)
Q Consensus 249 a~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (520)
|.++++-+.+.|..+-.+ .+..+....++..|.++-+..+... +-+......-.......|++++|...|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999998888776443222 1222222345777777766665432 333333333333345679999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 399 (520)
+..+-......|+ +.-.+...|+.++|++.|-++.. .+......+...|....+..+|++++-+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8665444444444 33457788999999999876554 67778888889999999999999999887763 3445668
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHH-HHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCA-CRT 477 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-~~~ 477 (520)
...|...|-+.|+-..|.+.+-.--+ -++.+..+...|..-|....-+++|+..|++..- .|+..-|..++.. +++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 89999999999999999988766542 2567788888899999999999999999998543 7999999998876 567
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 478 HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
.|++.+|..+|+......|++..++..|.++.-..|-.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999998887666643
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=2.4e-14 Score=137.02 Aligned_cols=501 Identities=13% Similarity=0.076 Sum_probs=257.6
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
|++++|..++....+.. |.+...+.++..++...|+.+.+...+-.+.-. .+-|...|..+.....+.|+++.|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555444 445555666666666666666655444333222 2334455555555555666666666666
Q ss_pred cccCCCCcchHH---HHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH----HHHHHhccCChhhHHHHHHHHHHhC
Q 010031 87 DHFTPKNLHIFN---VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF----VSKSVASLSLLSLGRGLHCLIVKSG 159 (520)
Q Consensus 87 ~~~~~~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (520)
.+..+.++.-|. --...|-+.|+...|.+.|.++.+...+.|..-+.. +++.+...++-+.|.+.++.....+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555432222222 223445555666666666666655332112122222 2333444444455555555555421
Q ss_pred -CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC---------------------------CCCCchhHHHHHHHHHh
Q 010031 160 -VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSK 211 (520)
Q Consensus 160 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~ 211 (520)
-..+...++.++..+.+...++.+......+..+. +.++.... -++-++..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhc
Confidence 12234455556666666666666555544433310 11111110 11111111
Q ss_pred cCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CcccHHHHHHHHHhCCChhHHH
Q 010031 212 IGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKAL 281 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 281 (520)
....+....+..-..+ .+...|.-+..+|...|++.+|+.+|..+... +...|-.+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 1111111111111111 22334556666677777777777777766543 2446666777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH--------cCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010031 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC--------NDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (520)
Q Consensus 282 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 353 (520)
+.|+..+... +-+...-..+-..+.+.|+.++|.+.+..+.. .+..|.........+.+.+.|+.++=..+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777766642 22333444455556667777777776666431 12223333333334444444544432111
Q ss_pred HhcCC----------------------------------------C--------------C-----------Ch----hH
Q 010031 354 FGETK----------------------------------------E--------------K-----------DL----LT 364 (520)
Q Consensus 354 ~~~~~----------------------------------------~--------------~-----------~~----~~ 364 (520)
...|. . + .. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 10000 0 0 00 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh---hHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPDG---TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHH 436 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~ 436 (520)
+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.|...++...++ ..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34566777888888888888887766422 1111 122334556677888888888888887654443332 344
Q ss_pred HHHHHHHhccCChHHHHHHHhh-CCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 437 TVVVNLLSRVGQVDKALNFINK-MPETPDFVIWGALF--CACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+.......+.|+-.-=.+++.. +..+|+......++ .-....+.+.-|++.+-+++..+|++|-.-..+|..+..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5444555555544333444443 23233332222222 235678899999999999999999999888877776653
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.2e-14 Score=125.10 Aligned_cols=434 Identities=11% Similarity=0.061 Sum_probs=325.6
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 63 SRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
...+-....--..++++..|.++|++... .+...|-..+..-.++.....|..++++....=...|..-|. -+..-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymE 151 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYME 151 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHH
Confidence 33343444444457788899999998764 677788888888899999999999999988732222333332 33334
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHH
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (520)
-..|++..|.++|+...+ ..|+...|++.|+.-.+-..++.|..++++..-. .|++.+|.-....-.+.|....|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 567999999999999988 6799999999999999999999999999998765 699999999999999999999999
Q ss_pred HHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CC-cccHHHHHHHHHhCCChhHHHHH-----
Q 010031 220 ELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQMPE----KG-VVSWTAMINGFSQNGEAEKALAM----- 283 (520)
Q Consensus 220 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~----- 283 (520)
.+|+...+ .+...+.+....-.++..++.|.-+|+-..+ .. ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988876 2334566666666778888899888875543 21 23455555544555665444332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh-h-HHHHHH--------HHHHhcCCHHHH
Q 010031 284 ---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-A-IGTALV--------DMYAKCGNIEAA 350 (520)
Q Consensus 284 ---~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~--------~~~~~~~~~~~a 350 (520)
|+.++..+ +-|-.++--.+..-...|+.+...++|+.+... ++|-. . .|...| -.-....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555543 567778888888888889999999999999854 33422 1 122111 112356889999
Q ss_pred HHHHhcCCC--C-Chh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 351 SLVFGETKE--K-DLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 351 ~~~~~~~~~--~-~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
.++++...+ | ... .|.....-..++.+...|.+++...+. .-|...+|...|..-.+.++++.+..++++.
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999987765 3 223 344455556678999999999998875 6899999999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF----VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
.+ .+ |.+..+|......-...|+.+.|..+|+-+...|.. ..|.+.+.--...|.+++|..+|+++++..+..+
T Consensus 464 le-~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LE-FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hh-cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 84 42 445678888888888999999999999998876543 3566666666789999999999999999988766
Q ss_pred chhHHHHhh
Q 010031 500 QAMSYCQTF 508 (520)
Q Consensus 500 ~~~~~l~~~ 508 (520)
+|...+.+
T Consensus 542 -vWisFA~f 549 (677)
T KOG1915|consen 542 -VWISFAKF 549 (677)
T ss_pred -HHHhHHHH
Confidence 55444443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=5.8e-13 Score=123.10 Aligned_cols=465 Identities=11% Similarity=0.085 Sum_probs=372.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--------CCcchHHHHHH
Q 010031 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--------KNLHIFNVLIR 102 (520)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~ 102 (520)
..-+.-+|++...++.|..+++...+. ++.+..++.+....--.+|+++...+++++-.. -+...|-.=..
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 345666777778889999999988665 566778887777666788999998888875421 34556777777
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPN--RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
.|-..|..-.+..+......-|+.-. ..||..-...|.+.+.++-++.+|...++- ++-+...|...+.+--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence 88888888888888888887776432 348888889999999999999999999884 334677888888888888999
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
+.-..+|++.... ++.....|......+-..|++..|..++.+.-+ .+...|.+-+........++.|..+|.+..
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999999998877 355666777777778889999999999998876 456789999999999999999999999887
Q ss_pred CC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH
Q 010031 258 EK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 258 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
.. ....|.--+...--.++.++|.+++++.++. ++--...|..+.+.+-+.++++.|...|..-.+. ++..+..|-
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 54 3567777777777788999999999998886 3334556777778888999999999888765533 456778888
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 412 (520)
.|...-.+.|.+-.|+.+++...- | |...|...|+.-.+.|+.+.|..+..+..+. ++-+...|.--|...-+.++
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 899999999999999999997664 3 6679999999999999999999999888875 33344577777777767666
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
-......+++. .-|+++...+...+....++++|.+.|.+... .|| -.+|.-+..-+.++|.-+.-.+++.+
T Consensus 803 kTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555444433 56777788888999999999999999999765 444 57899999999999999999999999
Q ss_pred HhcCCCCCcchhHHHHh
Q 010031 491 SCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 491 ~~~~~p~~~~~~~~l~~ 507 (520)
...-.|.....|.....
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999999888866543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=5.7e-13 Score=127.83 Aligned_cols=470 Identities=13% Similarity=0.033 Sum_probs=323.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhc---ccCCCCcchHHHHHHHHHhCC
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD---HFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~ 108 (520)
...+..+-..|+.+.|.+++.++++.. +.....|.+|..+|-..|+.++++..+- .+.+.|...|..+.....+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 345566677799999999999999997 4567889999999999999999987764 344567788999999899999
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCChhHHH
Q 010031 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV----HLADMYVQLGKTRGAF 184 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~ 184 (520)
++++|.-+|.+..+... ++...+---...|-+.|+...|...|.++.....+.|..-.. ..++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998542 333333334567788999999999999999876533433333 3455677778889999
Q ss_pred HHhccCCCC-CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHH----------------------HHH---
Q 010031 185 KVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVA----------------------SWV--- 234 (520)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~----------------------~~~--- 234 (520)
+.++..... +-..+...++.++..+.+...++.|......... +|.. +|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 988876652 2245677888999999999999998887755543 1111 111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 010031 235 -SLIDGFMRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307 (520)
Q Consensus 235 -~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 307 (520)
-+.-++.+.+..+....+...+.+. ++..|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1222333333333333333333322 245688899999999999999999999998755556778999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------------hHHHHHHHHHHHc
Q 010031 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL------------LTWTAMIWGLAIH 375 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~ 375 (520)
..|..+.|.+.|+.++... +.+...-..|...+.+.|+.++|.+++..+..||. .........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998765 34556667788899999999999999999877652 1222334456677
Q ss_pred CCHHHHHHHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHccCcHHHHHHHHHHc-----HhhcC
Q 010031 376 GRYEQAIQYFKKMMYSG-----T-----------------EPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYF 428 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~ 428 (520)
|+.++=+.+...|+..+ + .-........+.+-.+.++......-...- ....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 77776555544443311 1 111122223333333333322222211111 11122
Q ss_pred CCCCh--hHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcC----
Q 010031 429 IEPSV--KHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDF---VIWGALFCACRTHKDTKIAKIALQSSCSL---- 494 (520)
Q Consensus 429 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 494 (520)
+..+. ..+..++..+.+.|++++|..++..+.. .++. ..-...+.+....+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22222 3456778889999999999999988765 1222 12334455677899999999999999876
Q ss_pred -CCCCcchhHH
Q 010031 495 -NLSIPQAMSY 504 (520)
Q Consensus 495 -~p~~~~~~~~ 504 (520)
+|..+..|+.
T Consensus 700 ~~~~q~~l~n~ 710 (895)
T KOG2076|consen 700 LDVYQLNLWNL 710 (895)
T ss_pred hhhHHHHHHHH
Confidence 6666666663
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1e-16 Score=144.63 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=107.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
+...+.+.|++++|++++++......+|+...|.. +...+...++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45667788888888888866544432344444443 444555678888888888888766533 55666667766 6788
Q ss_pred CHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
++++|.+++....+ ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876644 455667778888888899999999998877532 234556777888888899999999999999
Q ss_pred cHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 423 MRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 423 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
..+. .| +......++..+...|+.+++.++++.... +.|+..|..+..++...|+.++|...++++++.+|+||
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8853 45 466788889999999999987777776543 34566788888889999999999999999999999999
Q ss_pred chhHHHHhhhhhccCCCc
Q 010031 500 QAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~ 517 (520)
..+..++.++.+.|+.+.
T Consensus 249 ~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHHHHHHHT-------
T ss_pred cccccccccccccccccc
Confidence 999999999999998764
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.1e-13 Score=118.41 Aligned_cols=445 Identities=11% Similarity=0.073 Sum_probs=328.7
Q ss_pred ccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCc-chHHHHHHHHHhCCChhHHHHHH
Q 010031 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNL-HIFNVLIRGLAENSHFQSCISHF 117 (520)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~ 117 (520)
.++...|+.+|+..+.-. ..+...+-..+.+-.+...+..|..++++... |.+ ..|...+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346778889999888765 55778888888888999999999999998654 322 45666666666789999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC-CC-
Q 010031 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NK- 195 (520)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~- 195 (520)
++-.. ..|+...|.+.|+.-.+.+.++.|..+++..+- +.|++..|.-....--+.|+...|..+|+...+. |-
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99877 679999999999999999999999999999887 4599999999999999999999999999876653 10
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C---CHHHHHHHHHHHHhcCCHHHHHHH--------HhcCCCCC--
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K---NVASWVSLIDGFMRKGDLKKAGEL--------FEQMPEKG-- 260 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~-- 260 (520)
..+...+.+....-.++..++.|..+|.-... | ....|..+...--+-|+.....+. ++.+...+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11223344444444567778888888876665 3 234566666555556665444433 22333333
Q ss_pred -cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHh---hccCChHHHHHHHHHHHHcCCCC
Q 010031 261 -VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-------FTVVSALSAC---AKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 261 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
-.+|--.++.--..|+.+...++|++.+.. ++|-. ..|.-+=-++ ....+++.+.++++..++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 346667777778889999999999999875 45532 1122121122 3567899999999998873 445
Q ss_pred ChhHHHHHH----HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 010031 330 KGAIGTALV----DMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLA 402 (520)
Q Consensus 330 ~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 402 (520)
...+|..+- ....++.++..|.+++..... |...+|...|..-.+.++++.+..+|++.++- .| |..+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHH
Confidence 555665443 334578899999999987765 77778888888888999999999999999994 55 4558888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHH-----
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACR----- 476 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~----- 476 (520)
....-...|+.+.|..+|.-+.....+......|-..|..-...|.++.|..+++++.. .+...+|.++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 88888889999999999999885333333344566667766789999999999999876 455667777664322
Q ss_pred HcC-----------CHHHHHHHHHHHhcC
Q 010031 477 THK-----------DTKIAKIALQSSCSL 494 (520)
Q Consensus 477 ~~g-----------~~~~A~~~~~~~~~~ 494 (520)
..| +...|..+|+++...
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 344 667899999998753
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=4.7e-13 Score=126.38 Aligned_cols=220 Identities=13% Similarity=0.006 Sum_probs=153.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh-------HHHHHHHHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-------IGTALVDMY 341 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~ 341 (520)
..+...|++++|...++++.+.. +-++.....+...|.+.|+++.+..++..+.+.+..++.. .+..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543 2234444555555555555555555555555544322111 222223333
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
....+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 344456666777777655 46778888999999999999999999999883 5555322 2334446699999999
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
..+...+.+ +-|+..+..+...+.+.|++++|.+.|++... .|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 316 ~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999988643 45566788999999999999999999999776 6999999999999999999999999999998764
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-12 Score=114.20 Aligned_cols=429 Identities=11% Similarity=0.102 Sum_probs=263.7
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccC--chHH-HHHHHH-------------------HHHhCCCCChH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS--TKQL-RQIHAQ-------------------IILHNLFASSR 64 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~a-~~~~~~-------------------~~~~~~~~~~~ 64 (520)
+.+.++--++..|.+.+.+-+......+.++..-.+. +.-+ .+.|-. +...-.+-+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 4566777778888888877666555555555443331 1111 111111 12222345678
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 010031 65 ITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (520)
Q Consensus 65 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 140 (520)
++..+|..+|+--..+.|.+++++... -+..+||.+|.+-. +....+++.+|....++||..|+|.++.+.+
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 899999999999999999999998764 35567888887543 3333789999999999999999999999999
Q ss_pred ccCChhh----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHH----HhccCCCCCCCC----CchhHHHHHH
Q 010031 141 SLSLLSL----GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG-AFK----VFDETPEKNKSE----SVLLWNVLIN 207 (520)
Q Consensus 141 ~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~----~~~~~~~~~~~~----~~~~~~~l~~ 207 (520)
+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +.. +.+.+..+.++| +...|..-+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 46778889999999999999999999999888754 333 334444333333 4455667788
Q ss_pred HHHhcCChhHHHHHHhhCCC--------CC---HHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcccHHHHHHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPK--------KN---VASWVSLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFS 272 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 272 (520)
.|....+.+.|.++..-+.. |+ ..-|..+....|.....+.-..+|+.|.. +...+...++++.-
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 88888898888877665543 22 23466777888888999999999999875 34566777888888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHH-
Q 010031 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAA- 350 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a- 350 (520)
..|+++-.-+++..++..|-.-+...-. +++..+......|+...-.-+-....++ -++.++
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888876332222222 2222222222222212111111111100 001111
Q ss_pred HHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 351 SLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT----EPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 351 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...-.++.+ -.....+..+-.+.+.|..++|.+++..+.+.+- .|......-++....+.++...|...++-|.
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111111111 1233444445555666777777777766644331 2222333455555566667777777777765
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
. ++.+.-...-+.++..+.-+..-.+|+.-+
T Consensus 589 ~-~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 589 A-FNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred H-cCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 3 333222223444555544444444444433
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.1e-13 Score=120.00 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMY 174 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 174 (520)
+-....-|.++|.+++|++.|.+.++ ..|| +.-|.....+|...|+|+++.+--...++.+ |+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 33444567788888999999988887 5577 6667777777788888888887777776633 44 33555566677
Q ss_pred HhcCChhHHH
Q 010031 175 VQLGKTRGAF 184 (520)
Q Consensus 175 ~~~g~~~~a~ 184 (520)
-..|++++|+
T Consensus 194 E~lg~~~eal 203 (606)
T KOG0547|consen 194 EQLGKFDEAL 203 (606)
T ss_pred HhhccHHHHH
Confidence 7777777764
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=8.6e-13 Score=116.86 Aligned_cols=432 Identities=13% Similarity=0.085 Sum_probs=229.6
Q ss_pred hhhhhcccccccCCCCCCCCCH-HHHHHHHHhccCchHHHHHHHHHHHhCCCCC----hHHHHHHHHHHhcCCChHHHHH
Q 010031 10 TTAIAPTTNIKSSHKPSNNITE-THIISLIHSSNSTKQLRQIHAQIILHNLFAS----SRITTQLISSASLHKSIDYALS 84 (520)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 84 (520)
.+|+.-++-+.+....|+.... ..+..+.-+...+..|.++++..+..-+..+ ..+.+.+--.+.+.|.+++|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 3455555555555444443322 2334444444566777777776665522222 2333334444667788888888
Q ss_pred HhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCccc--------HHHHHHHHhc---------cC--
Q 010031 85 IFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT--------YPFVSKSVAS---------LS-- 143 (520)
Q Consensus 85 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~---------~~-- 143 (520)
.|+...+ ||..+--.|+-++..-|+.++..+.|.+|..--..||..- -..|+.-..+ .+
T Consensus 298 sfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka 377 (840)
T KOG2003|consen 298 SFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA 377 (840)
T ss_pred hHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence 7776543 5544333333344456677777777777765322222221 1112211111 11
Q ss_pred ChhhHHHHHHHHHHhCCCCChh-------------HHH--------HHHHHHHhcCChhHHHHHhccCCCCCCCCCchhH
Q 010031 144 LLSLGRGLHCLIVKSGVEYDAF-------------VRV--------HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202 (520)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 202 (520)
+.+.+...-.+++.--+.|+-. .+. .-..-+.+.|+++.|++++.-..+.+-+.-...-
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa 457 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAA 457 (840)
T ss_pred hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHh
Confidence 1111111111111111112110 000 0122355666777766666655544322222222
Q ss_pred HHHHHHHHh--cCChhHHHHHHhhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccc---HHHHHHHHHhC
Q 010031 203 NVLINGCSK--IGYLRKAVELFGMMPKKNV---ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---WTAMINGFSQN 274 (520)
Q Consensus 203 ~~l~~~~~~--~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~ 274 (520)
+.|...+.- -.++..|..+-+.....|. .....-.+.....|+++.|.+.|++....|... ...+.-.+-..
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~ 537 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL 537 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh
Confidence 222222222 2245555555554443221 112222223344577777777777777666432 22233345667
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.+...|.+.|-+.|+-..|.+..
T Consensus 538 ~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 7777777777665442 233455566666677777777777777766553 24566777777777777777777776665
Q ss_pred hcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHcHhhcCCC
Q 010031 355 GETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMRFDYFIE 430 (520)
Q Consensus 355 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~ 430 (520)
-+--+ -|+.+..-|...|....-+++++.+|++..- +.|+..-|..++..|. +.|++.+|.++++...++ ++
T Consensus 616 ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fp 691 (840)
T KOG2003|consen 616 YDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FP 691 (840)
T ss_pred hhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--Cc
Confidence 44333 3666666677777777777777777777655 6777777777666543 577777777777777543 46
Q ss_pred CChhHHHHHHHHHhccC
Q 010031 431 PSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g 447 (520)
.+.....-|++.+...|
T Consensus 692 edldclkflvri~~dlg 708 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cchHHHHHHHHHhcccc
Confidence 66666666766666555
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.2e-12 Score=124.48 Aligned_cols=223 Identities=12% Similarity=-0.006 Sum_probs=144.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH-------HHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-------ALVDM 340 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 340 (520)
...+...|+++.|...++.+.+.. +-++.....+...+...|+++.+.+.+..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555543 2233444555555555555555555555555554322221111 11111
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCcHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--F-LAILTACWYSGQVK 414 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~g~~~ 414 (520)
-......+...+.++...+ .+...+..++..+...|+.++|.+++++..+. .||... + ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1122234455555655554 37778888899999999999999999999984 455542 1 11222234467888
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh--CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK--MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.+.+.+++..+..+-.|+.....++.+.+.+.|++++|.+.|++ ... .|++..+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988876432222225677899999999999999999994 433 799988889999999999999999999998
Q ss_pred hc
Q 010031 492 CS 493 (520)
Q Consensus 492 ~~ 493 (520)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 75
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.5e-15 Score=136.97 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 010031 237 IDGFMRKGDLKKAGELFEQM-PE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (520)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 311 (520)
...+.+.|++++|.+++++. .. .+...|..+.......++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455556666666666322 11 12344555555566666777777777777665422 34445555554 56677
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
+++|..++....+.. +++..+..++..+...++++++.++++.+.. ++...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777766554432 4455566667777777777777777766432 466678888888999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CC
Q 010031 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TP 463 (520)
Q Consensus 387 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 463 (520)
+..+ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|...+++... +.
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9998 5776 5578889999999999999999998887543 56667788999999999999999999999765 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
|+.....+..++...|+.++|..+.+++++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6778888889999999999999999988753
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.6e-12 Score=114.54 Aligned_cols=459 Identities=10% Similarity=0.023 Sum_probs=299.5
Q ss_pred cCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcc--cCCCCcchHHHHHHHHHhCCChhHHHHHHH-
Q 010031 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH--FTPKNLHIFNVLIRGLAENSHFQSCISHFV- 118 (520)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~- 118 (520)
.+...|..+-+++...+..|+.. --+..++.-.|.++.|..+... +.+.+..+.......+.+..++++|+.++.
T Consensus 30 ~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555666666665555444433 3466777777888888777653 445788888888888999999999999887
Q ss_pred ---HhhhC---------CCCCCccc----HHHHHH-------HHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010031 119 ---FMLRL---------SVRPNRLT----YPFVSK-------SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175 (520)
Q Consensus 119 ---~m~~~---------~~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (520)
.+... -+.+|..- -+.-.+ .+....+.++|...+.+... .|+..+..+...-.
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVS 183 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHH
Confidence 22110 01111111 111111 23334456666666666554 34444433322111
Q ss_pred hc-CChhHHHHHhccCCCC-CCCCCchhHHHHHHHH-HhcCChhHHHHHH--hhCC--CCCHHHHHHHHHHHHhcCCHHH
Q 010031 176 QL-GKTRGAFKVFDETPEK-NKSESVLLWNVLINGC-SKIGYLRKAVELF--GMMP--KKNVASWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 176 ~~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~ 248 (520)
.. =-..+-..+|+.+.-. -...+......+.... ++..+. .....- ..+. +.+........+-+...+++.+
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~ 262 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKE 262 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHH
Confidence 10 0011112222221100 0011111111111111 000000 000000 0000 1345555666677788899999
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc
Q 010031 249 AGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325 (520)
Q Consensus 249 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (520)
..++++.+.+.|. ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|..+.--|...|+..+|.++|.+....
T Consensus 263 c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l 341 (611)
T KOG1173|consen 263 CLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL 341 (611)
T ss_pred HHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 9999999887663 45667777889999988888888888876 3556788888888888889999999999998765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 010031 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFL 401 (520)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~ 401 (520)
+. .-...|-.+...|.-.|..|.|...+....+ .....+.-+.--|.+.++...|.++|.+... +.|+.. ..+
T Consensus 342 D~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~ 418 (611)
T KOG1173|consen 342 DP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLH 418 (611)
T ss_pred Cc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhh
Confidence 42 2345778888999999999999888876554 2223344455567888999999999999887 677555 666
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhc----CCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDY----FIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
-+.-.....+.+.+|..+|+.....- .-.+ -..+++.|..+|.+.+++++|+..+++... +.++.++.++...
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 66666667899999999999876211 0011 235688999999999999999999999665 5678899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
|...|+++.|++.|.+++.+.|++..+-..|+.+...
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999998888887776654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=8.4e-14 Score=129.29 Aligned_cols=203 Identities=13% Similarity=0.049 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWTAMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~ 369 (520)
+-.+.+|-.+..+|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....|.. .|..++
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 3445666666666666666666666666666543 125566666666666677777777777777765443 566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
-.|.+.++++.|+-.|+++.+ +.|... ....+...+.+.|+.++|+++++++..-. +.|+..--..+..+...++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcc
Confidence 889999999999999999998 677554 66677778889999999999999987421 3344444456777888999
Q ss_pred hHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 449 VDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 449 ~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+++|+..++++++ -|+ ...+..+...|.+.|+.+.|+..|.-|+.++|.-..
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999876 354 567777888899999999999999999999997655
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-11 Score=111.04 Aligned_cols=407 Identities=13% Similarity=0.017 Sum_probs=249.2
Q ss_pred HHHHHHhcCCChHHHHHHhcccCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccC
Q 010031 68 QLISSASLHKSIDYALSIFDHFTP--KN-LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLS 143 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~ 143 (520)
..-.-|-+.|++++|++.+.+..+ |+ ++.|.....+|...|+|++..+.-.+.++ +.|+-. .+..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344556788999999999998764 66 78888899999999999999988888877 556643 3444445666777
Q ss_pred ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhcc-CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 010031 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE-TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222 (520)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 222 (520)
++++|..=..-..=.+--.+..+ ..++.--.+ ..|....++ +.+.+ +|...+- ..|..|...=..+--
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr-~p~lPS~-~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASI-EPMAERVLK----KQAMKKAKEKLKENR-PPVLPSA-TFIASYFGSFHADPK---- 266 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchh-HHHHHHHHH----HHHHHHHHHhhcccC-CCCCCcH-HHHHHHHhhcccccc----
Confidence 77776543322221111011111 111111111 112222222 22221 3322222 222222221000000
Q ss_pred hhCCCCCHHHHHHHHHH----HHhc-CCHHHHHHHHhcC-------CCCC---------cccHHHHHHHHHhCCChhHHH
Q 010031 223 GMMPKKNVASWVSLIDG----FMRK-GDLKKAGELFEQM-------PEKG---------VVSWTAMINGFSQNGEAEKAL 281 (520)
Q Consensus 223 ~~~~~~~~~~~~~l~~~----~~~~-~~~~~a~~~~~~~-------~~~~---------~~~~~~l~~~~~~~~~~~~a~ 281 (520)
..+..+.......+..+ +... ..+..|...+.+- ...+ ..+.......+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 00000111111111111 1110 1222333322221 1111 112222233355678888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-
Q 010031 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK- 360 (520)
Q Consensus 282 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 360 (520)
.-|+..+.....++. .|..+...|....+.++....|.+..+.+. .++.+|..-.+.+.-.+++++|..=|++...-
T Consensus 347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998886533333 277777788999999999999999988764 57778888888888889999999999988763
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----
Q 010031 361 --DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----- 432 (520)
Q Consensus 361 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 432 (520)
++..|-.+..+..+.+++++++..|++.+++ -|+ +..|+.....+...+++++|.+.|+...+ +.|+
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 4556666777777888999999999999885 444 45888889999999999999999998875 2333
Q ss_pred ----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 433 ----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 433 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
+.+.-.++..-.+ +++..|.+++++..+ .|. ...+.+|...-.+.|+.++|+++|++...+.
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2223333333333 889999999998775 343 4478888888889999999999999987654
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2e-12 Score=122.08 Aligned_cols=274 Identities=13% Similarity=0.100 Sum_probs=175.9
Q ss_pred CCChhHHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChhHH
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGA 183 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 183 (520)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544421 11121 222233335666666666666666553 23332222 234556666666666
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCH--------HHHHHHHHHHHhcCCHHHHHHH
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNV--------ASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--------~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
...++++.+.. |.++.....+...|.+.|++++|..++..+.+ .+. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666554 44555566666666666666666666666654 111 1233334434444556666677
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 253 FEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 253 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++.+.. .++.....+...+...|+.++|.+.+++..+. +|++... ++.+....++.+.+.+..+...+.. +-
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 776653 34567777888888889999999888888773 4555222 2334445688888888888887664 35
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
|+.....+...+.+.+++++|.+.|+...+ |+...+..+...+.+.|+.++|..+|++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666778888889999999999999988765 7777888888999999999999999988754
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.3e-11 Score=107.38 Aligned_cols=252 Identities=14% Similarity=0.105 Sum_probs=142.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhc
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRK 243 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~ 243 (520)
+..++....+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+ .|..+|..++-.--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4455666667777777777777777666666666666666677788888888887776 3555666655433322
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
..+.---...-.+.+--+.|...+.+-|.-.++.++|...|++.++.+ +-....++.+.+-|....+...|.+.++.++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222211111112222234555666666666677777777777766653 2233445555555666666666666666666
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 400 (520)
+.. +.|-..|-.|.++|.-.+.+.-|+-.|++... .|...|.+|..+|.+.++.++|++.|.+....|- .+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHH
Confidence 543 23445555555555555555555555554433 2445555555555555555555555555555331 233455
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..|...+-+.++..+|...|++..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555555555443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1e-13 Score=128.79 Aligned_cols=262 Identities=12% Similarity=0.048 Sum_probs=208.9
Q ss_pred CHHHHHHHHhcCCCC--C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHH
Q 010031 245 DLKKAGELFEQMPEK--G-VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVH 319 (520)
Q Consensus 245 ~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (520)
+..+|...|..+.+. | ......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 567888888885442 3 2455668889999999999999999988752 122456677766554332 222222
Q ss_pred HH-HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010031 320 NY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (520)
Q Consensus 320 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 395 (520)
.+ +.+. -+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+.+-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22 2222 2567899999999999999999999999998873 457889999999999999999999999876 566
Q ss_pred CHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHH
Q 010031 396 DGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGAL 471 (520)
Q Consensus 396 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 471 (520)
... .|-.+...|.+.++++.|.-.|+++.+ +.| +..+...++..+-+.|+.++|+.+++++.. +.|+..-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 555 888888899999999999999999985 445 456777888999999999999999999764 4466666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+..+...+++++|+..+|++.++-|++..++..+|.+|.+.|..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777888999999999999999999999999999999999999865
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=1.7e-10 Score=107.01 Aligned_cols=281 Identities=13% Similarity=0.141 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-----------
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV-------VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR----------- 293 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------- 293 (520)
.|..+...|-..|+++.|..+|++..+-+- .+|......-.+..+++.|+++++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 467788889999999999999999876542 35666666667788888998888776532111
Q ss_pred C------CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh-
Q 010031 294 A------NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDL- 362 (520)
Q Consensus 294 p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~- 362 (520)
+ +...|...+..--..|-++....+|+.+.+..+. ++.+.......+....-++++.+++++-.. |++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1122334444445567888888899999887764 344433344455667778999999998776 555
Q ss_pred hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCcHHHHHHHHHHcHhhcCCCCC--hhH
Q 010031 363 LTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL--TACWYSGQVKLALNFFDSMRFDYFIEPS--VKH 435 (520)
Q Consensus 363 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 435 (520)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..-.+-|.-..|+.+++++.. ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 367776665554 2468999999999998 6777665322222 223346888889999998763 34443 245
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHhcC-CCC-CcchhHHHHhhh
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWG---ALFCACRTHKDTKIAKIALQSSCSL-NLS-IPQAMSYCQTFM 509 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~ 509 (520)
||..|.--...=-......+++++.+ -|+...-. -+...-.+.|..+.|..+|.-.-++ +|. ++..|...-.+-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 66655433322222333444444433 24433222 2223345678888888888777765 443 445555555555
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
-+.|+.+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 5666654
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.7e-12 Score=110.68 Aligned_cols=215 Identities=12% Similarity=0.048 Sum_probs=138.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
.-...++++|+.+|+++.+... --|..+|..++-.-.....+ .++..-.-.-.+-.+.|+..+.+.|.-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 3445566666666666665421 01334555444332221111 11111111111234456666677777777788
Q ss_pred HHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 349 AASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 349 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
+|...|+...+- ....|+.+.+-|...++...|++-|+++++ +.| |...|-.|.++|...+...=|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 888888877662 335777788888888888888888888877 444 45578888888888888888888888776
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+ . -|.|...|.+|.++|.+.++.++|++.|.+... .-+...+..+...+.+.++..+|.+.+++-++
T Consensus 426 ~-~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 426 E-L-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred h-c-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 2 244567788888888888888888888877654 23446777777788888888888888887776
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3.6e-11 Score=105.45 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=180.0
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
.|++.+|++.+.+-.+.+ +.....|..-.++.-+.|+.+.+-.++.+..++ +....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566777777666655544 222333444445555566666666666665551 222333344444555555555544
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 253 FEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 253 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++++.+ ..........++|.+.|++.....++.+|.+.|.-.++..-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 444332 223444445555555555555555555555554332221100 0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
...++..+++-....+..+.-...|+.... .++..-..++.-+...|+.++|.++.++..+++..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 112334444444444445555556666654 356666777888889999999999999999988877722 2234
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
+.+-++...-++..++-.+..+. ++..+..|...|.+.+.+.+|.+.|+.... .|+..+|..+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 67788888888888887655543 446888999999999999999999998655 799999999999999999999999
Q ss_pred HHHHHHhcC
Q 010031 486 IALQSSCSL 494 (520)
Q Consensus 486 ~~~~~~~~~ 494 (520)
+..++++-+
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 999999853
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.2e-11 Score=109.41 Aligned_cols=249 Identities=14% Similarity=0.006 Sum_probs=202.7
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
....-.+-+...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..+.+.- +..+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 34445556778899999999999998873 6666677777778888898888777777777654 567788999999999
Q ss_pred hcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 418 (520)
-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..|..+.+. -|.. ..+..+.--|.+.++...|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 9999999999999876533 358999999999999999999999888763 3322 244455556888999999999
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--------TP-DFVIWGALFCACRTHKDTKIAKIALQ 489 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (520)
+|.+...- .|.|+...+-+.-+....+.+.+|..+|+.... ++ =..+++.|..+|++.+.+++|+..++
T Consensus 402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99998742 355677888888888899999999999987653 12 23468889999999999999999999
Q ss_pred HHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 490 SSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 490 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
+++.+.|.+++++..+|.+|...|..+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 9999999999999999999999998764
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=3.1e-12 Score=121.55 Aligned_cols=279 Identities=12% Similarity=0.043 Sum_probs=189.2
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchh-HHHHHHHHHhcCChhHHHHHHhhCCC--CCH--HHHHHHHHHHHhcCCHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLL-WNVLINGCSKIGYLRKAVELFGMMPK--KNV--ASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a 249 (520)
...|+++.|.+.+.+..+. .|++.. +-....++.+.|+.+.|..++.+..+ |+. .........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467888888877766554 343333 33345666777888888888877654 443 2333456777778888888
Q ss_pred HHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHh---hccCChHHHHHHHHHH
Q 010031 250 GELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV-SALSAC---AKVGALEAGVRVHNYI 322 (520)
Q Consensus 250 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 322 (520)
...++.+.+. +...+..+...+...|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888877653 34567788888889999999999999888876433 33221 111111 2222333333455544
Q ss_pred HHcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 323 SCNDF---GLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLT---WTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 323 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
.+... +.++..+..++..+...|+.++|.+++++..+ |+... ...........++.+.+.+.+++..+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 44332 13778888888999999999999999988776 33321 122222233457788889999888773 5
Q ss_pred CCHH---HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 395 PDGT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 395 p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
|+.. ...++...|.+.|++++|.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544 55678889999999999999999533 2334789888889999999999999999999874
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.6e-11 Score=104.26 Aligned_cols=213 Identities=14% Similarity=0.150 Sum_probs=121.7
Q ss_pred hcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHH------HHHHHHHHHHhcCCHHH
Q 010031 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVA------SWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~ 248 (520)
-.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.+ ||.. ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567777777777777653 44455556677777777788888777777666 4331 23455666777788888
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhhccCChHHHHHHHHH
Q 010031 249 AGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNY 321 (520)
Q Consensus 249 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 321 (520)
|+.+|..+.+.+. .+...|+..|-...+|++|+++-+++.+.+..+... .|--+...+....+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887776443 355667777888888888888888777765444322 222333344445566666666666
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
..+.+.+ ....-..+.+.+...|+++.|.+.++.+.+.|.. +...|..+|...|+.++....+.++.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6554421 2222223334444444444444444444443321 233344444444444444444444444
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-10 Score=99.78 Aligned_cols=283 Identities=10% Similarity=0.021 Sum_probs=208.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010031 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV---SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 304 (520)
.|+.....+..++...|+.++|+..|++....|+. ......-.+.+.|+.++...+...+.... .-....|..-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 56667778888888888888888888877655433 23333445667888888887777776532 122222323333
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 381 (520)
......+++.|..+-++.++.+. .+...+-.-..++...+++++|.-.|+.... | +..+|..|+.+|...|+..+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 34566788888888888876653 3455555556778889999999999987654 3 678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHH-HccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhh
Q 010031 382 IQYFKKMMYSGTEPDGTVFLAIL-TAC-WYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
...-+...+. +..+..+...+. ..| .....-++|.+++++..+ +.|+- ...+.+.+.+...|+.++++.++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9888776663 233444554442 222 233445789999988764 46763 4667888999999999999999998
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 459 MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 459 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
... -||....+.|...+...+.+++|++.|..++.++|++-.+..-+-..-.+..+++
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~D 522 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESD 522 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCC
Confidence 655 6899999999999999999999999999999999999999888877776666554
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.1e-11 Score=103.59 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=160.0
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCCh
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA------FVRVHLADMYVQLGKT 180 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 180 (520)
+++.++|++.|-+|.+.. +-+..+..+|.+.|.+.|..+.|.+++..+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467889999999888722 123335556677778888999999998888774 332 2344566778888888
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (520)
|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+++.-|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---------------------- 180 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---------------------- 180 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH----------------------
Confidence 88888888887754 4445667778888888888888888777666533322222211
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
..|.-+...+....+.+.|..++.+..+.+ +-+...-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+
T Consensus 181 -qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 -QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 112223333333444444444444444432 111222222333444445555555555555544444444444555555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHH
Q 010031 341 YAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY---SGQVKL 415 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~ 415 (520)
|.+.|+.++...++..+.+ ++...-..+...-....-.+.|..++.+-.. -+|+...+..++..-.. .|...+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhh
Confidence 5555555555555554443 2333333333333334444555555444443 26777777777765432 233444
Q ss_pred HHHHHHHcH
Q 010031 416 ALNFFDSMR 424 (520)
Q Consensus 416 a~~~~~~~~ 424 (520)
..-.++.|.
T Consensus 337 sL~~lr~mv 345 (389)
T COG2956 337 SLDLLRDMV 345 (389)
T ss_pred hHHHHHHHH
Confidence 445555554
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.6e-10 Score=103.98 Aligned_cols=440 Identities=11% Similarity=0.077 Sum_probs=235.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHH--HHH--HHHhCCCh
Q 010031 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV--LIR--GLAENSHF 110 (520)
Q Consensus 35 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~--~~~~~~~~ 110 (520)
+......|++++|.+...+++..+ +.+...+..-+-+..+.+.+++|+.+.+.-... .+++. +=+ +..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 333444457888888888888776 344555555555678888888888666543321 11111 123 33467888
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 111 QSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
++|+..++ |..++.. +...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+- -...+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHH
Confidence 88888877 3333332 55555567778888888888888887765321 111111221111 111111 222
Q ss_pred cCCCCCCCCCchhHHHHH---HHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH
Q 010031 189 ETPEKNKSESVLLWNVLI---NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
..... | ..+|..+. -.++..|++.+|+++++...+.-..+ + ..++.. -.++-.++ -..-.
T Consensus 166 ~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l-~~~d~~-eEeie~el----~~Irv 228 (652)
T KOG2376|consen 166 SVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------L-EDEDTN-EEEIEEEL----NPIRV 228 (652)
T ss_pred hccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------h-cccccc-hhhHHHHH----HHHHH
Confidence 22221 1 23443333 33456777777777776552100000 0 000000 00000000 01223
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HhhccCChHH--HHHHH------------HHHHHcCCC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS---ACAKVGALEA--GVRVH------------NYISCNDFG 328 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~------------~~~~~~~~~ 328 (520)
.+..++...|+.++|..+|...+..+ ++|......... +.....++.. +...+ ..+.... .
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k 306 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-K 306 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-H
Confidence 34556667788888888887777764 444432222211 1111111111 11111 1111100 0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-hhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLA--IHGRYEQAIQYFKKMMYSGTEPDG--TVFLAI 403 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l 403 (520)
.....-+.++..| .+..+.+.++........ ...+.+++..+. +...+..+.+++....+. .|.. .+....
T Consensus 307 ~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 307 QAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHH
Confidence 0111112333333 355667777777666532 334444544433 223577888888887764 4443 355556
Q ss_pred HHHHHccCcHHHHHHHHH--------HcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--------CCC-HH
Q 010031 404 LTACWYSGQVKLALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--------TPD-FV 466 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~ 466 (520)
+......|++..|.+++. .+. +.+..|- +...+...+.+.++-+.|..++.+... ++. ..
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 666788999999999999 444 2333444 445677778887776666666555432 221 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.-+...-.+.|+.++|..+++++++.+|++..++..+..+|....
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 34444444567799999999999999999999999999888887643
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=1.2e-10 Score=102.13 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=178.1
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 186 (520)
.|+|.+|..+..+-.+.+-.|- ..|..-.++.-..|+.+.+-..+.+..+.-..++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5788888888877766554332 235555566667788888888888877753345566677777778888888888888
Q ss_pred hccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCH-------HHHHHHHHHHHhcCCHHHHHHHHhc
Q 010031 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNV-------ASWVSLIDGFMRKGDLKKAGELFEQ 255 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (520)
++++.+.+ +.++.......++|.+.|++.....++..+.+ .+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777664 55667777778888888888888888887776 121 2556666666666666666666666
Q ss_pred CCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 256 MPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 256 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
... .++..-..++.-+...|+.++|.++..+..+.+..|+. ...-.+.+.++...-++..+...+.. +.++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 653 34555666777777888888888888877777655551 11223445566665555555544332 23445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 389 (520)
.+.+|...|.+.+.+.+|.+.|+...+ ++..+|+.+..++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556666666666666666666654443 455556666666666666666665555544
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=6.8e-12 Score=106.62 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=199.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (520)
+.+.++|.+.|.+.+|.+.|+..++. .|.+.||..+-..|.+..+.+.|..++.+-.+. ++.+..........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999988876 567778888999999999999999999888765 334555556677788888
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 421 (520)
++.++|.++++...+ .|+.....+...|.-.++++-|+.+|+++.+.|+. +...|..+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998776 35566666677788889999999999999999876 77889999999999999999999999
Q ss_pred HcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 422 SMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 422 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
+... .-..|+ ..+|..+.......|++.-|.+.|+-... .| +...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8874 323454 46788899999999999999999998765 33 4668999998899999999999999999999998
Q ss_pred CcchhHHHHhhh
Q 010031 498 IPQAMSYCQTFM 509 (520)
Q Consensus 498 ~~~~~~~l~~~~ 509 (520)
-.+....++..-
T Consensus 462 m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 462 MAEVTTNLQFMS 473 (478)
T ss_pred ccccccceeEEe
Confidence 877766665543
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1.8e-11 Score=107.80 Aligned_cols=194 Identities=15% Similarity=0.039 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 373 (520)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 334444455555555555555555554432 12334444445555555555555555544432 12334444445555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 452 (520)
..|++++|...+++.......| ....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554421111 12233444444455555555555555544211 12233444455555555555555
Q ss_pred HHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 453 LNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 453 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
...+++... +.+...+..+...+...|+.++|....+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555544332 22333333444444455555555555444443
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=8e-10 Score=106.31 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=191.4
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 010031 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124 (520)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 124 (520)
.++..+...|+.|+-.+|..++..||..|+++.|- +|.-|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46777888999999999999999999999999998 8876653 35567899999988888877665
Q ss_pred CCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC-CCCCCCCchhHH
Q 010031 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVLLWN 203 (520)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 203 (520)
.|...||..|+.+|...|++..- +...+ ....+...+...|.-.....++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~f----e~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILF----EVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHH----HHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 48888999999999999987762 22222 11123344555565555555554432 222333333
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhc-CCHHHHHHHHhcCCC-CCcccHHHHHHHHHhCCChh
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRK-GDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAE 278 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 278 (520)
..+......|-++.+++++..+.. ...... .++-+... ..+++-........+ +++.+|.+++.+-..+|+.+
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 344455667888888888877765 111111 23333322 234444444444444 77889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
.|..++.+|.+.|++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999888888887755 78888899999999999999999999877777666554
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.9e-09 Score=103.79 Aligned_cols=441 Identities=12% Similarity=0.058 Sum_probs=278.3
Q ss_pred hcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCC
Q 010031 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 93 (520)
+.+..+..+++-|+..+|..++.-|+..|+.+.|- ++..|.-...+....+++.++....+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34455677889999999999999999999999998 9998888888888999999999999999888775 688
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHH-hCCCCChhHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLAD 172 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 172 (520)
..+|..|..+|.+.||... ++..++ ....+...+...|.-.....++..+.= -+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999766 333332 122244445555555544444443211 12223332 3444
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh-cCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAG 250 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 250 (520)
.....|-++.+.+++..+...... .+... .++-+.. ...+++-..+.....+ +++.++.+++.+-...|+++.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 455667788888888776653211 11111 2333333 3345666666666666 99999999999999999999999
Q ss_pred HHHhcCCCCCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH-----------
Q 010031 251 ELFEQMPEKGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA----------- 314 (520)
Q Consensus 251 ~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----------- 314 (520)
.++.+|.+.+. ..|-.++. .++...+..++.-|.+.|+.|+..|+...+..+.+.|....
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~ 300 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGF 300 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhh
Confidence 99999998873 23433333 78888899999999999999999998877766665433111
Q ss_pred -------------HHHHHHH------------HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Ch
Q 010031 315 -------------GVRVHNY------------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DL 362 (520)
Q Consensus 315 -------------a~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 362 (520)
|.+.++. ..=.|+.....+|...+. ...+|.-++..++...+..| ++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 1111111 000133333333433222 23356666666666655543 33
Q ss_pred hHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHCCCCCCH-----------------------
Q 010031 363 LTWTAMIWGLAIHGR----------------------YEQAIQYFKKMMYSGTEPDG----------------------- 397 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~~p~~----------------------- 397 (520)
..|..++.-|.+.-+ ..+..+.... ..||.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 344444433332211 1111111111 12221
Q ss_pred -----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC-----CCHHH
Q 010031 398 -----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-----PDFVI 467 (520)
Q Consensus 398 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 467 (520)
..-+.++..|++.-+..+++..-++.. +.-+ ...|..|+..+....+.+.|..+.++...+ -|..-
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 123445555555555556555444443 2211 257788888888888888888888887642 34445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+..+.+.+.+.+....+..+++++.+.
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 667777788888888888888888763
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.6e-10 Score=101.70 Aligned_cols=191 Identities=14% Similarity=0.179 Sum_probs=103.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+... .+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 45555556666666666666666655542 22344455555555666666666666666555432 23344555555566
Q ss_pred hcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHH
Q 010031 343 KCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 416 (520)
..|++++|.+.++..... ....+..+..++...|++++|...+++..+. .|+ ...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666554431 2234444555556666666666666665553 232 33555555556666666666
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666665532 1233444445555555666666666555443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=3.3e-09 Score=100.85 Aligned_cols=430 Identities=15% Similarity=0.085 Sum_probs=255.7
Q ss_pred hCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccH
Q 010031 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTY 132 (520)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~ 132 (520)
..+.-|+.+|..+.-+....|+++.+.+.|++..+ .....|+.+-..+...|.-..|+.+++.-......| +...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556888999998889999999999999998765 344578888888999999999999998876543234 33344
Q ss_pred HHHHHHHh-ccCChhhHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhc-----------CChhHHHHHhccCCCCCCC
Q 010031 133 PFVSKSVA-SLSLLSLGRGLHCLIVKSG--V--EYDAFVRVHLADMYVQL-----------GKTRGAFKVFDETPEKNKS 196 (520)
Q Consensus 133 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 196 (520)
...-..|. +.+..+++...-.+++... . ...+..|..+.-+|... ....++++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 43444443 4567777777766666521 1 12333444444444321 12345666777776654 3
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHHHH
Q 010031 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMIN 269 (520)
Q Consensus 197 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~ 269 (520)
.|+.....+.--|+..++++.|+...++..+ .+...|..+.-.+...+++.+|+.+.+..... |......-+.
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3444444444556677778888777776654 45667777777777777777777776654321 1111111112
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHH---hc
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC--NDFGLKGAIGTALVDMYA---KC 344 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~---~~ 344 (520)
.-..-++.++++.....++.. --+...+. ..++-....+....+.- ....-...++..+..... +.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222356666666665555431 00000000 00111111111111100 011111222222222111 11
Q ss_pred CCHHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~ 417 (520)
-..+.....+.....|+ ...|......+.+.++.++|...+.+... +.|-.. .|......+...|...+|.
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 11111111111122222 23566677778888888899888888776 445443 6666666777888899999
Q ss_pred HHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHH--HHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 418 NFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALN--FINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+.|..... +.|+ +.+..++..++.+.|+..-|.. ++..+.. +-+...|..+...+.+.|+.+.|.+.|.-++
T Consensus 705 ~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 705 EAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 98888763 4555 5677889999999998777766 7777665 3457789999999999999999999999999
Q ss_pred cCCCCCcch
Q 010031 493 SLNLSIPQA 501 (520)
Q Consensus 493 ~~~p~~~~~ 501 (520)
++++.+|..
T Consensus 782 qLe~S~PV~ 790 (799)
T KOG4162|consen 782 QLEESNPVL 790 (799)
T ss_pred hhccCCCcc
Confidence 988887753
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=9.4e-09 Score=88.88 Aligned_cols=438 Identities=10% Similarity=0.036 Sum_probs=211.1
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChh
Q 010031 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQ 111 (520)
Q Consensus 35 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 111 (520)
+.-+.+..|++.|..+++.....+..-...+-.=+..++-+.|++++|+.++.-+.. ++...+-.+...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344455667778877777665444322222222233445578888888888876543 44455555555555567777
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
+|..+-.+..+ ++-.-..++....+.++-++.....+.+.. +..--.+|.+.....-.+.+|++++.+..
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776555422 222233344444566666666555555433 22333445555556667888899888877
Q ss_pred CCCCCCCchhHHH-HHHHHHhcCChhHHHHHHhhCCC--CCHH-HHHHHHHHHHh--cCCHHHHHHHHhcCCCCCcccHH
Q 010031 192 EKNKSESVLLWNV-LINGCSKIGYLRKAVELFGMMPK--KNVA-SWVSLIDGFMR--KGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 192 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
.. .|+-...|. +.-+|.+..-++-+.+++....+ ||.. .-|.......+ .|+..+ .-..++.......|.
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE--DEKKELADNIDQEYP 254 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH--HHHHHHHhcccccch
Confidence 65 344444443 44567777777777777766554 4432 33333322222 222211 111111111111111
Q ss_pred HHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 010031 266 AMINGFSQN-----GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD- 339 (520)
Q Consensus 266 ~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 339 (520)
.+.-+++. .+-+.|++++-.+.+. .|.. -..++--|.+.+++.+|..+.+++.- ..|...+...++.
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a 327 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA 327 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH
Confidence 11111111 1234455554444332 2221 12233335555666666555543320 0111111111111
Q ss_pred ----HHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010031 340 ----MYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (520)
Q Consensus 340 ----~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 410 (520)
-........-|.+.|+-.-. ..+.--.++..++.-..++++.+..+.....- +.-|...-..+..+.+..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHh
Confidence 11111223344444443332 12222334444455555566666655555543 222223333455666666
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHH-HHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHH-TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF-CACRTHKDTKIAKIAL 488 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~ 488 (520)
|++.+|.++|-.+. ...+ .+..+| ..|.++|.++++.+-|.+++-++..+.+..+...++ ..|.+.+++--|-+.|
T Consensus 407 gny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666665554 1111 222333 345566666666666666666555433333333333 3466666666666666
Q ss_pred HHHhcCCC
Q 010031 489 QSSCSLNL 496 (520)
Q Consensus 489 ~~~~~~~p 496 (520)
+.+-.++|
T Consensus 485 d~lE~lDP 492 (557)
T KOG3785|consen 485 DELEILDP 492 (557)
T ss_pred hHHHccCC
Confidence 66555555
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=5.3e-08 Score=90.90 Aligned_cols=27 Identities=11% Similarity=0.264 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
.|...+......+-++-++.+|++..+
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344444444444444444444444433
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=2.6e-10 Score=112.76 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=149.4
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh---------ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 276 EAEKALAMFFQMLDAGVRAN-DFTVVSALSACA---------KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+.+. .+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 356788888887765 343 334444433332 23457788888888877653 45667777777888888
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFD 421 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 421 (520)
++++|...+++..+ | +...+..+..++...|++++|...++++.+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888887665 3 445677788888888888888888888887 455543 33334445666788888888888
Q ss_pred HcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC---C
Q 010031 422 SMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV-IWGALFCACRTHKDTKIAKIALQSSCSL---N 495 (520)
Q Consensus 422 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 495 (520)
++.... +|+ +..+..+..+|...|++++|...++++.. .|+.. .++.+...+...| ++|...++++++. .
T Consensus 431 ~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 876422 343 44566777888888888888888887654 34433 3444445566666 4777777777653 3
Q ss_pred CCCcchhHHHHhhhhhccCCC
Q 010031 496 LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~~~ 516 (520)
|.++.. ...+|.-.||++
T Consensus 507 ~~~~~~---~~~~~~~~g~~~ 524 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAI 524 (553)
T ss_pred hcCchH---HHHHHHHHhhhH
Confidence 444433 444554445433
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=9e-09 Score=97.97 Aligned_cols=353 Identities=15% Similarity=0.044 Sum_probs=239.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CC-HHHH
Q 010031 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KN-VASW 233 (520)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~ 233 (520)
.+..|..+|..|.-+....|+++.+.+.|++.... .-.....|+.+...+...|.-..|..+++.... |+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45678889999999999999999999999887654 234567888888899999999999999988776 22 2333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhcCCC-----C---CcccHHHHHHHHHhC-----------CChhHHHHHHHHHHHcC-C
Q 010031 234 VSLIDGFM-RKGDLKKAGELFEQMPE-----K---GVVSWTAMINGFSQN-----------GEAEKALAMFFQMLDAG-V 292 (520)
Q Consensus 234 ~~l~~~~~-~~~~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~-~ 292 (520)
...-..|. +.+..++++..-.++.. . ....|..+.-+|... ....++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 34666666555544432 1 134455555444332 12456777888877654 2
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---------
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD--------- 361 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------- 361 (520)
.|+...| +.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.... ++
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3333333 3334667788999999999999887778889999998889999999999888775443 11
Q ss_pred ------------hhHHHHHHHHHHH-----------------------cCCHHHHHHHHHHH--------HHCC------
Q 010031 362 ------------LLTWTAMIWGLAI-----------------------HGRYEQAIQYFKKM--------MYSG------ 392 (520)
Q Consensus 362 ------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~------ 392 (520)
..|...++..+-. .++..+|.+....+ ...|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0122222111110 01111222222111 0011
Q ss_pred ---CC--CCH------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 393 ---TE--PDG------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 393 ---~~--p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+. |+. ..|......+...++.++|...+.+.... .+.....|......+...|..++|.+.|.....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 221 13445556677888889998888887642 244566788888888999999999999988664
Q ss_pred -CC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 -TP-DFVIWGALFCACRTHKDTKIAKI--ALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 -~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.| ++.+..++...+.+.|+..-|.. ++..+++++|.++.+|.++|.++.+.||..
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 45 46788999999999998888888 999999999999999999999999999965
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=6.2e-12 Score=79.40 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=40.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=2.7e-09 Score=96.51 Aligned_cols=230 Identities=13% Similarity=-0.021 Sum_probs=158.6
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 274 NGEAEKALAMFFQMLDAG-VRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|+...+... .++..++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777777542 2222 34466666778888999999999998887653 4678888899999999999999
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 351 SLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 351 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
...|+...+ | +..+|..++.++...|++++|.+.+++..+ ..|+..........+...++.++|...+++....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999988765 3 456788888899999999999999999988 4565442222222344578899999999776532
Q ss_pred CCCCChhHHHHHHHHHhccCChHHH--HHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC-CC
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKA--LNFINKMPE-T-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL-SI 498 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 498 (520)
.+|+...+ .+. +...|+..++ .+.+.+... . .....|..+...+...|++++|+..|+++++.+| +.
T Consensus 195 -~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23433222 233 3334555433 333332221 1 2345788999999999999999999999999997 55
Q ss_pred cchhHHHHhhhhh
Q 010031 499 PQAMSYCQTFMQQ 511 (520)
Q Consensus 499 ~~~~~~l~~~~~~ 511 (520)
+.....+......
T Consensus 271 ~e~~~~~~e~~~~ 283 (296)
T PRK11189 271 VEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444443
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=7.6e-08 Score=90.06 Aligned_cols=436 Identities=11% Similarity=0.051 Sum_probs=262.0
Q ss_pred hhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccC-
Q 010031 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT- 90 (520)
Q Consensus 12 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 90 (520)
.+...+.+.. ..|.+..+.....-.|...|+.++|....+..++.. .-+...|..+.-.+....++++|+++|....
T Consensus 26 gLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 26 GLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred HHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3344444444 446667777777777788888888888777776654 3355666666666677788888888888653
Q ss_pred --CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCChhH
Q 010031 91 --PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGV-EYDAFV 166 (520)
Q Consensus 91 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 166 (520)
+.|...|.-+--.-++.++++...+.-....+. .|+. ..|..+..+..-.|+...|..+++...+... .|+...
T Consensus 104 ~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 104 IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 356677776666667777888877777777763 3433 4566677777778888888888888877652 355555
Q ss_pred HHHHH------HHHHhcCChhHHHHHhccCCCCCCCCCchhH-HHHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHH
Q 010031 167 RVHLA------DMYVQLGKTRGAFKVFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLI 237 (520)
Q Consensus 167 ~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~ 237 (520)
+.... ....+.|.++.|.+.+..-... ..|...+ ..-...+.+.+++++|..++..+.. ||..-|...+
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 44332 3345677788887777655433 2222222 3345567788888999888888877 5555554443
Q ss_pred -HHHHhcCCHHHHH-HHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 010031 238 -DGFMRKGDLKKAG-ELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 238 -~~~~~~~~~~~a~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (520)
.++.+-.+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++- +..+...|-.....
T Consensus 260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHh
Confidence 3333333333333 555544331 110000001111112223344556667777776553 33333333322222
Q ss_pred HHHHHHHHHHHH----cC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHH
Q 010031 313 EAGVRVHNYISC----ND----------FGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLL---TWTAMIWGLA 373 (520)
Q Consensus 313 ~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~ 373 (520)
+-..++.-.+.. .| -+|....| -.+++.|-..|+++.|...++......+. .|..-.+.+.
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 211111111111 10 13444333 45677888899999999999988874332 4445567788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhH--------HH--HHHHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH--------HT--VVVNLL 443 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~--~l~~~~ 443 (520)
..|++++|..++++..+.. .||...-..-.....+++..++|.++.....+ .|. +... |- .=..+|
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-~~~--~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR-EGF--GAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh-ccc--chhhhHHHhhhHHHhHhhhHHH
Confidence 8899999999999988743 34444443566667788999999999988874 333 2211 11 113567
Q ss_pred hccCChHHHHHHHhhCC
Q 010031 444 SRVGQVDKALNFINKMP 460 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~ 460 (520)
.+.|++-.|++-|..+.
T Consensus 493 ~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 78888877776665543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=2e-11 Score=77.06 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888864
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=4e-10 Score=111.44 Aligned_cols=199 Identities=13% Similarity=0.036 Sum_probs=157.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYA---------KCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 377 (520)
++.++|...+++..+... .+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456789999999987653 24455655555544 23458899999998776 3 56788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
+++|...|+++.+ ..|+.. .+..+...+...|++++|...+++..+. .|+. ..+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 467654 7888888999999999999999999853 4543 2334455557778999999999
Q ss_pred HhhCCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 456 INKMPE--TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 456 ~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++++.. +|+ +..+..+..++...|+.++|...++++....|++......++..|...|+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 998754 354 44567777888899999999999999999999999999999999888876
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=1.6e-07 Score=87.92 Aligned_cols=438 Identities=13% Similarity=0.061 Sum_probs=278.9
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVF 119 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 119 (520)
.......+.+.+.+.- +-...+..-..-.+...|+-++|........+ .+.++|+.+.-.+-...++++|++.|..
T Consensus 22 QYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4455555555555532 22223332223335567899999988876654 5667899888888888999999999999
Q ss_pred hhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-CCC
Q 010031 120 MLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-KSE 197 (520)
Q Consensus 120 m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 197 (520)
... +.||. ..+.-+--.-++.++++........+.+.. +.....|..++.++.-.|+...|..++++..+.. ..|
T Consensus 101 Al~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 101 ALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 988 44554 344444444467788888888887777743 2345678888888899999999999988877653 245
Q ss_pred CchhHHHHH------HHHHhcCChhHHHHHHhhCCC--CCHH-HHHHHHHHHHhcCCHHHHHHHHhcCCCCC--cccHHH
Q 010031 198 SVLLWNVLI------NGCSKIGYLRKAVELFGMMPK--KNVA-SWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTA 266 (520)
Q Consensus 198 ~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 266 (520)
+...+.... ....+.|..++|.+.+..-.. -|.. .--.-...+.+.+++++|..++..+..++ ...|..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 655554432 335667888888888876665 2332 23445677889999999999999987654 344443
Q ss_pred -HHHHHHhCCChhHHH-HHHHHHHHcCCCCCHHHHHH-HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 267 -MINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 267 -l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
+..++.+-.+..++. .+|....+. .|-...-.. =+.......-.+....++....+.|+++ ++..+...|-.
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 444444333444444 556555443 221111111 1111222223344555666677777643 33333333322
Q ss_pred cCCHHHHHH----HHhcCC--------------CCChh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 010031 344 CGNIEAASL----VFGETK--------------EKDLL--TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLA 402 (520)
Q Consensus 344 ~~~~~~a~~----~~~~~~--------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ 402 (520)
-...+-..+ +...+. .|... ++..+++.+-..|+++.|..+++..+.+ .|+.. .|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 221111111 111111 12333 4455778888999999999999999984 78776 7777
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCC-CH--------HHHHHHH-
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DF--------VIWGALF- 472 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~l~- 472 (520)
-.+.+...|+++.|..++++..+ . -.+|..+-..-+.-..++++.++|.+++....... +. -.|..+-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~e-l-D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQE-L-DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 77889999999999999999974 2 25666555566777789999999999988876421 11 1344443
Q ss_pred -HHHHHcCCHHHHHHHHHHHhc
Q 010031 473 -CACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 473 -~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+|.+.|++..|++-+..+-+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhHHH
Confidence 458888888888877766643
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.4e-09 Score=88.89 Aligned_cols=404 Identities=9% Similarity=0.032 Sum_probs=220.7
Q ss_pred HHHHhcCCChHHHHHHhcccCC---CCcchHH-HHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 010031 70 ISSASLHKSIDYALSIFDHFTP---KNLHIFN-VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 145 (520)
+.-+....++..|+.+++--.. ......+ .+...+.+.|++++|+..|..+.+.. .|+...+..|.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 4455566778888777764322 1111222 23445567788888888877766643 34444444454444456677
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
.+|..+-... +.++..-..|.....+.++-++-..+-+.+.+. ..--.+|.......-.+.+|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655432 223333344445555666666555554444322 222334444444455667777777776
Q ss_pred CC--CCHHHHHH-HHHHHHhcCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 226 PK--KNVASWVS-LIDGFMRKGDLKKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 226 ~~--~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
.. |+....|. +.-+|.+..-++-+.++++--.+ || +++-|.......+.=.-..|.+-.+++.+.+-..-+..-
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 65 33333332 22345555555555555443321 22 334444444333332223333334444433211111100
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG--- 376 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--- 376 (520)
..+-+-+.--.+-+.|.+++--+.+. -+..-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 00001111123445666665544432 12233346667899999999999999887644443333233333333
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 377 ----RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 377 ----~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
...-|...|+-.-+++..-|.. --.++..++.-..++++.+.++..+.. +- ..|....-.+..+++..|.+.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF-~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YF-TNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCcchhhhHHHHHHHHhcChHH
Confidence 3555667776665555544433 334455666777889999999999874 42 3333333468899999999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 010031 452 ALNFINKMPET--PDFVIWGALF-CACRTHKDTKIAKIALQS 490 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 490 (520)
|.++|-++..+ .|..+|.+++ ++|.+.|..+.|-+++-+
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99999887752 3556666554 668889998877655433
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.9e-08 Score=92.10 Aligned_cols=412 Identities=13% Similarity=0.050 Sum_probs=238.4
Q ss_pred HHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhh
Q 010031 72 SASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSL 147 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 147 (520)
+....|+++.|+..|-+.. ++|-+.|..-..+|+..|++++|++=-.+-++ +.|+.. .|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 3456778888888776543 45666777777778888888877776665555 456543 67777777777778888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH-----HHHHhcCChhHHHHHH
Q 010031 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NGCSKIGYLRKAVELF 222 (520)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~ 222 (520)
|...|..-++.. +.+...++.+..++ ..+.+. +.. -.++..|..+. +.+.....+..-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 887777766643 23455666666666 111111 110 01122222111 1111111111111111
Q ss_pred hhCCCCCHHH---HHHHHHHHHhcCCHHH-HHHHHhc-----CCCC------------C----------cccHHHHHHHH
Q 010031 223 GMMPKKNVAS---WVSLIDGFMRKGDLKK-AGELFEQ-----MPEK------------G----------VVSWTAMINGF 271 (520)
Q Consensus 223 ~~~~~~~~~~---~~~l~~~~~~~~~~~~-a~~~~~~-----~~~~------------~----------~~~~~~l~~~~ 271 (520)
+.-.. +... ...++.+.......+. ....-.. +..| | ......+.++.
T Consensus 156 ~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 11110 0000 0111111111000000 0000000 0000 0 12355667777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH-------HHHHHHHHhc
Q 010031 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-------TALVDMYAKC 344 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~ 344 (520)
.+..++..|++-+....... -+..-++....++...|.+......-....+.|.. ...-| ..+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 77788888888888877753 33334445555677777777766666655554432 11111 2234466667
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
++++.++..|.+...+... -....+....+++....+...- +.|... -...-...+.+.|++..|+..|.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7788888887775442111 1112233444555555544443 344432 2222355678899999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+... +.|...|....-+|.+.|.+..|++-.+...+ .|+ ...|.--..++....++++|.+.|+++++.+|++..+
T Consensus 385 Ikr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 8532 55678999999999999999999998888765 344 4466666777888899999999999999999999999
Q ss_pred hHHHHhhhhh
Q 010031 502 MSYCQTFMQQ 511 (520)
Q Consensus 502 ~~~l~~~~~~ 511 (520)
...+..++..
T Consensus 463 ~~~~~rc~~a 472 (539)
T KOG0548|consen 463 IDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=5.1e-10 Score=91.00 Aligned_cols=143 Identities=16% Similarity=0.111 Sum_probs=64.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
|.-.|...|+...|..-+++.++ ..|+.. ++..+...|.+.|+.+.|.+.|++..... +-+..+.|.....++..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence 33444444444444444444444 234333 44444444444455444444444444211 12233444444444444
Q ss_pred CChHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 447 GQVDKALNFINKMPETPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 447 g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
|++++|...|++....|. ..+|..+..+..+.|+.+.|...++++++++|++|.....++....+.|+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 455555544444433221 22444444444444555555555555555555444444444444444443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=98.08 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=183.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 375 (520)
-..+..+|.+.|.+.+|...++..++. .|.+.+|..|-+.|.+..+++.|+.++.+... | |+.....+.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356888999999999999999988776 46778888899999999999999999998876 4 444445677788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
++.++|.++|++..+. .|+ .....++...|.-.++.+-|+.+++++.+ .| ..++..|+.+.-++.-.++++-++.
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 9999999999999884 454 44777777888899999999999999985 55 3567889999999999999999999
Q ss_pred HHhhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 455 FINKMPE---TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 455 ~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
-|++... .|+ ..+|..+.....-.||+..|.+.|+-++..+|++..+++.|+.+-.+.|+-+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 9988764 244 56899999999999999999999999999999999999999999999998553
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.3e-07 Score=85.95 Aligned_cols=168 Identities=8% Similarity=0.064 Sum_probs=100.1
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCC-CC-ChHHHHHHHHHHh--cCCChHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FA-SSRITTQLISSAS--LHKSIDYA 82 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~--~~~~~~~A 82 (520)
+.+++|......+.... |.....+..-+-.+-..+++++|..+.+ ..+. .. .... +=.+|| +.+..++|
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~---fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFF---FEKAYCEYRLNKLDEA 98 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhh---HHHHHHHHHcccHHHH
Confidence 45566666666666544 4445555555555666667777763333 2321 11 1111 234444 78999999
Q ss_pred HHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH-hccCChhhHHHHHHHHHHhCCC
Q 010031 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLSLLSLGRGLHCLIVKSGVE 161 (520)
Q Consensus 83 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~ 161 (520)
+..++...+.+..+...-.+.+.+.+++++|+++|+.+.+.+. ++ +...+++- ...+-...+. .+......
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~~----~~q~v~~v 170 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQVQ----LLQSVPEV 170 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhHH----HHHhccCC
Confidence 9999977666766777788899999999999999999988654 33 22222211 1111111111 12222222
Q ss_pred CChhHHH---HHHHHHHhcCChhHHHHHhccC
Q 010031 162 YDAFVRV---HLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 162 ~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
| ..+|. .....++..|++.+|+++++..
T Consensus 171 ~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 171 P-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred C-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 22333 3455677899999999999877
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=9.5e-09 Score=83.77 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=140.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
...+.-.|...|+...|..-+++.++.+ +.+..++..+...|.+.|..+.|.+.|++..+ .+-.+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455666677777777777666654 23455666666677777777777777766554 3445667777777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|++++|...|++....-.-|.. .+|..+.-+..+.|+.+.|.+.|++..+. .|+ ......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888774333333 37888887778888888888888887752 333 446667778888888888888
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++++... .++..+....+..-.+.||-+.+.+.=.++....|.++..-..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 88887654 3566666666667778888888888777777888887765443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=1.6e-07 Score=89.90 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=111.5
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcch-HHHHHHHHHhC---
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHI-FNVLIRGLAEN--- 107 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~--- 107 (520)
-++++...|+++.|...+....+. +.............+.+.|+.++|..++..+.. |+-.. |..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345566666666666666543322 233345555556666666666666666666544 22222 23333333111
Q ss_pred --CChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 010031 108 --SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184 (520)
Q Consensus 108 --~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 184 (520)
.+.+...++|+++... -|.......+.-.+.....+ ..+...+..+...|+ +.+++.|-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHH
Confidence 2345555566655442 14333333222222221111 233334444444443 224444444444333333333
Q ss_pred HHhccCC----CCC----------CCCCch--hHHHHHHHHHhcCChhHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCC
Q 010031 185 KVFDETP----EKN----------KSESVL--LWNVLINGCSKIGYLRKAVELFGMMPK--KN-VASWVSLIDGFMRKGD 245 (520)
Q Consensus 185 ~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~ 245 (520)
.++.... ..+ -+|+.. ++..+...|...|++++|+.++++..+ |+ +..|..-...+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 3332221 111 012221 223334444555555555555555544 32 3344555555555555
Q ss_pred HHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010031 246 LKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 246 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 291 (520)
+++|.+.++....-| -..-+-.+..+.++|+.++|.+++......+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555544433 2233334444555555555555555544433
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=4e-09 Score=99.51 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=143.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHc-----CC--CCChh
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA-----G-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCN-----DF--GLKGA 332 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 332 (520)
+...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|+++... |. +.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444555555555555555444332 1 1222222 222444555666666666666655331 11 11123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH-
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----------KDL-LTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEPDG- 397 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~- 397 (520)
+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344555566666666666555544332 122 23556677788888899998888876542 122332
Q ss_pred ---HHHHHHHHHHHccCcHHHHHHHHHHcHhhc-----CCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-------
Q 010031 398 ---TVFLAILTACWYSGQVKLALNFFDSMRFDY-----FIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE------- 461 (520)
Q Consensus 398 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 461 (520)
.++..|...|...|++.+|.++++++.... +..+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 388999999999999999999999886432 11222 34677888999999999999888887542
Q ss_pred -CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 462 -TPD-FVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 462 -~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.|+ ..+|..|..+|...|+++.|.++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 244 35789999999999999999999999873
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=6e-08 Score=92.86 Aligned_cols=175 Identities=12% Similarity=-0.004 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc----C----------CCCCh--hHHHHHHHHHHh
Q 010031 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN----D----------FGLKG--AIGTALVDMYAK 343 (520)
Q Consensus 280 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 343 (520)
+..++..+...|+++ +|..+-..|...........++...... + -.|+. .++..+.+.|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 344455555666432 4444444455444444444444443321 0 11222 233555666777
Q ss_pred cCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 420 (520)
.|++++|.++++.... |. +..|..-...+-..|++.+|.+.++..+..... |...-+..+..+.++|++++|.+++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777776665 32 345666677777777777777777777764221 3344455556667777777777777
Q ss_pred HHcHhhcCCCCChhHH--------HHHHHHHhccCChHHHHHHHhhC
Q 010031 421 DSMRFDYFIEPSVKHH--------TVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 421 ~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
....+. +..|....+ ...+.+|.+.|++..|++.|..+
T Consensus 286 ~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 286 SLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777642 222322111 23456677777777776665544
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=4.5e-09 Score=93.59 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=148.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMY 341 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 341 (520)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556667777665433 3333322 555555555544444434444444444333222222 2223333334556
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHH
Q 010031 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLAL 417 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 417 (520)
...|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHH
Confidence 6778899888888776 5667777788999999999999999999987 444543 3444444432 33689999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT-KIAKIALQSSCSL 494 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 494 (520)
-+|+++... +++++.+.+.++.+....|++++|.+++++... +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998753 467888899999999999999999999988654 34566777888887888877 7788899998888
Q ss_pred CCCCcchh
Q 010031 495 NLSIPQAM 502 (520)
Q Consensus 495 ~p~~~~~~ 502 (520)
.|+.|-.-
T Consensus 266 ~p~h~~~~ 273 (290)
T PF04733_consen 266 NPNHPLVK 273 (290)
T ss_dssp TTTSHHHH
T ss_pred CCCChHHH
Confidence 99877554
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=3.3e-09 Score=96.01 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=144.7
Q ss_pred ccCChHHHHHHHHHHHHcCC-C--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHH
Q 010031 308 KVGALEAGVRVHNYISCNDF-G--LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 381 (520)
..+..+.+...+.+++.... . .....+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33566777777777775321 1 2245677788889999999999999998765 3567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 382 IQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...|++..+ +.|+. .++..+..++...|++++|.+.+++..+. .|+......+...+...++.++|...+++..
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998 57764 47888888899999999999999998853 4544322233334456788999999997644
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------cCCCCCcchhHHHHhhhhhccCCC
Q 010031 461 ETPDFVIWGALFCACRTHKDTKIAKIALQSSC-------SLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
...++..|. ........|+..++ +.++.+. ++.|+.+.+|.++|.++.+.|+.+
T Consensus 193 ~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 193 EKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred hhCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 321222232 12233345555433 2333333 456778889999999999999865
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.8e-07 Score=78.14 Aligned_cols=339 Identities=12% Similarity=0.094 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH-HHHHH
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMY 174 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 174 (520)
+.+.+..+++..++..|++++.--.+.. | +....+.+..+|....++..|...++++...- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 5555666666667777777666655532 3 44455555556666666777777777665532 33333221 23445
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH--HHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--CSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++... .+..+.+...-...+.|+.+.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 5666666666666666542 111111111111 2234555555555555553 333333333333445555555555
Q ss_pred HHhcCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH---HHH--HH
Q 010031 252 LFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR---VHN--YI 322 (520)
Q Consensus 252 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---~~~--~~ 322 (520)
-|+...+-+ ...|+.-+ ++.+.|+++.|++...++++.|++..+.. ..|...+..+ +-+ .|
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCchhcccchHHH
Confidence 555544422 23343332 23344555555555555555554322210 0000000000 000 00
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 397 (520)
..++ -...+|.-...+.+.|+++.|.+.+.+|+.+ |++|...+.-.= ..+++-+..+-++-+...+.- ..
T Consensus 236 h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 236 HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-Ch
Confidence 0000 0112233334467889999999999999863 566655543221 235566666666666664332 34
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC-CCChhHHHHHHHHHh-ccCChHHHHHHHhhC
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPSVKHHTVVVNLLS-RVGQVDKALNFINKM 459 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 459 (520)
.||..++-.||+..-++.|-.++.+-.. ..+ -.+...|+ |++++. -.-..++|.+-++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 5999999999999999988888765431 111 12233333 333333 334556665555443
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=2.5e-07 Score=80.01 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH---HHHHhcCChhHHHHHHhhCCC--CCHHHH-HHHHH
Q 010031 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI---NGCSKIGYLRKAVELFGMMPK--KNVASW-VSLID 238 (520)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~ 238 (520)
.-..-+...+...|++..|+.-|....+. |+..|.++. ..|...|+...|+.-+.+..+ ||-..- ..-..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 33444666667777777777777666654 333343332 345556666655555555544 332211 11123
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHH
Q 010031 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318 (520)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 318 (520)
.+.+.|.+++|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...++..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHH
Confidence 445555555555555554432210 000011100000000 011122334455667788888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010031 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (520)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 395 (520)
...+++.. +.+...+..-..+|...|++..|+.-++... ..+...+.-+-..+...|+.+.++...++-.+ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 88777654 3677777777888888888888876655443 35666666667777788888888888888777 577
Q ss_pred CHH-H---HHHH---------HHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHh
Q 010031 396 DGT-V---FLAI---------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 396 ~~~-~---~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
|.. . |..| +......+++.++++..+...+. .|. ...+..+-.++...|++-+|+....
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 764 2 2111 12234567888888888887643 343 2345567778888999999999999
Q ss_pred hCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 458 KMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 458 ~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++.. .|+ ..++.--..+|.-...++.|+.-|+++.+.+|+|..+-.-+-.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 8775 454 66888888889999999999999999999999998876555443
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.7e-08 Score=95.40 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCN-----DF-GLKG-AIGTALVDMYAKCGNIEAASLVFGETKE-------K- 360 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~- 360 (520)
..+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667888999999999999999987654 21 1222 2234577889999999999999988764 1
Q ss_pred C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CCC-CCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcC--
Q 010031 361 D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMY---S--GTE-PDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYF-- 428 (520)
Q Consensus 361 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 428 (520)
+ ..+++.|..+|.+.|++++|...+++..+ + |.. |... .++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 24788888999999999999988887654 1 222 2222 566777788999999999999987754221
Q ss_pred CCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-------C--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 429 IEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE-------T--PD-FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 429 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+.++ ..+++.|...|...|++++|.++++++.. + +. ...++.+...|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 36889999999999999999999998753 1 22 346778888899999999999999998653
Q ss_pred ----CCCCc---chhHHHHhhhhhccCCC
Q 010031 495 ----NLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 495 ----~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
.|++| ..+..|+..|...|+-+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 45544 56788999999999854
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=9.4e-07 Score=85.09 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=62.7
Q ss_pred cCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-----------CCc-chHHHHHHHHHhCCC
Q 010031 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-----------KNL-HIFNVLIRGLAENSH 109 (520)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~ 109 (520)
|+++.|.+-...+. +..+|..+.+++.+..+++-|.-++-.|.. .|. ..-......-...|.
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 45555544443332 235566666666666666666555554432 011 111112222344566
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhcc
Q 010031 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 189 (520)
.++|..+|++-.+. ..+=..|-..|.|++|.++-+.=-+ + .=..||.....-+-..+|.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 66666666665552 2222334455666666655442111 1 1122444445555555666666666654
Q ss_pred C
Q 010031 190 T 190 (520)
Q Consensus 190 ~ 190 (520)
.
T Consensus 884 ~ 884 (1416)
T KOG3617|consen 884 A 884 (1416)
T ss_pred c
Confidence 3
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.2e-07 Score=80.61 Aligned_cols=386 Identities=13% Similarity=0.072 Sum_probs=238.4
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcc-hHHHHHHHHHhCC-ChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLH-IFNVLIRGLAENS-HFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
+...-...+.+|...++-+.|...+...++.-.. --|.++.-+...| +..++.--+.+.... . | ... ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-c-p--~aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-C-P--MAL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-c-c--hHH-HHHHHH
Confidence 4455667788888889999999998888764333 3344444333333 222222222222211 0 0 000 011111
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCChhHHHHH--hccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ--LGKTRGAFKV--FDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
.+.+ +..+...-..|.....+|...+....+.+++. .++...|... +-+.... ++.|+.....+..++...|+.
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~-lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-LRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-CCccHHHHHHHhhhhhhhcCc
Confidence 1110 01111111122222333444444444444433 3333333333 3232222 456777788888899999999
Q ss_pred hHHHHHHhhCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 216 RKAVELFGMMPKKNVASWVS---LIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
++|...|++..-.|+.+... ..-.+.+.|+.++...+...+...+ ...|..-+......+++..|+.+-++.++
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998877644433222 2333456677777776666655433 23454555556677888888888888877
Q ss_pred cCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHH
Q 010031 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWT 366 (520)
Q Consensus 290 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 366 (520)
.. +-+...+..-...+...++.+.|.-.|+...... +.+...|..|+.+|...|++.+|.-+-+...+ .+..+..
T Consensus 329 ~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred cC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence 53 3344555555566778899999998888887654 35778899999999999999988766554333 2333333
Q ss_pred HHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 367 AMI-WGLA-IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 367 ~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+. ..+. .-.--++|..++++... +.|+.. ..+.+...|...|....++.++++... ..||...++.|.+.+
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHH
Confidence 332 1121 12234788888888777 678776 777788889999999999999999875 368999999999999
Q ss_pred hccCChHHHHHHHhhCCC
Q 010031 444 SRVGQVDKALNFINKMPE 461 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~ 461 (520)
...+.+++|++.|.....
T Consensus 482 ~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 999999999999988664
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5e-06 Score=82.02 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
+.+|.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.++.-..++...+
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444443332 4577777777777777777765533 2355677777888888888887777777776
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 385 (520)
+...+|.. -+.|+-+|++.++..+-.+++.- ||..-......-|...|.++.|.-+|
T Consensus 1161 kk~~E~~i--d~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1161 KKVREPYI--DSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HhhcCccc--hHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 66544443 34677777777777766655432 44433344444444444444444333
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=1.4e-06 Score=82.90 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=111.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
+-.....|.+|+.+++.+++.+. -..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33445667777777776666532 2234556667777777777777776532 234456677777777777
Q ss_pred HHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 350 ASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 350 a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
|.++-.+...|. +..|-.-..-+-.+|++.+|+++|-... .|+. .|..|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~-- 878 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG-- 878 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh--
Confidence 777777666653 3345455555666777777776664432 3432 34556667777776666655321
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
..-..+...+..-|-..|+++.|.+-|-+... |.+.++.|...+-++.|.++.
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------HHHHHHHhhhhhhHHHHHHHH
Confidence 11123555666677777777777777666543 444555555555555555443
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=7.3e-07 Score=84.80 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=158.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 237 IDGFMRKGDLKKAGELFEQMPEKGVV--SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
+.+......+.+|+.+++.+...++. -|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44556778888899999888877654 47788889999999999999986532 34556778999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
|.++-.+. .|.......|.+-..-+-..|++.+|.+++-.+..|+.. |..|-+.|..+..+++.++- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----C
Confidence 98886654 354556667777777788899999999999888888753 67888999999988887763 3
Q ss_pred CCH--HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHH
Q 010031 395 PDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472 (520)
Q Consensus 395 p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 472 (520)
|+. .|-..+..-+...|++..|...|-+.. -|.+-++.|...+-+++|-++-+.-. -.+..--..++
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHH
Confidence 443 366677777888999999988776654 24556677888888888888765532 12333333444
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 010031 473 CACRTHKDTKIAKIALQS 490 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~ 490 (520)
.+-.--| +.|.+++.+
T Consensus 947 waksigg--daavkllnk 962 (1636)
T KOG3616|consen 947 WAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHhhCc--HHHHHHHHh
Confidence 4433333 456666655
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=9.6e-09 Score=81.70 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=104.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..++++..+ +.|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456677766 45654 4456778889999999999999988522 44677889999999999999999999999765
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 462 --TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 462 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+.++..+..+..++...|++++|+..+++++++.|+++..+...+.+....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999888876543
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=7.2e-09 Score=92.28 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=155.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886555 222221223345556778888888876543 3333333 566666666655554445666
Q ss_pred HHHHHHhcCCC-C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 349 AASLVFGETKE-K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 349 ~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
.+..-+++... + +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666654443 2 2222222234455679999999888653 35667777889999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHh----ccCChHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 424 RFDYFIEPSVKHHTVVVNLLS----RVGQVDKALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+ +..|. +...++.++. -.+++.+|..+|+++..+ +++.+.+.+..+....|++++|.+.++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 23443 3333443332 334799999999998763 67888888999999999999999999999999999
Q ss_pred CcchhHHHHhhhhhccCC
Q 010031 498 IPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~ 515 (520)
+|.++..+..+....|++
T Consensus 234 ~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999998887
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=3.1e-07 Score=90.20 Aligned_cols=128 Identities=8% Similarity=-0.012 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCc-----chHHHHHH
Q 010031 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL-----HIFNVLIR 102 (520)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~li~ 102 (520)
.+.+..+...++..-|.-.|.+-|....+.. ..+......+.+.|++..+++.|..+.-...+... ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 3466677777777778888888888777664 44677788889999999999998877432221110 11222222
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (520)
.|...++...|+.-|+...+..+ -|...|..+..+|...|++..|.++|.+...
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 33444455555555554444211 1333445555555555555555555544444
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=1.8e-06 Score=81.26 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=93.3
Q ss_pred HHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---Ch--hHHHHHHHHHHHc
Q 010031 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DL--LTWTAMIWGLAIH 375 (520)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~l~~~~~~~ 375 (520)
...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++... + +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334445555555555555555443 22334445555555555666666655555443 1 11 1344556666777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HH-H--HHHHHHHccCcHHHHHHH--HHHcHhhc-CCCCChhHHHHHHHHHhccCC
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGT-VF-L--AILTACWYSGQVKLALNF--FDSMRFDY-FIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~-~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 448 (520)
|++++|..++++.......+... .. . .++.-+...|..+.+.+. +....... ..............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 77777777777765422111111 11 1 222223333432222222 11111000 000111111245666777888
Q ss_pred hHHHHHHHhhCCC--CC---CHH----HH--HHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 449 VDKALNFINKMPE--TP---DFV----IW--GALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~---~~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.++|...++.+.. .. ... +- .....++...|+.++|.+.+..++.+-
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888877643 11 111 11 222233668889999998888887643
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=8.5e-06 Score=78.79 Aligned_cols=259 Identities=12% Similarity=0.067 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCC-CcchHHHHHHHHHhC
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAEN 107 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 107 (520)
.+...++.+....|-+++|..+|++..+.. .+=..|...|.+++|.++-+.-.+- =..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 344444445555566677777776665542 2334566677777777777654331 123566666666667
Q ss_pred CChhHHHHHHHHhhhC----------CC---------CCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH
Q 010031 108 SHFQSCISHFVFMLRL----------SV---------RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168 (520)
Q Consensus 108 ~~~~~A~~~~~~m~~~----------~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (520)
++.+.|++.|++.-.. .. ..|...|.--...+-..|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 7777777777664211 00 01111222222222334455555554443322 34
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHH-------
Q 010031 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM------- 241 (520)
Q Consensus 169 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~------- 241 (520)
.+++..|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|.+... +...|+.|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHH
Confidence 45555666677777777666533 455666677778888888888887766542 222222221
Q ss_pred --------hcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHH--------HHHcCC--CCCHHHHHHHH
Q 010031 242 --------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ--------MLDAGV--RANDFTVVSAL 303 (520)
Q Consensus 242 --------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~~~~~--~p~~~~~~~l~ 303 (520)
...+.-.|-+.|++.. .-+...+..|.+.|.+.+|+++--+ ++...+ ..|+...+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1122233333444332 1122334456777777777665211 122222 33555555555
Q ss_pred HHhhccCChHHHHHHHH
Q 010031 304 SACAKVGALEAGVRVHN 320 (520)
Q Consensus 304 ~~~~~~~~~~~a~~~~~ 320 (520)
..++...++++|..++-
T Consensus 1088 dFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 55666666666655543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=5.7e-07 Score=76.29 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
+.+.|+++.|.+-+-.|-... -..|++|...+.-. ...+++....+-+.-+...++ ....+|..++-.||+..-++.
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 344555555555444443211 12244444333211 112233333333333333332 344555555556666666666
Q ss_pred HHHHHhcC
Q 010031 350 ASLVFGET 357 (520)
Q Consensus 350 a~~~~~~~ 357 (520)
|-.++.+-
T Consensus 329 AADvLAEn 336 (459)
T KOG4340|consen 329 AADVLAEN 336 (459)
T ss_pred HHHHHhhC
Confidence 66555543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=3.9e-06 Score=89.61 Aligned_cols=322 Identities=11% Similarity=-0.002 Sum_probs=183.0
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCC------CC--hhHHHHHHHHHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE------YD--AFVRVHLADMYV 175 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 175 (520)
....|++..+...++.+.......+..........+...|+++++...+......--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4445666666666665532111122222233344455677888888887776543110 11 112222334556
Q ss_pred hcCChhHHHHHhccCCCCCCCCC----chhHHHHHHHHHhcCChhHHHHHHhhCCC-------CC--HHHHHHHHHHHHh
Q 010031 176 QLGKTRGAFKVFDETPEKNKSES----VLLWNVLINGCSKIGYLRKAVELFGMMPK-------KN--VASWVSLIDGFMR 242 (520)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~~~ 242 (520)
..|+++.|...+++....-...+ ....+.+...+...|++++|...+++... +. ..+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78888888888776554211111 12334455566778888888888777653 11 1234455666777
Q ss_pred cCCHHHHHHHHhcCCC-------CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHHHhh
Q 010031 243 KGDLKKAGELFEQMPE-------KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRA--NDFTVVSALSACA 307 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~~ 307 (520)
.|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888887766432 11 1123344556667788888888887765431 112 1233334455666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC-hhHH-----HHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHH
Q 010031 308 KVGALEAGVRVHNYISCNDFGLK-GAIG-----TALVDMYAKCGNIEAASLVFGETKEKDL-------LTWTAMIWGLAI 374 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~ 374 (520)
..|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+.. ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888888777644211111 0101 1122344557888888888766554211 113455666777
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 375 HGRYEQAIQYFKKMMYS----GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888876552 222222 2555566677788888888888888764
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=3.6e-05 Score=82.32 Aligned_cols=325 Identities=13% Similarity=0.023 Sum_probs=191.5
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----C----C--H--HHHHHHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----K----N--V--ASWVSLIDGF 240 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----~--~--~~~~~l~~~~ 240 (520)
.....|+++.+...++.+.......+..........+...|+++++...+..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221122233334445555677888888877765532 1 1 1 1122233445
Q ss_pred HhcCCHHHHHHHHhcCCC----CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhh
Q 010031 241 MRKGDLKKAGELFEQMPE----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV---RAN--DFTVVSALSACA 307 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~ 307 (520)
...|++++|...+++... .+ ....+.+...+...|++++|...+.+.....- .+. ..+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888776432 11 12345566667788888888888888764311 111 233444556677
Q ss_pred ccCChHHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHH
Q 010031 308 KVGALEAGVRVHNYISCN----DFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE------K--DLLTWTAMIWGL 372 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~ 372 (520)
..|+++.|...+++.... +... ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888888776442 2111 122334455666777888888887776543 1 123344456667
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----HHHHHHccCcHHHHHHHHHHcHhhcCCCCChh----HHHHHHHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTE-PDGTVFLA-----ILTACWYSGQVKLALNFFDSMRFDYFIEPSVK----HHTVVVNL 442 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~ 442 (520)
...|++++|...+++....... .....+.. .+..+...|+.+.|...+..... .. ..... .+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CC-CccchhHHHHHHHHHHH
Confidence 7888888888888877542111 11111111 11334457888888888777642 11 11111 13456677
Q ss_pred HhccCChHHHHHHHhhCCC-------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 443 LSRVGQVDKALNFINKMPE-------TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+...|++++|...+++... ..+ ..+...+..++.+.|+.++|...+.+++++.....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 7888888888888887653 111 22455555668888888899999999888875543
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=6e-06 Score=77.77 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=72.6
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChh
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVH---LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 216 (520)
...|++++|.+.++...+.. +.+...+.. +.......+..+.+.+.++..... .+........+...+...|+++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHH
Confidence 44556666666666655542 122222221 111111233344444444431111 1112223333444556666666
Q ss_pred HHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Cc--ccHHHHHHHHHhCCChhHHHHHHHH
Q 010031 217 KAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GV--VSWTAMINGFSQNGEAEKALAMFFQ 286 (520)
Q Consensus 217 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (520)
+|...+++..+ .+...+..+...+...|++++|...+++.... +. ..|..+...+...|++++|..++++
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666554 23344555556666666666666666654431 11 1234566667777777777777777
Q ss_pred HHH
Q 010031 287 MLD 289 (520)
Q Consensus 287 m~~ 289 (520)
...
T Consensus 212 ~~~ 214 (355)
T cd05804 212 HIA 214 (355)
T ss_pred Hhc
Confidence 643
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.7e-06 Score=76.27 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=79.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhH
Q 010031 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQS 112 (520)
Q Consensus 36 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 112 (520)
....++|+++.|...|...+.... ++...|..-..+|++.|++++|++=-..-.+ .-...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 456678999999999999988874 4888888889999999999999876654443 344689999999999999999
Q ss_pred HHHHHHHhhhCCCCCCc-ccHHHHHHHH
Q 010031 113 CISHFVFMLRLSVRPNR-LTYPFVSKSV 139 (520)
Q Consensus 113 A~~~~~~m~~~~~~p~~-~~~~~ll~~~ 139 (520)
|+.-|.+-++. .|+. ..+.-+..+.
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999998773 3543 4555555555
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2e-07 Score=86.33 Aligned_cols=241 Identities=12% Similarity=0.029 Sum_probs=147.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 344455555555555544432 2233444444444444444455555555544443 12334444444455555555555
Q ss_pred HHHHhcCCCCCh-hHHHHHH---------HHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010031 351 SLVFGETKEKDL-LTWTAMI---------WGLAIHGRYEQAIQYFKK-MMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 351 ~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
...++.-..... ..|.... ..+..........++|-+ ....+..+|+.....|.-.|--.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 554443321000 0000000 011111123334444444 44455456777777777778889999999999
Q ss_pred HHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 420 FDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
|+.+.. ++| |..+||.|...++...+.++|+..|.++.. +|. ..++..|.-+|...|.+++|...|=.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999885 345 567999999999999999999999999876 677 45788899999999999999999999987654
Q ss_pred C-----Cc-----chhHHHHhhhhhccCCC
Q 010031 497 S-----IP-----QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 497 ~-----~~-----~~~~~l~~~~~~~g~~~ 516 (520)
. .. .+|..|-.++...+..+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 3 22 47888888877777665
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00015 Score=72.13 Aligned_cols=374 Identities=15% Similarity=0.099 Sum_probs=246.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR--PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.|+..-+..++++...+-+.+-+++++++.-.+.. -+...-+.|+-.. -.-+...+.+..+++-..+. | .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa-~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDA-P------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCc-h------h
Confidence 34555666677777777777788887777642211 1111222222222 22344455555555433221 1 2
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 249 (520)
+.......+-+++|..+|+... .+..+.+.|+. .-+.++.|.++-++..+| ..|..+..+-.+.|.+.+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHH
Confidence 3444556667788888887643 23444455553 456778888877777654 5688999999999999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++-|-+.. |+..|..+++...+.|.|++-.+++....+..-.|... ..++-+|++.+++.+.++++. .|
T Consensus 1124 ieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1124 IESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred HHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 99886654 55678999999999999999999998887776566544 468889999998887766652 47
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
+..-...+.+-|...|.++.|.-+|.. +.-|..|...+...|+++.|...-++. -+..||..+-.+|..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 777778888999999999999888754 456888888899999999887765543 245689888889988
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
.+.+.-|. |. ...+-.-..-...++..|-..|-+++.+.+++.... +.....|..|.-.|.+- ++++-.+.
T Consensus 1262 ~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 87765543 21 112222334456788889999999999999887653 33444555555445433 45555555
Q ss_pred HHHHhcC-C-C------CCcchhHHHHhhhhhc
Q 010031 488 LQSSCSL-N-L------SIPQAMSYCQTFMQQK 512 (520)
Q Consensus 488 ~~~~~~~-~-p------~~~~~~~~l~~~~~~~ 512 (520)
++-.|.. + | +....|..+..+|.+-
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555431 1 2 3344455555555543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=8.9e-08 Score=88.54 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=164.1
Q ss_pred hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 010031 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988776 35788899999888899998899999988776 36678888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH--------HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 383 QYFKKMMYSGTEPDGTVFLA--------ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
..++.-+... |....... .-..+.....+....++|-++....+..+|+.++..|.-.|.-.|++++|+.
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999886632 21110000 0012233344566667777766566666888899999999999999999999
Q ss_pred HHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 455 FINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 455 ~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.|+.+.. +| |..+|+-|...+....+.++|+..|.+++++.|.-..+...+|..+...|.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 9998765 55 566899999999999999999999999999999999999999998887775
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=1.7e-05 Score=68.91 Aligned_cols=306 Identities=10% Similarity=0.015 Sum_probs=186.5
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHH---HHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH-HHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI---RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF-VSK 137 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~ 137 (520)
++.-.--+-..+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.=|.+..+ ++||-..-.. -..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3444445566677789999999999888887777776665 477888998899988888887 6677543221 123
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCh--hH------------HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHH
Q 010031 138 SVASLSLLSLGRGLHCLIVKSGVEYDA--FV------------RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203 (520)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (520)
.+.++|.+++|..-|+.++........ .. ....+..+...|+...|+.....+++.. +-+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 567899999999999999876421111 11 1223445567788888999888888764 56777888
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (520)
.-..+|...|++..|+.-++...+ .+..++..+-..+...|+.+.++...++..+-|...-. +|.--....+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHH
Confidence 888889999999988877666554 56677777777778888888888877776654421100 00000001111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLVFGET 357 (520)
Q Consensus 281 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (520)
.+.++.|.+ ....+++..+..-.+...+....... ..+..+-.++...+++.+|++...++
T Consensus 270 ~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 111111111 12333444444444444443322111 22233444555556666666555554
Q ss_pred CC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 358 KE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 358 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.. | |+.++.--..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44 2 344555555566666666666666666665
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=9.1e-07 Score=74.47 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLA 416 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 416 (520)
+-.|...|+++.+....+.+..+. ..+...++.+++...++...+. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777776654443322221 0112256678888888887774 44 555888999999999999999
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHH-hccCC--hHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLL-SRVGQ--VDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
...+++..+.. +.+...+..+..++ .+.|+ .++|.+++++... .| +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988532 34567788888864 67777 5999999999776 34 5678888888899999999999999999
Q ss_pred hcCCCCCcchhHHH
Q 010031 492 CSLNLSIPQAMSYC 505 (520)
Q Consensus 492 ~~~~p~~~~~~~~l 505 (520)
+++.|.+.+....+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99988777665544
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=5.8e-06 Score=81.62 Aligned_cols=386 Identities=14% Similarity=0.047 Sum_probs=188.0
Q ss_pred hhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
...|+..|-+..+. .|+. ..|..|...|....+...|.+.|+...+.+. .+........+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44555555444442 2222 2456666666666666677777776666431 344556666677777777777766633
Q ss_pred cCCCCC-CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccc-
Q 010031 189 ETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS- 263 (520)
Q Consensus 189 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 263 (520)
..-+.. ...-...|....-.|.+.++...|+.-|+...+ .|...|..+..+|..+|++..|.++|.+...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 322221 000111222233335556666677766666665 344566667777777777777777776654433221
Q ss_pred HH--HHHHHHHhCCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHhhccCChHHHHHHHHHH-------HHcCCC
Q 010031 264 WT--AMINGFSQNGEAEKALAMFFQMLDA------GVRANDFTVVSALSACAKVGALEAGVRVHNYI-------SCNDFG 328 (520)
Q Consensus 264 ~~--~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~ 328 (520)
|. -..-..+..|.+.+|...+...... +..--..++..+...+.-.|-..++..+++.- ......
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 11 1222345566777776666655432 11111122222222222222222222222221 111111
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCH---H---HHHHHHHHHHHCCCCCCHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGRY---E---QAIQYFKKMMYSGTEPDGTV 399 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~p~~~~ 399 (520)
.+...|..+. .|..+|-... |+ ......+..-+...+.. + -+.+.+-.-.+ ...+..+
T Consensus 711 ~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~ 777 (1238)
T KOG1127|consen 711 SDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYP 777 (1238)
T ss_pred hhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccch
Confidence 1112221111 1122222222 22 11111111111111211 1 11111111111 1112334
Q ss_pred HHHHHHHHHc-------cC-cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 400 FLAILTACWY-------SG-QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 400 ~~~l~~~~~~-------~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
|..+...|.+ .+ +...|+..+.+..+. ...+..+|+.|.-+ ...|++.-|.-.|-+... +....+|.
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 4444333322 11 234677777766542 13344556555544 555677777666654332 34566788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+...+.+..|++-|...+.++..++|.|...|.-.+.+..+.|+
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 888888888888888888888888888888888877777777775
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=2.6e-06 Score=86.78 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=154.7
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-cccHH
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-G-VVSWT 265 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 265 (520)
|.+...|-..|......++.++|.++.+++.. .-...|.++++....-|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556677777777777777777777777665 12246677777666677777777888777653 2 34677
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKC 344 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 344 (520)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.+ -......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888775 3345567777788888888888888888887765322 2344455666777788
Q ss_pred CCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~ 417 (520)
|+.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++++..++.|-.. .|...+..--..|+-..+.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 8888888888877652 45678888888888888888888888888877777544 5555555444455544333
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.3e-06 Score=83.30 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 313 (520)
..+...+...|-...|..+|+++ ..|..++.+|+..|+..+|..+..+-.+ -+|++..|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 56777888999999999999987 4788899999999999999999988877 3788888888888777777788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|..+..+..+.++++.|.+.|..-..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887765322 1122233334478999999999876653 446888888888999999999999999888
Q ss_pred CCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 391 SGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 391 ~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..||.. .|+++-.+|.+.|+-.+|...+++..+ .. .-+..+|...+....+.|.+++|++.+.++..
T Consensus 548 --L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 --LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred --cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 688776 999999999999999999999999984 44 44556777888888999999999999988654
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=9.6e-07 Score=77.61 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=43.1
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+...|.+.|++++|+..+++... .| ....+..+..++...|++++|..+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455667788888888888877654 12 2457777778888888888888888777666553
No 112
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=4.9e-06 Score=75.32 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc---CCh----H
Q 010031 379 EQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQV----D 450 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 450 (520)
++++.+++++.+. .| |..+|.....++...|+++++++.++++.+.. +.+...|+....++.+. |+. +
T Consensus 125 ~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHH
Confidence 4455555555552 33 33355555555555566666666666665321 23334444444443332 222 3
Q ss_pred HHHHHHhhCCC-CC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 451 KALNFINKMPE-TP-DFVIWGALFCACRTH----KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 451 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
++++...++.. .| |...|+.+...+... +...+|...+.+++..+|+++.++..|+.+|.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 44444433332 22 344566665555552 334456666666666666666666666666654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=1.5e-06 Score=76.44 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-L---LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT----V 399 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~ 399 (520)
....+..++..+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777665544 21 1 24555666666677777777777776653 33221 3
Q ss_pred HHHHHHHHHcc--------CcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHH
Q 010031 400 FLAILTACWYS--------GQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470 (520)
Q Consensus 400 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 470 (520)
+..+..++... |++++|.+.++.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566666666666542 2332 122111111 0000000 001124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCc---chhHHHHhhhhhccCCC
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
+...+.+.|++++|+..++++++..|++| .++..++.++.+.|+.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 55668899999999999999999987765 78999999999999865
No 114
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=4.5e-05 Score=69.18 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=154.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+..+-..+...++.++|+.++.++++. .|+. ..+..--.++...| +++++...++.+.+.+. .+..+|+...-++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 334444566677888888888888875 4443 34444444455556 57888888888887653 3445566554455
Q ss_pred HhcCCH--HHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---Cc-
Q 010031 342 AKCGNI--EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS---GQ- 412 (520)
Q Consensus 342 ~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~- 412 (520)
.+.|+. +++..+++.+.+ .|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555553 567777776665 46778888888888889999999999999986543 444666655555443 22
Q ss_pred ---HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc----CChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcC----
Q 010031 413 ---VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----GQVDKALNFINKMPE-T-PDFVIWGALFCACRTHK---- 479 (520)
Q Consensus 413 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g---- 479 (520)
.++.+++..++.... +-+...|+.+..++... ++..+|.+++.+... . .+......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 346777776666422 44567888888777763 445678888877654 3 45667777777776532
Q ss_pred --------------CHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 480 --------------DTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 480 --------------~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
..++|..+++.+-+.+|=-...|.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 346788888888666665555555433
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=9e-07 Score=70.14 Aligned_cols=118 Identities=10% Similarity=0.013 Sum_probs=93.8
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 384 YFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.++++.. ..|+.. ....+...+...|++++|.+.++.+.... +.+...+..+..++.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556655 455443 56667778888999999999999987532 44667888899999999999999999988654
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+.+...+..+...+...|++++|...+++++++.|+++......
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 44577888888899999999999999999999999988755443
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=5.4e-08 Score=54.90 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=13.7
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=8.3e-08 Score=54.13 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444445555555555555555555444444
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=5.5e-06 Score=84.56 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHc-CCC---CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAM 368 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l 368 (520)
+...|...|......++.++|+++.++++.. ++. --..+|.++++....-|.-+...++|+++.+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455666666666777777777777776542 111 12235566666666666666677777776662 23466777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+...-.--.......+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777764 33445577777777777777777777777776422111123344455566667777
Q ss_pred hHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 449 VDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.+.+..+|+.... +.-...|+.++..-.++|+.+.+..+|++++++
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777776554 234567777777777777777777777777764
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=8.7e-06 Score=81.42 Aligned_cols=138 Identities=11% Similarity=0.065 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...+..|.......|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|...+++.... -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 467788888888899999999999999988 688877 7777888888999999999999988752 13345677788
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
..++.+.|++++|.++|+++.. .|+ ...+..+..++...|+.++|...|+++++...+-...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8889999999999999998774 344 66888888889999999999999999988765554443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=1.5e-05 Score=80.60 Aligned_cols=234 Identities=15% Similarity=0.069 Sum_probs=116.9
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (520)
+...+..|+..+...+++++|..+.+...+ |+. ..|-.+...+...++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 455566666666666677776666665544 332 2222333344444444433322 233333444
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
.++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4444444444444442 2333455566666666666666666666666655 34555666666666655 666666554
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh
Q 010031 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
.+. +..+...+++..+.+++.++... .|+.. +.-..+.+.+....+..--+.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHH
Confidence 432 22344455666666666666552 33322 111222222222222222333
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACR 476 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 476 (520)
++-.+...|-..+++++++.+++.+.. +.|.....-++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 444555556666666666666666554 233444445555543
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.9e-05 Score=63.47 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQV 413 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 413 (520)
...|+..|++++|.+...... +......=+..+.+..+.+-|...+++|.+ +. +..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhh
Confidence 344555666666666655522 222222223444555566666666666654 11 33455555554433 3346
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK-DTKIAKIALQS 490 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 490 (520)
.+|.-+|++|.++ .+|++.+.+-...+....|++++|..+++.... ..++.+...++-+-...| +.+--.+.+.+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 6666666666532 356666666666666666666666666666544 234555555554444444 33444555555
Q ss_pred HhcCCCCCc
Q 010031 491 SCSLNLSIP 499 (520)
Q Consensus 491 ~~~~~p~~~ 499 (520)
+....|+.+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555544
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=4.5e-06 Score=79.74 Aligned_cols=215 Identities=17% Similarity=0.142 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
+|-...-..+...+.+.|-...|+.+|+++ ..|.-+|..|...|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333444445555555666666666666553 2355555566666666666655555544 235555565555555
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHH
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (520)
....-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+.-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 5555555555555443221 11112222223456666666665544443 334555555555555666666666
Q ss_pred HHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 220 ELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 220 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
+.|..... | +...||.+-.+|.+.++-.+|...+.+..+-+ ...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66555554 3 23455666666666666666666655554432 23344445555555666666655555543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.3e-05 Score=70.01 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=145.9
Q ss_pred CChHHHHHHhcccCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHH
Q 010031 77 KSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (520)
Q Consensus 77 ~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 150 (520)
.++.++....+.++. ++...+...+.+......-..+-.++.+-.+ ..-...-|...+. ....|+++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHH
Confidence 456666666666664 3445566666665555444444443333322 1112223444443 346789999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---
Q 010031 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--- 227 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 227 (520)
.++.+++.. +.|+.........+.+.++.++|.+.++.+.... +.....+..+..++.+.|+..+|+.+++....
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 999988854 4567777888899999999999999999998873 33366677788999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
.|+..|..|..+|...|+..++.... ...|...|++++|...+....+.. .++..++
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHhc-cCCcHHH
Confidence 57789999999999999999887653 456888999999999998888763 4444433
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=5.3e-05 Score=63.73 Aligned_cols=169 Identities=10% Similarity=0.077 Sum_probs=106.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KD 361 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 361 (520)
+.+.+.......+......-...|++.|+++.|.+..... -+......-+..+.+..+++-|.+.++.|.+ .+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3444444433334333333444567777777777776541 1333333444556677777788887777777 34
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH
Q 010031 362 LLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (520)
Q Consensus 362 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 437 (520)
..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHH
Confidence 4566666666654 34578888888888765 67888888888888888888888888888887533 34455666
Q ss_pred HHHHHHhccCChHHH-HHHHhhCC
Q 010031 438 VVVNLLSRVGQVDKA-LNFINKMP 460 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A-~~~~~~~~ 460 (520)
.++-+-...|...++ .+.+...+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Confidence 666655566665444 34445444
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.00077 Score=62.73 Aligned_cols=398 Identities=12% Similarity=0.069 Sum_probs=229.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (520)
-|..+|+.||+-+... .++++.+.++++.. +.|+. ..|..-|..-....+++.++.+|.+....- .+...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 4778999999966555 89999999999986 55544 467777888888999999999999887754 356666655
Q ss_pred HHHHH-hcCChhH----HHHHhccCC-CCCCCC-CchhHHHHHHHH---------HhcCChhHHHHHHhhCCC-C--CH-
Q 010031 171 ADMYV-QLGKTRG----AFKVFDETP-EKNKSE-SVLLWNVLINGC---------SKIGYLRKAVELFGMMPK-K--NV- 230 (520)
Q Consensus 171 ~~~~~-~~g~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~--~~- 230 (520)
++--. ..|+... ..+.|+-.. +.|+.+ +...|+..+..+ ..+.+++...++|+++.. | +.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 54322 2344433 233344333 333322 233455544432 233456677777877776 2 22
Q ss_pred HHHHHHHHH-------------HHhcCCHHHHHHHHhcCCC------CCc---------------ccHHHHHHHHHhCCC
Q 010031 231 ASWVSLIDG-------------FMRKGDLKKAGELFEQMPE------KGV---------------VSWTAMINGFSQNGE 276 (520)
Q Consensus 231 ~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~~~~~~~~~ 276 (520)
..|+-.... --+...+..|.++++++.. ... ..|..+|.--..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 223211110 0122334555555555431 010 013333332222111
Q ss_pred h--------hHHHHHHHHHH-HcCCCCCHHHH-HHHHHHhhc----cCC-------hHHHHHHHHHHHHcCCCCChhHHH
Q 010031 277 A--------EKALAMFFQML-DAGVRANDFTV-VSALSACAK----VGA-------LEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 277 ~--------~~a~~~~~~m~-~~~~~p~~~~~-~~l~~~~~~----~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
- ....-.+++.+ -.+..|+..-. ...+..-++ .|+ .+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111222211 11222222111 111111111 111 334444554443322222333333
Q ss_pred HHHHHHHhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010031 336 ALVDMYAKCG---NIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTAC 407 (520)
Q Consensus 336 ~l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 407 (520)
.+.+.-...- ..+...+.++++.. .-..+|..++..-.+..-...|..+|.++.+.+..+ ....+..++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3322211111 24444455554443 233467788888888888999999999999988888 444677777755
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC---C--CHHHHHHHHHHHHHcCCHH
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---P--DFVIWGALFCACRTHKDTK 482 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~ 482 (520)
| .++..-|.++|+.-.+++| -++..-...+.-+...++-..|..+|++...+ | ...+|..++.--..-|+..
T Consensus 413 c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 4 5888999999998776653 33344466777888899999999999987653 2 3468999999888999999
Q ss_pred HHHHHHHHHhcCCCC
Q 010031 483 IAKIALQSSCSLNLS 497 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~ 497 (520)
.+.++-++.....|.
T Consensus 490 si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHHHHHHHhcch
Confidence 999999999988884
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1.2e-06 Score=74.97 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=91.8
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A 484 (520)
..+.+++.+|+..|.++++ . .+-|...|..-..+|.+.|.++.|++-.+.... .|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~-l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE-L-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh-c-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5678999999999999985 2 244677888899999999999999999998775 454 55899999999999999999
Q ss_pred HHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++.|+++++++|++......|..+-.+.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988887776544
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.1e-05 Score=67.81 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=134.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
|..+ ..+-..+...|+-+....+...... .+.......+....+.|++..|...+++.... -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 3444 5566777778888887777776443 34456666888899999999999999999874 24566799999999
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
|.+.|+++.|..-|.+..+-. +-++...+.+.-.|.-.|+++.|..++..... ..|..+-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999988532 34456778888888899999999999988655 23677888888889999999999
Q ss_pred HHHHHHHhcCCCCCc-chhHHHHhhhhhccCCCcc
Q 010031 485 KIALQSSCSLNLSIP-QAMSYCQTFMQQKGDGRTW 518 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~~ 518 (520)
..+...-+ .|+.+ ....++.....+.|.+.-|
T Consensus 222 ~~i~~~e~--~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (257)
T COG5010 222 EDIAVQEL--LSEQAANNVAALRAAASQSGAWTQL 254 (257)
T ss_pred Hhhccccc--cchhHhhHHHHHHHhhcccchhHHH
Confidence 98876633 23222 2233444444444444333
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=4.4e-06 Score=66.44 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
++..+..+...+...|++++|...|+.+.. ..|+ ...+..+..++...|++++|...|++..+. -+.+...+..+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~l 98 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQT 98 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 333345566777788888888888888877 4554 447777888888888888888888888742 24456677888
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHH
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFC 473 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~ 473 (520)
..++.+.|++++|+..+++... .|+ +..|.....
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888888654 344 444444333
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=5.3e-05 Score=63.78 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~ 369 (520)
.|+......+-..+...|+-+....+....... ...+......++....+.|++..|...+++... +|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 443333355566677777777777776665422 245666677788999999999999999998776 5778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
-+|.+.|+.+.|..-|.+..+ +.|+. ..++.+...+.-.|+.+.|..++..... . -.-+..+-..+..+....|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-~-~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-S-PAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHhhcCC
Confidence 999999999999999999998 56654 4888888889999999999999999874 2 13366677888889999999
Q ss_pred hHHHHHHHhhCCC
Q 010031 449 VDKALNFINKMPE 461 (520)
Q Consensus 449 ~~~A~~~~~~~~~ 461 (520)
+++|.++...-..
T Consensus 218 ~~~A~~i~~~e~~ 230 (257)
T COG5010 218 FREAEDIAVQELL 230 (257)
T ss_pred hHHHHhhcccccc
Confidence 9999999876554
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=6.4e-06 Score=69.36 Aligned_cols=134 Identities=8% Similarity=0.033 Sum_probs=105.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 4568889998887555433322 21 01223677788888888877532 5677899999999999999
Q ss_pred hHHHHHHHhhCCC--CCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 449 VDKALNFINKMPE--TPDFVIWGALFCA-CRTHKD--TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++|...+++... +.+...+..+..+ +...|+ .++|.++++++++.+|+++.++..+|..+.+.|+-+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence 9999999999765 3467788888887 467787 599999999999999999999999999999999854
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=0.00012 Score=74.27 Aligned_cols=281 Identities=9% Similarity=0.023 Sum_probs=180.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 242 (520)
+...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++.+.+.-+ . ++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N-----------LIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-----------hhhhccc
Confidence 45688899999999999999999999766652 33444555555567777776665544 2 2222233
Q ss_pred cCCHHHHHHHHhcCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 243 KGDLKKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
..++.....+...+..- +-.++..++.+|-+.|+.++|..+|+++++.. +-|+...+.+...|... ++++|.+++.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 33333333333333321 23467788999999999999999999999986 56778889999889888 9999999988
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTV 399 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~ 399 (520)
++... |...+++..+.++|.++..-++. +.+.-..+.+.+... |..--..+
T Consensus 174 KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHH
Confidence 77653 66677888899988887764433 233333344444332 22223345
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH- 478 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~- 478 (520)
+..+-..|...++++++..+++.+.+ . -+-|.....-++.+|. +.+.. ...|++.. -+. .....
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~-~-~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l---------~~s-~l~~~~ 290 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILE-H-DNKNNKAREELIRFYK--EKYKD-HSLLEDYL---------KMS-DIGNNR 290 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh-c-CCcchhhHHHHHHHHH--HHccC-cchHHHHH---------HHh-ccccCC
Confidence 66666778888999999999999985 2 1334455556666664 21111 11111111 111 11222
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchh
Q 010031 479 KDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
..+..|+.-|++.+..+|.+-..+
T Consensus 291 ~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 291 KPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred ccHHHHHHHHHHHeeecCCCEEEE
Confidence 456778888888888888765444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.6e-05 Score=62.72 Aligned_cols=193 Identities=14% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 274 NGEAEKALAMFFQMLD---AG-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
..+.++..+++.+++. +| ..++..+ |..++-+....|+.+.|...++.+.+.- +.+..+...-.-.+...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~---- 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEAT---- 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHh----
Confidence 3456677777666653 23 3444433 3344455556666666666666655432 22222222222223334
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
|++++|+++|+.+.+.. +-|.+++..-+...-..|+--+|++-+....+.
T Consensus 100 ---------------------------~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-- 149 (289)
T KOG3060|consen 100 ---------------------------GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-- 149 (289)
T ss_pred ---------------------------hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--
Confidence 44555555555554432 112234433333333344444444444444432
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCcch
Q 010031 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK---DTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+..|...|..+.+.|...|++++|.-.++++.- .| ++..+..+...+.-.| +.+-|.++|+++++++|.+...
T Consensus 150 F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 150 FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 244455555555555555555555555555322 22 2333333333322211 3444555555555555544433
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=1.4e-05 Score=79.88 Aligned_cols=121 Identities=6% Similarity=-0.066 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHH
Q 010031 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWG 469 (520)
Q Consensus 393 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~ 469 (520)
...+...+..|.....+.|.+++|..+++...+ +.|+. .....++.++.+.+++++|...+++... .|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 445677899999999999999999999999985 36664 5677889999999999999999999776 455 55677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+..++.+.|++++|..+|++++..+|+++.++..+|..+...|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 77788999999999999999999999999999999999999999865
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0022 Score=59.92 Aligned_cols=386 Identities=12% Similarity=0.105 Sum_probs=229.8
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 136 (520)
+-|..+|..|+.-+..+ .++++++.++++.. .....|..-|..-.+..+++....+|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 56889999999877666 99999999999875 355789999999999999999999999987643 3444555444
Q ss_pred HHHh-ccCChhhH----HHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhcCChhHHHHHhccCCCCCCCCCch
Q 010031 137 KSVA-SLSLLSLG----RGLHCLI-VKSGVEYDA-FVRVHLADM---------YVQLGKTRGAFKVFDETPEKNKSESVL 200 (520)
Q Consensus 137 ~~~~-~~~~~~~a----~~~~~~~-~~~~~~~~~-~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 200 (520)
.--. ..++.... .+.|+-. .+.|+++-. ..|+..+.. |....+++..+++++++....+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 4322 22333332 2333333 333543322 245544443 344556778888998888643221122
Q ss_pred hHHHH------HHHH-------HhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc-------CCHHH--HHHHHhcC--
Q 010031 201 LWNVL------INGC-------SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK-------GDLKK--AGELFEQM-- 256 (520)
Q Consensus 201 ~~~~l------~~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~--a~~~~~~~-- 256 (520)
.|+.. |+.. -+...+..|.++++++. .+.+++.+. |-.++ ..+++...
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 23221 1111 11223445555554443 122222111 11111 11111110
Q ss_pred -CC------CC--------cccHHHHHH--------------HHHhCCC--------------hhHHHHHHHHHHHcCCC
Q 010031 257 -PE------KG--------VVSWTAMIN--------------GFSQNGE--------------AEKALAMFFQMLDAGVR 293 (520)
Q Consensus 257 -~~------~~--------~~~~~~l~~--------------~~~~~~~--------------~~~a~~~~~~m~~~~~~ 293 (520)
.+ .+ ..+|..-+. .+...++ -+++..+++...+.-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00 01 112222221 1222222 34445555554433222
Q ss_pred CCHHHHHHHHHHh---hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHH
Q 010031 294 ANDFTVVSALSAC---AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTW 365 (520)
Q Consensus 294 p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 365 (520)
-+..+|..+...- ......+....+++++.......-.-+|..+++.-.+...+..|+.+|.++.+ .++...
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 2333333332211 11123556666777766544333345677788888999999999999998876 266788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNL 442 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 442 (520)
++++.-+| .++..-|.++|+--.+. -+|.. -....+.-+...++-..+..+|++.... +++|+ ..+|..++.-
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHH
Confidence 88888776 57889999999986663 34444 4456677778899999999999999864 56665 4799999999
Q ss_pred HhccCChHHHHHHHhhCC
Q 010031 443 LSRVGQVDKALNFINKMP 460 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (520)
-..-|++..+.++-+++.
T Consensus 482 ES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 999999999999987754
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=4.4e-05 Score=69.96 Aligned_cols=143 Identities=16% Similarity=0.154 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNL 442 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 442 (520)
+......+...|++++|+..++.++.. .|+.. .+......+...++..+|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333344455667788888888887774 55555 4444455677788888888888887742 454 4455667778
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
|.+.|++++|+..+++... +.|+..|..|..+|...|+..+|.....+...+..+--.+...+-.+-.+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888888888888877543 345677888888888888888888777777776665555555554444443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=4.9e-05 Score=60.74 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh--hHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV--KHHT 437 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 437 (520)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.... ..|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 344455555 478888888889988885 3333 244445567888999999999999988532 22221 2445
Q ss_pred HHHHHHhccCChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPET-PDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
.+..++...|++++|+..++....+ ..+..+......+.+.|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6788888999999999999886542 344566677788999999999999998874
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=3.2e-06 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+...+...|++++|.++|+-+.. +-+..-|..|..++...|++++|+..|.++..++|++|.++.++|.++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 334444455555555555554332 22344455555555555555555555555555555555555555555555555
No 138
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.31 E-value=0.0014 Score=59.71 Aligned_cols=415 Identities=12% Similarity=0.072 Sum_probs=203.5
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC------hHHHHHHHHHHhcCCChHHHHHHhcccCCC-CcchHHHHHHH--HHhC
Q 010031 37 LIHSSNSTKQLRQIHAQIILHNLFAS------SRITTQLISSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRG--LAEN 107 (520)
Q Consensus 37 ~l~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~ 107 (520)
+|...+++.++..++.++.+.- ..+ ...-+.++++|-. ++++.....+....+. ....|-.+..+ +.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 4666778899988888887653 112 2233466666653 4455554444444331 13345555443 4567
Q ss_pred CChhHHHHHHHHhhhC--CCCCC------------cccHHHHHHHHhccCChhhHHHHHHHHHHhCC----CCChhHHHH
Q 010031 108 SHFQSCISHFVFMLRL--SVRPN------------RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV----EYDAFVRVH 169 (520)
Q Consensus 108 ~~~~~A~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 169 (520)
+.+++|++.+..-... +..|. -.-=+..+..+...|++.+++.+++++...=+ .-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888888888776654 22221 11113445566788888888888888776533 367778887
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC---------hhHHHHHHhhCCC-------------
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY---------LRKAVELFGMMPK------------- 227 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~------------- 227 (520)
++-.+.+.=-.+. -+.+ ...+-| -|.-++-.|.+.=. +.-...++..+.+
T Consensus 173 ~vlmlsrSYfLEl----~e~~-s~dl~p---dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 173 AVLMLSRSYFLEL----KESM-SSDLYP---DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHhHHHHHHH----HHhc-ccccCh---HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 6665544211111 0111 111111 12223333322110 0001111111110
Q ss_pred -------------CCHH-HHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CcccHHHHHHHHHhCCChhHHHHHHH
Q 010031 228 -------------KNVA-SWVSLIDGFMRKGDLKKAGELFEQMPEK--------GVVSWTAMINGFSQNGEAEKALAMFF 285 (520)
Q Consensus 228 -------------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (520)
|+.. ....+...... +.+++..+.+.+... =+.++..++....+.++..+|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2211 11222222222 444444443333221 13467777777777777777777776
Q ss_pred HHHHcCCCCCHHHHHH-------HHHHhh-ccC---ChHHHHHHHHHHHHcCCCCChhHHHHHHH---HHHhcCC-HHHH
Q 010031 286 QMLDAGVRANDFTVVS-------ALSACA-KVG---ALEAGVRVHNYISCNDFGLKGAIGTALVD---MYAKCGN-IEAA 350 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a 350 (520)
-+... .|+...-.. +-+..+ ... +...-..+|+.+...++. .......|+. -+-+.|. -++|
T Consensus 323 lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 323 LLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHH
Confidence 65542 333221111 111111 111 122223344444433322 1112222222 2333343 6677
Q ss_pred HHHHhcCCC---CChhHHHHH----HHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHccCcHH
Q 010031 351 SLVFGETKE---KDLLTWTAM----IWGLAI---HGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTA--CWYSGQVK 414 (520)
Q Consensus 351 ~~~~~~~~~---~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~~g~~~ 414 (520)
.++++.+.+ -|...-|.. =.+|.+ ......-..+-+-+.+.|+.|-.+ .-+.|..+ +...|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 777776655 233322221 122221 122333334444445566666332 44444443 45678888
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 471 (520)
++.-.-.-+.+ +.|++.+|..++-++....++++|..++..++ |+..++++-
T Consensus 480 kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 480 KCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 87766666553 57788888888888888888888888888775 455555543
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=1.6e-05 Score=61.31 Aligned_cols=106 Identities=14% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALF 472 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 472 (520)
++..+...+...|++++|.+.+..+....+-.+ ....+..+..++.+.|++++|...++.+.. .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667778888888888888875331111 134556688888888888888888887654 233 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++...|+.++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888999999999999999999988766543
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=1.2e-05 Score=74.76 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=74.5
Q ss_pred HHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHH
Q 010031 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTK 482 (520)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 482 (520)
..+...|+++.|++.|+++.+.. +.+...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34556677777777777776421 33455666777777777888888877777654 234566777777777888888
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+|+..++++++++|+++.....++.+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888777777765443
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=9.2e-05 Score=61.87 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI-LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.|..++-+....|+.+.|...++.+... + |.+.-...+ ..-+...|++++|+++++.+.++. +.|..++-.-+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 3455566667789999999999999886 3 655422222 223456899999999999998643 5566777777777
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.-..|+.-+|++-+.+... ..|...|.-+...|...|++++|.-.+++++=..|.+|-.+-.++.++.-.|-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7788888888887776554 46899999999999999999999999999999999999999999998876664
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=6.5e-05 Score=72.93 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=100.6
Q ss_pred CChhHHHHHHHHHHH--c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CcHHHHHHHHHHcHh
Q 010031 360 KDLLTWTAMIWGLAI--H---GRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYS--------GQVKLALNFFDSMRF 425 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 425 (520)
.+...|...+++... . ++...|..+|++.++ ..|+.. .+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666665432 2 236789999999998 678765 454444433221 233445555555432
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
....+.+...|..+.......|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|.+|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 112344557788887777788999999999999776 6888889999999999999999999999999999998863
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=5.6e-05 Score=69.97 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQV 413 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 413 (520)
..|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .| +...+..-...|.+.+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 344555555666666666666666655555555666666666666777777666653 23 334555555556667777
Q ss_pred HHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 414 KLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+.|+++.+++.. ..|+ ..+|..|+.+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777664 2343 4567777777777777777777766655
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.0096 Score=59.24 Aligned_cols=457 Identities=11% Similarity=0.061 Sum_probs=225.6
Q ss_pred ccCchHHHHHHHHHHHhCCCCChHHHHHHHHH--HhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHH
Q 010031 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCIS 115 (520)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 115 (520)
++.+..|.+....+.+.. |+. .|...+.+ ..+.|+.++|..+++.... .|..+...+-..|...++.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 345666766666666553 332 22333333 3478888888888876542 355677777788888888999999
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHH
Q 010031 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK----------TRGAFK 185 (520)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~ 185 (520)
+|++..+ ..|+......+..++.+.+++.+-.++--++-+. ++..++.+=++++.+...-. ..-|.+
T Consensus 99 ~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9988876 4477666677777888887776655555444442 33344444344444433211 123455
Q ss_pred HhccCCCCC-CCCCchhHHHHHHHHHhcCChhHHHHHHhh-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 186 VFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGM-MP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (520)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (520)
.++.+.+.+ ..-+..-...-...+-..|++++|..++.. .. ..+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555443 111111112222334456778888777722 21 133334445566667777777766666655543
Q ss_pred CcccHHHHHHHHHh----------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 260 GVVSWTAMINGFSQ----------------NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 260 ~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
+..-|...++.+.+ .+..+...+..++......+-......-+..-+...|+.+++...|-+-
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k- 334 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK- 334 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH-
Confidence 32223333322111 1112222222222222111100011111111122345555543333211
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhH--------HHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLT--------WTAMIWGLAIHG-----RYEQAIQYFKKMM 389 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~~~~~-----~~~~a~~~~~~~~ 389 (520)
.|.. ..|..=+..|...=..+.-..++...... +..+ +...+..-...| .-+.-..++++..
T Consensus 335 -fg~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~ 410 (932)
T KOG2053|consen 335 -FGDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLK 410 (932)
T ss_pred -hCCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 1111 11111122222222223333333322221 0000 111111111122 1222333333321
Q ss_pred ---HCC------CCCCHH---------HHHHHHHHHHccCcHH---HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 390 ---YSG------TEPDGT---------VFLAILTACWYSGQVK---LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 390 ---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++| +-|+.. +.+.|+..+.+.++.. +|+.+++...... +.|..+-..+++.|.-.|-
T Consensus 411 ~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa 488 (932)
T KOG2053|consen 411 LTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGA 488 (932)
T ss_pred HHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcC
Confidence 122 233322 4456777788877654 5666666655322 3344555678889998899
Q ss_pred hHHHHHHHhhCCCC-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhcCCC-CCcchhHHHHhhhh
Q 010031 449 VDKALNFINKMPET-PDFVIWGALF-CACRTHKDTKIAKIALQSSCSLNL-SIPQAMSYCQTFMQ 510 (520)
Q Consensus 449 ~~~A~~~~~~~~~~-~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 510 (520)
+..|.++++.+..+ -...|...++ .-+...|++.-+...+...+...- +......+.+.+|+
T Consensus 489 ~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 489 FPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR 553 (932)
T ss_pred ChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999987653 2233444444 345667888888888888877543 33344444444443
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.6e-06 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.17 E-value=3.3e-06 Score=56.76 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+...+.+.|++++|++.|+++.. .| +...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778899999999999999766 45 466888899999999999999999999999999986
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=5.7e-06 Score=47.46 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3788999999999999999999999999888887
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.2e-06 Score=47.26 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 127 (520)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.3e-06 Score=46.90 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 294 (520)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00011 Score=58.65 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHhcCCCC--Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHH
Q 010031 344 CGNIEAASLVFGETKEK--DL----LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKL 415 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~ 415 (520)
.++...+...++.+.+. +. ...-.+...+...|++++|...|+.+......|+.. ....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55556555555555542 11 223345677888999999999999999875333322 45567778889999999
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
|+..++... .. ......+....++|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP-DE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc-Cc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999997754 22 334456778899999999999999999864
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=0.0001 Score=60.90 Aligned_cols=130 Identities=9% Similarity=0.103 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566666677777777777777777766432222 2366666667777777777777777766421 2234455556
Q ss_pred HHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
..+|...|+...+..-++... ..+++|.+.++++++.+|++ +...+..+...|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666555443332211 12678899999999999887 4444444444443
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00016 Score=64.76 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998642 2244455555544 334677778999999998754 667778888999
Q ss_pred HHhccCChHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 442 LLSRVGQVDKALNFINKMPET-PD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.+.+.|+.+.|..+|++.... |. ...|...+.--.+.|+.+....+.+++.+..|++.......-.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999997762 33 34899999999999999999999999999999977766655444
No 153
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00011 Score=57.97 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...++...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444455555555555444421 1122344444444445555555555555444
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00019 Score=66.59 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 313 (520)
..|+..+...++++.|..+|+++.+.++.....+++.+...++..+|.+++++.+... +-+...+..-...+.+.++.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4455556666777788888888777776666677777777777778888888777542 334555555556677777888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888777654 23455777777788888888877777776653
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=4.3e-05 Score=55.96 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK 479 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 479 (520)
.+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34445555666666666666655321 22234555566666666666666666665433 223345666666677777
Q ss_pred CHHHHHHHHHHHhcCCC
Q 010031 480 DTKIAKIALQSSCSLNL 496 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p 496 (520)
++++|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777776665
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.022 Score=56.86 Aligned_cols=393 Identities=16% Similarity=0.150 Sum_probs=225.8
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH--hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
.....+++.+|+....++.+.- |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3456778999999998887732 554 355566655 5889999999888877765543 778888999999999999
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChh----HHHHHHhhCCCCCHHHHHHHHHHHHhcC-C---------H
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLIDGFMRKG-D---------L 246 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~ 246 (520)
++|..++++.... -|+......+..+|++.+++. .|++++....+. ...+-++++.+...- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998876 566777778888888887765 466666655443 333334444443321 1 2
Q ss_pred HHHHHHHhcCCCCC-cc-c---HHHHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 247 KKAGELFEQMPEKG-VV-S---WTAMINGFSQNGEAEKALAMFF-QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 247 ~~a~~~~~~~~~~~-~~-~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
.-|.+.++.+.+.+ .. + .......+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555554433 11 1 1122334456788899988884 33333233344455566777788888888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHH----------------hcCCHHHHHHHHhcCCCC-ChhHHHHHHHHH---HHcCCHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYA----------------KCGNIEAASLVFGETKEK-DLLTWTAMIWGL---AIHGRYEQ 380 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~ 380 (520)
++...+.. | |...++.+. ..+..+...+..++.... .-.+|-+-+.+. ..-|+.++
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHH
Confidence 88877632 2 333222211 112222222222222221 111222222222 23466666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh-------HHHHHHHHHhccCC-----
Q 010031 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK-------HHTVVVNLLSRVGQ----- 448 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~----- 448 (520)
+...|-+- -|-.| .+..=+..|...=..+.-..++...... .++.. -+...+....-.|.
T Consensus 327 ~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 327 MLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 65544332 22233 2222233333333445555566555421 22221 12222322233332
Q ss_pred hHHHHHHHhhCC-------C-----CCCH---------HHHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCCcchhHH
Q 010031 449 VDKALNFINKMP-------E-----TPDF---------VIWGALFCACRTHKDT---KIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 449 ~~~A~~~~~~~~-------~-----~~~~---------~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.+.-..++.+.. + -|.. -+.+.++..+.+.++. -+|+-+++..+...|.|+..-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 222233332211 1 0111 2346677888887765 57889999999999999999999
Q ss_pred HHhhhhhccC
Q 010031 505 CQTFMQQKGD 514 (520)
Q Consensus 505 l~~~~~~~g~ 514 (520)
+..+|.-.|-
T Consensus 479 LiriY~~lGa 488 (932)
T KOG2053|consen 479 LIRIYSYLGA 488 (932)
T ss_pred HHHHHHHhcC
Confidence 9999998875
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=2e-05 Score=56.11 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD-FVIWGALFCACRTHKDTKIAKIALQ 489 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (520)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|+.++++....|. ......+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555543221111222333345555555555555555554111121 2222333444555555555555554
Q ss_pred H
Q 010031 490 S 490 (520)
Q Consensus 490 ~ 490 (520)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.94 E-value=9.3e-06 Score=55.18 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=35.0
Q ss_pred ccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 445 RVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.|++++|++.|+++.. .| +...+..+..+|.+.|++++|..++++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45566666666665543 22 4555555666666666666666666666666666555544443
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.91 E-value=1.6e-05 Score=54.17 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCC
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK-DTKIAKIALQSSCSLNL 496 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 496 (520)
++..|..+...+...|++++|+..|++... .| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677777888888888888888877654 34 4567777777888888 68888888888888877
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.88 E-value=0.02 Score=52.45 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|..++.+..+..-.+.|..+|-+..+.| +.++...++.++.-+ ..|+...|..+|+.-...+ +.+...-+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 457777777778888999999999999988 566777888888755 4688899999999876543 233333355667
Q ss_pred HHhccCChHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 442 LLSRVGQVDKALNFINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
.+.+.++-+.|..+|+....+ .-...|..++.--..-|+...+..+-+++.++.|.....-..+.+.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 778899999999999965542 22568899998888999999999999999999887654444444433
No 161
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=2.5e-05 Score=47.38 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
.+|..+..+|...|++++|++.++++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999998875
No 162
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.00019 Score=66.81 Aligned_cols=120 Identities=8% Similarity=0.013 Sum_probs=92.8
Q ss_pred CCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCccc
Q 010031 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTP-K-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131 (520)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 131 (520)
+.+.+......+++.+....+++.+..++-+.+. | -..+.+++++.|...|..+.+++++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455666677777777777888888888776653 1 234567888888888888999988888888888899999
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 132 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
++.|++.+.+.|++..|.++...|...+.-.++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998888888888777666777776666666555
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=4.8e-05 Score=52.49 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
...|.+.+++++|.++++++.. +.++..|......+...|++++|...++++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3568889999999999999776 3456678888888999999999999999999999998887765543
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0011 Score=59.70 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=62.3
Q ss_pred HccCcHHHHHHHHHHcHhh--cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHH
Q 010031 408 WYSGQVKLALNFFDSMRFD--YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA--CRTHKDTKI 483 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~ 483 (520)
.+.|++..|.+.|.+.... ....|+...|.....+..+.|+..+|+.-.+....-.+..++..+..+ +...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665531 122344556666667777778888888777776642223333333333 555777888
Q ss_pred HHHHHHHHhcCCCC--CcchhHHHHhhhhhccCCC
Q 010031 484 AKIALQSSCSLNLS--IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 484 A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 516 (520)
|.+.++++.+...+ ....+......+.+..+.+
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence 88888887765443 4444444444444443433
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=6e-05 Score=53.65 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+.. +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999998533 12445666688899999999999999988 3211 223455556789999999999999
Q ss_pred HHHhh
Q 010031 454 NFINK 458 (520)
Q Consensus 454 ~~~~~ 458 (520)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0013 Score=59.22 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m 287 (520)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 345555556666665555554
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=4e-05 Score=42.40 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 292 (520)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 168
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.04 Score=53.44 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC-CCcchHHHHHHHH----------HhCCChhHHHHHHHHhhhCCCCCC
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGL----------AENSHFQSCISHFVFMLRLSVRPN 128 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~----------~~~~~~~~A~~~~~~m~~~~~~p~ 128 (520)
.|.+..|..+...-...-.++-|...|-+... +....-..|-..+ .--|.+++|.++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 56667776666665566666666666654432 2221111111111 113567777777766655332
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHH
Q 010031 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204 (520)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (520)
.+....+.|+|-.+.++++.- |-..| ...++.+...+.....+++|.+.+..-... ..
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 344455666665554444321 11111 235666666666666777777766543321 23
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 010031 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (520)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (520)
.+.++.+..++++-..+.+.+.+ +....-.+..++.+.|.-++|.+.|-+...|. +.+..|...++|.+|.++-
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555554443 33344555666666666666666655443332 2344555666666666654
Q ss_pred HH
Q 010031 285 FQ 286 (520)
Q Consensus 285 ~~ 286 (520)
+.
T Consensus 902 q~ 903 (1189)
T KOG2041|consen 902 QR 903 (1189)
T ss_pred Hh
Confidence 44
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00044 Score=56.94 Aligned_cols=100 Identities=13% Similarity=0.003 Sum_probs=47.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACR 476 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 476 (520)
+..+...+...|++++|...+++.....+-++ ...++..+..+|...|++++|++.+++... .| ...++..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33344444444555555555555442111011 112444555555555555555555555432 11 2233333333333
Q ss_pred -------HcCCHH-------HHHHHHHHHhcCCCCCc
Q 010031 477 -------THKDTK-------IAKIALQSSCSLNLSIP 499 (520)
Q Consensus 477 -------~~g~~~-------~A~~~~~~~~~~~p~~~ 499 (520)
..|+++ +|..+++++++.+|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 555555 66777777788888644
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.74 E-value=0.00083 Score=52.73 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+......+..-+...|++++|..+|+-+.. +.|... -|..|..+|-..|++.+|+..|..... .. +-++..+-.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHH
Confidence 334444455555666666666666666665 455444 445555555566666666666666653 21 2334555566
Q ss_pred HHHHhccCChHHHHHHHhhCC
Q 010031 440 VNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..++...|+.+.|++.|+...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666543
No 171
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.0008 Score=51.66 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 438 (520)
++..++..+...|++++|...|+.+... .|+ ...+..+..++...|+++.|...++.+....+-.+ ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555666677778888888888777763 233 23555567777778888888888887764322111 1345666
Q ss_pred HHHHHhccCChHHHHHHHhhCCC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+..++.+.|+.++|.+.++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 77777778888888888877654
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.73 E-value=0.012 Score=52.82 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH--
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL-- 453 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-- 453 (520)
+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+ . .|-+.++ ....+.+.|+.....
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~--ePHP~ia--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-A--EPHPDIA--LLYVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-c--CCChHHH--HHHHHhcCCCcHHHHHH
Confidence 34444444444444 455544 233334455666666666666666653 2 3333332 222233444422110
Q ss_pred --HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 454 --NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 454 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+-++.|+ +.+..+...+..+....|++..|..-.+.+....|.. +.+..++.+-.
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIee 373 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEE 373 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHh
Confidence 1112222 2334455555555556666666666666665555542 33444444443
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00048 Score=59.40 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 450 (520)
.+.++|++|+..|.+.++ +.| |.+.|..-..+|.+.|.++.|++-.+.... +.|. ...|..|..+|...|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 344455555555555554 333 222334444445555555555544444432 2232 234445555555555555
Q ss_pred HHHHHHhhCCC-CCCHHHH
Q 010031 451 KALNFINKMPE-TPDFVIW 468 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~~~~ 468 (520)
+|++.|++..+ .|+..+|
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 55555544443 3443333
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=5e-05 Score=41.97 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLRLS 124 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 124 (520)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00049 Score=49.97 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------ChhhHHHHHHHHHHhCCCCChhH
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLS--------LLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +......+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777778999999999999999998 899999999998876543 23455667777777777777777
Q ss_pred HHHHHHHHHh
Q 010031 167 RVHLADMYVQ 176 (520)
Q Consensus 167 ~~~l~~~~~~ 176 (520)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.04 Score=50.14 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (520)
.+..+.-+...|+...|.++-.+..-++-..|-..+.+++..++|++..++-.. +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556667777777777777666666777777777777777665554321 12336677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010031 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356 (520)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (520)
.+|..+...+ .+..-+..|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666541 113455667777777777665443
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00019 Score=52.41 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..++..+...|++++|...++++.. +.+...+..+...+...|++++|.+.++++++..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 355677888899999999999998754 334567788888899999999999999999999999999999999999988
Q ss_pred cCCC
Q 010031 513 GDGR 516 (520)
Q Consensus 513 g~~~ 516 (520)
|+.+
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 8754
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.00028 Score=58.34 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.+..+..++.+.|++++|...++++++..|+++..+..++.++...|
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 34444444445555555555555555555555555444454444444
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.001 Score=48.38 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccC--------ChHHHHHHHHHHHHcCCCCChhH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVG--------ALEAGVRVHNYISCNDFGLKGAI 333 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 333 (520)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++.....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999887653 35567888999999999999999
Q ss_pred HHHHHHHHHh
Q 010031 334 GTALVDMYAK 343 (520)
Q Consensus 334 ~~~l~~~~~~ 343 (520)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.00099 Score=58.59 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALF 472 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 472 (520)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+.. -|+ +..+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555444567889999999998886542111 024666788899999999999999988764 232 44555666
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
..+...|+.++|...|+++++..|++..+-.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7788899999999999999999998775543
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00057 Score=63.74 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhC--CCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
......++..+....+.+.+.+++.+.+.. ....-..|.+.+++.|...|..+.+..++..=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555566666666666543 122223344566666666776677766666666666666777777777
Q ss_pred HHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhc
Q 010031 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212 (520)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (520)
+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777666666665555455555555545444443
No 182
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.59 E-value=0.077 Score=50.87 Aligned_cols=402 Identities=11% Similarity=0.046 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
+-..|..+|.---...+.+.+..++..+.. -.|...-| ......=.+.|..+.+.++|++-+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 445677777765555666777777777765 23555433 2233333577889999999998887 5667777777776
Q ss_pred HHHH-hcCChhHHHHHhccCCCC-CC-CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh---c--
Q 010031 172 DMYV-QLGKTRGAFKVFDETPEK-NK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR---K-- 243 (520)
Q Consensus 172 ~~~~-~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~-- 243 (520)
..+. ..|+.+.....|+..+.. |. -.+...|...|..-..++++.....+|++..+.....++..-.-|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 6554 457777778888776542 21 12456778888888888899999999999888444444433333221 1
Q ss_pred ----CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHH-------HhhccC
Q 010031 244 ----GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV--SALS-------ACAKVG 310 (520)
Q Consensus 244 ----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~-------~~~~~~ 310 (520)
...+++.++-......... ...++..+ .+=..+...+-+.+..+.. .+-. .+....
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~---------~~~~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKI---------THSQEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhc---------ccccChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 1223322222211110000 00011111 1101111111111111110 1111 111111
Q ss_pred ChHHHHHHHHHHHHc---C----CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCCHHH
Q 010031 311 ALEAGVRVHNYISCN---D----FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 380 (520)
........++.-.+. . ..++..+|...+..-...|+.+.+.-+|+...-|-. ..|--.+.-....|+.+-
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 122222222222211 0 123445677777777888999999888888776532 355555555556688888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHH---H
Q 010031 381 AIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKAL---N 454 (520)
Q Consensus 381 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~ 454 (520)
|..++....+--++ |....+.+. -+-..|+++.|..+++.+..+ . |+. ..-..-+....+.|..+.+. +
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88887776653222 222222222 234578999999999999754 3 553 23334455666788888887 5
Q ss_pred HHhhCCC-CCCHHH----HHHHHHH-HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 455 FINKMPE-TPDFVI----WGALFCA-CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 455 ~~~~~~~-~~~~~~----~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++..... +.+..+ +....+. +.-.++.+.|..++.++.+..|++...+..+..+....+
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5554433 222222 2222222 445889999999999999999999988888777766554
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.057 Score=49.15 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 414 (520)
+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++.-|..++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34445555667777777777776667777777777777777777765554322 112355666667777777777
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+|..++.++. +..-+..|.++|++.+|.+.--+..
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7776665532 1335566677777777766655543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0018 Score=58.38 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhc
Q 010031 377 RYEQAIQYFKKMMY----SGTEPDGT--VFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSR 445 (520)
Q Consensus 377 ~~~~a~~~~~~~~~----~~~~p~~~--~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 445 (520)
++++|...+++..+ .| .|+.. .+..+...|... |++++|++.|++...-+..... ..++..++..+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666666665543 22 22222 556666677777 8999999999888653221112 2456678888999
Q ss_pred cCChHHHHHHHhhCCC----CC----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 446 VGQVDKALNFINKMPE----TP----DFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~----~~----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.|++++|+++|+++.. .+ +.. .+...+-++...||...|.+.+++..+.+|.-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999987542 11 111 23333445677899999999999999888843
No 185
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.54 E-value=0.015 Score=53.34 Aligned_cols=167 Identities=16% Similarity=0.087 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
.++-.|....+++...++.+.+... ....-...+-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666655542 11222233445555 6778888888877655555667777766665
Q ss_pred HHHc---------cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC-hH---HHHHHH---hh-CCC------C
Q 010031 406 ACWY---------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-VD---KALNFI---NK-MPE------T 462 (520)
Q Consensus 406 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~~~------~ 462 (520)
.|-. ....++|+..|.+.-+ +.|+...=-.++..+.-.|. .+ +..++. .. ... .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 2246778877777543 45554322223333333332 11 222222 11 111 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+-.-+.+++.++.-.|+.++|.+.+++++++.|.....-..+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 4455667888889999999999999999999988766544443
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.015 Score=46.52 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
.+.--..|..++...|++.+|...|++...--+.-|......+.++....++...|...++.+.+...-..++.....+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33344456667777777777777777776644445666777777777777777777777777664322122234455677
Q ss_pred HHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 441 NLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
+.|...|++.+|...|+.... -|++..-......+.+.|+.++|..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 777777777777777777654 3444433333333455565544443
No 187
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0015 Score=60.86 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=60.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
...+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++.... +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 34455667777777777777773 443 3466666777777778888877777776421 234556777777777778
Q ss_pred ChHHHHHHHhhCCC
Q 010031 448 QVDKALNFINKMPE 461 (520)
Q Consensus 448 ~~~~A~~~~~~~~~ 461 (520)
++++|+..|++...
T Consensus 85 ~~~eA~~~~~~al~ 98 (356)
T PLN03088 85 EYQTAKAALEKGAS 98 (356)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888777777654
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00017 Score=49.07 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.+|..+...+...|++++|+..|+++++++|+++.++..+|.++.+.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999998
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.12 Score=50.44 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=139.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCh
Q 010031 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110 (520)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 110 (520)
+.+.-.++.+|++.....-+-+ +.. -.+...-.+-+.+| -|++++|.+++-++.++|. .|..+.+.|++
T Consensus 708 l~tAE~AFVrc~dY~Gik~vkr-l~~---i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-----Aielr~klgDw 776 (1189)
T KOG2041|consen 708 LDTAEHAFVRCGDYAGIKLVKR-LRT---IHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-----AIELRKKLGDW 776 (1189)
T ss_pred hhhHhhhhhhhccccchhHHHH-hhh---hhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-----hHHHHHhhhhH
Confidence 3445567778888765422111 110 01112222333333 4899999999988887765 46667777888
Q ss_pred hHHHHHHHHhhhCCC--CCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 111 QSCISHFVFMLRLSV--RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
-...++++.--. +. ..-...++.+...++....|++|.+.+..-.. -...+.++.+..++++-+.+.+
T Consensus 777 frV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 777 FRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHH
Confidence 777776653211 11 01123677777788888888888888765321 1235677777777777766666
Q ss_pred cCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH---
Q 010031 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT--- 265 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 265 (520)
.+.+ +....-.+.+.+...|.-++|.+.|-+...|. +.+..|...+++.+|.++-+...-|.+.+.-
T Consensus 847 ~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~ 916 (1189)
T KOG2041|consen 847 TLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQ 916 (1189)
T ss_pred hcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 6543 45666777888888888888888776665543 3345566778888888887776655433211
Q ss_pred -----------HHHHHHHhCCChhHHHHHHHHHHH
Q 010031 266 -----------AMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 266 -----------~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
--|..+.+.|++-+|-+++.+|.+
T Consensus 917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 123344556666666666666654
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.48 E-value=0.075 Score=48.03 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=122.3
Q ss_pred cCChhHHHHHHhhCCC-CCHH--HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHH
Q 010031 212 IGYLRKAVELFGMMPK-KNVA--SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFF 285 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (520)
.|+++.|.+-|+.|.. |... -...|.-..-+.|+.+.|...-+.....- ...+...+...|..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 5666666666666654 2211 11222222234566666655555443321 2355666677777777777777776
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHhh---ccCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 286 QMLDAG-VRANDF--TVVSALSACA---KVGALEAGVRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGETK 358 (520)
Q Consensus 286 ~m~~~~-~~p~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (520)
.-.... +.++.. .-..++.+-. -..+...|...-.+..+. .|+..- ...-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 654432 233321 1112222111 112334444444333332 233221 1223456677777777777777665
Q ss_pred C--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh
Q 010031 359 E--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 359 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
+ |++..+. +....+.|+ .+..-+++..+ ..++||.. +...+..+....|++..|..--+.... ..|...
T Consensus 291 K~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres 363 (531)
T COG3898 291 KAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRES 363 (531)
T ss_pred hcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhh
Confidence 5 3333222 222334444 33333333322 12455544 666666777777887777766666543 367777
Q ss_pred HHHHHHHHHhc-cCChHHHHHHHhhCCC
Q 010031 435 HHTVVVNLLSR-VGQVDKALNFINKMPE 461 (520)
Q Consensus 435 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 461 (520)
.|..|.+.-.. .|+-.++...+-+...
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 77766666543 4777778777776554
No 191
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.00047 Score=56.77 Aligned_cols=101 Identities=12% Similarity=-0.042 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
+..+...+..+.+..+..-....|..++..+...|++++|+..+++... .|+ ..+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432222223355677888889999999999999998753 222 34788888999999999999999
Q ss_pred HHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 488 LQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 488 ~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+++++++.|..+..+..++.++...|
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.43 E-value=0.00026 Score=55.80 Aligned_cols=93 Identities=11% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP--ETPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
-+...|++++|..+|+-+.. .+ .-+...+..|..++-..+++++|+..+.... ...|+........++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34567788888887777663 21 2344556677777777777888877776532 23445555666677777788888
Q ss_pred HHHHHHHHhcCCCCCcch
Q 010031 484 AKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~~ 501 (520)
|+..|+.+++ .|.+...
T Consensus 124 A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 124 ARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHHHHh-CcchHHH
Confidence 8887777776 4554443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00069 Score=45.83 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV 466 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 466 (520)
..|++++|+++++++.... +-+...+..++.+|.+.|++++|.++++++.. .|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3556666666666655422 22444555566666666666666666666554 34433
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.036 Score=44.48 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTA 367 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 367 (520)
.|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++.+ ..+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444444444555555555555555444332333444444444444444444444444443332 11222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+...+...|.+.+|+.-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 34444444444444444444444
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0018 Score=56.31 Aligned_cols=125 Identities=16% Similarity=0.028 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC---ChHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QVDKAL 453 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 453 (520)
.+....-++.-... .| |...|..|..+|...|+++.|...|....+-. ++++..+..+..++.... ...++.
T Consensus 138 ~~~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444444444443 45 55699999999999999999999999988643 455667777777765433 466889
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 454 NFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 454 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.+|+++.. +| |......|...+...|++.+|...|+.+++..|.+..-...+-
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 99999775 44 5566777777899999999999999999998776554444433
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.006 Score=46.22 Aligned_cols=93 Identities=15% Similarity=0.285 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHh
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 444 (520)
+..++-..|+.++|+.+|++....|...... .+..+...+...|++++|..+++.....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4556677899999999999998888765532 677777888889999999999988875432111 1222233455677
Q ss_pred ccCChHHHHHHHhhCC
Q 010031 445 RVGQVDKALNFINKMP 460 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~ 460 (520)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999888876544
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=8.6e-05 Score=41.75 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhhhccCCCcccC
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~~~e 520 (520)
.++++++++|+++.++..+|.+|...|+.+..++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999876543
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0026 Score=57.36 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=106.5
Q ss_pred hHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCcHHHHHHHHHHcHhhcCCCCChhH----
Q 010031 363 LTWTAM-IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT--ACWYSGQVKLALNFFDSMRFDYFIEPSVKH---- 435 (520)
Q Consensus 363 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---- 435 (520)
.+|..+ ..++.-.|++++|..+--...+. .++. .+..+++ ++...++.+.+...|++... +.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhH
Confidence 344444 34566788999998887777663 3322 3333343 34457888999999988764 3455321
Q ss_pred ---------HHHHHHHHhccCChHHHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 436 ---------HTVVVNLLSRVGQVDKALNFINKMPE------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 436 ---------~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+..=.+-..+.|++.+|.+.+.+... +|+...|.....+..+.|+.++|+...+++++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 12223445688999999999998764 355667777777888999999999999999999999999
Q ss_pred hhHHHHhhhhhccCCC
Q 010031 501 AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 ~~~~l~~~~~~~g~~~ 516 (520)
++...+.++...++.+
T Consensus 323 all~ra~c~l~le~~e 338 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWE 338 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776643
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0046 Score=55.50 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665432 1222223222222 22234455566666665543 334555555555555
Q ss_pred HhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
...++.+.|+.+|+.... + ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556566555555444 1 112455555555555555555555555554
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.037 Score=47.08 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=88.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH-----HH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-----AL 337 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 337 (520)
..+.++..+...|.+.-....+++..+...+.++.....+.+...+.|+.+.|...++...+..-..+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456677777778888888888888887666677777778888888888888888888776543333333333 33
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 398 (520)
...|.-.+++..|...++++... ++..-|.-.-+..-.|+..+|++..+.|.+. .|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccc
Confidence 34455667777777777776652 3444444444444567777777777777773 44433
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.017 Score=50.50 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc---CcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
|...|-.|..+|...|+.+.|..-|.+..+ +.|+ ...+..+..++... .+..++..+++++.+. -+-++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 667888888888888888888888888877 3443 33555555554332 2456778888887742 13345566
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHH
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALF 472 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 472 (520)
..|...+...|++.+|...|+.|.. -|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 6777788888888888888888775 23333444444
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.11 Score=45.52 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHhhccCChHHHHHHHHHHHHcCCC
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV---VSALSACAKVGALEAGVRVHNYISCNDFG 328 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (520)
+-.....+...|++++|.+.|+++...-..+ .... ..+..++.+.++++.|...+++..+..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3344555667788888888888887753221 2222 34556677888888888888887766443
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.011 Score=44.78 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC--CChhHHHHHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMY 341 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 341 (520)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888887775544 234555666677778888888877777654211 0112222233344
Q ss_pred HhcCCHHHHHHHHh
Q 010031 342 AKCGNIEAASLVFG 355 (520)
Q Consensus 342 ~~~~~~~~a~~~~~ 355 (520)
...|+.++|.+.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 55566655555543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.017 Score=49.12 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=31.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCcc---hhHHHHhhhhhccCCC
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQ---AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 516 (520)
+..-|.+.|.+..|..-++.+++..|+.+. ++..++..|.+.|...
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 445577888888888888888888887664 4566677777776643
No 205
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.028 Score=55.00 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHhhcc-----CChHHHHHHHHHHHHcC
Q 010031 292 VRANDFTVVSALSACAKV-----GALEAGVRVHNYISCND 326 (520)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 326 (520)
.+.+...|...+++.... ++...|..+|++..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE 372 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 345556666666654321 23556666666666554
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.023 Score=49.65 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHhcCCCCC--c----ccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 241 MRKGDLKKAGELFEQMPEKG--V----VSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
...|++++|.+.|+++.... . ...-.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455555555555544321 1 11234556677777788888888777765
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.037 Score=53.14 Aligned_cols=258 Identities=15% Similarity=0.123 Sum_probs=144.7
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCC
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (520)
.+....+.+-+..|...|.+++|.++----. ...-|.-|.......=+++-|.+.|.+.. .-
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVR----------------dl 614 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVR----------------DL 614 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHh----------------cc
Confidence 3444555555666777787777765422111 11223333333333333444443333322 12
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (520)
.+-+.+.-++++++.|-.|+.... ...++-.|++.+|.++|.+ .|.+ +..+.+|.....++.|.+++.
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 244555567778888877876543 3445667888888888764 3322 234455555556666666654
Q ss_pred cCCCC--------------ChhHHHHHHHHHHHcCCHHHHHHHHHH------HHHCCCCC---CHHHHHHHHHHHHccCc
Q 010031 356 ETKEK--------------DLLTWTAMIWGLAIHGRYEQAIQYFKK------MMYSGTEP---DGTVFLAILTACWYSGQ 412 (520)
Q Consensus 356 ~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~p---~~~~~~~l~~~~~~~g~ 412 (520)
..... ++.--.+....+...|+.++|..+.-+ +.+-+-+. +..+...+...+.+...
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 43220 111111233444556666666554321 12211122 23355555555566777
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH-----------HHHHHHHHHHHcCC
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV-----------IWGALFCACRTHKD 480 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----------~~~~l~~~~~~~g~ 480 (520)
+.-|-++|.+|-. ...++......+++.+|..+-++.++ .|+.. -+...-.+|.+.|+
T Consensus 763 ~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 7888888888752 13467778889999999999998876 34432 23344467889999
Q ss_pred HHHHHHHHHHHhc
Q 010031 481 TKIAKIALQSSCS 493 (520)
Q Consensus 481 ~~~A~~~~~~~~~ 493 (520)
..+|.++++++-.
T Consensus 833 ~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 833 QREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHhhh
Confidence 9999999988753
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.32 Score=47.99 Aligned_cols=110 Identities=19% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-.++-+..+ ++.-|.-++.++
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 34445566677888888888877764 5788888888899999999988777655543 245677788999
Q ss_pred hccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
.+.|+.++|.+++.+...-+ -...+|.+.|++.+|.+..-+
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999998876422 466777778888777765433
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.035 Score=47.19 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC----CCCChhHHHHHHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----IEPSVKHHTVVVN 441 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~ 441 (520)
+.++..+.-.|.+.-....+++.++...+.+......|.+.-.+.||.+.|..+|++..+..+ +.-...+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555555555566655543333444555555555556666666666665443221 1111112222233
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.|.-++++.+|...+.+++. +.++...+.-.-+..-.|+...|++.++.+++..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34444555555555555544 122333333333344455555666666666655553
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0005 Score=48.07 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCCC-----C---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMPE-----T---PD-FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.+++.+..+|.+.|++++|+..+++... . |+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777777777777766442 1 22 345667777788888888888888887654
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0061 Score=50.41 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=62.4
Q ss_pred CCcccHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----------------CChHHHHH
Q 010031 259 KGVVSWTAMINGFSQ-----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV----------------GALEAGVR 317 (520)
Q Consensus 259 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 317 (520)
++-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555555543 356666667777888888888888888888877542 23556788
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 318 VHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
++++|...|+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888765543
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0056 Score=55.43 Aligned_cols=119 Identities=13% Similarity=-0.012 Sum_probs=61.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
-...+.+.|++..|..-|++.+.. -.. .+.-+.++.... . ..-..+++.+..+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKA-E--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhh
Confidence 356777888888888888886652 100 000000111000 0 011224455555566666
Q ss_pred ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 448 QVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 448 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++.+|++..++... ++|.....--..++...|+++.|+..|+++++++|+|..+-..+..+
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 66666666655443 34444444455555666666666666666666666665554444443
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.07 Score=51.40 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
.+.+.++-+++...+..+...+...+.+...+.-|-++|++|-.. ..++......+++++|..+-++.-+
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe- 801 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE- 801 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc-
Confidence 333444444444444444444555555555666666666665431 2344445566777777766665532
Q ss_pred cCCCCChhH-----------HHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 427 YFIEPSVKH-----------HTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 427 ~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+.||+.. |...-.+|.++|+..+|..+++++..
T Consensus 802 --~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 802 --FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3444321 12223466777888888888877653
No 214
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.0039 Score=41.61 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...+...|++++|...|+++++. .|+.. .+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666653 34333 555555566666666666666666553
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.0095 Score=52.49 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 439 (520)
|...+..+.+.|++++|...|+.+++. .|+. ..+..+...|...|++++|...|+.+...+.-.|. ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445567788888888887773 4443 35666777777788888888888887754422222 3344456
Q ss_pred HHHHhccCChHHHHHHHhhCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+.++...|+.++|.++++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777888888888877654
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.013 Score=48.47 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CcHHHHHH
Q 010031 360 KDLLTWTAMIWGLAI-----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS----------------GQVKLALN 418 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 418 (520)
++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455666666666654 466777777888888989999999999999876542 25577899
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++++|. .+|+-||..++..+++.+++.+.
T Consensus 125 lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 999998 68999999999999999987764
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.0031 Score=56.82 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=144.2
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCcc----cHHHHHHHHhccCChhhHHHHHHHHH--Hh--CC-CCChhHHHHHHH
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRPNRL----TYPFVSKSVASLSLLSLGRGLHCLIV--KS--GV-EYDAFVRVHLAD 172 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~l~~ 172 (520)
.-+++.|+....+.+|+...+-|- -|.. .|..|-.+|.-.+++++|.+.+..=+ .. |- .-.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357888888888888888888653 2332 34444555555667777766644211 11 10 011223333444
Q ss_pred HHHhcCChhHHHHHhccCC----CCCC-CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC-CHHHHHHHHHHHHhcCCH
Q 010031 173 MYVQLGKTRGAFKVFDETP----EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-NVASWVSLIDGFMRKGDL 246 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 246 (520)
.+--.|.+++|.....+-+ +.|- ......+..+...|...|+.-.. ..| +...++.=+ ...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev-----~~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEV-----TSAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHH-----HHHH
Confidence 4445555666554432211 1110 11122333333333333321000 000 000000000 0012
Q ss_pred HHHHHHHhc-------CCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHhhccCCh
Q 010031 247 KKAGELFEQ-------MPEK--GVVSWTAMINGFSQNGEAEKALAMFFQML----DAGVR-ANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 247 ~~a~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~ 312 (520)
+.|.++|.+ +..+ ....|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+..++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 223333322 1111 13466777777777788888876654422 22322 1234566677777888888
Q ss_pred HHHHHHHHHHH----HcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHcCCH
Q 010031 313 EAGVRVHNYIS----CNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---------KDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 313 ~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 378 (520)
+.|.+.|+... +.|- ......+-+|.+.|.-..++++|+.++.+-.. -....|-+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888887643 2232 23445566788888888888888887765332 1335677788888888888
Q ss_pred HHHHHHHHHHHH
Q 010031 379 EQAIQYFKKMMY 390 (520)
Q Consensus 379 ~~a~~~~~~~~~ 390 (520)
++|+.+.+.-.+
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.56 Score=46.44 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (520)
.+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-.++-+..+. +.-|.-++.+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 355556666778899999999888775 58888999999999999999998888777653 5667788899999
Q ss_pred cCCHHHHHHHHHHHh
Q 010031 478 HKDTKIAKIALQSSC 492 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~ 492 (520)
.|+.++|..++-+.-
T Consensus 757 ~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG 771 (829)
T ss_pred cccHHHHhhhhhccC
Confidence 999999999887763
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.0094 Score=51.29 Aligned_cols=103 Identities=17% Similarity=0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDFVIWGA 470 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 470 (520)
.|+.-+. +...|++..|...|....+.+ +-+ ...+-.|.+++...|++++|..+|..+.. +.-+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4655554 346677888888888887643 222 23445588899999999999988887654 123456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
+.....+.|+.++|...|+++.+.+|+.+.+...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777888999999999999999999988776544
No 220
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.83 E-value=0.003 Score=35.52 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788899999999999999999999999986
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.80 E-value=0.0024 Score=35.96 Aligned_cols=33 Identities=18% Similarity=-0.094 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999974
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.80 E-value=0.072 Score=49.94 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=75.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHH--HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFV--IWGALFCA 474 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~ 474 (520)
+=..+..++.+.|+.++|++.++++.+.........+...|+.+|...+.+.++..++.+-.. -|... .|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566777789999999999999986553223345778899999999999999999988653 23333 45554433
Q ss_pred HHHcCC---------------HHHHHHHHHHHhcCCCCCcchhH
Q 010031 475 CRTHKD---------------TKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 475 ~~~~g~---------------~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
++..|+ -..|.+.++++++.||.-|..+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 333333 23477899999999999887654
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.79 E-value=0.22 Score=42.34 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
.....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++...+.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344556777888888888888776521 1122344556667777788888888887776654
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.77 E-value=0.46 Score=44.14 Aligned_cols=352 Identities=8% Similarity=0.024 Sum_probs=183.8
Q ss_pred hcCCChHHHHHHhcccCC------------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCC----CCCccc
Q 010031 74 SLHKSIDYALSIFDHFTP------------------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV----RPNRLT 131 (520)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~ 131 (520)
-+.+.+++|++.+..... ++-..=+..+..++..|++.++..++++|...=. .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 467899999988864322 1112234556788999999999999999886433 367888
Q ss_pred HHHHHHHHhccC--------Ch-------hhHHHHHHHHHHh------CCCCChhHHHHHHHHHHhcC--ChhHHHHHhc
Q 010031 132 YPFVSKSVASLS--------LL-------SLGRGLHCLIVKS------GVEYDAFVRVHLADMYVQLG--KTRGAFKVFD 188 (520)
Q Consensus 132 ~~~ll~~~~~~~--------~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~ 188 (520)
|+.++-.+++.= .. +.+.-...++... .+.|.......++....-.. +..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888655554321 11 1122222222221 12233333333333322211 1111222222
Q ss_pred cCCCCCCCCCchh-HHHHHHHHHhcCChhHHHHHHhhCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCC--
Q 010031 189 ETPEKNKSESVLL-WNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-- 257 (520)
Q Consensus 189 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 257 (520)
.....-+.|+-.. ...+...+.+ +.+++..+.+.+.. .=..++..++....+.++...|...+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2222223343222 2223333333 44444444433332 234577888888889999888877766543
Q ss_pred CCCc-------ccHHHHHHHHHhC----CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH---hhccC-ChHHHHHHHHH
Q 010031 258 EKGV-------VSWTAMINGFSQN----GEAEKALAMFFQMLDAGVRANDF-TVVSALSA---CAKVG-ALEAGVRVHNY 321 (520)
Q Consensus 258 ~~~~-------~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~---~~~~~-~~~~a~~~~~~ 321 (520)
+|+. .+-..+.+..+.. -+...=+.+|+......+ |.. ....++.+ +=+.| .-++|..+++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 2321 1222233333311 112233445555544432 221 11222222 22334 47888888888
Q ss_pred HHHcCCCCChhHHHHH----HHHHHhc---CCHHHHHHHH---hcCCC-----CChhHHHHHHHH--HHHcCCHHHHHHH
Q 010031 322 ISCNDFGLKGAIGTAL----VDMYAKC---GNIEAASLVF---GETKE-----KDLLTWTAMIWG--LAIHGRYEQAIQY 384 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l----~~~~~~~---~~~~~a~~~~---~~~~~-----~~~~~~~~l~~~--~~~~~~~~~a~~~ 384 (520)
+.+.- ..|...-|.+ -..|.+. ..+..-..+- ++..- .+...-|.|..+ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 87642 2233332222 2222221 1122222211 11111 233345555544 5678999999877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHH
Q 010031 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438 (520)
Q Consensus 385 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 438 (520)
-.-+.+ +.|+..+|..+.-+.....++++|..++..+ ||+..++++
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~ds 530 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDS 530 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHH
Confidence 777776 8999999999988889999999999998775 677666655
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.69 E-value=0.026 Score=43.24 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
...|+..+..+++.+|+..|++..|+++++...+.++++.+...|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777888888888888888888888888887777777777777776643
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.54 Score=43.61 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHH
Q 010031 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIR 102 (520)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 102 (520)
+..++..+++-|...+..+..+++++++.+. .+.-+.++..-++.-....++.....+|.+... -++..|...+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 4445566666666666666666666666432 122334444455544445566666666654432 34455555544
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.63 E-value=0.041 Score=42.61 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEP--DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...+.|++++|.+.|+.+...-... ....-..++.++.+.|++++|...+++..+.+.-.|++. |-..+.+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH
Confidence 3344566666666666655531110 112444555556666666666666666554333333321 2222333222111
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.+..+.-+-. .+-| .+....|...|+++++..|+++-+-
T Consensus 98 ~~~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 98 DEGSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hhhHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhHH
Confidence 1111111110 0111 2235689999999999999987554
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.09 Score=41.80 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc
Q 010031 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (520)
Q Consensus 367 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (520)
....-+...|++++|..+|+-+.-. .| +..-+..|..++-..+++++|+..|..... .. .-|+..+-....+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHH
Confidence 3444556789999999999888773 33 344566677777778899999998887753 21 2334444557888889
Q ss_pred cCChHHHHHHHhhCCCCCC
Q 010031 446 VGQVDKALNFINKMPETPD 464 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~ 464 (520)
.|+.+.|+..|+....+|.
T Consensus 118 l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 118 MRKAAKARQCFELVNERTE 136 (165)
T ss_pred hCCHHHHHHHHHHHHhCcc
Confidence 9999999999888776554
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.0055 Score=45.75 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHH----HHHHHHHHHHHcC
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFV----IWGALFCACRTHK 479 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~~l~~~~~~~g 479 (520)
+....|+++.|++.|.+...- .+.....||.-..++.-.|+.++|++-+++..+ .+... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 566788888888888887632 345667888888888888888888888887654 12211 2222333477788
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 010031 480 DTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~ 497 (520)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888776554
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.0086 Score=55.63 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
.++.+..+|...|++++|+..|++..+ +.|+. ..|..+..+|...|++++|++.++++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666553 24443 2356666666666666666666666553
No 231
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.013 Score=40.17 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
..+.+.+++++|.++++++.. ..|+.. .+......+...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345556666666666666666 334333 455555566666666666666666654
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.43 E-value=0.04 Score=50.01 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh---hcC-CCCChh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKM----MYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF---DYF-IEPSVK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~~ 434 (520)
.|..|...|.-.|+++.|+..-+.- .+-|-+. ....+..+..++.-.|+++.|.+.|+.... ..| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666666677788999998665432 2223222 223788888888889999999999887542 111 112234
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCC-Ccc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL-----NLS-IPQ 500 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~ 500 (520)
+-.+|...|.-..++++|+.++.+=.. .-....+.+|..++...|..++|+...+..+++ +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 445788888888889999988876321 134567888999999999999999998888753 222 334
Q ss_pred hhHHHHhhhhhccCCC
Q 010031 501 AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 ~~~~l~~~~~~~g~~~ 516 (520)
+...+.......|.++
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 5566666666666644
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.18 Score=46.39 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=85.3
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCC-C------cchHHHHHHHHHh---CCChhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 010031 68 QLISSASLHKSIDYALSIFDHFTPK-N------LHIFNVLIRGLAE---NSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 137 (520)
.++-.|....+++..+++++.+... + ...-....-++-+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566777777777777776542 1 1111122334445 6777777777777555555566677776666
Q ss_pred HHhcc---------CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 138 SVASL---------SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 138 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
.|... ...+.|...+.+.-+ +.||...--.++..+...|.......-++++ ...++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i--------~~~l~---~l 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKI--------GVKLS---SL 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHH--------HHHHH---HH
Confidence 55321 123444444444333 2233333223333333333211111000000 00111 11
Q ss_pred HHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccH
Q 010031 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (520)
..+.|..+.. .+-..+.+++.+..-.|+.+.|.+..+++.......|
T Consensus 293 lg~kg~~~~~---------~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 293 LGRKGSLEKM---------QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHhhcccccc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1122221111 3444566777777777888888888777776555555
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.37 E-value=0.71 Score=43.33 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP---DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKH 435 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 435 (520)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++...... +..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccccc
Confidence 44578888888999999999999888887743211 22344444555667888889998888876411 1111 111
Q ss_pred HHHHHHHHhccCChHHHHHHH-hhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 436 HTVVVNLLSRVGQVDKALNFI-NKMPETPDFVIWGALFCACRTH------KDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...+...+.. ..+.....- .....+.-...+..+...+... ++.+++...|.++.++.|+...++..++.+
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 000000000 0000000112333333334444 888999999999999999999999999988
Q ss_pred hhhcc
Q 010031 509 MQQKG 513 (520)
Q Consensus 509 ~~~~g 513 (520)
+...-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 87653
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.36 E-value=0.57 Score=40.28 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred HhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc-----
Q 010031 342 AKCGNIEAASLVFGETKEK------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY----- 409 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----- 409 (520)
.+.|++++|.+.|+.+... ...+.-.++.++.+.++++.|+...++....- -.||. -|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 4456666666666655542 11234445666667777777777777766631 12222 33333333321
Q ss_pred --cCcHHH---HHHHHHHcHhhc---CCCCChhH------------HHHHHHHHhccCChHHHHHHHhhCCCC-CC----
Q 010031 410 --SGQVKL---ALNFFDSMRFDY---FIEPSVKH------------HTVVVNLLSRVGQVDKALNFINKMPET-PD---- 464 (520)
Q Consensus 410 --~g~~~~---a~~~~~~~~~~~---~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---- 464 (520)
..|... |..-|+.+.+++ ...||+.. =..+.+.|.+.|.+..|..-+++|.+. |+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 123333 333333333322 11122111 124567788999999999988888762 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
....-.+..+|...|-.++|...-+-+-.-.|+++
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 23455666789999999999887766555567665
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.045 Score=43.72 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHH 436 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 436 (520)
....++..+...|++++|..+++.+.. ..| +...|..+|.++...|+...|.+.|+++.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566677778888888888888887 455 445888888888888888888888877643 46778877653
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.29 E-value=0.11 Score=48.59 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHc---------cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 378 YEQAIQYFKKMMY-SGTEPDGT-VFLAILTACWY---------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 378 ~~~a~~~~~~~~~-~~~~p~~~-~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
.+.|..+|.+... +.+.|+.. .|..+..++.. ..+..+|.++.++..+.. +-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4456666666651 12455543 33333332221 223445555555555321 33455555566666666
Q ss_pred CChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 447 GQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
|+++.|...|++... .|| ..+|......+.-.|+.++|.+.++++++++|.-..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 667777777776554 343 4455555556666777777777777777777754443
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.28 E-value=0.66 Score=40.24 Aligned_cols=218 Identities=18% Similarity=0.112 Sum_probs=138.1
Q ss_pred ChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010031 276 EAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLV 353 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 353 (520)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443211 12345555555666666666666666665542 2233444555556666666667777777
Q ss_pred HhcCCC--CCh-hHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 354 FGETKE--KDL-LTWTAMIW-GLAIHGRYEQAIQYFKKMMYSGTEP----DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 354 ~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
+..... ++. ........ .+...|+++.|...+++... ..| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 766554 211 22223333 67788999999999988855 333 223444444456678899999999988874
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 426 DYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 426 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.. +. ....+..+...+...++++.|...+..... .|+ ...+..+...+...|+.+.+...+.+.++..|.
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 22 33 356777888888888899999999888765 344 445555555555777899999999999998887
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.28 E-value=0.22 Score=46.63 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...++.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|++++|++.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666555 345432 355555666666666666666665553
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.0099 Score=41.41 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhh---cCC-CCC-hhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFD---YFI-EPS-VKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
+++.+...|...|++++|+..+++..+. .|- .|. ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566666666666666666666665431 110 111 345667777777777777777777653
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.18 E-value=0.25 Score=47.37 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 010031 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (520)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (520)
....+.++..+.+.|..+.|+.+...- ..-.+...+.|+++.|.++.++.. +...|..|.....+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHc
Confidence 334666777777777777777765331 123455567777777777766554 556777777777777
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++.
T Consensus 361 g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 361 GNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777765 35666667777777777666666666554 23444455555566666655554
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.17 E-value=0.033 Score=43.13 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=32.3
Q ss_pred HhccCChHHHHHHHhhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 443 LSRVGQVDKALNFINKMPET-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
..+.|++++|++.|+.+..+ -....-..++.++.+.|++++|...+++.++++|.+|.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34556666666666665441 11223444555666666666666666666666665554
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=1.7 Score=43.78 Aligned_cols=220 Identities=12% Similarity=0.061 Sum_probs=146.6
Q ss_pred CCCCCHHHHHHHHHhccCchHHHH----HHHHHHHhC------------CCCChHHHHHHHHHHhcCCChHHHHHHhccc
Q 010031 26 SNNITETHIISLIHSSNSTKQLRQ----IHAQIILHN------------LFASSRITTQLISSASLHKSIDYALSIFDHF 89 (520)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~~~~a~~----~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 89 (520)
.++.+.+.+..++..+++.-.-.- +.+-+...+ ..........-++.+.+..-++.|..+.+.-
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 456677788888888886533333 333333222 1122344556778888888899999888765
Q ss_pred CCCCc---chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 90 TPKNL---HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 90 ~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
.-+.. .........+.+.|++++|..-|-+-... +.| ..++.-|....++.+--..++.+.+.|+. +...
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 43222 23334445677899999999988776542 223 33666777777777888888999998874 5555
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (520)
-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny 506 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNY 506 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCH
Confidence 6679999999999999988887766 3321 12244566777777888888777665554 344444443 356889
Q ss_pred HHHHHHHhcCCCC
Q 010031 247 KKAGELFEQMPEK 259 (520)
Q Consensus 247 ~~a~~~~~~~~~~ 259 (520)
++|++.+..++-+
T Consensus 507 ~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 507 EEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHhcCCHH
Confidence 9999999988744
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.05 E-value=0.39 Score=46.74 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCcHHHHHHHHHHcHhhcCC--CCChhHHHHHHHHHhccCChHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
..+.+.|.++++.+.+ .-|+...|...- +.+...|++++|++.+++......- +.....+.-++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567888899999888 478877655443 3566789999999999875421111 1223455667788888999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHhc
Q 010031 452 ALNFINKMPET--PDFVIWGALFCA-CRTHKDT-------KIAKIALQSSCS 493 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 493 (520)
|.+.|.++... -+..+|..+..+ +...|+. ++|..++.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999988762 334455544444 5567777 788888887754
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.04 E-value=0.031 Score=44.19 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred HHHHHHH---HHHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHH
Q 010031 399 VFLAILT---ACWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFC 473 (520)
Q Consensus 399 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 473 (520)
+...|+. .-...++.+++..+++.+.. +.|... .-..-...+.+.|++.+|+.+|+++.. .|....-..|+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4444444 44577899999999999875 355533 222344557789999999999999876 355555566666
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.|.....-..-..+.+++++..| ++.+...+..+....+
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGA-DPDARALVRALLARAD 124 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence 65554433445666667777665 4555555554444433
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.04 E-value=0.55 Score=37.07 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+..+.++. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34556666666777777777777777652 45557777777776543 3344444432 112223334666667
Q ss_pred ccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+.+-++++.-++.++.. +...+..+... ++.+.|.+.+.+ ++++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777653 22233333333 777777777765 3466677666665543
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.051 Score=46.94 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 438 (520)
.|+..+.. .+.|++..|..-|...++.. |+. ..+-.|..++...|++++|..+|..+.+.++-.|.. ..+-.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 45677888888888888752 322 255667788888888888888888887766555543 57777
Q ss_pred HHHHHhccCChHHHHHHHhhCCC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|..+..+.|+.++|..+|+++..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888888888765
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.92 E-value=1.8 Score=42.00 Aligned_cols=364 Identities=10% Similarity=0.010 Sum_probs=177.1
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHh-CCChhHHHHHHH
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAE-NSHFQSCISHFV 118 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~~~~~~A~~~~~ 118 (520)
+...+..++..++..- |.-.--|......=.+.|..+.+.++|++... .++..|...+..+.. .|+.+...+.|+
T Consensus 60 ~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455666777766552 22334455666666678899999999987654 455566666665444 577888888888
Q ss_pred HhhhC-CCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh-----cCChhHHHHHhccCC
Q 010031 119 FMLRL-SVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ-----LGKTRGAFKVFDETP 191 (520)
Q Consensus 119 ~m~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~ 191 (520)
..... |..- ...-|...|..-..++++.....++++.++.-...=...|.......-. ....+.+.++-....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 87763 3322 3335666777667788888888888888763111001111111111111 112222222211111
Q ss_pred --------------------CCCCCCCch--hHHHHHHH-------HHhcCChhHHHHHHhhCCC-----------CCHH
Q 010031 192 --------------------EKNKSESVL--LWNVLING-------CSKIGYLRKAVELFGMMPK-----------KNVA 231 (520)
Q Consensus 192 --------------------~~~~~~~~~--~~~~l~~~-------~~~~g~~~~a~~~~~~~~~-----------~~~~ 231 (520)
..+-+.+.. ..+.+-.. +...-........++.-.+ ++..
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 000000000 01111111 1111112222222222222 2345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 308 (520)
+|..-+..-.+.|+.+.+.-+|+...-+- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-....-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 66666777777777777777777765442 233444444444457766666666555443222222221111122334
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH---HHHhcCCC--CChhHHHHHHHH-----HHHcCCH
Q 010031 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS---LVFGETKE--KDLLTWTAMIWG-----LAIHGRY 378 (520)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~--~~~~~~~~l~~~-----~~~~~~~ 378 (520)
.|++..|..+++.+...- +.-..+-..-+....+.|+.+.+. +++..... .+......+.-- +.-.++.
T Consensus 379 ~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 567777777777776543 212222233344455566666665 33333322 122222222211 2234566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
+.|..++.++.+. +.++...|..++..+..
T Consensus 458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 458 DLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 6777777776663 33344455555554443
No 249
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.89 E-value=0.014 Score=32.66 Aligned_cols=33 Identities=15% Similarity=-0.071 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.+|..+...+...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367778888999999999999999999999854
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=1.5 Score=44.20 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
...-++.+.+...++.|..+-+.-..... .......+.+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 34455666677777777776655433221 23344455667888999998888776543 3332 244455666
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGLAIHGRYEQAIQYFKKM 388 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 388 (520)
.....-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6677777788888888864 455567788999999999988888887663211 12445666677777777776665544
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHH----HHHHHhhCCCC
Q 010031 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDK----ALNFINKMPET 462 (520)
Q Consensus 389 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 462 (520)
.. .......++ -..+++++|+++++.+- |+ ..+.+.....+... ..++ .++++......
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~slp------~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~ 554 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSLP------ISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQ 554 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC------HHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCC
Confidence 32 333333333 35688999999887763 22 12222222222221 2233 23333322210
Q ss_pred CCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 463 PDFVIW----GALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 463 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+..... ..+-....-.++++.-...++.+.+..|+++.
T Consensus 555 ~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 555 GKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 000000 11112233456777777777777777777665
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=0.76 Score=36.27 Aligned_cols=128 Identities=8% Similarity=0.031 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCC
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 108 (520)
.....++..+...+.+.....+++.+...+ ..++..++.++..|++.+ .++..+.++. ..+......++..|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 344567777777777888888888887776 356778888888887653 3333344442 233444555666666666
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010031 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (520)
-++++.-++.++.. +...+..+... ++.+.|.+.... ..++..|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 66666666665532 22233333333 555555555443 124445555555443
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.64 Score=38.08 Aligned_cols=129 Identities=11% Similarity=0.026 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh----hHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL--AILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTV 438 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 438 (520)
|..++.+.. .+.+ +.....+++....-.-...++. .+...+...|++++|...++.... . +.|. ..--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-~--t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-Q--TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-c--chhHHHHHHHHHH
Confidence 333444332 3333 4555556666532222222333 334567889999999999998763 1 2221 12235
Q ss_pred HHHHHhccCChHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 439 VVNLLSRVGQVDKALNFINKMPETPDFV--IWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
|.+.....|.+++|+..++.... ++.. ....-...+...|+.++|...|+++++..++++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 67788899999999999998875 3333 234445679999999999999999999885443
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.19 Score=45.93 Aligned_cols=140 Identities=13% Similarity=-0.029 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA--IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 413 (520)
.-.+.|.+.|++..|..-|+.+.. .+. ..-+.++.. ... ..-..++..+..++.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~-----------~l~~~~~~~~ee~~-~~~-------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVS-----------FLEYRRSFDEEEQK-KAE-------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHH-----------HhhccccCCHHHHH-HHH-------HHHHHHhhHHHHHHHhhhhH
Confidence 345678889999988887766432 000 000111111 111 11233566677777777788
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHH-HHHHHHHHHHcCC-HHHHHHHHHH
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVI-WGALFCACRTHKD-TKIAKIALQS 490 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~g~-~~~A~~~~~~ 490 (520)
..|++...+.... -++|+...-.-..+|...|+++.|+..|+++.. .|+... -..++....+..+ .++..++|.+
T Consensus 274 ~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777642 145566666667777777888888888877665 455443 3334443333333 3445777777
Q ss_pred HhcCCC
Q 010031 491 SCSLNL 496 (520)
Q Consensus 491 ~~~~~p 496 (520)
|+...+
T Consensus 352 mF~k~~ 357 (397)
T KOG0543|consen 352 MFAKLA 357 (397)
T ss_pred Hhhccc
Confidence 776544
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.55 E-value=1.7 Score=39.08 Aligned_cols=18 Identities=11% Similarity=-0.169 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 010031 475 CRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~ 492 (520)
+.+.++++.|.+.|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777766543
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.49 E-value=0.14 Score=40.80 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH-----HcCCCCChhHH
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-----CNDFGLKGAIG 334 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 334 (520)
..++..+...|++++|..+.+.+.... +.+...+..+|.++...|+...|.+.|+.+. +.|+.|++.+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344555566666667766666666653 4455666666777777777776666666552 24666665543
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.16 Score=38.92 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=40.5
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCHHHHHHHHHHHH
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDFVIWGALFCACR 476 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~ 476 (520)
...+.|+..+..+++.+|+..|++..|+++++.... +-+..+|..|+.-+.
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455678889999999999999999999999988654 344778888886543
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.72 Score=44.27 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=95.1
Q ss_pred HHHHhCCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 269 NGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
+...-.++++++.++...-. -..+ | ......++.-+.+.|..+.|..+... +. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 44556777777766664111 1112 2 33466677777778888877776432 21 234556678888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..|+-.|...|+.+...++.+.... .
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-R 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-c
Confidence 88888877665 556888888888888888888888877543 44555566677887777666666553 2
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
| -++....++.-.|+.++..+++.+...
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 1 244555556667888888888777654
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.35 Score=42.98 Aligned_cols=118 Identities=12% Similarity=-0.063 Sum_probs=59.2
Q ss_pred hCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChh
Q 010031 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF----VRVHLADMYVQLGKTR 181 (520)
Q Consensus 106 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 181 (520)
..|++.+|-..++++.+ ..+.|...+...=++|.-.|+...-...++++... -.+|.. +...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555554 23344445555555555556555555555555432 012221 2222223334556666
Q ss_pred HHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+|++.-++..+.+ +.|..+..++...+-..|+..++.+...+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 6666666555554 4455555555555555566665555554433
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=95.30 E-value=0.093 Score=49.15 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhc---------cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC
Q 010031 412 QVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSR---------VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK 479 (520)
Q Consensus 412 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 479 (520)
..+.|..+|.+......+.|+. ..|..+..++.. .....+|.+..++..+ +.|+.....+..+..-.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4667888888887444466663 455555544432 2345567777777665 467777778888888888
Q ss_pred CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 480 DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.+.|...|++++.++|+.+.++.+.|++..-.|+.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999998865
No 260
>PRK09687 putative lyase; Provisional
Probab=95.20 E-value=2.2 Score=38.26 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG-QVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+..+-...+.++.+.++ .++...+-.+.+ .+|...-...+.++...+ +...+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333344444544444 344444444443 333333333333443322 12344444444442 3444455555
Q ss_pred HHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
+.++.+.|+ ..|+..+-+....++ .....+.++...|+. +|...+.++++.+|
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666666665 344444444333333 223455556666664 46666666666666
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.13 E-value=0.034 Score=31.65 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999996654
No 262
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.11 E-value=0.11 Score=40.38 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred HHHHHHHHH---HHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhCCCC-CCHHHHHHHH
Q 010031 398 TVFLAILTA---CWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKMPET-PDFVIWGALF 472 (520)
Q Consensus 398 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~ 472 (520)
.+.+.|+.. -...++.+++..+++.+.- +.|+.. .-..-...+...|++++|+.+|+++... +....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 3457889999999998875 345432 2222445567889999999999998874 3434444444
Q ss_pred HHHH-HcCCHHHHHHHHHHHhcCCC
Q 010031 473 CACR-THKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 473 ~~~~-~~g~~~~A~~~~~~~~~~~p 496 (520)
..|. ..||.+ =..+...+++..+
T Consensus 85 A~CL~al~Dp~-Wr~~A~~~le~~~ 108 (153)
T TIGR02561 85 ALCLNAKGDAE-WHVHADEVLARDA 108 (153)
T ss_pred HHHHHhcCChH-HHHHHHHHHHhCC
Confidence 4444 455544 4555555555443
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=1.1 Score=38.16 Aligned_cols=205 Identities=13% Similarity=0.082 Sum_probs=109.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.|..-..+|...+++++|...+.+..+. ...+ ..+... ...++.|.-+.+++.+. +--...++.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555555666667777776666555431 1111 111111 12234444444444432 122334555566677
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCcHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GT--EPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
.+|.++.|-..+++.-+ .....++++|+++|++...- +- +.-...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77776666554443221 22345677777777775441 10 011124455555667777777766
Q ss_pred HHHHHcHh---hcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 418 NFFDSMRF---DYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPE------TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 418 ~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
..+.+-.. ...--++. ..|-..|-+|.-..++..|.+.++.-.. +.+..+...|+.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 55544321 01112222 3355566667777889999999887332 23456777777776 67888887776
Q ss_pred HHH
Q 010031 488 LQS 490 (520)
Q Consensus 488 ~~~ 490 (520)
+..
T Consensus 250 l~s 252 (308)
T KOG1585|consen 250 LSS 252 (308)
T ss_pred HcC
Confidence 643
No 264
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.03 E-value=0.083 Score=33.06 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 469 GALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
..+.-++.+.|++++|.+..+.+++.+|+|.++......+-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 345667899999999999999999999999998876655543
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=2 Score=36.68 Aligned_cols=202 Identities=9% Similarity=0.047 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
.|.--..+|...+++++|...+.+..+ .+-.++ +.....++.|.-+.++|.+. ..-...|......|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 455555667777778877776655431 011111 12223355666666666652 22234566667778888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C---ChhHHHHHHHHHHHcCCHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE------K---DLLTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~~~ 380 (520)
|..+.|-..+++.-+. ...-++++|++++++... + -...+......+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8888877777765432 112234444444433221 1 12345556667778788877
Q ss_pred HHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC--CCChhHHHHHHHHHhccCChHHHH
Q 010031 381 AIQYFKKMMYS----GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 381 a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|-..+.+-... .-.|+. ..|...|-.+....++..|...++.-.+-.++ +-+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 76666543221 112333 25666666777788999999999884432222 23456777788776 457878777
Q ss_pred HHHhh
Q 010031 454 NFINK 458 (520)
Q Consensus 454 ~~~~~ 458 (520)
+++..
T Consensus 248 kvl~s 252 (308)
T KOG1585|consen 248 KVLSS 252 (308)
T ss_pred HHHcC
Confidence 77654
No 266
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.01 E-value=3.4 Score=39.36 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 372 (520)
.....+++..+.......-++.+..+|...| -+...+..++++|... ..+.-..+|+++.+ .|++.-..|+..|
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3334444444444444444444444444433 2333344444444444 23333344443322 2222223333333
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP---D---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
.+ ++.+.+..+|.++... +-| + ...|..+... -..+.+....+..++..+.|...-...+.-+-.-|...
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 33 4445555555554432 111 0 0133333321 13455666666666665555544455555555666677
Q ss_pred CChHHHHHHHhhCCC
Q 010031 447 GQVDKALNFINKMPE 461 (520)
Q Consensus 447 g~~~~A~~~~~~~~~ 461 (520)
.++++|++++.-+.+
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 777777777776554
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.98 E-value=2.1 Score=36.89 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHH
Q 010031 309 VGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
.+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555544322 1356677788888899999998888876542 34456777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 383 QYFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
..+.........+. ........ .+...|+++.|...+.+... ..| ....+......+...++.+++...+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 99999988543331 22222233 68899999999999999853 233 23344445555678899999999999
Q ss_pred hCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 458 KMPE-TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 458 ~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+... .++ ...+..+...+...|+++.|...+..+++..|.....+...+..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 8765 333 56788888889999999999999999999999866666666666663
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=2.2 Score=37.58 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
....|++.+|..+|...... .| +......+..+|...|+++.|..++..+-.+.. .........-+..+.+.....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 34456666666666665553 22 223444555566666666666666655532110 011111122233344444444
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCCcchhHHHHhhhhhcc
Q 010031 451 KALNFINKMPETP-DFVIWGALFCACRTHKDTKIAKIALQSSCSL--NLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 451 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 513 (520)
+...+-.+.-..| |...-..+...+...|+.+.|.+.+=.+++. .-++..+-..+..++...|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444433333 3444445555566666666666655555543 2234444444444444444
No 269
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.95 E-value=0.0033 Score=50.13 Aligned_cols=130 Identities=9% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChh
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 111 (520)
..++..+...+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .-...++..|.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345667777788888888999888877677789999999999999888888888884322 44556778888888888
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (520)
+|.-++.++.... ..+..+...++++.|.+.... .+++.+|..+++.+...+.
T Consensus 88 ~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 8888887764311 111123344555555533322 2456677777776655544
No 270
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=4.5 Score=40.41 Aligned_cols=139 Identities=18% Similarity=0.109 Sum_probs=78.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++..-|+-++|..+.++|.... .|-.. -...+..+|+-.|+.....+++.-... ...-|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3445567777888888877642 33222 223344567777777666666655442 223445555555566666777
Q ss_pred hHHHHHHHhhCCCC--CCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc---chhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPET--PDFVI--WGALFCACRTHKDTKIAKIALQSSCSLNLSIP---QAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 514 (520)
.+....+++-+.+. |.... -.+|.-+|.-.|+ .+|+.+++-+.+ +|.+. .++..++.++.|.-+
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 77777777766653 33332 2233344555555 558888887766 55443 344445555555433
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.85 E-value=0.99 Score=43.98 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=94.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----ccCcHHHHHHHHHHcHhhcCCCCChhHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSG-TEPDG-----TVFLAILTACW----YSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 437 (520)
++....=.||-+.+++.+.+..+.+ +.-.. -.|...+..++ ...+.+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566677776666655421 11111 12333333332 245788999999999864 36655554
Q ss_pred -HHHHHHhccCChHHHHHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH-Hhhh
Q 010031 438 -VVVNLLSRVGQVDKALNFINKMPE-T-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC-QTFM 509 (520)
Q Consensus 438 -~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~ 509 (520)
.-.+.+...|++++|++.+++... . .....+.-+...+...+++++|...+.++.+.+.-+...|.++ |.++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345677789999999999998654 1 2233455677778889999999999999999877777666664 4555
Q ss_pred hhccCC
Q 010031 510 QQKGDG 515 (520)
Q Consensus 510 ~~~g~~ 515 (520)
...|+.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 566654
No 272
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.79 E-value=5.4 Score=40.56 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (520)
+...|. +|-.|.|.|++++|.++...... ........+...+..+...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 344554 67779999999999999966654 3445566778888888765
No 273
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.74 E-value=0.083 Score=46.82 Aligned_cols=100 Identities=9% Similarity=0.000 Sum_probs=58.4
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPETPD--FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 482 (520)
-|.+.|.+++|+..|..... +.| ++.++..-..+|.+..++..|..-++....-.+ ...|.--+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 35666777777777666553 233 566666666667776666666665555443111 123444444445567777
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
+|.+-++.++++.|++...-..++.+
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 77777777777777765554444433
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.65 E-value=0.76 Score=41.42 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCC-----CCChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRA---NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (520)
.+|..+.+++-+..++.+++.+-+.-... |..| .-....++..+....+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555555555566666555443332 2222 112233455566666777777777777654321 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-------CChh------HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE-------KDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEP 395 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p 395 (520)
++..|...|.+..++++|.-+..+... .|.. +...|.-++...|..-.|.+..++..+ .|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777888888888777655443322 2221 223344566677777777777766543 34333
Q ss_pred CHH-HHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 396 DGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 396 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
... ....+...|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 55566677778888888887777653
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.64 E-value=1.1 Score=35.75 Aligned_cols=114 Identities=16% Similarity=0.038 Sum_probs=64.8
Q ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHH-H
Q 010031 365 WTAMIWG---LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI-LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV-V 439 (520)
Q Consensus 365 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l 439 (520)
.+.|+.. -...++.+++..++..+.- ++|.......+ ...+...|++.+|..+++.+... .|....-.. +
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALl 84 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHH
Confidence 3444443 3467899999999999988 67776633322 33467899999999999998753 233222223 3
Q ss_pred HHHHhccCChH---HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 440 VNLLSRVGQVD---KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 440 ~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
..++...|+.+ .|.++++. .+|+.+ ..++..+....+...|...
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~---~~d~~a-~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLES---GADPDA-RALVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhc---CCChHH-HHHHHHHHHhccccchhhh
Confidence 34444444432 23333322 233333 3455555555555445443
No 276
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.49 E-value=0.067 Score=29.52 Aligned_cols=31 Identities=13% Similarity=-0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
+..+..++.+.|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456677888999999999999999999975
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.45 E-value=0.61 Score=42.04 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHhccC-chH----HHHHHHHHHHhCCCCChHHHHHHHHHHhc--C----CChHHHHHHhcccCC---
Q 010031 26 SNNITETHIISLIHSSNS-TKQ----LRQIHAQIILHNLFASSRITTQLISSASL--H----KSIDYALSIFDHFTP--- 91 (520)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~-~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~--- 91 (520)
-.......++..+...+. ++. ...+++.+.+.|...+..++-+....... . .....|..+++.|.+
T Consensus 55 lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 55 LRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 344455677777777775 544 46788888888887777666554433332 2 234567777777764
Q ss_pred ----CCcchHHHHHHHHHhCCC----hhHHHHHHHHhhhCCCCCCcc--cHHHHHHHHhccCC--hhhHHHHHHHHHHhC
Q 010031 92 ----KNLHIFNVLIRGLAENSH----FQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSL--LSLGRGLHCLIVKSG 159 (520)
Q Consensus 92 ----~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~ 159 (520)
++-.++..++.. ..++ .+.+..+|+.+.+.|...+.. ..+.++..+..... ...+.++++.+.+.|
T Consensus 135 fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 233344444443 2222 245566677777666654333 23333332222211 345666777777777
Q ss_pred CCCChhHHHHH
Q 010031 160 VEYDAFVRVHL 170 (520)
Q Consensus 160 ~~~~~~~~~~l 170 (520)
+++....|..+
T Consensus 213 ~kik~~~yp~l 223 (297)
T PF13170_consen 213 VKIKYMHYPTL 223 (297)
T ss_pred CccccccccHH
Confidence 66665555543
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.44 E-value=0.45 Score=41.27 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----------------ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG----------------ALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
++.+-....++.|.+-|+.-|..+|..++..+-+.. +-+-++.++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 445555566677777788888888887777665432 2345788899999999999999999999
Q ss_pred HHHHhcCCH
Q 010031 339 DMYAKCGNI 347 (520)
Q Consensus 339 ~~~~~~~~~ 347 (520)
+++.+.+-.
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 999887754
No 279
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.38 E-value=6.8 Score=39.95 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=74.9
Q ss_pred HcCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 374 IHGRYEQAIQYFKKMMYS-GTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~-~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
...+.+.|...+...... +..+... +...+.......+..+++...++.... . ..+......-+....+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-~--~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-R--SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-c--cCCcHHHHHHHHHHHHccCHH
Confidence 456779999999987553 3333332 344444444444336677777776542 1 234444555566666899999
Q ss_pred HHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 451 KALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 451 ~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+...+..|... -...-..=+..++...|+.++|...|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998752 2222233355666779999999999999844
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.33 E-value=0.54 Score=42.32 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=107.8
Q ss_pred hcCCHHHHHHHHhcCCCC--C----cccHHHHHHHHHhCCChhHHHHHHHH-HHHc-CCCCCH---HHHHHHHHHhhccC
Q 010031 242 RKGDLKKAGELFEQMPEK--G----VVSWTAMINGFSQNGEAEKALAMFFQ-MLDA-GVRAND---FTVVSALSACAKVG 310 (520)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~-~~~p~~---~~~~~l~~~~~~~~ 310 (520)
...+.++|+..+.+...+ + ..++..+..+.+..|.+++++..--. |.-. ...-+. ..|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666554332 1 34566667777777777766543221 1110 011111 22333444444444
Q ss_pred ChHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--ChhHHHHHHHHHHHcCC
Q 010031 311 ALEAGVRVHNYISCN-DFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~ 377 (520)
++.+++.+-+.-... |..+ .......+..++...+.++++.+.|+...+ + ....+..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 455555444433221 1111 112223455566666667777766665443 1 12356677777777777
Q ss_pred HHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHccCcHHHHHHHHHHcHhh---cCCCCC-hhHHHHHHHHHh
Q 010031 378 YEQAIQYFKKMMY----SGTEPDGTVF-----LAILTACWYSGQVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLS 444 (520)
Q Consensus 378 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~ 444 (520)
+++|.-+..+..+ -++.--..-| ..+.-++...|.+..|.+.-++..+- .|-.+. ......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 7777766555433 1222111122 22333455666666666666665431 121221 223445666777
Q ss_pred ccCChHHHHHHHhhC
Q 010031 445 RVGQVDKALNFINKM 459 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~ 459 (520)
..|+.+.|..-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 777777776666653
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=2.5 Score=33.99 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=91.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH--HHHHHHHhccCC
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQ 448 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 448 (520)
+.+.+..++|+.-|..+.+.|..--++ .-..........|+...|...|+++-....+|.-..-. ..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778899999999998876653332 22233344567899999999999987543322211111 122345678899
Q ss_pred hHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 449 VDKALNFINKMPETPDF---VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
++....-++.+..+.++ ..-..|.-+..+.|++..|.+.|..+.. +...|......+.++.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 99998888887653332 2345677778899999999999998876 44455555555554443
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.13 E-value=0.33 Score=36.62 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh--hHHHHHHHHHhc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV--KHHTVVVNLLSR 445 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 445 (520)
.-++...|+.+.|++.|.+.+. +-| ....|+.-..++.-.|+.++|+.=+.+..+-.|-+-.. ..|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3466788999999999999888 454 55689999999999999999999998887644433211 234444566778
Q ss_pred cCChHHHHHHHhhCCC
Q 010031 446 VGQVDKALNFINKMPE 461 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~ 461 (520)
.|+.+.|..-|+..-.
T Consensus 128 ~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQ 143 (175)
T ss_pred hCchHHHHHhHHHHHH
Confidence 8999999888877543
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.09 E-value=0.67 Score=40.21 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHhcCC--CCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 010031 352 LVFGETK--EKDLLTWTAMIWGLAI-----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG------------- 411 (520)
Q Consensus 352 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 411 (520)
..|..+. ++|-.+|...+..|.. .+.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 3566677777776654 3455666667788888899999999999888765532
Q ss_pred ---cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh
Q 010031 412 ---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449 (520)
Q Consensus 412 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (520)
+-.=++.++++|. .+|+.||-.+-..|++++.+.|..
T Consensus 135 YP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3345788999998 689999999999999999988763
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.08 E-value=0.46 Score=38.94 Aligned_cols=96 Identities=11% Similarity=-0.038 Sum_probs=51.6
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHK 479 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g 479 (520)
+...|++.+|..-|..+... +++. ...|..-..++.+.+.++.|++-..+..+ .|. .....--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44556666666666665532 1222 12344444556666667777666666553 221 111112223466666
Q ss_pred CHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 480 DTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.+++|+.-|+++++.+|..-.+-..
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHH
Confidence 7777777777777777765544433
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.07 E-value=1.6 Score=35.95 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH--HH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT--VV 439 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 439 (520)
.+..++.-|.+.|+.+.|.+.|.++.+....|... .+..+++.+.-.+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45667777788888888888888887765555544 566677777777888877777777653211111111111 11
Q ss_pred --HHHHhccCChHHHHHHHhhCCC
Q 010031 440 --VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 --~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
.-.+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 1223356788888777766543
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.00 E-value=0.079 Score=31.83 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+..+...|.+.|++++|+++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.93 E-value=2.2 Score=32.57 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=72.8
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHhcCCH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---TALVDMYAKCGNI 347 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 347 (520)
+.-.|..++..++..+...+. +..-++.+|--....-+-+-..+.++.+-+ -.|...+ ..++.+|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence 345677777777777766542 334455554444444444444444444322 2233222 3445555544432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.......+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++-+
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 233455667777888888888888887652 367777778888888888888888888888763
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.91 E-value=10 Score=40.32 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=93.4
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++.-=.+.-...|.+....+.....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 55666666665554 22344445555567777777776643222222334444444555566666666655543
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH
Q 010031 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF--TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
+ ..--+.+|...|+|.+|+.+-.++... -+.. +-..|..-+...++.-+|-++..+.... ..
T Consensus 967 k-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~ 1030 (1265)
T KOG1920|consen 967 K-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PE 1030 (1265)
T ss_pred c-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HH
Confidence 2 123456677788888888887766431 1221 2245666677777777777777665422 12
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEK 360 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (520)
..+..|++...+++|..+.....+.
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccc
Confidence 3455677778888888887766643
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=2.7 Score=35.64 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 010031 479 KDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~ 497 (520)
+|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555553
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.77 E-value=0.22 Score=39.54 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=84.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC
Q 010031 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (520)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 213 (520)
.++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 36777888889999999999999877667788999999999999888999888883332 33345677778888
Q ss_pred ChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh
Q 010031 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (520)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (520)
.++.+.-++.++...+. .+..+...++++.|.+.+.+.. +...|..++..+...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCcc
Confidence 88888777766543110 0001122233334433333332 356777787777666543
No 291
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.72 E-value=6.6 Score=37.44 Aligned_cols=395 Identities=7% Similarity=-0.024 Sum_probs=191.7
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCChhHHHHHhcc
Q 010031 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM-YVQLGKTRGAFKVFDE 189 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~ 189 (520)
.....+|+..... ...|...|..-+..+.+.+.+.+...+|..|.... +.++..|..-... |-....++.|+.+|.+
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4556666666542 44588888888888878888999999999999864 2344555444433 3334449999999988
Q ss_pred CCCCCCCCCchhHHHHHHHHHh----c-----------CCh----hHHHHHHhhCCCCCHH--HHHHH---HHHHHhcCC
Q 010031 190 TPEKNKSESVLLWNVLINGCSK----I-----------GYL----RKAVELFGMMPKKNVA--SWVSL---IDGFMRKGD 245 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~----~-----------g~~----~~a~~~~~~~~~~~~~--~~~~l---~~~~~~~~~ 245 (520)
-++.+ +.++..|-...+.-.. . ++. +.....+.... ++.. .+... .+.......
T Consensus 166 gLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~-~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 166 GLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYA-NSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred HhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhc-cchhhhhcchhhcchHHHHHHHH
Confidence 87763 3344444443332111 0 011 00000000000 1100 00000 000000000
Q ss_pred HHH-HHHHHhcCCC---CCcccHHHHHHHH----H---------------hCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 246 LKK-AGELFEQMPE---KGVVSWTAMINGF----S---------------QNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 246 ~~~-a~~~~~~~~~---~~~~~~~~l~~~~----~---------------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
..+ -..+.+.+.. .++.+|.-+..-. . -..+.+....+|++.... .|+...+...
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~Y 321 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECY 321 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 000 0111111211 1233333222211 1 111233445667666653 5666666666
Q ss_pred HHHhhccC------ChHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCCH-HHHHHHHhcCCCCChhHHHHHHHHHH
Q 010031 303 LSACAKVG------ALEAGVRVHNYISCND-F-GLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLA 373 (520)
Q Consensus 303 ~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~l~~~~~ 373 (520)
|..|...- .......+++...+.+ . +.....|..+.-.+...... +.|..+..+....+...|-.-++...
T Consensus 322 I~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~ 401 (568)
T KOG2396|consen 322 ITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLI 401 (568)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHH
Confidence 66664332 3334444555544332 1 22344555555555555443 33444444555556666555555444
Q ss_pred Hc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCCChhH-HHHHHHHHhccCCh
Q 010031 374 IH-GRYEQA-IQYFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKH-HTVVVNLLSRVGQV 449 (520)
Q Consensus 374 ~~-~~~~~a-~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 449 (520)
.. .+.+-- ..++......-..+-...|+.... ......-.+.....+..+. .|+..+ -+.+++-+.+.|-.
T Consensus 402 ~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-----~~~~~tl~s~~l~~~~e~~~~ 476 (568)
T KOG2396|consen 402 ESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-----GADSVTLKSKYLDWAYESGGY 476 (568)
T ss_pred hhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc-----CCceeehhHHHHHHHHHhcch
Confidence 22 122111 122222322211222223333330 1111111222222222222 344443 34677777788888
Q ss_pred HHHHHHHhhCCC--CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 450 DKALNFINKMPE--TPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+|.+.+.++.. +|+...+..++.. -...-+...+..+|+.++.....++..|...-..-...|.++
T Consensus 477 ~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 477 KKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence 888888888665 4566777777654 222334777888888888777788888877777766777765
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.59 E-value=7.1 Score=37.36 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
-..+..++.+.|+.++|++.+++|.+....-| ......|+.++...+.+.++..++.+.-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34466666778888888888888876421112 2267778888888888888888888764
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.22 E-value=0.59 Score=35.61 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 430 EPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE--TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.++..+--.+.+++.+..+ ..+-+.+++++.. .|+ ......|.-++.+.|+++++.++++..++.+|+|+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5666666778888887765 4455677777653 333 23444555678999999999999999999999999998
Q ss_pred HHHHhhhhhcc
Q 010031 503 SYCQTFMQQKG 513 (520)
Q Consensus 503 ~~l~~~~~~~g 513 (520)
..--.+.++..
T Consensus 109 ~Lk~~ied~it 119 (149)
T KOG3364|consen 109 ELKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHHh
Confidence 87766666543
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=20 Score=41.41 Aligned_cols=62 Identities=16% Similarity=-0.067 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+|....+...++|+++.|...+-.+.+..-+..+...+......|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46788888888889999999988877665434556667777789999999999999999965
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.15 E-value=3.9 Score=33.09 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHh
Q 010031 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 187 (520)
++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444556666666666666666666655544444
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.98 E-value=4.1 Score=32.94 Aligned_cols=99 Identities=7% Similarity=-0.029 Sum_probs=55.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH----HHHHhcc
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG----AFKVFDE 189 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~ 189 (520)
++.++-+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +.... |.+++.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455555667888888888889999888887654 444555565555544333322221 12222 3333333
Q ss_pred CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+.. .+..+++.+...|++-+|+++.+...
T Consensus 88 L~~--------~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LGT--------AYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhh--------hHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 321 23445555666666666666665543
No 297
>PRK09687 putative lyase; Provisional
Probab=92.98 E-value=6.6 Score=35.29 Aligned_cols=220 Identities=11% Similarity=-0.011 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHhhhCCCCCCcccHHHHH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF----QSCISHFVFMLRLSVRPNRLTYPFVS 136 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll 136 (520)
++..+....+..+...|..+-.-.+..-...++...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 44555555555555555433222222222334554455555555555543 3455555555321 24444444444
Q ss_pred HHHhccCChhh--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC-
Q 010031 137 KSVASLSLLSL--GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG- 213 (520)
Q Consensus 137 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 213 (520)
.+++..+.... -....+.+...-..++..+-...+.++.+.++. .+...+-.+.+. ++...-...+.++.+.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCC
Confidence 44444332110 011222222211223444555555555555542 344443333332 12233333333333322
Q ss_pred ChhHHHHHHhhCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 214 YLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 214 ~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
....+...+..+. .++..+-...+.++.+.++....-.+.+.+..++ .....+.++...|.. +|...+..+..
T Consensus 189 ~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 189 DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 1223333332222 2455555555555555555332222222222222 122344444555543 34444444443
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=6.2 Score=34.95 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHH---HHHHHHHHcCCHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWT---AMIWGLAIHGRYEQ 380 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~l~~~~~~~~~~~~ 380 (520)
.....|++..+...|+........ +....-.++.+|...|+.+.|..++..+..... .-+. .-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888888887765433 345556678888888888888888888775311 1111 12333333333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 381 AIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 381 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...+-++... .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334333 45 34455556666777777777776554443
No 299
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.92 E-value=5.7 Score=34.41 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=28.6
Q ss_pred HHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 270 GFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
.-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|....++..+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3445555666666665555431 11123344444455555566666666555555443
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=3.8 Score=34.81 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=13.5
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCC
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
...+++.+|+.+|++.....-+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44666677777776665443333
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.73 E-value=14 Score=38.21 Aligned_cols=190 Identities=15% Similarity=-0.001 Sum_probs=100.8
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGA-------IGTALV-DMYAKCGNIEAASLVFGETKE--------KDLLTWTAMIW 370 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~ 370 (520)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667788888777765432222211 222221 223456788888777665443 35567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHHccCcHH--HHHHHHHHcHhhcCC-C----CChhHHHH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILT--ACWYSGQVK--LALNFFDSMRFDYFI-E----PSVKHHTV 438 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~--~~~~~g~~~--~a~~~~~~~~~~~~~-~----~~~~~~~~ 438 (520)
+..-.|++++|..+.+...+..-.-+.. .|..+.. .+...|... +....+......... . +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887765532222322 3333322 345566332 223333333221111 1 12234455
Q ss_pred HHHHHhcc-CChHHHHHHHhhCCC-CCCHH-H---HHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 439 VVNLLSRV-GQVDKALNFINKMPE-TPDFV-I---WGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 439 l~~~~~~~-g~~~~A~~~~~~~~~-~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
+..++.+. +...++..-++--.. .|.+. . +..++......|+.++|...+.++..+..
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 55555552 122222222222111 23322 1 22566778889999999999999876533
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.62 E-value=0.29 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.041 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888888875
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.47 E-value=1.3 Score=35.44 Aligned_cols=134 Identities=12% Similarity=0.010 Sum_probs=76.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh-HHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF-VRVHL 170 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 170 (520)
.-..|...++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-+. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344554444 455667777777777777755322111 01111123456677777777777776644333322 11111
Q ss_pred --HHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC
Q 010031 171 --ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (520)
Q Consensus 171 --~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (520)
.-.+...|.++.....++-+...+-+.-...-..|.-+..+.|++.+|.+.|.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456777777777777766655344444555666667778888888888877765
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.45 E-value=1.9 Score=35.59 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=58.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc--ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-Chh------
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR--LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAF------ 165 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------ 165 (520)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+..+|+.....+++..+.....+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35666777788888888888888887775444433 245667777777788877777777665532211 111
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 166 VRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 166 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
+|..|. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222222 334678888777776554
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.42 E-value=11 Score=36.26 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=121.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
.|....-+++..+.......-...+..++.. .+-..|..++++|... ..+.-..+++++.+. ..|.+.+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 4555566788888888888888888887775 5667888999999988 557888999999884 4455555555555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCC------hhHHHHHHHHHhccCChHHHHHHHhhCCCC----CCHHHHHHHHHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPS------VKHHTVVVNLLSRVGQVDKALNFINKMPET----PDFVIWGALFCACR 476 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~ 476 (520)
+...++.+++..+|.++... +-|. ...|..+...- ..+.+....+..++..+ .-...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55559999999999998743 2331 12444444321 34566666666666542 22334455556677
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 477 THKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 477 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
...++.+|++++..+++.+..|.-+...+...++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999988877776665555443
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.38 E-value=0.39 Score=27.21 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKM 388 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~ 388 (520)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666663
No 307
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=8.6 Score=34.68 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH----HHHHHHHHhcCCHHH
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG----TALVDMYAKCGNIEA 349 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~ 349 (520)
+|++.+|-..++++++. .+.|...+...=.+|.-.|+.+.-...++++... ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555543 2344444444445555555555555555555432 11222222 222233345556666
Q ss_pred HHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 350 ASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (520)
Q Consensus 350 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 387 (520)
|.+.-++..+- |.-.-.+....+...|+..++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66555555442 222333444444555555555555443
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.20 E-value=1.9 Score=38.23 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 438 (520)
++..++..+...|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+.+.. ..|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4555666666677777777777777663 33 445777777777777777777777766643 3566666665544
Q ss_pred HHHH
Q 010031 439 VVNL 442 (520)
Q Consensus 439 l~~~ 442 (520)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.17 E-value=3.7 Score=37.12 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccC--cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+.++.+|+.+.+.|+..+.. ....++..+.... .+.++.++++.+. +.++++....|..++-.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 356778888888878776544 3333333322222 2557888888887 467888777776655433
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.16 E-value=7.4 Score=33.85 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=119.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc-----CCCCChh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA---GV--RANDFTVVSALSACAKVGALEAGVRVHNYISCN-----DFGLKGA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 332 (520)
+...++..+.+.|++++....|.+|+.- .+ .-+..+.+.++.......+.+....+++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3444566667777777777776666531 11 123455666666666666665555555433211 1111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKEK---------------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPD 396 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~ 396 (520)
+-..|...|...+.+.+..++++++... -...|..-|+.|...++-..-..+|++...-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345667777777777777777665430 12467777888888888777778888765522 2333
Q ss_pred HHHHHHHHHHH-----HccCcHHHHHHHHHHcHhhcCC--CCC---hhHHHHHHHHHhccCC----hHHHHHHHhhCCCC
Q 010031 397 GTVFLAILTAC-----WYSGQVKLALNFFDSMRFDYFI--EPS---VKHHTVVVNLLSRVGQ----VDKALNFINKMPET 462 (520)
Q Consensus 397 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 462 (520)
+. ....|+-| .+.|.+++|-.-|-++.+.+.- .|. ..-|..|...+.+.|- .++|. -.+..
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 33 33444444 3567888776544443322221 222 1235566666666651 11111 11123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
|.......++.+|.. ++..+-.+++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 556667778887754 455444444433
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.15 E-value=0.29 Score=26.23 Aligned_cols=32 Identities=16% Similarity=-0.126 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.|..+...+...|+++.|...++++++..|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 56677778888999999999999998888753
No 312
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.06 E-value=20 Score=38.62 Aligned_cols=256 Identities=14% Similarity=0.070 Sum_probs=151.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010031 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 298 (520)
..+...+..++..+-...+..+.+.+..+....+...+..++...-...+.++...+........+..++.. +|...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 345555556888888888888887776554444555555555444444444444433221222333344432 55555
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 378 (520)
-...+.++...+..+ .. .+-...+ .++..+-...+.++.+.+..+. +......++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 555566655443211 11 2222221 4566666667777776655433 33334456666666777777776654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 379 EQ-AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 379 ~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+. +...+..+.+ .+|...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 33 3455555554 56777777788888888876655454555543 4566666667788887775 45667776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 458 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+...|+...-...+.++.+.+....+...+.++++
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666678888777788888776434567778877776
No 313
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.88 E-value=4.6 Score=30.89 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMP--ETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.....-+..+...|+-+.-.++...+. .++++.....+..+|.+.|+..++.+++.++.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556677778888888888887765 3688888888999999999999999999988764
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.86 E-value=0.46 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|..++.++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666667777777777776666
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.49 E-value=22 Score=38.02 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
+.+|...|+|.+|+.+..++.. .-+.. +-..|+.-+...++.-+|-++..+... .| ...+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhH
Confidence 3444555555555555544432 11111 124455556666666666666655542 12 1234445566
Q ss_pred CChHHHHHHHhhCC
Q 010031 447 GQVDKALNFINKMP 460 (520)
Q Consensus 447 g~~~~A~~~~~~~~ 460 (520)
..+++|..+.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 66777776666554
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.47 E-value=10 Score=34.11 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHhcCCCC----CcccHHHHHHH-------HHhCC-ChhHHHHHHHHHHHc----C----CCCCH----
Q 010031 241 MRKGDLKKAGELFEQMPEK----GVVSWTAMING-------FSQNG-EAEKALAMFFQMLDA----G----VRAND---- 296 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~-------~~~~~-~~~~a~~~~~~m~~~----~----~~p~~---- 296 (520)
.+.|+.+.|...+.++... ++.....+... ....+ ++++|..++++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777766532 22222222222 23445 666776666665432 1 12222
Q ss_pred -HHHHHHHHHhhccCChH---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 297 -FTVVSALSACAKVGALE---AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 297 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
.++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+++..|..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 23344555555555433 333344444322 222334443444555555666666666665554
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.12 E-value=8.4 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=13.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
||--+.+.+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444455555555555555555554443
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=1.7 Score=38.55 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred HhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-CCc-----chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-KNL-----HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
..|.+.+..+...++.......+++++...+-.++. ++. .+-..+++.+. .-++++++.++..=.+.|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 345566667777778777778899999888776654 221 12223344333 34778999999998999999999
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 010031 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (520)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (520)
++++.+|+.+.+.+++.+|..+...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887654
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.25 E-value=22 Score=35.79 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=37.4
Q ss_pred hcCCHHHHHHHHhcCCC-------C-CcccHHHHHHHHHhCC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 010031 242 RKGDLKKAGELFEQMPE-------K-GVVSWTAMINGFSQNG-----EAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (520)
Q Consensus 242 ~~~~~~~a~~~~~~~~~-------~-~~~~~~~l~~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 308 (520)
...+.+.|..+|+.+.+ . .......+..+|.+.. +.+.|..++.+.-+.| .|+...+...+.-...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGT 339 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCC
Confidence 34455555555555432 1 1334444555555432 3344555555555554 3333332222222222
Q ss_pred -cCChHHHHHHHHHHHHcC
Q 010031 309 -VGALEAGVRVHNYISCND 326 (520)
Q Consensus 309 -~~~~~~a~~~~~~~~~~~ 326 (520)
..+...|..+|....+.|
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHHHcC
Confidence 234455555555555554
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.18 E-value=0.82 Score=25.17 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.14 E-value=2.7 Score=30.38 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556666677777889999999999999999999999999999986554 33336766654
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=44 Score=38.96 Aligned_cols=296 Identities=9% Similarity=0.019 Sum_probs=163.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcccHHHHHHHHHhCCC
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQ-MPEKGVVSWTAMINGFSQNGE 276 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 276 (520)
.+..+-.+.+.+.+|..++++-.. .....+..+...|...+++|....+... ...+ .....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 445566778889999999988422 1223455555588888888887777663 3332 33445556778899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHh
Q 010031 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFG 355 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 355 (520)
+..|...|+.+...+ ++...+++.++......|.++...-..+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 4447788888888888888887777655544322 2222222 222334456667776666655
Q ss_pred cCCCCChhHHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCC--------CH-HHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 356 ETKEKDLLTWTAM--IWGLAIHG--RYEQAIQYFKKMMYSGTEP--------DG-TVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 356 ~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p--------~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
..+..+|... +..+.+.. +.-.-....+.+++.-+.| +. ..|..++....- -+.+.-.+.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l-- 1616 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIEEL-- 1616 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence 3444555444 33333222 2222222333333321221 10 123333322111 1111111111
Q ss_pred cHhhcCCCCChh------HHHHHHHHHhccCChHHHHHHHhh------CCC---CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 423 MRFDYFIEPSVK------HHTVVVNLLSRVGQVDKALNFINK------MPE---TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 423 ~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~------~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
.+..++.. .|-.-+..=....+..+-+-.+++ |.. ..-..+|....+..+..|.++.|...
T Consensus 1617 ----~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1617 ----KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred ----hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 12233221 111111111111122222222222 111 12345788888889999999999999
Q ss_pred HHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 488 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+-++.+.. -|.++...+..+.+.||..
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~ 1719 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDEL 1719 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHH
Confidence 99988776 5688888899999998864
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.93 E-value=7.4 Score=30.60 Aligned_cols=51 Identities=8% Similarity=-0.120 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCcHHHHHHHHHHcHh
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLA-ILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...++.+++..++..|.- ++|+..-... -...+...|++++|.++++.+..
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 357899999999999988 6776652222 23346789999999999999975
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.62 E-value=18 Score=33.84 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHhhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETP------DFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
....+|..++..+.+.|+++.|...+.++.... .+......+......|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334577888888889999999988888876421 455556666778888999999998888887
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.03 E-value=0.43 Score=26.63 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhccCChHHH
Q 010031 433 VKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A 452 (520)
...|+.+..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555444
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.00 E-value=29 Score=35.52 Aligned_cols=205 Identities=10% Similarity=-0.047 Sum_probs=103.1
Q ss_pred hCCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 273 QNGEAEKALAMFFQMLDAG-VRANDF--TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
...+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3445678888888765443 222221 22223222233322455555555433221 244444444555557888888
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH--HHcH
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF--DSMR 424 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~ 424 (520)
+...+..|.. ....-..-+..++...|+.++|..+|+++.. ..+ .|..|.. .+.|..-. ...- ..-.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCC-CCCCCCCchh
Confidence 8888888764 1223344566776778888888888888743 112 2222221 11221100 0000 0000
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.. +.... --.-+..+...|+...|...+..+....+......+.......|..+.++....+.
T Consensus 403 ~~--~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SA--LTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh--hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 00000 01233445566777777777766555455555555555566677777776665543
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=11 Score=36.96 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=78.9
Q ss_pred HhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
.-.|+++.|..++..+.++ ..+.++..+-+.|-.++|+++ .+|+..- .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 3456666666666555532 233444555556655555443 2222111 122345666666666554
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 400 (520)
+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 662 e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N---- 725 (794)
T KOG0276|consen 662 EA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N---- 725 (794)
T ss_pred hh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c----
Confidence 32 2445566677777777777777766655442 444555555556655444444444444321 1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHc
Q 010031 401 LAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
....++...|+++++.+++.+-
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHhc
Confidence 1222345567777766666554
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.85 E-value=0.36 Score=39.50 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=59.3
Q ss_pred HHHhccCChHHHHHHHhhCCC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TP-----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.-+.+.|++++|..-|..+.. ++ ....|..-..++.+.+.++.|+.-..++++++|.+..++...+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 445688999999988887654 21 22345555667889999999999999999999999999999999998775
Q ss_pred C
Q 010031 514 D 514 (520)
Q Consensus 514 ~ 514 (520)
.
T Consensus 183 k 183 (271)
T KOG4234|consen 183 K 183 (271)
T ss_pred h
Confidence 4
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.70 E-value=4.4 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.-++.+-++.+....+-|++......+++|.+.+|+..|.++++.++.+.+ .+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777889999999999999999999999999998875443 24445655543
No 330
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.68 E-value=0.7 Score=25.09 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
|+.+.|..+|++++...|.++..|...+.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5788999999999999999998887766543
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.66 E-value=29 Score=34.96 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHH----HH-HHhcCChhHHHHHhccCCC-------CCCCCCchhHHHHHHHHHhc
Q 010031 145 LSLGRGLHCLIVKSGVEYDAFVRVHLA----DM-YVQLGKTRGAFKVFDETPE-------KNKSESVLLWNVLINGCSKI 212 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 212 (520)
...+...++...+.|. ......+. .+ +....|++.|+..|+...+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567888888877763 22222222 22 4467789999999988765 44 445666777777764
Q ss_pred C-----ChhHHHHHHhhCCC---CCHHHHHHHHHHHHh-cCCHHHHHHHHhcCCCCC-cccHHHHHHHHH----hCCChh
Q 010031 213 G-----YLRKAVELFGMMPK---KNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKG-VVSWTAMINGFS----QNGEAE 278 (520)
Q Consensus 213 g-----~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~ 278 (520)
. +.+.|+.++....+ |+.......+..... ..+...|.++|......+ +.++-.+..+|. ...+..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 3 56678888877665 333333322222222 245678888888877655 333333333332 223567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCC
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (520)
.|..++++.-+.| .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7888888888777 4433333333334444 666666666665555543
No 332
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.53 E-value=7.4 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
..+...|++++|..+.+....||...|.+|-. -+.|..+++..-+.+|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34455666666666666666666666655432 34555555555565666555 4444443
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=31 Score=35.17 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=61.8
Q ss_pred HHHHHhCCChhHHHHHHHHhhhCCCCCC---cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 101 IRGLAENSHFQSCISHFVFMLRLSVRPN---RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 101 i~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
+..+.+.+.+++|++.-+.-.. ..|. .......|..+...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 5567778888888887765543 3332 23455566777777888888777766654 3555566566666665
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (520)
++.... +.-+.......+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 555443 3333333223456677777776666
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.33 E-value=5.3 Score=35.44 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
++..++..+...|+.+.+.+.++++...+ ...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44555555666666666666555554432 34566666666666666666666555543
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=6.8 Score=38.26 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=83.4
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 254 (520)
.-.|+++.|..++-.+. ....+.++..+.+.|..++|+++-. |... -.....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHH
Confidence 34566666655544433 1233445555566666666655421 2111 1122345677777766654
Q ss_pred cCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH
Q 010031 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334 (520)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (520)
+.. +..-|..|.++..+.|++..|.+.|....+ +..|+-.+...|+-+....+-....+.|. .
T Consensus 662 e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~----- 724 (794)
T KOG0276|consen 662 EAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N----- 724 (794)
T ss_pred hhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----
Confidence 432 345577777777777777777777766543 23444455556666555555555555543 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
|.-..+|...|+++++.+++.+-.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 2223345667777777777765543
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.20 E-value=1.6 Score=35.45 Aligned_cols=25 Identities=8% Similarity=-0.173 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+++|...|+++...+|+|......|
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3445555555555556555444443
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.69 E-value=0.6 Score=41.66 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+-|.++|++++|+..+.+... .| +++++..-..+|.+...+..|+.-.+.++.++-....+|...+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999988554 56 888888889999999999999999999999888777777777776666655
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.38 E-value=9.5 Score=34.25 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLL 443 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 443 (520)
|.-+-.+.|+..+|.+.++.+.+. .|-.. .-..|+.+|....-+.+...++.+.- +-..+.+. ..|.+- +
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dislPkSA~icYTaA---L 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISLPKSAAICYTAA---L 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCcchHHHHHHHH---H
Confidence 333444566777777777666553 22111 33455666665555555555544432 11122221 122211 1
Q ss_pred hccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
. ++..+-++. .|+..+-..+-.+ --.|.+.+.++++.+|.-|..+..+-.
T Consensus 355 L------K~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 355 L------KTRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred H------HHHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 1 122222222 2333322222211 134788999999999998887665543
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.75 E-value=40 Score=34.46 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCCCC---CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 010031 171 ADMYVQLGKTRGAFKVFDETPEKNKSE---SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247 (520)
Q Consensus 171 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 247 (520)
++.+.+.+.+++|+++.+..... .| ....+...+..+...|++++|-...-.|...+..-|..-+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666777777766655433 22 23345556666666777777777666666666666655555555555544
Q ss_pred HHHHHHhcCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 248 KAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 248 ~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
....++-.-.. -+...|..++..+.. .+.. -|.+.... -+++...-..++++.. .+..+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~~------------~q~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISATE------------PQIKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhcc------------hHHHhh-
Confidence 43332222111 123455555555544 1111 11122111 1122111111111110 001100
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 010031 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362 (520)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (520)
.-+...-..|+..|...++++.|...+-.+..+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11112233477788888888888888877776543
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.62 E-value=1.3 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
No 341
>PRK10941 hypothetical protein; Provisional
Probab=86.60 E-value=2.5 Score=37.50 Aligned_cols=71 Identities=11% Similarity=-0.102 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.+.+-.+|.+.++++.|+++.+.+.. +.++.-+.--...|.+.|.+..|..-++..++..|++|.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34566677788888888888887654 345666776777788888888888888888888888877655433
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.49 E-value=19 Score=30.49 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVV 439 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 439 (520)
.+.-++.+.+.+..++++...++-++. +|... .-..++..++-.|++++|..-++-..+ +.|+ ..+|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 445567778889999999998887774 55444 667788889999999999988877653 2443 4556665
Q ss_pred HHHHhccCChHHHH-HHHhhCCCC----CCHHHHHHHH-HH--HHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 440 VNLLSRVGQVDKAL-NFINKMPET----PDFVIWGALF-CA--CRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 440 ~~~~~~~g~~~~A~-~~~~~~~~~----~~~~~~~~l~-~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+.+ +.+. ++|.--..+ .....|...+ .+ +...|..+.+..+-+.+++..|..+..
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 543 2222 233322111 1233454444 33 333445555677777788877765554
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.99 E-value=20 Score=30.31 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIW--GLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTA 406 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~ 406 (520)
+.+||.+.-.+...|+++.|.+.|+...+-|+ .-|..+-+ ++.-.|++.-|.+-+...-+... .|-...|..+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 45667676667777777777777777666332 12222211 22335677777666655554321 122223333222
Q ss_pred HHccCcHHHHHHHHH-HcHhhcCCCCChhHHHH-HHHHHhccCChHHHHHHHhhCCCC------CCHHHHHHHHHHHHHc
Q 010031 407 CWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTV-VVNLLSRVGQVDKALNFINKMPET------PDFVIWGALFCACRTH 478 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~ 478 (520)
..-++.+|..-+. +.. ..|..-|.. ++..|.-.=..+.+.+-....... --..||..+..-+...
T Consensus 178 --~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --hhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455544333 222 122222222 222222111122222222221110 1123566666667778
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 010031 479 KDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p 496 (520)
|+.++|..+|+-++..+-
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 888888888877766443
No 344
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=51 Score=34.80 Aligned_cols=28 Identities=11% Similarity=0.136 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
.-|..|+..|...|+.++|+++|.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3488899999999999999999999876
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.75 E-value=45 Score=34.15 Aligned_cols=162 Identities=10% Similarity=0.090 Sum_probs=80.5
Q ss_pred HHHHHHHHHHh-cCCChHHHHHHhcccCC----CCcc-----hHHHHHHHHHhCCChhHHHHHHHHhhhCCCC----CCc
Q 010031 64 RITTQLISSAS-LHKSIDYALSIFDHFTP----KNLH-----IFNVLIRGLAENSHFQSCISHFVFMLRLSVR----PNR 129 (520)
Q Consensus 64 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~ 129 (520)
.++-.+...+. ...+++.|...+++... ++.. +...++..+.+.+... |...+++..+.--. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44445555555 56788888887775421 1111 2223455555555444 77777776653111 111
Q ss_pred ccHHHH-HHHHhccCChhhHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCChhHHHHHhccCCCC---------C
Q 010031 130 LTYPFV-SKSVASLSLLSLGRGLHCLIVKSG---VEYDAFVRVHLADMYV--QLGKTRGAFKVFDETPEK---------N 194 (520)
Q Consensus 130 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~---------~ 194 (520)
..|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++... .
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 122222 112222367777888777776543 2233334444444433 345455555555444211 1
Q ss_pred CCCCchhHHHHHHHH--HhcCChhHHHHHHhhCC
Q 010031 195 KSESVLLWNVLINGC--SKIGYLRKAVELFGMMP 226 (520)
Q Consensus 195 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 226 (520)
..|...+|..+++.+ ...|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455666666544 34666666666655544
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.45 E-value=36 Score=32.80 Aligned_cols=390 Identities=10% Similarity=0.089 Sum_probs=195.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC-CCCCcccHHHHHH-HHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK-SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.|+..|...+..+.+.+.+.+.-.+|.+|.... -.|| .|..... -|....+++.|+.+|...++.+. .++..|-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~np-dsp~Lw~e 179 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFNP-DSPKLWKE 179 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcCC-CChHHHHH
Confidence 488999999998888888999999999999842 2333 3332222 23344459999999998888652 23333322
Q ss_pred HHHH---HHh------------cCCh----hHHHHHhccC-CC----CCCCCCchhHHHHHHHHHhcCCh----------
Q 010031 170 LADM---YVQ------------LGKT----RGAFKVFDET-PE----KNKSESVLLWNVLINGCSKIGYL---------- 215 (520)
Q Consensus 170 l~~~---~~~------------~g~~----~~a~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~g~~---------- 215 (520)
..+. |.. .++. +.....+... .. .+..+... .......-..++.
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d~~kel~k~i~d~~~~ 257 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--LSVAEKFDFLKELQKNIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 110 0011 0000000000 00 00001110 0000000000000
Q ss_pred ----------hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CcccHHHHHHHHHh------CCCh
Q 010031 216 ----------RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK--GVVSWTAMINGFSQ------NGEA 277 (520)
Q Consensus 216 ----------~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~------~~~~ 277 (520)
+.|.+.++-..+.+...+...-....-..+.+....+|++..++ ....|+..|..|.. ....
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I 337 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRI 337 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 11111111111111111222222222223344455666665543 22345555554432 2234
Q ss_pred hHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhhccCChH-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHH-HH
Q 010031 278 EKALAMFFQMLDAG-VRA-NDFTVVSALSACAKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAA-SL 352 (520)
Q Consensus 278 ~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~ 352 (520)
.....+++.....+ ..+ ....|..+.-.++...... .|..+. ..++..+...|..-+...... .+++-. .+
T Consensus 338 ~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 338 LHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 45556666655432 333 3345555555555544332 233332 223344555555444444422 122211 12
Q ss_pred HHhcCCC----CChhHHHHHHHHHHHcCC-HHHH--HHHHHHHHHCCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 353 VFGETKE----KDLLTWTAMIWGLAIHGR-YEQA--IQYFKKMMYSGTEPDGTVF-LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 353 ~~~~~~~----~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
.+..+.+ +....|+... .|+ .+.. ..++...... ..|+..++ +.++.-+...|-+.+|...+..+.
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2222222 3334555544 222 2211 1233333333 35566543 566777888999999999999987
Q ss_pred hhcCCCCChhHHHHHHHHH---hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCC
Q 010031 425 FDYFIEPSVKHHTVVVNLL---SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS-LNLSI 498 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~ 498 (520)
.. -+|+...|..++..- ..+| ..-+.++++.+.. -.|+..|...+.--...|..+.+-.++.++.+ ++|..
T Consensus 488 ~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 488 EL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred hC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 52 256777887777543 2344 7778888888765 36888999888887899999999999988886 56654
Q ss_pred c
Q 010031 499 P 499 (520)
Q Consensus 499 ~ 499 (520)
.
T Consensus 565 ~ 565 (568)
T KOG2396|consen 565 A 565 (568)
T ss_pred h
Confidence 4
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.29 E-value=8.1 Score=36.59 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=81.5
Q ss_pred HHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 373 AIHGRYEQAI-QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 373 ~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
...|+...|- +++.-++...-.|+.......| ....|+++.+...+..... -+.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666554 4555555544456655444333 4578899998888887753 234555677788888889999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 452 ALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
|...-+.|... .++.............|-++++...|++.+.++|.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 98888877641 33444444444566778889999999999888764
No 348
>PRK10941 hypothetical protein; Provisional
Probab=85.23 E-value=2.2 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+.+-.+|.+.++++.|..+.+.++.+.|++|.-+...|.+|.+.|-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~ 232 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH 232 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 4556677999999999999999999999999999999999999988754
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.14 E-value=2.6 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666543
No 350
>PRK12798 chemotaxis protein; Reviewed
Probab=84.98 E-value=35 Score=32.19 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=105.1
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHH
Q 010031 344 CGNIEAASLVFGETKE----KDLLTWTAMIWG-LAIHGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVK 414 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~ 414 (520)
.|+.+++.+.+..+.. +....+-.|+.+ .....++..|+.+|+..+- .-|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888887765 244556666655 3456788999999998765 345432 4444455667889998
Q ss_pred HHHHHHHHcHhhcCCCCChhHHH-HHHHHHhccC---ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHT-VVVNLLSRVG---QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
+...+-......+...|-..-|. .+..++.+.+ +.+.-..++..|...-....|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88887777665554445443332 3333444433 3444555555555333355788888888899999999999999
Q ss_pred HhcCCCCCcchhHHHHhhhh
Q 010031 491 SCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 491 ~~~~~p~~~~~~~~l~~~~~ 510 (520)
++.+.+ ....-...+.+|.
T Consensus 283 A~~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYR 301 (421)
T ss_pred HHHhcc-CCCcchHHHHHHH
Confidence 988763 3344444444443
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.59 E-value=2.1 Score=41.42 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=76.3
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..|+...|...+...........++ ..-.|...+.+.|-..+|..++..... ...+.++..+.+++....+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 4688899999888876433222233 334577777888888888888876543 3456677888899999999999999
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhh
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
.++.+++++|+++.+-..|..+-.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998777655543
No 352
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.07 E-value=19 Score=36.34 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=96.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----------HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----------TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
+...++-.|....+++..+++.+.++. .||.. .|...+.--.+-|+-++|....-.+.+..-...+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445566667777778888888777765 23321 12222333334567777777766665543333332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHc
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV---FLAILTACWY 409 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 409 (520)
.| |-+|++ |++|- +-+.|...+..+.|.+.|++..+ +.|+..+ +..|+.+
T Consensus 280 m~-------Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 MY-------CLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred ee-------eeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 22 223321 11111 11223445566778888888777 6776552 3333332
Q ss_pred cCc-HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 410 SGQ-VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 410 ~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
.|. ++...++-.- =..|-..+.+.|.++.-.++|+-. ..+.+-.-.+|+.+|.+..
T Consensus 333 aG~~Fens~Elq~I-------------gmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLELQQI-------------GMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHHHHH-------------HHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 222 2222221110 012333455667666666665532 1333334456777777777
Q ss_pred HHHhcCCCCCcchhHHHH
Q 010031 489 QSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 489 ~~~~~~~p~~~~~~~~l~ 506 (520)
+.+++++|...-.-..+.
T Consensus 390 e~mfKLk~P~WYLkS~me 407 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTME 407 (1226)
T ss_pred HHHhccCCceehHHHHHH
Confidence 777777765544443333
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.93 E-value=11 Score=31.44 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
+.|.+.|-++...+..-++.....+...|. ..+.+++..++....+. +-.+++..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666654444444444443333 55667777776666542 22566777777777777777776663
No 354
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.91 E-value=6.6 Score=35.01 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
++++++.++..=+.-|+-||..++..++..+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666555544
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.75 E-value=2 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=7.6
Q ss_pred HHHHHhccCChHHHHHHH
Q 010031 439 VVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~ 456 (520)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444433
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.62 E-value=8.6 Score=27.55 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
++.+-+..+....+.|++......+++|.+.+++..|.++++-+..+- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455556666666788888888888888888888888888888776332 123445555443
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.35 E-value=34 Score=30.01 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=64.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccCChHHHHHHHHHHHHc---CC--CCChhHHHHHHHHHHhc
Q 010031 273 QNGEAEKALAMFFQMLDAGVRAND---FTVVSALSACAKVGALEAGVRVHNYISCN---DF--GLKGAIGTALVDMYAKC 344 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 344 (520)
+..++++|+.-|++.++....-.. .....++....+.+++++....+.++... .+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344688888888888775322223 34455677788888888888888776431 11 12334455566555555
Q ss_pred CCHHHHHHHHhcCCC-----CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 345 GNIEAASLVFGETKE-----KDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.+.+--.++++.-.. +|.. +-.-|...|...+.+....++++++..
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 555444444432221 1111 223445555555555555555555544
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.88 E-value=7.3 Score=28.23 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=25.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 010031 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158 (520)
Q Consensus 113 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 158 (520)
...-++.+...++.|++......+++|.+.+++..|.++++.++..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444555556666666666666666666666666666665543
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.86 E-value=28 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhhccCChHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV-------SALSACAKVGALEAGVR 317 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~~~~~~a~~ 317 (520)
.+.+-..+.+++++|+..+.+++..|+..+..+.+ .+...|...|+.....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556677788888888888888888777765543 34444555555444333
No 360
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.74 E-value=27 Score=33.07 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHcHh
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACW--YSGQVKLALNFFDSMRF 425 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 425 (520)
.+...+++..|.++++.+... +.++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677888888888887775 444443 4445555443 45667778877777653
No 361
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.59 E-value=4.7 Score=32.79 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..|.+.|.+++|.+++++..+ +|++...-..|..+..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 345566666666666666655 55555554444444443
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.53 E-value=47 Score=31.20 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccCChHHHHHHHHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYIS 323 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 323 (520)
.+..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.++++-..++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44566777777778777777777654446666666666654 5566665555555443
No 363
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.20 E-value=7.3 Score=30.57 Aligned_cols=63 Identities=13% Similarity=-0.060 Sum_probs=48.0
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+.|.++.+-|- ...............|++.-|.++.+.++..+|+|..+....+.++.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777765 334444555667789999999999999999999999999999999998876
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.79 E-value=6.2 Score=22.35 Aligned_cols=32 Identities=16% Similarity=-0.030 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHhcCCCCC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQ--SSCSLNLSI 498 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~ 498 (520)
.|..+...+...|++++|+.+++ -+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35566677888999999999944 777777654
No 365
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.45 E-value=3.6 Score=34.83 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=46.9
Q ss_pred HHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 442 LLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
...+.|+.+.|.+++.+... -| ....|.-+...-.+.|+.+.|.+.|++.++++|++-..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 34567888888888888765 23 45678888888888999999999999999998876543
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.31 E-value=35 Score=28.38 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=44.2
Q ss_pred HhhccCChHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--HHHHHHHHHHcCCHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 380 (520)
.+...++++.|...++.....-.. ....+--.|.......|.+|+|...++....++-.. ...-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 345556666666666554422100 011111233444555666666666666655553322 3333455666666666
Q ss_pred HHHHHHHHHHCC
Q 010031 381 AIQYFKKMMYSG 392 (520)
Q Consensus 381 a~~~~~~~~~~~ 392 (520)
|..-|++..+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 666666666543
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.09 E-value=6.3 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 462 TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 462 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 68888888888899999999999999999998888
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.39 E-value=26 Score=29.33 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCCCCCchhHHHHHHHHHhcCChhHHH
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE---KNKSESVLLWNVLINGCSKIGYLRKAV 219 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (520)
+.|.+.|-.+...+.-.++.....|...|. ..+.+++..++.+..+ .+-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566667767766665556666666666665 5667777777665543 233567778888888888888887764
No 369
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.33 E-value=40 Score=30.70 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc------cCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCCh
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY------SGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQV 449 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 449 (520)
-++++..++.+....+. |........|.++.. .-+|.....+|+.+.. +.|++. +.|. .-+..+..-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhhhH
Confidence 35778888888887764 788877777766532 2367778888888764 356654 3443 3334455557
Q ss_pred HHHHHHHhhCCCCCCH---HHH-HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 450 DKALNFINKMPETPDF---VIW-GALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 450 ~~A~~~~~~~~~~~~~---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
+.++..++.+...|.. ..| ..-...+.+.|+.++|...|++++.+.++.....+....
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 7788888887765322 222 333445889999999999999999999887766554443
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.11 E-value=6.6 Score=23.49 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=15.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666653
No 371
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.50 E-value=3.2 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=10.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
..++.+.|++++|...|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 372
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.43 E-value=64 Score=30.33 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCcHHHHHHHHHHcH
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-WYSGQVKLALNFFDSMR 424 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 424 (520)
+..+.+.|.+..|.++.+-+......-|+......|..| .++++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 455667777777777777777643322344444445544 35666666666666544
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.30 E-value=19 Score=25.27 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHH
Q 010031 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114 (520)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 114 (520)
+..+++...+.|+- +......+-..-...|+.+.|.++++.++ +.+..|..++.++...|.-+-|-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45678888888853 33444444444446788999999999998 88888999999988887765553
No 374
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.27 E-value=72 Score=30.79 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCCCCc----------ccHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-------HHHHHHHHH-h
Q 010031 246 LKKAGELFEQMPEKGV----------VSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAND-------FTVVSALSA-C 306 (520)
Q Consensus 246 ~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~l~~~-~ 306 (520)
.|+++...++.++.|. .+...++.+-.-.|++.+|++-...|.+.- -.|.+ .....++.. |
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4555555566655441 123333444456789999999888887642 12331 112233333 3
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH--------HHHH--HHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTA--------MIWG--LAI 374 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------l~~~--~~~ 374 (520)
+..+.++.|+..|....+.-...|...+ ..+.-.|.+.|+.+.-.++++.+..+|..++.. ++.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4667889998888877654333333332 345667888999988888888887764433221 1122 235
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHccCcHHHHHHHHHHc
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVF--------LAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
.+++.+|...+.+-.+-. +..-+ ..|-..+...|+..++.+...-.
T Consensus 458 qn~lnEaK~~l~e~Lkma---naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMA---NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred hccHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 788999988888876521 22222 12222344566666666655443
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.01 E-value=7.1 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=15.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~ 291 (520)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666443
No 376
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.92 E-value=1.2e+02 Score=32.82 Aligned_cols=256 Identities=14% Similarity=0.030 Sum_probs=138.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHhcCCCCCcccHHHHHHHHHhCCC
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL-KKAGELFEQMPEKGVVSWTAMINGFSQNGE 276 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (520)
++..-...+..+.+.+..+....+...+..++...-...+.++.+.+.. .....+...+..+|...-...+..+...+.
T Consensus 634 d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~ 713 (897)
T PRK13800 634 DPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRA 713 (897)
T ss_pred CHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 4444444445555555433333333333335555555555555443221 111122222333454444445555554432
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHh
Q 010031 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA-ASLVFG 355 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~ 355 (520)
.+ .. .+-.++. .+|...-...+.++.+.+..+. +.... ..++..+-...+.++...+..+. +...+.
T Consensus 714 ~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~ 781 (897)
T PRK13800 714 GD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVR 781 (897)
T ss_pred CC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHH
Confidence 21 11 2222332 4555555566666666554432 11222 24567777777788877775443 233333
Q ss_pred c-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh
Q 010031 356 E-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 356 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
. +..++...-...+.++...|..+.+...+..+.+ .++...-...+.++...+.. ++...+..+.. .|+..
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~----D~~~~ 853 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT----DPHLD 853 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc----CCCHH
Confidence 3 4457888888888999988887665555555554 45665666667777777653 45566655553 56776
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFC 473 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 473 (520)
+-...+.++.+.+....+...+..+..++|...-.....
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 767777888776444567777776665666654444333
No 377
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.85 E-value=59 Score=29.08 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=65.3
Q ss_pred ChHHHHHHhcccCC-----CCcchHHHHHHHHHh-CC-ChhHHHHHHHHhhh-CCCCCCcccHHHHHHHHhccCChhhHH
Q 010031 78 SIDYALSIFDHFTP-----KNLHIFNVLIRGLAE-NS-HFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGR 149 (520)
Q Consensus 78 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~~-~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~ 149 (520)
-+-+|+++|+.... .|...-..+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++....
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 244445555555544 11 22222333333332 234466666777777777777777777
Q ss_pred HHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhHHHHHhcc
Q 010031 150 GLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 189 (520)
++++..... +...|...|..+|+.-...||..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766654 4556777777777777777777777776654
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.76 E-value=41 Score=29.77 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA-- 342 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 342 (520)
=|++++..++|.+++...-+--.. .++| ......|-.|.+.+.+..+.++-..-.+..-.-+..-|..+++.|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 357788888888877665443322 2333 3444455567888888888877777665433344445666666554
Q ss_pred ---hcCCHHHHHHHH
Q 010031 343 ---KCGNIEAASLVF 354 (520)
Q Consensus 343 ---~~~~~~~a~~~~ 354 (520)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 357777777665
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.52 E-value=26 Score=30.12 Aligned_cols=117 Identities=6% Similarity=-0.062 Sum_probs=69.2
Q ss_pred HHhcCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCcHHHH
Q 010031 341 YAKCGNIEAASLVFGETKE--KDL-LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLA 416 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a 416 (520)
|....+++.|...+.+... |+. .-|+.-+-++.+.++++.+..--.+.++ +.||.+- -..+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4455667777777765543 554 3456667777778888888777777776 6777773 33344455667778888
Q ss_pred HHHHHHcHh---hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 417 LNFFDSMRF---DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 417 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
+..+++... ...+++-..+...|..+--..=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888777632 2233344445555554433333334444444443
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.68 E-value=11 Score=25.86 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~ 418 (520)
.+.++|+..++...+.-..|... ++..++.+++..|++.++++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444432222111 44444455555555544443
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.40 E-value=48 Score=29.38 Aligned_cols=83 Identities=5% Similarity=-0.064 Sum_probs=42.6
Q ss_pred HHHHHhcCCHHHHHHH----HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----
Q 010031 338 VDMYAKCGNIEAASLV----FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW----- 408 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 408 (520)
|+++...+++.++... |+.-.+-.......-|-.|.+.|.+..+.++-..-....-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666776666433 2222222333444445556666776666666665554211112223554444433
Q ss_pred ccCcHHHHHHHH
Q 010031 409 YSGQVKLALNFF 420 (520)
Q Consensus 409 ~~g~~~~a~~~~ 420 (520)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356777776665
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.17 E-value=2.1 Score=29.19 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=36.9
Q ss_pred HHHHhccCChHHHHHHHhhCCC----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE----TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+..| ...+.++|+..|++... +|+ ..++..++.++...|++++.+...-+=+++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 67778888888887654 122 236677778888888888887776655443
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.98 E-value=1.2e+02 Score=31.04 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=80.0
Q ss_pred CcchHHHHHHHHH-hCCChhHHHHHHHHhhhCCCCCCcc-----cHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CC-
Q 010031 93 NLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRL-----TYPFVSKSVASLSLLSLGRGLHCLIVKSGVE--YD- 163 (520)
Q Consensus 93 ~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~- 163 (520)
...++-.+...+. ...+++.|...+++.....-+++.. .-..+++.+.+.+... |...++..++.--. .+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3445666666666 5678888888888765432223222 1223444555554444 77777776654211 11
Q ss_pred -hhHHHHH-HHHHHhcCChhHHHHHhccCCCCC---CCCCchhHHHHHHHHH--hcCChhHHHHHHhhCCC---------
Q 010031 164 -AFVRVHL-ADMYVQLGKTRGAFKVFDETPEKN---KSESVLLWNVLINGCS--KIGYLRKAVELFGMMPK--------- 227 (520)
Q Consensus 164 -~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~--------- 227 (520)
...+..+ +..+...++...|.+.++.+.... ..|....+..++.+.. +.+..+++.+.++++..
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 1222322 223333467887887777665421 1333334444444433 33444555555444311
Q ss_pred ----CCHHHHHHHHHHH--HhcCCHHHHHHHHhcC
Q 010031 228 ----KNVASWVSLIDGF--MRKGDLKKAGELFEQM 256 (520)
Q Consensus 228 ----~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 256 (520)
|...+|..+++.+ ...|+++.+...++++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2334444444433 3455555555554443
No 384
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.58 E-value=8.1 Score=36.69 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVF-LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...+.++.|..++.++++ +.||...| ..-..++.+.+++..|+.=..++.
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 344455555555555555 45544422 222244555555555554444443
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.43 E-value=28 Score=27.43 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHHHhhhCCCCCCcccHH
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTP---------KNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNRLTYP 133 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~ 133 (520)
...+.++.-....+++...+.+++.+.. .+...|+.++.+...... --.+..+|..|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4455666666667777777777766532 355677788877765554 335667777777767777777777
Q ss_pred HHHHHHhcc
Q 010031 134 FVSKSVASL 142 (520)
Q Consensus 134 ~ll~~~~~~ 142 (520)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 777776654
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.97 E-value=22 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=10.4
Q ss_pred HHhccCChHHHHHHHhhCCCCC
Q 010031 442 LLSRVGQVDKALNFINKMPETP 463 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~ 463 (520)
.|.+.|.+++|.+++++....|
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~ 141 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDP 141 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCC
Confidence 3445555555555555443333
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.89 E-value=38 Score=24.64 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 010031 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123 (520)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 123 (520)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-.+.. .+.|-.+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666666655422 22222222344667888888888888887788888876655 3455556666666666655
Q ss_pred C
Q 010031 124 S 124 (520)
Q Consensus 124 ~ 124 (520)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 388
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.68 E-value=96 Score=29.22 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGT--------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNL 442 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 442 (520)
.+++.+|..+-+.....-..-|.. +|-.+-.++...|+...-..++........+..| ....|.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 466666666665544321222222 2333334455567766666666555443333433 3456777888
Q ss_pred HhccCChHHHHHHHhhCCCCCCHH---HH----HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 443 LSRVGQVDKALNFINKMPETPDFV---IW----GALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~---~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
|...+-++.|.++..+..- |+.. -| ..+.....-.+++..|.+.+-.++...|++.
T Consensus 219 yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 8888889999998888764 1111 11 1222335568889999999999988888744
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.63 E-value=18 Score=30.57 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=51.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDFVIWGALFCA 474 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~ 474 (520)
...-++.+.+.+.+++++...+.-.+.. +.+...-..++..|+-.|++++|..-++-.-. .+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445667778889999998887766432 33455666788999999999999877765433 2445667777755
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.31 E-value=1.5e+02 Score=31.47 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCC
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTP 91 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 91 (520)
.-|..|+..|...|..++|+++|.....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 4567899999999999999999987765
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.76 E-value=27 Score=26.54 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
..+-+..+..-.+-|++.....-+++|.+.+|+..|.++|+-++.+.| +.-.+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 344455555666888888888889999999999999999988875433 3333454443
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.73 E-value=36 Score=23.98 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (520)
..|+.+.|.+++..+. .....|..++.++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3455555555555555 555555555555555554433
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.56 E-value=1.5e+02 Score=31.13 Aligned_cols=220 Identities=13% Similarity=0.006 Sum_probs=117.7
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChh-------HHHHHH-HHHHhcCChhHHHHHhccCC----CCCCCCCchhHHHHHH
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAF-------VRVHLA-DMYVQLGKTRGAFKVFDETP----EKNKSESVLLWNVLIN 207 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 207 (520)
....++++|..++.++...-..|+.. .++.|- ......|+++.|.++.+... +.-..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988887653333322 333332 23445788888877765443 3333445666677777
Q ss_pred HHHhcCChhHHHHHHhhCCC----CCHHHHH---HHH--HHHHhcCCH--HHHHHHHhcCCC-----CC-----cccHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPK----KNVASWV---SLI--DGFMRKGDL--KKAGELFEQMPE-----KG-----VVSWTA 266 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~---~l~--~~~~~~~~~--~~a~~~~~~~~~-----~~-----~~~~~~ 266 (520)
+..-.|++++|..+..+..+ -++..+. .+. ..+...|+. .+....|..... .. +.++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999988877765 2443332 221 234455632 222223322221 11 123444
Q ss_pred HHHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH----HHHHH
Q 010031 267 MINGFSQN-GEAEKALAMFFQMLDAGVRANDFTVV--SALSACAKVGALEAGVRVHNYISCNDFGLKGAIG----TALVD 339 (520)
Q Consensus 267 l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~ 339 (520)
+..++.+. +...++..-++-.......|-..... .++......|+.++|...+.++......++..++ ...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 11222222222222222223222222 5677788899999999998888765433322221 12222
Q ss_pred --HHHhcCCHHHHHHHHhcCCC
Q 010031 340 --MYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 340 --~~~~~~~~~~a~~~~~~~~~ 359 (520)
.....|+.+.+.....+-..
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhcccCCHHHHHHHHHhccC
Confidence 23456777777776665444
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.52 E-value=16 Score=30.70 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=14.7
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.|++.+|..++.++...|+.++|.....++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444555555555555555554444443
No 395
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.20 E-value=6.3 Score=34.93 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred hccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 444 SRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.+.|+.++|..+|+-... .| ++.....+..-....++.-+|-++|-+++.+.|.+..++....
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 467788888888876543 23 3444445554455567777888888888888888777776544
No 396
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=68.80 E-value=8 Score=34.44 Aligned_cols=76 Identities=7% Similarity=-0.011 Sum_probs=46.8
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGA-LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
+.-|+..|...+.--.+.|.+.+...++.+... +.|...|-. ...-+...++++.+..++.+.+.++|++|..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344555555555544455666666666666443 234555544 2233566778888888888888888888877643
No 397
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=68.38 E-value=7.7 Score=34.01 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=22.5
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+.+.++++.|....++.+.++|++|..+...|.+|.+.|.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c 230 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC 230 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC
Confidence 4555555555555555555555555555555555555554
No 398
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.36 E-value=1.3e+02 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHcH
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMR 424 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 424 (520)
++.+.+.|-+..|.++.+-+.+....-|+.....+|..|+ ++.++.-.+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344556666666666666665322223445555555443 4556666666655553
No 399
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.20 E-value=21 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-----------cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSG-----------QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
+++|+.-|++.+. +.|+.. ++..+..++...+ .+++|.+.|++... ..|+..+|+.-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 3445555555555 566654 5555555554432 23444444444442 356666666555544
No 400
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.97 E-value=73 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACR---------THKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
..|......+. ..++...|..+++++++++|+-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 34555555553 3457789999999999999863
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.94 E-value=41 Score=31.94 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPE-----------KGVVSWTAMINGFSQNGEAEKALAMFFQML 288 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 288 (520)
+...|++.++-.||+..|+++++.+.- -.+.++.-+.-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888877642 124567778888999999999999988865
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.84 E-value=96 Score=30.04 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=28.5
Q ss_pred hCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 106 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
.++.++..++++..+...|..-....++.....|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35677888888888877776666666777777776666543
No 403
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.56 E-value=45 Score=28.88 Aligned_cols=70 Identities=14% Similarity=0.011 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+.....++...|++-++++-..++.. +.+...|.--..+....=+.++|..-+.++++++|.-.++...-
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 44455666777888888877777654 23444555555555556677888888888888888766555443
No 404
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.32 E-value=13 Score=32.03 Aligned_cols=72 Identities=10% Similarity=-0.098 Sum_probs=50.3
Q ss_pred HHHHhccCChHHHHHHHhhCC---------CCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 440 VNLLSRVGQVDKALNFINKMP---------ETPDFV-----------IWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
.+-+.+.|++++|..-+.++. ++|... .+..+-.++...|++-++++....++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 344556666666665555432 233332 334445667789999999999999999999999
Q ss_pred chhHHHHhhhhh
Q 010031 500 QAMSYCQTFMQQ 511 (520)
Q Consensus 500 ~~~~~l~~~~~~ 511 (520)
.+++..+.+...
T Consensus 265 KA~frRakAhaa 276 (329)
T KOG0545|consen 265 KAYFRRAKAHAA 276 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999988876543
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=69 Score=27.74 Aligned_cols=118 Identities=11% Similarity=-0.011 Sum_probs=77.8
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChh-HHHHHHHHHHHcCCHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETKE--KDLL-TWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~ 380 (520)
.|.....++.|...|.+.+... |+. ..|+.=+.++.+..+++.+..--....+ ||.+ .-..+..++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3666778889999887777654 555 4455666778888888887766555544 4443 44556677778889999
Q ss_pred HHHHHHHHHH----CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 381 AIQYFKKMMY----SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 381 a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
|+..+++... +.+.|-......|..+--..-.+.+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999998743 3344444466666665545555666666666554
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.70 E-value=1.6e+02 Score=30.26 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---c
Q 010031 337 LVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY---S 410 (520)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~---~ 410 (520)
....+.-.|.++.|.+++-.... .+.+.+...+..+ |-.......-..+.... -.|...-+..||..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 34566678999999999887222 2333333333222 21111111112222210 01112456677776654 5
Q ss_pred CcHHHHHHHHHHcH
Q 010031 411 GQVKLALNFFDSMR 424 (520)
Q Consensus 411 g~~~~a~~~~~~~~ 424 (520)
.+..+|.+++--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888887776
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.68 E-value=21 Score=31.63 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
++.....|..+|.+.+|.++.++... +.+...|..++..+...||--.|...++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555667777888888887777654 345556677777777777766666666655
No 408
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.58 E-value=62 Score=27.72 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=10.1
Q ss_pred HHHHHhccCChHHHHHHHhhCC
Q 010031 439 VVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
++....+.|+.++|.+.|.++.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444455555554444443
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.53 E-value=57 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHH
Q 010031 380 QAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
.+.++|+.|..+|+--... .|......+...|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666666554433 555555666666666666666654
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.26 E-value=38 Score=24.14 Aligned_cols=49 Identities=16% Similarity=-0.092 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhHHHHhhhhhccC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMSYCQTFMQQKGD 514 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 514 (520)
..-..+...+...|++++|++.+-.+++.+|+. ..+-..+..++...|+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 333444444444555555555554444443322 3333344444444443
No 411
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.48 E-value=9.6 Score=33.86 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=30.4
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
.+.|+.++|..+|+.... +.|+ +.....+....-...+.-+|-.++-+..
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 467788888888887764 2343 3444445444445556666666666654
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.96 E-value=64 Score=25.09 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 394 EPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
.++..+-..+..++.++. ++.+.+.+++.+.++ -.|+ ......|.-++.|.+++++++++++.+.+ +||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 445555555666666544 455566677776631 1232 22333455667777777777777776554 3443
No 413
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.73 E-value=1.4e+02 Score=28.95 Aligned_cols=174 Identities=14% Similarity=0.003 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHhcCCC-----CC--hh------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE-----KD--LL------TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTA 406 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~-----~~--~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~ 406 (520)
.-.|++.+|++-...|.+ |. .. .-..+...+...+.++.|+.-|....+.--..|.. .-..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 345777777766665553 22 11 11222333456688888988888776643233333 22344556
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChh-----HHHHHHHHHhccCChHHHHHHHhhCCCCCCHH--------HHHHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVK-----HHTVVVNLLSRVGQVDKALNFINKMPETPDFV--------IWGALFC 473 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~l~~ 473 (520)
|.+.|+-+.-.++++.+...+..+.+.. .+-.-.-.....+++.||..++.+.....+.. ....+..
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 7888888777777777642211111111 11111122246789999999888755311111 1222334
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CCCCcchhH---HHHhhhhhccCC
Q 010031 474 ACRTHKDTKIAKIALQSSCSL---NLSIPQAMS---YCQTFMQQKGDG 515 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~---~l~~~~~~~g~~ 515 (520)
.+...|+..++.+...-++.+ -||-+..+. .+-.+|...|+.
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~ 541 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEK 541 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcc
Confidence 467789999988888877654 455554432 345566676763
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.49 E-value=16 Score=32.37 Aligned_cols=48 Identities=17% Similarity=0.004 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
++.....|..+|.+.+|.++.++++.++|=+.+.+..+-..+...||.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 344556789999999999999999999999999999999999999994
No 415
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.31 E-value=28 Score=21.88 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 402 (520)
+.-++.+.|++++|.+..+.+.+ +.|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 44566777777777777777777 5666554333
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.08 E-value=1.4e+02 Score=28.70 Aligned_cols=198 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCCccc--HHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHhcc
Q 010031 114 ISHFVFMLRLSVRPNRLT--YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF--VRVHLADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 189 (520)
.++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ....-+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHhcCCCCC--cccHH
Q 010031 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--SLIDGFMRKGDLKKAGELFEQMPEKG--VVSWT 265 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 265 (520)
-.... ......-...+...+..|+.+-+..+++.-..++..... +.+...+..|+.+-+.-+++.-...+ ...-.
T Consensus 91 ~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 169 (413)
T PHA02875 91 GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC 169 (413)
T ss_pred CCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHhhccCChHHHHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV---SALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~ 320 (520)
+.+...+..|+ .++.+.+.+.|..|+...-. ..+...+..|+.+-+.-+++
T Consensus 170 TpL~~A~~~g~----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 170 TPLIIAMAKGD----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
No 417
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.00 E-value=2.4 Score=38.13 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF-VIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A 484 (520)
....|.++.|++.+...+... ++....|..-..++.+.++...|++=+....+ .||. ..|-.-..+-+..|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 456789999999998887532 44556777778888999999999998887665 4443 3455555566779999999
Q ss_pred HHHHHHHhcCCC
Q 010031 485 KIALQSSCSLNL 496 (520)
Q Consensus 485 ~~~~~~~~~~~p 496 (520)
...++.+++++-
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.99 E-value=74 Score=25.15 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010031 361 DLLTWTAMIWGLAIHGR-YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 410 (520)
+...|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566777777654443 334566677777767777777777777776554
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.82 E-value=18 Score=27.42 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=16.9
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
+...++.|++.+...-++++.+.+|+..|.++|+-++
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 420
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.75 E-value=1.3e+02 Score=27.71 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc---cCChHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR---VGQVDKAL 453 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 453 (520)
.+.-+.+|+++.+. .|+. .....++..+.+..+.++..+.++++.... +-+...|...+..... .-.++...
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45567788888776 4444 477777888888888888888888887542 3345566665554433 22355555
Q ss_pred HHHhhCCC-------C------CCHH----HHHHHH---HHHHHcCCHHHHHHHHHHHhcCC
Q 010031 454 NFINKMPE-------T------PDFV----IWGALF---CACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 454 ~~~~~~~~-------~------~~~~----~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.+|.+... . +-.. ....++ .-+...|..+.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55554321 1 1111 122222 33567999999999999999864
No 421
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=61.12 E-value=12 Score=20.03 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 484 AKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.++...+++..+|.|.+++.+.-.++.+.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 35677888999999999999998887764
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.87 E-value=52 Score=26.10 Aligned_cols=63 Identities=8% Similarity=-0.076 Sum_probs=40.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010031 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (520)
+.+.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455566776665433 3666777777778888888888887765555544444555655554
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.73 E-value=21 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=17.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444566788888888888888765
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.36 E-value=66 Score=23.92 Aligned_cols=27 Identities=4% Similarity=0.050 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888776
No 425
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.74 E-value=56 Score=32.29 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHh
Q 010031 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (520)
Q Consensus 108 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 187 (520)
|+...|..++.........-.-+....|...+.+.|....|-.++.+..... ...+.++-.+.+++....++++|++.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 4444444444443332111122223333333344444444444444433332 223334444444444444444444444
Q ss_pred ccCCC
Q 010031 188 DETPE 192 (520)
Q Consensus 188 ~~~~~ 192 (520)
+...+
T Consensus 700 ~~a~~ 704 (886)
T KOG4507|consen 700 RQALK 704 (886)
T ss_pred HHHHh
Confidence 44333
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.74 E-value=26 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=14.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
--..++.++...|++++|.++++.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555666666666666655554
No 427
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.55 E-value=76 Score=23.49 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
..++|..|.+.+...+.. ...+.-.-+..+..+|++++|+..=.....||...|-.|.. .+.|-.+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 457777777777777642 22222223344667788888855545555577777765544 456666677666666655
Q ss_pred CC
Q 010031 123 LS 124 (520)
Q Consensus 123 ~~ 124 (520)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.49 E-value=16 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.5
Q ss_pred HhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 105 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
-..|.-..|..+|.+|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999988874 66676543
No 429
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.24 E-value=1.1e+02 Score=26.35 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=54.0
Q ss_pred ccCcHHHHHHHHHHcHhh---cCCCCC--hhHHHHHHHHHhccCChH-------HHHHHHhhCCC---C----CCH-HHH
Q 010031 409 YSGQVKLALNFFDSMRFD---YFIEPS--VKHHTVVVNLLSRVGQVD-------KALNFINKMPE---T----PDF-VIW 468 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~---~----~~~-~~~ 468 (520)
....++.|++.+..+.-. .+-+|. ..++..+.+.|...|+.+ .|.+.|++... . -+. ...
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344555555554443211 122333 345566777777777744 44444444322 1 122 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCC-cchhHHHH
Q 010031 469 GALFCACRTHKDTKIAKIALQSSCSLNLSI-PQAMSYCQ 506 (520)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~ 506 (520)
..+.....+.|+.++|.+.+.+++...-.+ ++.+..++
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 344455889999999999999999754333 34444443
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.15 E-value=17 Score=28.04 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 305 (520)
.....|.-.+|..+|++|++.|-+||. ++.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344556777899999999999999985 4555543
No 431
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.79 E-value=87 Score=23.32 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
-|..++..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888776
No 432
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=54.58 E-value=2.1e+02 Score=27.61 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHH
Q 010031 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233 (520)
Q Consensus 201 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 233 (520)
.......++...+...-...+..-+..++....
T Consensus 102 vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR 134 (410)
T TIGR02270 102 LCAGIQAALGWLGGRQAEPWLEPLLAASEPPGR 134 (410)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCChHHH
Confidence 344444444444444333333333333333333
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=53.26 E-value=98 Score=23.49 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhccCChHHHHHH-------HhhCCC--CCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHhc
Q 010031 434 KHHTVVVNLLSRVGQVDKALNF-------INKMPE--TPDFVIWGALF----CACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~--~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 493 (520)
..+..|..++...|++++++.- |++=-+ ...-..|-..+ .++...|..++|...|+.+-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3455667777788887765443 433211 23344565544 346678999999998888755
No 434
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.49 E-value=44 Score=30.39 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=33.2
Q ss_pred HHHhccCChHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 441 NLLSRVGQVDKALNFINKMPE----TP--DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+-|.+..++..|...|.+-.. .| +.+.|+.-..+-...|++..|+.-..+++.++|.+..++..-+.++.+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 334445555555555544322 11 123344444444445555555555555555555555555444444433
No 435
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.21 E-value=2.1e+02 Score=28.40 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
.+...+.|.+++++|..+--.+. +.+.+.-+-......|+.+.|.
T Consensus 499 RfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 499 RFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 34555667788888887776665 4556666666666777776654
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.96 E-value=1.1e+02 Score=23.58 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=29.4
Q ss_pred HHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 415 LALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
.+.++|+.|.. .++-.. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777764 444443 45677777778888888888887764
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.56 E-value=1.6e+02 Score=25.29 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=10.7
Q ss_pred HHHHHccCcHHHHHHHHHHc
Q 010031 404 LTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~ 423 (520)
|......|+.++|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33445556666665555554
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.60 E-value=52 Score=28.96 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=7.6
Q ss_pred HHHHhccCChHHHHHHHhh
Q 010031 440 VNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~ 458 (520)
..-|.+.|++++|.++|+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333344444444444433
No 439
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.32 E-value=57 Score=22.93 Aligned_cols=63 Identities=10% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHH
Q 010031 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (520)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 113 (520)
+..++..+.+.|+-.. .. .-...+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~-~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP-DM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH-HH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3457777777775322 22 222234556788899999999988999999999888887765433
No 440
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.06 E-value=2.1e+02 Score=25.99 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHcCCHH
Q 010031 364 TWTAMIWGLAIHGRYE 379 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~ 379 (520)
.|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4444555555554443
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.99 E-value=60 Score=19.79 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=18.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010031 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 303 (520)
.+.|-..++...+++|.+.|+.-++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666555555555444
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.48 E-value=11 Score=34.15 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=77.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCCh
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQV 449 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 449 (520)
....|.++.|++.|...++. .|.. ..|..-.+++.+.++...|++=+..... +.||. .-|-.-..+-.-.|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhch
Confidence 34568899999999988884 4444 4777777788888999999888877764 45653 2333333334457899
Q ss_pred HHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 450 DKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 450 ~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
++|...+..... .-+..+-..+=...-..+..++-...+++..+
T Consensus 199 e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999988887654 33444333444445556666666666666654
No 443
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.32 E-value=32 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.408 Sum_probs=15.3
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCC
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (520)
.+.+++.++++.++.+|..+|..+..++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444455555555455444444444444444
No 444
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.99 E-value=1.6e+02 Score=24.39 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 451 (520)
.+......++.++++..- ....-.-+.-|...|+++.+...|.++....+-.. ...++..+ +.+
T Consensus 68 ~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---------~~e 132 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---------WSE 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHH
Confidence 333444455555544332 11222345556777888888888877764322111 22222221 122
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 452 ALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+..+.+.+.. .+|..|... ....++...++..+++++|++-++|.++
T Consensus 133 ve~ii~~~r~----~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 133 VEKIIEEFRE----KLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHH----HHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 2222222211 112222111 1567778888888889988776776655
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.61 E-value=2.1e+02 Score=30.18 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010031 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
....+|+++.|.+.-..+- +..+|..|+......|+.+-|+..|++... |..|-..|.-.|+.++..++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456788888887766654 455789999999999999999999988764 33333456678998887777
Q ss_pred HHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+.+.. +.|.... +. .-.-.|+.++-.++++.....|- .| .....+|.-++|.++.++.-.
T Consensus 721 ~~iae~----r~D~~~~--~q-nalYl~dv~ervkIl~n~g~~~l--ay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDATGQ--FQ-NALYLGDVKERVKILENGGQLPL--AY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhHHH--HH-HHHHhccHHHHHHHHHhcCcccH--HH----HHHhhcCcHHHHHHHHHhhcc
Confidence 666642 3443321 11 11235888888888887664221 11 123468888899999888765
No 446
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=47.49 E-value=1.8e+02 Score=24.96 Aligned_cols=70 Identities=7% Similarity=-0.061 Sum_probs=32.6
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCC
Q 010031 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC-RTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
+++...-|-..-......|........|---.+..-+..+..++.-. ...++...-.-++++=++++.+.
T Consensus 121 ~p~~~~~Fv~~Tf~~i~~~~~H~iAAaFtfGREdlIP~MF~~il~~~~~~~~~~~~f~yYL~RHIElDgde 191 (232)
T PF11251_consen 121 VPEPAKRFVRFTFEIIAEGKPHEIAAAFTFGREDLIPDMFRSILKDLNIPPGQLPTFRYYLERHIELDGDE 191 (232)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHhccccchHHHHHHHHHHhcCCccccHHHHHHHHhhhhcCCCc
Confidence 33334344333334445555555555554444433344455555432 12445555555555555555543
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.16 E-value=1.2e+02 Score=22.57 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=36.6
Q ss_pred cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHH
Q 010031 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221 (520)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 221 (520)
....++|..|.+.+...+. ....+--.-+..+.++|++++|+ ..-... ..||...|.+|.. .+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~~~--~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQCH--CYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHTTS----GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--HhcccC--CCccHHHHHHHHH--HhhccHHHHHHH
Confidence 3456667777766666442 12222233334455666666662 211111 1455555544433 455666666555
Q ss_pred HhhCCC
Q 010031 222 FGMMPK 227 (520)
Q Consensus 222 ~~~~~~ 227 (520)
+.++..
T Consensus 92 l~rla~ 97 (116)
T PF09477_consen 92 LTRLAS 97 (116)
T ss_dssp HHHHCT
T ss_pred HHHHHh
Confidence 554443
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.12 E-value=2.3e+02 Score=25.99 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHh---hcCCCCChhHHHH-HHHHHhcc----CChHHHHHHHhhCCC---CCCHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRF---DYFIEPSVKHHTV-VVNLLSRV----GQVDKALNFINKMPE---TPDFV 466 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~-l~~~~~~~----g~~~~A~~~~~~~~~---~~~~~ 466 (520)
..+......|++.||-+.|.+.+.+..+ ..|.+.|+..+.. +.-.|... ...+.|..++++-.. +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3677777889999999999998887643 2455666554432 22333322 345566666666554 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
+|..+. |....++.+|-.+|-..+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccccc
Confidence 444443 4567789999988888776543
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.68 E-value=47 Score=29.86 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 403 (520)
.-|+..|....+.||+++|+.++++..+.|+.--..+|...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34677888888888888888888888888876544455443
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.93 E-value=64 Score=28.40 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcC----CCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYF----IEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
....+...|...|++++|.++|+.+...+. ..+...+...+..++.+.|+.+..+.+.=
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344556678888999999999888854322 12233455566677777777777665543
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.83 E-value=1.4e+02 Score=28.49 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C---------ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE--K---------DLLTWTAMIWGLAIHGRYEQAIQYFKKM 388 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~--~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 388 (520)
.|+..++-.|++..|+++++.+.- + .+.++.-++-+|.-.+++.+|.+.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777766665432 1 3335555566666666666666666543
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.61 E-value=30 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccH
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 132 (520)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667777777777777777777777777764433343
No 453
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.59 E-value=1.3e+02 Score=26.66 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=37.7
Q ss_pred hHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPE--TPDFVIWGALFCACRTHKDTK-IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+.+-++.++++.. +.+-..|..--......|+.. .=+...++++..+..|-.+|.+..++.+..++
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 4455555555443 234445555444444555555 55666666666666666666666666665544
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.01 E-value=1.1e+02 Score=21.52 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 126 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
.|+...|..-++.......-+. ++|+.....|+..|+.+|..+++...-+=-++...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 455
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.82 E-value=78 Score=23.52 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHh
Q 010031 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74 (520)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (520)
-.+++..+++|...+.|+.+.+.+.++| ..+....+.|-..+.
T Consensus 64 ~PtViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 64 NPTVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred CChHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3478899999999999999999999998 445555555544433
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.78 E-value=40 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
.-.++.+|...|++++|.++++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788888888888888777654
No 457
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.30 E-value=57 Score=17.94 Aligned_cols=22 Identities=9% Similarity=0.496 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFL 401 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~ 401 (520)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555544 334444443
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.18 E-value=3.7e+02 Score=28.00 Aligned_cols=191 Identities=12% Similarity=0.046 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChh----------HHHHHHHHHHHcCCHH
Q 010031 314 AGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLL----------TWTAMIWGLAIHGRYE 379 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~ 379 (520)
+-..++.+|.+.--.| .+.+...++-.|....+++...++.+.+.+ ||.. .|...+.--.+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3445566666543333 345566677777788888888888777665 3221 1222222223457888
Q ss_pred HHHHHHHHHHHC--CCCCCHH-----HHHHH--HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC-h
Q 010031 380 QAIQYFKKMMYS--GTEPDGT-----VFLAI--LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-V 449 (520)
Q Consensus 380 ~a~~~~~~~~~~--~~~p~~~-----~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 449 (520)
.|+.+.-.+.+. .+.||.. .|.-+ -+.|...+..+.|.+.|++..+ +.|+...=-.+...+...|+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhc
Confidence 888887777653 3566654 23222 1235566778888888888753 56765432233333333442 3
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCCCcchhHHHHhhhhhccCCC
Q 010031 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSC----SLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 450 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+...++- . +-..|-..+.+.|..++-..+|+-+. +.-.+|+.-...-+..+.+..-+-
T Consensus 338 ens~Elq-~--------IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 338 ENSLELQ-Q--------IGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cchHHHH-H--------HHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 3333321 1 11223344678899998888888774 233455555444455555444443
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.01 E-value=2.3e+02 Score=24.78 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccCChHHHHHHHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYIS 323 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 323 (520)
.+++..-+.|+++++...++++...+...+..--+.+-.+|- ..|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355667788888888888888888776666655555555553 2344445555555543
No 460
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=42.79 E-value=1.1e+02 Score=32.95 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHccCcHHHHHHHHHHcHhhc-----CCCCChhHHHHHHHHHhccCC---hHHHHHHHhhCCCCCCHH-HHHHHHHHH
Q 010031 405 TACWYSGQVKLALNFFDSMRFDY-----FIEPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPETPDFV-IWGALFCAC 475 (520)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~l~~~~ 475 (520)
.++...+.++.|...|+++...+ |..--...=-.++.-....|+ +++|+.-|+.+...|..+ -|..-.-+|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
.+.|++++=++.+.-+++..|+.|..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCcc
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.69 E-value=1.5e+02 Score=23.54 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
..+.+.|++++..- ..++..+...++.-.|.++++.+.+.++..+..|.-..++.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34445555554322 23444555555556666666666666655555555555556655553
No 462
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.52 E-value=1.1e+02 Score=29.05 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=16.3
Q ss_pred HhCCCCChHHHHHHHHHHhcCCChHHHHHHhc
Q 010031 56 LHNLFASSRITTQLISSASLHKSIDYALSIFD 87 (520)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 87 (520)
...+.||.++.+=+.+.++..-..+-...+++
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~Wd 207 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWD 207 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33445555555555555555445555444444
No 463
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.51 E-value=3.3e+02 Score=26.24 Aligned_cols=99 Identities=6% Similarity=-0.065 Sum_probs=43.1
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010031 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (520)
Q Consensus 171 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 250 (520)
++++...| +.+...+-...... ++...+.....++....+......+.+.+..++.........++...+..+-..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 55666666 34555444444221 122233322222222222222344444444455555556666665555555444
Q ss_pred HHHhcCCCCCcccHHHHHHHHHh
Q 010031 251 ELFEQMPEKGVVSWTAMINGFSQ 273 (520)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~ 273 (520)
.+..-+...+.......+.++..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHh
Confidence 44444444443333333344433
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.11 E-value=1.8e+02 Score=25.30 Aligned_cols=87 Identities=7% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC----------------CCcchHHHHH
Q 010031 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP----------------KNLHIFNVLI 101 (520)
Q Consensus 38 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~li 101 (520)
+.+..+..-..++.+-....+++-+..-..+++- ...|+..+|+.-++.-.. |.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif--ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF--TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh--hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCC
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRP 127 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p 127 (520)
..|... ++++|.+++.++-+.|..|
T Consensus 247 ~~~~~~-~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QACLKR-NIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHhc-cHHHHHHHHHHHHHcCCCH
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.07 E-value=98 Score=22.47 Aligned_cols=34 Identities=9% Similarity=-0.072 Sum_probs=20.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.-.|.+.|+.+.|.+-|+.-..+.|++...+..|
T Consensus 79 GlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 79 GLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 3345666666666666666666666665554433
No 466
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.97 E-value=2.9e+02 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHHH
Q 010031 232 SWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~ 248 (520)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45555555555555443
No 467
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=5.1e+02 Score=27.92 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
+.-.+.|.++.+---.-|..++..-..-+...|++..|.+++.++.++.+-.++...|-.++..+...|-
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3334444444432111233344444444555666666666666666555555555555555555555553
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.90 E-value=2.5e+02 Score=25.77 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------cccHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----H
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG--------VVSWTA-MINGFSQNGEAEKALAMFFQMLDAGVRANDF----T 298 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 298 (520)
.+......|++.|+.+.|.+.+.+.-+++ +..+.+ +.-.|....-..+-++..+.+.+.|...+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 45556667778888888877777654332 222222 1122333333445555555566666444332 2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHH
Q 010031 299 VVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
|..+- |....++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 22221 234456667766666554
No 469
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=2.8e+02 Score=25.61 Aligned_cols=87 Identities=8% Similarity=0.008 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CChh--HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE-------KDLL--TWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPDG 397 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~ 397 (520)
.....++....+.++.++|.++++++.+ |+.+ .-...+.++...|+..++.+++.+..+ -|++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred H--HHHHHHHHHHccCcHHHHHH
Q 010031 398 T--VFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 398 ~--~~~~l~~~~~~~g~~~~a~~ 418 (520)
. .|..--..|-..|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 470
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.59 E-value=5.7e+02 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC-------CCHHHHHHHHHHHHh-cCCHHHHHHHHhcCCCCC
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK-------KNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKG 260 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 260 (520)
..++.+...+++.+|..+.++-+- -+...|..=+..+.+ .++.+----++..+.+.|
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ED 763 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNED 763 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccc
Confidence 345566778888888888776552 344444433333332 344454444455555544
No 471
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.39 E-value=1.5e+02 Score=21.24 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=10.5
Q ss_pred HHHccCcHHHHHHHHHHcH
Q 010031 406 ACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~ 424 (520)
.....|++++|...+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444566666666655554
No 472
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.39 E-value=3.6e+02 Score=25.70 Aligned_cols=55 Identities=4% Similarity=-0.072 Sum_probs=36.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhh--ccCChHHHHHHHHHHHHc
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDF--TVVSALSACA--KVGALEAGVRVHNYISCN 325 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 325 (520)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888888888888876 555444 3444445554 345677888888876654
No 473
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=38.22 E-value=96 Score=22.13 Aligned_cols=59 Identities=10% Similarity=0.286 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCC
Q 010031 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109 (520)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 109 (520)
...++..+.+.|+-.+ ..+.. ..+...+.+.+.++++.++..++.+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~-~~~~~---I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTD-SMAES---IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCH-HHHHH---HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3457777777775322 22222 22344677888888888888888888888888866554
No 474
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=38.21 E-value=68 Score=18.47 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
++..|.......++++.|..-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666777777888888888888888764
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.19 E-value=3.6e+02 Score=25.69 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCC--CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC
Q 010031 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKN--KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (520)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (520)
..+.-+...|..+|+++.|++.+-+...-- .+..+..|..+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356677777888888888888887754321 122344455556666666777666666555543
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.68 E-value=1.5e+02 Score=24.25 Aligned_cols=58 Identities=12% Similarity=-0.015 Sum_probs=28.6
Q ss_pred hCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 122 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34554444332 23344444444555666666666655444444444445555555544
No 477
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.61 E-value=1.4e+02 Score=20.78 Aligned_cols=13 Identities=0% Similarity=0.146 Sum_probs=5.4
Q ss_pred cCCChHHHHHHhc
Q 010031 75 LHKSIDYALSIFD 87 (520)
Q Consensus 75 ~~~~~~~A~~~~~ 87 (520)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 478
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=37.19 E-value=1.1e+02 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=17.6
Q ss_pred HHHcCCHHHHHHHHHHHh-------cCCCCCcchhHHHH
Q 010031 475 CRTHKDTKIAKIALQSSC-------SLNLSIPQAMSYCQ 506 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~ 506 (520)
|-+.|++++|+..|++++ ...||++....+..
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 555666665555555543 35677666544433
No 479
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=36.99 E-value=1.3e+02 Score=23.28 Aligned_cols=42 Identities=7% Similarity=-0.055 Sum_probs=30.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
..+...-+.+.|.++|+++++..|+...++..+...++....
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~~l 125 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSPEL 125 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHSS
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcHHH
Confidence 344556688999999999999999999998888777765443
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.94 E-value=2.8e+02 Score=24.05 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (520)
++.++...|+.+.|..+++.+.. ...+......++.. ..+|.+.+|..+.+....+-....+..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 45555556777777776666531 01111222222222 4556777777666665542223455555555543
No 481
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.61 E-value=2.6e+02 Score=23.49 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhc-------------CCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDY-------------FIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
+++..|.+.-++.++.++++.+.+.. +..+.-.+-|.-...+.+.|.++.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45556777778888888887775410 1122234556677778888888888888875
No 482
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.96 E-value=2.2e+02 Score=22.58 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=35.0
Q ss_pred hhhCCCCCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 120 MLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455666555433 244445443 45667788888887777555555544455666665544
No 483
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=35.36 E-value=1.4e+02 Score=26.46 Aligned_cols=67 Identities=15% Similarity=-0.095 Sum_probs=43.9
Q ss_pred HHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+=..|.++++++.|....++... +.|+.-+.--...|.+.|....|.+-++..++.-|+++.+-..-
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 33456667777777777766543 33455555566667777777777777777777777777665443
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.28 E-value=1.7e+02 Score=24.01 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=30.5
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
...|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555444332 33333333344556666666666666555555555555566655543
No 485
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.18 E-value=3.4e+02 Score=24.45 Aligned_cols=146 Identities=16% Similarity=0.060 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------CcHH
Q 010031 347 IEAASLVFGETKEK-DLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-------GQVK 414 (520)
Q Consensus 347 ~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------g~~~ 414 (520)
...|...+...... +......|...|.. ..+..+|..+|++..+.|..+...+...+...+... -+..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 44455555433332 22233334333333 236677777777777766554322222233333222 1233
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----------
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRTHK----------- 479 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 479 (520)
.|...+.++.. .+ +......+...|.. ..+.++|...|.+.-..-+......+. .+...|
T Consensus 173 ~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhccc
Confidence 67777777653 22 33333444444433 336777777777765533333333333 444444
Q ss_pred ----CHHHHHHHHHHHhcCCCC
Q 010031 480 ----DTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 480 ----~~~~A~~~~~~~~~~~p~ 497 (520)
+...|...+.+.....+.
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCCh
Confidence 677777777777665443
No 486
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.11 E-value=4e+02 Score=25.27 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=29.3
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSV-----KHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
.|...+|+-.|.-+-+++..++--.|+. ..|+.++......+.+=.+-+.++.+-.
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 3445555555555555554433233442 3455556655566666666666655443
No 487
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.83 E-value=3.5e+02 Score=24.48 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 393 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
-.++..+...++..++..+++.+-.++++......+...|...|..+++.....|+..-..+++++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455556666666666666666666666666553223344556666666666666666666666554
No 488
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.68 E-value=60 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=18.1
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 477 THKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 477 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
..||++.|++.+.++-+..++.+-.+..-+.+-.+.|
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3566666666666664443333333333344444444
No 489
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.47 E-value=2.6e+02 Score=28.50 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCC------CHHHHHHHHHHHHhcCCH
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDL 246 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 246 (520)
+|+.+|..+|++..+..+++..... =...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 6677777777777777777666541 123445555555555543
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.44 E-value=1.2e+02 Score=22.73 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChH
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (520)
..++.++...+..-.|.++++.+.+.+...+..+....++.+...|-+.
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3466777777777889999999988887777777777788888777544
No 491
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=3.5e+02 Score=24.13 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=105.8
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH-H
Q 010031 341 YAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAI-HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK-L 415 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~ 415 (520)
+.+......|.++-.++..-++ ..|.---..+.. ..+..+-++.+.+..+... -|...|..-=......|++. .
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccc
Confidence 4556667777777777665333 233322222221 2346666777888777532 35556655444444566666 6
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC--CCHHHHHHHHHHH------HHcCCHHHHHHH
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET--PDFVIWGALFCAC------RTHKDTKIAKIA 487 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~------~~~g~~~~A~~~ 487 (520)
=+++.+.|.. +-..+-+.|..--.++..-+.++.-+.+..++.+. -+...|+.-.... ...-..+.=+++
T Consensus 132 ELef~~~~l~--~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLD--DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHh--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 6778888874 22455566666666676777788888887777652 3455666433221 112234556677
Q ss_pred HHHHhcCCCCCcchhHHHHhhhhh-cc
Q 010031 488 LQSSCSLNLSIPQAMSYCQTFMQQ-KG 513 (520)
Q Consensus 488 ~~~~~~~~p~~~~~~~~l~~~~~~-~g 513 (520)
..+.+.+.|+|-++|.+|..++.. .|
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 888889999999999999999996 44
No 492
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.61 E-value=4.6e+02 Score=25.59 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=63.0
Q ss_pred ccCchHHH-HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 010031 41 SNSTKQLR-QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISH 116 (520)
Q Consensus 41 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 116 (520)
.||+..|. ++++-+....-.|+.....+.| +...|+++.+.+.+..... ....+-..+++...+.|+++.|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45655553 3444444443344443333332 3456777777777665443 3445566677777777777777777
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 010031 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160 (520)
Q Consensus 117 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 160 (520)
-+-|....+. ++..........-..|-++++...|+++...+.
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 7776654442 222222222222344566666666666665443
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.54 E-value=1e+02 Score=23.31 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChH
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (520)
..++.++...++.-.|.++++.+.+.+...+..+.-..++.+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4577888888888999999999999888888777667777888777543
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.25 E-value=2.5e+02 Score=22.30 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=35.1
Q ss_pred HHHcCCCCCHHHHHHHHHHhhcc-CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 287 MLDAGVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 287 m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 4555666554332 334444433 4566778888888777766666665556666666554
No 495
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.20 E-value=3.5e+02 Score=24.07 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=71.8
Q ss_pred hcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhhccCChH-HHH
Q 010031 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF----FQMLDAGVRANDFTVVSALSACAKVGALE-AGV 316 (520)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 316 (520)
+.+++++|.+++.. =...+.+.|+..-|.++- +-..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665533 123345555554444332 33333455666655555555444332211 122
Q ss_pred HHHHHHH---HcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 317 RVHNYIS---CND--FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 317 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
++.+.+. +.+ ..-++.....+...|.+.|++.+|+.-|-....++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 221 2346677778888888888888888766544333333332223222222222222
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
+. .....+--|.-.++...|...++...+.
T Consensus 141 ----dl-fi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DL-FIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HH-HHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 2222233355678888888877776643
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.10 E-value=3e+02 Score=24.84 Aligned_cols=149 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---------
Q 010031 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-----VASWVSLIDGFMRKGDLKKAGELFEQMPEKG--------- 260 (520)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 260 (520)
+..|...+|.|+. -+..++++--+-+++..+.| ...+..+...|++.++.+.+.++..+..+..
T Consensus 77 ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA--CAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
..+-..+.-.|....-.++.++..+.|.+.|...+...-...-.+ +....++.+|-.++......--......|...+
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~v 234 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAV 234 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHH
Q ss_pred HHHHhcC
Q 010031 339 DMYAKCG 345 (520)
Q Consensus 339 ~~~~~~~ 345 (520)
....-+|
T Consensus 235 rYa~~~G 241 (412)
T COG5187 235 RYAIFCG 241 (412)
T ss_pred HHHHHhh
No 497
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.01 E-value=1.5e+02 Score=20.57 Aligned_cols=37 Identities=8% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHH
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 69 (520)
.+++..|++|..-+.|..+++.+.+.| ..+....+.|
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 478889999999999999999999998 3444444433
No 498
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.90 E-value=3.3e+02 Score=23.63 Aligned_cols=94 Identities=7% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 010031 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
+...++++.|.+.+-.-. +.|+ ....++.++...|+.+.|+.+++.... .+......++.. ..++.+.+|..
T Consensus 88 ~LD~~~~~~A~~~L~~ps---~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPS---LIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HhChHhHHHHHHHhCCCC---CCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 345577777777773321 1221 122467777778888888888877665 222233333333 56678888877
Q ss_pred HHhcCCCCC-cccHHHHHHHHHh
Q 010031 252 LFEQMPEKG-VVSWTAMINGFSQ 273 (520)
Q Consensus 252 ~~~~~~~~~-~~~~~~l~~~~~~ 273 (520)
+-+...+.. ...+..++..+..
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHHHH
Confidence 776665532 2345555555543
No 499
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.89 E-value=3.8e+02 Score=24.35 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
++..+.+.++.....+.+..+. .+..-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444332 222333445556667777777777766554
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.62 E-value=4.4e+02 Score=25.04 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=32.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH--ccCcHHHHHHHHHH
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACW--YSGQVKLALNFFDS 422 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~--~~g~~~~a~~~~~~ 422 (520)
..+.+.+++..|..+|+++....+.|... .|..+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556778888888888887765444433 3333444432 35567777777765
Done!