Query 010031
Match_columns 520
No_of_seqs 626 out of 3283
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 18:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-41 3.4E-46 343.7 32.8 446 61-511 82-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.6E-41 2.9E-45 336.9 31.7 435 73-516 63-567 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-30 9E-35 245.7 34.4 375 101-514 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-27 8.4E-32 225.2 34.0 374 69-480 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.9E-28 1.7E-32 233.6 21.1 184 262-446 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.8E-33 236.8 15.5 196 48-243 10-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.8E-26 2E-30 224.2 28.3 438 65-509 8-493 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-24 6.5E-29 209.6 26.2 309 163-508 25-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4.2E-24 1.4E-28 207.2 28.1 378 112-517 10-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 6.9E-24 2.4E-28 210.6 28.0 431 64-505 26-502 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.8E-24 6.1E-29 213.6 22.3 413 94-516 6-466 (514)
12 3fp2_A TPR repeat-containing p 99.9 4.6E-23 1.6E-27 204.7 27.5 409 94-516 25-479 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 181.5 26.2 311 164-514 3-355 (359)
14 3hym_B Cell division cycle pro 99.9 2.1E-20 7.2E-25 173.1 24.8 281 233-517 25-323 (330)
15 2xm6_A Protein corresponding t 99.9 8.7E-19 3E-23 171.4 33.1 350 143-511 57-452 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 2.9E-19 9.8E-24 167.4 27.0 322 129-477 3-352 (359)
17 1xi4_A Clathrin heavy chain; a 99.8 1.5E-16 5.2E-21 163.0 44.2 339 131-512 987-1327(1630)
18 2ooe_A Cleavage stimulation fa 99.8 1.1E-17 3.8E-22 165.2 34.8 420 51-499 2-497 (530)
19 1fch_A Peroxisomal targeting s 99.8 4.7E-19 1.6E-23 166.7 22.6 269 243-517 38-348 (368)
20 3hym_B Cell division cycle pro 99.8 3E-18 1E-22 158.5 27.3 281 198-482 21-322 (330)
21 1b89_A Protein (clathrin heavy 99.8 8.4E-19 2.9E-23 161.3 22.8 375 75-490 15-413 (449)
22 1b89_A Protein (clathrin heavy 99.8 5.6E-19 1.9E-23 162.5 19.9 384 34-460 9-415 (449)
23 3mkr_A Coatomer subunit epsilo 99.8 6.9E-18 2.4E-22 152.2 26.8 255 240-504 9-274 (291)
24 2xm6_A Protein corresponding t 99.8 5.3E-17 1.8E-21 158.7 34.6 343 148-511 26-411 (490)
25 2ooe_A Cleavage stimulation fa 99.8 3.8E-17 1.3E-21 161.4 33.6 397 92-516 11-480 (530)
26 1xi4_A Clathrin heavy chain; a 99.8 9.8E-16 3.3E-20 157.2 43.0 402 62-513 984-1415(1630)
27 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.3E-23 163.0 18.1 252 261-516 65-344 (365)
28 1fch_A Peroxisomal targeting s 99.8 1.5E-18 5.3E-23 163.2 18.0 297 173-494 34-359 (368)
29 4eqf_A PEX5-related protein; a 99.8 6.6E-18 2.3E-22 158.7 18.4 260 197-492 63-354 (365)
30 4g1t_A Interferon-induced prot 99.8 3E-17 1E-21 160.0 23.5 385 93-507 50-472 (472)
31 3cv0_A Peroxisome targeting si 99.8 4.7E-17 1.6E-21 150.2 20.6 250 262-516 22-303 (327)
32 3uq3_A Heat shock protein STI1 99.7 6.4E-17 2.2E-21 143.8 18.7 235 262-509 6-257 (258)
33 3cv0_A Peroxisome targeting si 99.7 2.2E-17 7.6E-22 152.4 16.3 274 198-498 20-319 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 7.7E-16 2.6E-20 138.8 25.8 266 208-486 8-286 (291)
35 4g1t_A Interferon-induced prot 99.7 1.7E-15 5.7E-20 147.6 26.8 339 163-517 50-448 (472)
36 3u4t_A TPR repeat-containing p 99.7 3E-16 1E-20 140.7 18.7 246 264-514 6-270 (272)
37 3spa_A Mtrpol, DNA-directed RN 99.7 3E-18 1E-22 170.2 3.3 119 95-213 128-250 (1134)
38 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.3E-20 131.3 16.9 186 328-517 2-203 (217)
39 3spa_A Mtrpol, DNA-directed RN 99.7 2.7E-17 9.2E-22 163.4 7.0 152 62-213 126-286 (1134)
40 2h6f_A Protein farnesyltransfe 99.7 4.5E-15 1.5E-19 138.3 20.3 245 262-512 98-366 (382)
41 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-14 5.1E-19 128.0 22.2 203 300-505 41-249 (252)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.4E-14 4.9E-19 129.9 21.8 224 273-502 17-252 (275)
43 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 7.8E-20 132.4 15.8 209 301-513 28-241 (243)
44 1ouv_A Conserved hypothetical 99.7 3.2E-14 1.1E-18 127.5 23.2 229 261-502 6-259 (273)
45 3uq3_A Heat shock protein STI1 99.6 7E-15 2.4E-19 130.5 17.9 208 296-516 5-224 (258)
46 2vq2_A PILW, putative fimbrial 99.6 2.8E-14 9.5E-19 123.7 21.0 205 299-506 11-223 (225)
47 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-14 8.2E-19 137.7 21.3 247 32-291 7-281 (452)
48 3e4b_A ALGK; tetratricopeptide 99.6 4.7E-15 1.6E-19 142.6 16.1 250 231-494 142-421 (452)
49 4e6h_A MRNA 3'-END-processing 99.6 1.4E-12 4.7E-17 129.7 33.8 438 45-505 49-581 (679)
50 2pl2_A Hypothetical conserved 99.6 5.8E-14 2E-18 120.8 19.5 192 261-458 5-210 (217)
51 3u4t_A TPR repeat-containing p 99.6 1.9E-13 6.5E-18 122.3 21.2 241 232-475 5-265 (272)
52 3sf4_A G-protein-signaling mod 99.6 2.4E-14 8.4E-19 136.2 14.4 288 198-516 8-364 (406)
53 3vtx_A MAMA; tetratricopeptide 99.6 8.3E-14 2.8E-18 116.6 14.9 167 330-500 4-176 (184)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.2E-14 1.1E-18 127.6 13.1 237 243-488 18-269 (275)
55 1ouv_A Conserved hypothetical 99.5 2.1E-12 7.1E-17 115.6 24.2 210 295-516 5-239 (273)
56 2ond_A Cleavage stimulation fa 99.5 2.7E-12 9.3E-17 117.0 25.0 221 278-502 33-278 (308)
57 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-12 6.5E-17 114.3 22.3 194 262-461 38-237 (252)
58 4a1s_A PINS, partner of inscut 99.5 3.7E-14 1.3E-18 135.3 12.0 266 202-498 51-376 (411)
59 2h6f_A Protein farnesyltransfe 99.5 1.7E-13 5.8E-18 127.7 15.6 211 297-513 98-323 (382)
60 2vq2_A PILW, putative fimbrial 99.5 4.5E-13 1.5E-17 116.0 17.2 186 329-516 6-199 (225)
61 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7E-18 132.1 16.3 181 330-514 101-307 (474)
62 3ro2_A PINS homolog, G-protein 99.5 1.2E-13 4.1E-18 127.6 14.0 236 263-498 45-336 (338)
63 2q7f_A YRRB protein; TPR, prot 99.5 3.6E-13 1.2E-17 118.2 16.1 207 261-472 23-234 (243)
64 3sf4_A G-protein-signaling mod 99.5 4.1E-13 1.4E-17 127.7 16.1 254 262-516 10-324 (406)
65 4a1s_A PINS, partner of inscut 99.5 2.5E-13 8.4E-18 129.6 14.4 252 264-516 51-360 (411)
66 3ulq_A Response regulator aspa 99.5 4.7E-13 1.6E-17 126.3 16.1 230 267-496 109-370 (383)
67 4i17_A Hypothetical protein; T 99.5 1.4E-12 4.9E-17 113.2 17.0 206 294-511 5-226 (228)
68 2ond_A Cleavage stimulation fa 99.5 1.9E-12 6.4E-17 118.0 18.4 248 247-508 33-306 (308)
69 3ro2_A PINS homolog, G-protein 99.5 6.2E-13 2.1E-17 122.8 15.0 252 264-516 8-320 (338)
70 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-12 4.9E-17 109.0 15.8 152 361-516 4-158 (184)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.4E-18 125.4 10.7 235 263-497 29-310 (311)
72 3as5_A MAMA; tetratricopeptide 99.4 5.5E-12 1.9E-16 105.3 18.0 170 331-503 8-182 (186)
73 4e6h_A MRNA 3'-END-processing 99.4 5E-10 1.7E-14 111.4 33.0 404 92-516 64-558 (679)
74 3ulq_A Response regulator aspa 99.4 1.1E-11 3.8E-16 116.9 19.0 228 170-424 109-366 (383)
75 3q15_A PSP28, response regulat 99.4 3.1E-11 1.1E-15 113.5 21.9 229 266-495 106-366 (378)
76 4abn_A Tetratricopeptide repea 99.4 4.3E-12 1.5E-16 122.8 16.1 188 295-488 101-315 (474)
77 4gyw_A UDP-N-acetylglucosamine 99.4 2.7E-12 9.4E-17 129.1 14.7 163 331-497 9-177 (723)
78 4ga2_A E3 SUMO-protein ligase 99.3 1.3E-12 4.3E-17 104.9 5.9 144 368-515 3-150 (150)
79 4i17_A Hypothetical protein; T 99.3 3E-11 1E-15 104.8 14.8 152 361-515 6-169 (228)
80 1qqe_A Vesicular transport pro 99.3 4.6E-11 1.6E-15 107.8 15.8 215 268-510 44-285 (292)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-11 3.6E-16 124.9 12.6 146 364-514 11-160 (723)
82 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.8E-14 102.7 24.9 268 233-500 17-328 (373)
83 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-12 1.1E-16 116.7 6.1 222 295-516 26-295 (311)
84 3q15_A PSP28, response regulat 99.3 2.5E-10 8.5E-15 107.3 19.1 57 170-226 107-168 (378)
85 3mv2_B Coatomer subunit epsilo 99.3 5.9E-10 2E-14 98.4 19.4 182 315-504 85-292 (310)
86 3qky_A Outer membrane assembly 99.2 2.3E-10 7.9E-15 101.4 16.9 183 330-514 14-247 (261)
87 3as5_A MAMA; tetratricopeptide 99.2 1.2E-10 4E-15 97.1 14.1 151 363-516 9-161 (186)
88 1hz4_A MALT regulatory protein 99.2 1.9E-09 6.5E-14 101.1 23.8 162 263-424 137-320 (373)
89 1qqe_A Vesicular transport pro 99.2 5.9E-11 2E-15 107.1 12.6 176 311-501 32-235 (292)
90 3edt_B KLC 2, kinesin light ch 99.2 2.6E-10 9E-15 102.2 15.9 199 297-495 44-282 (283)
91 4gco_A Protein STI-1; structur 99.2 9.7E-11 3.3E-15 90.5 10.8 115 393-509 8-125 (126)
92 2fo7_A Synthetic consensus TPR 99.2 8.5E-10 2.9E-14 86.3 15.2 132 364-498 3-136 (136)
93 3urz_A Uncharacterized protein 99.2 4.7E-10 1.6E-14 95.5 13.6 138 365-508 57-199 (208)
94 3mv2_B Coatomer subunit epsilo 99.2 4.4E-09 1.5E-13 92.8 19.9 226 269-514 21-270 (310)
95 2pzi_A Probable serine/threoni 99.1 1.5E-10 5.2E-15 117.1 11.9 194 307-506 402-614 (681)
96 2vsy_A XCC0866; transferase, g 99.1 1.2E-09 4E-14 108.7 15.3 159 344-506 2-169 (568)
97 3dra_A Protein farnesyltransfe 99.1 7.4E-08 2.5E-12 86.0 25.4 233 272-509 43-303 (306)
98 2pzi_A Probable serine/threoni 99.1 2.9E-09 9.9E-14 107.7 17.3 181 272-460 402-603 (681)
99 2uy1_A Cleavage stimulation fa 99.1 3.3E-08 1.1E-12 95.5 23.8 377 75-493 6-412 (493)
100 3qou_A Protein YBBN; thioredox 99.1 2E-09 6.9E-14 96.6 13.5 162 350-516 105-272 (287)
101 2ifu_A Gamma-SNAP; membrane fu 99.0 2E-09 6.8E-14 97.8 13.2 199 274-500 4-229 (307)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.9E-09 2.7E-13 89.1 15.2 185 297-501 5-220 (225)
103 3qky_A Outer membrane assembly 99.0 4.1E-09 1.4E-13 93.3 13.6 154 360-515 13-201 (261)
104 3edt_B KLC 2, kinesin light ch 99.0 2.9E-09 9.9E-14 95.3 11.7 197 262-460 44-279 (283)
105 2vgx_A Chaperone SYCD; alterna 99.0 1.3E-09 4.3E-14 87.0 7.9 122 384-509 9-133 (148)
106 2r5s_A Uncharacterized protein 99.0 6E-09 2E-13 86.0 12.3 155 334-492 9-171 (176)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.1E-08 7.1E-13 85.6 16.1 90 334-425 9-99 (213)
108 1na0_A Designed protein CTPR3; 99.0 7.6E-09 2.6E-13 79.5 12.0 115 397-513 9-125 (125)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 2E-08 6.8E-13 86.5 15.5 152 365-516 7-201 (225)
110 2lni_A Stress-induced-phosphop 99.0 5.2E-09 1.8E-13 81.6 10.8 116 397-514 16-133 (133)
111 2r5s_A Uncharacterized protein 98.9 4E-09 1.4E-13 87.0 10.4 148 364-516 8-161 (176)
112 3rjv_A Putative SEL1 repeat pr 98.9 3.5E-08 1.2E-12 84.1 16.0 181 314-506 4-207 (212)
113 2vyi_A SGTA protein; chaperone 98.9 1.3E-08 4.4E-13 78.9 11.8 116 398-515 13-130 (131)
114 3gyz_A Chaperone protein IPGC; 98.9 7E-09 2.4E-13 82.5 10.2 105 393-499 31-138 (151)
115 4ga2_A E3 SUMO-protein ligase 98.9 2.6E-09 9E-14 85.4 7.8 139 338-480 4-149 (150)
116 3qou_A Protein YBBN; thioredox 98.9 6.4E-08 2.2E-12 86.7 17.2 163 293-458 114-280 (287)
117 2fo7_A Synthetic consensus TPR 98.9 3.1E-08 1.1E-12 77.2 13.5 128 263-424 3-130 (136)
118 3urz_A Uncharacterized protein 98.9 2.3E-08 7.9E-13 84.9 13.3 184 264-473 7-198 (208)
119 3rjv_A Putative SEL1 repeat pr 98.9 8E-08 2.8E-12 81.8 16.0 171 280-460 5-195 (212)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.2E-08 2.5E-12 82.2 15.5 137 364-506 8-162 (213)
121 2uy1_A Cleavage stimulation fa 98.8 2.6E-07 8.9E-12 89.2 20.3 365 41-460 7-411 (493)
122 2xcb_A PCRH, regulatory protei 98.8 1.8E-08 6.2E-13 79.6 10.0 116 393-510 13-131 (142)
123 2vsy_A XCC0866; transferase, g 98.8 1.4E-08 4.7E-13 101.0 11.3 135 375-513 2-139 (568)
124 1elw_A TPR1-domain of HOP; HOP 98.8 4.4E-08 1.5E-12 74.3 11.7 112 397-510 4-117 (118)
125 2e2e_A Formate-dependent nitri 98.8 3.1E-08 1.1E-12 81.7 11.3 132 373-508 21-158 (177)
126 3upv_A Heat shock protein STI1 98.8 2.7E-08 9.3E-13 76.8 10.2 112 398-511 5-124 (126)
127 4f3v_A ESX-1 secretion system 98.8 6E-08 2.1E-12 84.5 12.7 139 365-508 105-250 (282)
128 3u3w_A Transcriptional activat 98.8 4.8E-07 1.6E-11 81.4 19.2 158 337-494 81-266 (293)
129 3sz7_A HSC70 cochaperone (SGT) 98.8 4.6E-08 1.6E-12 79.5 11.2 109 398-508 12-122 (164)
130 3q7a_A Farnesyltransferase alp 98.8 7.3E-06 2.5E-10 73.9 25.5 235 270-509 63-347 (349)
131 2dba_A Smooth muscle cell asso 98.7 9.8E-08 3.3E-12 75.8 11.9 114 396-512 27-146 (148)
132 2qfc_A PLCR protein; TPR, HTH, 98.7 3.5E-07 1.2E-11 82.3 16.3 162 333-494 77-266 (293)
133 3u3w_A Transcriptional activat 98.7 1E-06 3.5E-11 79.2 18.4 150 366-515 79-252 (293)
134 3gw4_A Uncharacterized protein 98.7 9.1E-08 3.1E-12 80.8 10.8 154 343-496 4-178 (203)
135 2ifu_A Gamma-SNAP; membrane fu 98.7 1.3E-07 4.3E-12 85.8 12.4 71 243-324 29-104 (307)
136 3gyz_A Chaperone protein IPGC; 98.7 3.7E-08 1.3E-12 78.2 7.6 88 429-516 31-121 (151)
137 1p5q_A FKBP52, FK506-binding p 98.7 7.7E-08 2.7E-12 88.3 9.7 145 346-494 128-294 (336)
138 2qfc_A PLCR protein; TPR, HTH, 98.7 3E-07 1E-11 82.7 13.3 153 364-516 77-253 (293)
139 2c2l_A CHIP, carboxy terminus 98.6 5E-08 1.7E-12 87.1 8.0 192 295-496 3-201 (281)
140 3dra_A Protein farnesyltransfe 98.6 2.4E-06 8E-11 76.3 18.7 203 310-516 47-275 (306)
141 3q49_B STIP1 homology and U bo 98.6 2E-07 6.8E-12 73.0 10.5 114 396-511 8-128 (137)
142 1hxi_A PEX5, peroxisome target 98.6 1.2E-07 4.2E-12 72.3 8.9 99 400-500 20-120 (121)
143 1a17_A Serine/threonine protei 98.6 2.5E-07 8.5E-12 75.1 11.2 130 362-495 13-147 (166)
144 2c2l_A CHIP, carboxy terminus 98.6 1.6E-07 5.5E-12 83.8 10.8 189 262-461 5-198 (281)
145 1a17_A Serine/threonine protei 98.6 7.4E-07 2.5E-11 72.2 13.5 124 332-459 14-143 (166)
146 2fbn_A 70 kDa peptidylprolyl i 98.6 2.8E-07 9.6E-12 77.5 10.9 153 341-514 14-171 (198)
147 4f3v_A ESX-1 secretion system 98.6 1.2E-06 4.2E-11 76.3 15.0 124 204-327 107-239 (282)
148 1elr_A TPR2A-domain of HOP; HO 98.6 2.4E-07 8.3E-12 71.6 9.7 113 399-514 6-127 (131)
149 3gw4_A Uncharacterized protein 98.6 1.6E-06 5.5E-11 73.0 15.5 98 363-460 67-174 (203)
150 2vgx_A Chaperone SYCD; alterna 98.6 3.4E-08 1.2E-12 78.6 4.4 85 432-516 20-106 (148)
151 1dce_A Protein (RAB geranylger 98.6 1.7E-06 5.9E-11 84.9 17.3 167 346-516 44-243 (567)
152 3dss_A Geranylgeranyl transfer 98.6 1.3E-05 4.5E-10 71.9 21.2 230 272-508 40-318 (331)
153 4gcn_A Protein STI-1; structur 98.6 2.5E-07 8.7E-12 71.3 8.9 104 399-505 10-122 (127)
154 1p5q_A FKBP52, FK506-binding p 98.6 4.8E-07 1.7E-11 83.0 12.1 146 310-460 127-292 (336)
155 3rkv_A Putative peptidylprolyl 98.6 2.2E-07 7.4E-12 75.3 8.7 81 433-513 63-146 (162)
156 4gco_A Protein STI-1; structur 98.6 6.7E-07 2.3E-11 68.7 11.0 104 364-471 15-121 (126)
157 2kck_A TPR repeat; tetratricop 98.6 2.1E-07 7.2E-12 69.7 8.0 99 399-499 8-111 (112)
158 2xev_A YBGF; tetratricopeptide 98.5 8.5E-07 2.9E-11 68.4 11.5 109 402-512 7-123 (129)
159 1na0_A Designed protein CTPR3; 98.5 2.8E-06 9.7E-11 64.7 13.4 113 362-477 9-123 (125)
160 3k9i_A BH0479 protein; putativ 98.5 8.3E-08 2.8E-12 72.9 4.3 106 409-514 2-110 (117)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7.9E-07 2.7E-11 85.3 11.9 144 346-493 249-414 (457)
162 3q7a_A Farnesyltransferase alp 98.5 2.5E-06 8.7E-11 76.9 14.0 167 345-515 68-258 (349)
163 2vyi_A SGTA protein; chaperone 98.5 2E-06 7E-11 66.2 11.9 115 362-480 12-129 (131)
164 2lni_A Stress-induced-phosphop 98.5 1.8E-06 6.1E-11 66.8 11.5 115 361-479 15-132 (133)
165 2fbn_A 70 kDa peptidylprolyl i 98.4 4.1E-07 1.4E-11 76.5 7.9 147 302-453 10-176 (198)
166 2if4_A ATFKBP42; FKBP-like, al 98.4 4.8E-07 1.7E-11 83.0 9.0 132 365-500 182-334 (338)
167 2hr2_A Hypothetical protein; a 98.4 5.9E-07 2E-11 70.5 8.1 76 435-510 59-147 (159)
168 4gcn_A Protein STI-1; structur 98.4 2E-06 7E-11 66.1 10.5 105 364-470 10-121 (127)
169 3ro3_A PINS homolog, G-protein 98.4 9.1E-07 3.1E-11 71.3 9.0 134 364-497 11-161 (164)
170 2xcb_A PCRH, regulatory protei 98.4 5.9E-07 2E-11 70.8 7.5 84 433-516 18-103 (142)
171 2e2e_A Formate-dependent nitri 98.4 2.2E-07 7.4E-12 76.6 5.2 108 407-516 20-132 (177)
172 1ihg_A Cyclophilin 40; ppiase 98.4 9.3E-07 3.2E-11 82.1 9.7 132 363-515 224-357 (370)
173 2l6j_A TPR repeat-containing p 98.4 1.1E-06 3.9E-11 65.5 8.3 85 432-516 3-95 (111)
174 3upv_A Heat shock protein STI1 98.4 6E-07 2E-11 69.1 6.8 84 433-516 4-89 (126)
175 1na3_A Designed protein CTPR2; 98.4 9.2E-07 3.1E-11 63.3 7.0 81 433-513 9-91 (91)
176 4b4t_Q 26S proteasome regulato 98.3 1.1E-05 3.8E-10 76.9 15.9 159 335-493 59-244 (434)
177 1hxi_A PEX5, peroxisome target 98.3 8.5E-07 2.9E-11 67.6 6.4 82 435-516 19-102 (121)
178 1wao_1 Serine/threonine protei 98.3 1.3E-06 4.6E-11 84.1 8.9 98 409-508 18-117 (477)
179 1elw_A TPR1-domain of HOP; HOP 98.3 1.9E-05 6.4E-10 59.3 13.3 106 363-472 5-113 (118)
180 3q49_B STIP1 homology and U bo 98.3 2.3E-06 7.8E-11 66.8 8.1 87 430-516 6-94 (137)
181 4b4t_Q 26S proteasome regulato 98.3 2.1E-05 7.2E-10 75.0 15.8 96 364-459 137-242 (434)
182 3sz7_A HSC70 cochaperone (SGT) 98.2 7.1E-06 2.4E-10 66.3 10.6 93 364-460 13-106 (164)
183 3dss_A Geranylgeranyl transfer 98.2 7.3E-05 2.5E-09 67.1 17.9 195 308-506 41-279 (331)
184 1wao_1 Serine/threonine protei 98.2 6.1E-07 2.1E-11 86.5 4.6 126 371-500 15-156 (477)
185 2if4_A ATFKBP42; FKBP-like, al 98.2 1.9E-06 6.5E-11 79.0 7.7 110 399-511 181-310 (338)
186 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.8E-10 63.0 11.9 97 361-461 27-127 (148)
187 2kck_A TPR repeat; tetratricop 98.2 2.5E-06 8.6E-11 63.6 7.0 86 432-517 5-95 (112)
188 1elr_A TPR2A-domain of HOP; HO 98.2 7.8E-06 2.7E-10 62.9 9.8 111 363-474 5-121 (131)
189 1zu2_A Mitochondrial import re 98.2 2E-06 6.8E-11 67.4 5.3 96 410-507 15-133 (158)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.2E-05 4E-10 77.2 11.3 127 330-461 267-414 (457)
191 2xev_A YBGF; tetratricopeptide 98.1 4.2E-05 1.5E-09 58.6 11.6 91 367-461 7-104 (129)
192 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.8E-10 63.2 9.7 96 364-459 51-155 (164)
193 1klx_A Cysteine rich protein B 98.1 4.6E-05 1.6E-09 59.3 11.2 121 375-506 8-136 (138)
194 2hr2_A Hypothetical protein; a 98.0 9E-06 3.1E-10 63.8 6.2 52 465-516 57-119 (159)
195 3rkv_A Putative peptidylprolyl 98.0 5.3E-05 1.8E-09 60.9 11.0 99 364-464 13-129 (162)
196 2kat_A Uncharacterized protein 98.0 2.2E-05 7.5E-10 58.9 7.5 96 416-513 4-103 (115)
197 3ly7_A Transcriptional activat 97.9 0.00024 8.1E-09 64.1 14.5 144 361-507 193-351 (372)
198 1dce_A Protein (RAB geranylger 97.9 0.00013 4.5E-09 71.6 13.9 136 374-513 40-192 (567)
199 1ihg_A Cyclophilin 40; ppiase 97.9 7.9E-05 2.7E-09 69.0 11.3 91 332-424 224-334 (370)
200 3ma5_A Tetratricopeptide repea 97.8 2.9E-05 9.9E-10 56.6 5.8 84 431-514 5-92 (100)
201 3k9i_A BH0479 protein; putativ 97.8 3.7E-05 1.3E-09 57.9 6.3 60 364-425 29-89 (117)
202 2l6j_A TPR repeat-containing p 97.8 1.4E-05 4.7E-10 59.5 3.3 92 363-459 5-104 (111)
203 2kc7_A BFR218_protein; tetratr 97.7 8.5E-05 2.9E-09 53.8 6.9 64 439-502 6-72 (99)
204 3n71_A Histone lysine methyltr 97.7 0.0001 3.5E-09 70.6 9.0 123 372-494 319-464 (490)
205 1pc2_A Mitochondria fission pr 97.6 0.00021 7E-09 55.3 7.3 100 411-512 12-118 (152)
206 1klx_A Cysteine rich protein B 97.6 0.0013 4.4E-08 51.0 12.1 107 276-390 10-125 (138)
207 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00015 5E-09 53.1 6.2 76 433-508 5-89 (104)
208 2kat_A Uncharacterized protein 97.5 0.00013 4.4E-09 54.6 4.9 66 451-516 3-70 (115)
209 3n71_A Histone lysine methyltr 97.4 0.00024 8.3E-09 68.0 7.5 121 341-461 319-463 (490)
210 3bee_A Putative YFRE protein; 97.4 0.00087 3E-08 47.6 8.5 72 430-501 3-79 (93)
211 3ma5_A Tetratricopeptide repea 97.4 0.00036 1.2E-08 50.6 6.7 61 362-424 7-68 (100)
212 1na3_A Designed protein CTPR2; 97.4 0.0012 4.1E-08 46.4 9.2 77 364-444 11-88 (91)
213 3qww_A SET and MYND domain-con 97.4 0.00064 2.2E-08 63.9 9.2 95 410-504 311-426 (433)
214 1zu2_A Mitochondrial import re 97.4 5E-05 1.7E-09 59.5 1.4 70 444-513 13-94 (158)
215 2kc7_A BFR218_protein; tetratr 97.3 0.00013 4.3E-09 52.9 3.5 51 407-459 10-61 (99)
216 3qwp_A SET and MYND domain-con 97.3 0.0011 3.8E-08 62.4 10.5 101 404-504 294-415 (429)
217 1nzn_A CGI-135 protein, fissio 97.2 0.0052 1.8E-07 45.6 10.9 102 408-511 12-120 (126)
218 3mkq_A Coatomer beta'-subunit; 97.0 0.061 2.1E-06 55.6 21.1 152 172-354 607-759 (814)
219 3lvg_A Clathrin heavy chain 1; 97.0 8.8E-06 3E-10 74.6 -7.1 261 93-382 53-324 (624)
220 3lvg_A Clathrin heavy chain 1; 96.7 0.00079 2.7E-08 62.1 3.4 209 62-282 53-325 (624)
221 3mkq_B Coatomer subunit alpha; 96.7 0.13 4.4E-06 40.9 15.4 129 339-491 13-141 (177)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.6E-06 53.8 19.8 132 300-461 633-764 (814)
223 3ly7_A Transcriptional activat 96.5 0.043 1.5E-06 49.5 13.1 72 360-436 275-346 (372)
224 3qww_A SET and MYND domain-con 96.5 0.0065 2.2E-07 57.1 8.3 87 375-461 311-410 (433)
225 3bee_A Putative YFRE protein; 96.4 0.0049 1.7E-07 43.6 5.3 55 462-516 3-60 (93)
226 3qwp_A SET and MYND domain-con 96.3 0.014 4.6E-07 55.0 9.1 93 369-461 294-399 (429)
227 1qsa_A Protein (soluble lytic 96.1 1.2 4.2E-05 43.7 26.2 114 376-493 228-347 (618)
228 1pc2_A Mitochondria fission pr 95.8 0.077 2.6E-06 41.0 9.4 86 378-466 14-105 (152)
229 3mkq_B Coatomer subunit alpha; 95.6 0.29 9.8E-06 38.9 12.4 45 210-256 16-60 (177)
230 3o48_A Mitochondria fission 1 95.6 0.073 2.5E-06 39.6 8.2 82 430-511 37-124 (134)
231 4h7y_A Dual specificity protei 95.5 0.1 3.6E-06 39.7 9.0 114 90-206 9-135 (161)
232 3u64_A Protein TP_0956; tetrat 95.4 0.021 7.1E-07 49.4 5.7 76 379-459 180-266 (301)
233 1y8m_A FIS1; mitochondria, unk 95.4 0.16 5.5E-06 38.4 9.7 82 430-511 36-123 (144)
234 2v5f_A Prolyl 4-hydroxylase su 95.1 0.12 4.1E-06 37.3 8.2 62 364-425 7-74 (104)
235 4b4t_P 26S proteasome regulato 94.8 0.71 2.4E-05 43.5 14.7 158 203-360 141-324 (445)
236 4h7y_A Dual specificity protei 94.4 0.15 5.1E-06 38.9 7.0 102 399-503 15-132 (161)
237 1wy6_A Hypothetical protein ST 94.3 1.2 4.1E-05 33.2 14.6 137 271-429 17-156 (172)
238 4ady_A RPN2, 26S proteasome re 94.0 6.3 0.00022 40.5 25.2 250 238-492 382-656 (963)
239 3ffl_A Anaphase-promoting comp 93.5 0.41 1.4E-05 37.3 8.3 25 437-461 126-150 (167)
240 3u64_A Protein TP_0956; tetrat 93.2 0.32 1.1E-05 42.1 7.9 92 110-203 179-281 (301)
241 1nzn_A CGI-135 protein, fissio 93.0 0.26 8.9E-06 36.5 6.2 87 376-465 15-107 (126)
242 3ffl_A Anaphase-promoting comp 92.8 0.46 1.6E-05 37.1 7.5 134 366-510 24-166 (167)
243 1wy6_A Hypothetical protein ST 92.6 2.4 8.3E-05 31.7 14.5 63 432-494 90-154 (172)
244 4b4t_P 26S proteasome regulato 92.6 6.9 0.00024 36.8 21.2 97 364-460 139-245 (445)
245 4ady_A RPN2, 26S proteasome re 92.4 11 0.00039 38.8 24.1 26 166-191 232-257 (963)
246 3txn_A 26S proteasome regulato 92.2 5.7 0.00019 36.4 15.4 92 402-493 104-209 (394)
247 1qsa_A Protein (soluble lytic 91.1 12 0.00043 36.7 27.1 114 345-462 228-348 (618)
248 3lpz_A GET4 (YOR164C homolog); 90.9 8.2 0.00028 34.3 18.5 113 64-187 36-159 (336)
249 2wpv_A GET4, UPF0363 protein Y 90.8 8.1 0.00028 34.0 16.7 114 64-188 34-158 (312)
250 1zbp_A Hypothetical protein VP 90.8 1 3.6E-05 38.3 8.2 122 370-503 5-138 (273)
251 2uwj_G Type III export protein 90.0 3.6 0.00012 28.6 8.8 59 238-299 47-105 (115)
252 1v54_E Cytochrome C oxidase po 89.7 2.5 8.7E-05 29.6 7.9 63 377-441 25-87 (109)
253 4fhn_B Nucleoporin NUP120; pro 89.7 5.7 0.00019 42.7 14.9 210 302-519 818-1086(1139)
254 2p58_C Putative type III secre 89.6 3.8 0.00013 28.5 8.6 50 240-291 50-99 (116)
255 4gns_B Protein CSD3, chitin bi 89.0 1.8 6.2E-05 43.4 9.7 49 464-513 612-660 (754)
256 2wpv_A GET4, UPF0363 protein Y 88.3 13 0.00044 32.8 21.5 183 206-425 20-216 (312)
257 4gns_B Protein CSD3, chitin bi 88.0 1.7 5.7E-05 43.7 8.7 52 407-460 347-398 (754)
258 2ff4_A Probable regulatory pro 87.8 4.4 0.00015 37.3 11.1 69 366-436 175-248 (388)
259 3ltm_A Alpha-REP4; protein eng 87.2 11 0.00038 30.8 18.6 18 228-245 31-48 (211)
260 3ltm_A Alpha-REP4; protein eng 86.4 12 0.00042 30.5 17.6 46 200-245 96-141 (211)
261 3txn_A 26S proteasome regulato 86.0 21 0.0007 32.7 19.2 26 232-257 21-46 (394)
262 4fhn_B Nucleoporin NUP120; pro 85.9 5.6 0.00019 42.7 12.0 169 67-251 816-992 (1139)
263 1v54_E Cytochrome C oxidase po 85.0 4.8 0.00016 28.2 7.0 61 278-339 27-87 (109)
264 2y69_E Cytochrome C oxidase su 84.2 6.6 0.00022 29.2 7.9 63 377-441 68-130 (152)
265 2ff4_A Probable regulatory pro 82.9 8.8 0.0003 35.3 10.5 70 265-335 175-249 (388)
266 3ltj_A Alpharep-4; protein eng 82.7 17 0.00059 29.2 16.0 141 62-214 27-167 (201)
267 3o48_A Mitochondria fission 1 81.8 8 0.00027 28.8 7.7 72 392-466 35-112 (134)
268 4b4t_R RPN7, 26S proteasome re 81.2 5.2 0.00018 37.4 8.4 96 332-427 132-238 (429)
269 1y8m_A FIS1; mitochondria, unk 80.6 16 0.00054 27.6 9.0 69 394-465 36-110 (144)
270 3bqo_A Telomeric repeat-bindin 80.0 8.8 0.0003 30.6 7.7 65 449-513 94-165 (211)
271 3ltj_A Alpharep-4; protein eng 79.3 23 0.00079 28.5 18.9 35 226-260 24-58 (201)
272 3lpz_A GET4 (YOR164C homolog); 79.1 34 0.0012 30.3 23.6 183 206-425 19-215 (336)
273 2uwj_G Type III export protein 78.2 15 0.0005 25.6 8.6 78 43-124 21-98 (115)
274 1zbp_A Hypothetical protein VP 77.1 4.1 0.00014 34.7 5.6 53 406-460 6-58 (273)
275 2y69_E Cytochrome C oxidase su 73.4 25 0.00085 26.2 8.0 60 279-339 71-130 (152)
276 4b4t_S RPN3, 26S proteasome re 71.6 15 0.00052 34.8 8.5 68 433-500 231-305 (523)
277 4b4t_R RPN7, 26S proteasome re 71.4 35 0.0012 31.7 11.2 63 262-324 132-196 (429)
278 2p58_C Putative type III secre 70.9 24 0.00082 24.7 10.0 85 311-400 22-106 (116)
279 3esl_A Checkpoint serine/threo 65.2 53 0.0018 26.5 9.7 54 377-431 94-148 (202)
280 3esl_A Checkpoint serine/threo 63.0 48 0.0016 26.8 8.6 58 107-164 92-150 (202)
281 1oyz_A Hypothetical protein YI 62.7 72 0.0025 27.2 21.8 62 431-496 204-265 (280)
282 2ion_A PDCD4, programmed cell 55.9 28 0.00097 26.7 6.1 61 234-294 13-78 (152)
283 3eu9_A Huntingtin-interacting 55.9 65 0.0022 26.3 9.2 20 70-89 46-65 (240)
284 1wdy_A 2-5A-dependent ribonucl 52.8 1E+02 0.0035 25.9 12.2 21 69-89 8-28 (285)
285 2nsz_A Programmed cell death p 52.3 59 0.002 24.1 7.1 63 335-397 11-78 (129)
286 1k1a_A B-cell lymphoma 3-encod 49.8 1.1E+02 0.0036 25.1 12.2 22 104-125 16-37 (241)
287 2nsz_A Programmed cell death p 49.2 77 0.0026 23.4 8.8 62 234-295 11-77 (129)
288 1n11_A Ankyrin; clathrin, BAND 48.7 1.6E+02 0.0055 27.0 12.0 51 34-88 17-69 (437)
289 1k1a_A B-cell lymphoma 3-encod 48.6 1.1E+02 0.0038 25.0 10.3 55 34-88 12-68 (241)
290 2d2s_A Exocyst complex compone 47.6 63 0.0022 27.0 7.4 27 163-189 90-116 (235)
291 4a1g_A Mitotic checkpoint seri 47.6 92 0.0032 23.8 8.4 53 111-163 82-135 (152)
292 1oyz_A Hypothetical protein YI 47.3 1.3E+02 0.0045 25.5 22.6 18 162-179 140-157 (280)
293 2d2s_A Exocyst complex compone 46.7 87 0.003 26.1 8.1 23 267-289 24-46 (235)
294 3bu8_A Telomeric repeat-bindin 46.2 26 0.0009 28.4 4.5 38 474-511 123-160 (235)
295 1n11_A Ankyrin; clathrin, BAND 46.1 1.3E+02 0.0045 27.6 10.4 146 69-225 17-169 (437)
296 1ya0_A SMG-7 transcript varian 46.1 30 0.001 32.9 5.8 74 439-512 158-233 (497)
297 3bu8_A Telomeric repeat-bindin 45.8 75 0.0026 25.9 7.0 17 442-458 123-139 (235)
298 4a1g_A Mitotic checkpoint seri 45.7 1E+02 0.0034 23.6 8.5 52 380-432 83-135 (152)
299 2zu6_B Programmed cell death p 45.6 1.5E+02 0.0053 25.8 10.9 226 98-324 7-269 (307)
300 2ion_A PDCD4, programmed cell 44.2 54 0.0018 25.1 6.0 63 335-397 13-80 (152)
301 2qx5_A Nucleoporin NIC96; mRNA 43.8 2.5E+02 0.0086 27.8 18.3 79 206-287 301-382 (661)
302 1ug3_A EIF4GI, eukaryotic prot 43.6 1.2E+02 0.0041 27.0 9.1 25 332-356 142-166 (339)
303 3kea_A K1L; tropism, ANK repea 43.5 1.5E+02 0.0052 25.2 10.0 15 283-297 210-224 (285)
304 2w57_A Ferric uptake regulatio 43.0 79 0.0027 24.1 6.8 63 118-181 6-69 (150)
305 1mzb_A Ferric uptake regulatio 42.9 72 0.0025 23.7 6.5 62 119-181 8-70 (136)
306 4gq2_M Nucleoporin NUP120; bet 41.7 1.9E+02 0.0067 30.2 11.6 131 69-213 816-950 (950)
307 2fe3_A Peroxide operon regulat 41.4 73 0.0025 24.1 6.4 62 118-180 11-72 (145)
308 2xig_A Ferric uptake regulatio 41.1 91 0.0031 23.7 6.9 63 118-181 16-78 (150)
309 2cfu_A SDSA1; SDS-hydrolase, l 41.1 52 0.0018 32.7 6.8 63 449-514 436-498 (658)
310 1wdy_A 2-5A-dependent ribonucl 40.9 78 0.0027 26.7 7.5 20 170-189 8-27 (285)
311 3jxi_A Vanilloid receptor-rela 40.0 34 0.0012 28.8 4.9 26 103-128 11-36 (260)
312 2wvi_A Mitotic checkpoint seri 39.9 1.3E+02 0.0045 23.4 9.5 51 381-432 79-130 (164)
313 4aez_C MAD3, mitotic spindle c 39.1 1.6E+02 0.0055 24.2 8.5 54 111-164 131-185 (223)
314 2wvi_A Mitotic checkpoint seri 38.0 1.4E+02 0.0048 23.2 9.1 55 111-165 77-132 (164)
315 3ygs_P Procaspase 9; apoptosis 37.9 37 0.0013 23.6 3.8 63 49-113 25-87 (97)
316 3ygs_P Procaspase 9; apoptosis 37.8 37 0.0013 23.6 3.8 36 245-280 52-87 (97)
317 3kea_A K1L; tropism, ANK repea 36.5 1.8E+02 0.0062 24.7 9.1 15 210-224 103-117 (285)
318 2ijq_A Hypothetical protein; s 35.8 1.4E+02 0.0047 23.1 7.0 57 436-493 36-103 (161)
319 3eu9_A Huntingtin-interacting 35.4 1.8E+02 0.006 23.5 12.3 16 73-88 16-31 (240)
320 2bbr_A Viral CAsp8 and FADD-li 35.0 1.8E+02 0.006 23.4 7.8 39 112-151 135-173 (195)
321 2r9g_A AAA ATPase, central reg 34.9 1.8E+02 0.0061 23.5 9.7 55 373-429 25-84 (204)
322 2fe3_A Peroxide operon regulat 33.4 1E+02 0.0035 23.2 6.1 61 286-347 12-72 (145)
323 3jxi_A Vanilloid receptor-rela 33.3 50 0.0017 27.7 4.8 53 36-88 10-71 (260)
324 3eyy_A Putative iron uptake re 33.2 76 0.0026 24.0 5.3 60 119-180 9-68 (145)
325 3ljn_A Hypothetical protein; a 32.1 1.3E+02 0.0046 26.7 7.8 78 340-422 179-266 (364)
326 1mzb_A Ferric uptake regulatio 31.9 1.6E+02 0.0053 21.8 6.9 60 286-346 8-68 (136)
327 2w57_A Ferric uptake regulatio 31.8 1.7E+02 0.0057 22.2 7.3 62 285-347 6-68 (150)
328 4gq2_M Nucleoporin NUP120; bet 31.2 3.3E+02 0.011 28.5 11.2 127 236-376 816-950 (950)
329 3eiq_C Programmed cell death p 30.6 3E+02 0.01 24.7 13.5 239 66-313 57-305 (358)
330 3bge_A Predicted ATPase; struc 30.6 2.1E+02 0.0072 23.0 7.9 57 368-424 10-74 (201)
331 4b4t_S RPN3, 26S proteasome re 30.0 3.5E+02 0.012 25.7 10.0 60 231-290 232-299 (523)
332 2fu4_A Ferric uptake regulatio 29.2 1.2E+02 0.0042 19.8 7.1 60 286-346 7-67 (83)
333 3ctd_A Putative ATPase, AAA fa 29.1 2.3E+02 0.008 23.0 8.8 61 368-429 38-106 (213)
334 2b7e_A PRE-mRNA processing pro 29.1 35 0.0012 21.1 2.1 30 277-306 2-31 (59)
335 2xig_A Ferric uptake regulatio 28.9 1.5E+02 0.0051 22.5 6.3 61 286-347 17-77 (150)
336 2o03_A Probable zinc uptake re 28.3 1.2E+02 0.004 22.4 5.5 48 32-79 14-61 (131)
337 1bd8_A P19INK4D CDK4/6 inhibit 27.6 1.8E+02 0.0061 21.5 6.8 141 70-224 6-155 (156)
338 3ax2_A Mitochondrial import re 27.5 1.1E+02 0.0038 19.9 4.4 32 471-502 23-54 (73)
339 4ets_A Ferric uptake regulatio 27.5 1.6E+02 0.0054 22.7 6.3 68 278-346 14-84 (162)
340 2p1h_A APAF-1, apoptotic prote 27.4 1.5E+02 0.005 20.2 6.1 61 47-111 24-84 (94)
341 4ets_A Ferric uptake regulatio 27.0 1.2E+02 0.004 23.5 5.5 64 249-312 20-85 (162)
342 1wgl_A TOLL-interacting protei 25.6 1.2E+02 0.0042 18.6 4.4 23 176-198 35-57 (59)
343 2o03_A Probable zinc uptake re 23.4 1.4E+02 0.0049 21.9 5.2 44 267-310 16-59 (131)
344 3mwm_A ZUR, putative metal upt 23.3 1.2E+02 0.0041 22.7 4.8 48 32-79 17-64 (139)
345 2r9g_A AAA ATPase, central reg 22.6 3E+02 0.01 22.1 9.0 63 264-327 14-84 (204)
346 3mwm_A ZUR, putative metal upt 21.3 1.7E+02 0.0059 21.7 5.3 46 135-180 19-64 (139)
347 1g1e_B SIN3A; four-helix bundl 20.8 88 0.003 21.3 3.1 29 413-443 10-38 (89)
348 2p1h_A APAF-1, apoptotic prote 20.4 2.1E+02 0.0071 19.4 6.6 36 344-379 49-84 (94)
349 1oai_A Nuclear RNA export fact 20.1 66 0.0023 19.9 2.2 24 410-433 33-56 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-41 Score=343.74 Aligned_cols=446 Identities=12% Similarity=0.049 Sum_probs=347.5
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (520)
++...++.++..|.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|+.+|+++.. .+++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 3455555556666666666666665555532 4445555555566666666666666655543 23455555555556
Q ss_pred HhccCChhhHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC---------
Q 010031 139 VASLSLLSLGRGLHCLIVKS---------------GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------- 194 (520)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------- 194 (520)
+.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 66666666666555532111 112245556666666666666666666666555442
Q ss_pred ----------------------------CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHHHHHHhcC
Q 010031 195 ----------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKG 244 (520)
Q Consensus 195 ----------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 244 (520)
..+...+|+.++..|.+.|++++|..+|+++.+ ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 111222333445667788999999999999998 89999999999999999
Q ss_pred CHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 010031 245 DLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321 (520)
Q Consensus 245 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (520)
++++|.++|+++.+ .+..+|..++.+|.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999863 357889999999999999999999999998763 56788999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010031 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 398 (520)
+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 98764 34678999999999999999999999998754 477899999999999999999999999999853 33677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhc---CCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGAL 471 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 471 (520)
+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|++.++++.. +.+..+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999997532 55777 67999999999999999999999999765 4578899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..+|.+.|++++|.+.++++++++|+++.++..++.+|.+
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-41 Score=336.92 Aligned_cols=435 Identities=13% Similarity=0.033 Sum_probs=369.5
Q ss_pred HhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHH
Q 010031 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152 (520)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 152 (520)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888899999999999999999999999999986 5588889999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------CCCCCchhHHHHHHHHHhcCChhH
Q 010031 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK---------------NKSESVLLWNVLINGCSKIGYLRK 217 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~ 217 (520)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 98865 3578999999999999999999999999964332 234468899999999999999999
Q ss_pred HHHHHhhCCC--CC-HHHHHH--------------------------------------HHHHHHhcCCHHHHHHHHhcC
Q 010031 218 AVELFGMMPK--KN-VASWVS--------------------------------------LIDGFMRKGDLKKAGELFEQM 256 (520)
Q Consensus 218 a~~~~~~~~~--~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~ 256 (520)
|..+|+++.+ |+ ...+.. ++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999976 33 233222 245566789999999999999
Q ss_pred CC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH
Q 010031 257 PE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334 (520)
Q Consensus 257 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (520)
.+ ++..+|+.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 87 678899999999999999999999999999875 4477889999999999999999999999998664 4578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 411 (520)
..++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 9999999999999999999998764 467899999999999999999999999999853 336779999999999999
Q ss_pred cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-------CCC--HHHHHHHHHHHHHcCCHH
Q 010031 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-------TPD--FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 412 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~ 482 (520)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.. .|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998542 55688999999999999999999999998743 466 779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|...++++++.+|+++.++..++.+|...|+.+
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999854
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.6e-30 Score=245.70 Aligned_cols=375 Identities=12% Similarity=0.092 Sum_probs=272.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010031 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 101 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (520)
...+.+.|++++|.+.++.+.+. .|+.. .+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455666666666666666552 24333 33334445556666666666666665543 2345566666666666666
Q ss_pred hhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (520)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (520)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+ ..|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------~~p 132 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----------------------------YNP 132 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------HCT
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCC
Confidence 666666666655442 22334455555555555555555555544332 012
Q ss_pred C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 260 G-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 260 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
+ ...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|+++.|...++++.+.+. .+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 2 3455666667777777777777777777653 33456777777777777888888888877776652 3556677777
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHH
Q 010031 339 DMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 414 (520)
..+...|++++|...+++... .+..++..++.++...|++++|...|+++.+. .|+ ..++..+...+...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888776554 35678888999999999999999999999984 554 558999999999999999
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|.+.++++.+. .+.+..++..++.++.+.|++++|++.++++.. +.+..++..+..++.+.|++++|...+++++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 256778999999999999999999999999776 3457789999999999999999999999999
Q ss_pred cCCCCCcchhHHHHhhhhhccC
Q 010031 493 SLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 493 ~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+++|+++.++..++.++.+.|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999998875
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-27 Score=225.22 Aligned_cols=374 Identities=12% Similarity=0.063 Sum_probs=269.4
Q ss_pred HHHHHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 010031 69 LISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 145 (520)
+...+.+.|++++|.+.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455678899999999998764 3455677778888999999999999999988743 34667899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
++|...|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999865 2356689999999999999999999999988764 445566777778888888888888888766
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010031 226 PK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (520)
Q Consensus 226 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 303 (520)
.+ |+ +..+|..+...+...|++++|...|+++.+.+ +.+...+..+.
T Consensus 162 l~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 162 IETQPN------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp HHHCTT------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 53 21 12344444455555555555555555555542 22344555555
Q ss_pred HHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHH
Q 010031 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 380 (520)
..+...|++++|...+++..+... .+..++..+..+|...|++++|.+.|+++.+ .+..+|..++.++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555566666666666665554431 2345555666666666666666666665543 244567778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|...|+++.+. .+.+..++..+...+...|++++|.+.++++.+. .+.+..++..++.+|.+.|++++|++.++++.
T Consensus 290 A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 290 AEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888874 2335668888888888888888888888888742 24456678888888888888888888888865
Q ss_pred C-CC-CHHHHHHHHHHHHHcCC
Q 010031 461 E-TP-DFVIWGALFCACRTHKD 480 (520)
Q Consensus 461 ~-~~-~~~~~~~l~~~~~~~g~ 480 (520)
. .| +...|..+...+...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 4 34 46677777777666553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.9e-28 Score=233.60 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=173.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC---------hHHHHHHHHHHHHcCCCCChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA---------LEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 332 (520)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 408 (520)
+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998875 7999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
+.|++++|.+++++|. +.+..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 578999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=236.83 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=156.8
Q ss_pred HHHHHHHHHhCCCCCh-HHHHHHHHHHhcCCChHHHHHHhcccC----CCCcchHHHHHHHHHhCCC---------hhHH
Q 010031 48 RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSH---------FQSC 113 (520)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~---------~~~A 113 (520)
..+...+.+.+..+.+ .+++.+|++|++.|++++|+++|++|. +||..+||++|.+|++.+. .++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 4455555555554433 457777888888888888888888775 3778888888888876554 5778
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 193 (520)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhc
Q 010031 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRK 243 (520)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 243 (520)
|+.||..||+.||.+|++.|+.++|.+++++|.+ |+..||+.++..++..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998875 8899999988888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-26 Score=224.24 Aligned_cols=438 Identities=10% Similarity=-0.022 Sum_probs=297.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 010031 65 ITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142 (520)
Q Consensus 65 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (520)
.+......+.+.|++++|+..|+++.. |+...|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665532 455566666666666666666666666666532 12233555556666666
Q ss_pred CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHH---HhcCChhHHH
Q 010031 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAV 219 (520)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~ 219 (520)
|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+....... ........+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 666666666666665442 233333334444433333333333333322221111111111100000 0011111112
Q ss_pred HHHhhCCC---------C-CHHHHHHHHHHHHh---cCCHHHHHHHHhcCCC-----C------------CcccHHHHHH
Q 010031 220 ELFGMMPK---------K-NVASWVSLIDGFMR---KGDLKKAGELFEQMPE-----K------------GVVSWTAMIN 269 (520)
Q Consensus 220 ~~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~------------~~~~~~~l~~ 269 (520)
..+..... | +...+......+.. .|++++|...|+++.+ . +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 22222211 1 24444555555554 8999999999988654 1 1457888999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
.+...|++++|...|+++.... |+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999875 337888889999999999999999999998765 3467788899999999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
|...++.+.+ .+...+..++..+...|++++|...++++.+. .| +..++..+...+...|++++|...++++..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998654 35678899999999999999999999999884 34 456888899999999999999999999875
Q ss_pred hcCCCCC----hhHHHHHHHHHhc---cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 426 DYFIEPS----VKHHTVVVNLLSR---VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 426 ~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
...-.++ ...+..++.+|.+ .|++++|.+.++++.. +.+..++..+...+.+.|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4322222 3388899999999 9999999999998764 34677889999999999999999999999999999
Q ss_pred CCcchhHHHHhhh
Q 010031 497 SIPQAMSYCQTFM 509 (520)
Q Consensus 497 ~~~~~~~~l~~~~ 509 (520)
+++..+..+....
T Consensus 481 ~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 481 TMEEKLQAITFAE 493 (514)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9999887765543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.9e-24 Score=209.62 Aligned_cols=309 Identities=11% Similarity=0.045 Sum_probs=217.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 242 (520)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 34445555555555555555555555554432 334445555555555555555555555444330
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHh
Q 010031 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSA------------LSAC 306 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------~~~~ 306 (520)
...+..++..++.+|...|++++|...|+++.+. .|+. ..+..+ ...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344555555666666666666666665553 2222 233222 3346
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
...|+++.|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.+ .+..+|..++.++...|++++|..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77788888888888877654 34667777788888888888888888887654 466788889999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHH------------HHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhc
Q 010031 384 YFKKMMYSGTEPDGT-VFLAI------------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSR 445 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 445 (520)
.|+++.+ ..|+.. .+..+ ...+...|++++|...++++... .|+ ...+..++.++.+
T Consensus 233 ~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 233 EVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHH
Confidence 9999887 455544 44443 78889999999999999999863 444 3478889999999
Q ss_pred cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 446 VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.|++++|++.++++.. +.+...|..+..+|...|++++|...++++++++|+++.++..++.+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999764 44688999999999999999999999999999999999999999933
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.2e-24 Score=207.20 Aligned_cols=378 Identities=13% Similarity=-0.006 Sum_probs=263.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
.+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444422 2355678888899999999999999999999864 3578899999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH
Q 010031 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
+.+ +.+..++..+..++.+.|++++|...|+++.+ |+. ..+..++..+... .+.
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~ 147 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLR 147 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHH
Confidence 875 55688899999999999999999999999876 433 4555554442211 122
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
.+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 23344555566666666666665542 3345555556666666666666666666665443 234555666666666666
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTA------------MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-----GTVFLAILT 405 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~ 405 (520)
++++|...|+.+.. | +...+.. ++..+...|++++|...|+++.+ ..|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 66666666665543 2 2223333 37888899999999999999988 4555 347788888
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHH---------
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCA--------- 474 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~--------- 474 (520)
.+.+.|++++|...++++.+.. +.+...|..++.+|...|++++|.+.++++.. .| +...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 8999999999999999987532 44678889999999999999999999998755 34 45566666533
Q ss_pred ---HHHcC-----CHHHHHHHHHH-HhcCCCCCcc----------hhHHHHhhhhhccCCCc
Q 010031 475 ---CRTHK-----DTKIAKIALQS-SCSLNLSIPQ----------AMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 475 ---~~~~g-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 517 (520)
|...| +.+++.+.+++ +++..|++.. .+..++.+|...||+++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 66788899987 7788887543 56678889999998764
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.9e-24 Score=210.62 Aligned_cols=431 Identities=10% Similarity=0.019 Sum_probs=296.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 140 (520)
..+..+...+.+.|++++|+..|+++. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 444555566666677777777666543 2455666666677777777777777777766632 123445566666666
Q ss_pred ccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC--CCCCchhHHHHHHHHHhcCChhHH
Q 010031 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--KSESVLLWNVLINGCSKIGYLRKA 218 (520)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 218 (520)
..|++++|...++ .... .|+ .....+..+...+....|...++++.... ..+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777664 2221 122 11122334444455566666666655431 011112223344455566666666
Q ss_pred HHHHhhCCCCCHH---HHHHHHHHHHh--------cCCHHHHHHHHhcCCCCCc----------ccHHHHHHHHHhCCCh
Q 010031 219 VELFGMMPKKNVA---SWVSLIDGFMR--------KGDLKKAGELFEQMPEKGV----------VSWTAMINGFSQNGEA 277 (520)
Q Consensus 219 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~ 277 (520)
...+......+.. ....+...+.. .|++++|..+|+++.+.+. .++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 6666665552221 22333322222 2477888888887765332 2467777888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (520)
++|...|+++... .|+...+..+...+...|+++.|...++.+.+... .+..++..+..++...|++++|...++++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999986 45578888899999999999999999999987753 46788899999999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-
Q 010031 358 KE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS- 432 (520)
Q Consensus 358 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 432 (520)
.+ .+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.++++.+...-.++
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 65 35678999999999999999999999999885 34 4558888999999999999999999998753311222
Q ss_pred ---hhHHHHHHHHHhcc----------CChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 433 ---VKHHTVVVNLLSRV----------GQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 433 ---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
...+..+..+|.+. |++++|+..++++.. +.+...+..+..++...|++++|...+++++++.|+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 22244556777787 999999999998765 446788999999999999999999999999999999
Q ss_pred CcchhHHH
Q 010031 498 IPQAMSYC 505 (520)
Q Consensus 498 ~~~~~~~l 505 (520)
++......
T Consensus 495 ~~~~~~~~ 502 (537)
T 3fp2_A 495 MDEKLQAT 502 (537)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 88775543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-24 Score=213.62 Aligned_cols=413 Identities=11% Similarity=-0.029 Sum_probs=316.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (520)
...+......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456777889999999999999999999854 888899999999999999999999999999876 3467789999999
Q ss_pred HHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHH---HHHHHhcCCH
Q 010031 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSL---IDGFMRKGDL 246 (520)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~ 246 (520)
+...|++++|...|+++...+ +++......++..+........+...+..+.. |+...+... ..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988775 45566666666665554444444443322221 111111100 0111111112
Q ss_pred HHHHHHHhcCCC---------CC-cccHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCC--------CCHHHHH
Q 010031 247 KKAGELFEQMPE---------KG-VVSWTAMINGFSQ---NGEAEKALAMFFQMLD-----AGVR--------ANDFTVV 300 (520)
Q Consensus 247 ~~a~~~~~~~~~---------~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~ 300 (520)
..+...+..... ++ ...+......+.. .|++++|...|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222222222221 11 3344445555554 8999999999999988 3112 2345677
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 010031 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 377 (520)
.+...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 7888899999999999999999887644 88889999999999999999999998765 366789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
+++|...++++.+. .| +...+..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...+
T Consensus 320 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999985 44 45688889999999999999999999998642 445678899999999999999999999
Q ss_pred hhCCC-C---CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 457 NKMPE-T---PD----FVIWGALFCACRT---HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 457 ~~~~~-~---~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++.. . ++ ...+..+...+.. .|++++|...++++++..|+++.++..++.++...|+.+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 98764 1 22 3388899999999 999999999999999999999999999999999999854
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.6e-23 Score=204.70 Aligned_cols=409 Identities=12% Similarity=0.040 Sum_probs=317.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (520)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788899999999999999999999843 2356688888899999999999999999999976 3467889999999
Q ss_pred HHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC------CHHHHHHHHHHHHhcCCHH
Q 010031 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDLK 247 (520)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 247 (520)
+...|++++|...|+.+... |+ .....+..+...+....|...++++... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999744322 22 2222344555666678899988888761 1112344555667778888
Q ss_pred HHHHHHhcCCCCCcc---cHHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcc
Q 010031 248 KAGELFEQMPEKGVV---SWTAMINGFSQN--------GEAEKALAMFFQMLDAGVRAND-------FTVVSALSACAKV 309 (520)
Q Consensus 248 ~a~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~ 309 (520)
.+...+......+.. ....+...+... |++++|..+|+++.+.. +.+. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 888888777665543 333333333322 47899999999998753 2222 2466666778889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
|+++.|...++.+.+.. |+...+..+...+...|++++|...++.+.+ .+..+|..+...+...|++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998875 4478888999999999999999999998765 467789999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----
Q 010031 387 KMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---- 461 (520)
Q Consensus 387 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 461 (520)
++.+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|++.++++..
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99984 44 35688889999999999999999999998642 44567889999999999999999999998754
Q ss_pred CC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 TP----DFVIWGALFCACRTH----------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+ ....+.....++... |++++|...++++++.+|+++.++..++.++...|+.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 11 112244455667777 99999999999999999999999999999999999854
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.5e-21 Score=181.49 Aligned_cols=311 Identities=10% Similarity=0.023 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHHHHHHH
Q 010031 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVSLIDGF 240 (520)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 240 (520)
+..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+ | +...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------- 73 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------- 73 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--------
Confidence 3445556666666666666666666655542 33455555566666666666666666555443 2 3334
Q ss_pred HhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHH------------HHH
Q 010031 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA----NDFTVVS------------ALS 304 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~------------l~~ 304 (520)
+..+...+...|++++|...|+++.+. .| +...+.. ...
T Consensus 74 -----------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 74 -----------------------RLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp -----------------------HHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555443 22 1222222 245
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 381 (520)
.+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6677778888888887777654 34566777778888888888888888876654 3567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHH------------HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-h----hHHHHHHHHH
Q 010031 382 IQYFKKMMYSGTEPDGT-VFL------------AILTACWYSGQVKLALNFFDSMRFDYFIEPS-V----KHHTVVVNLL 443 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~-~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~ 443 (520)
...+++..+. .|+.. .+. .+...+...|++++|...++++.+.. |+ . ..+..+..+|
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHH
Confidence 9999988874 44433 332 23566889999999999999998643 43 2 2355688899
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+.|++++|++.++++.. +.++.+|..+...+...|++++|...++++++++|+++.+...++.+....+.
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999998765 34688999999999999999999999999999999999999999988876654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.1e-20 Score=173.06 Aligned_cols=281 Identities=13% Similarity=0.067 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 223455556666677777777777777777653 33556666677777777
Q ss_pred C-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 010031 310 G-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (520)
Q Consensus 310 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 385 (520)
| +++.|...++++.+.. +.+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7 7777777777777654 23456677777778888888888887776654 24566777888889999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-------CCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 386 KKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYF-------IEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 386 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+++.+. .| +...+..+...+...|++++|...++++..... .+....++..++.+|.+.|++++|++.++
T Consensus 183 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 183 SQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999884 44 456888888899999999999999998875321 13345688899999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh-hhccCCCc
Q 010031 458 KMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM-QQKGDGRT 517 (520)
Q Consensus 458 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 517 (520)
++.. +.+...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+.
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 8764 345778999999999999999999999999999999999999999988 67777653
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=8.7e-19 Score=171.37 Aligned_cols=350 Identities=12% Similarity=0.018 Sum_probs=209.6
Q ss_pred CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh----cCC
Q 010031 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGY 214 (520)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 214 (520)
+++++|...|+...+.| ++..+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 34444444444443322 23333334444444 444444444444433332 33333344444443 344
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-CcccHHHHHHHHHh----CCChhHHHHHH
Q 010031 215 LRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAMF 284 (520)
Q Consensus 215 ~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~ 284 (520)
+++|...|++..+ .+...+..+...|.. .++.++|.+.|++..+. +..++..+...|.. .+++++|..+|
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 4444444444333 233344444444444 45555555555554332 34455566666665 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhc
Q 010031 285 FQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGE 356 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 356 (520)
++..+.| +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|+.
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 7766654 34455555555553 567777777777766543 34455556666666 6777777777776
Q ss_pred CCC-CChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhc
Q 010031 357 TKE-KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDY 427 (520)
Q Consensus 357 ~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 427 (520)
..+ .+...+..+...+... +++++|...|++..+.| +...+..+...+...| ++++|.+++++..+ .
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~ 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C
Confidence 654 3555666677777766 78888888888887753 3455666666666545 77888888888774 2
Q ss_pred CCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCC---
Q 010031 428 FIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNL--- 496 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p--- 496 (520)
.++..+..+...|.. .+++++|.+.+++.....++..+..+...|.. .++.++|...|+++++..|
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 355667777777777 77888888888876655567777777777777 7888888888888888774
Q ss_pred CCcchhHHHHhhhhh
Q 010031 497 SIPQAMSYCQTFMQQ 511 (520)
Q Consensus 497 ~~~~~~~~l~~~~~~ 511 (520)
+++.+...++.++.+
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 477777777766554
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.9e-19 Score=167.41 Aligned_cols=322 Identities=13% Similarity=0.006 Sum_probs=234.8
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34567778888999999999999999998753 467899999999999999999999999988764 5567889999999
Q ss_pred HHhcCChhHHHHHHhhCCC--C---CH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHH
Q 010031 209 CSKIGYLRKAVELFGMMPK--K---NV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~--~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
+...|++++|...++++.+ | +. ..+..+...+. + ..+..+...+...|++++|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999877 4 22 22333321111 0 123334556666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K 360 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 360 (520)
.++++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++...+ |
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777766653 3455666666666777777777777777766553 34556666677777777777777777766544 2
Q ss_pred -ChhHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCcHHHHHHHHHH
Q 010031 361 -DLLTWT------------AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 361 -~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
+...+. .++..+...|++++|...++++.+. .|+.. .+..+...+...|++++|.+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 222222 3366788999999999999999884 34432 345577788999999999999999
Q ss_pred cHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHH
Q 010031 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRT 477 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~ 477 (520)
+.+.. +.+...+..++.+|.+.|++++|.+.++++.. .|+ ...+..+..+...
T Consensus 298 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 298 VLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 98532 44677889999999999999999999998765 444 5566666665443
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.5e-16 Score=163.02 Aligned_cols=339 Identities=12% Similarity=0.041 Sum_probs=270.3
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
-.....++|...|.+.++.+++++..-.+ +..+....+.++....+. +..+..+..++.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 34557788888899999999999888432 112345666677766666 556666666655422 1 3347778
Q ss_pred HHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 010031 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 288 (520)
+...|.+++|..+|++... .....+.++ ...+++++|.++.+++.. ..+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8889999999999999863 222223332 277889999999987743 568899999999999999999999653
Q ss_pred HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 010031 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368 (520)
Q Consensus 289 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 368 (520)
-|...|..++.++.+.|+++++.+++....+.. +++...+.++.+|.+.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 467788899999999999999999999888765 44444556999999999999755554 34566778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 99999999999999999985 378999999999999999999998863 34788889999999999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+..|......+.. ++..+..++..|.+.|.+++|+.+++.+++++|.+...+..++.+|.+.
T Consensus 1266 f~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1266 FRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 9999998876543 5667778999999999999999999999999999999999999988764
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.1e-17 Score=165.22 Aligned_cols=420 Identities=12% Similarity=0.070 Sum_probs=287.6
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 010031 51 HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (520)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 127 (520)
++..++.. +-+...+..++. +.+.|+++.|..+|+++.. .+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444443 346778888887 4778999999999998754 35567888999999999999999999999874 36
Q ss_pred CcccHHHHHHHH-hccCChhhHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChhHHHHHhccCC
Q 010031 128 NRLTYPFVSKSV-ASLSLLSLGRG----LHCLIVKS-GVEY-DAFVRVHLADMYVQ---------LGKTRGAFKVFDETP 191 (520)
Q Consensus 128 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 191 (520)
+...|...+... ...|+.+.|.+ +|+...+. |..| +...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666655433 34577777665 66666554 4433 45677777776654 688899999998887
Q ss_pred CCCCCCC--chhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhc-------CC-----
Q 010031 192 EKNKSES--VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-------MP----- 257 (520)
Q Consensus 192 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~----- 257 (520)
+. +.+ ...|..........|. ..+..++.. +.++++.|..++.. +.
T Consensus 158 ~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 158 VN--PMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp TS--CCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred hc--hhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 73 221 1233322221111111 111111111 12333444433332 11
Q ss_pred -CCC--------cccHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-------cCChH
Q 010031 258 -EKG--------VVSWTAMINGFSQN----GEA----EKALAMFFQMLDAGVRANDFTVVSALSACAK-------VGALE 313 (520)
Q Consensus 258 -~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~~ 313 (520)
.++ ...|...+...... ++. .++..+|++.+... +-++..|......+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 111 13454444433332 232 37788899988763 4466777777777664 68887
Q ss_pred -------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch-hHHHHHHHHHHHcCCHHHHH
Q 010031 314 -------AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DL-LTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 314 -------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~ 382 (520)
.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8999999988632344678889999999999999999999998765 3 33 47888899889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH-HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 383 QYFKKMMYSGTEPD-GTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 383 ~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
.+|++..+. .|+ ...|...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 999999884 333 3333332222 335899999999999988643 4457889999999999999999999999875
Q ss_pred C----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 461 E----TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 461 ~----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
. +|+ ...|...+......|+.+.+..+.+++++..|+++
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 4 222 34888888888899999999999999999988533
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.7e-19 Score=166.73 Aligned_cols=269 Identities=10% Similarity=-0.045 Sum_probs=194.4
Q ss_pred cCCHHHHHH-HHhcCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 243 KGDLKKAGE-LFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 243 ~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
.|++++|.. .|++.... +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355566655 55543321 13456666666777777777777777766653 3455566666666677777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHH---------------HHHHHHHcC
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTA---------------MIWGLAIHG 376 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 376 (520)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777666654 23556666666777777777777777665543 1 1111110 133334889
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
++++|...++++.+. .|+ ..++..+...+...|++++|...++++.... +.+...+..++.+|.+.|++++|+
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999984 454 6789999999999999999999999998532 445778999999999999999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC-----------cchhHHHHhhhhhccCCCc
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI-----------PQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 517 (520)
+.++++.. +.+...+..+..++.+.|++++|...+++++++.|++ +.++..++.++...|+.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99998764 4467889999999999999999999999999999988 8899999999999998763
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3e-18 Score=158.51 Aligned_cols=281 Identities=10% Similarity=0.005 Sum_probs=186.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHH
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 271 (520)
+...+..+...+...|++++|..+++++.+ .+...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 334444444444444445544444444433 1222333344444455555555555544432 2345566666667
Q ss_pred HhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 272 SQNG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 272 ~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
...| ++++|...|+++.... +.+...+..+...+...|++++|...++.+.+... .+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHH
Confidence 7777 6777777777776643 33455666677777777777777777777766543 2445556677777778888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010031 351 SLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--------TEPDGTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 351 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.+.++++.+ .+...+..++..+...|++++|...++++.+.. ...+..++..+...+...|++++|...
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 877776654 355678888888889999999999998887631 123346888888999999999999999
Q ss_pred HHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHH-HHcCCHH
Q 010031 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCAC-RTHKDTK 482 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~g~~~ 482 (520)
++++.+.. +.+...+..+..+|.+.|++++|.+.++++.. .| +...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99987532 44567888999999999999999999999876 34 567777777776 4566654
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=8.4e-19 Score=161.30 Aligned_cols=375 Identities=12% Similarity=0.107 Sum_probs=174.9
Q ss_pred cCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHH
Q 010031 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154 (520)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 154 (520)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567899999999988655 48999999999999999999999653 6777889999999999999999998877
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHH
Q 010031 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 234 (520)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7763 3567788889999999999999888775 356679999999999999999999999977 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 3788999999999999999999655443 22333445568888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhcCCC-C-------ChhHHHHHHHHHHHcCCHHHHHHH
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKC--GNIEAASLVFGETKE-K-------DLLTWTAMIWGLAIHGRYEQAIQY 384 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~ 384 (520)
+..+++...... +-....|+-+.-+|++- ++..+..+.|..-.. | +...|.-+...|...++++.|...
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 999999887665 55677788777777653 455666666654333 2 456899999999999999988764
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC----
Q 010031 385 FKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM---- 459 (520)
Q Consensus 385 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 459 (520)
|.+. ...-+...|.-++.--....-+-+|+.++= .. .|. ..+.|+.++...=+...+.+++++.
T Consensus 305 ---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 305 ---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp ---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred ---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 4442 122233333333322222222223333322 11 232 2344555554444455555555443
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 460 ---------PETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 460 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
....+..+-.++-..|....|++.-....+.
T Consensus 374 l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 374 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3333444555666668888888776655553
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5.6e-19 Score=162.46 Aligned_cols=384 Identities=9% Similarity=0.036 Sum_probs=183.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHH
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 113 (520)
+-.++..+|+++.|.++++++ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHH
Confidence 334556788999999999887 23458999999999999999999999764 6777999999999999999999
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 193 (520)
+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777663 3567788889999999999999988885 377789999999999999999999999977
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010031 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273 (520)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 273 (520)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ........++..|.+
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 479999999999999999999999994 89999999999999999999988777655 333345568899999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--cCChHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcC
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGL------KGAIGTALVDMYAKCG 345 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 345 (520)
.|++++|+.+++..+... +-....|+.+.-+|++ .+++.+..+.|.. +.++++ +...|..++..|...+
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988654 4455666666655554 4445555554432 122222 4678889999999999
Q ss_pred CHHHHHHHHhcCCC---------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010031 346 NIEAASLVFGETKE---------------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (520)
Q Consensus 346 ~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 410 (520)
+++.|....-+-.. .|...|...+..|.. .....+.-+.......+.| +..+..+.+.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH-----TRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----HHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----HHHHHHHHHc
Confidence 99999876655432 244555555555552 1122222222222211222 2233444556
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|++.-+..++..+.. ..+..+-.++-..|...++++.-..-++.-.
T Consensus 370 ~~l~l~~~yl~~v~~----~n~~~vnealn~l~ieeed~~~lr~si~~~~ 415 (449)
T 1b89_A 370 KQLPLVKPYLRSVQN----HNNKSVNESLNNLFITEEDYQALRTSIDAYD 415 (449)
T ss_dssp TCTTTTHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 666666666666552 2333444566677777777776666655443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=6.9e-18 Score=152.18 Aligned_cols=255 Identities=12% Similarity=-0.001 Sum_probs=196.1
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 010031 240 FMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (520)
....|++..|+..++.....+. .....+.++|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666666666665544331 2334556777777777777765543 1355666777777788888888888
Q ss_pred HHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 316 VRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 316 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
.+.++++...+..| +...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888887765433 455666777889999999999999988 457788999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 395 PDGTVF---LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 395 p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++.. +.++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664321 22334445569999999999999865 366788999999999999999999999999765 44678999
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHhcCCCCCcchhHH
Q 010031 470 ALFCACRTHKDTKI-AKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 470 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++..+...|+.++ +.++++++++++|++|.+...
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999865 678999999999999987654
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=5.3e-17 Score=158.71 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh----cCChhHHH
Q 010031 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAV 219 (520)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 219 (520)
+...+....+. .++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445544443 467788888888888 899999999999887765 67788889999998 89999999
Q ss_pred HHHhhCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-cccHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 010031 220 ELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG-VVSWTAMINGFSQ----NGEAEKALAMFFQMLD 289 (520)
Q Consensus 220 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 289 (520)
..|++..+ .+...+..|...|.. .+++++|.++|++..+.+ ..++..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99998876 567788888888888 889999999999876654 5678888888887 8899999999999998
Q ss_pred cCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-C
Q 010031 290 AGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-K 360 (520)
Q Consensus 290 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~ 360 (520)
.| +...+..+...|.. .++.++|...+++..+.+ ++..+..+...|.. .+++++|...|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 75 56777777777776 899999999999998865 56677788888886 8899999999998765 5
Q ss_pred ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHcHhhcCCCC
Q 010031 361 DLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-----GQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 361 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~ 431 (520)
+...+..+...+.. .+++++|...|++..+.| +...+..+...+... +++++|...+++..+ . -
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---C
Confidence 66778888888888 899999999999998754 455777777777776 899999999999885 2 3
Q ss_pred ChhHHHHHHHHHhccC---ChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 432 SVKHHTVVVNLLSRVG---QVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
+...+..+...|.+.| ++++|++.+++.....++..+..+...|.. .+++++|...++++.+. .++.++..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence 4567778888888766 789999999998766788899999999988 89999999999999886 46899999
Q ss_pred HHhhhhh
Q 010031 505 CQTFMQQ 511 (520)
Q Consensus 505 l~~~~~~ 511 (520)
+|.+|..
T Consensus 405 Lg~~y~~ 411 (490)
T 2xm6_A 405 LGEIYYY 411 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999987
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.8e-17 Score=161.39 Aligned_cols=397 Identities=11% Similarity=0.019 Sum_probs=270.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (520)
.+...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|++++|..+|++.++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 46677888887 47788888888888888873 34 44467777888888888888888888888753 566677766
Q ss_pred HHHH-HhcCChhHHHH----HhccCCC-CCCC-CCchhHHHHHHHHHh---------cCChhHHHHHHhhCCC-CCH---
Q 010031 171 ADMY-VQLGKTRGAFK----VFDETPE-KNKS-ESVLLWNVLINGCSK---------IGYLRKAVELFGMMPK-KNV--- 230 (520)
Q Consensus 171 ~~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~--- 230 (520)
+... ...|+.+.|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++..+ |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 35677776665 5655432 2322 345566666665544 5677778888877765 322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH------HcC---CCCCH-----
Q 010031 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML------DAG---VRAND----- 296 (520)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~----- 296 (520)
..|..........|. ..+..++.+ ..+++..|..++.++. +.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222222221111111 111111111 2345666776666532 111 24431
Q ss_pred ---HHHHHHHHHhhc----cCCh----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHH
Q 010031 297 ---FTVVSALSACAK----VGAL----EAGVRVHNYISCNDFGLKGAIGTALVDMYAK-------CGNIE-------AAS 351 (520)
Q Consensus 297 ---~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~ 351 (520)
..|...+..... .++. ..+..+|+++.... +.++..|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 334333322221 1233 36778898888764 4577888888888875 79987 899
Q ss_pred HHHhcCCC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 352 LVFGETKE---K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 352 ~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.++++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998764 3 567899999999999999999999999998 46653 4788888888899999999999999985
Q ss_pred hcCCCCChhHHHHHHHH-HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc--
Q 010031 426 DYFIEPSVKHHTVVVNL-LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ-- 500 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 500 (520)
.. +.+...|...+.. +...|+.++|.++|++... +.++..|..++..+.+.|+.++|..+|+++++..|.+|.
T Consensus 385 ~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 DA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp CT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred cc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 32 2233344333322 3368999999999998765 346889999999999999999999999999999887776
Q ss_pred --hhHHHHhhhhhccCCC
Q 010031 501 --AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 --~~~~l~~~~~~~g~~~ 516 (520)
.|.....+....|+.+
T Consensus 463 ~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 7777777888888754
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=9.8e-16 Score=157.17 Aligned_cols=402 Identities=10% Similarity=0.097 Sum_probs=278.6
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTP-K-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 135 (520)
++.--...+..|...|...+|+++++++.- + +....+.++...++. +..+..+..++... ....-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 344445677777788888888888887652 2 234555566666665 44555555555432 113335
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
...+...|.+++|..+|++.. ......+.++ -..+++++|.++.++.. ++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 666777888888888888752 1112222222 26678888888887653 467888888888888888
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 010031 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 293 (520)
++|...|.+. .|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. + .
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 8888888665 4667777788888888888888888876543 23334445888888888877533332 2 4
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 010031 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373 (520)
Q Consensus 294 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 373 (520)
++...+..+...|...|+++.|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 45566777888888888888888888774 36778888888888888888888876 45577888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhc--cCChH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR--VGQVD 450 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~ 450 (520)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++.... +.+ ....|.-+..+|++ -++..
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888888776553 333556677888889999999999999987763 333 34567667666665 45677
Q ss_pred HHHHHHhhCCC-C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CCCCcchhHHHHhhhhh
Q 010031 451 KALNFINKMPE-T------PDFVIWGALFCACRTHKDTKIAKIALQSSCSL------------NLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 451 ~A~~~~~~~~~-~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~ 511 (520)
++.+.|..-.. + -+...|..+...|.+.|+++.|....-+-... .+.|+..+.....+|.+
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 77777765433 2 35678999999999999999998444333222 67788888888888875
Q ss_pred cc
Q 010031 512 KG 513 (520)
Q Consensus 512 ~g 513 (520)
.+
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 54
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.6e-18 Score=162.96 Aligned_cols=252 Identities=9% Similarity=-0.081 Sum_probs=187.0
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666677777777777777777776653 3455666677777777777777777777776654 2345666777777
Q ss_pred HHhcCCHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKEKD-------------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTA 406 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~ 406 (520)
|...|++++|...++++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777776665411 123344577888899999999999999985322 147789999999
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
+...|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|++.++++.. +.+..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998642 45678899999999999999999999998765 34578899999999999999999
Q ss_pred HHHHHHHhcCCCC------------CcchhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLS------------IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 516 (520)
...+++++++.|+ +...+..++.++...|+.+
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999887 4778999999999888754
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.5e-18 Score=163.18 Aligned_cols=297 Identities=13% Similarity=0.021 Sum_probs=168.3
Q ss_pred HHHhcCChhHHHH-HhccCCCCCC---CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCC
Q 010031 173 MYVQLGKTRGAFK-VFDETPEKNK---SESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 173 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 245 (520)
.+...|++++|.. .+++...... ..+...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4455566666666 6665443311 11244556666666666666666666666544 233445555555555555
Q ss_pred HHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 010031 246 LKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (520)
Q Consensus 246 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (520)
+++|...|+++.+ .+..++..+...|...|++++|...++++..... .+...+... +...
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~-------~~~~--------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPA-------EEGA--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH-------HHHh---------
Confidence 5555555554432 1234445555555555555555555555554321 111111000 0000
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-D 396 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~ 396 (520)
+.......+..+...+ ..|++++|...++++.+ | +..++..++..+...|++++|...++++.+. .| +
T Consensus 177 ---~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 250 (368)
T 1fch_A 177 ---GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ---hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCC
Confidence 0000000000122223 66777777777776654 2 3567777888888888888888888888774 34 3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCC----------
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPD---------- 464 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---------- 464 (520)
..++..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...++++.. +.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 5577888888888888888888888877532 34466778888888888888888888877654 112
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 465 -FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 465 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+|..+..++...|++++|..++++.++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 577888888888888888888888776653
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.6e-18 Score=158.68 Aligned_cols=260 Identities=11% Similarity=-0.002 Sum_probs=150.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHH
Q 010031 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMING 270 (520)
Q Consensus 197 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 270 (520)
.+...+..+...+.+.|++++|..+|+++.+ .+..++..+...+...|++++|...|+++.+ .+..+|..+...
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3556677788888888888888888877765 3455666666666667777776666666543 234566666666
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRAND-----------FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
|...|++++|...|+++.+.. |+. ..+..+...+...|++++|...++++.+.....
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 210 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM---------- 210 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS----------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc----------
Confidence 677777777777776666532 211 111222344444555555555555544432110
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHH
Q 010031 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
.+..++..++..+...|++++|+..|+++.+. .| +..++..+..++...|++++|..
T Consensus 211 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 211 --------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 13445555666666666666666666666653 23 34466666666666666666666
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-------------CHHHHHHHHHHHHHcCCHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-------------DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~~~~~~l~~~~~~~g~~~~A 484 (520)
.++++.+.. +.+...+..+..+|.+.|++++|.+.++++.. .| +..+|..+..++...|+.+.+
T Consensus 269 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 666665421 23355666666666666666666666666543 11 245667777777777777776
Q ss_pred HHHHHHHh
Q 010031 485 KIALQSSC 492 (520)
Q Consensus 485 ~~~~~~~~ 492 (520)
..+.++.+
T Consensus 347 ~~~~~~~l 354 (365)
T 4eqf_A 347 QAANLGDL 354 (365)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhhH
Confidence 66655543
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3e-17 Score=159.96 Aligned_cols=385 Identities=12% Similarity=0.007 Sum_probs=211.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhC-----C--CCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhC---C-
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-----S--VRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG---V- 160 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~- 160 (520)
....||.+...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888889999999888876542 1 123 23467778888888888888888888776531 0
Q ss_pred --C-CChhHHHHHHHHHHhc--CChhHHHHHhccCCCCCCCCCchhHHHHHHHH---HhcCChhHHHHHHhhCCC---CC
Q 010031 161 --E-YDAFVRVHLADMYVQL--GKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPK---KN 229 (520)
Q Consensus 161 --~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~---~~ 229 (520)
. ....++..+..++... +++++|+..|++..+.. |.++..+..+..++ ...++.++|+..+++..+ .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1234555555444443 46778888888776653 33444454444443 345666677777666554 23
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 230 VASWVSLIDGFMR----KGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 230 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
...+..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4444444433333 3456666666665432 234456666677777777777777777766642 2233444444
Q ss_pred HHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH
Q 010031 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE 379 (520)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 379 (520)
..+|...+... ..... ..........+.++.|...++...+ .+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 43332111000 00000 0000011112235666666665543 35567888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 380 QAIQYFKKMMYSGTEPDGT--VFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
+|+..|++..+....|... .+..+.. .....|++++|+..+++..+ +.|+........ ..+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333222 2333332 24578999999999999875 456543322222 2334444
Q ss_pred hhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 457 NKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 457 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
++... +.++.+|..+..++...|++++|++.|++++++.|.+|.+..++|.
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 44322 4467799999999999999999999999999999999999988773
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4.7e-17 Score=150.23 Aligned_cols=250 Identities=10% Similarity=-0.068 Sum_probs=190.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 455666667777777777777777776653 3355666666677777777777777777776654 23556666677777
Q ss_pred HhcCCHHHHHHHHhcCCC--C-ChhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K-DLLTWTAM--------------IW-GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 403 (520)
...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766543 1 22222222 22 3667789999999999998853 2256789999
Q ss_pred HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010031 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT 481 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 481 (520)
...+...|++++|.+.++++.+.. +.+...+..++.+|.+.|++++|.+.++++.. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999998532 44577889999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNLS------------IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++..|+ ++..+..++.++...|+.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999 7899999999999999854
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.4e-17 Score=143.77 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=194.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC--C----hhHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--K----GAIGT 335 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 335 (520)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356677888888889999999998888876 677888888888888999999999888877643211 1 56778
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCc
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQ 412 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 412 (520)
.+..+|...|++++|...++++.+ |+ ...+...|++++|...++++.. ..|+.. .+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 888889999999999998887765 33 2456677889999999999988 455544 78888889999999
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
+++|...++++.... +.+...+..++.+|.+.|++++|++.++++.. +.+...|..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998543 45677899999999999999999999998765 44578899999999999999999999999
Q ss_pred HhcCC------CCCcchhHHHHhhh
Q 010031 491 SCSLN------LSIPQAMSYCQTFM 509 (520)
Q Consensus 491 ~~~~~------p~~~~~~~~l~~~~ 509 (520)
++++. |++...+..+..++
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999 99988888877654
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.2e-17 Score=152.40 Aligned_cols=274 Identities=12% Similarity=0.015 Sum_probs=161.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHH
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 271 (520)
+...+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344556666777777777777777766654 2344555555555555555555555555432 1234455555555
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCCHHH
Q 010031 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL-VD-MYAKCGNIEA 349 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 349 (520)
...|++++|...++++.... +.+...+..+...+ ++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 55555555555555555432 11111111110000 000000001 11 2445556666
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
|...++++.+ .+...+..++..+...|++++|...++++.+. .| +..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666655443 24556677777777778888888888777764 33 355777777778888888888888887764
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-------------DFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.. +.+...+..+..+|.+.|++++|.+.++++.. .| +...|..+..++...|++++|..+++++
T Consensus 235 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 32 33466777788888888888888888877644 22 3567777888888888888888888877
Q ss_pred hcCCCCC
Q 010031 492 CSLNLSI 498 (520)
Q Consensus 492 ~~~~p~~ 498 (520)
++..|++
T Consensus 313 l~~~~~~ 319 (327)
T 3cv0_A 313 VEPFAKE 319 (327)
T ss_dssp SHHHHHH
T ss_pred HHhcchh
Confidence 7665543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.7e-16 Score=138.78 Aligned_cols=266 Identities=10% Similarity=0.040 Sum_probs=168.4
Q ss_pred HHHhcCChhHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (520)
-....|++..|+..++.....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456666666666666554221 23344556667777777777666554333445666666777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 010031 284 FFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K 360 (520)
Q Consensus 284 ~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 360 (520)
++++...+..|+ ...+..+...+...|++++|...+++ +.+...+..++.+|.+.|++++|.+.++.+.+ |
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 777776654443 34444555667777777777777765 35666677777777777777777777777654 3
Q ss_pred ChhHHHHHH----HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMI----WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
+.. ...+. ..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|.+.++++.+.. +-+..++
T Consensus 162 ~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l 237 (291)
T 3mkr_A 162 DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETL 237 (291)
T ss_dssp TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 321 22222 2233347888888888888875 23456678888888888888888888888877532 3456677
Q ss_pred HHHHHHHhccCChHH-HHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 437 TVVVNLLSRVGQVDK-ALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~-A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..++.++...|+.++ +.++++++.. .|+.... .....+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHHHH
Confidence 888888888888865 5677777654 4443321 222344444454443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.7e-15 Score=147.56 Aligned_cols=339 Identities=12% Similarity=-0.000 Sum_probs=213.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCC--------CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEK--------NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------- 227 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 227 (520)
....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557889999999999999999999875431 1133456788888999999999999888876543
Q ss_pred ----CCHHHHHHHHHHHHh--cCCHHHHHHHHhcCCC--CC-cccHHHHHHH---HHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 228 ----KNVASWVSLIDGFMR--KGDLKKAGELFEQMPE--KG-VVSWTAMING---FSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 228 ----~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
....++..+..++.. .+++++|...|++..+ |+ ...+..+..+ +...++.++|++.+++.++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 123455555545444 3467888888887653 22 3344444333 445677778888888777653 334
Q ss_pred HHHHHHHHHHhh----ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHH
Q 010031 296 DFTVVSALSACA----KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAM 368 (520)
Q Consensus 296 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 368 (520)
...+..+...+. ..++++.|...+++..... +.+..++..+...|...|++++|...+++..+ | +..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 444444443333 3456777888888777654 34566677788888888888888888877654 3 44566666
Q ss_pred HHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 369 IWGLAIH-------------------GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 369 ~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
..+|... +.++.|...+++..+. .|+. .++..+...+...|++++|.+.|++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 6666432 2245566666666653 3433 36666777777777777777777777642
Q ss_pred CCCChh----HHHHHHH-HHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 429 IEPSVK----HHTVVVN-LLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 429 ~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.|+.. .+..+.. .+...|++++|+..+++... .|+...+. +....+.+++++.++.+|+++.++
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 23321 2222322 23456777777777776543 34332221 122345566677777889999999
Q ss_pred HHHHhhhhhccCCCc
Q 010031 503 SYCQTFMQQKGDGRT 517 (520)
Q Consensus 503 ~~l~~~~~~~g~~~~ 517 (520)
..+|.+|...|+.+.
T Consensus 434 ~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCHHH
Confidence 999999999998664
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3e-16 Score=140.71 Aligned_cols=246 Identities=12% Similarity=0.013 Sum_probs=162.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVDMY 341 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 341 (520)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+..+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445566666777777777777766643 22333556666666677777777777776665321111 12356667777
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 417 (520)
...|++++|.+.+++..+ .+..+|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766554 34567777777788888888888888777763 443 345555552444456888888
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC----CCC------HHHHHHHHHHHHHcCCHHHH
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE----TPD------FVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~g~~~~A 484 (520)
+.++++.+.. +.+...+..+..++...|+ +++|...++++.. .|+ ...|..+...+...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888877532 3335666777777777777 7777777776543 233 24677788889999999999
Q ss_pred HHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
...++++++++|+++.+...++.+....+.
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 999999999999999999999888776553
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3e-18 Score=170.16 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=100.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhh---CCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
.+||++|.+|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4788888888888888888888877654 4788888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCh-hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC
Q 010031 172 DMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (520)
Q Consensus 172 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 213 (520)
.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 888888874 678888888888888888888888887666543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.3e-15 Score=131.26 Aligned_cols=186 Identities=13% Similarity=-0.004 Sum_probs=148.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010031 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAI 403 (520)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 403 (520)
++++..+..+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..|++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 35566777777888888888888888887655 3567788888888999999999999999888 4564 4478888
Q ss_pred HHHHHcc-----------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHH
Q 010031 404 LTACWYS-----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGAL 471 (520)
Q Consensus 404 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 471 (520)
...+... |++++|+..+++..+.. +.+...+..+..+|...|++++|+..++++.. ..++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 99999999999988532 33467888899999999999999999988643 3567888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
..++...|++++|+..++++++++|+++.++..++.++.+.|+.+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999999999999999999999998664
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=163.45 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 134 (520)
-..+|+++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-CCCCchhHHHHHHHHHhc
Q 010031 135 VSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-KSESVLLWNVLINGCSKI 212 (520)
Q Consensus 135 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 212 (520)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.-.. .+|...+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 7899999999999999999999999987776554444444433333211 112245555666666665
Q ss_pred C
Q 010031 213 G 213 (520)
Q Consensus 213 g 213 (520)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=4.5e-15 Score=138.27 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=196.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
..|..+...+...|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++... .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 356777777888888888888888888763 3456677777778888886 8888888888887653 467778888888
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc-cCcHHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY-SGQVKL 415 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~ 415 (520)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888887765 46778999999999999999999999999984 554 5588888888888 666577
Q ss_pred H-----HHHHHHcHhhcCCCCChhHHHHHHHHHhccC--ChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC--------
Q 010031 416 A-----LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QVDKALNFINKMPET-PDFVIWGALFCACRTHK-------- 479 (520)
Q Consensus 416 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g-------- 479 (520)
| ++.+++..... +-+...|..+..+|.+.| ++++|++.+.++... .+...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 58888887532 334678889999999988 689999999888333 45678888888888864
Q ss_pred C-HHHHHHHHHHH-hcCCCCCcchhHHHHhhhhhc
Q 010031 480 D-TKIAKIALQSS-CSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 480 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999999988754
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.5e-14 Score=127.96 Aligned_cols=203 Identities=11% Similarity=-0.027 Sum_probs=143.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 376 (520)
..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|.+.++++.+ .+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333334444444444444444444332 12334444455555555555555555544332 24456677777888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
++++|..+++++.+.+..|+. ..+..+...+...|++++|.+.++++.+.. +.+...+..++.+|.+.|++++|...
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888774445644 477788888889999999999999987532 34567888899999999999999999
Q ss_pred HhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 456 INKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 456 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
++++.. +.+...+..+...+...|+.++|...++++++..|+++.....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 998654 45677888888889999999999999999999999998877654
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=1.4e-14 Score=129.90 Aligned_cols=224 Identities=12% Similarity=-0.081 Sum_probs=178.2
Q ss_pred hCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 273 QNGEAEKALAMFFQMLDAGVR---ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+... .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 1345677778888888999999999988887653 467788888888999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
|.+.++++.+ .+...+..++.++...|++++|...++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999887765 3567889999999999999999999999998 4566655555556667789999999999888753
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-PD-----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
. +++...+ .++..+...++.++|.+.+++.... |+ ..++..+...+...|++++|...++++++.+|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 4444444 4777788888899999999987652 22 567888899999999999999999999999998876
Q ss_pred hh
Q 010031 501 AM 502 (520)
Q Consensus 501 ~~ 502 (520)
.+
T Consensus 251 ~~ 252 (275)
T 1xnf_A 251 EH 252 (275)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.3e-15 Score=132.39 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=142.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 010031 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 377 (520)
.+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33333444444444444444444322 12334444445555555555555555544332 245667777888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|++.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988753 2356688888888999999999999999987532 4467788889999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 458 KMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 458 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.. +.+..++..+..++...|++++|...++++++++|+++.++..++.+....|
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8654 3457789999999999999999999999999999999999999888776654
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=3.2e-14 Score=127.50 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=184.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (520)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445667777788888888888888888773 344566667777777 888888888888887765 6677777
Q ss_pred HHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010031 337 LVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (520)
Q Consensus 337 l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 407 (520)
+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 8888888888887655 466788888888888 999999999999999865 566777788888
Q ss_pred Hc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 010031 408 WY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT-- 477 (520)
Q Consensus 408 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 477 (520)
.. .+++++|...+++..+. .+...+..+..+|.. .+++++|++.+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 87 89999999999998852 345677888999999 99999999999987654457788888888988
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 478 --HKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 478 --~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.|++++|...++++++..|+++...
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999988754433
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7e-15 Score=130.46 Aligned_cols=208 Identities=9% Similarity=-0.058 Sum_probs=181.7
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-------hhHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D-------LLTW 365 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-------~~~~ 365 (520)
...+..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...++...+ | + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888999999999999999999887 7888999999999999999999999998775 2 1 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (520)
..+...+...|++++|...|+++.+ +.|+. ..+...|++++|...++++... .+.+...+..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 9999999999999999999999998 45664 3456678999999999998852 13345688899999999
Q ss_pred cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 446 VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.|++++|++.++++.. +.+..+|..+..++...|++++|...++++++.+|+++.++..++.++...|+.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999765 4567889999999999999999999999999999999999999999999999854
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=2.8e-14 Score=123.68 Aligned_cols=205 Identities=11% Similarity=-0.038 Sum_probs=142.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|.+.++++.+ .+..++..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333344444444444444444444332 12233444444555555555555555544332 2445667777788888
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 376 -GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 376 -~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|++++|...++++.+.+..|+. ..+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888874344553 477888888899999999999999887532 345678888999999999999999
Q ss_pred HHHhhCCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 454 NFINKMPE--T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 454 ~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.++++.. + .+...+..+...+...|+.+.|...++.+.+.+|+++.+...+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 99988765 3 46777777777789999999999999999999999998876654
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=2.4e-14 Score=137.70 Aligned_cols=247 Identities=11% Similarity=-0.001 Sum_probs=126.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCCh---HHHHHHhcccCCCCcchHHHHHHHHHhCC
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 108 (520)
..+...+...|+++.|.+++....+.|. +..+..+..+|...|+. ++|...|+...+.++..+..+...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 4567778888999999999999988873 23334455566667777 89999998877667777777777566655
Q ss_pred -----ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhH---HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 109 -----HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG---RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 109 -----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
++++|+..|++..+.|. ...+..+...|...+..+.+ .+.+......| ++.....|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 67889999999888553 22566666666655544433 33344443333 455666777777777755
Q ss_pred hHHHH----HhccCCCCCCCCCchhHHHHHHHHHhcC---ChhHHHHHHhhCCC---CCHHHHHHHHHHHHhc----CCH
Q 010031 181 RGAFK----VFDETPEKNKSESVLLWNVLINGCSKIG---YLRKAVELFGMMPK---KNVASWVSLIDGFMRK----GDL 246 (520)
Q Consensus 181 ~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~ 246 (520)
+.+.. +++..... ++..+..|...|...| +.++|+..|++..+ ++...+..+...|... ++.
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 44433 33333322 3336666777777777 66667666665543 2333334444444332 455
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH-H--HhCCChhHHHHHHHHHHHcC
Q 010031 247 KKAGELFEQMPEKGVVSWTAMING-F--SQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~ 291 (520)
++|.++|++....+...+..+... + ...+++++|+.+|++..+.|
T Consensus 234 ~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 234 KTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 555555555441123334444443 2 23444555555555444433
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=4.7e-15 Score=142.62 Aligned_cols=250 Identities=10% Similarity=-0.006 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHhcCCCCCcccHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010031 231 ASWVSLIDGFMRKG----DLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFTVVSAL 303 (520)
Q Consensus 231 ~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 303 (520)
.....+...|...+ +.+.+..+++.....+..++..+...|...| +.++|+..|++..+.| .++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 33444444444444 3344444555555555556666777777777 6777777777777665 44444444455
Q ss_pred HHhhcc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHc
Q 010031 304 SACAKV----GALEAGVRVHNYISCNDFGLKGAIGTALVDM-Y--AKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 304 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 375 (520)
..|... +++++|...|++.. . -++..+..+... | ...+++++|.+.|++..+ .+...+..|...|. .
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-c
Confidence 555443 56777777777765 2 344555555555 3 346677777777766554 34556666666665 4
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc-
Q 010031 376 G-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR- 445 (520)
Q Consensus 376 ~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 445 (520)
| ++++|...|++.. . -+...+..|...|.. ..++++|..+|++..+ .| +......|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NG---QNSADFAIAQLFSQG 367 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TT---CTTHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hC---hHHHHHHHHHHHHhC
Confidence 4 7777777777765 2 234455555555544 3377777777777663 22 23344556665553
Q ss_pred ---cCChHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcC
Q 010031 446 ---VGQVDKALNFINKMPETPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 446 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+.++|..+++......+......+-.. ....++.++|....++..+.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34677777777776543333322222222 22334556666666665543
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=1.4e-12 Score=129.70 Aligned_cols=438 Identities=8% Similarity=-0.004 Sum_probs=292.9
Q ss_pred hHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCC---hhHHHHHHH
Q 010031 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSH---FQSCISHFV 118 (520)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~A~~~~~ 118 (520)
......++..+..+ +.|...+..++..+.+.++++.+..+|+++.. .....|...+..-.+.++ ++.+.++|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 33444556666665 46899999999999999999999999998754 456678888888888888 999999999
Q ss_pred HhhhCC-CCCCcccHHHHHHHHhccCCh--------hhHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHH---------hc
Q 010031 119 FMLRLS-VRPNRLTYPFVSKSVASLSLL--------SLGRGLHCLIVKS-GV-EYD-AFVRVHLADMYV---------QL 177 (520)
Q Consensus 119 ~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~---------~~ 177 (520)
+..... .+|+...|..-+....+.++. +.+.++|+..+.. |. .++ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998743 237777777666655444443 3345777776654 55 454 467887777654 24
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhc--
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-- 255 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 255 (520)
++++.+..+|++.+.........+|......--..+. ..+.+++.+. ..+++.|...+.+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHHH
Confidence 4578899999998853211112333322221111111 1122221110 0111222222211
Q ss_pred -----CCC--------------C--C------cccHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010031 256 -----MPE--------------K--G------VVSWTAMINGFSQNG-------EAEKALAMFFQMLDAGVRANDFTVVS 301 (520)
Q Consensus 256 -----~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ 301 (520)
+.. | + ...|...+..--..+ ..+.+..+|++.+.. ++-+...|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 110 0 0 123555555443333 123456778888776 3556777777
Q ss_pred HHHHhhccCChHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------
Q 010031 302 ALSACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------------KD------ 361 (520)
Q Consensus 302 l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------ 361 (520)
.+.-+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 777777888988996 9999988643 45666777888889999999999999987764 21
Q ss_pred ------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCChh
Q 010031 362 ------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 362 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
...|...+....+.|+.+.|..+|.++++.-..+....|...+..-.+. ++.+.|.++|+...+.+ +.+..
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~ 505 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchH
Confidence 2367888888888999999999999998851112233444333333343 55999999999998754 45566
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE-TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+...+......|+.+.|..+|++... .| ....|...+.--.+.|+.+.+..+.+++.+..|+++..-...
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~ 581 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 777888888899999999999999775 23 245788888888899999999999999999999987655443
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=5.8e-14 Score=120.79 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+..+ .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3445556666666667777777666666542 33455566666666666666666666666665542 344455555555
Q ss_pred HHhc-----------CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 341 YAKC-----------GNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 341 ~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
+... |++++|...+++..+ | +...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 444444444444332 2 23344444555555555555555555555443 344444455555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
+...|++++|+..++++.+.. +.+...+..+..++.+.|++++|++.+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544321 22334444455555555555555554444
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.9e-13 Score=122.33 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHh
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSAC 306 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~ 306 (520)
.+......+...|++++|...|+++.+ .+...+..+...|...|++++|+..+++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777888888888877643 2356888888999999999999999999888432222 33478888889
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
...|++++|...+++..+... .+..++..+..+|...|++++|...+++..+ .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988653 4667889999999999999999999998876 355677777745555679999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCc---HHHHHHHHHHcHhhcCCCCCh------hHHHHHHHHHhccCChHHHH
Q 010031 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPSV------KHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 384 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|+++.+. .|+ ...+..+...+...|+ +++|...++++.+...-.|+. ..|..+...|.+.|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999984 555 5577778888888888 888888888887543223442 57788999999999999999
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHH
Q 010031 454 NFINKMPE-TP-DFVIWGALFCAC 475 (520)
Q Consensus 454 ~~~~~~~~-~~-~~~~~~~l~~~~ 475 (520)
+.++++.. .| +...+..+....
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999765 34 455555554443
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=136.24 Aligned_cols=288 Identities=14% Similarity=0.054 Sum_probs=176.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC--CC-----HHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----c
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KN-----VASWVSLIDGFMRKGDLKKAGELFEQMPE-----KG----V 261 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~ 261 (520)
....+......+...|++++|...|+++.+ |+ ...+..+...+...|++++|...+++... .+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777766554 22 13445555555555665555555544321 00 2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
.++..+...|...|++++|...+++..+... .++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 2344444555555555555555554433200 0010 0012233444444
Q ss_pred HHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 341 YAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 341 ~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
|...|+ +++|...+++... + ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 5555544443322 1 1246777788888888888888888887652
Q ss_pred CC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 392 GT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 392 ~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.. .++ ..++..+...+...|++++|...+++......-.++ ..++..+..+|...|++++|.+.+++...
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 112 227777888888999999999999887642211112 45677888999999999999999887653
Q ss_pred ---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC------CCCcchhHHHHhhhhhccCCC
Q 010031 462 ---TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLN------LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.++ ..++..+...+...|++++|...+++++++. |....++..++.++...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 122 4567788888999999999999999998763 344667888999999888753
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=8.3e-14 Score=116.59 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=140.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 405 (520)
+..+|..+...|...|++++|.+.|++..+ .+..++..+..++...|++++|...++..... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 556777788888888888888888887664 35678888899999999999999999998884 44 4457777778
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
.+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|++.+++... +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999987532 44567888999999999999999999998765 4467889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcc
Q 010031 484 AKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~ 500 (520)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998754
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=3.2e-14 Score=127.57 Aligned_cols=237 Identities=10% Similarity=-0.101 Sum_probs=163.4
Q ss_pred cCCHHHHHHHHhcCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 010031 243 KGDLKKAGELFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (520)
.|++++|...|+++.+. +..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666655432 13456777777888888888888888877763 34567777777788888888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010031 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (520)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 393 (520)
...++++.+.. +.+...+..+..+|...|++++|...++++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888877764 23566777788888888888888888877664 433333444445566789999999998877742
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHH
Q 010031 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVI 467 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 467 (520)
.++...+ .++..+...++.++|...+++.... .|+ ...+..++.+|.+.|++++|...++++.. .|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 2333333 4666777888888899888887531 222 46778889999999999999999998765 3432
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 010031 468 WGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~ 488 (520)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333455677888888888776
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.1e-12 Score=115.61 Aligned_cols=210 Identities=12% Similarity=-0.010 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMI 369 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~ 369 (520)
++.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567777888889999999999999999883 355778889999999 9999999999998765 4678889999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 370 WGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 370 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999864 67788888899988 9999999999999985 32 5667788888
Q ss_pred HHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh--
Q 010031 442 LLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ-- 511 (520)
Q Consensus 442 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 511 (520)
.|.. .+++++|++.+++.....++..+..+...+.. .|++++|...++++++..| +.++..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999997765677888889999999 9999999999999999876 7899999999998
Q ss_pred --ccCCC
Q 010031 512 --KGDGR 516 (520)
Q Consensus 512 --~g~~~ 516 (520)
.|+.+
T Consensus 233 ~~~~~~~ 239 (273)
T 1ouv_A 233 GVTRNEK 239 (273)
T ss_dssp SSSCCST
T ss_pred CcccCHH
Confidence 66654
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=2.7e-12 Score=116.97 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-------ccCCh-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACA-------KVGAL-------EAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
++|..+|++.+... +-++..|..+...+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888777652 445556666655554 34665 7888888888763123355677788888888
Q ss_pred cCCHHHHHHHHhcCCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCcHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--K-DLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALN 418 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 418 (520)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 3 233 78888888888888888888888888743 223334443333322 3688888888
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TP--DFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|++..+.. +.+...|..++..+.+.|++++|+.+|+++.. +| ....|..++....+.|+.++|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887543 34567788888888888888888888888654 33 35578888888888888888888888888
Q ss_pred cCCCCCcchh
Q 010031 493 SLNLSIPQAM 502 (520)
Q Consensus 493 ~~~p~~~~~~ 502 (520)
+..|+++...
T Consensus 269 ~~~p~~~~~~ 278 (308)
T 2ond_A 269 TAFREEYEGK 278 (308)
T ss_dssp HHTTTTTSSC
T ss_pred HHcccccccc
Confidence 8888766543
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.9e-12 Score=114.31 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=151.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 456677777888888888888888877763 44566777777888888888888888888876643 3566777788888
Q ss_pred HhcCCHHHHHHHHhcCCC----C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHH
Q 010031 342 AKCGNIEAASLVFGETKE----K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKL 415 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 415 (520)
...|++++|.+.++++.+ | +...+..++..+...|++++|...++++.+. .| +...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887655 2 3456777888888899999999999988874 34 45678888888889999999
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|...++++.+. .+.+...+..+...+.+.|++++|.+.++++..
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999888742 245566778888888899999999998888754
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=3.7e-14 Score=135.34 Aligned_cols=266 Identities=14% Similarity=0.040 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC--CC-H----HHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------CcccHH
Q 010031 202 WNVLINGCSKIGYLRKAVELFGMMPK--KN-V----ASWVSLIDGFMRKGDLKKAGELFEQMPEK---------GVVSWT 265 (520)
Q Consensus 202 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 265 (520)
+..+...+...|++++|...|+++.+ |+ . ..+..+...|...|++++|...+++..+. ...++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455556666777777776666554 22 1 24455555555555555555555443211 023344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhc
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKC 344 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 344 (520)
.+...|...|++++|...+++..... .+.+ ......++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHc
Confidence 44445555555555555554443320 0000 011122344444555555
Q ss_pred CC-----------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-
Q 010031 345 GN-----------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD- 396 (520)
Q Consensus 345 ~~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~- 396 (520)
|+ +++|.+.+++..+ . ...++..+...+...|++++|...+++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 55 5555555444322 1 224677778888888888888888888765211 012
Q ss_pred ---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC-
Q 010031 397 ---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD- 464 (520)
Q Consensus 397 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~- 464 (520)
..++..+...+...|++++|...+++......-..+ ..++..+..+|...|++++|.+.+++... .++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 126777888889999999999999887643211111 45677888999999999999999988654 112
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 465 ---FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 465 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
..++..+...+...|++++|...+++++++.+..
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3467778888999999999999999999877643
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=1.7e-13 Score=127.65 Aligned_cols=211 Identities=8% Similarity=-0.024 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN-IEAASLVFGETKE---KDLLTWTAMIWGL 372 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 372 (520)
..+..+...+...|++++|...++++++... .+...|..+..++...|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566677778889999999999999998763 467888999999999997 9999999998876 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc-cCChH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR-VGQVD 450 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 450 (520)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++.+.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 456 45599999999999999999999999998632 4457789999999999 66658
Q ss_pred HH-----HHHHhhCCC-C-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 451 KA-----LNFINKMPE-T-PDFVIWGALFCACRTHK--DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 451 ~A-----~~~~~~~~~-~-~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+| ++.++++.. . .+...|..+..++...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 88 477877654 3 45778999999998888 689999999998 999999999999999999886
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=4.5e-13 Score=115.98 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=160.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
.+...+..+...+...|++++|.+.++.+.+ .+...+..++..+...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3556778889999999999999999997765 356789999999999999999999999998852 235668889999
Q ss_pred HHHcc-CcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010031 406 ACWYS-GQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT 481 (520)
Q Consensus 406 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 481 (520)
.+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|++.++++.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999985 323343 56888999999999999999999998765 34578899999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNL-SIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++..| +++..+..++.++...|+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 999999999999999 99999998988888888754
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=2.1e-13 Score=132.05 Aligned_cols=181 Identities=7% Similarity=-0.045 Sum_probs=118.4
Q ss_pred ChhHHHHHHHHHHhcCCH-HHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNI-EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
+...+..+..+|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|...|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 334444444444445555 555554444332 2345666667777777777777777777776 4566566677777
Q ss_pred HHHcc---------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc--------CChHHHHHHHhhCCC-CC----
Q 010031 406 ACWYS---------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------GQVDKALNFINKMPE-TP---- 463 (520)
Q Consensus 406 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~---- 463 (520)
.+... |++++|++.+++..+.. +.+...|..+..+|... |++++|++.|+++.. .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 77777 77777777777776422 33456677777777776 777777777777554 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777777766654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.2e-13 Score=127.61 Aligned_cols=236 Identities=11% Similarity=0.046 Sum_probs=146.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CC----hh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LK----GA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 332 (520)
.+..+...+...|++++|...+++.... +..| ...++..+...+...|+++.|...+++..+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444445555555555555555544321 1111 1233444455555556666665555554332100 11 22
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHH
Q 010031 333 IGTALVDMYAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 333 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
++..+...|...|+ +++|.+.+++... + ...++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555556666666 6666666554432 1 12467778888888999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 010031 384 YFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 384 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
.+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765210 111 227778888889999999999999887643211122 4567788899999999999999
Q ss_pred HHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 455 FINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 455 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.++++.. .++ ..++..+...+...|++++|...+++++++.++.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988653 122 3467788888999999999999999999987754
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=3.6e-13 Score=118.19 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=138.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3456667777777888888888888777653 4456677777777778888888888888777664 2456677777788
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
+...|++++|.+.++++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888876654 356677888888888888888888888887742 224567788888888888999999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHH
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALF 472 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 472 (520)
..++++.+.. +.+..++..+..+|.+.|++++|.+.++++.. .| +...+..+.
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 180 SQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 8888887532 34566788888888888999999888888654 33 344444443
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=4.1e-13 Score=127.74 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=191.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHc----CCC-CChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN----DFTVVSALSACAKVGALEAGVRVHNYISCN----DFG-LKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 332 (520)
..+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++++.+. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345566777888888888888888888763 223 245667777888888888888888876442 111 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGR--------------------YEQAIQ 383 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 383 (520)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 667788888899999999988887654 22 3478888999999999 999999
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 010031 384 YFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 384 ~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
.+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99887552 21222 237888888999999999999999998753211222 2378889999999999999999
Q ss_pred HHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 455 FINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 455 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
.+++... .++ ..++..+...+...|++++|...+++++++.+.. +.++..++.++...|+.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9988653 122 4577788888999999999999999999876544 568889999999999854
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=2.5e-13 Score=129.60 Aligned_cols=252 Identities=10% Similarity=0.024 Sum_probs=188.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHc----C-CCCChhHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSALSACAKVGALEAGVRVHNYISCN----D-FGLKGAIG 334 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 334 (520)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...+++..+. + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4456667778888888888888887763 2232 35667777778888888888888776543 1 12234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEK---------DLLTWTAMIWGLAIHGR-----------------YEQAIQYFKKM 388 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 388 (520)
..+...|...|++++|...+++..+- ...++..+...+...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888888889999888888776541 23478888999999999 99999999887
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 389 MYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 389 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|++.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 552 11222 237788888999999999999999998753211122 237788999999999999999999886
Q ss_pred CC----CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 460 PE----TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 460 ~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
.. .. ...++..+...+...|++++|...+++++++.++. ..++..++.++...|+.+
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 54 11 14577888889999999999999999999876544 348889999999999854
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=4.7e-13 Score=126.33 Aligned_cols=230 Identities=11% Similarity=-0.028 Sum_probs=165.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC------CChhHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFG------LKGAIGT 335 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 335 (520)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777776653 1111 2245666666777777777777777776543111 1134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDG-TVFL 401 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~ 401 (520)
.+..+|...|++++|.+.+++..+ ++ ..++..+..+|...|++++|...+++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776553 11 137888999999999999999999998772 232443 4888
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---VDKALNFINKMPETPD-FVIWGALFCA 474 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 474 (520)
.+...+...|++++|.+.+++..+...-..+ ...+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999988642211112 2345678889999999 9999999999865433 3467788889
Q ss_pred HHHcCCHHHHHHHHHHHhcCCC
Q 010031 475 CRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p 496 (520)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.4e-12 Score=113.19 Aligned_cols=206 Identities=7% Similarity=-0.058 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHH
Q 010031 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIW 370 (520)
Q Consensus 294 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 370 (520)
.++..+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777778888888999999999999988876546667777788888888899888888887665 3 4467888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-G-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVV 439 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 439 (520)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.++++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888873 444 3 3466677777888888888888888874 2454 4567777
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..+|...|+. .++++.. ..+...+.... ....|.+++|+..++++++++|+++.+...++.+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7777665543 2222221 22333343332 3446678999999999999999999999988877543
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.9e-12 Score=118.03 Aligned_cols=248 Identities=9% Similarity=0.017 Sum_probs=163.8
Q ss_pred HHHHHHHhcCCC---CCcccHHHHHHHHH-------hCCCh-------hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 247 KKAGELFEQMPE---KGVVSWTAMINGFS-------QNGEA-------EKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 247 ~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
++|..+|++... .+...|..++..+. ..|++ ++|..+|++.+..-.+-+...+..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 344445544432 22344555554443 34665 77888888777631123445677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH-HcCCHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA-IHGRYEQAIQY 384 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~-~~~~~~~a~~~ 384 (520)
|+++.|..+|+++.+... .+.. +|..++..+.+.|++++|..+|++..+ | +...|...+.... ..|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888776432 1233 677777888888888888888887665 2 3334443333322 26999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 385 FKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 385 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|++..+. .| +...|..++..+...|++++|..+|++......++|+ ...|..++..+.+.|+.++|..+++++..
T Consensus 192 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 44 4558888888899999999999999999853234553 56788889999999999999999988654
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.|+......+ ..+ ....+.++++|+++..+.++|..
T Consensus 270 ~~p~~~~~~~~-~~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 270 AFREEYEGKET-ALL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HTTTTTSSCHH-HHH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HcccccccchH-HHH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 3332100000 111 11115677999999999988753
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=6.2e-13 Score=122.77 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHc----CCC-CChhHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN----DFTVVSALSACAKVGALEAGVRVHNYISCN----DFG-LKGAIG 334 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 334 (520)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4456678899999999999999998864 223 356778888899999999999999887543 211 234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGR--------------------YEQAIQYF 385 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 385 (520)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7888999999999999999887654 22 2378888899999999 99999999
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHH
Q 010031 386 KKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 386 ~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887542 11222 237778888899999999999999988643211122 237788999999999999999999
Q ss_pred hhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 457 NKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 457 ~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
++... .++ ..++..+...+...|++++|...++++++..|.. ..++..++.++...|+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 88653 122 4567788888999999999999999999876654 347888999999999854
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.4e-12 Score=108.98 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...|..+...+...|++++|+..|++..+ +.|+ ..++..+..++...|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 567899999999999999999999999998 4565 4588999999999999999999999987532 4456678888
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
...+...++++.|.+.+++... +.+...+..+..++.+.|++++|++.++++++++|+++.++..+|.+|.+.|+.+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999998664 4467789999999999999999999999999999999999999999999999854
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=125.41 Aligned_cols=235 Identities=11% Similarity=0.064 Sum_probs=137.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc------C-CC
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA-------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D-FG 328 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 328 (520)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555556666665555555442 11222344455555556666666666666555432 1 11
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------ 391 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 391 (520)
....++..+...|...|++++|...+++..+ .....+..+...+...|++++|..+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2234455566666666666666666655432 12345777788888888899998888888763
Q ss_pred CCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhc------CCCCCh-hH------HHHHHHHHhccCChHHHHHHHh
Q 010031 392 GTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDY------FIEPSV-KH------HTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 392 ~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~-~~------~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+-.|+.. ++..+...+...|++++|.+.++++.+.. ...+.. .. +..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2234333 77788888899999999999998887421 112221 12 2223333445566666666777
Q ss_pred hCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 458 KMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 458 ~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.... .| ...++..+..+|.+.|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6654 23 3567888999999999999999999999998875
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=5.5e-12 Score=105.30 Aligned_cols=170 Identities=9% Similarity=0.023 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 407 (520)
...+..+...+...|++++|...++++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998876 356788899999999999999999999998852 23566888889999
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
...|++++|.+.++++.... +.+...+..++.++...|++++|.+.++++.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998542 45677888999999999999999999998764 346788999999999999999999
Q ss_pred HHHHHHhcCCCCCcchhH
Q 010031 486 IALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~ 503 (520)
..++++++..|+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 165 PHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHcCCCchhhHh
Confidence 999999999998876654
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=5e-10 Score=111.41 Aligned_cols=404 Identities=6% Similarity=-0.037 Sum_probs=255.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---hhhHHHHHHHHHHhC-CCCChhHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL---LSLGRGLHCLIVKSG-VEYDAFVR 167 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 167 (520)
.|...|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|++.+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888888888888873 22334456666666667777 888888888887743 13677788
Q ss_pred HHHHHHHHhcCCh--------hHHHHHhccCCC-CCC-CC-CchhHHHHHHHHHh---------cCChhHHHHHHhhCCC
Q 010031 168 VHLADMYVQLGKT--------RGAFKVFDETPE-KNK-SE-SVLLWNVLINGCSK---------IGYLRKAVELFGMMPK 227 (520)
Q Consensus 168 ~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 227 (520)
...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777766665554 223466665432 243 33 34566666654432 3345667777777765
Q ss_pred -CCH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc--CC----C----
Q 010031 228 -KNV---ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GV----R---- 293 (520)
Q Consensus 228 -~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~----~---- 293 (520)
|.. .+|......-...+. ..+.+++.+ ...+++.|...+.++... ++ +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 321 222222111111010 011111111 011233444444443221 11 0
Q ss_pred -------C-----C---HHHHHHHHHHhhccC-------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 294 -------A-----N---DFTVVSALSACAKVG-------ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 294 -------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
| + ...|...+.---..+ ..+.+..+|++.+..- +..+.+|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 022333332222221 1234567788887653 457888888888888899998996
Q ss_pred -HHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHH
Q 010031 352 -LVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---------EPD------------GTVFLAILTA 406 (520)
Q Consensus 352 -~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 406 (520)
++|+.... | +...|...+......|+++.|..+|+++.+... .|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99987765 3 555677888888899999999999999886310 142 2367888888
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-QVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
..+.|+.+.|..+|.++.+..+ .+...+|...+..-.+.| +.+.|.++|+.... +.+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 8889999999999999985311 223445544444444554 59999999998765 3467778888888888999999
Q ss_pred HHHHHHHHhcCCCC---CcchhHHHHhhhhhccCCC
Q 010031 484 AKIALQSSCSLNLS---IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 484 A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~ 516 (520)
|..+|+++++..|+ ....|.....+-.+.|+.+
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999998883 5577888888888888754
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.1e-11 Score=116.86 Aligned_cols=228 Identities=8% Similarity=0.004 Sum_probs=113.8
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC----CCCC-CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEK----NKSE-SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 244 (520)
....+...|++++|...+++..+. +-++ ...++..+..++...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 556677788888888888776543 1111 235667777777888888887777665442
Q ss_pred CHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCChHHHH
Q 010031 245 DLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAN----DFTVVSALSACAKVGALEAGV 316 (520)
Q Consensus 245 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~ 316 (520)
++...... ...+++.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|.
T Consensus 172 -------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 172 -------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11111110 012334444444444444444444444432200 001 123444444455555555555
Q ss_pred HHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCh---hHHHHHHHHHHHcCC---HHH
Q 010031 317 RVHNYISCN----DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDL---LTWTAMIWGLAIHGR---YEQ 380 (520)
Q Consensus 317 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~~~ 380 (520)
..+++..+. +. +....++..+..+|...|++++|...+++..+ .+. ..+..+...+...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 555544431 11 22233444455555555555555555544332 111 123445555555565 455
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 381 AIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
|+.++++. +..|+.. .+..+...|...|++++|.+.+++..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555443 2233222 55556666666777777777666654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.1e-11 Score=113.51 Aligned_cols=229 Identities=8% Similarity=-0.063 Sum_probs=162.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC------CChhHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGV-RAN----DFTVVSALSACAKVGALEAGVRVHNYISCNDFG------LKGAIG 334 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ 334 (520)
.....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.+..+.... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777665310 122 245566666777777777777777776542111 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPDGTVF 400 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 400 (520)
+.+..+|...|++++|.+.+++..+ ++ ..++..+..++...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 6777788888888888887776553 12 24677888999999999999999999876 32 2224588
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHhhCCCCCC-HHHHHHHHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---VDKALNFINKMPETPD-FVIWGALFC 473 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 473 (520)
..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+..+++....|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999998753322122 3356677778888888 9999999998654333 346677888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCC
Q 010031 474 ACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.|...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999998653
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=4.3e-12 Score=122.83 Aligned_cols=188 Identities=10% Similarity=-0.074 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhhccCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHH
Q 010031 295 NDFTVVSALSACAKVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWG 371 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 371 (520)
+...+..+..++...|++ ++|...+++..+... .+...+..+..+|...|++++|.+.|++..+ |+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444455555555 555555555544431 2344455555555555555555555554433 334444555555
Q ss_pred HHHc---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CcHHHHHHHHHHcHhhcCCCC--
Q 010031 372 LAIH---------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS--------GQVKLALNFFDSMRFDYFIEP-- 431 (520)
Q Consensus 372 ~~~~---------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-- 431 (520)
+... |++++|+..|++..+. .|+ ...|..+..+|... |++++|++.|++..+. .|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~ 254 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKA 254 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCc
Confidence 5555 5666666666666552 333 33555555555555 6666666666665532 23
Q ss_pred --ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 432 --SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 432 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
+...|..+..+|...|++++|++.|+++.. +.+...+..+..++...|++++|+..+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666665443 223445555555566666666665543
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=2.7e-12 Score=129.12 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTA 406 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 406 (520)
...++.|..+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555555556666666666655555443 2344555555555556666666666655555 34432 355555555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A 484 (520)
+...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|+++.+ .| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 555566666666555555321 22234555555555555666666555555443 22 344555555555555555555
Q ss_pred HHHHHHHhcCCCC
Q 010031 485 KIALQSSCSLNLS 497 (520)
Q Consensus 485 ~~~~~~~~~~~p~ 497 (520)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 5555555555443
No 78
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.32 E-value=1.3e-12 Score=104.92 Aligned_cols=144 Identities=12% Similarity=0.017 Sum_probs=116.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
|...+...|++++|+..++.... ..|+.. .+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445566788999998888765 345444 66678888999999999999999988532 34577899999999999
Q ss_pred CChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 447 GQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIA-LQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|++++|+..|+++.. .| ++..|..+...+.+.|++++|... ++++++++|+++.++...+.++...|+.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 999999999998765 44 577899999999999998776655 6999999999999999999999998873
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=3e-11 Score=104.75 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 439 (520)
++..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+. .| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 445666667777777777888777777777543356666666777777778888888877777642 33 34567777
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CcchhHHHHhh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DF-------VIWGALFCACRTHKDTKIAKIALQSSCSLNLS--IPQAMSYCQTF 508 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 508 (520)
..+|...|++++|++.+++... .| +. ..|..+...+...|++++|+..++++++++|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777778888888877777654 23 34 34666667777788888888888888888888 77888888888
Q ss_pred hhhccCC
Q 010031 509 MQQKGDG 515 (520)
Q Consensus 509 ~~~~g~~ 515 (520)
+...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=4.6e-11 Score=107.79 Aligned_cols=215 Identities=12% Similarity=0.003 Sum_probs=135.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDA----GVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
+..|...|++++|...|.+..+. |-+++ ..++..+..+|...|++++|...+++..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45556666666666666655432 11111 234444455555555555555555444321 11
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCcHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD-------GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~ 414 (520)
..|+...+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|+++
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 11222111 23567788888886 9999999999988762 221 246788888999999999
Q ss_pred HHHHHHHHcHhhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH------HHHHHHHHHH--HcCC
Q 010031 415 LALNFFDSMRFDYFIEPSV-----KHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV------IWGALFCACR--THKD 480 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~~l~~~~~--~~g~ 480 (520)
+|+..+++..+...-.+.. ..|..+..++...|++++|+..+++... .|+.. .+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987532111221 1567788889999999999999998765 34321 2344555554 4567
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+++|+..|+++++++|.+...+..+-..+.
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 999999999999999988777766666553
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.1e-11 Score=124.86 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVN 441 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 441 (520)
+|+.|...+...|++++|+..|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. .| +...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 444444455555555555555555444 23332 24444444455555555555555544431 22 2334444555
Q ss_pred HHhccCChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 442 LLSRVGQVDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+|.+.|++++|++.+++..+ . .+...|..+..++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 55555555555555544332 2 2234444444445555555555555555555555555555555555554444
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.1e-09 Score=102.70 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=188.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC----CCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHH
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPE----KGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAND----FTV 299 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~ 299 (520)
.......+...|++++|...+++... .+. .++..+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445567788999999999876432 221 2466777888899999999999998775311 1222 234
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C------ChhH
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCN----DFG--L-KGAIGTALVDMYAKCGNIEAASLVFGETKE--K------DLLT 364 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~------~~~~ 364 (520)
..+...+...|+++.|...+++..+. +.. | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667788999999999999987653 221 2 234556678889999999999999887543 1 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFL----AILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHH 436 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 436 (520)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++......-.+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999999876322221 12111 2233477899999999999998742211111 2245
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC----CC---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE----TP---DF-VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
..+..++...|++++|...+++... .+ +. ..+..+..++...|+.++|...+++++++.+....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH
Confidence 6788889999999999999987643 11 22 25556677788999999999999999998776443
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=116.74 Aligned_cols=222 Identities=11% Similarity=0.064 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-------DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------- 359 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 359 (520)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3466778888899999999999999998763 2334556778889999999999999999887653
Q ss_pred ---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhc--
Q 010031 360 ---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDY-- 427 (520)
Q Consensus 360 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 427 (520)
....++..+...+...|++++|...++++.+. +-.|+. ..+..+...+...|++++|.++++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12357888899999999999999999998774 223433 378888889999999999999999987531
Q ss_pred ---CCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC----------CCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 010031 428 ---FIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE----------TPD-------FVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 428 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-------~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
+..| ...++..+..+|.+.|++++|.+.++++.. .+. ...+......+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 245778899999999999999999988653 011 1122233334556777777888
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.++++....|..+.++..++.+|.+.|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHH
Confidence 888888899999999999999999999854
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=2.5e-10 Score=107.32 Aligned_cols=57 Identities=4% Similarity=-0.130 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCC-CC----CchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNK-SE----SVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
....+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455677777777777766544210 11 23355666666777777777766665443
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=5.9e-10 Score=98.38 Aligned_cols=182 Identities=8% Similarity=0.000 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 389 (520)
+...+++..+.+ .++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555443 344445557777788888888888888776432 44567778889999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHccC--cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 390 YSGTEP-----DGTVFLAILTA--CWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 390 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+ ..| +..+...+..+ ....| ++.+|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 467 35566666666 33334 899999999998753 3553333444558889999999999998654
Q ss_pred C------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 461 E------------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 461 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
. +.++.+...++......|+ +|.++++++.+..|++|-...+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 3 2345667677766667787 8999999999999999977654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=2.3e-10 Score=101.42 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD-GTVFL 401 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~ 401 (520)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444555566666666666666666554 2 2 34566667777777777777777777776321 112 22555
Q ss_pred HHHHHHHc--------cCcHHHHHHHHHHcHhhcCCCCChhHH-----------------HHHHHHHhccCChHHHHHHH
Q 010031 402 AILTACWY--------SGQVKLALNFFDSMRFDYFIEPSVKHH-----------------TVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 402 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 456 (520)
.+..++.. .|++++|+..|+++.+.. +.+.... ..+..+|.+.|++++|+..|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56666666 777777777777776533 1122222 56788899999999999999
Q ss_pred hhCCC-CCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCcc---hhHHHHhhhhhccC
Q 010031 457 NKMPE-TPD----FVIWGALFCACRTH----------KDTKIAKIALQSSCSLNLSIPQ---AMSYCQTFMQQKGD 514 (520)
Q Consensus 457 ~~~~~-~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 514 (520)
+++.. .|+ ...+..+..++... |++++|+..++++++..|+++. +...++.++.+.|+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 98764 343 44677777778766 9999999999999999999974 45556666665554
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=1.2e-10 Score=97.15 Aligned_cols=151 Identities=19% Similarity=0.108 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 456778888999999999999999987742 2356688889999999999999999999998532 4567788899999
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+...|++++|.+.++++.. +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999998764 4567888899999999999999999999999999999999999999999999854
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=1.9e-09 Score=101.11 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=84.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh-hHHH--
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR--A--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGT-- 335 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-- 335 (520)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3455666667777777777777776653211 1 1234555566666777777777777766543211111 1111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HH
Q 010031 336 ---ALVDMYAKCGNIEAASLVFGETKEKD-------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDGT-VF 400 (520)
Q Consensus 336 ---~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~-~~ 400 (520)
..+..+...|++++|...++....+. ...+..+...+...|++++|...+++.... |..++.. .+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 12233556666666666666655421 113444555566666666666666655431 1111111 33
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444445555566666655555544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=5.9e-11 Score=107.11 Aligned_cols=176 Identities=13% Similarity=0.019 Sum_probs=122.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHH
Q 010031 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 381 (520)
++++|...+... ...|...|++++|.+.|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 2345566777766666655433 11 34678888888889999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHH
Q 010031 382 IQYFKKMMYSGT---EPD--GTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 382 ~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 451 (520)
+..|++..+... .+. ..++..+...|... |++++|+..+++..+...-..+ ..++..+..+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 988888766211 111 24788888899996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHhhCCC-CCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 452 ALNFINKMPE-TPD---F-----VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 452 A~~~~~~~~~-~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
|+..++++.. .|+ . ..|..+..++...|++++|+..++++++++|+.+..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999998654 222 1 156777888999999999999999999999987764
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=2.6e-10 Score=102.17 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCN------DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K-- 360 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-- 360 (520)
.++..+...+...|++++|...++++.+. +. +....++..+..+|...|++++|.+.+++... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555556666666666666555433 11 12234455566666666666666666655432 1
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhc----
Q 010031 361 --DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDY---- 427 (520)
Q Consensus 361 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 427 (520)
...++..+...+...|++++|...++++.+. +-.|+. .++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777888888889999999888888763 113433 378888889999999999999998887421
Q ss_pred --CCCCC-hhHHHHHHHHHhccC------ChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 428 --FIEPS-VKHHTVVVNLLSRVG------QVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 428 --~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
...+. ...+..+...+...+ .+.++...++.... .|+ ..++..+...+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 234444444443333 34455555555543 232 4578888899999999999999999998753
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=9.7e-11 Score=90.54 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=100.2
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++... +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 566554 77788888999999999999999988532 45677889999999999999999999998765 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
.+..++...|++++|+..|+++++++|+++.+...++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998775
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=8.5e-10 Score=86.33 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 56778888899999999999999998753 2355688888888999999999999999987532 44567888899999
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
...|++++|.+.++++.. +.+...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999988754 3467788889999999999999999999999998864
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=4.7e-10 Score=95.49 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+.+..++...|++++|+..|++..+ ..|+ ...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 34488899999999999999999998 4564 5588999999999999999999999998632 34567888888888
Q ss_pred hccCC--hHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 444 SRVGQ--VDKALNFINKMPETPDF--VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 444 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...|+ .+.+...+++... |++ ..+.....++...|++++|+..|+++++++|++ .....+..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 76654 4566777777664 343 345556667788999999999999999999974 344444443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=4.4e-09 Score=92.84 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=153.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
+-..-.|.+..++.-. .+............+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 3445567777776632 2211122223334455666666665531 112233333443333 33333
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 349 AASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 349 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666766553 4555667888999999999999999999877654234 4488888999999999999999999997
Q ss_pred hhcCCCC-----ChhHHHHHHHH--HhccC--ChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 425 FDYFIEP-----SVKHHTVVVNL--LSRVG--QVDKALNFINKMPET-PDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 425 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+ ..| +..+...++.+ ....| ++++|..+|+++... |+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 256 24455555555 33344 999999999998764 65444455555899999999999999988876
Q ss_pred ----------CCCCcchhHHHHhhhhhccC
Q 010031 495 ----------NLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 495 ----------~p~~~~~~~~l~~~~~~~g~ 514 (520)
+|+++.++..+..+....|+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 58899999888777777776
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.5e-10 Score=117.13 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=95.1
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 307 AKVGALEAGVRVHNYIS--------CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
...|++++|...+++.. +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45556666666666555 221 22344455555555555555555555555443 2344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
|++++|+..|++..+ ..|+ ...+..+..++...|++++ ++.|+++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555 2332 2355555555555555555 55555554321 2233455555555555555555555
Q ss_pred HHhhCCC-CCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 455 FINKMPE-TPD-FVIWGALFCACRTHKD-----TKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 455 ~~~~~~~-~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.++++.. .|+ ...+..+..++...|+ .+...+..+...++.++++.......
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 5555543 333 3344444444444343 23333444444444444444443333
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=1.2e-09 Score=108.75 Aligned_cols=159 Identities=9% Similarity=0.065 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.|++++|.+.+++..+ .+...|..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677778777777665 34567888888889999999999999998884 554 55888888889999999999999
Q ss_pred HHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcC
Q 010031 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTH---KDTKIAKIALQSSCSL 494 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 494 (520)
+++..+.. +.+...+..+..+|.+.|++++|++.+++... +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987532 34567888899999999999999999988654 34577888888888888 9999999999999999
Q ss_pred CCCCcchhHHHH
Q 010031 495 NLSIPQAMSYCQ 506 (520)
Q Consensus 495 ~p~~~~~~~~l~ 506 (520)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998887776655
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=7.4e-08 Score=86.00 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=178.7
Q ss_pred HhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC--ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 010031 272 SQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMY----AKC 344 (520)
Q Consensus 272 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 344 (520)
.+.|. .++|+..++.++..+ +-+...++.--..+...+ ++++++..++.+....+ -+..+|+.-..++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhc
Confidence 34444 468999999988863 334455666666666777 89999999999987764 3455555444444 444
Q ss_pred ---CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc----
Q 010031 345 ---GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ---- 412 (520)
Q Consensus 345 ---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 412 (520)
+++++++++++.+.+ +|..+|+.-.-.+...|.++ ++++.++++++.... |...|+.-...+...|.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788999999988876 47778888888888889888 999999999996433 66688877777777776
Q ss_pred --HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 413 --VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK-ALNFINKMPE-----TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 413 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
++++++.++++.... +-|...|+.+..++.+.|+..+ +..+++++.. ..++..+..++.++.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 899999999988542 5567788888888988888554 5567777654 34678889999999999999999
Q ss_pred HHHHHHHhc-CCCCCcchhHHHHhhh
Q 010031 485 KIALQSSCS-LNLSIPQAMSYCQTFM 509 (520)
Q Consensus 485 ~~~~~~~~~-~~p~~~~~~~~l~~~~ 509 (520)
.++++++.+ .+|.....|.+.+..+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHhccChHHHHHHHHHHhhc
Confidence 999999996 8999999998887654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2.9e-09 Score=107.75 Aligned_cols=181 Identities=11% Similarity=0.050 Sum_probs=114.5
Q ss_pred HhCCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 272 SQNGEAEKALAMFFQML--------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 321 3344566666667777777777777777776654 2355666667777777
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.|++++|.+.|++..+ | +...|..+..++...|++++ +..|+++.+ ..|+ ...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776654 2 45566777777777777777 777777766 3443 34666777777777777777777
Q ss_pred HHHcHhhcCCCCC-hhHHHHHHHHHhccCC--------hHHHHHHHhhCC
Q 010031 420 FDSMRFDYFIEPS-VKHHTVVVNLLSRVGQ--------VDKALNFINKMP 460 (520)
Q Consensus 420 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 460 (520)
|+++.+ +.|+ ...+..+..++...|+ +++|.+.+..+.
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 777653 2444 3456666666655333 555666665554
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=3.3e-08 Score=95.51 Aligned_cols=377 Identities=11% Similarity=-0.014 Sum_probs=221.8
Q ss_pred cCC-ChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-ChhhHHHHH
Q 010031 75 LHK-SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLH 152 (520)
Q Consensus 75 ~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~ 152 (520)
+.| +++.|+.+|++... .+-. ++++.+..+|++... ..|+...|..-+....+.+ ..+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36777777766432 2211 899999999999987 3478888887777666655 346678888
Q ss_pred HHHHHh-CCC-CChhHHHHHHHHHH----hcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 153 CLIVKS-GVE-YDAFVRVHLADMYV----QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 153 ~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+..+.. |.. .+...|...+..+. ..++.+.+.++|++........-...|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 887765 432 35678887777654 346788899999998874211111122222111 11112222322222110
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHHH
Q 010031 227 KKNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-------AEKALAMFFQMLDAGVRANDFT 298 (520)
Q Consensus 227 ~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~ 298 (520)
..|.. ...++++...+.. .+...|...+..-...+. .+.+..+|++++... +.++..
T Consensus 151 -----------~~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~l 215 (493)
T 2uy1_A 151 -----------PIFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEV 215 (493)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHH
Confidence 00000 0001222222222 122345544444332211 244667888887753 455667
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhcCC----------C--CChhHH
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA-ASLVFGETK----------E--KDLLTW 365 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----------~--~~~~~~ 365 (520)
|...+.-+.+.|+++.|..++++.... +.+...+.. |....+.++ ...+.+... . .....|
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 777777777888899999999988877 333333322 222111111 111221110 0 112456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY-SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...+....+.++.+.|..+|+++ .. ..++...|......-.. .++.+.|..+|+...+.. +-++..+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 67777777788899999999999 32 22344455433322222 347999999999998654 233455667788888
Q ss_pred ccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+.|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++++
T Consensus 366 ~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999853 677888888887889999999999999985
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=2e-09 Score=96.61 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=122.9
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 350 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
....+......+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33344443334455667777888889999999999999888 4564 447888888889999999999999988743
Q ss_pred CCCChhHH-HHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhH
Q 010031 429 IEPSVKHH-TVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMS 503 (520)
Q Consensus 429 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 503 (520)
.|+.... ......+.+.++.++|++.+++... +.+...+..+..++...|++++|+..++++++.+|++ +.++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554332 2333446677888888888887654 4457788888889999999999999999999999988 88899
Q ss_pred HHHhhhhhccCCC
Q 010031 504 YCQTFMQQKGDGR 516 (520)
Q Consensus 504 ~l~~~~~~~g~~~ 516 (520)
.++.++...|+.+
T Consensus 260 ~l~~~~~~~g~~~ 272 (287)
T 3qou_A 260 TFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCC
Confidence 9999999888755
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2e-09 Score=97.80 Aligned_cols=199 Identities=13% Similarity=0.029 Sum_probs=115.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (520)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666777776665431 110 111 35555555555543 234555666666666
Q ss_pred HHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCcHHHHHH
Q 010031 353 VFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG---TEPD--GTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 353 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 5554432 11 2356666777777777777777777765421 0111 2356666667766 77777777
Q ss_pred HHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010031 419 FFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD----FVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 419 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
.+++......-..+ ..++..+..+|.+.|++++|++.+++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776542210111 34566777777777888887777776543 111 1244555556666778888888
Q ss_pred HHHHHhcCCCCCcc
Q 010031 487 ALQSSCSLNLSIPQ 500 (520)
Q Consensus 487 ~~~~~~~~~p~~~~ 500 (520)
.+++++ ++|+.+.
T Consensus 217 ~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 217 CVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHT-TSTTSTT
T ss_pred HHHHHh-CCCCCCC
Confidence 888887 7776554
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=7.9e-09 Score=89.11 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAM 368 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l 368 (520)
..+......+...|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+++.+ |+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444455566677777777777777765432211 23455566666666666666666666543 221 133333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHH-----------
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHH----------- 436 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~----------- 436 (520)
..++...+.. .+. .|..+...+...|++++|...|+++.+.. |+ ...+
T Consensus 85 g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHH
Confidence 4444331100 000 01111112223456666666666665422 22 1111
Q ss_pred ------HHHHHHHhccCChHHHHHHHhhCCC-CCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 437 ------TVVVNLLSRVGQVDKALNFINKMPE-TPD-F---VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 437 ------~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
..+...|.+.|++++|+..++++.. .|+ + ..+..+..++.+.|+.++|...++++....|++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 3466778899999999999998765 343 2 467788889999999999999999999999987654
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=4.1e-09 Score=93.28 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hh
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VK 434 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 434 (520)
.+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..|+++.+..+-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45667778888999999999999999999984 454 458888889999999999999999999865432233 35
Q ss_pred HHHHHHHHHhc--------cCChHHHHHHHhhCCC-CCC-HHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 010031 435 HHTVVVNLLSR--------VGQVDKALNFINKMPE-TPD-FVIW-----------------GALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 435 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~-~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 487 (520)
.+..+..++.+ .|++++|+..|+++.. .|+ ...+ ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788888988 9999999999998765 333 2333 4567779999999999999
Q ss_pred HHHHhcCCCCC---cchhHHHHhhhhhccCC
Q 010031 488 LQSSCSLNLSI---PQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 488 ~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 515 (520)
++++++..|++ +.++..++.+|...|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhccc
Confidence 99999999985 45899999999887554
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=2.9e-09 Score=95.29 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHc------C-C
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDA------GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCN------D-F 327 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 327 (520)
.++..+...|...|++++|+..++++.+. +-.| ...++..+...+...|++++|...+.++.+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35556666666666666666666666543 1112 2345566666677777777777777666543 1 1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 010031 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----- 391 (520)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 391 (520)
+.....+..+...|...|++++|...+++..+. ...++..+...+...|++++|...++++.+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 123455566677777777777777776655431 2346777888888888888888888887753
Q ss_pred --CCCCCHH-HHHHHHHHHHccC------cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 392 --GTEPDGT-VFLAILTACWYSG------QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 392 --~~~p~~~-~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...+... .+..+.......+ .+..+...++.... ..+....++..+..+|.+.|++++|.+.+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1222222 3333333333222 23344444433321 112234577888999999999999999988753
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=1.3e-09 Score=86.95 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=97.0
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 384 YFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.|+++.. +.|+.. .+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|++.++++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455544 455444 67777888889999999999999987532 44677888899999999999999999998764
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
+.++..+..+..++...|++++|...+++++++.|++|........+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 345678888999999999999999999999999999887765544443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=6e-09 Score=85.97 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CWY 409 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 409 (520)
...+...+...|++++|...+++..+ .+...+..+..++...|++++|+..++++... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 33455566667777777777776665 34556666677777777777777777666552 3333222211111 111
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC---HHHHHHHHHHHHHcCCHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD---FVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~ 485 (520)
.+....|...+++..+.. +.+...+..+..++...|++++|+..++++.. .|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223556666655321 22355666666666677777777776666543 332 335666666666677776677
Q ss_pred HHHHHHh
Q 010031 486 IALQSSC 492 (520)
Q Consensus 486 ~~~~~~~ 492 (520)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=2.1e-08 Score=85.59 Aligned_cols=90 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQ 412 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 412 (520)
+..+...+...|++++|...|++...++...|..+..++...|++++|+..|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3455666677777777777777777666777777777777777777777777777663 33 34466667777777777
Q ss_pred HHHHHHHHHHcHh
Q 010031 413 VKLALNFFDSMRF 425 (520)
Q Consensus 413 ~~~a~~~~~~~~~ 425 (520)
+++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
No 108
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=7.6e-09 Score=79.52 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|.+.++++.... +.+...+..++.++.+.|++++|+..++++.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3467777778888888888888888887532 34566778888888889999999988888654 3467788889999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+...|++++|...++++++..|+++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887765
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=2e-08 Score=86.54 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVN 441 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~ 441 (520)
+..++..+...|++++|+..|+++.+.... |. ...+..+..++...|++++|+..|+++.+..+-.+.. ..+..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 344455566666666666666666653211 11 1355555666666666666666666665432111111 12333333
Q ss_pred HHh------------------ccCChHHHHHHHhhCCC-CCCH-HHH-----------------HHHHHHHHHcCCHHHH
Q 010031 442 LLS------------------RVGQVDKALNFINKMPE-TPDF-VIW-----------------GALFCACRTHKDTKIA 484 (520)
Q Consensus 442 ~~~------------------~~g~~~~A~~~~~~~~~-~~~~-~~~-----------------~~l~~~~~~~g~~~~A 484 (520)
++. ..|++++|+..|+++.. .|+. ..+ ..+...+.+.|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 333 46899999999998765 3442 222 2345568899999999
Q ss_pred HHHHHHHhcCCCCCc---chhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
+..++++++..|+++ .++..++.++.+.|+.+
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 999999999999987 67999999999999865
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=5.2e-09 Score=81.62 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|++.++++.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 347777777888888888888888887642 133567788888888888899998888887654 3457788889999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+...|++++|...++++++.+|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988774
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=4e-09 Score=87.03 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455677788999999999999999877 3564 458888999999999999999999998753 3344433333222
Q ss_pred -HhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhHHHHhhhhhccCCC
Q 010031 443 -LSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 443 -~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 516 (520)
+...+...+|+..+++... .| +...+..+..++...|++++|...++++++.+|+. +.++..++.++...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2233344457888887654 34 57889999999999999999999999999999975 569999999999999876
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=3.5e-08 Score=84.08 Aligned_cols=181 Identities=12% Similarity=-0.012 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHG----RYEQAIQYFKKM 388 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 388 (520)
+|...|++..+.| ++..+..+...|...+++++|.+.|++..+ .+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4566777776654 566677777777778888888888877655 355666777776666 5 788888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhc----cCChHHHHHHHh
Q 010031 389 MYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR----VGQVDKALNFIN 457 (520)
Q Consensus 389 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 457 (520)
.+.| +...+..|...|.. .+++++|.++|++..+ . .|+ +..+..|...|.. .+++++|+++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7643 45566666666666 6778888888887763 2 232 5666777777776 677888888887
Q ss_pred hCCCC-CCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 458 KMPET-PDFVIWGALFCACRTH-K-----DTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 458 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.... +++..+..+...|... | +.++|...++++.+..+ +.+...++
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 76543 4555666666666553 3 77888888888777643 34444443
No 113
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=1.3e-08 Score=78.94 Aligned_cols=116 Identities=9% Similarity=-0.063 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|++.+++... +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 466677777888888888888888877532 34567778888888889999999988888654 34577888888999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
...|++++|...++++++..|+++.++..++.++...|+-
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988874
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=7e-09 Score=82.50 Aligned_cols=105 Identities=11% Similarity=-0.060 Sum_probs=89.5
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+..+...+.+.|++++|...|+++.... +.+...|..+..+|.+.|++++|++.|+++.. +.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 456554 77788888999999999999999998532 44577889999999999999999999998765 34577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999865
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=2.6e-09 Score=85.38 Aligned_cols=139 Identities=7% Similarity=-0.017 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQV 413 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 413 (520)
..++...|++++|++.++..... +...+..+...|...|++++|++.|++.++ +.|+ ..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34455566777777777666553 334566677778888888888888888877 4554 44777777888888888
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH-HhhCCC-CC-CHHHHHHHHHHHHHcCC
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF-INKMPE-TP-DFVIWGALFCACRTHKD 480 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~-~~~~~~~l~~~~~~~g~ 480 (520)
++|+..|++..+.. +-+...+..+..+|.+.|++++|.+. ++++.. .| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888877521 23456777788888888887766554 465543 33 45566666666666654
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=6.4e-08 Score=86.74 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHH-HHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWT-AMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~ 369 (520)
+.+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...++.+.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33445566666677778888888888888776653 3556677777888888888888888887765 4333222 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
..+...++.++|...+++..+. .|+ ...+..+...+...|++++|...+.++.+...-..+...+..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3355666677777777777763 443 4477777777777888888888887777532111114566777777777777
Q ss_pred hHHHHHHHhh
Q 010031 449 VDKALNFINK 458 (520)
Q Consensus 449 ~~~A~~~~~~ 458 (520)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777776665
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=3.1e-08 Score=77.18 Aligned_cols=128 Identities=15% Similarity=0.268 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|+++.|...++++.+.+. .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----------- 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSA----------- 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-Cch-----------
Confidence 34556666666777777777777766543 33445555566666666666666666666654431 122
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 70 --------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 70 --------------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp --------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 334444555555566666666666655532 12344555566666666666666666666
Q ss_pred cH
Q 010031 423 MR 424 (520)
Q Consensus 423 ~~ 424 (520)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.3e-08 Score=84.93 Aligned_cols=184 Identities=14% Similarity=0.063 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
+......+...|++++|+..|++.... .|+.. .+.. . .... . ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~---------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N---------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T---------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h---------------hhhhHHHHHHHHHHHH
Confidence 334455677888888888888888775 34332 2211 0 0000 0 0011223344778888
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCc--HHHH
Q 010031 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ--VKLA 416 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~a 416 (520)
+.|++++|...|++..+ .+...+..+..++...|++++|+..|++..+ +.|+ ..++..+...+...|+ ...+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999988887765 3667888899999999999999999999988 4665 4478778777766554 3445
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHH
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFC 473 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 473 (520)
...++.... ..|....+.....++...|++++|+..|+++.. .|+......+..
T Consensus 144 ~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555431 122223344556677788999999999998775 677665544443
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=8e-08 Score=81.78 Aligned_cols=171 Identities=10% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHh
Q 010031 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG----NIEAASLVFG 355 (520)
Q Consensus 280 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 355 (520)
|++.|++..+.| ++..+..+...+...+++++|...|++..+.+ ++..+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 34444455555555556666666665555543 33444445555554 4 5556665555
Q ss_pred cCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc----cCcHHHHHHHHHHcHh
Q 010031 356 ETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY----SGQVKLALNFFDSMRF 425 (520)
Q Consensus 356 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 425 (520)
+..+ .+...+..|...|.. .+++++|..+|++..+.|... +...+..|...|.. .+++++|..+|++..+
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5443 244455555555544 455566666666555532110 13344455555554 4556666666655543
Q ss_pred hcCCCCChhHHHHHHHHHhcc-C-----ChHHHHHHHhhCC
Q 010031 426 DYFIEPSVKHHTVVVNLLSRV-G-----QVDKALNFINKMP 460 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~ 460 (520)
. +.+...+..|..+|... | ++++|+.++++..
T Consensus 158 ~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 158 L---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp T---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 1 22333444455555432 1 5555555555543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=7.2e-08 Score=82.17 Aligned_cols=137 Identities=10% Similarity=-0.051 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|.+.+++..... +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 3455677788889999999888876 35677888888888889999999999998887532 44567888888899
Q ss_pred hccCChHHHHHHHhhCCC--CCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 444 SRVGQVDKALNFINKMPE--TPD----------------FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+.|++++|++.++++.. +.+ ...+..+..++...|++++|...+++++++.|++.......
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 999999999988887643 111 26778888888899999999999999999988765544333
Q ss_pred H
Q 010031 506 Q 506 (520)
Q Consensus 506 ~ 506 (520)
+
T Consensus 162 a 162 (213)
T 1hh8_A 162 A 162 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=2.6e-07 Score=89.22 Aligned_cols=365 Identities=11% Similarity=0.013 Sum_probs=215.1
Q ss_pred cc-CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 010031 41 SN-STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSH-FQSCISH 116 (520)
Q Consensus 41 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~A~~~ 116 (520)
.| ++..|+.+++..+..- |. |+++.+..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777888888776552 22 899999999998765 788899998887777653 4567788
Q ss_pred HHHhhhC-CCCC-CcccHHHHHHHHh----ccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 117 FVFMLRL-SVRP-NRLTYPFVSKSVA----SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 117 ~~~m~~~-~~~p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
|+..... |..| +...|...+..+. ..++.+.+.++|+..++.....-...|......- .......+..++.+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 8887763 5434 4445665555443 2467888999999998732111112333222221 111222233332221
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC-
Q 010031 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKG--D-----LKKAGELFEQMPE- 258 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~- 258 (520)
. +.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|+++..
T Consensus 150 ~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 150 L---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred h---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 0 112222222222211 13345555554433221 1 2345566666543
Q ss_pred --CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC----------
Q 010031 259 --KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND---------- 326 (520)
Q Consensus 259 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------- 326 (520)
.....|...+..+...|+.++|..+|++.... |....+... |....+.+.. ++.+.+.-
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTHH---HHHHHHHTC---------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 23566877888888999999999999999987 433322221 2211111111 22222110
Q ss_pred --CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--hhHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 010031 327 --FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAI-HGRYEQAIQYFKKMMYSGTEPD-GTVF 400 (520)
Q Consensus 327 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~ 400 (520)
......+|...+..+.+.++.+.|+.+|+....|+ ...|...+..-.. .++.+.|..+|+...+.. |+ ...+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 01122456667777777888999999999884332 2334322222222 347999999999998852 43 4455
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...+......|+.+.|..+|+++. .....|...+..-.+.|+.+.+.+++++..
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777778899999999999973 246778888887788899999998887754
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=1.8e-08 Score=79.64 Aligned_cols=116 Identities=11% Similarity=-0.047 Sum_probs=90.1
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|+..++++.. +.++..+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345433 56666777888899999999998887532 34567788888899999999999999988664 34567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
.+..++...|++++|...+++++++.|+++........+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 88888999999999999999999999988877665554443
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=1.4e-08 Score=101.01 Aligned_cols=135 Identities=9% Similarity=-0.068 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4788999999999887 4554 5688899999999999999999999998532 345678899999999999999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+.+++... +.+...+..+..++...|++++|.+.++++++++|+++.++..++.++...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99998765 3457889999999999999999999999999999999999999999999993
No 124
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=4.4e-08 Score=74.27 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...+++... +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3456667777778888888888888877432 34566777888888888888888888887654 3457788888899
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999888877653
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=3.1e-08 Score=81.68 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=105.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH-HhccCCh-
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL-LSRVGQV- 449 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 449 (520)
...|++++|...+++..+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 4568889999999998874 44 55688889999999999999999999988543 3456778888888 7789998
Q ss_pred -HHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 450 -DKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 450 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++|+..++++.. +.+...+..+...+...|++++|...++++++.+|+++.....+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999998765 34577888899999999999999999999999999998776555443
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.7e-08 Score=76.76 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 356667777888888888888888887532 44567888888999999999999999988665 34577888899999
Q ss_pred HHcCCHHHHHHHHHHHhcCC------CCCcchhHHHHhhhhh
Q 010031 476 RTHKDTKIAKIALQSSCSLN------LSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 511 (520)
...|++++|...++++++++ |+++.+...+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999988888877654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=6e-08 Score=84.47 Aligned_cols=139 Identities=10% Similarity=-0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNL 442 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 442 (520)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344566777888888888888877663 45544444555577888999999999886652 11 111 2366778889
Q ss_pred HhccCChHHHHHHHhhCCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 443 LSRVGQVDKALNFINKMPET---PD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
+.+.|++++|++.|++.... |. ...+.....++.+.|+.++|...|+++++.+|+ +.+...|..-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999999987542 32 346677778899999999999999999999998 7777666543
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=4.8e-07 Score=81.38 Aligned_cols=158 Identities=16% Similarity=0.009 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-----C----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 010031 337 LVDMYAKCGNIEAASLVFGETKEK-----D----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLA 402 (520)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 402 (520)
.+..+...|++++|...+++..+. + ...+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999998876541 1 113334666677778999999999999884222 22 236888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhc----CCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-------CCC-HHHHH
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDY----FIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-------TPD-FVIWG 469 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~ 469 (520)
+...|...|++++|..+++++.+.. +..+. ..++..++.+|.+.|++++|++.+++... .+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987421 11122 34788899999999999999999987653 122 56888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhcC
Q 010031 470 ALFCACRTHK-DTKIAKIALQSSCSL 494 (520)
Q Consensus 470 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 494 (520)
.+..++.+.| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 579999999999875
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=4.6e-08 Score=79.49 Aligned_cols=109 Identities=14% Similarity=-0.084 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356666667777777777777777776432 33556777777788888888888888877654 33466778888888
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...|++++|+..++++++++|+++..+...+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 888888888888888888888888855544433
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=7.3e-06 Score=73.92 Aligned_cols=235 Identities=10% Similarity=0.039 Sum_probs=167.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-G-N 346 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 346 (520)
...+.+..++|++++++++..+ +-+...++.--..+...| .++++..+++.+..... -+..+|+.-.-++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3444555678999999998864 334455555555556667 58999999999987663 4666776666666665 6 8
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc---
Q 010031 347 IEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--------QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ--- 412 (520)
Q Consensus 347 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 412 (520)
+++++++++.+.+ +|..+|+-..-.+...|.++ ++++.++++++.... |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8899999998887 35667776666666655555 899999999985432 66688888777777775
Q ss_pred ----HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh--------------------HHHHHHHhhCCC-------
Q 010031 413 ----VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV--------------------DKALNFINKMPE------- 461 (520)
Q Consensus 413 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~------- 461 (520)
++++++.++++.... +-|...|+.+-..+.+.|+. .+..++..++..
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 789999998887532 45567777777777776654 445555555543
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCCcchhHHHHhhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSC-SLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 509 (520)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|.+.+..+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 1567788889999999999999999999997 67998888887776543
No 131
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=9.8e-08 Score=75.84 Aligned_cols=114 Identities=14% Similarity=-0.035 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+...+..+...+...|++++|.+.+++..+ ..|+ ...+..+..+|...|++++|++.+++... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344666667777777777777777777763 2454 56677788888888888888888877654 33567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..++...|++++|...++++++++|+++.++..++.+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8888999999999999999999999999999998888876654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=3.5e-07 Score=82.28 Aligned_cols=162 Identities=14% Similarity=-0.036 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE--K-DL------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--GT 398 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~ 398 (520)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788888888877764332 1 11 2234455666777899999999988875321 122 33
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-C------C-CH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-T------P-DF 465 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~-~~ 465 (520)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|++.+++... . . -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888889999999999999887632111222 25778888999999999999999887653 1 1 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcC
Q 010031 466 VIWGALFCACRTHKDTKIA-KIALQSSCSL 494 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 494 (520)
.++..+..++.+.|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7888888764
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1e-06 Score=79.23 Aligned_cols=150 Identities=7% Similarity=0.006 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGT----VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 436 (520)
...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999987422 22221 2334666677788999999999999852222233 2368
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC-------C-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cch
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE-------T-PD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQA 501 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 501 (520)
+.++.+|...|++++|+..++++.. . +. ..++..+...|.+.|++++|...+++++++.++. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988762 1 11 2377888899999999999999999999876543 678
Q ss_pred hHHHHhhhhhccCC
Q 010031 502 MSYCQTFMQQKGDG 515 (520)
Q Consensus 502 ~~~l~~~~~~~g~~ 515 (520)
+..+|.++...|+.
T Consensus 239 ~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 239 YYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCc
Confidence 89999999999953
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=9.1e-08 Score=80.78 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=99.2
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCcHH
Q 010031 343 KCGNIEAASL---VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 343 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~ 414 (520)
..|++++|.+ .+.........++..+...+...|++++|...+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445667777777778888888887777655 122222 236677777788888888
Q ss_pred HHHHHHHHcHhhcCCCC-C----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCH----HHHHHHHHHHHHcCCH
Q 010031 415 LALNFFDSMRFDYFIEP-S----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDF----VIWGALFCACRTHKDT 481 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~ 481 (520)
+|.+.+++......-.+ + ...+..+..++...|++++|...+++... .++. .++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887654311112 1 34567778888888888888888877542 1222 2356677778888888
Q ss_pred HHHHHHHHHHhcCCC
Q 010031 482 KIAKIALQSSCSLNL 496 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p 496 (520)
++|...+++++++..
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887643
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=1.3e-07 Score=85.83 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhhccCChHHHHH
Q 010031 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV---RA--NDFTVVSALSACAKVGALEAGVR 317 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~ 317 (520)
.+++++|...|. .....|...|++++|...|.+..+... .+ -..++..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 466777666654 346778888888888888887665310 11 12356666667777777777777
Q ss_pred HHHHHHH
Q 010031 318 VHNYISC 324 (520)
Q Consensus 318 ~~~~~~~ 324 (520)
.+++..+
T Consensus 98 ~~~~Al~ 104 (307)
T 2ifu_A 98 YIEKASV 104 (307)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=3.7e-08 Score=78.24 Aligned_cols=88 Identities=8% Similarity=-0.082 Sum_probs=79.1
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 429 IEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 429 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+.|+ ...+..+...+.+.|++++|+..|+++.. +.++..|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3454 45778889999999999999999999775 45688999999999999999999999999999999999999999
Q ss_pred HhhhhhccCCC
Q 010031 506 QTFMQQKGDGR 516 (520)
Q Consensus 506 ~~~~~~~g~~~ 516 (520)
|.+|.+.|+.+
T Consensus 111 g~~~~~lg~~~ 121 (151)
T 3gyz_A 111 GQCQLRLKAPL 121 (151)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 99999999855
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=7.7e-08 Score=88.31 Aligned_cols=145 Identities=12% Similarity=-0.054 Sum_probs=109.4
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTA 406 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~ 406 (520)
++++|...++.... | +...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 2 4567888889999999999999999999884 454 3688888888
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
+.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|+..|+++.. +.+...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998887532 34567888888888888999999888888654 34566788888888888888888
Q ss_pred -HHHHHHHhcC
Q 010031 485 -KIALQSSCSL 494 (520)
Q Consensus 485 -~~~~~~~~~~ 494 (520)
...++++++.
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777754
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=3e-07 Score=82.70 Aligned_cols=153 Identities=7% Similarity=0.001 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC--CCC--hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-G----TVFLAILTACWYSGQVKLALNFFDSMRFDYFI--EPS--VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 434 (520)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|+..+++......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999999887532211 1 12344555677889999999999988642211 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC----CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC------Cc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE----TPD-----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS------IP 499 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 499 (520)
+++.++..|...|++++|+..++++.. .|+ ..++..+..+|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788999999999999999999988652 222 257888899999999999999999999986543 25
Q ss_pred chhHHHHhhhhhccCCC
Q 010031 500 QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 500 ~~~~~l~~~~~~~g~~~ 516 (520)
.++..+|.+|...|+.+
T Consensus 237 ~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCcH
Confidence 67889999999999865
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=5e-08 Score=87.15 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 371 (520)
+...+..+...+...|++++|...++...+... .+...+..+..+|...|++++|...++...+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777888889999999999999999988753 4778888999999999999999999998776 356788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+...|++++|...|++..+. .|+.. .+...+....+. .++..... .. ....+.+..+...+...+ .|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNS-IE-ERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHH-HH-HTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHH-HH-HHHHhhhHHHHHHHHHHH--HHHHH
Confidence 99999999999999998873 44321 122222222211 11222211 22 123355555555554433 68999
Q ss_pred HHHHHHhhCCC-CCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC
Q 010031 451 KALNFINKMPE-TPDFV-IWGALFCACRTH-KDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 496 (520)
+|++.+++... .|+.. ....+...+.+. +.+++|.++|+++.+..+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999988765 45544 334444445444 678899999999987543
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=2.4e-06 Score=76.30 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=158.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHH----HHc---CC
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGL----AIH---GR 377 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 377 (520)
...++|+..++.++..+. -+..+++.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 344688999999887763 35566777777888888 99999999998876 3556777665555 555 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH--HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC------h
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK--LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ------V 449 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 449 (520)
+++++.+++++.+.. +-+..+|..-...+...|.++ ++++.++++.+.. +-|...|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999853 226668888888888888888 9999999998643 4567788877777777776 8
Q ss_pred HHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcCC---CCCcchhHHHHhhhhhccCCC
Q 010031 450 DKALNFINKMPE--TPDFVIWGALFCACRTHKDT-KIAKIALQSSCSLN---LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++++.++++.. +-|...|+.+...+.+.|+. +......+++++++ |.++.++..++.++.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 899999988664 45678899999888888874 44667888888776 889999999999999887643
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=2e-07 Score=72.98 Aligned_cols=114 Identities=11% Similarity=-0.111 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHH
Q 010031 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFC 473 (520)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 473 (520)
+...+..+...+...|++++|...+++..... +.+...+..+..+|...|++++|+..+++... +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45577777778888888888888888877532 34466778888888888888888888887654 345678888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCC-----CcchhHHHHhhhhh
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLS-----IPQAMSYCQTFMQQ 511 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~ 511 (520)
++...|++++|...+++++++.|+ +......+..+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988887 56666555555443
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.64 E-value=1.2e-07 Score=72.32 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=73.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRT 477 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 477 (520)
+..+...+.+.|++++|+..+++..+.. +.+...|..+..++.+.|++++|+..+++... .| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4445566778888888988888887532 34567788888888899999999999988665 34 56788888888999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcc
Q 010031 478 HKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
.|++++|+..++++++.+|+++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=2.5e-07 Score=75.11 Aligned_cols=130 Identities=12% Similarity=-0.055 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
...+..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...+++..... +.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 456788888999999999999999999884 44 56688888899999999999999999988532 44567888999
Q ss_pred HHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhcCC
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TPDFVIWGALFC--ACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.++.+.|++++|.+.++++.. +.+...+..+.. .+...|++++|...+++..++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999998765 334555544443 4778899999999999887643
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.6e-07 Score=83.81 Aligned_cols=189 Identities=8% Similarity=-0.060 Sum_probs=115.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..+..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456677778888888888888888887753 3366777777888888888888888888887654 34566777788888
Q ss_pred HhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
...|++++|...|+...+ | +...+...+....+. ..+. -+..........+......+ ..+ ..|++++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 888888888888877665 2 111111112111111 1111 11222223233343333333 222 2678888888
Q ss_pred HHHHcHhhcCCCCCh-hHHHHHHHHHhcc-CChHHHHHHHhhCCC
Q 010031 419 FFDSMRFDYFIEPSV-KHHTVVVNLLSRV-GQVDKALNFINKMPE 461 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 461 (520)
.++...+ ..|+. .....+...+.+. +++++|.++|+++..
T Consensus 157 ~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8777663 24443 3334444445554 567788888887664
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=7.4e-07 Score=72.25 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTAC 407 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 407 (520)
..+..+...+...|++++|...|+...+ .+...+..+..++...|++++|...+++..+. .| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3455566667777777777777776543 34566677777777777777777777777663 33 344666667777
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHH--HHHHHHHhccCChHHHHHHHhhC
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
...|++++|...++++.... +.+...+ ...+..+.+.|++++|++.+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776432 2233333 23333356667777777776653
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=2.8e-07 Score=77.48 Aligned_cols=153 Identities=11% Similarity=-0.034 Sum_probs=84.0
Q ss_pred HHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
....|.++++.+.++..... ....+..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 33445566665555543321 3345666667777777777777777777763 2321100000 000000
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.. .....+..+..+|.+.|++++|+..++++.. +.+...+..+..++...|++++|+..++++++++
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 0124555666666677777777777666543 3345666667777777777777777777777777
Q ss_pred CCCcchhHHHHhhhhhccC
Q 010031 496 LSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~ 514 (520)
|+++.++..++.++...|+
T Consensus 153 p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7777777777777766554
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=1.2e-06 Score=76.27 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=86.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----cccHHHHHHHHHhCCC
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNGE 276 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 276 (520)
.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++...|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 355667778888888888887765 443355555567778888888888887655432 2356677788888888
Q ss_pred hhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCC
Q 010031 277 AEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDF 327 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (520)
+++|+..|++.......|. .........++.+.|+.++|..+|+++.....
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8888888888774332243 23455566677788888888888888877653
No 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=2.4e-07 Score=71.62 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--C---CC----HHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--T---PD----FVIWG 469 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~~ 469 (520)
.+..+...+...|++++|...+++..... +.+...+..+..+|...|++++|...++++.. + ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45555566666677777777776665421 33455666667777777777777777766543 1 11 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+..++...|++++|...++++++..| ++.....++.+....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999888 57888888877766554
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.6e-06 Score=72.98 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEP--DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---- 432 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 432 (520)
.++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++......-..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 45667777888888888888888876652 1122 1236777778888899999999988887642211122
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..++..+..++...|++++|.+.+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2345778888999999999998887743
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=3.4e-08 Score=78.59 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
+...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++++|+++.++..+|.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 355777889999999999999999998764 457888999999999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
...|+.+
T Consensus 100 ~~~g~~~ 106 (148)
T 2vgx_A 100 LQXGELA 106 (148)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 9999854
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.58 E-value=1.7e-06 Score=84.90 Aligned_cols=167 Identities=8% Similarity=-0.024 Sum_probs=134.1
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGR----------YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG 411 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 411 (520)
..++|.+.++.+.. | +..+|+.-..++...|+ +++++..++++.+. .| +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566666666654 2 44567766666666666 89999999999984 45 5558988888888899
Q ss_pred --cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc--------
Q 010031 412 --QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-QVDKALNFINKMPE--TPDFVIWGALFCACRTH-------- 478 (520)
Q Consensus 412 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-------- 478 (520)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++.. +-+...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999998642 556788888888888889 89999999999876 34677898888877663
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 479 ------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 479 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.++++++.+++++..+|++.++|.+++.++.+.|...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 56899999999999999999999999999999887743
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=1.3e-05 Score=71.94 Aligned_cols=230 Identities=10% Similarity=-0.011 Sum_probs=152.7
Q ss_pred HhCCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCC----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 272 SQNGEAE-KALAMFFQMLDAGVRANDF-TVVSALSACAKVGA----------LEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 272 ~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
.+.|.++ +|+.++..++.. .|+.. .++.--..+...+. ++++..+++.+....+ -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455544 677777777764 34333 33322222222221 5677778888776653 46667766666
Q ss_pred HHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 010031 340 MYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR-YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS--- 410 (520)
Q Consensus 340 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 410 (520)
++...+ .++++.++++.+.+ .|..+|+.-.-.+...|. ++++++.+.++++..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 666666 47888888887775 466788877777778887 58999999999885432 555776665555444
Q ss_pred -----------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc-----------CChHHHHHHHhhCCC-CCCHHH
Q 010031 411 -----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV-----------GQVDKALNFINKMPE-TPDFVI 467 (520)
Q Consensus 411 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~-~~~~~~ 467 (520)
+.++++++.+....... |-|...|+.+-..+.+. +.++++++.++++.+ .||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 56888999998887532 44566676565555554 457888888888765 5654 3
Q ss_pred HHHHHHH-----HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 468 WGALFCA-----CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 468 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
|..+..+ ....|..++....+.++.+++|-....|..+..-
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4433222 2246788899999999999999988888776543
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=2.5e-07 Score=71.26 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-C----CC----HHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-T----PD----FVIWG 469 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~----~~----~~~~~ 469 (520)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++... . ++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44455555666666666666666655321 22344556666666666666666666665442 1 11 13556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+..++...|++++|++.|+++++..|+ |.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 6777788888888888888888887774 4444433
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=4.8e-07 Score=82.99 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=106.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----------------hhHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD----------------LLTWTAMIWG 371 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~ 371 (520)
+++++|...++...+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444332221 12456677788888899999999998887664 32 4678888889
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+.+.|++++|+..++++++. .| +...+..+..++...|++++|+..|+++.+.. +.+...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998884 45 45588888888999999999999999887532 334567888888888888888
Q ss_pred HH-HHHHhhCC
Q 010031 451 KA-LNFINKMP 460 (520)
Q Consensus 451 ~A-~~~~~~~~ 460 (520)
+| .+.+++|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88 44555543
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=2.2e-07 Score=75.28 Aligned_cols=81 Identities=6% Similarity=-0.085 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc-chhHHHHhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP-QAMSYCQTFM 509 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 509 (520)
...|..+..+|.+.|++++|+..++++.. +.+...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45788889999999999999999988765 44577899999999999999999999999999999998 6666666665
Q ss_pred hhcc
Q 010031 510 QQKG 513 (520)
Q Consensus 510 ~~~g 513 (520)
...+
T Consensus 143 ~~~~ 146 (162)
T 3rkv_A 143 ERRA 146 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 156
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=6.7e-07 Score=68.70 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+...+..+.+.|++++|+..|++.++. .| +...|..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHH
Confidence 4555667777777777777777777763 44 34467777777777777777777777776421 3345567777777
Q ss_pred HhccCChHHHHHHHhhCCC-CC-CHHHHHHH
Q 010031 443 LSRVGQVDKALNFINKMPE-TP-DFVIWGAL 471 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l 471 (520)
|...|++++|++.|++... .| +...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 7777777777777777554 33 33444433
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=2.1e-07 Score=69.67 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=70.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CC--CHHHHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TP--DFVIWGALFCA 474 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~~ 474 (520)
.+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|++.+++... +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 45556666777777777777777776432 33456677777777778888888877777543 23 46677777778
Q ss_pred HHHc-CCHHHHHHHHHHHhcCCCCCc
Q 010031 475 CRTH-KDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 475 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+... |++++|.+.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888765
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=8.5e-07 Score=68.42 Aligned_cols=109 Identities=12% Similarity=-0.058 Sum_probs=80.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALFC 473 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~ 473 (520)
.+...+...|++++|...++.+.+.. +.+. ..+..+..+|.+.|++++|+..++++.. .|+ +..+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34456667788888888888877532 2222 3667778888888888888888887654 233 556777888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
++...|++++|...++++++..|+++.+......+-.-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 899999999999999999999999888777666555443
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=2.8e-06 Score=64.72 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.... +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3456666667777777777777777776642 2244566667777777777777777777776422 344556667777
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHH
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRT 477 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 477 (520)
+|.+.|++++|...++++.. +.+...+..+..++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777776543 2334455555544443
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=8.3e-08 Score=72.86 Aligned_cols=106 Identities=8% Similarity=-0.056 Sum_probs=78.2
Q ss_pred ccCcHHHHHHHHHHcHhhcC-CCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
..|++++|+..|++..+... -+.+...+..+..+|.+.|++++|++.++++.. +.+...+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888874210 122346778888889999999999999988765 345778888889999999999999
Q ss_pred HHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 486 IALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
..++++++..|+++....+...+....++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999998887766666555444
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=7.9e-07 Score=85.34 Aligned_cols=144 Identities=12% Similarity=-0.019 Sum_probs=89.1
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTA 406 (520)
Q Consensus 346 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~ 406 (520)
++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 13456778888888999999999999988873 343 3566666677
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A 484 (520)
+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|+++.. .| +...+..+..++.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766421 33455666677777777777777777776544 23 344566666666666666655
Q ss_pred H-HHHHHHhc
Q 010031 485 K-IALQSSCS 493 (520)
Q Consensus 485 ~-~~~~~~~~ 493 (520)
. ..+++++.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 4 34444443
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=2.5e-06 Score=76.90 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=127.5
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-C-cHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYS-G-QVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-g-~~~~a~ 417 (520)
+..++|+++++.+.. .+..+|+.-...+...| .+++++.+++.+... .| +..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344566666666554 24456777777777777 589999999999884 44 445777776666665 6 788999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChH--------HHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC-------
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD--------KALNFINKMPE--TPDFVIWGALFCACRTHKD------- 480 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~------- 480 (520)
++++++.+. -+.+...|+.-..++.+.|.++ ++++.++++.. +-|...|+.....+.+.|.
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 999988742 2456677777777777766666 88888888765 3467789888888888776
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
++++++.++++++.+|+|.++|.++..++.+.|.+
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999988876
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=2e-06 Score=66.20 Aligned_cols=115 Identities=14% Similarity=0.012 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...+++..... +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 345666667777777777777777777763 33 45567777777777777888877777776432 33456677777
Q ss_pred HHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKD 480 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 480 (520)
.++.+.|++++|.+.+++... +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777888888777777544 2345666666666666655
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=1.8e-06 Score=66.85 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 3456777777788888888888888887763 34 45577777777888888888888888877532 3456677778
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK 479 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g 479 (520)
..+|.+.|++++|++.+++... .| +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888877654 33 3445666666665554
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.1e-07 Score=76.49 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh----------------
Q 010031 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDL---------------- 362 (520)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---------------- 362 (520)
........|+++.+.+.+..-.... ......+..+...+...|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444455667777776665332211 12345567788889999999999999987654 222
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|..+..++...|++++|+..+++..+. .| +...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 45566666666666666666666666663 33 33456666666666666666666666665321 223445555555
Q ss_pred HHhccCChHHHH
Q 010031 442 LLSRVGQVDKAL 453 (520)
Q Consensus 442 ~~~~~g~~~~A~ 453 (520)
++...++.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=4.8e-07 Score=83.03 Aligned_cols=132 Identities=15% Similarity=0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT------------------VFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
+..+...+.+.|++++|...|++... +.|+.. .|..+..++.+.|++++|+..+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555566666666666666655 234432 6667777777888888888888877642
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCA-CRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
. +.+...|..+..+|...|++++|+..|+++.. .|+ ...+..+... ....+..+++...|+++++..|+++.
T Consensus 260 ~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 260 E--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 2 33566777788888888888888888887765 343 3445555544 33456667777888888888777654
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=5.9e-07 Score=70.52 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--------TPD-FVIW----GALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
.|..+..++.+.|++++|+..+++... .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 677777777777777777777666431 455 4578 889999999999999999999999999999988
Q ss_pred hHHHHhhhh
Q 010031 502 MSYCQTFMQ 510 (520)
Q Consensus 502 ~~~l~~~~~ 510 (520)
..-+..+-.
T Consensus 139 ~~~~~~~~~ 147 (159)
T 2hr2_A 139 TPGKERMME 147 (159)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=2e-06 Score=66.09 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-CCCC----hhHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-IEPS----VKHHT 437 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 437 (520)
.+..++..+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.+++..+... ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 466677788888888888888888887 4554 44777788888888888888888888764211 1111 23566
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHH
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGA 470 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ 470 (520)
.+..++...|++++|++.|++... .|++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 777888888888888888887554 566654443
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=9.1e-07 Score=71.25 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 434 (520)
++..+...+...|++++|...+++..+.... ++. .++..+...+...|++++|.+.+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5666777777788888888888776652111 111 36677777888888888888888887642211111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+..+..++...|++++|.+.+++... ..+ ...+..+...+...|++++|...+++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 667788888889999999888887543 112 345677778889999999999999999876543
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=5.9e-07 Score=70.83 Aligned_cols=84 Identities=12% Similarity=-0.013 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++++|+++..+..+|.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45667788899999999999999998764 4467889999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 010031 511 QKGDGR 516 (520)
Q Consensus 511 ~~g~~~ 516 (520)
..|+.+
T Consensus 98 ~~g~~~ 103 (142)
T 2xcb_A 98 QLGDLD 103 (142)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 999854
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=2.2e-07 Score=76.57 Aligned_cols=108 Identities=6% Similarity=-0.027 Sum_probs=89.8
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH-HHHcCCH--
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA-CRTHKDT-- 481 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~-- 481 (520)
+...|++++|...+++..... +.+...+..+..+|...|++++|+..++++.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999987542 45667899999999999999999999999765 4567788888888 7899998
Q ss_pred HHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++.+|+++.++..++.++...|+.+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 132 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999999999998854
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.40 E-value=9.3e-07 Score=82.05 Aligned_cols=132 Identities=8% Similarity=-0.097 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
..+..+...+.+.|++++|+..|++.++. .|... ..... +..... -+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAKL--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHHH--HHHHHHHHHHHHHH
Confidence 34666777777778888888777777651 11110 00011 111100 02235678889999
Q ss_pred HhccCChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 443 LSRVGQVDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|.+.|++++|++.++++.. . .+...|..+..++...|++++|+..++++++++|+++.++..++.++...++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 3 45778889999999999999999999999999999999999999998877653
No 173
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.1e-06 Score=65.55 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhH
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMS 503 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 503 (520)
+...+..+...+.+.|++++|++.+++... +.+...|..+..++...|++++|+..++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888899999999999988654 3467788889999999999999999999999999998 88888
Q ss_pred HHHhhhhhccCCC
Q 010031 504 YCQTFMQQKGDGR 516 (520)
Q Consensus 504 ~l~~~~~~~g~~~ 516 (520)
.++.++...|+.+
T Consensus 83 ~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 83 RLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhHh
Confidence 9999999888754
No 174
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=6e-07 Score=69.06 Aligned_cols=84 Identities=8% Similarity=-0.117 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..++++++++|+++.++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45677888999999999999999998765 4567899999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 010031 511 QKGDGR 516 (520)
Q Consensus 511 ~~g~~~ 516 (520)
..|+.+
T Consensus 84 ~~~~~~ 89 (126)
T 3upv_A 84 AVKEYA 89 (126)
T ss_dssp HTTCHH
T ss_pred HHhCHH
Confidence 999854
No 175
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.37 E-value=9.2e-07 Score=63.30 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..+++... +.+...+..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888899999999999988654 3457788889999999999999999999999999999999999999988
Q ss_pred hcc
Q 010031 511 QKG 513 (520)
Q Consensus 511 ~~g 513 (520)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.1e-05 Score=76.94 Aligned_cols=159 Identities=12% Similarity=0.001 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KDL----LTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPDG-TVF 400 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~ 400 (520)
..++..|...|++++|.+.+..+.+ ++. .+.+.+...+...|+++.|..++++... .+..+.. .++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3455556666666666655555433 111 1222233333345667777766666543 2333333 366
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC-----HHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD-----FVI 467 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~ 467 (520)
..+...+...|++++|..+++.+.....-..+ ..++..++..|...|++++|..++++... .++ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 66777777777777777777766532211111 34566677777777777777777765432 111 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+..+...+...|++++|...+.++++
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455556667777777777777765
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=8.5e-07 Score=67.56 Aligned_cols=82 Identities=10% Similarity=0.010 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..+...+.+.|++++|+..++++.. +.+...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455678889999999999999999765 346788999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 010031 513 GDGR 516 (520)
Q Consensus 513 g~~~ 516 (520)
|+.+
T Consensus 99 g~~~ 102 (121)
T 1hxi_A 99 HNAN 102 (121)
T ss_dssp HHHH
T ss_pred CCHH
Confidence 8744
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=1.3e-06 Score=84.12 Aligned_cols=98 Identities=9% Similarity=-0.115 Sum_probs=45.3
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.++++.. +.+...|..+..++...|++++|+.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444311 12234444444444455555555544444332 1233444444445555555555555
Q ss_pred HHHHHhcCCCCCcchhHHHHhh
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.++++++++|+++.++..++.+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555555544444
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1.9e-05 Score=59.30 Aligned_cols=106 Identities=10% Similarity=-0.056 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..+..++..+...|++++|...|++.... .| +...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 45666777778888888888888888774 34 45577777778888888888888888877532 334667777888
Q ss_pred HHhccCChHHHHHHHhhCCC-CC-CHHHHHHHH
Q 010031 442 LLSRVGQVDKALNFINKMPE-TP-DFVIWGALF 472 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 472 (520)
++...|++++|.+.+++... .| +...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888888888888887654 33 344444443
No 180
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=2.3e-06 Score=66.77 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
+.+...+..+...+...|++++|+..+++... +.+...|..+..++...|++++|...++++++++|+++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 44677888999999999999999999998764 4457889999999999999999999999999999999999999999
Q ss_pred hhhhccCCC
Q 010031 508 FMQQKGDGR 516 (520)
Q Consensus 508 ~~~~~g~~~ 516 (520)
++...|+.+
T Consensus 86 ~~~~~~~~~ 94 (137)
T 3q49_B 86 CQLEMESYD 94 (137)
T ss_dssp HHHHTTCHH
T ss_pred HHHHHhhHH
Confidence 999998854
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.1e-05 Score=74.99 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-C--CCC--h
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--GT--EPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYF-I--EPS--V 433 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~--~~~--~ 433 (520)
++..++..+...|++++|..+++++... +. .|.. .++..++..|...|++++|..++++...... + ++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666665432 11 1211 2566666667777777777777666543111 1 111 2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
..+..++..+...|++++|...+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555566666677777766655443
No 182
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=7.1e-06 Score=66.34 Aligned_cols=93 Identities=13% Similarity=-0.029 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4444455555555555555555555552 23 33355555555555555555555555554321 2234455555555
Q ss_pred HhccCChHHHHHHHhhCC
Q 010031 443 LSRVGQVDKALNFINKMP 460 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (520)
|.+.|++++|++.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555543
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=7.3e-05 Score=67.11 Aligned_cols=195 Identities=11% Similarity=0.022 Sum_probs=138.6
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010031 308 KVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------IEAASLVFGETKE---KDLLTWTAMIWGLA 373 (520)
Q Consensus 308 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 373 (520)
+.|.+ ++|......+...++ -+..+|+.--.++...+. ++++..+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 478899998887653 233445433333333222 5778888887765 46778888888888
Q ss_pred HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc----
Q 010031 374 IHG--RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ-VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---- 446 (520)
Q Consensus 374 ~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 446 (520)
..+ ++++++.++.++.+... -|...|+.-...+...|. ++++++.++++.+.. +-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 888 48999999999998532 266688887777778887 689999999998643 45666777666666554
Q ss_pred ----------CChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 447 ----------GQVDKALNFINKMPE--TPDFVIWGALFCACRTH-----------KDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 447 ----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
+.++++++.+.+... +.|...|+.+-..+.+. +.++++++.++++++++|++.-++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 457888998888664 45677888776666555 4689999999999999999854444
Q ss_pred HHH
Q 010031 504 YCQ 506 (520)
Q Consensus 504 ~l~ 506 (520)
.++
T Consensus 277 ~~~ 279 (331)
T 3dss_A 277 TII 279 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=6.1e-07 Score=86.48 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=76.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (520)
.+...|++++|+..|++..+. .|+ ..++..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 344567777777777777663 443 4466777777777777777777777776421 23455666777777777777
Q ss_pred HHHHHHHhhCCC-CC-CHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhcCCCCCcc
Q 010031 450 DKALNFINKMPE-TP-DFVIWGALFCA--CRTHKDTKIAKIALQ-----------SSCSLNLSIPQ 500 (520)
Q Consensus 450 ~~A~~~~~~~~~-~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~ 500 (520)
++|++.++++.. .| +...+..+..+ +.+.|++++|++.++ ++++++|+...
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 777777776543 22 23344444444 666777777777777 66666665443
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=1.9e-06 Score=79.04 Aligned_cols=110 Identities=8% Similarity=-0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh------------------HHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK------------------HHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
.+..+...+.+.|++++|...|++.... .|+.. .|..+..+|.+.|++++|+..++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666777888999999999999998752 35433 78899999999999999999999876
Q ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 461 E--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 461 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
. +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5 34678999999999999999999999999999999999999999888544
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.4e-05 Score=63.05 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 445666667777777777777777777776 3555 3466666677777777777777777766421 3345566
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..+..+|...|++++|...+++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777777776543
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=2.5e-06 Score=63.61 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CcchhHHHHh
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS--IPQAMSYCQT 507 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 507 (520)
+...+..+...+.+.|++++|+..++++.. +.+...|..+..++...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 456778899999999999999999998764 456778999999999999999999999999999999 9999999999
Q ss_pred hhhhc-cCCCc
Q 010031 508 FMQQK-GDGRT 517 (520)
Q Consensus 508 ~~~~~-g~~~~ 517 (520)
++... |+.+.
T Consensus 85 ~~~~~~~~~~~ 95 (112)
T 2kck_A 85 ALRYIEGKEVE 95 (112)
T ss_dssp HHTTCSSCSHH
T ss_pred HHHHHhCCHHH
Confidence 99999 88653
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=7.8e-06 Score=62.85 Aligned_cols=111 Identities=11% Similarity=-0.019 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC-CCC----hhHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPS----VKHHT 437 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 437 (520)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.....- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777778888888887777642 224556777777777778888888877777643211 111 55667
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCA 474 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 474 (520)
.+..+|.+.|++++|.+.++++.. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777888888888888877554 4555555544443
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.17 E-value=2e-06 Score=67.38 Aligned_cols=96 Identities=8% Similarity=-0.071 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh----------HHHHHHHhhCCC-CC-CHHHHHHHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV----------DKALNFINKMPE-TP-DFVIWGALFCACRT 477 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 477 (520)
.+.+++|.+.++...+.. +.+...|..+..++.+.|++ ++|+..|++... .| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344555555555554321 22344555555555554443 466666666543 33 35566666666665
Q ss_pred c-----------CCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 478 H-----------KDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 478 ~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
. |++++|+..|+++++++|+++.....+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4 58999999999999999998877665543
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=1.2e-05 Score=77.19 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---------------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
....+..+...|.+.|++++|...|++..+ | + ...|..+..++.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788888999999999999987765 3 2 467888889999999999999999999884
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHH-HHhhCCC
Q 010031 392 GTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALN-FINKMPE 461 (520)
Q Consensus 392 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 461 (520)
.| +...|..+..+|...|++++|+..|+++.+ +.| +...+..+..++.+.|+.+++.+ .+++|..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 455888888899999999999999999875 234 45678888888888888887764 4555553
No 191
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=4.2e-05 Score=58.62 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHH
Q 010031 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVV 439 (520)
Q Consensus 367 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 439 (520)
.+...+...|++++|...|+++.+. .|+. ..+..+..++...|++++|...++++.... +.+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 3455566677777777777777663 2322 255566666777777777777777766432 122 3456666
Q ss_pred HHHHhccCChHHHHHHHhhCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..+|.+.|++++|...++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=2e-05 Score=63.16 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 434 (520)
++..+...+...|++++|...+++..+. +-.+. ...+..+...+...|++++|.+.+++......-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5566666777777777777777766542 11111 235666667777788888888877776532110111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+..+..+|...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667777888888888888877764
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=4.6e-05 Score=59.31 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVD 450 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 450 (520)
.+++++|...|++..+.| .|+.. +...|...+.+++|.++|++..+ . -++..+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 357899999999999987 44443 66677777889999999999885 2 456777888888887 78999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 451 KALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+|+++|++.....++..+..+...|.. .++.++|...++++.+.. ++.+...++
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999998766788888999999988 899999999999998873 344444443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=9e-06 Score=63.81 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CCCCcchh----HHHHhhhhhccCCC
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSL-------NLSIPQAM----SYCQTFMQQKGDGR 516 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~ 516 (520)
...|..+..++.+.|++++|+..+++++++ +|+++.+| ...|.++...|+.+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 348999999999999999999999999999 99999999 99999999998844
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=5.3e-05 Score=60.93 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--------GT--------EPDG-TVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
.+......+.+.|++++|+..|++.+.. .. .|.. ..|..+..++...|++++|+..++++...
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666677777777777777776652 00 2332 36777788888888888888888888753
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD 464 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 464 (520)
. +.+...|..+..+|...|++++|+..|++... .|+
T Consensus 93 ~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 E--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred C--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 2 34566788888888888888888888887654 444
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=2.2e-05 Score=58.94 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
|++.+++..+.. +.+...+..+..+|.+.|++++|+..+++... +.+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566655321 33456677777777777777777777777554 33456777777778888888888888888887
Q ss_pred CCCCC--cchhHHHHhhhhhcc
Q 010031 494 LNLSI--PQAMSYCQTFMQQKG 513 (520)
Q Consensus 494 ~~p~~--~~~~~~l~~~~~~~g 513 (520)
+.|++ ......+...+...|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 77643 334444555554444
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.93 E-value=0.00024 Score=64.06 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=95.9
Q ss_pred ChhHHHHHHHHH--HHcC---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc---cC-----cHHHHHHHHHHcHhh
Q 010031 361 DLLTWTAMIWGL--AIHG---RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWY---SG-----QVKLALNFFDSMRFD 426 (520)
Q Consensus 361 ~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~~ 426 (520)
+...|...+++. ...+ +..+|..+|++.++ ..|+.. .+..+..++.. .+ ........++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 455555555443 2333 35788999999988 577754 44444444321 11 111111122221111
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
...+.++.+|..+...+...|++++|+..++++.. .|+...|..+...+.-.|++++|.+.+++++.++|..+ .+.+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 22256677888888888888999999999999776 68888888888889999999999999999999999876 44444
Q ss_pred Hh
Q 010031 506 QT 507 (520)
Q Consensus 506 ~~ 507 (520)
..
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 33
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00013 Score=71.59 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=113.8
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCc----------HHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 374 IHGR-YEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQ----------VKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 374 ~~~~-~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.|. .++|++.++++.. +.|+.. +|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-..
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444 5788999999998 567654 67766666666666 999999999998643 556778888888
Q ss_pred HHhccC--ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 442 LLSRVG--QVDKALNFINKMPE--TPDFVIWGALFCACRTHK-DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 442 ~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.+.| +++++++.++++.+ +.+...|+.-..++.+.| .++++++.++++++.+|+|.++|.+.+.++...+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 999999 67999999999876 457889999999999999 9999999999999999999999999999998853
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=7.9e-05 Score=69.03 Aligned_cols=91 Identities=10% Similarity=-0.026 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE-------------------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 392 (520)
..+..+...+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|+..+++.++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 4567788899999999999999876554 0123344444444444444444444444444
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 393 TEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 393 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
+.|+ ...+..+..++...|++++|++.++++.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2222 2244444444444444444444444444
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=2.9e-05 Score=56.56 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=56.7
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhHHHH
Q 010031 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMSYCQ 506 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~ 506 (520)
-+...+..+..+|.+.|++++|++.|+++.. +.+...|..+..++...|++++|+..+++++++.|++ ......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 3455677777777788888888888777654 2345677777777888888888888888888776643 34444555
Q ss_pred hhhhhccC
Q 010031 507 TFMQQKGD 514 (520)
Q Consensus 507 ~~~~~~g~ 514 (520)
.++...++
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55554443
No 201
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=3.7e-05 Score=57.89 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.+..+..++...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555442 222 23444444455555555555555555443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=1.4e-05 Score=59.49 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-------hh
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-------VK 434 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~ 434 (520)
..+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|++.+++..+ +.|+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 34555555666666666666666666553 33 334555555566666666666666666553 2333 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+..+..++...|++++|++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3444444555555555444444443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.71 E-value=8.5e-05 Score=53.79 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-C-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-T-PDFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.+..+.+.|++++|++.++++.. . .+.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455666777777777666543 2 3445 666666667777777777777777777777777666
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.0001 Score=70.58 Aligned_cols=123 Identities=8% Similarity=-0.047 Sum_probs=81.8
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhHHHH
Q 010031 372 LAIHGRYEQAIQYFKKMMYS---GTE---PDG-TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKHHTV 438 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~---~~~---p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~ 438 (520)
+...|++++|+.++++..+. -+. |+. .+++.|...|...|++++|..++++..+- .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777776542 122 222 27777888888888888888877776431 11 1222 356788
Q ss_pred HHHHHhccCChHHHHHHHhhCCC---------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE---------TPDF-VIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
|..+|...|++++|+.+++++.. .|+. .+...+..++...|.+++|+..+.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877543 1332 23445556677888888899888888763
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.57 E-value=0.00021 Score=55.31 Aligned_cols=100 Identities=11% Similarity=-0.089 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC---ChHHHHHHHhhCCC-C-C--CHHHHHHHHHHHHHcCCHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QVDKALNFINKMPE-T-P--DFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~g~~~~ 483 (520)
+....+.+.|.+..+ .+ +++..+...+..++++.+ +.++++.++++... . | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566666666653 22 467777788888898888 66688888887654 3 4 24566777788999999999
Q ss_pred HHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 484 AKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
|.+.++++++.+|++..+......+-...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988766555443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.0013 Score=51.01 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAAS 351 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 351 (520)
++++|+++|++..+.| .|+.. +...|...+.+++|...|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 33332 4455555566666666666666553 34444445444444 34444444
Q ss_pred HHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010031 352 LVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMY 390 (520)
Q Consensus 352 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 390 (520)
+.|++..+ .+...+..|...|.. .+++++|...|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 44443332 233344444444444 3444444444444444
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.56 E-value=0.00015 Score=53.12 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
..-...++..+.+.|+++.|...++.+.. .+...++..+..++.+.|++++|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444566667777777777777665432 134567889999999999999999999999999999999977
Q ss_pred HHHhh
Q 010031 504 YCQTF 508 (520)
Q Consensus 504 ~l~~~ 508 (520)
.+..+
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77633
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00013 Score=54.64 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 451 KALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 451 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|++.+++... +.+...+..+..++...|++++|+..++++++.+|+++.++..+|.++...|+.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 46666766543 3467889999999999999999999999999999999999999999999999854
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.00024 Score=67.97 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHhcCCHHHHHHHHhcCCC-------C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHH
Q 010031 341 YAKCGNIEAASLVFGETKE-------K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-----G-TEPDGT-VFLA 402 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~~~-~~~~ 402 (520)
+...|++++|..++++... + + ..+++.|+.+|...|++++|+.++++..+- | -.|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455666666655544332 1 1 246778888888888888888888876541 2 123333 7888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHh----hcCC-CCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 403 ILTACWYSGQVKLALNFFDSMRF----DYFI-EPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|...|...|++++|..++++..+ ..|- .|+ ..+.+.+..++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998887753 1221 122 34566777888888899999999887653
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.42 E-value=0.00087 Score=47.57 Aligned_cols=72 Identities=6% Similarity=-0.143 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 430 EPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+.++..+..+..++...++ .++|..++++... . .++.....+...+.+.|++++|+..|+++++.+|+++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 4567777788887765444 7899999998765 3 456778888888999999999999999999999985554
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00036 Score=50.62 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...+..+..++...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555552 232 2345555555555555555555555544
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0012 Score=46.44 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..+++..+. .| +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4455555566666666666666666553 23 33455555556666666666666666655321 2233444444444
Q ss_pred Hh
Q 010031 443 LS 444 (520)
Q Consensus 443 ~~ 444 (520)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00064 Score=63.90 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=66.5
Q ss_pred cCcHHHHHHHHHHcHhh--cCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCC-HHHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFD--YFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPD-FVIWGALFC 473 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~ 473 (520)
.|++++|..++++..+. .-+.|+ ..+++.|+.+|...|++++|+.+++++.. .|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665432 112222 35677888888888888888888877543 244 236788888
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----CCCCCcchhHH
Q 010031 474 ACRTHKDTKIAKIALQSSCS-----LNLSIPQAMSY 504 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 504 (520)
.|...|++++|+.+++++++ +.|++|.+-..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 89999999999999999976 46888766543
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=5e-05 Score=59.46 Aligned_cols=70 Identities=6% Similarity=-0.138 Sum_probs=60.1
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT----------KIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.+.+.+++|++.+++... +.+...|..+..++...|++ ++|+..|+++++++|+++.++..+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 355678999999988765 45688888888888887764 699999999999999999999999999998
Q ss_pred cc
Q 010031 512 KG 513 (520)
Q Consensus 512 ~g 513 (520)
.|
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.00013 Score=52.85 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=23.3
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
+...|++++|.+.++++.+.. +.+.. .+..+..+|.+.|++++|++.|++.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555444321 12233 4444455555555555555555443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.0011 Score=62.36 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHHccCcHHHHHHHHHHcHhhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCC-HHH
Q 010031 404 LTACWYSGQVKLALNFFDSMRFDY--FIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPD-FVI 467 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 467 (520)
+..+...|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887765321 12222 35678888888888888888888877543 233 236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCcchhHH
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCS-----LNLSIPQAMSY 504 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 504 (520)
++.+...|...|++++|+.+++++++ +.|++|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888889999999999999999976 46888766554
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.22 E-value=0.0052 Score=45.60 Aligned_cols=102 Identities=11% Similarity=-0.105 Sum_probs=75.0
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH---HHHHHhhCCCC--C--CHHHHHHHHHHHHHcCC
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK---ALNFINKMPET--P--DFVIWGALFCACRTHKD 480 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~ 480 (520)
.....+..+.+.|...... + .++..+-..+.+++.+..+... ++.+++.+... | .......+.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3444555666666665532 3 3777777788899998887666 88888886653 3 22345556677999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+++|.+.++.+++..|+|.++......+-.+
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998776655443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.061 Score=55.60 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred HHHHhcCChhHHHH-HhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010031 172 DMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (520)
Q Consensus 172 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 250 (520)
......++++.|.+ ++..+. +......++..+.+.|..+.|+.+.+. . ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHH
Confidence 34456788888887 664433 122336677778888888888876642 1 11133456778899998
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC
Q 010031 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (520)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (520)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+....+.+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 8887764 346788888889999999999888887643 22334444446666665555544444331
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
++....+|.+.|++++|.+++
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHH
T ss_pred ---hHHHHHHHHHcCCHHHHHHHH
Confidence 233344455566666666553
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.98 E-value=8.8e-06 Score=74.61 Aligned_cols=261 Identities=10% Similarity=0.092 Sum_probs=175.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 172 (520)
.+..|..|.++....+...+|++.|-+. -|+..|..++.+..+.|.+++-.+.+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4456888999999999888888776332 356678889999999999999888887666543 45556678899
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999998766433332 46666677788888999999988888876653 33444455666776666543
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
-++. .++.||..+-.+|...+.+.-|.-.--.++- .|+ -...++..|...|.+++.+.+++.-... ......
T Consensus 193 ArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 193 ARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 2221 3467888888888888887766544333332 222 2234555677888888888777766532 235667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----C-------ChhHHHHHHHHHHHcCCHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----K-------DLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+|+-|.-.|++- ++++..+-++.... | ....|.-++-.|.+-.+++.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777777777654 45555555543332 2 3456777777777777777664
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.73 E-value=0.00079 Score=62.08 Aligned_cols=209 Identities=10% Similarity=0.069 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
.+.+|..+..+....+.+.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+...++..-.|... +.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHh
Confidence 4567778888888888888887766433 566778889999999999999998887766643334333 568888999
Q ss_pred cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC--------------------CCCCchh
Q 010031 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------------KSESVLL 201 (520)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~ 201 (520)
.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+..-. -..++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888877555443 3666666677777888888888777776654211 1347889
Q ss_pred HHHHHHHHHhcCChhHHHHH----HhhCCC-----------------------------CCHHHHHHHHHHHHhcCCHHH
Q 010031 202 WNVLINGCSKIGYLRKAVEL----FGMMPK-----------------------------KNVASWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 202 ~~~l~~~~~~~g~~~~a~~~----~~~~~~-----------------------------~~~~~~~~l~~~~~~~~~~~~ 248 (520)
|-.+..+|...+.+.-|.-. .-...+ .....|+.|.-.|++- ++++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 99999999988876654322 211110 2334566776666664 4444
Q ss_pred HHHHHhcCCC----C-------CcccHHHHHHHHHhCCChhHHHH
Q 010031 249 AGELFEQMPE----K-------GVVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 249 a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
..+.++-.-. | ....|.-++-.|++-.+++.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444443322 1 13468888888888888776653
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.13 Score=40.87 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|++... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456678888888887665 4567888888888888888888888887643 2334444556777776665
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
+-+.... .| -++.-..++.-.|+++++++++.+...-|. -+......|-.+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 5554442 11 234555666778999999999888765221 112233477778888887766
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.11 Score=53.81 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=73.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 379 (520)
..++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4455555566666666554421 1 011233455677888877776653 4567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.|++.|.++.. |..+...+...|+.+...++.+.... .| -++.-..+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888877643 22333334445555555544444432 11 1233344455566666666666665
Q ss_pred CC
Q 010031 460 PE 461 (520)
Q Consensus 460 ~~ 461 (520)
..
T Consensus 763 ~~ 764 (814)
T 3mkq_A 763 QR 764 (814)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.53 E-value=0.043 Score=49.55 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
.+..+|..+...+...|++++|...++++... .|+...|..+...+...|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 35556666666666667778888777777774 36666666666677777788887777777764 35665554
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.0065 Score=57.08 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhHHHHHHH
Q 010031 375 HGRYEQAIQYFKKMMYS---GTEPD---G-TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKHHTVVVN 441 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~---~~~p~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~l~~ 441 (520)
.|++++|+.++++..+. -+.|+ . .+++.|..+|...|++++|..++++..+- .| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888888877652 22333 2 37888899999999999999998887531 22 1233 357899999
Q ss_pred HHhccCChHHHHHHHhhCCC
Q 010031 442 LLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~ 461 (520)
+|...|++++|+.+++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988653
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.43 E-value=0.0049 Score=43.61 Aligned_cols=55 Identities=11% Similarity=-0.126 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 TPDFVIWGALFCACRTHKD---TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++++..+..+..++...++ .++|..+++++++++|+++.+...+|..+.+.|+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~ 60 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQ 60 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHH
Confidence 4577888888888765554 799999999999999999999999999999999854
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.32 E-value=0.014 Score=55.00 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhH
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSG---TEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKH 435 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~ 435 (520)
+..+...|++++|+.++++..+.. +.|+. .+++.+..+|...|++++|+.+++++.+- .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788999999998887531 22332 37888888999999999999998877532 11 1233 357
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
++.|...|...|++++|+.+++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988653
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.08 E-value=1.2 Score=43.71 Aligned_cols=114 Identities=9% Similarity=-0.077 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
.+.+.|...+....+.+ ..+.. ....+.......+...++...+..... . .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHH
Confidence 48899999999887543 22333 233333344445535566666666542 2 3444334444555567899999
Q ss_pred HHHHHhhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 452 ALNFINKMPETP-D-FVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 452 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
|...|+.|...+ + ..-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998642 2 33333455677889999999999999975
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.78 E-value=0.077 Score=40.96 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 452 (520)
...+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+.. .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4456666666666554 67777778888888887 7779999999887532 24 345666778888999999999
Q ss_pred HHHHhhCCC-CCCHH
Q 010031 453 LNFINKMPE-TPDFV 466 (520)
Q Consensus 453 ~~~~~~~~~-~~~~~ 466 (520)
.+.++.+.+ +|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 999998775 56543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.29 Score=38.86 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=20.6
Q ss_pred HhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256 (520)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 256 (520)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444433 23444444444444444444444444443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.60 E-value=0.073 Score=39.64 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHhccCCh---HHHHHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVGQV---DKALNFINKMPE-TP--DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.|+..+--.+.+++.+..+. .+++.+++.+.. .| ....+..+.-++.+.|++++|.+..+.+++..|+|.++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 56777767778888877654 457777776543 34 2446667777899999999999999999999999999887
Q ss_pred HHHhhhhh
Q 010031 504 YCQTFMQQ 511 (520)
Q Consensus 504 ~l~~~~~~ 511 (520)
....+-.+
T Consensus 117 Lk~~Ie~k 124 (134)
T 3o48_A 117 LKSMVEDK 124 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.53 E-value=0.1 Score=39.70 Aligned_cols=114 Identities=12% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCcchHHHHHHHHHhCCCh------hHHHHHHHHhhhCCCCCCcc----cHHHHHHH---HhccCChhhHHHHHHHHH
Q 010031 90 TPKNLHIFNVLIRGLAENSHF------QSCISHFVFMLRLSVRPNRL----TYPFVSKS---VASLSLLSLGRGLHCLIV 156 (520)
Q Consensus 90 ~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~----~~~~ll~~---~~~~~~~~~a~~~~~~~~ 156 (520)
.+.|..+|-..+...-+.|++ ++.+++|++... .++|+.. .|..+.-- +...++.++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345777888888888878888 888889988876 4666542 22222221 123478999999999998
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH
Q 010031 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206 (520)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 206 (520)
+.+-.. ..+|......-.++|+++.|++++......+.. +.......+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 764333 677888888888999999999999888776533 344444333
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.45 E-value=0.021 Score=49.36 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhcc-C
Q 010031 379 EQAIQYFKKMMYSGTEPD---GTVFLAILTACWYS-----GQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRV-G 447 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g 447 (520)
..|...+++.++ +.|+ ...|..+...|... |+.++|.+.|++..+ +.|+ ..++....+.+++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 344444444444 3444 22444444444442 455555555555443 1231 33334444444442 4
Q ss_pred ChHHHHHHHhhC
Q 010031 448 QVDKALNFINKM 459 (520)
Q Consensus 448 ~~~~A~~~~~~~ 459 (520)
+.+++.+.+++.
T Consensus 255 d~~~a~~~L~kA 266 (301)
T 3u64_A 255 NRAGFDEALDRA 266 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555554443
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.42 E-value=0.16 Score=38.36 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHHHhccCChH---HHHHHHhhCCC-CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVGQVD---KALNFINKMPE-TP-D-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.|+..+--.+.+++.+..+.+ +++.+++.+.. .| + ......+.-++.+.|++++|.++.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566666667778888776544 56667766543 34 2 334555667799999999999999999999999999887
Q ss_pred HHHhhhhh
Q 010031 504 YCQTFMQQ 511 (520)
Q Consensus 504 ~l~~~~~~ 511 (520)
....+-.+
T Consensus 116 Lk~~Ie~~ 123 (144)
T 1y8m_A 116 LKSMVEDK 123 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.09 E-value=0.12 Score=37.26 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C-CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----T-EPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.+..++..+...|++..|...|+...+.- . .+....+..+..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34556666777777777777777765521 1 12234666666777777777777777777664
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.71 Score=43.52 Aligned_cols=158 Identities=8% Similarity=0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCChhHHHHHHhhCCC-----C----CHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ccc
Q 010031 203 NVLINGCSKIGYLRKAVELFGMMPK-----K----NVASWVSLIDGFMRKGDLKKAGELFEQMPE-----KG-----VVS 263 (520)
Q Consensus 203 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~ 263 (520)
..|...+...|++.+|..++..+.. - -...+...++.|...+++..|..++.++.. +. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888777642 1 123566667778888888888877776531 11 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHH----HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVV----SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
+...+..+...+++.+|.+.|.+.... ....+...+. .++.+..-.+..+.-..++.........++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566667777788888888887776542 1111222221 11111111111122222333333222235667788888
Q ss_pred HHHHhc--CCHHHHHHHHhcCCCC
Q 010031 339 DMYAKC--GNIEAASLVFGETKEK 360 (520)
Q Consensus 339 ~~~~~~--~~~~~a~~~~~~~~~~ 360 (520)
.+|... .+++.+.+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 888764 4678888888776654
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.36 E-value=0.15 Score=38.87 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=59.4
Q ss_pred HHHHHHHHHHccCcH------HHHHHHHHHcHhhcCCCCChh-HHHHHHH------HHhccCChHHHHHHHhhCCC---C
Q 010031 399 VFLAILTACWYSGQV------KLALNFFDSMRFDYFIEPSVK-HHTVVVN------LLSRVGQVDKALNFINKMPE---T 462 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~---~ 462 (520)
+|...+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.+.. +
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 455555444444555 5555666655532 344321 1111111 11234677777777776642 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
. ...|.....--.++|+..+|.+++.+++.+.|.....+.
T Consensus 93 F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 93 F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 3 556666666677899999999999999998887554443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.28 E-value=1.2 Score=33.24 Aligned_cols=137 Identities=10% Similarity=0.013 Sum_probs=79.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI---GTALVDMYAKCGNI 347 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 347 (520)
+.-.|..++..++..+...+. +..-++.+|--....-+-+-..++++.+-+. .|... ...++.+|.+.+
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n-- 88 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINN-- 88 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTT--
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhc--
Confidence 345667777777777766532 3444555554444445555555555544321 22211 123344444333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
.+.......+..+...|.-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.++-+ .
T Consensus 89 ------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-k 154 (172)
T 1wy6_A 89 ------------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-K 154 (172)
T ss_dssp ------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T
T ss_pred ------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-h
Confidence 2333445566777778888888888777533 2467777777788888888888888888877763 4
Q ss_pred CC
Q 010031 428 FI 429 (520)
Q Consensus 428 ~~ 429 (520)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.02 E-value=6.3 Score=40.54 Aligned_cols=250 Identities=13% Similarity=0.025 Sum_probs=120.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---C---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-------CCCHHHHHHHH-
Q 010031 238 DGFMRKGDLKKAGELFEQMPEK---G---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-------RANDFTVVSAL- 303 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~l~- 303 (520)
-+....|+.++++.+++..... + +..-..+.-+....|..+++..++...+...- .+....-..+.
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466778888888888887652 1 12223344455666666677777777654321 01111122222
Q ss_pred -HHhhccCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHH--HHHHHHcCC
Q 010031 304 -SACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAM--IWGLAIHGR 377 (520)
Q Consensus 304 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l--~~~~~~~~~ 377 (520)
-++.-.++ +.+...+..+....- ... ...-++...+...|+-+....++..+.+ .+......+ .-++...|+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 22333333 344555555443321 111 1122344445566777766666665433 222222223 333445677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
.+.+..+.+.+... ..|.... ...+.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 77777777777652 1222221 122334566777777666677777642 122222222333344445555556666
Q ss_pred HhhCCCCCCHHHHHH--HHHHHHHcCCH-HHHHHHHHHHh
Q 010031 456 INKMPETPDFVIWGA--LFCACRTHKDT-KIAKIALQSSC 492 (520)
Q Consensus 456 ~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~ 492 (520)
++.+....|+.+-.. +.-+....|+. .+++..++++.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 655443333333222 22222223322 45566666654
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.53 E-value=0.41 Score=37.28 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.5
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
-.+..+|.+.|++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455556666666666666665554
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.17 E-value=0.32 Score=42.10 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhhhCCCCCC---cccHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CCh
Q 010031 110 FQSCISHFVFMLRLSVRPN---RLTYPFVSKSVAS-----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKT 180 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 180 (520)
...|..++++..+ +.|+ ...|..+...|.. -|+.+.|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3567777777777 4566 4467777777877 489999999999999976433577888888888884 899
Q ss_pred hHHHHHhccCCCCCCC--CCchhHH
Q 010031 181 RGAFKVFDETPEKNKS--ESVLLWN 203 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~--~~~~~~~ 203 (520)
+.+.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999988876544 4444443
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.01 E-value=0.26 Score=36.54 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH---HHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL---ALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 450 (520)
.....+.+-|.+....|. |+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344556666666655544 777777778888888776555 88888887742 1 23 2344556778889999999
Q ss_pred HHHHHHhhCCC-CCCH
Q 010031 451 KALNFINKMPE-TPDF 465 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~ 465 (520)
+|.+.++.+.. +|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 99999998765 5543
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.76 E-value=0.46 Score=37.05 Aligned_cols=134 Identities=7% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh-HH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDG-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK-HH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 436 (520)
-.=+..+...|.++.|+-+...+... +..|+. .++..+..++...|++.+|...|++..+....-+... ..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33456667778888887777665442 122331 2556667777788888888888887654322222111 11
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
..+. ....... -+. ...+...-.-+..++.+.|++++|+.+++.+ -..-..|..-..||..|.
T Consensus 104 ~~~~----~~ss~p~---s~~---~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 104 PSTG----NSASTPQ---SQC---LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp --------------------C---CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred cccc----ccCCCcc---ccc---ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 1110 0000000 000 1123444445777899999999999998765 223346677777887764
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.62 E-value=2.4 Score=31.66 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKM-PE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+....+.-+..+...|+.++-.+++..+ .. +|++.....+..+|.+.|+..+|.+++.++.+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566777888889999988998884 43 578999999999999999999999999999764
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=6.9 Score=36.75 Aligned_cols=97 Identities=7% Similarity=0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcHhh-cCCCCC----h
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDG---TVFLAILTACWYSGQVKLALNFFDSMRFD-YFIEPS----V 433 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~ 433 (520)
....|...+...|++.+|..++..+... |..+.. ..+..-++.|...+++.+|..++.++... ....++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788889999999999999998642 222221 26667778899999999999999987421 112222 2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..+...+..+...+++.+|-+.|.++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677888888899999988777654
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.38 E-value=11 Score=38.76 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 166 VRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 166 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
-|..++.+..+.++.+.+.++|+.+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666667777777777777765
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.23 E-value=5.7 Score=36.42 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=45.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCHHHHHH--
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDFVIWGA-- 470 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~-- 470 (520)
.++..|...|++.+|.+++.++.+...-..+ ..++..-+..|...|++.++...+.+... .+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4555566666666666666666543211111 12344445556666666666666554321 122222111
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHHhc
Q 010031 471 --LFCACR-THKDTKIAKIALQSSCS 493 (520)
Q Consensus 471 --l~~~~~-~~g~~~~A~~~~~~~~~ 493 (520)
-+..+. ..++++.|...|-++++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 112244 56666666666666653
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.11 E-value=12 Score=36.67 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=73.4
Q ss_pred CCHHHHHHHHhcCCC---CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
.+.+.|...+....+ -+.. .+..++..+...+...++...+...... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 378999998876542 1222 2333333344455355667777776553 345554555556566789999999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (520)
..|+.|.... .....-.--+..++.+.|+.++|..+|+.+...
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 9999986421 122333344667888899999999999998753
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.94 E-value=8.2 Score=34.27 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHH----HHhhhCCCCCCcccHHHHHHHH
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF----VFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
-.|.++..-|.+.+++++|++++-. -...+.+.|+...|.++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778889999999887643 234455667766665554 4445567888877777777776
Q ss_pred hccCChh-hHHHHHHHH----HHhC--CCCChhHHHHHHHHHHhcCChhHHHHHh
Q 010031 140 ASLSLLS-LGRGLHCLI----VKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (520)
Q Consensus 140 ~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 187 (520)
.....-+ .-..+.+.+ .+.| ..-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6544311 112222222 2333 2345666666777777777777776666
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.83 E-value=8.1 Score=34.02 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHH----HHHhhhCCCCCCcccHHHHHHHH
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH----FVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
-.|.++..-|.+++++++|++++.. -...+.+.|+...|-++ .+...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556777778888889998887654 23445566776666554 44455567778777777777766
Q ss_pred hccCChh-hHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 140 ASLSLLS-LGRGLHCLIV----KSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 140 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
.....-+ .-.++.+.++ +.| ...|+..+..+...|.+.|++.+|+..|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5533211 1223333333 222 12355666666666666666666666553
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.78 E-value=1 Score=38.28 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=82.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh----HHHHHHHHHh
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK----HHTVVVNLLS 444 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 444 (520)
....+.|+++++++....-++. .| |...-..|+..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 3456789999999998888875 44 555777788899999999999999998875 356543 34444432
Q ss_pred ccCChHHHH-HHHhhCCC----CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 445 RVGQVDKAL-NFINKMPE----TPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 445 ~~g~~~~A~-~~~~~~~~----~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
+... ++|.--.. .....-...++.+ ....|+.++|..+-+++++..|..+....
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2222 23322111 1122233344455 45689999999999999999888776555
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.96 E-value=3.6 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
..+...|++++|..+.+....||...|.+|- -.+.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455667777777777777767766665553 345666666666666666655 4444443
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.71 E-value=2.5 Score=29.55 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.-+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4445666777777778889999999999999999999999999999876543 33456766654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.67 E-value=5.7 Score=42.68 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=126.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------------
Q 010031 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--------------------- 360 (520)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 360 (520)
++..+...+..+.+.++... .+.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555544322 1234444445677889999999999999876431
Q ss_pred -----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC
Q 010031 361 -----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--T--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 361 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 431 (520)
-..-|..++..|.+.+.++.+.++-+..++..-.-+. . .|..+.+++...|++++|...+-.+.. .. .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~--~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP--L 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--H
Confidence 0123667788888999999999988887764222122 2 578888999999999999998877752 22 2
Q ss_pred ChhHHHHHHHHHhccCChHH------------HHHHHhh-CCC----CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhc
Q 010031 432 SVKHHTVVVNLLSRVGQVDK------------ALNFINK-MPE----TPDFVIWGALFCACRTHKDTKI-AKIALQSSCS 493 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-~~~----~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 493 (520)
-......|+..++..|..+. ..+++.. +.. ...+..|..|..-+..+||+.+ |.-+|+++.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 23456667777776665443 3333322 110 1112234444444566777754 5666777755
Q ss_pred CCC-----C------CcchhHHHHhhhhhccCCCccc
Q 010031 494 LNL-----S------IPQAMSYCQTFMQQKGDGRTWR 519 (520)
Q Consensus 494 ~~p-----~------~~~~~~~l~~~~~~~g~~~~~~ 519 (520)
+.. . ...+|....+++.-....+.|+
T Consensus 1050 L~~~~~~~~~~~~~~q~~~yL~~INaLslvd~~~aWI 1086 (1139)
T 4fhn_B 1050 YISTTELIGKKERTFIIEHYLIVLNTLELLPKEDTWI 1086 (1139)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHSCSSCCCC
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHhcCChhhCEE
Confidence 421 1 1245566666666665555663
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.63 E-value=3.8 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010031 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 291 (520)
+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555555555555555544432 23444444444444444443
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.02 E-value=1.8 Score=43.44 Aligned_cols=49 Identities=14% Similarity=-0.053 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+..-|..|+....+.+++++|.+.|+..+... -++.++..|..+|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34457777777788888888888888888653 67777777887777655
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.32 E-value=13 Score=32.77 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=112.4
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH--
Q 010031 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM-- 283 (520)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 283 (520)
++.....|++=+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+..-|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 44456677777777754 4777788888999999988644 23456677887666554
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHhhccCChH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 284 --FFQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 284 --~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
++-..+.+.+++......++..+......+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|..-|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 455556688889888888887775533211 2233444433 232 2346778888899999999999998876
Q ss_pred hcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 355 GETKEKDLLTWTAMIWGLAIH---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
-.....+...+..++.-+... |...++--+ ....+--|.-.|+...|..+++...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 533322344444444433333 333322111 11122234567888888888887653
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.01 E-value=1.7 Score=43.66 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45567777777777776642 13345677777777777777777777777766
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.83 E-value=4.4 Score=37.26 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 436 (520)
..++..+...|+++++...+..+... .| +...+..++.++.+.|+..+|++.|+...+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34566677888888888888888763 44 566888888888888998888888887643 46888887653
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.20 E-value=11 Score=30.78 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 010031 228 KNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~ 245 (520)
++...-...+..+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344333334444444443
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.35 E-value=12 Score=30.48 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 010031 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 200 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (520)
..-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3333344444444443333333333333444444444444444443
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.01 E-value=21 Score=32.74 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666777777777777666654
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.93 E-value=5.6 Score=42.73 Aligned_cols=169 Identities=8% Similarity=0.075 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 67 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
..++..+...+..+.|.++....+. +...--.+..++...|++++|.++|++... |+..+......+ .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~----------~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL----------R 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------H
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------c
Confidence 3455666667777777776655443 443334456678888999999999877542 332222111000 0
Q ss_pred hHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCC--CCC--chhHHHHHHHHHhcCChhHHHH
Q 010031 147 LGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK--SES--VLLWNVLINGCSKIGYLRKAVE 220 (520)
Q Consensus 147 ~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~ 220 (520)
-+..+..... ..-..-|..++..+-+.+.++.+.++-....+... .++ ...|..+.+.+...|++++|..
T Consensus 884 ----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 ----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0111111110 11223566777777777777776665443322110 111 1257778888888888888887
Q ss_pred HHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 010031 221 LFGMMPK--KNVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 221 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+-.+.. .-......|+...+..|..+.-..
T Consensus 960 aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 960 ALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhC
Confidence 7765543 234566777777777777666543
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.98 E-value=4.8 Score=28.21 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
=++.+-+..+....+.|++......+.+|.+.+++..|.++++-+..+- .....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666667788999999999999999999999999998876542 233556766654
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.24 E-value=6.6 Score=29.23 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
|.-+..+-++.+....+-|++......+++|.+.+|+..|.++++-++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344556666777777788999999999999999999999999999988654 344556776654
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.87 E-value=8.8 Score=35.26 Aligned_cols=70 Identities=9% Similarity=-0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----cCCCCChhHHH
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC-----NDFGLKGAIGT 335 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 335 (520)
..++..+...|++.+|...+..+.... +.+...+..+|.++...|+..+|.+.|+...+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345566667777777777777766553 44666777777777777777777777776532 47777665543
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.69 E-value=17 Score=29.24 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
+..+-...+..+.+.++.+..-.+.+.+..++...-...+.++...++. .+...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333333334444333323233333333334444444444555554443 23333333332 1444444445555555
Q ss_pred cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC
Q 010031 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (520)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 214 (520)
.++.+....+ ..+.. .++..+-...+.++.+.++.+....+. .+.. .++...-...+.++.+.|.
T Consensus 103 ~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 103 IGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLI-KALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred hCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5543322222 22221 345555555555555555533222222 2222 1234444444455555444
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.84 E-value=8 Score=28.81 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 392 GTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
+-.|+..+--.+..++.++. +..+++.+++.+.+. .| ....+-.|.-++.+.|++++|.+..+.+.. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34566666666666776655 455678888887743 24 234555677788888888888888888665 4554
Q ss_pred H
Q 010031 466 V 466 (520)
Q Consensus 466 ~ 466 (520)
.
T Consensus 112 ~ 112 (134)
T 3o48_A 112 K 112 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.16 E-value=5.2 Score=37.39 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHH--
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY---SGTEPDGTVF-- 400 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~-- 400 (520)
.+...+.+.|.+.|+++.|.+.+.++.. .-+..+-..++.+...+++..+...+.++.. .+-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556788888888888888888877654 2334677777888888888888888887654 2333333221
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
..-...+...+++..|-..|-+....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 111223345778888888888887544
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.58 E-value=16 Score=27.65 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 394 EPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
.|+..+-..+..++.++. +..+++.+++.+.+. .| .....-.|.-++.+.|++++|.+..+.+.+ +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 566666666677777665 455677788887653 23 233445677788888888888888887654 4543
No 270
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=79.97 E-value=8.8 Score=30.65 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=43.2
Q ss_pred hHHHHHHHhhCCCCCCHH--H-----HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 449 VDKALNFINKMPETPDFV--I-----WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~--~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.|+.+|+.+...-+.. . -...+..|.+.|.+++|.+++++.++.+|++...-..|..+..++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 567888888887643321 1 1233455899999999999999999988888888777777776654
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.29 E-value=23 Score=28.48 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 010031 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (520)
Q Consensus 226 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (520)
..++...-...+..+...+..+....+.+.+..++
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~ 58 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDED 58 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCC
Confidence 33444444444444444444333333333333333
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.08 E-value=34 Score=30.35 Aligned_cols=183 Identities=10% Similarity=0.035 Sum_probs=111.0
Q ss_pred HHHHHhcCCh---hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHH
Q 010031 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 206 ~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
++..+..|++ =+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+..-+-+
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHH
Confidence 3445667887 6666654 4667778889999999887643 2345666777666555
Q ss_pred H----HHHHHHcCCCCCHHHHHHHHHHhhccCChH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 283 M----FFQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 283 ~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
+ ++-..+.+++++......++..+.....-+ .-..+++.+. +.| ..-++.....+...|.+.+++.+|.
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 4 355566788899888888888776655321 1233333332 223 3456777788889999999999998
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.-|--...+....+..++.-+...+...+ ++... ...+--|...+++..|..+++...+
T Consensus 157 ~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 157 KHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88743232333455444444433332211 11112 2222235567788888887766553
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.21 E-value=15 Score=25.65 Aligned_cols=78 Identities=12% Similarity=-0.133 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
..++|..|-+.+...+. ...+.-.-+..+...|++++|..+.+....||...|-.+.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45777777777777764 22222222344667899999999988888888888877655 456776777666666666
Q ss_pred CC
Q 010031 123 LS 124 (520)
Q Consensus 123 ~~ 124 (520)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.12 E-value=4.1 Score=34.69 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...+.|+++.+++....-.+.. +-|...-..|+..++-.|++++|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456677777777666655432 3445555567777777777777766666544
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.39 E-value=25 Score=26.24 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-+..+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666666788999999999999999999999999998876542 334556766654
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.62 E-value=15 Score=34.82 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCCC----CCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPET----PDF--VIWG-ALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
..++|.+++.|...+.++.|..++.+...+ ++. ..|. .++..+.-.+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 356778888888888888888888886542 111 2222 2334567788998999999988888776543
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.40 E-value=35 Score=31.71 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISC 324 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (520)
.++..+...|.+.|++++|.+.|.++...-. ..-...+..+++.+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3667788888899999999999988876532 22345666777788888888888888877643
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.93 E-value=24 Score=24.67 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
..++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|..|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554432 22222222345677888888888888888888888877644 456777777777777766
Q ss_pred CCCCCCHHHH
Q 010031 391 SGTEPDGTVF 400 (520)
Q Consensus 391 ~~~~p~~~~~ 400 (520)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3443344
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.24 E-value=53 Score=26.53 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 431 (520)
...++..+|..|..+|+--... .|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 3556677777777666554433 556666666667777777777776663 33344
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.95 E-value=48 Score=26.79 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (520)
.++...+.++|..|...|+--... -|..-...+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344668888888888877644433 3455555666778888888888888877666643
No 281
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=62.71 E-value=72 Score=27.17 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
++..+-...+.++.+.|+..-.-.+.+.+. .++ .-...+.++.+.|+ ..+...+.++++..+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCC
Confidence 344444444555555554322222222222 233 22233444555555 345555555555443
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.93 E-value=28 Score=26.72 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCC
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRA 294 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 294 (520)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4455666666666666666666654421 223333344444322 344556666666655443
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.89 E-value=65 Score=26.35 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHHhcCCChHHHHHHhccc
Q 010031 70 ISSASLHKSIDYALSIFDHF 89 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~ 89 (520)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444555665555555543
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.81 E-value=1e+02 Score=25.90 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=10.7
Q ss_pred HHHHHhcCCChHHHHHHhccc
Q 010031 69 LISSASLHKSIDYALSIFDHF 89 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~ 89 (520)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 333444555655555555543
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.29 E-value=59 Score=24.05 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAIHGR--YEQAIQYFKKMMYSGTEPDG 397 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~ 397 (520)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777778888888888888776532 233444445544332 35566777777776655433
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.77 E-value=1.1e+02 Score=25.10 Aligned_cols=22 Identities=0% Similarity=-0.099 Sum_probs=10.5
Q ss_pred HHhCCChhHHHHHHHHhhhCCC
Q 010031 104 LAENSHFQSCISHFVFMLRLSV 125 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~ 125 (520)
.++.|+.+....+++.+.+.|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3445555555555554444443
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.20 E-value=77 Score=23.39 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCC
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 295 (520)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4556666666777777777777655431 223334444444432 3456666666666664443
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.70 E-value=1.6e+02 Score=26.96 Aligned_cols=51 Identities=4% Similarity=-0.019 Sum_probs=22.6
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChH--HHHHHHHHHhcCCChHHHHHHhcc
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDH 88 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 88 (520)
.+......|+++-+..++ +.|..++.. ...+.+...+..|+.+-+.-+++.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 334444456655444443 334333211 111233344455666666555554
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.60 E-value=1.1e+02 Score=24.97 Aligned_cols=55 Identities=2% Similarity=-0.090 Sum_probs=27.5
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChH--HHHHHHHHHhcCCChHHHHHHhcc
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDH 88 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 88 (520)
.+......|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3444455677777666666655555433221 111233334445666555555543
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.60 E-value=63 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhcc
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 189 (520)
++......+..+.+.|+.++|..+|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455666666666666666533
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.58 E-value=92 Score=23.82 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC
Q 010031 111 QSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (520)
+.+.++|..|...|+--... -|..-...+...|++.+|.++++.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34677777777766543333 344444455566777777777777766655553
No 292
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.32 E-value=1.3e+02 Score=25.47 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=7.0
Q ss_pred CChhHHHHHHHHHHhcCC
Q 010031 162 YDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~ 179 (520)
++..+-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.74 E-value=87 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=14.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566667777777776666543
No 294
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.23 E-value=26 Score=28.44 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=19.1
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.|.+.|.+++|.+++++.++.+|.+...-..|..+..+
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 35555555555555555555444444344444444433
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.14 E-value=1.3e+02 Score=27.62 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc--cHHHHHHHHhccC
Q 010031 69 LISSASLHKSIDYALSIFDHFTPKNL---HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLS 143 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~ 143 (520)
.+...+..|+.+-+..+++.-..++. ... +.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 34445566777777777765433322 122 2333344556654433333 334333221 1112333344555
Q ss_pred ChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHH
Q 010031 144 LLSLGRGLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221 (520)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 221 (520)
+.+ +.+.+.+.|..++... -...+...+..|+.+-+..+++.-.... ..+..-++ .+...+..|+.+-+..+
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t-~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFT-PLHVAAKYGKVRVAELL 165 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 544 4445555564443221 1122334456677776666665433221 11111111 23334556666666555
Q ss_pred HhhC
Q 010031 222 FGMM 225 (520)
Q Consensus 222 ~~~~ 225 (520)
++.-
T Consensus 166 l~~g 169 (437)
T 1n11_A 166 LERD 169 (437)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 5543
No 296
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=46.14 E-value=30 Score=32.87 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
|++...-.+.++.|...+.++.. +.+...|+.|.-.....|+.-.|.-.|-+.+......+.+...+...+.+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 33433344456667777766543 233456676666666677777777777777665544666666666666543
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.82 E-value=75 Score=25.86 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHhccCChHHHHHHHhh
Q 010031 442 LLSRVGQVDKALNFINK 458 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~ 458 (520)
.|.+.|.+++|.+++++
T Consensus 123 VCiek~~f~kA~eiLkr 139 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHH
Confidence 34445555555555554
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.65 E-value=1e+02 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC
Q 010031 380 QAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 432 (520)
++..+|..|..+|+--... .|......+...|++.+|.++|+.-.+ .+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 3677777777777655444 666666667777888888888777764 334443
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.63 E-value=1.5e+02 Score=25.84 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 98 NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 98 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
..++.-|...|+.++|...++++......|.......-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CChh-------------HHHHHhccCCCCCCCCCchh-------HHHHHHHHHhcCChhHHHHHHhhCCCCCHH------
Q 010031 178 GKTR-------------GAFKVFDETPEKNKSESVLL-------WNVLINGCSKIGYLRKAVELFGMMPKKNVA------ 231 (520)
Q Consensus 178 g~~~-------------~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------ 231 (520)
.+.. -|..+.+.......-.+... -..+-.+-...........+-+....++..
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCCh--hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010031 232 --SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEA--EKALAMFFQMLDAGVRANDFTVVSALS 304 (520)
Q Consensus 232 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~ 304 (520)
-...++.-|...|+.++|.+.++++..|. ......+..++-+.++. +.+..++..+.+.|+-+.......+..
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HhhccC----ChHHHHHHHHHHHH
Q 010031 305 ACAKVG----ALEAGVRVHNYISC 324 (520)
Q Consensus 305 ~~~~~~----~~~~a~~~~~~~~~ 324 (520)
.+.... +...|..++..+..
T Consensus 246 vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 246 IYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHHHH
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.21 E-value=54 Score=25.14 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAIHGR--YEQAIQYFKKMMYSGTEPDG 397 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~ 397 (520)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777778888888888888776532 234444445544322 34566777777766655433
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.78 E-value=2.5e+02 Score=27.76 Aligned_cols=79 Identities=6% Similarity=0.077 Sum_probs=37.3
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh---CCChhHHHH
Q 010031 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ---NGEAEKALA 282 (520)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~ 282 (520)
...+.-.|++|.|+.++-+....+.+.+...+..| |-+.....++..-......-+..|+..|.+ ..++.+|.+
T Consensus 301 f~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~---gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~ 377 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASL---KLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVE 377 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHT---TC-----------------CHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHc---CCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHH
Confidence 44455678888888877766323334443333332 222211111111000012346667777764 467778888
Q ss_pred HHHHH
Q 010031 283 MFFQM 287 (520)
Q Consensus 283 ~~~~m 287 (520)
+|--+
T Consensus 378 Y~~li 382 (661)
T 2qx5_A 378 YLVLI 382 (661)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 77665
No 302
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.63 E-value=1.2e+02 Score=27.02 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhc
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGE 356 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (520)
.....++..+.+....+.+.++|.+
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3444455555556666666666654
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.55 E-value=1.5e+02 Score=25.21 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=7.0
Q ss_pred HHHHHHHcCCCCCHH
Q 010031 283 MFFQMLDAGVRANDF 297 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~ 297 (520)
+.+.+.+.|..++..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 334444555555443
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.01 E-value=79 Score=24.06 Aligned_cols=63 Identities=6% Similarity=-0.007 Sum_probs=43.4
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 010031 118 VFMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181 (520)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 181 (520)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456678777765443 556666665 67789999999988776666666666677777777654
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.94 E-value=72 Score=23.74 Aligned_cols=62 Identities=5% Similarity=-0.016 Sum_probs=39.9
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 010031 119 FMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181 (520)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 181 (520)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35566777666543 3555666555 67788888888888776566666555666676666543
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.68 E-value=1.9e+02 Score=30.16 Aligned_cols=131 Identities=6% Similarity=0.025 Sum_probs=76.1
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhH
Q 010031 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 148 (520)
++..+...|..+-|.++....+. ++..--.+..+|...|++++|.++|++.-. |+..+....... ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~----------~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL----------REF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGG----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccch----------hhh
Confidence 67778888999998887777665 443334567788999999999999988642 443322211100 001
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCC----chhHHHHHHHHHhcC
Q 010031 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES----VLLWNVLINGCSKIG 213 (520)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 213 (520)
..++... + .......-|..++..+-+.+-++.+.++-+...+.--..| ...|+.++++.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1111100 0 0011223678888888888888887766544332110112 236777777776654
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.43 E-value=73 Score=24.07 Aligned_cols=62 Identities=5% Similarity=-0.096 Sum_probs=38.2
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566776665543 34455555566677888888887766555655555556666666654
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.07 E-value=91 Score=23.72 Aligned_cols=63 Identities=3% Similarity=-0.103 Sum_probs=41.0
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 010031 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181 (520)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 181 (520)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345667776665543 355566666677888999999888776666666656677777776543
No 309
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.05 E-value=52 Score=32.67 Aligned_cols=63 Identities=11% Similarity=-0.062 Sum_probs=50.6
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+.|.++++.|- ...............|++.-|.++.+.++..+|+|..+...++.+|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356667777765 233344455556789999999999999999999999999999999999885
No 310
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.87 E-value=78 Score=26.70 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=11.4
Q ss_pred HHHHHHhcCChhHHHHHhcc
Q 010031 170 LADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~ 189 (520)
.+...++.|+.+....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445566666666666554
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.97 E-value=34 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=14.8
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCC
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPN 128 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~ 128 (520)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666665555554444
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.92 E-value=1.3e+02 Score=23.35 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=33.2
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC
Q 010031 381 AIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 432 (520)
+..+|..|..+|+--... .|......+...|++.+|.++|+.-.+ .+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcH
Confidence 556777777776655444 566666666677777777777777663 444554
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.14 E-value=1.6e+02 Score=24.21 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=36.9
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh
Q 010031 111 QSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (520)
+.+.++|..|...|+--... -|..-...+...|++.+|.++|..-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 56778888888877644433 3444555566778888888888888877766643
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.99 E-value=1.4e+02 Score=23.17 Aligned_cols=55 Identities=4% Similarity=-0.043 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh
Q 010031 111 QSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (520)
+.+.++|..|...|+--... -|..-...+...|++.+|.++|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44677888888777644433 34444455566788888888888887777666544
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.87 E-value=37 Score=23.60 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHH
Q 010031 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (520)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 113 (520)
.+++.+.+.|+- +..-...+-. .....+.+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 366667777653 2222222221 11125788899999999988889999999998776765544
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.83 E-value=37 Score=23.61 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=23.5
Q ss_pred CHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 010031 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (520)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (520)
..+.|.++++.+..++..+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 466677777777777777777777777665554433
No 317
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.50 E-value=1.8e+02 Score=24.74 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=6.6
Q ss_pred HhcCChhHHHHHHhh
Q 010031 210 SKIGYLRKAVELFGM 224 (520)
Q Consensus 210 ~~~g~~~~a~~~~~~ 224 (520)
+..|+.+-+..+++.
T Consensus 103 ~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344554444444433
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.82 E-value=1.4e+02 Score=23.11 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC---CC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHhc
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE---TP--DFVIWGALFC-A-----CRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 493 (520)
|..-+..+ ..|++-+|-++++..-. .+ +...|..|+. . ..+.|+...|..++.+++.
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 44999999999998654 24 4456777777 2 3468999999999999976
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.39 E-value=1.8e+02 Score=23.54 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=9.1
Q ss_pred HhcCCChHHHHHHhcc
Q 010031 73 ASLHKSIDYALSIFDH 88 (520)
Q Consensus 73 ~~~~~~~~~A~~~~~~ 88 (520)
.++.|+.+....+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 3455666666666554
No 320
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=34.99 E-value=1.8e+02 Score=23.41 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHH
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 151 (520)
.++++|..|.+.|. .+..-...+-..+...++.+-+..+
T Consensus 135 s~ldlf~~LEk~~~-l~~~nL~~L~~iL~~I~R~DL~~~i 173 (195)
T 2bbr_A 135 RFVELVLALENVGL-VSPSSVSVLADMLRTLRRLDLCQQL 173 (195)
T ss_dssp CHHHHHHHHHHTTS-CBTTBCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhhCC-CCchhHHHHHHHHHHcChHHHHHHH
Confidence 55666666655542 2222223344444444444444333
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.90 E-value=1.8e+02 Score=23.45 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=37.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-----HHHHHHHHHHcHhhcCC
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ-----VKLALNFFDSMRFDYFI 429 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 429 (520)
.+..+++.|+-.+-+|++.| .|....-..++.+....|. +..|...++... ..|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~-~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAE-KLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHH-HHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HhCC
Confidence 35689999999999999999 7766666666666666664 334445555544 3453
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.39 E-value=1e+02 Score=23.19 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=34.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556665554332 33334444455566777777776666555666655566666666543
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.34 E-value=50 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=28.5
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCChHH-------HHHHHHHH--hcCCChHHHHHHhcc
Q 010031 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRI-------TTQLISSA--SLHKSIDYALSIFDH 88 (520)
Q Consensus 36 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~--~~~~~~~~A~~~~~~ 88 (520)
-...+.|+.+....+++.+.+.|..++... .+.|..+. ++.|+.+-+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344456777777777777777665544222 12222221 145666666555553
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.17 E-value=76 Score=23.98 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=35.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34556776665432 2444444445 667888888887766555655555556666666654
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.12 E-value=1.3e+02 Score=26.67 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHc
Q 010031 340 MYAKCGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAILTACWY 409 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~ 409 (520)
..+..|+.+-+..+++.... .+..-++.|. ..+..|+.+ +.+.+.+.|..++... -.+-+...+.
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 34456677666666654222 1222222222 223445543 3444445555554321 1112233344
Q ss_pred cCcHHHHHHHHHH
Q 010031 410 SGQVKLALNFFDS 422 (520)
Q Consensus 410 ~g~~~~a~~~~~~ 422 (520)
.|+.+-+.-+++.
T Consensus 254 ~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 254 AAMVLLTKELLQK 266 (364)
T ss_dssp TCCHHHHHHHHHH
T ss_pred hChHHHHHHHHHc
Confidence 5666666666554
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.86 E-value=1.6e+02 Score=21.85 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 286 QMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 35567777665433 4445555555 667788888888877766677666666666666654
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.81 E-value=1.7e+02 Score=22.19 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=43.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 285 FQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346677877776443 4455555555 6778999999998887777777776777777777644
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.21 E-value=3.3e+02 Score=28.49 Aligned_cols=127 Identities=10% Similarity=-0.047 Sum_probs=69.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 010031 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (520)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (520)
++..+...|..+-|.++..-+.. +...-..+..+|...|++++|...|++.- .|+..+..... .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhh
Confidence 55666777888877776666654 33333457778888999999999887753 23322110000 00011
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCh----hHHHHHHHHHHHcC
Q 010031 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK----EKDL----LTWTAMIWGLAIHG 376 (520)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 376 (520)
..++.... ........|..++..+.+.+-++.+.++-+... ..|. ..|+.+.++.+..|
T Consensus 884 ~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111000 011122367778888888888887776655332 2233 35666776666544
No 329
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.64 E-value=3e+02 Score=24.71 Aligned_cols=239 Identities=9% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 010031 66 TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (520)
Q Consensus 66 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 145 (520)
...++.-|-..++.++|...++++..|.....-.-...-....+-+.-.+....+.. .+..+..+-..+.+++
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs-~L~~~~ls~~~i~~gf------ 129 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS-DLCGTVMSTNDVEKSF------ 129 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHH-TTTTTSCCHHHHHHHH------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhCCCCHHHHHHHH------
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHh--
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG-- 223 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-- 223 (520)
....+.++.+.-.- |+...+...+-+-+-..+.=.-..+.+.....+......+...--..+......+...++|.
T Consensus 130 ~~lle~ldDl~lDi--P~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g 207 (358)
T 3eiq_C 130 DKLLKDLPELALDT--PRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSG 207 (358)
T ss_dssp HHHHHTHHHHHHHC--TTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCC
T ss_pred HHHHHhhhhhcccc--ccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCC
Q ss_pred ---hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCC
Q 010031 224 ---MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 224 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~ 295 (520)
+-.+.=......++.-|...++.++|.+.++++..+. ......+..++-+.+ ..+.+.+++..+...|+-+.
T Consensus 208 ~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 208 GGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Q ss_pred HHHHHHHHHHhhccCChH
Q 010031 296 DFTVVSALSACAKVGALE 313 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~ 313 (520)
......+...+....+..
T Consensus 288 ~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 288 DQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhh
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.62 E-value=2.1e+02 Score=22.98 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-----HHHHHHHHHHcH
Q 010031 368 MIWGL---AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ-----VKLALNFFDSMR 424 (520)
Q Consensus 368 l~~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~ 424 (520)
+|+++ .+..+++.|+-.+-+|++.|-.|....-..++.+....|. +..|...++...
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~ 74 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFT 74 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 34444 3568999999999999999988876666666666655553 334444454444
No 331
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.05 E-value=3.5e+02 Score=25.71 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-cc-------HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-VS-------WTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-------~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
..++.+++.|...+.+++|..+..+..-|.. .+ +.-++..+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3466677777777777777777776654421 11 112344555666777777666665543
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.15 E-value=1.2e+02 Score=19.79 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=39.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 286 QMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....++.+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566777776544 34555555554 566777888888777666677777677777766653
No 333
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.07 E-value=2.3e+02 Score=23.00 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-----HHHHHHHHHHcHhhcCC
Q 010031 368 MIWGL---AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ-----VKLALNFFDSMRFDYFI 429 (520)
Q Consensus 368 l~~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 429 (520)
+|+++ .+..+++.|+-++-+|++.|-.|....-..++.+....|. +..|...++... ..|.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~-~iG~ 106 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFD-RVGF 106 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHH-HHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HhCC
Confidence 44444 3568999999999999999988877666666666666553 344555555554 3453
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.06 E-value=35 Score=21.10 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 010031 277 AEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 306 (520)
.++|.+.|.+|++..-.++..||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367778888877665455556777777666
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.93 E-value=1.5e+02 Score=22.49 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455565554432 234444444455666777777776666555666665666666666643
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.35 E-value=1.2e+02 Score=22.39 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCCh
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (520)
..++.++...++.-.|.++++.+.+.+...+..+....++.+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 356777777777888999999998887777777777778888877744
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.63 E-value=1.8e+02 Score=21.53 Aligned_cols=141 Identities=13% Similarity=0.021 Sum_probs=66.0
Q ss_pred HHHHhcCCChHHHHHHhcccC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc---cHHHHHHHHhcc
Q 010031 70 ISSASLHKSIDYALSIFDHFT-P---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL---TYPFVSKSVASL 142 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 142 (520)
+...++.|+.+.+..+++... . .+..-++. +.. +..|+.+- ++.+.+.|..++.. -.+ .+...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~-~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 78 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQV-MMFGSTAI----ALELLKQGASPNVQDTSGTS-PVHDAART 78 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCH-HHH-SCTTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcH-HHH-HHcCCHHH----HHHHHHCCCCCCCcCCCCCC-HHHHHHHc
Confidence 334455677777777776521 1 12222232 333 55566543 33334445444322 222 33333445
Q ss_pred CChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 010031 143 SLLSLGRGLHCLIVKSGVEYDAF--VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220 (520)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 220 (520)
|+.+ +.+.+.+.|..++.. .-...+...+..|+.+-+..+++. .... ..+..-.+ -+...+..|+.+-+.-
T Consensus 79 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t-~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 79 GFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLT-PLELALQRGAQDLVDI 151 (156)
T ss_dssp TCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCC-HHHHHHHSCCHHHHHH
T ss_pred CcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCC-HHHHHHHcCcHHHHHH
Confidence 5554 444455556444322 111233444567777777766666 3222 12222222 2344467777777666
Q ss_pred HHhh
Q 010031 221 LFGM 224 (520)
Q Consensus 221 ~~~~ 224 (520)
+++.
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 6554
No 338
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.47 E-value=1.1e+02 Score=19.86 Aligned_cols=32 Identities=13% Similarity=-0.078 Sum_probs=23.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
+...+...|+.++|...+-+++...|+-...+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 45567778888888888888888877644433
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.45 E-value=1.6e+02 Score=22.73 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=47.0
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCC
Q 010031 278 EKALAMFFQ-MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN--DFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 278 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 346 (520)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444544444 45668877654 345666777777888899999999877 666677666666777777764
No 340
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.38 E-value=1.5e+02 Score=20.16 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChh
Q 010031 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111 (520)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 111 (520)
...+++.+.+.|+- +..-...+.. .....++|..+++.++.++..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 45677778777754 3333333333 3678889999999999888999999999988877643
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.98 E-value=1.2e+02 Score=23.47 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhccCCh
Q 010031 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 249 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~ 312 (520)
+.+.+++-.-+-+..-..++..+...+.+-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333443333333444566777788888888899999999887 6667777777777777666643
No 342
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.62 E-value=1.2e+02 Score=18.65 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=14.4
Q ss_pred hcCChhHHHHHhccCCCCCCCCC
Q 010031 176 QLGKTRGAFKVFDETPEKNKSES 198 (520)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~ 198 (520)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777776666554444
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.35 E-value=1.4e+02 Score=21.85 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=22.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 310 (520)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444455556666666655554445555555555444444
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.29 E-value=1.2e+02 Score=22.65 Aligned_cols=48 Identities=4% Similarity=0.054 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCCh
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (520)
..++.++...++.-.|.++++.+.+.+...+..+....++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 356667777667778888888888877767776666777777777644
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.62 E-value=3e+02 Score=22.14 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC-----hHHHHHHHHHHHHcCC
Q 010031 264 WTAMINGF---SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-----LEAGVRVHNYISCNDF 327 (520)
Q Consensus 264 ~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 327 (520)
+.-+++++ .+..+++.|+-++-+|++.| .|....-..++.+....|. ...|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33455555 45688999999999999999 7766666666666655553 2333444444444453
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.26 E-value=1.7e+02 Score=21.73 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4555555555666777777776665555555544455566655544
No 347
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=20.85 E-value=88 Score=21.30 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
++.|+.++++++..+ .-++..|..++..+
T Consensus 10 ~~~A~~YvnkVK~rF--~~~p~~Y~~FL~IL 38 (89)
T 1g1e_B 10 FNHAINYVNKIKNRF--QGQPDIYKAFLEIL 38 (89)
T ss_dssp HHHHHHHHHHHHHHT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 455666666665433 22444555544443
No 348
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.36 E-value=2.1e+02 Score=19.38 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 010031 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 379 (520)
....+.|..+++.+.+++...|..+..++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 455666666776666666666666666666655533
No 349
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.11 E-value=66 Score=19.85 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=15.4
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCCh
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSV 433 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~ 433 (520)
.-|++.|...|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 447777777777776555566553
Done!