Query 010034
Match_columns 519
No_of_seqs 345 out of 2531
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 20:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 6E-48 1.3E-52 354.7 23.5 352 1-381 1-367 (392)
2 PLN02193 nitrile-specifier pro 100.0 1E-43 2.2E-48 376.3 37.8 304 2-324 151-467 (470)
3 PLN02153 epithiospecifier prot 100.0 3E-43 6.4E-48 359.2 36.7 313 2-324 7-338 (341)
4 KOG4441 Proteins containing BT 100.0 1.1E-42 2.5E-47 372.9 29.1 269 31-338 285-555 (571)
5 PLN02193 nitrile-specifier pro 100.0 5.4E-39 1.2E-43 340.1 36.4 293 19-339 110-420 (470)
6 PHA02713 hypothetical protein; 100.0 1.1E-39 2.5E-44 351.0 30.7 269 32-336 259-540 (557)
7 KOG4441 Proteins containing BT 100.0 2.5E-39 5.4E-44 347.1 27.1 255 3-300 312-568 (571)
8 KOG4152 Host cell transcriptio 100.0 1.3E-39 2.8E-44 322.2 21.9 347 1-377 16-404 (830)
9 KOG0379 Kelch repeat-containin 100.0 5E-38 1.1E-42 332.0 31.4 400 11-489 52-464 (482)
10 PLN02153 epithiospecifier prot 100.0 2.1E-37 4.5E-42 316.2 30.7 274 53-337 4-292 (341)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 3.6E-37 7.8E-42 315.2 31.7 278 15-323 3-344 (346)
12 PHA02713 hypothetical protein; 100.0 6.3E-38 1.4E-42 337.6 26.4 241 3-285 283-543 (557)
13 PRK14131 N-acetylneuraminic ac 100.0 1.8E-36 3.9E-41 312.9 31.1 282 15-325 24-368 (376)
14 TIGR03548 mutarot_permut cycli 100.0 1.5E-36 3.3E-41 307.6 29.4 271 18-312 2-314 (323)
15 KOG4693 Uncharacterized conser 100.0 2.6E-36 5.7E-41 277.9 19.6 241 2-255 54-313 (392)
16 PHA03098 kelch-like protein; P 100.0 4.3E-35 9.4E-40 316.9 27.5 268 32-338 252-520 (534)
17 PHA03098 kelch-like protein; P 100.0 1.5E-34 3.3E-39 312.7 28.4 235 20-285 285-521 (534)
18 KOG0379 Kelch repeat-containin 100.0 6.9E-34 1.5E-38 300.6 27.3 250 72-338 56-310 (482)
19 PHA02790 Kelch-like protein; P 100.0 5.3E-33 1.1E-37 295.2 27.3 214 23-283 264-478 (480)
20 TIGR03548 mutarot_permut cycli 100.0 1.4E-32 3E-37 278.6 25.3 235 2-257 51-316 (323)
21 PHA02790 Kelch-like protein; P 100.0 4.4E-32 9.5E-37 288.2 25.7 210 83-336 268-477 (480)
22 KOG1230 Protein containing rep 100.0 1.7E-32 3.6E-37 266.5 19.6 256 14-284 61-349 (521)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-31 3.3E-36 273.7 26.9 241 2-273 41-344 (346)
24 PRK14131 N-acetylneuraminic ac 100.0 2.2E-31 4.8E-36 275.0 27.6 248 3-281 63-374 (376)
25 KOG1230 Protein containing rep 100.0 3.3E-31 7.1E-36 257.6 20.4 257 71-336 61-347 (521)
26 KOG2437 Muskelin [Signal trans 100.0 7.1E-32 1.5E-36 267.1 3.5 376 2-409 239-678 (723)
27 KOG4152 Host cell transcriptio 100.0 3.6E-28 7.8E-33 241.3 15.7 242 55-311 16-274 (830)
28 COG3055 Uncharacterized protei 99.8 6.7E-17 1.5E-21 156.4 20.8 274 15-320 32-369 (381)
29 COG3055 Uncharacterized protei 99.7 1.7E-15 3.8E-20 146.7 20.4 242 2-276 70-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 2.9E-16 6.3E-21 156.8 5.2 203 110-317 237-463 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 6.4E-11 1.4E-15 85.1 6.0 49 76-127 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 3.2E-10 6.9E-15 81.4 6.5 49 126-178 1-50 (50)
33 PLN02772 guanylate kinase 99.0 4.1E-09 8.9E-14 106.6 11.2 89 73-163 21-110 (398)
34 PF13415 Kelch_3: Galactose ox 98.9 3E-09 6.5E-14 75.9 5.6 47 86-135 1-49 (49)
35 PF01344 Kelch_1: Kelch motif; 98.9 3.3E-09 7.1E-14 75.0 5.5 44 76-119 1-45 (47)
36 PF13415 Kelch_3: Galactose ox 98.9 5.8E-09 1.2E-13 74.4 5.9 46 138-186 2-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.8 8.3E-09 1.8E-13 73.6 6.2 44 76-119 1-47 (49)
38 PF13418 Kelch_4: Galactose ox 98.8 5.6E-09 1.2E-13 74.5 4.9 46 76-124 1-48 (49)
39 PLN02772 guanylate kinase 98.8 3.9E-08 8.4E-13 99.6 11.3 90 13-111 18-109 (398)
40 PF13418 Kelch_4: Galactose ox 98.8 6.2E-09 1.3E-13 74.3 4.0 47 126-175 1-48 (49)
41 PF01344 Kelch_1: Kelch motif; 98.7 1.4E-08 3.1E-13 71.7 4.4 46 126-175 1-47 (47)
42 PF07646 Kelch_2: Kelch motif; 98.6 1E-07 2.2E-12 67.9 6.2 43 126-169 1-46 (49)
43 PF13854 Kelch_5: Kelch motif 98.6 8.9E-08 1.9E-12 65.8 5.3 40 73-112 1-42 (42)
44 smart00612 Kelch Kelch domain. 98.6 9.6E-08 2.1E-12 67.1 4.8 47 139-188 1-47 (47)
45 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.9E-12 64.9 5.4 40 16-56 1-42 (42)
46 smart00612 Kelch Kelch domain. 98.5 1.6E-07 3.5E-12 65.9 4.6 46 88-136 1-46 (47)
47 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.9E-05 4.1E-10 75.7 18.4 151 104-287 48-210 (243)
48 PF03089 RAG2: Recombination a 98.4 9.7E-06 2.1E-10 77.1 14.7 181 123-313 19-231 (337)
49 PF03089 RAG2: Recombination a 98.3 2.5E-05 5.5E-10 74.3 14.4 133 7-149 75-231 (337)
50 TIGR01640 F_box_assoc_1 F-box 98.3 0.00032 6.9E-09 67.4 22.4 201 46-277 14-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 98.2 8.2E-05 1.8E-09 71.4 16.5 147 48-226 48-206 (243)
52 TIGR01640 F_box_assoc_1 F-box 98.0 0.0011 2.5E-08 63.5 20.3 188 102-309 14-215 (230)
53 PRK11138 outer membrane biogen 97.1 0.27 5.8E-06 51.2 25.4 219 28-309 67-302 (394)
54 PRK11138 outer membrane biogen 96.7 0.52 1.1E-05 49.1 23.3 195 46-308 170-383 (394)
55 PF07893 DUF1668: Protein of u 96.5 0.13 2.8E-06 52.5 16.7 120 27-169 73-215 (342)
56 PF12768 Rax2: Cortical protei 96.3 0.053 1.1E-06 53.5 11.8 112 44-169 14-129 (281)
57 TIGR03300 assembly_YfgL outer 96.1 2.1 4.4E-05 44.2 23.8 197 46-308 155-368 (377)
58 TIGR03300 assembly_YfgL outer 96.1 1.7 3.6E-05 44.8 22.8 167 84-307 143-326 (377)
59 PF13360 PQQ_2: PQQ-like domai 95.8 1.7 3.7E-05 41.2 25.6 185 26-278 32-233 (238)
60 PF12768 Rax2: Cortical protei 95.6 0.13 2.9E-06 50.7 11.4 113 100-227 14-130 (281)
61 KOG2055 WD40 repeat protein [G 95.5 0.81 1.8E-05 47.0 16.5 154 31-223 225-379 (514)
62 PF07893 DUF1668: Protein of u 95.3 0.52 1.1E-05 48.1 14.9 126 136-285 75-217 (342)
63 PRK13684 Ycf48-like protein; P 95.1 3.5 7.6E-05 41.9 20.3 178 25-253 137-322 (334)
64 cd00094 HX Hemopexin-like repe 95.1 1.6 3.4E-05 40.7 16.3 152 81-278 11-178 (194)
65 PRK13684 Ycf48-like protein; P 95.1 4.6 9.9E-05 41.1 24.1 177 86-310 142-322 (334)
66 TIGR02800 propeller_TolB tol-p 94.7 6.4 0.00014 41.0 23.8 162 86-284 200-363 (417)
67 PRK04792 tolB translocation pr 94.5 5.9 0.00013 42.1 21.0 147 46-226 242-390 (448)
68 PRK05137 tolB translocation pr 94.4 7.8 0.00017 40.9 22.3 193 46-284 226-421 (435)
69 TIGR02800 propeller_TolB tol-p 94.3 7.7 0.00017 40.4 21.5 146 46-226 214-362 (417)
70 PF08450 SGL: SMP-30/Gluconola 94.2 5.6 0.00012 38.2 22.8 199 30-284 11-222 (246)
71 cd00094 HX Hemopexin-like repe 94.2 3.1 6.6E-05 38.7 15.9 153 23-221 10-178 (194)
72 PRK04792 tolB translocation pr 94.0 9.7 0.00021 40.4 23.9 148 102-284 242-391 (448)
73 KOG2055 WD40 repeat protein [G 93.8 1.1 2.5E-05 46.0 12.8 183 87-313 225-410 (514)
74 PRK00178 tolB translocation pr 93.8 10 0.00022 39.8 21.5 183 46-277 223-408 (430)
75 PRK00178 tolB translocation pr 93.7 11 0.00023 39.7 24.0 147 102-284 223-372 (430)
76 PRK04922 tolB translocation pr 93.6 11 0.00024 39.7 21.9 187 46-282 228-418 (433)
77 PRK05137 tolB translocation pr 93.6 11 0.00024 39.7 25.4 146 102-283 226-374 (435)
78 PF13360 PQQ_2: PQQ-like domai 93.1 7.8 0.00017 36.6 26.3 196 46-308 3-219 (238)
79 PF05096 Glu_cyclase_2: Glutam 92.5 1.2 2.6E-05 43.3 10.3 107 136-278 54-160 (264)
80 PF02897 Peptidase_S9_N: Proly 92.1 10 0.00022 39.6 17.9 215 29-283 133-366 (414)
81 cd00200 WD40 WD40 domain, foun 92.0 11 0.00023 35.4 24.0 110 29-166 19-128 (289)
82 PF09910 DUF2139: Uncharacteri 92.0 8.1 0.00018 38.0 15.1 159 16-193 29-219 (339)
83 PF05096 Glu_cyclase_2: Glutam 91.9 5.5 0.00012 38.8 14.1 157 29-225 54-210 (264)
84 cd00200 WD40 WD40 domain, foun 91.6 12 0.00026 35.1 24.6 107 29-164 61-168 (289)
85 PF08268 FBA_3: F-box associat 91.4 2.5 5.3E-05 36.4 10.4 84 137-226 5-88 (129)
86 PRK03629 tolB translocation pr 91.2 22 0.00047 37.5 24.5 172 102-312 223-395 (429)
87 PRK04922 tolB translocation pr 91.1 22 0.00048 37.4 23.0 147 102-284 228-377 (433)
88 KOG0310 Conserved WD40 repeat- 89.3 31 0.00066 36.1 19.0 219 25-313 74-302 (487)
89 PRK04043 tolB translocation pr 89.2 32 0.00069 36.2 20.0 151 102-285 213-367 (419)
90 TIGR03866 PQQ_ABC_repeats PQQ- 89.0 23 0.00049 34.2 24.8 102 32-164 2-106 (300)
91 PF08450 SGL: SMP-30/Gluconola 88.8 23 0.00049 33.9 19.6 164 29-226 50-221 (246)
92 PF14870 PSII_BNR: Photosynthe 88.6 28 0.00061 34.8 23.2 240 3-312 7-254 (302)
93 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.5 41 0.00089 36.5 24.5 125 29-169 68-199 (527)
94 PF02897 Peptidase_S9_N: Proly 88.2 25 0.00054 36.6 16.9 190 86-309 134-344 (414)
95 PRK02889 tolB translocation pr 87.5 41 0.00088 35.4 21.6 147 102-284 220-369 (427)
96 PLN00033 photosystem II stabil 87.2 41 0.00089 35.1 21.2 111 113-252 271-389 (398)
97 PF08268 FBA_3: F-box associat 87.1 11 0.00023 32.3 11.2 82 31-119 6-89 (129)
98 PF03178 CPSF_A: CPSF A subuni 86.7 14 0.0003 37.2 13.4 140 138-311 42-193 (321)
99 PRK04043 tolB translocation pr 86.0 49 0.0011 34.8 21.9 194 46-284 213-409 (419)
100 PRK11028 6-phosphogluconolacto 86.0 40 0.00087 33.8 24.4 107 31-163 47-158 (330)
101 PRK03629 tolB translocation pr 85.2 54 0.0012 34.5 21.4 190 46-282 223-413 (429)
102 COG4946 Uncharacterized protei 84.7 56 0.0012 34.3 16.2 42 100-145 105-146 (668)
103 PLN00181 protein SPA1-RELATED; 84.4 83 0.0018 36.1 22.6 64 87-164 545-609 (793)
104 PF02191 OLF: Olfactomedin-lik 83.0 47 0.001 32.2 17.2 157 73-251 65-237 (250)
105 PF12217 End_beta_propel: Cata 83.0 47 0.001 32.2 18.4 222 24-254 79-334 (367)
106 PF14870 PSII_BNR: Photosynthe 82.0 59 0.0013 32.5 19.8 198 2-252 91-294 (302)
107 PRK11028 6-phosphogluconolacto 82.0 59 0.0013 32.5 23.8 104 32-162 3-111 (330)
108 PRK02889 tolB translocation pr 81.5 74 0.0016 33.4 21.1 146 46-226 220-368 (427)
109 PF12217 End_beta_propel: Cata 81.4 54 0.0012 31.7 22.1 208 31-253 26-258 (367)
110 TIGR03866 PQQ_ABC_repeats PQQ- 80.3 57 0.0012 31.3 24.8 104 32-165 44-149 (300)
111 PF10282 Lactonase: Lactonase, 79.5 56 0.0012 33.2 14.6 169 78-284 145-333 (345)
112 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.5 1.1E+02 0.0024 33.2 18.4 97 82-193 65-171 (527)
113 COG4257 Vgb Streptogramin lyas 73.1 99 0.0021 30.4 18.9 182 47-284 125-314 (353)
114 KOG2321 WD40 repeat protein [G 72.5 1E+02 0.0022 33.3 13.8 63 124-197 131-196 (703)
115 PF02191 OLF: Olfactomedin-lik 71.1 1E+02 0.0023 29.8 17.4 163 16-194 65-237 (250)
116 PF14583 Pectate_lyase22: Olig 70.9 89 0.0019 32.3 13.0 238 28-311 44-303 (386)
117 COG4257 Vgb Streptogramin lyas 70.8 1.1E+02 0.0024 30.1 16.8 85 103-198 84-169 (353)
118 PF06433 Me-amine-dh_H: Methyl 70.4 1.3E+02 0.0028 30.6 15.5 117 31-167 3-132 (342)
119 KOG0310 Conserved WD40 repeat- 70.2 39 0.00084 35.4 10.1 119 128-280 70-190 (487)
120 PLN00033 photosystem II stabil 69.8 1.5E+02 0.0032 31.0 26.6 133 2-168 75-214 (398)
121 PF03178 CPSF_A: CPSF A subuni 68.7 98 0.0021 30.9 13.0 120 46-194 62-190 (321)
122 PF02239 Cytochrom_D1: Cytochr 68.4 1.5E+02 0.0032 30.6 14.5 213 45-309 15-237 (369)
123 COG4946 Uncharacterized protei 67.4 1.7E+02 0.0037 30.9 17.7 195 28-284 234-440 (668)
124 PF10282 Lactonase: Lactonase, 66.4 1.5E+02 0.0033 30.0 21.8 231 35-308 3-263 (345)
125 cd00216 PQQ_DH Dehydrogenases 65.8 1.9E+02 0.0042 30.9 21.2 76 82-169 57-138 (488)
126 PRK01742 tolB translocation pr 65.6 1.8E+02 0.0039 30.5 22.5 60 102-169 228-288 (429)
127 KOG0306 WD40-repeat-containing 60.6 2.8E+02 0.0062 31.1 19.2 66 82-163 379-444 (888)
128 PTZ00421 coronin; Provisional 59.1 2.6E+02 0.0056 30.1 21.8 64 87-164 138-201 (493)
129 PF09910 DUF2139: Uncharacteri 58.7 2E+02 0.0043 28.7 18.3 124 80-222 40-185 (339)
130 PF13088 BNR_2: BNR repeat-lik 57.1 1.9E+02 0.0041 27.9 13.3 156 26-192 114-275 (275)
131 PLN00181 protein SPA1-RELATED; 54.2 3.9E+02 0.0084 30.6 23.2 61 86-163 587-650 (793)
132 KOG2321 WD40 repeat protein [G 54.2 1.5E+02 0.0034 32.0 11.2 126 16-166 130-263 (703)
133 smart00284 OLF Olfactomedin-li 53.7 2.2E+02 0.0048 27.7 17.1 166 16-193 70-241 (255)
134 COG1343 CRISPR-associated prot 53.5 40 0.00087 27.0 5.4 70 418-495 16-85 (89)
135 PRK10115 protease 2; Provision 52.8 3.8E+02 0.0083 30.2 23.4 216 25-285 177-404 (686)
136 cd00216 PQQ_DH Dehydrogenases 51.8 3.3E+02 0.0072 29.2 25.5 63 101-168 255-328 (488)
137 PF02239 Cytochrom_D1: Cytochr 50.5 3E+02 0.0066 28.3 13.6 231 45-309 99-335 (369)
138 KOG4649 PQQ (pyrrolo-quinoline 49.8 2.6E+02 0.0056 27.4 14.8 107 25-164 16-126 (354)
139 KOG0318 WD40 repeat stress pro 48.5 3.8E+02 0.0081 28.8 14.0 142 128-312 444-594 (603)
140 KOG0289 mRNA splicing factor [ 48.1 3.1E+02 0.0067 28.7 11.9 125 126-287 347-474 (506)
141 COG1520 FOG: WD40-like repeat 47.2 3.3E+02 0.0071 27.8 23.3 111 27-169 65-181 (370)
142 PRK01742 tolB translocation pr 45.4 3.8E+02 0.0083 28.0 21.0 161 46-253 228-391 (429)
143 smart00284 OLF Olfactomedin-li 45.3 3E+02 0.0065 26.8 17.7 157 73-251 70-242 (255)
144 PLN02919 haloacid dehalogenase 44.2 6.3E+02 0.014 30.2 26.7 159 86-278 694-891 (1057)
145 KOG0281 Beta-TrCP (transducin 43.7 1.7E+02 0.0037 29.7 9.1 78 233-330 358-435 (499)
146 PTZ00420 coronin; Provisional 42.8 5E+02 0.011 28.6 16.9 61 88-164 139-200 (568)
147 PF09826 Beta_propel: Beta pro 42.0 4.9E+02 0.011 28.3 20.0 174 137-327 171-357 (521)
148 PRK10115 protease 2; Provision 39.4 6E+02 0.013 28.6 21.9 211 30-283 137-354 (686)
149 PLN02919 haloacid dehalogenase 37.1 8E+02 0.017 29.3 30.7 244 30-312 579-880 (1057)
150 COG1520 FOG: WD40-like repeat 36.5 4.8E+02 0.01 26.6 22.5 110 30-168 111-226 (370)
151 PF14583 Pectate_lyase22: Olig 34.9 4E+02 0.0087 27.6 10.7 111 22-147 191-303 (386)
152 KOG0296 Angio-associated migra 33.1 5.5E+02 0.012 26.3 14.6 109 30-168 75-185 (399)
153 PF14298 DUF4374: Domain of un 31.4 6.5E+02 0.014 26.6 12.5 61 101-165 366-428 (435)
154 KOG2150 CCR4-NOT transcription 30.8 65 0.0014 34.7 4.3 37 417-456 50-87 (575)
155 COG4880 Secreted protein conta 30.4 6.7E+02 0.014 26.4 11.9 194 42-283 402-598 (603)
156 PF13540 RCC1_2: Regulator of 30.4 68 0.0015 19.7 2.8 18 21-38 8-25 (30)
157 COG3823 Glutamine cyclotransfe 29.6 5E+02 0.011 24.7 12.5 57 81-146 50-109 (262)
158 KOG0289 mRNA splicing factor [ 29.4 6.9E+02 0.015 26.3 14.1 57 104-169 413-470 (506)
159 KOG0649 WD40 repeat protein [G 29.0 5.4E+02 0.012 24.9 16.1 148 16-196 112-264 (325)
160 PTZ00421 coronin; Provisional 27.3 8.1E+02 0.017 26.4 18.6 63 32-113 139-201 (493)
161 KOG1036 Mitotic spindle checkp 26.9 6.5E+02 0.014 25.2 15.2 80 103-198 36-116 (323)
162 PRK01029 tolB translocation pr 25.4 8E+02 0.017 25.7 21.0 62 210-284 351-412 (428)
163 PF05567 Neisseria_PilC: Neiss 25.2 6.2E+02 0.013 25.7 10.3 22 31-54 95-116 (335)
164 PF13088 BNR_2: BNR repeat-lik 24.2 6.3E+02 0.014 24.1 20.0 228 56-306 30-275 (275)
165 TIGR02658 TTQ_MADH_Hv methylam 23.7 8E+02 0.017 25.1 26.7 118 32-167 14-142 (352)
166 COG0823 TolB Periplasmic compo 23.3 8.9E+02 0.019 25.5 12.5 107 152-285 261-369 (425)
167 KOG1408 WD40 repeat protein [F 22.9 9.1E+02 0.02 27.3 11.0 71 23-94 338-409 (1080)
168 PLN03215 ascorbic acid mannose 21.6 9.1E+02 0.02 25.0 15.0 96 55-169 189-302 (373)
169 PF13570 PQQ_3: PQQ-like domai 21.6 2.4E+02 0.0051 18.2 4.6 23 27-55 18-40 (40)
170 PF14298 DUF4374: Domain of un 21.4 9.8E+02 0.021 25.3 15.8 59 210-279 367-428 (435)
171 PF12247 MKT1_N: Temperature d 21.2 12 0.00025 30.2 -2.5 35 447-481 51-85 (90)
172 KOG0278 Serine/threonine kinas 20.8 7.9E+02 0.017 24.0 11.3 68 230-313 222-290 (334)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=6e-48 Score=354.69 Aligned_cols=352 Identities=22% Similarity=0.334 Sum_probs=294.4
Q ss_pred CceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCCCc-----cCCcEEEEEcCCCcEEeeeec--CCCC--CCC
Q 010034 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKR-----FLSDVVVYDIDNKLWFQPECT--GNGS--NGQ 71 (519)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~-----~~~~~~~yd~~~~~W~~l~~~--~~~~--~~~ 71 (519)
|++|+--.+ --+.|.+|+++.++ .+||.|||+-.+. .--|+.++|..+-+|++++.. .... ..+
T Consensus 1 m~~WTVHLe------GGPrRVNHAavaVG-~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp 73 (392)
T KOG4693|consen 1 MATWTVHLE------GGPRRVNHAAVAVG-SRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYP 73 (392)
T ss_pred CceEEEEec------CCcccccceeeeec-ceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCC
Confidence 788988773 23579999999999 6999999975432 334899999999999999762 2111 234
Q ss_pred CCCCCcceeEEEEeCCeEEEEccccC-CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCC--
Q 010034 72 VGPGPRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-- 148 (519)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~-- 148 (519)
..|-.|++|+.+.+++++||+||++. ....|.++.||+++++|......|-+|.+|.+|++|++++ .+|||||+..
T Consensus 74 ~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a 152 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDA 152 (392)
T ss_pred ccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEecChHHHH
Confidence 55677999999999999999999987 5667889999999999999888889999999999999987 9999999964
Q ss_pred CcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCc---ccccccccccccccCCCCceEEe
Q 010034 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI---MGDLWALKGLIEEENETPGWTQL 225 (519)
Q Consensus 149 ~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~---~~d~~~l~~v~~Yd~~t~~W~~i 225 (519)
..+.++++.+|+.|.+|+.+.+.|..|.-|..|+++++++.+|||||+++.... .++.+ ++.+..+|..+..|...
T Consensus 153 ~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Y-c~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 153 QRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQY-CDTIMALDLATGAWTRT 231 (392)
T ss_pred HhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhh-cceeEEEeccccccccC
Confidence 468899999999999999999999989999999999999999999999875432 22333 47888999999999999
Q ss_pred cCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEE
Q 010034 226 KLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYL 305 (519)
Q Consensus 226 ~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iy 305 (519)
+..+..|..|..|++.++++++|+|||+.+.- +.-.|++|.|||.+..|+.+...+..|++|..+++++.++++|
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l-----n~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL-----NVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchhh-----hhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence 88778999999999999999999999987632 3567999999999999999999998999999999999999999
Q ss_pred EEccCCCCCCccceEEecCCCcccccccccCCCCCCCCCCcccccccccceecCCcccceeeeeecccccCceecc
Q 010034 306 LFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSL 381 (519)
Q Consensus 306 v~GG~~~~~~~~D~w~l~~~~d~~~~~w~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 381 (519)
+|||........ -. .++.--.+++..+.+...+|+ |++.|++++++.+.+|+++++++.+-
T Consensus 307 LFGGTsP~~~~~--------~S-pt~~~G~~~~~~LiD~SDLHv------LDF~PsLKTLa~~~Vl~~~ldqs~Lp 367 (392)
T KOG4693|consen 307 LFGGTSPLPCHP--------LS-PTNYNGMISPSGLIDLSDLHV------LDFAPSLKTLAMQSVLMFELDQSELP 367 (392)
T ss_pred EecCCCCCCCCC--------CC-ccccCCCCCccccccccccee------eecChhHHHHHHHHHHHHhhhhhhcc
Confidence 999976421110 00 112222455667778888888 99999999999999999999988773
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1e-43 Score=376.25 Aligned_cols=304 Identities=24% Similarity=0.428 Sum_probs=250.5
Q ss_pred ceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCC-C-ccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCC-Ccc
Q 010034 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-K-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~-~-~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~-~R~ 78 (519)
.+|.++.+ .+..|.||.+|++++++ +.||||||... . ...+++|+||+.+++|+.++..+ +.|. +|.
T Consensus 151 ~~W~~~~~---~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQ---KGEGPGLRCSHGIAQVG-NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG------DVPHLSCL 220 (470)
T ss_pred ceEEEccc---CCCCCCCccccEEEEEC-CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC------CCCCCccc
Confidence 37998874 34579999999999998 59999999753 2 34578999999999999876432 1333 467
Q ss_pred eeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEE
Q 010034 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (519)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (519)
+|++++++++||||||......++++|+||+.+++|+++++.+..|.+|..|++++.++ +||||||.+.....++++.|
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred ceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCCCCcceEEEE
Confidence 89999999999999999887788999999999999999986445589999999998865 99999999887788999999
Q ss_pred ECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCccee
Q 010034 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (519)
Q Consensus 159 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~ 238 (519)
|+.+++|+.++..+.+|.+|.+|+++.+++++||+||.... .++.+++||+.+++|+.+...+..|.+|..|
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 99999999998666788999999999999999999997542 2477888999999999998766789999999
Q ss_pred EEEEeCCEEEEEeccCCCCC--cccccceeCcEEEEEcCCCeEEEcccCC---CCCCCCcceEEE--Ee-C-CEEEEEcc
Q 010034 239 TITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGN---EPPPARAYHSMT--CL-G-SLYLLFGG 309 (519)
Q Consensus 239 s~~~~~~~iyv~GG~~~~~~--~~~~~~~~~~v~~yd~~t~~W~~v~~~~---~~p~~R~~~~~v--~~-~-~~iyv~GG 309 (519)
++++.+++|||+||...... ......+.+++|+||+.+++|+.+..++ .+|.+|..|+++ .+ + +.+++|||
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcC
Confidence 99999999999999764211 0111246789999999999999998654 357888877543 23 3 45999999
Q ss_pred CCC-CCCccceEEecC
Q 010034 310 FDG-KSTFGDIWWLVP 324 (519)
Q Consensus 310 ~~~-~~~~~D~w~l~~ 324 (519)
... +..++|+|.|..
T Consensus 452 ~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 452 KAPTNDRFDDLFFYGI 467 (470)
T ss_pred CCCccccccceEEEec
Confidence 975 567999998854
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3e-43 Score=359.23 Aligned_cols=313 Identities=23% Similarity=0.390 Sum_probs=242.9
Q ss_pred ceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCC--CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCC-Ccc
Q 010034 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~-~R~ 78 (519)
-.|.++.+. .|..|.||.+|++++++ +.|||+||... ....+++|+||+.+++|+.++..+ ..|. .+.
T Consensus 7 ~~W~~~~~~--~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~p~~~~~ 77 (341)
T PLN02153 7 GGWIKVEQK--GGKGPGPRCSHGIAVVG-DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG------DVPRISCL 77 (341)
T ss_pred CeEEEecCC--CCCCCCCCCcceEEEEC-CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC------CCCCCccC
Confidence 469999753 34579999999999998 59999999853 335689999999999999876432 1222 345
Q ss_pred eeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeC--CCCCCCCCccEEEEECCcEEEEEecCCCC------c
Q 010034 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF--GDLPSPRDFAAASAIGNRKIVMYGGWDGK------K 150 (519)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~--g~~P~~r~~~~~~~~~~~~iyv~GG~~~~------~ 150 (519)
+|++++++++||+|||......++++++||+.+++|+.+++. ...|.+|..|++++.++ +|||+||.+.. .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCc
Confidence 789999999999999998777789999999999999998741 12388999999998865 99999998643 2
Q ss_pred CCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCc-ccccccccccccccCCCCceEEecCCC
Q 010034 151 WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI-MGDLWALKGLIEEENETPGWTQLKLPG 229 (519)
Q Consensus 151 ~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~d~~~l~~v~~Yd~~t~~W~~i~~~g 229 (519)
.++++++||+.+++|+.++..+..|.+|.+|+++.++++|||+||....... ..+...++.+++||+.+++|+.+...+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 4578999999999999998555566899999999999999999997532100 001123578899999999999998777
Q ss_pred CCCCCcceeEEEEeCCEEEEEeccCCCCC--cccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcc--eEEEEe--CCE
Q 010034 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAY--HSMTCL--GSL 303 (519)
Q Consensus 230 ~~P~~r~~~s~~~~~~~iyv~GG~~~~~~--~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~--~~~v~~--~~~ 303 (519)
.+|.+|..|++++.+++||||||...... ........+++|+||+.+++|+.+.....+|.||.. ++++.+ +++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 78999999999999999999999742110 001124678999999999999999865545555533 344433 458
Q ss_pred EEEEccCCCC-CCccceEEecC
Q 010034 304 YLLFGGFDGK-STFGDIWWLVP 324 (519)
Q Consensus 304 iyv~GG~~~~-~~~~D~w~l~~ 324 (519)
|||+||.... ..++|+|.|..
T Consensus 317 ~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 317 LLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred EEEEcCcCCCCccccceEEEec
Confidence 9999999764 58899987753
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=372.86 Aligned_cols=269 Identities=24% Similarity=0.411 Sum_probs=249.4
Q ss_pred cEEEEEcCcCC-CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEcccc-CCcCCCcEEEEE
Q 010034 31 SKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLD 108 (519)
Q Consensus 31 ~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~-~~~~~~dv~~yd 108 (519)
+.||++||+.+ ....+.+.+||+.++.|..++ ++|.+|..+++++++++||++||++ +...++++++||
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---------~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---------PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecC---------CCCcccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence 68999999986 788899999999999999986 6899999999999999999999999 788899999999
Q ss_pred CCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC
Q 010034 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (519)
Q Consensus 109 ~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~ 188 (519)
+.+++|..++ +|+.+|..++++++++ .||++||+++...++++++||+.+++|+.++ +|+.+|++|+++.+++
T Consensus 356 ~~~~~W~~~a---~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTPVA---PMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceeccC---CccCccccceeEEECC-EEEEEeccccccccccEEEecCCCCcccccC---CCCcceeeeEEEEECC
Confidence 9999999988 6999999999999965 9999999999999999999999999999998 8999999999999999
Q ss_pred EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCc
Q 010034 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYND 268 (519)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 268 (519)
+||++||.+.... .++++++|||.+++|+.++ +++.+|.++++++.+++||++||.++.. ....
T Consensus 429 ~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~-------~~~~ 492 (571)
T KOG4441|consen 429 KLYIIGGGDGSSN------CLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTS-------ALSS 492 (571)
T ss_pred EEEEEcCcCCCcc------ccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCCC-------ccce
Confidence 9999999877653 5799999999999999999 8999999999999999999999998732 4566
Q ss_pred EEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCCCCccceEEecCCCcccccccccCCC
Q 010034 269 TIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (519)
Q Consensus 269 v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~~~~D~w~l~~~~d~~~~~w~~~~~ 338 (519)
+++|||.+++|+.+..+ +.+|..++++++++++|++||+++...++. ++.|||.+++|+..++
T Consensus 493 VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~----ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNT----VECYDPETDTWTEVTE 555 (571)
T ss_pred EEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccce----eEEcCCCCCceeeCCC
Confidence 99999999999999875 449999999999999999999999888888 6788999999998866
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.4e-39 Score=340.12 Aligned_cols=293 Identities=23% Similarity=0.348 Sum_probs=238.0
Q ss_pred CCcceEEEEECCcEEEEEcCcCCCccCCcEEEE--EcCC----CcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEE
Q 010034 19 PRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVY--DIDN----KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (519)
Q Consensus 19 ~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~y--d~~~----~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~ 92 (519)
...|...+. .+++|+.|+|..+. .++.+-+| ++.+ ++|..++..+ .+|.||.+|++++++++|||+
T Consensus 110 ~~~g~~f~~-~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~------~~P~pR~~h~~~~~~~~iyv~ 181 (470)
T PLN02193 110 KRPGVKFVL-QGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG------EGPGLRCSHGIAQVGNKIYSF 181 (470)
T ss_pred cCCCCEEEE-cCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC------CCCCCccccEEEEECCEEEEE
Confidence 345555554 45899999998654 35555555 6544 7999987543 368999999999999999999
Q ss_pred ccccC-C-cCCCcEEEEECCCCeEEEEeeCCCCCCC-CCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEec
Q 010034 93 GGRFG-S-RRLGDFWVLDTDIWQWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 93 GG~~~-~-~~~~dv~~yd~~t~~W~~~~~~g~~P~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
||... . ...+++|+||+.+++|+.+++.+++|.. |..|+++++++ +||||||.+....++++|+||+.+++|++++
T Consensus 182 GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 182 GGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred CCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCCEEEEcC
Confidence 99853 2 2347899999999999988766566653 66888888866 9999999988778899999999999999998
Q ss_pred cCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEE
Q 010034 170 VTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (519)
Q Consensus 170 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv 249 (519)
+.+..|.+|+.|+++.++++|||+||.+... .++.+++||+.+++|+.++.++.+|.+|.+|++++.+++||+
T Consensus 261 ~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATA-------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWV 333 (470)
T ss_pred cCCCCCCCccceEEEEECCEEEEECCCCCCC-------CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEE
Confidence 5444589999999999999999999987543 357788999999999999877778899999999999999999
Q ss_pred EeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCC---------CCccceE
Q 010034 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDIW 320 (519)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~---------~~~~D~w 320 (519)
+||.... ..+++++||+.+++|+.++.++..|.+|..|+++.++++|||+||.... ...+|+|
T Consensus 334 iGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 334 VYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred EECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEE
Confidence 9997532 3689999999999999999877778999999999999999999997531 2356777
Q ss_pred EecCCCcccccccccCCCC
Q 010034 321 WLVPEEDPIAKRYTESPPK 339 (519)
Q Consensus 321 ~l~~~~d~~~~~w~~~~~~ 339 (519)
.|+ +.+++|+..+..
T Consensus 406 ~~D----~~t~~W~~~~~~ 420 (470)
T PLN02193 406 ALD----TETLQWERLDKF 420 (470)
T ss_pred EEE----cCcCEEEEcccC
Confidence 554 557778776543
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=351.05 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=227.5
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEcccc-CCcCCCcEEEEECC
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLDTD 110 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~-~~~~~~dv~~yd~~ 110 (519)
.+++.||. .......+++||+.+++|..++ ++|.+|.+|++++++++||++||.. +....+++++||+.
T Consensus 259 ~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~---------~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~ 328 (557)
T PHA02713 259 CLVCHDTK-YNVCNPCILVYNINTMEYSVIS---------TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE 328 (557)
T ss_pred EEEEecCc-cccCCCCEEEEeCCCCeEEECC---------CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC
Confidence 45555552 1223357899999999999985 5788999999999999999999986 34457889999999
Q ss_pred CCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEE
Q 010034 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (519)
Q Consensus 111 t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~l 190 (519)
+++|.+++ +||.+|..++++++++ +||++||.++....+++++||+.+++|+.++ +||.+|.+++++.++++|
T Consensus 329 ~n~W~~~~---~m~~~R~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 329 NKIHVELP---PMIKNRCRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred CCeEeeCC---CCcchhhceeEEEECC-EEEEECCcCCCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 99999998 6999999999999965 9999999987777889999999999999998 999999999999999999
Q ss_pred EEEcccCCCCCc-----cc------ccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCc
Q 010034 191 LIYGGRGGGGPI-----MG------DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (519)
Q Consensus 191 yv~GG~~~~~~~-----~~------d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~ 259 (519)
|++||.+..... ++ +...++.+++|||.+++|+.++ ++|.+|..+++++.+++||++||.+...
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~-- 476 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEK-- 476 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCC--
Confidence 999998643210 00 0112578999999999999998 8999999999999999999999986432
Q ss_pred ccccceeCcEEEEEcCC-CeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCCCCccceEEecCCCcccccccccC
Q 010034 260 SRYDIYYNDTIILDRLS-AQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTES 336 (519)
Q Consensus 260 ~~~~~~~~~v~~yd~~t-~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~~~~D~w~l~~~~d~~~~~w~~~ 336 (519)
...+.+++|||.+ ++|+.++++ |.+|..+++++++++||++||+++.. ..+.||+.+++|+..
T Consensus 477 ----~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~~-------~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 477 ----NVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESYM-------LQDTFNVYTYEWNHI 540 (557)
T ss_pred ----ccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeeccee-------ehhhcCcccccccch
Confidence 2335689999999 899999985 56999999999999999999988731 377999999999977
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=347.14 Aligned_cols=255 Identities=21% Similarity=0.354 Sum_probs=232.0
Q ss_pred eeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcC-CCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 010034 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (519)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~ 81 (519)
.|..++ ++|.+|..+++++++ +.||++||.+ +...++.+|+||+.+++|+.++ +|+.+|..++
T Consensus 312 ~w~~~a------~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---------~M~~~R~~~~ 375 (571)
T KOG4441|consen 312 EWSSLA------PMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---------PMNTKRSDFG 375 (571)
T ss_pred cEeecC------CCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC---------CccCccccce
Confidence 588888 799999999999998 5999999999 7889999999999999999975 7899999999
Q ss_pred EEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCc-CCCcEEEEEC
Q 010034 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDT 160 (519)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~ 160 (519)
++++++.||++||.++...++++++||+.+++|+.++ +|+.+|.+|++++.++ +||++||.++.. .++++++|||
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCCcccccC---CCCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEEcC
Confidence 9999999999999999999999999999999999998 6999999999999955 999999998877 9999999999
Q ss_pred CCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEE
Q 010034 161 ISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (519)
Q Consensus 161 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~ 240 (519)
.|++|+.++ +|+.+|.++++++++++||++||.++.. .++.+++|||.+++|+.++ +++.+|..+++
T Consensus 452 ~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~ 518 (571)
T KOG4441|consen 452 ETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVA---PMTSPRSAVGV 518 (571)
T ss_pred CCCceeecC---CcccccccceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcc---cCccccccccE
Confidence 999999999 9999999999999999999999998743 3577999999999999997 89999999999
Q ss_pred EEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEe
Q 010034 241 TSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL 300 (519)
Q Consensus 241 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~ 300 (519)
++.++++|++||..+.. +++.+..|||.+++|+....+ ...|...+++++
T Consensus 519 ~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~~---~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTEP---ESGRGGAGVAVI 568 (571)
T ss_pred EEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCCc---cccccCcceEEe
Confidence 99999999999987654 889999999999999998872 335555555443
No 8
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.3e-39 Score=322.24 Aligned_cols=347 Identities=29% Similarity=0.532 Sum_probs=285.5
Q ss_pred CceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCccee
Q 010034 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFH 80 (519)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h 80 (519)
.++|+++.+ +.|+.|.||.||.+|.+. +.|+||||- ++...+++++||..+++|+.....|+ .|.+.+.|
T Consensus 16 ~~rWrrV~~--~tGPvPrpRHGHRAVaik-ELiviFGGG-NEGiiDELHvYNTatnqWf~PavrGD------iPpgcAA~ 85 (830)
T KOG4152|consen 16 VVRWRRVQQ--STGPVPRPRHGHRAVAIK-ELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRGD------IPPGCAAF 85 (830)
T ss_pred ccceEEEec--ccCCCCCccccchheeee-eeEEEecCC-cccchhhhhhhccccceeecchhcCC------CCCchhhc
Confidence 368999984 579999999999999998 799999994 45678999999999999999887764 78888889
Q ss_pred EEEEeCCeEEEEccccC-CcCCCcEEEEECCCCeEEEEee----CCCCCCCCCccEEEEECCcEEEEEecCCCC------
Q 010034 81 IAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS----FGDLPSPRDFAAASAIGNRKIVMYGGWDGK------ 149 (519)
Q Consensus 81 ~~~~~~~~iyv~GG~~~-~~~~~dv~~yd~~t~~W~~~~~----~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~------ 149 (519)
..++.+.+||+|||+.. +.+.||+|.+-...+.|+++.+ .|.+|+||.+|+-.++++ +.|+|||...+
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseDpkn 164 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSEDPKN 164 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccCccc
Confidence 99999999999999975 6778999988888899988764 577999999999999987 99999997422
Q ss_pred ---cCCCcEEEEECCCC----cEEEeccCCCCCCcccCeeEEEe------CCEEEEEcccCCCCCccccccccccccccc
Q 010034 150 ---KWLSDVYVLDTISL----EWMQLPVTGSVPPPRCGHTATMV------EKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (519)
Q Consensus 150 ---~~~~~v~~yd~~t~----~W~~l~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd 216 (519)
.+++|+|.+++..+ -|...-..|..|.+|..|+++.+ ..++||+||.++ ..+.|+|.| |
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~L------d 236 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTL------D 236 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEE------e
Confidence 37899999998854 49998888999999999999998 248999999876 356777776 9
Q ss_pred CCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCC-------CCCcccccceeCcEEEEEcCCCeEEEccc----C
Q 010034 217 NETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT-------GGWLSRYDIYYNDTIILDRLSAQWKRLPI----G 285 (519)
Q Consensus 217 ~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~-------~~~~~~~~~~~~~v~~yd~~t~~W~~v~~----~ 285 (519)
+++-+|.++...|-.|.||.-|+++.+++++|||||.-. .....++..+.+++-++|+++..|..+-. .
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed 316 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED 316 (830)
T ss_pred cceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccc
Confidence 999999999999999999999999999999999999631 11223455688999999999999997632 1
Q ss_pred CCCCCCCcceEEEEeCCEEEEEccCCCC-------CCccceEEecCCCcccccccccCCCCCCCCCCcccccccccceec
Q 010034 286 NEPPPARAYHSMTCLGSLYLLFGGFDGK-------STFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAV 358 (519)
Q Consensus 286 ~~~p~~R~~~~~v~~~~~iyv~GG~~~~-------~~~~D~w~l~~~~d~~~~~w~~~~~~~~p~~~~~~~~~~~~~l~~ 358 (519)
...|.+|.+||++.++.++|+..|.+|- -...|+|.|+.+..+.-.+.... .......++.|
T Consensus 317 ~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~-----------rA~tNSlevsW 385 (830)
T KOG4152|consen 317 NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLV-----------RANTNSLEVSW 385 (830)
T ss_pred cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEE-----------ecccceeEEec
Confidence 1258899999999999999999998862 25667887776655544433332 23345567889
Q ss_pred CCcccceeeeeecccccCc
Q 010034 359 KESQRESSAIVELQKKLDI 377 (519)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~ 377 (519)
..-..+..|+++|++.+-.
T Consensus 386 ~~V~ta~gYlLQl~~d~p~ 404 (830)
T KOG4152|consen 386 GAVATADGYLLQLQYDIPA 404 (830)
T ss_pred hhhccccceeEEeeccccc
Confidence 9989999999999865443
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5e-38 Score=332.02 Aligned_cols=400 Identities=29% Similarity=0.429 Sum_probs=309.1
Q ss_pred CCCCCCCCCCcceEEEEECCcEEEEEcCcCCCccCCc--EEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCe
Q 010034 11 DFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSD--VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH 88 (519)
Q Consensus 11 ~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~--~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~ 88 (519)
+..+..|.+|.+|+++.++ +.+|||||........+ +|++|..+..|......+. .|.+|++|++++++++
T Consensus 52 ~~~~~~p~~R~~hs~~~~~-~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~------~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIG-NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD------EPSPRYGHSLSAVGDK 124 (482)
T ss_pred ccCCCCcchhhccceeEEC-CEEEEECCCCCCCccccceeEEeecCCcccccccccCC------CCCcccceeEEEECCe
Confidence 4457899999999999997 69999999887666665 9999999999999987764 6799999999999999
Q ss_pred EEEEccccC-CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCc-CCCcEEEEECCCCcEE
Q 010034 89 MFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWM 166 (519)
Q Consensus 89 iyv~GG~~~-~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~ 166 (519)
||+|||.+. ...+++++.||+.|.+|+.+.+.+++|.+|.+|+++++++ ++|||||.+... ..+++|+||+.+.+|.
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETSTWS 203 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeeccccccce
Confidence 999999984 5668899999999999999999999999999999999986 999999998766 8999999999999999
Q ss_pred EeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCE
Q 010034 167 QLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHY 246 (519)
Q Consensus 167 ~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~ 246 (519)
++.+.|..|.||++|+++.++++++||||.......++|+|.+ |+.+.+|..+...+..|.+|++|+.++.+.+
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l------dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~ 277 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL------DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDH 277 (482)
T ss_pred ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee------ecccceeeeccccCCCCCCcceeeeEEECCE
Confidence 9999999999999999999999999999988555566666655 9999999988888999999999999999999
Q ss_pred EEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCC-CCCCCCcceEEEEeC----CEEEEEccCCCC-CCccceE
Q 010034 247 LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN-EPPPARAYHSMTCLG----SLYLLFGGFDGK-STFGDIW 320 (519)
Q Consensus 247 iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~-~~p~~R~~~~~v~~~----~~iyv~GG~~~~-~~~~D~w 320 (519)
++++||..... ...+.++|.||..+..|..+.... ..|.+|..|+.+.+. ....++||.... ...++++
T Consensus 278 ~~l~gG~~~~~-----~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (482)
T KOG0379|consen 278 LLLFGGGTDPK-----QEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVF 352 (482)
T ss_pred EEEEcCCcccc-----cccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcc
Confidence 99999987652 015789999999999999999887 678999999988774 334455553322 2344444
Q ss_pred EecCCCcccccccccCCCCCCCCCCcccccccccceecCCcccceeeeeecccccCceeccCCCcccccCccchHHHHHH
Q 010034 321 WLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLEL 400 (519)
Q Consensus 321 ~l~~~~d~~~~~w~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (519)
.+...-.+..+.|............... +...+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~------ 385 (482)
T KOG0379|consen 353 SLQIKLLSRKNEVQEPGTRAVEKVLALF-----------------------------------------RAESS------ 385 (482)
T ss_pred cccccccccCCcccccccccchhhHhhh-----------------------------------------hcccc------
Confidence 3333333333333222000000000000 00000
Q ss_pred HHHHhcCcccCCCcchhHHHHHHHHHhhhhcCCCcccccccchhhHHHHHHHHHHHhhccc---ccCCCCCceeEEEEEe
Q 010034 401 ASRLMGAGVFSNGQVSRIQATQVLRDHWKKSTPRSIPIKELGPLLRDYQRLIARHLANLQS---TELGLPGKEAYTFYHL 477 (519)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 477 (519)
+......++..++..+.....-.+.+|+...-.|++.++........+ ....-.+....++.+.
T Consensus 386 -------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (482)
T KOG0379|consen 386 -------------AICIAELLYHERRRRNDSLKNTLQVKELSILCLDRIGLETFEKYTQESLTLFLFGGNVDLTEESSPL 452 (482)
T ss_pred -------------ccchHHhhhcchhhhcccccceecccchhhhhhhhhhhhccchhhhhhhhhhhhccccCcchhcccc
Confidence 122234556667777788888889999988888888777666543332 3345566677888999
Q ss_pred cCCccceeccCc
Q 010034 478 KNSSQMQTIHIT 489 (519)
Q Consensus 478 ~~~~~~~~~~~~ 489 (519)
+++.++...++.
T Consensus 453 ~~~~~~~~~~~~ 464 (482)
T KOG0379|consen 453 KSSSELLSNDDR 464 (482)
T ss_pred cccccccccchh
Confidence 988887774443
No 10
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.1e-37 Score=316.20 Aligned_cols=274 Identities=24% Similarity=0.377 Sum_probs=213.6
Q ss_pred cCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccC--CcCCCcEEEEECCCCeEEEEeeCCCCCCC-CCc
Q 010034 53 IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSP-RDF 129 (519)
Q Consensus 53 ~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~dv~~yd~~t~~W~~~~~~g~~P~~-r~~ 129 (519)
+....|..++..+ ..+|.||.+|++++++++|||+||... ....+++++||+.+++|+.+++.+..|.. +.+
T Consensus 4 ~~~~~W~~~~~~~-----~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~ 78 (341)
T PLN02153 4 TLQGGWIKVEQKG-----GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLG 78 (341)
T ss_pred ccCCeEEEecCCC-----CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCc
Confidence 3567899987542 246899999999999999999999854 23457999999999999998864434443 346
Q ss_pred cEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccC--CCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccc
Q 010034 130 AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT--GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (519)
Q Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (519)
|+++++++ +||||||.+....++++++||+.+++|+.++.. ...|.+|..|+++.++++|||+||.+..+. .+...
T Consensus 79 ~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-~~~~~ 156 (341)
T PLN02153 79 VRMVAVGT-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL-MKTPE 156 (341)
T ss_pred eEEEEECC-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc-cCCCc
Confidence 78888866 999999998777789999999999999998721 123889999999999999999999875431 11122
Q ss_pred cccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCc-ccccceeCcEEEEEcCCCeEEEcccCC
Q 010034 208 ALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL-SRYDIYYNDTIILDRLSAQWKRLPIGN 286 (519)
Q Consensus 208 ~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~-~~~~~~~~~v~~yd~~t~~W~~v~~~~ 286 (519)
.++.+++||+.+++|+.++..+..|.+|.+|++++.+++|||+||....... .......+++++||+.+++|++++..+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 3577899999999999998665667899999999999999999997531000 001123688999999999999998776
Q ss_pred CCCCCCcceEEEEeCCEEEEEccCCC---------CCCccceEEecCCCcccccccccCC
Q 010034 287 EPPPARAYHSMTCLGSLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTESP 337 (519)
Q Consensus 287 ~~p~~R~~~~~v~~~~~iyv~GG~~~---------~~~~~D~w~l~~~~d~~~~~w~~~~ 337 (519)
..|.+|..|++++++++||||||... ....+|+|.| |+.+++|+...
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~----d~~~~~W~~~~ 292 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL----DTETLVWEKLG 292 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEE----EcCccEEEecc
Confidence 67889999999999999999999742 1235677754 45567787664
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.6e-37 Score=315.23 Aligned_cols=278 Identities=22% Similarity=0.298 Sum_probs=215.7
Q ss_pred CCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEc--CCCcEEeeeecCCCCCCCCCC-CCcceeEEEEeCCeEEE
Q 010034 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDI--DNKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (519)
Q Consensus 15 ~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~l~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (519)
++|.+|..+++++++ ++|||+||... +++++||+ .+++|..++ ++| .+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~-~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIG-DKVYVGLGSAG----TSWYKLDLKKPSKGWQKIA---------DFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEEC-CEEEEEccccC----CeeEEEECCCCCCCceECC---------CCCCCCcccceEEEECCEEEE
Confidence 588999999888888 69999999742 67999996 578999985 567 58999999999999999
Q ss_pred EccccCCc------CCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCc---------------
Q 010034 92 FGGRFGSR------RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK--------------- 150 (519)
Q Consensus 92 ~GG~~~~~------~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~--------------- 150 (519)
+||..... .++++|+||+.+++|++++. .+|.+|.++++++..+++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99986422 47899999999999999873 46777877877743356999999986421
Q ss_pred -------------------CCCcEEEEECCCCcEEEeccCCCCCC-cccCeeEEEeCCEEEEEcccCCCCCccccccccc
Q 010034 151 -------------------WLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (519)
Q Consensus 151 -------------------~~~~v~~yd~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (519)
..+++++||+.+++|+.++ ++|. +|.+++++.++++|||+||....... ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~ 217 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLR------TA 217 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCcc------ch
Confidence 2478999999999999998 8885 68999999999999999998643311 12
Q ss_pred cccc--ccCCCCceEEecCCCCCCCCc-------ceeEEEEeCCEEEEEeccCCCCCc--------c--cccceeCcEEE
Q 010034 211 GLIE--EENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWL--------S--RYDIYYNDTII 271 (519)
Q Consensus 211 ~v~~--Yd~~t~~W~~i~~~g~~P~~r-------~~~s~~~~~~~iyv~GG~~~~~~~--------~--~~~~~~~~v~~ 271 (519)
.++. ||+++++|+.++ ++|.+| .+|++++.+++|||+||....+.. . ......+.+.+
T Consensus 218 ~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred heEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 3333 456788999998 566554 456677899999999997632100 0 00011246899
Q ss_pred EEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCC-CCccceEEec
Q 010034 272 LDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLV 323 (519)
Q Consensus 272 yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~-~~~~D~w~l~ 323 (519)
||+++++|+.+..+ |.+|..+++++++++|||+||.+.. ..++|++.+.
T Consensus 295 yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 295 YALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 99999999999875 5589999988999999999998754 4577776554
No 12
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-38 Score=337.56 Aligned_cols=241 Identities=14% Similarity=0.183 Sum_probs=212.5
Q ss_pred eeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcC-CCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 010034 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (519)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~ 81 (519)
+|..++ ++|.+|.+|++++++ +.||++||.. +...++++++||+.++.|..++ ++|.+|..++
T Consensus 283 ~W~~l~------~mp~~r~~~~~a~l~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---------~m~~~R~~~~ 346 (557)
T PHA02713 283 EYSVIS------TIPNHIINYASAIVD-NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---------PMIKNRCRFS 346 (557)
T ss_pred eEEECC------CCCccccceEEEEEC-CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---------CCcchhhcee
Confidence 688887 689999999998888 6999999975 4456789999999999998874 6899999999
Q ss_pred EEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCC------------
Q 010034 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK------------ 149 (519)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~------------ 149 (519)
+++++++||++||.++...++++++||+.+++|+.++ +||.+|..++++++++ +||++||.++.
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECC-EEEEEeCCCcccccccccccccc
Confidence 9999999999999987777889999999999999988 6999999999999865 99999998642
Q ss_pred ------cCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC-Cce
Q 010034 150 ------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-PGW 222 (519)
Q Consensus 150 ------~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t-~~W 222 (519)
...+++++|||.+++|+.++ +|+.+|..++++.++++|||+||.+.... ..+.+++|||.+ ++|
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGW 493 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCe
Confidence 13578999999999999998 99999999999999999999999864321 235689999999 899
Q ss_pred EEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccC
Q 010034 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (519)
Q Consensus 223 ~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 285 (519)
+.++ ++|.+|..+++++.+++||++||.++. ..+.+||+.+++|+.+.+.
T Consensus 494 ~~~~---~m~~~r~~~~~~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 494 ELIT---TTESRLSALHTILHDNTIMMLHCYESY----------MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eEcc---ccCcccccceeEEECCEEEEEeeecce----------eehhhcCcccccccchhhh
Confidence 9998 899999999999999999999998641 3689999999999998765
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.8e-36 Score=312.87 Aligned_cols=282 Identities=20% Similarity=0.258 Sum_probs=216.3
Q ss_pred CCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcC--CCcEEeeeecCCCCCCCCCC-CCcceeEEEEeCCeEEE
Q 010034 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (519)
Q Consensus 15 ~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (519)
++|.+|..+++++++ ++|||+||... +.+++||+. +++|..++ ++| .+|.+|++++++++|||
T Consensus 24 ~lP~~~~~~~~~~~~-~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~r~~~~~v~~~~~IYV 89 (376)
T PRK14131 24 DLPVPFKNGTGAIDN-NTVYVGLGSAG----TSWYKLDLNAPSKGWTKIA---------AFPGGPREQAVAAFIDGKLYV 89 (376)
T ss_pred CCCcCccCCeEEEEC-CEEEEEeCCCC----CeEEEEECCCCCCCeEECC---------cCCCCCcccceEEEECCEEEE
Confidence 789999988888887 69999999743 458999987 47899875 345 58999999999999999
Q ss_pred EccccC------CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCC----------------
Q 010034 92 FGGRFG------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK---------------- 149 (519)
Q Consensus 92 ~GG~~~------~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~---------------- 149 (519)
+||... ...++++|+||+.+++|+.+++ .+|.++.+|+++++.+++||++||.+..
T Consensus 90 ~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 90 FGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred EcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 999864 1346899999999999999974 3577788888877445699999997532
Q ss_pred ------------------cCCCcEEEEECCCCcEEEeccCCCCCC-cccCeeEEEeCCEEEEEcccCCCCCccccccccc
Q 010034 150 ------------------KWLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (519)
Q Consensus 150 ------------------~~~~~v~~yd~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (519)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++|||+||....+....++|.
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~-- 242 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQ-- 242 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheE--
Confidence 12478999999999999987 7885 78889999999999999997554322222222
Q ss_pred ccccccCCCCceEEecCCCCCCCCcc--------eeEEEEeCCEEEEEeccCCCCCcc--------c--ccceeCcEEEE
Q 010034 211 GLIEEENETPGWTQLKLPGQAPSSRC--------GHTITSGGHYLLLFGGHGTGGWLS--------R--YDIYYNDTIIL 272 (519)
Q Consensus 211 ~v~~Yd~~t~~W~~i~~~g~~P~~r~--------~~s~~~~~~~iyv~GG~~~~~~~~--------~--~~~~~~~v~~y 272 (519)
+.||+++++|+.++ ++|.+|. ++.+++.+++|||+||........ . .......+.+|
T Consensus 243 --~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 243 --GKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred --EEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 24688999999998 6666553 233567899999999976422000 0 00012356799
Q ss_pred EcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCC-CCccceEEecCC
Q 010034 273 DRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLVPE 325 (519)
Q Consensus 273 d~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~-~~~~D~w~l~~~ 325 (519)
|+++++|+.++.+ |.+|..++++.++++|||+||.... ...+|++.|..+
T Consensus 318 d~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 318 ALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 9999999998765 6689999999999999999997643 467888776654
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.5e-36 Score=307.59 Aligned_cols=271 Identities=19% Similarity=0.296 Sum_probs=211.7
Q ss_pred CCCcceEEEEECCcEEEEEcCcCCC----------ccCCcEEEEE-cCC-CcEEeeeecCCCCCCCCCCCCcceeEEEEe
Q 010034 18 QPRSGHSAVNIGKSKVVVFGGLVDK----------RFLSDVVVYD-IDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVAI 85 (519)
Q Consensus 18 ~~R~gh~~~~~~~~~lyv~GG~~~~----------~~~~~~~~yd-~~~-~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~ 85 (519)
..+.||.+.+++ +.|||+||.+.. ...+++++|+ +.. .+|..+. ++|.+|..++++++
T Consensus 2 ~~~~g~~~~~~~-~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---------~lp~~r~~~~~~~~ 71 (323)
T TIGR03548 2 LGVAGCYAGIIG-DYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---------QLPYEAAYGASVSV 71 (323)
T ss_pred CceeeEeeeEEC-CEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---------cCCccccceEEEEE
Confidence 357789999998 599999998642 2456899886 332 3698865 57899998989999
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEE-EEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~-~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
+++||++||..+...++++++||+.+++|+ .....+++|.+|..|+++++++ +|||+||.......+++++||+.+++
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence 999999999988777899999999999983 1122237999999999999865 99999998666668999999999999
Q ss_pred EEEeccCCCCC-CcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCC--CCCCCcceeEE-
Q 010034 165 WMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG--QAPSSRCGHTI- 240 (519)
Q Consensus 165 W~~l~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g--~~P~~r~~~s~- 240 (519)
|++++ ++| .+|..|+++.++++|||+||.+... ..++++||+.+++|+.++... ..|.++.++++
T Consensus 151 W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~ 219 (323)
T TIGR03548 151 WFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASI 219 (323)
T ss_pred eeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCCCCceeccceeEE
Confidence 99998 677 4799999999999999999976432 245688999999999987421 23444444444
Q ss_pred EEeCCEEEEEeccCCCCCcc-------------------------cccceeCcEEEEEcCCCeEEEcccCCCCCCCCcce
Q 010034 241 TSGGHYLLLFGGHGTGGWLS-------------------------RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYH 295 (519)
Q Consensus 241 ~~~~~~iyv~GG~~~~~~~~-------------------------~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~ 295 (519)
++.+++|||+||.+...... ..-.+.+++++||+.+++|+.++.+ +..+|..+
T Consensus 220 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~ 297 (323)
T TIGR03548 220 KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGA 297 (323)
T ss_pred EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCch
Confidence 44678999999986421000 0001347899999999999999864 33589999
Q ss_pred EEEEeCCEEEEEccCCC
Q 010034 296 SMTCLGSLYLLFGGFDG 312 (519)
Q Consensus 296 ~~v~~~~~iyv~GG~~~ 312 (519)
+++.++++||++||...
T Consensus 298 ~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 298 ALLLTGNNIFSINGELK 314 (323)
T ss_pred heEEECCEEEEEecccc
Confidence 99999999999999653
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=277.94 Aligned_cols=241 Identities=28% Similarity=0.490 Sum_probs=210.9
Q ss_pred ceeEEceeCC----CCC---CCCCCCcceEEEEECCcEEEEEcCcCC-CccCCcEEEEEcCCCcEEeeeecCCCCCCCCC
Q 010034 2 HYWVRASSSD----FGG---TVPQPRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVG 73 (519)
Q Consensus 2 ~~W~~~~~~~----~~g---~~P~~R~gh~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~ 73 (519)
++|+++.+.. ..+ ..|-+|.||+.|.+. +++||+||.++ ....+-++.||++++.|+.....|. .
T Consensus 54 ~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~------v 126 (392)
T KOG4693|consen 54 YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF------V 126 (392)
T ss_pred eeEEecCcccccccccCCCCccchhhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccccccccceeee------c
Confidence 5799887621 112 367789999999998 59999999986 6789999999999999999887765 7
Q ss_pred CCCcceeEEEEeCCeEEEEccccC--CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCC--
Q 010034 74 PGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-- 149 (519)
Q Consensus 74 p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~-- 149 (519)
|.+|.+|++|++++.+|||||+.. ....+|++++|..|.+|+.+.+.+++|.-|.+|++++++ +.+|||||+...
T Consensus 127 PgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 127 PGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESG 205 (392)
T ss_pred CCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCC
Confidence 999999999999999999999965 456789999999999999999999999999999999997 599999998532
Q ss_pred -------cCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCce
Q 010034 150 -------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (519)
Q Consensus 150 -------~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W 222 (519)
.+.+.+-.+|..|..|...++.+-.|..|..|++...|+++|+|||+.+.-.. .++++++|||.+..|
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMW 280 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchh
Confidence 35677888999999999998888889999999999999999999999874321 356677789999999
Q ss_pred EEecCCCCCCCCcceeEEEEeCCEEEEEeccCC
Q 010034 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (519)
Q Consensus 223 ~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~ 255 (519)
..+...|.-|.+|..+++++.++++|+|||.+.
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999999999999653
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=316.91 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=221.3
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCc-CCCcEEEEECC
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDTD 110 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~-~~~dv~~yd~~ 110 (519)
.+++.||.. .....+..|+...++|..+. +.| .+.+|++++++++||++||..... ..+++++||+.
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 319 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTII---------DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK 319 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhccccc---------Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCC
Confidence 455556543 23455667888889998874 123 245678999999999999997643 46789999999
Q ss_pred CCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEE
Q 010034 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (519)
Q Consensus 111 t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~l 190 (519)
+++|..++ ++|.+|.+|+++++++ +||++||.+.....+++++||+.+++|+.++ ++|.+|.+|+++.++++|
T Consensus 320 ~~~W~~~~---~~~~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 320 TKSWNKVP---ELIYPRKNPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred CCeeeECC---CCCcccccceEEEECC-EEEEEeCCCCCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEE
Confidence 99999887 6999999999999865 9999999987777899999999999999998 899999999999999999
Q ss_pred EEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEE
Q 010034 191 LIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (519)
Q Consensus 191 yv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~ 270 (519)
||+||...... .++.+++||+.+++|+.++ ++|.+|.+|++++.+++||++||.+.... ....++++
T Consensus 393 Yv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~v~ 459 (534)
T PHA03098 393 YVIGGISKNDE------LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN----IKVYNIVE 459 (534)
T ss_pred EEECCcCCCCc------ccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC----CcccceEE
Confidence 99999765432 2577899999999999988 78999999999999999999999865321 11356799
Q ss_pred EEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCCCCccceEEecCCCcccccccccCCC
Q 010034 271 ILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (519)
Q Consensus 271 ~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~~~~D~w~l~~~~d~~~~~w~~~~~ 338 (519)
+||+.+++|+.++.+ |.+|..++++.++++|||+||.++....++++ .||+.+++|...+.
T Consensus 460 ~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~----~yd~~~~~W~~~~~ 520 (534)
T PHA03098 460 SYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEIE----VYDDKTNTWTLFCK 520 (534)
T ss_pred EecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCcccceeE----EEeCCCCEEEecCC
Confidence 999999999999875 55899999999999999999998766566754 56778889987754
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=312.67 Aligned_cols=235 Identities=18% Similarity=0.252 Sum_probs=203.0
Q ss_pred CcceEEEEECCcEEEEEcCcCCC-ccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCC
Q 010034 20 RSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (519)
Q Consensus 20 R~gh~~~~~~~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~ 98 (519)
+..|++++++ +.||++||.... ...+++++||+.+++|..++ ++|.+|.+|++++++++||++||....
T Consensus 285 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~R~~~~~~~~~~~lyv~GG~~~~ 354 (534)
T PHA03098 285 VYCFGSVVLN-NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---------ELIYPRKNPGVTVFNNRIYVIGGIYNS 354 (534)
T ss_pred cccceEEEEC-CEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 4456777777 699999998753 35679999999999998874 578899999999999999999999877
Q ss_pred cCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCC-CcCCCcEEEEECCCCcEEEeccCCCCCCc
Q 010034 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (519)
Q Consensus 99 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~p~~ 177 (519)
...+++++||+.+++|+.++ ++|.+|.+|+++++++ +||++||... ...++++++||+.+++|+.++ ++|.+
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 427 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPIS 427 (534)
T ss_pred EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCcc
Confidence 77889999999999999987 6999999999988865 9999999753 345789999999999999998 89999
Q ss_pred ccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCC
Q 010034 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (519)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~ 257 (519)
|.+|+++.++++|||+||.+.... ...++.+++||+.+++|+.++ .+|.+|..+++++.+++||++||.....
T Consensus 428 r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 428 HYGGCAIYHDGKIYVIGGISYIDN----IKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred ccCceEEEECCEEEEECCccCCCC----CcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCc
Confidence 999999999999999999865331 112456899999999999998 7888999999999999999999987543
Q ss_pred CcccccceeCcEEEEEcCCCeEEEcccC
Q 010034 258 WLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (519)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 285 (519)
..+++++||+.+++|+.++..
T Consensus 501 -------~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 501 -------YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred -------ccceeEEEeCCCCEEEecCCC
Confidence 468999999999999998764
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=300.56 Aligned_cols=250 Identities=41% Similarity=0.705 Sum_probs=225.1
Q ss_pred CCCCCcceeEEEEeCCeEEEEccccCCcCCCc--EEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCC-
Q 010034 72 VGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD--FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG- 148 (519)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~d--v~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~- 148 (519)
..|.+|++|+++.+++++|||||........+ +|++|..+..|....+.+..|.+|.+|.++++++ +||+|||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECC-eEEEEccccCC
Confidence 57999999999999999999999987666555 9999999999999999999999999999999986 9999999984
Q ss_pred CcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCC
Q 010034 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP 228 (519)
Q Consensus 149 ~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~ 228 (519)
...+++++.||+.|++|+.+.+.+..|.+|.+|+++.+++++|||||.+..+. .++.+++||+.+.+|.++.+.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDTQ 208 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceecccC
Confidence 56789999999999999999999999999999999999999999999987765 356677789999999999999
Q ss_pred CCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEc
Q 010034 229 GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (519)
Q Consensus 229 g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~G 308 (519)
|..|.||.+|++++++++++|+||.... +.+++|+|.+|+.+..|..+...+..|.+|++|+++..+++++|+|
T Consensus 209 g~~P~pR~gH~~~~~~~~~~v~gG~~~~------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGNKLLVFGGGDDG------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFG 282 (482)
T ss_pred CCCCCCCCCceEEEECCeEEEEeccccC------CceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEc
Confidence 9999999999999999999999998733 2599999999999999999998888999999999999999999999
Q ss_pred cCCCC--CCccceEEecCCCcccccccccCCC
Q 010034 309 GFDGK--STFGDIWWLVPEEDPIAKRYTESPP 338 (519)
Q Consensus 309 G~~~~--~~~~D~w~l~~~~d~~~~~w~~~~~ 338 (519)
|.... ..+.|+|.|+.. +..|.....
T Consensus 283 G~~~~~~~~l~~~~~l~~~----~~~w~~~~~ 310 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLE----TLVWSKVES 310 (482)
T ss_pred CCccccccccccccccccc----ccceeeeec
Confidence 98874 268898877766 666766543
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.3e-33 Score=295.19 Aligned_cols=214 Identities=19% Similarity=0.286 Sum_probs=187.8
Q ss_pred eEEEE-ECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCC
Q 010034 23 HSAVN-IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (519)
Q Consensus 23 h~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (519)
|+++. ++ +.||++||.++....+.+++||+.+++|..++ ++|.+|..+++++++++||++||..+.
T Consensus 264 ~~~~~~~~-~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---------~m~~~r~~~~~v~~~~~iYviGG~~~~--- 330 (480)
T PHA02790 264 MCTSTHVG-EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---------PMNSPRLYASGVPANNKLYVVGGLPNP--- 330 (480)
T ss_pred CcceEEEC-CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---------CCCchhhcceEEEECCEEEEECCcCCC---
Confidence 44344 55 69999999877777889999999999999985 678999999999999999999997542
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCe
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~ 181 (519)
+++++||+.+++|..++ +||.+|..|+++++++ +||++||.++. .+.+++|||.+++|+.++ ++|.+|.+|
T Consensus 331 ~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~ 401 (480)
T PHA02790 331 TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKS 401 (480)
T ss_pred CceEEEECCCCeEEECC---CCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccc
Confidence 56999999999999998 6999999999999865 99999998643 367999999999999998 899999999
Q ss_pred eEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCccc
Q 010034 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSR 261 (519)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~ 261 (519)
+++.++++|||+||. +++|||++++|+.++ ++|.+|..+++++.+++||++||.+...
T Consensus 402 ~~~~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~---- 459 (480)
T PHA02790 402 CALVFGRRLFLVGRN---------------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGS---- 459 (480)
T ss_pred eEEEECCEEEEECCc---------------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCc----
Confidence 999999999999983 356899999999998 7899999999999999999999986432
Q ss_pred ccceeCcEEEEEcCCCeEEEcc
Q 010034 262 YDIYYNDTIILDRLSAQWKRLP 283 (519)
Q Consensus 262 ~~~~~~~v~~yd~~t~~W~~v~ 283 (519)
..+.+++||+.+++|+...
T Consensus 460 ---~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 460 ---YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ---ccceEEEEECCCCeEEecC
Confidence 4578999999999998653
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.4e-32 Score=278.62 Aligned_cols=235 Identities=19% Similarity=0.269 Sum_probs=184.5
Q ss_pred ceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEe-eeecCCCCCCCCCCCCccee
Q 010034 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQ-PECTGNGSNGQVGPGPRAFH 80 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-l~~~~~~~~~~~~p~~R~~h 80 (519)
++|.++. ++|.+|..|+++.++ +.||++||..+...++++++||+.+++|.. ... .+++|.+|..|
T Consensus 51 ~~W~~~~------~lp~~r~~~~~~~~~-~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~------~~~lp~~~~~~ 117 (323)
T TIGR03548 51 LKWVKDG------QLPYEAAYGASVSVE-NGIYYIGGSNSSERFSSVYRITLDESKEELICET------IGNLPFTFENG 117 (323)
T ss_pred eeEEEcc------cCCccccceEEEEEC-CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeE------cCCCCcCccCc
Confidence 3688876 689999888888887 699999999887788999999999999831 111 23689999999
Q ss_pred EEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC-CCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEE
Q 010034 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD 159 (519)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 159 (519)
++++++++|||+||.......+++++||+.+++|++++ ++| .+|..|+++++++ +|||+||.++.. ..++++||
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-~~~~~~yd 192 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQN-ELYVFGGGSNIA-YTDGYKYS 192 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECC-EEEEEcCCCCcc-ccceEEEe
Confidence 99999999999999866666899999999999999997 476 4788888888865 999999987543 46789999
Q ss_pred CCCCcEEEeccCC--CCCCcccCeeEEE-eCCEEEEEcccCCCCCc-----c--------------------cccccccc
Q 010034 160 TISLEWMQLPVTG--SVPPPRCGHTATM-VEKRLLIYGGRGGGGPI-----M--------------------GDLWALKG 211 (519)
Q Consensus 160 ~~t~~W~~l~~~~--~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~-----~--------------------~d~~~l~~ 211 (519)
+.+++|+.++... ..|.++.+++++. .+++|||+||.+..... . ......+.
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 9999999997321 2344444555444 47899999998642100 0 00001257
Q ss_pred cccccCCCCceEEecCCCCCC-CCcceeEEEEeCCEEEEEeccCCCC
Q 010034 212 LIEEENETPGWTQLKLPGQAP-SSRCGHTITSGGHYLLLFGGHGTGG 257 (519)
Q Consensus 212 v~~Yd~~t~~W~~i~~~g~~P-~~r~~~s~~~~~~~iyv~GG~~~~~ 257 (519)
+++||+.+++|+.+. ++| .+|.++++++.+++||++||....+
T Consensus 273 v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 273 ILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred EEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEeccccCC
Confidence 999999999999998 565 5899999999999999999976544
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=288.18 Aligned_cols=210 Identities=16% Similarity=0.233 Sum_probs=184.2
Q ss_pred EEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCC
Q 010034 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (519)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (519)
+..++.||++||.++....+++++||+.+++|..++ +||.+|..++++++++ +||++||.++. +++++||+.+
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~ydp~~ 340 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERWFHGD 340 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECC-EEEEECCcCCC---CceEEEECCC
Confidence 458999999999877667788999999999999998 6999999999998865 99999998642 6799999999
Q ss_pred CcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEE
Q 010034 163 LEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS 242 (519)
Q Consensus 163 ~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~ 242 (519)
++|+.++ ++|.+|.+|+++.++++||++||.... .+.+++|||.+++|+.++ ++|.+|.+|++++
T Consensus 341 n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~ 405 (480)
T PHA02790 341 AAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---------DTTTEYLLPNHDQWQFGP---STYYPHYKSCALV 405 (480)
T ss_pred CeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---------CccEEEEeCCCCEEEeCC---CCCCccccceEEE
Confidence 9999998 999999999999999999999997532 256889999999999998 8899999999999
Q ss_pred eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCCCCccceEEe
Q 010034 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWL 322 (519)
Q Consensus 243 ~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~~~~D~w~l 322 (519)
.+++||++||. +.+||+++++|+.++++ |.+|..+++++++++|||+||.++....+.
T Consensus 406 ~~~~IYv~GG~---------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~---- 463 (480)
T PHA02790 406 FGRRLFLVGRN---------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDT---- 463 (480)
T ss_pred ECCEEEEECCc---------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccce----
Confidence 99999999983 46899999999999875 558999999999999999999875544444
Q ss_pred cCCCcccccccccC
Q 010034 323 VPEEDPIAKRYTES 336 (519)
Q Consensus 323 ~~~~d~~~~~w~~~ 336 (519)
.+.|||.+++|+..
T Consensus 464 ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 IEVYNNRTYSWNIW 477 (480)
T ss_pred EEEEECCCCeEEec
Confidence 56788999999754
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=266.53 Aligned_cols=256 Identities=29% Similarity=0.554 Sum_probs=212.3
Q ss_pred CCCCCCCcceEEEEE-CCcEEEEEcCcC--C--CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeC-C
Q 010034 14 GTVPQPRSGHSAVNI-GKSKVVVFGGLV--D--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-C 87 (519)
Q Consensus 14 g~~P~~R~gh~~~~~-~~~~lyv~GG~~--~--~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~ 87 (519)
-++|.||.+.++++- .++-|++|||.- + ....+|+|+||+.++.|+.+. .|+.|.||+.|.+|++. +
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~-------spn~P~pRsshq~va~~s~ 133 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVV-------SPNAPPPRSSHQAVAVPSN 133 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEec-------cCCCcCCCccceeEEeccC
Confidence 378999999999883 335799999953 2 246799999999999999986 45789999999999986 8
Q ss_pred eEEEEccccCC------cCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCC----cCCCcEEE
Q 010034 88 HMFIFGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYV 157 (519)
Q Consensus 88 ~iyv~GG~~~~------~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~ 157 (519)
.+|+|||...+ -.+.|+|+||..+++|+++...| .|.+|.+|-|++..+ +|++|||+... .++|+||+
T Consensus 134 ~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~ 211 (521)
T KOG1230|consen 134 ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYA 211 (521)
T ss_pred eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEE
Confidence 99999997432 23789999999999999998754 899999999999966 99999998432 47899999
Q ss_pred EECCCCcEEEeccCCCCCCcccCeeEEEe-CCEEEEEcccCC--------CCCcccccccccccccccCCC-----CceE
Q 010034 158 LDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGG--------GGPIMGDLWALKGLIEEENET-----PGWT 223 (519)
Q Consensus 158 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~--------~~~~~~d~~~l~~v~~Yd~~t-----~~W~ 223 (519)
||+.|.+|+++.++|..|.||+||++.+. .+.|||.||++. .+...+|+|.| ++.. -.|+
T Consensus 212 FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L------~p~~~~~dKw~W~ 285 (521)
T KOG1230|consen 212 FDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLL------KPEDGREDKWVWT 285 (521)
T ss_pred EeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeee------cCCcCCCcceeEe
Confidence 99999999999998889999999999998 899999999874 33455666665 6666 6899
Q ss_pred EecCCCCCCCCcceeEEEEe-CCEEEEEeccCCCC--CcccccceeCcEEEEEcCCCeEEEccc
Q 010034 224 QLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGG--WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 224 ~i~~~g~~P~~r~~~s~~~~-~~~iyv~GG~~~~~--~~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
++...|..|.||.++++++. +++-+.|||.-+-. ...-...+.||+|.||+..++|.....
T Consensus 286 kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 286 KVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred eccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 99988899999999999985 56999999975411 111223588999999999999987643
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.5e-31 Score=273.68 Aligned_cols=241 Identities=24% Similarity=0.334 Sum_probs=186.8
Q ss_pred ceeEEceeCCCCCCCC-CCCcceEEEEECCcEEEEEcCcCCC------ccCCcEEEEEcCCCcEEeeeecCCCCCCCCCC
Q 010034 2 HYWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVDK------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGP 74 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P-~~R~gh~~~~~~~~~lyv~GG~~~~------~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p 74 (519)
.+|++++ ++| .+|.+|+++.++ +.|||+||.... ..++++|+||+.+++|+.++. ++|
T Consensus 41 ~~W~~l~------~~p~~~R~~~~~~~~~-~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--------~~p 105 (346)
T TIGR03547 41 KGWQKIA------DFPGGPRNQAVAAAID-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--------RSP 105 (346)
T ss_pred CCceECC------CCCCCCcccceEEEEC-CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--------CCC
Confidence 3688887 577 589999999888 699999998532 257899999999999999851 357
Q ss_pred CCcceeEEE-EeCCeEEEEccccCCc----------------------------------CCCcEEEEECCCCeEEEEee
Q 010034 75 GPRAFHIAV-AIDCHMFIFGGRFGSR----------------------------------RLGDFWVLDTDIWQWSELTS 119 (519)
Q Consensus 75 ~~R~~h~~~-~~~~~iyv~GG~~~~~----------------------------------~~~dv~~yd~~t~~W~~~~~ 119 (519)
.+|.+|+++ +++++||++||.++.. .++++++||+.+++|+.++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~- 184 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG- 184 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc-
Confidence 778888877 6899999999986421 1478999999999999997
Q ss_pred CCCCCC-CCCccEEEEECCcEEEEEecCCCCc-CCCcEEEEE--CCCCcEEEeccCCCCCCcc-------cCeeEEEeCC
Q 010034 120 FGDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLD--TISLEWMQLPVTGSVPPPR-------CGHTATMVEK 188 (519)
Q Consensus 120 ~g~~P~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd--~~t~~W~~l~~~~~~p~~r-------~~~~~~~~~~ 188 (519)
+||. +|..++++++++ +|||+||..... ...+++.|+ +.+++|+.++ +||.+| .+|+++.+++
T Consensus 185 --~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 185 --ENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNG 258 (346)
T ss_pred --cCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECC
Confidence 5886 688888888865 999999986433 234566665 5778999998 777665 3566778899
Q ss_pred EEEEEcccCCCCCc---------cc-ccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCC
Q 010034 189 RLLIYGGRGGGGPI---------MG-DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (519)
Q Consensus 189 ~lyv~GG~~~~~~~---------~~-d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~ 258 (519)
+|||+||....... .. ....++.+++||+++++|+.+. ++|.+|..+++++.+++|||+||.+..+
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~- 334 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGG- 334 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCC-
Confidence 99999998632110 00 0012356899999999999998 7899999998888999999999987654
Q ss_pred cccccceeCcEEEEE
Q 010034 259 LSRYDIYYNDTIILD 273 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd 273 (519)
...++|+.|-
T Consensus 335 -----~~~~~v~~~~ 344 (346)
T TIGR03547 335 -----KAVTDVYLLS 344 (346)
T ss_pred -----CEeeeEEEEE
Confidence 4677887664
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.2e-31 Score=274.99 Aligned_cols=248 Identities=24% Similarity=0.298 Sum_probs=191.1
Q ss_pred eeEEceeCCCCCCCC-CCCcceEEEEECCcEEEEEcCcCC------CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 010034 3 YWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVD------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (519)
Q Consensus 3 ~W~~~~~~~~~g~~P-~~R~gh~~~~~~~~~lyv~GG~~~------~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~ 75 (519)
.|.+++ ++| .+|.+|+++.++ +.|||+||... ...++++|+||+.+++|+.++. ..|.
T Consensus 63 ~W~~l~------~~p~~~r~~~~~v~~~-~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--------~~p~ 127 (376)
T PRK14131 63 GWTKIA------AFPGGPREQAVAAFID-GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--------RSPV 127 (376)
T ss_pred CeEECC------cCCCCCcccceEEEEC-CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--------CCCC
Confidence 588776 455 489999988888 69999999864 2357899999999999999852 2467
Q ss_pred CcceeEEEE-eCCeEEEEccccCC----------------------------------cCCCcEEEEECCCCeEEEEeeC
Q 010034 76 PRAFHIAVA-IDCHMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSF 120 (519)
Q Consensus 76 ~R~~h~~~~-~~~~iyv~GG~~~~----------------------------------~~~~dv~~yd~~t~~W~~~~~~ 120 (519)
+|.+|++++ .+++||++||.... ...+++++||+.+++|+.++
T Consensus 128 ~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~-- 205 (376)
T PRK14131 128 GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG-- 205 (376)
T ss_pred cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC--
Confidence 778888877 79999999997531 12478999999999999987
Q ss_pred CCCCC-CCCccEEEEECCcEEEEEecCCCCc-CCCcEE--EEECCCCcEEEeccCCCCCCcccC--------eeEEEeCC
Q 010034 121 GDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVY--VLDTISLEWMQLPVTGSVPPPRCG--------HTATMVEK 188 (519)
Q Consensus 121 g~~P~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~--~yd~~t~~W~~l~~~~~~p~~r~~--------~~~~~~~~ 188 (519)
++|. +|.+|+++++++ +|||+||..... ...+++ .||+.+++|+.++ ++|.+|.+ +.++.+++
T Consensus 206 -~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 206 -ESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred -cCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECC
Confidence 5885 777888877765 999999975332 234444 4577899999998 77777642 33566799
Q ss_pred EEEEEcccCCCCCcc----------cccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCC
Q 010034 189 RLLIYGGRGGGGPIM----------GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (519)
Q Consensus 189 ~lyv~GG~~~~~~~~----------~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~ 258 (519)
+|||+||.+...... ..+-....+++||+++++|+.+. .+|.+|..+++++.+++|||+||....+
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~- 356 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGG- 356 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCC-
Confidence 999999986432100 00111235789999999999987 8999999999999999999999976543
Q ss_pred cccccceeCcEEEEEcCCCeEEE
Q 010034 259 LSRYDIYYNDTIILDRLSAQWKR 281 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd~~t~~W~~ 281 (519)
...++|++|++..++++.
T Consensus 357 -----~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 357 -----KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred -----cEeeeEEEEEEcCCEEEE
Confidence 367899999999888764
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.98 E-value=3.3e-31 Score=257.56 Aligned_cols=257 Identities=23% Similarity=0.441 Sum_probs=210.5
Q ss_pred CCCCCCcceeEEEEe--CCeEEEEcccc--C--CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEe
Q 010034 71 QVGPGPRAFHIAVAI--DCHMFIFGGRF--G--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYG 144 (519)
Q Consensus 71 ~~~p~~R~~h~~~~~--~~~iyv~GG~~--~--~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~G 144 (519)
-++|.||...++++. .+.+++|||.- + ...++|+|+||+.+++|+++.+ .+.|.||..|+++++..+.+|+||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEec
Confidence 367999999988876 46899999963 3 2348999999999999999875 257899999999999877999999
Q ss_pred cCCC--C----cCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCC
Q 010034 145 GWDG--K----KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE 218 (519)
Q Consensus 145 G~~~--~----~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~ 218 (519)
|--. . -...++|.||+.+++|+++...| .|.||+||.|+...++|+||||+.... .+...+|++++||++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~n---r~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSN---RDYIYYNDVYAFDLD 215 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCC---CceEEeeeeEEEecc
Confidence 9521 1 24689999999999999998654 799999999999999999999998753 455567888888999
Q ss_pred CCceEEecCCCCCCCCcceeEEEEe-CCEEEEEeccCCCCCcc--cccceeCcEEEEEcCC-----CeEEEcccCCCCCC
Q 010034 219 TPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLS--RYDIYYNDTIILDRLS-----AQWKRLPIGNEPPP 290 (519)
Q Consensus 219 t~~W~~i~~~g~~P~~r~~~s~~~~-~~~iyv~GG~~~~~~~~--~~~~~~~~v~~yd~~t-----~~W~~v~~~~~~p~ 290 (519)
+-+|+.+.++|..|.||.+|.+.+. .+.|||.||++...... ......+|+|.+++++ ..|.++.+.+..|.
T Consensus 216 tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs 295 (521)
T KOG1230|consen 216 TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS 295 (521)
T ss_pred ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC
Confidence 9999999998889999999999987 89999999987532111 1235778999999988 78999999999999
Q ss_pred CCcceEEEEe-CCEEEEEccCCC---------CCCccceEEecCCCcccccccccC
Q 010034 291 ARAYHSMTCL-GSLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTES 336 (519)
Q Consensus 291 ~R~~~~~v~~-~~~iyv~GG~~~---------~~~~~D~w~l~~~~d~~~~~w~~~ 336 (519)
||.++++++. +++-+.|||... ...++|++.|++ ..++|+..
T Consensus 296 pRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdl----t~nrW~~~ 347 (521)
T KOG1230|consen 296 PRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDL----TRNRWSEG 347 (521)
T ss_pred CCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheec----ccchhhHh
Confidence 9999999887 469999999654 125677665444 45566543
No 26
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.97 E-value=7.1e-32 Score=267.10 Aligned_cols=376 Identities=21% Similarity=0.296 Sum_probs=269.6
Q ss_pred ceeEEceeCCCCC----CCCCCCcceEEEE-ECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 010034 2 HYWVRASSSDFGG----TVPQPRSGHSAVN-IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (519)
Q Consensus 2 ~~W~~~~~~~~~g----~~P~~R~gh~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~ 76 (519)
.+|.++..++..| ..|..|+||+||. .+++.||++|||++.+.+.|+|.|+...+.|+.+...++ .|.+
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~------~PG~ 312 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE------GPGA 312 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC------CCcc
Confidence 4799998877544 5899999999999 466799999999999999999999999999999976553 7999
Q ss_pred cceeEEEEeCC--eEEEEccccCC------cCCCcEEEEECCCCeEEEEee---CCCCCCCCCccEEEEECC-cEEEEEe
Q 010034 77 RAFHIAVAIDC--HMFIFGGRFGS------RRLGDFWVLDTDIWQWSELTS---FGDLPSPRDFAAASAIGN-RKIVMYG 144 (519)
Q Consensus 77 R~~h~~~~~~~--~iyv~GG~~~~------~~~~dv~~yd~~t~~W~~~~~---~g~~P~~r~~~~~~~~~~-~~iyv~G 144 (519)
|++|-|+..-. ++|++|-+-+. ..-+|+|+||..++.|..+.. ....|...+.|+|++.++ +-|||||
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999998755 99999988542 235789999999999999864 235789999999999976 2499999
Q ss_pred cCC---CCcCCCcEEEEECCCCcEEEeccCCC-------CCCcccCeeEEEe--CCEEEEEcccCCCCCccccccccccc
Q 010034 145 GWD---GKKWLSDVYVLDTISLEWMQLPVTGS-------VPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGL 212 (519)
Q Consensus 145 G~~---~~~~~~~v~~yd~~t~~W~~l~~~~~-------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~v 212 (519)
|+. ....+..+|.||.....|..+...-. ....|.+|+|-.+ ++.+|++||.+... .++.+
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-------El~L~ 465 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-------ELNLF 465 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------EEeeh
Confidence 974 23568899999999999999874321 1235888888776 56899999987765 46777
Q ss_pred ccccCCCCceEEec-----CCCCCCCCcceeEEEE--eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccC
Q 010034 213 IEEENETPGWTQLK-----LPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (519)
Q Consensus 213 ~~Yd~~t~~W~~i~-----~~g~~P~~r~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 285 (519)
+.||+....-..+. .....|++.+...+.. .++.|.+.-|.+... ..+.....|++|+|++.++.|.++...
T Consensus 466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~-~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDK-EKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhc-cCccccccCcEEEEEecccchhhHhhh
Confidence 78876654443332 1112344444333332 567888888887654 223345789999999999999987542
Q ss_pred CC---------------------CCCCCcceEEEEe--CCEEEEEccCCCCC-----CccceEEecCCCcccccccccCC
Q 010034 286 NE---------------------PPPARAYHSMTCL--GSLYLLFGGFDGKS-----TFGDIWWLVPEEDPIAKRYTESP 337 (519)
Q Consensus 286 ~~---------------------~p~~R~~~~~v~~--~~~iyv~GG~~~~~-----~~~D~w~l~~~~d~~~~~w~~~~ 337 (519)
.. .|++|++|+.++. ..-+|++||+.+.. .++|+|.+++.........+..
T Consensus 545 ~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~rp~~~~~l~~~- 623 (723)
T KOG2437|consen 545 DQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICRPSKDYLLRHC- 623 (723)
T ss_pred HHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcccchhhhhhcc-
Confidence 11 2778998887743 57799999998754 6788998888744333333333
Q ss_pred CCCCCCCCcccccccccceecCCcccceeeeeecccccCceeccCCCcccccCccchHHHHHHHHHHhcCcc
Q 010034 338 PKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLELASRLMGAGV 409 (519)
Q Consensus 338 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (519)
+...++.++.+++-.....+..+ +|+.+ -...++. +...++|++.+|..|+...+
T Consensus 624 -------~~~~~~HrF~E~~~~~~l~a~~y---lq~~~--~~~~D~s-----~~~~~~e~~lla~~l~~sG~ 678 (723)
T KOG2437|consen 624 -------KYLIRKHRFEEKAQVDPLSALKY---LQNDL--YITVDHS-----DPEETKEFQLLASALFKSGS 678 (723)
T ss_pred -------hhhhHHHHHHHHhhhhhHHHhHh---hhhcc--eeccccC-----chhhhHHHHHHHHHHHhcCC
Confidence 22233344555555555444433 33322 2222344 44556899999998886433
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.6e-28 Score=241.25 Aligned_cols=242 Identities=26% Similarity=0.411 Sum_probs=203.3
Q ss_pred CCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEE
Q 010034 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA 134 (519)
Q Consensus 55 ~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~ 134 (519)
.-+|+++.... .+.|.||.+|-++++..-|.||||-+. ...+.+++||..+++|..-...|+.|.+...|+.+.
T Consensus 16 ~~rWrrV~~~t-----GPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 16 VVRWRRVQQST-----GPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred ccceEEEeccc-----CCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 35799987663 367899999999999999999999765 456889999999999999888899999999999988
Q ss_pred ECCcEEEEEecCCC-CcCCCcEEEEECCCCcEEEecc----CCCCCCcccCeeEEEeCCEEEEEcccCCCCC--cccccc
Q 010034 135 IGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPV----TGSVPPPRCGHTATMVEKRLLIYGGRGGGGP--IMGDLW 207 (519)
Q Consensus 135 ~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~----~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~d~~ 207 (519)
.+. +||+|||... ..+.|++|.+....-.|+++.+ .|..|.||-+|+...++++.|+|||...+.. ..|-..
T Consensus 90 dGt-rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 90 DGT-RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cCc-eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 877 9999999864 4688999888888888998864 4778999999999999999999999754321 112223
Q ss_pred cccccccccCCC----CceEEecCCCCCCCCcceeEEEEe------CCEEEEEeccCCCCCcccccceeCcEEEEEcCCC
Q 010034 208 ALKGLIEEENET----PGWTQLKLPGQAPSSRCGHTITSG------GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (519)
Q Consensus 208 ~l~~v~~Yd~~t----~~W~~i~~~g~~P~~r~~~s~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~ 277 (519)
.||+++..++.- -.|......|..|.+|-.|+++++ ..++||+||+.+. .+.|+|.+|+++.
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--------RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--------RLGDLWTLDLDTL 240 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--------cccceeEEeccee
Confidence 455555555542 369999888999999999999985 3489999999874 6899999999999
Q ss_pred eEEEcccCCCCCCCCcceEEEEeCCEEEEEccCC
Q 010034 278 QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (519)
Q Consensus 278 ~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~ 311 (519)
+|.+....+.+|.||.-|+++.+++++|||||+-
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEeccee
Confidence 9999988888999999999999999999999974
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=6.7e-17 Score=156.40 Aligned_cols=274 Identities=21% Similarity=0.309 Sum_probs=196.7
Q ss_pred CCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEE
Q 010034 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (519)
Q Consensus 15 ~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~ 92 (519)
..|++-.+-+...+++ .+||-=|..+ ..++..|+.. ..|+.+... +-.+|....+++++++||+|
T Consensus 32 dlPvg~KnG~Ga~ig~-~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~F--------pG~~rnqa~~a~~~~kLyvF 98 (381)
T COG3055 32 DLPVGFKNGAGALIGD-TVYVGLGSAG----TAFYVLDLKKPGKGWTKIADF--------PGGARNQAVAAVIGGKLYVF 98 (381)
T ss_pred CCCccccccccceecc-eEEEEeccCC----ccceehhhhcCCCCceEcccC--------CCcccccchheeeCCeEEEe
Confidence 5677765557777886 8888666333 4577888764 589999754 45689999999999999999
Q ss_pred ccccCC-----cCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCC-------------------
Q 010034 93 GGRFGS-----RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG------------------- 148 (519)
Q Consensus 93 GG~~~~-----~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~------------------- 148 (519)
||.... ..++|+|+||+.+++|..+.+ ..|....++.++...+.+||++||.+.
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 998542 347899999999999999986 567778888888887779999999642
Q ss_pred ---------------CcCCCcEEEEECCCCcEEEeccCCCCC-CcccCeeEEEeCCEEEEEcccCCCCCccccccccccc
Q 010034 149 ---------------KKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGL 212 (519)
Q Consensus 149 ---------------~~~~~~v~~yd~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v 212 (519)
..+...+..|+|.+++|+.+- ..| .++++.+.+.-++++.++-|.-..+-+. ..+
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt------~~~ 247 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRT------AEV 247 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccc------cce
Confidence 013467899999999999885 555 4677755555578899999876655322 223
Q ss_pred ccc--cCCCCceEEecCCCCCCCCcc-------eeEEEEeCCEEEEEeccCCCCCcc------------cccceeCcEEE
Q 010034 213 IEE--ENETPGWTQLKLPGQAPSSRC-------GHTITSGGHYLLLFGGHGTGGWLS------------RYDIYYNDTII 271 (519)
Q Consensus 213 ~~Y--d~~t~~W~~i~~~g~~P~~r~-------~~s~~~~~~~iyv~GG~~~~~~~~------------~~~~~~~~v~~ 271 (519)
.++ .-..-+|..+. ++|.+.. ++-.-..++.+.|.||..-.+... ....+.++||.
T Consensus 248 k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~ 324 (381)
T COG3055 248 KQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYI 324 (381)
T ss_pred eEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEE
Confidence 333 34566899886 4443322 222224788999999964322111 12246788999
Q ss_pred EEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCCC-CccceE
Q 010034 272 LDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS-TFGDIW 320 (519)
Q Consensus 272 yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~-~~~D~w 320 (519)
+| .+.|+.+..+ |.++.+..++..++.+|++||..... ....+.
T Consensus 325 ~d--~g~Wk~~GeL---p~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~ 369 (381)
T COG3055 325 FD--NGSWKIVGEL---PQGLAYGVSLSYNNKVLLIGGETSGGKATTRVY 369 (381)
T ss_pred Ec--CCceeeeccc---CCCccceEEEecCCcEEEEccccCCCeeeeeEE
Confidence 99 8999999885 44888888899999999999977543 334443
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=1.7e-15 Score=146.69 Aligned_cols=242 Identities=22% Similarity=0.347 Sum_probs=173.5
Q ss_pred ceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCC-----CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 010034 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-----KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~-----~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~ 76 (519)
..|++++ +|+| .+|.+..+++++ +.||+|||... .+..+|+|+|||.+++|.++.+. .|..
T Consensus 70 k~W~~~a--~FpG---~~rnqa~~a~~~-~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--------sP~g 135 (381)
T COG3055 70 KGWTKIA--DFPG---GARNQAVAAVIG-GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--------SPTG 135 (381)
T ss_pred CCceEcc--cCCC---cccccchheeeC-CeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--------cccc
Confidence 3699998 4444 678888888888 69999999863 34678999999999999999754 4666
Q ss_pred cceeEEEEeCC-eEEEEccccCC----------------------------------cCCCcEEEEECCCCeEEEEeeCC
Q 010034 77 RAFHIAVAIDC-HMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSFG 121 (519)
Q Consensus 77 R~~h~~~~~~~-~iyv~GG~~~~----------------------------------~~~~dv~~yd~~t~~W~~~~~~g 121 (519)
-.+++++.+++ +||++||++.. .....++.|||.+++|+.+-
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G--- 212 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG--- 212 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---
Confidence 78999999987 99999997420 11355889999999998876
Q ss_pred CCCC-CCCccEEEEECCcEEEEEecCCC-CcCCCcEEEEECC--CCcEEEeccCCCCCCc-------ccCeeEEEeCCEE
Q 010034 122 DLPS-PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTI--SLEWMQLPVTGSVPPP-------RCGHTATMVEKRL 190 (519)
Q Consensus 122 ~~P~-~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~--t~~W~~l~~~~~~p~~-------r~~~~~~~~~~~l 190 (519)
..|- ++++ +++++.++++.++-|.-. .-....+++++.. .-+|..++ ++|.+ ..++-.-..++.+
T Consensus 213 ~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~ 288 (381)
T COG3055 213 ENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEV 288 (381)
T ss_pred cCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeE
Confidence 3444 4444 566666668888887642 2344556666655 56799997 44443 3333344457899
Q ss_pred EEEcccCCCCC-------------cccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCC
Q 010034 191 LIYGGRGGGGP-------------IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (519)
Q Consensus 191 yv~GG~~~~~~-------------~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~ 257 (519)
.|.||..-.+. -+..-|. +.|+.+| .+.|..+. .+|.++.+-.++..++++|++||.+..+
T Consensus 289 lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~-~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 289 LVAGGANFPGALKAYKNGKFYAHEGLSKSWN-SEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred EEecCCCChhHHHHHHhcccccccchhhhhh-ceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCCC
Confidence 99999764221 1222233 4566666 89999997 8999888888888999999999998776
Q ss_pred CcccccceeCcEEEEEcCC
Q 010034 258 WLSRYDIYYNDTIILDRLS 276 (519)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~t 276 (519)
....+++.+-...
T Consensus 363 ------ka~~~v~~l~~~g 375 (381)
T COG3055 363 ------KATTRVYSLSWDG 375 (381)
T ss_pred ------eeeeeEEEEEEcC
Confidence 4555565554433
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.62 E-value=2.9e-16 Score=156.79 Aligned_cols=203 Identities=18% Similarity=0.260 Sum_probs=155.0
Q ss_pred CCCeEEEEeeCC-------CCCCCCCccEEEEE-CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCe
Q 010034 110 DIWQWSELTSFG-------DLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (519)
Q Consensus 110 ~t~~W~~~~~~g-------~~P~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~ 181 (519)
-+..|++++... .-|..|.+|+|+.. +++.||++||+++.+.+.|.|.|+...+.|+.+...+..|..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 356799887643 47889999999986 4469999999999999999999999999999999888899999999
Q ss_pred eEEEeCC--EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCC---CCCCCcceeEEEEeCCE--EEEEeccC
Q 010034 182 TATMVEK--RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG---QAPSSRCGHTITSGGHY--LLLFGGHG 254 (519)
Q Consensus 182 ~~~~~~~--~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g---~~P~~r~~~s~~~~~~~--iyv~GG~~ 254 (519)
.|+.... +||+.|-+-+..... ..-.-+++++||.+++.|..+.... .-|...+.|.+++.+.+ +|||||..
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~-~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRN-SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhcccccccc-ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 9999854 999999765433110 0001145667799999999986431 24788899999998887 99999986
Q ss_pred CCCCcccccceeCcEEEEEcCCCeEEEcccCCC-------CCCCCcceEEEEe--CCEEEEEccCCCCCCcc
Q 010034 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNE-------PPPARAYHSMTCL--GSLYLLFGGFDGKSTFG 317 (519)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~-------~p~~R~~~~~v~~--~~~iyv~GG~~~~~~~~ 317 (519)
-.. .+-....+|.||.....|..+..... ....|.+|++-.. +..+|++||......++
T Consensus 396 ~~~----~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~ 463 (723)
T KOG2437|consen 396 LTC----NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELN 463 (723)
T ss_pred ccC----CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEe
Confidence 532 22356789999999999987643211 1336777776655 57899999987655443
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.16 E-value=6.4e-11 Score=85.06 Aligned_cols=49 Identities=31% Similarity=0.592 Sum_probs=45.7
Q ss_pred CcceeEEEEeCCeEEEEccccC-CcCCCcEEEEECCCCeEEEEeeCCCCCCCC
Q 010034 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPR 127 (519)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r 127 (519)
||.+|++++++++|||+||... ....+++++||+++++|++++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999999999999988 778999999999999999998 699887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.08 E-value=3.2e-10 Score=81.40 Aligned_cols=49 Identities=41% Similarity=0.740 Sum_probs=45.1
Q ss_pred CCCccEEEEECCcEEEEEecCCC-CcCCCcEEEEECCCCcEEEeccCCCCCCcc
Q 010034 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (519)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r 178 (519)
+|.+|+++++++ +|||+||... ....+++++||+.|++|++++ +||.||
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 688999999976 9999999988 688999999999999999998 899887
No 33
>PLN02772 guanylate kinase
Probab=98.95 E-value=4.1e-09 Score=106.63 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=78.0
Q ss_pred CCCCcceeEEEEeCCeEEEEccccCCc-CCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcC
Q 010034 73 GPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW 151 (519)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~-~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~ 151 (519)
.+.++.+|+++.+++++|||||.+... ..+.+++||..|++|......|..|.+|.+|++|++++++|+|+++..+.
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 456889999999999999999987754 67899999999999999998999999999999999988899999876544
Q ss_pred CCcEEEEECCCC
Q 010034 152 LSDVYVLDTISL 163 (519)
Q Consensus 152 ~~~v~~yd~~t~ 163 (519)
-.++|.+.+.|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 377888887764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=3e-09 Score=75.91 Aligned_cols=47 Identities=40% Similarity=0.836 Sum_probs=42.6
Q ss_pred CCeEEEEcccc--CCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEE
Q 010034 86 DCHMFIFGGRF--GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI 135 (519)
Q Consensus 86 ~~~iyv~GG~~--~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~ 135 (519)
+++||||||.. +...++++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 5777999999999999999994 79999999999874
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.88 E-value=3.3e-09 Score=74.97 Aligned_cols=44 Identities=30% Similarity=0.551 Sum_probs=40.7
Q ss_pred CcceeEEEEeCCeEEEEccccC-CcCCCcEEEEECCCCeEEEEee
Q 010034 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS 119 (519)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~dv~~yd~~t~~W~~~~~ 119 (519)
||.+|++++++++|||+||... ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999998 7789999999999999999983
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.86 E-value=5.8e-09 Score=74.45 Aligned_cols=46 Identities=43% Similarity=0.936 Sum_probs=41.8
Q ss_pred cEEEEEecCC--CCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEe
Q 010034 138 RKIVMYGGWD--GKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (519)
Q Consensus 138 ~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~ 186 (519)
++||||||.+ ....++++|+||+.+++|+++. ++|.+|++|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 4899999998 5678999999999999999995 89999999999864
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.84 E-value=8.3e-09 Score=73.61 Aligned_cols=44 Identities=43% Similarity=0.833 Sum_probs=40.2
Q ss_pred CcceeEEEEeCCeEEEEccc---cCCcCCCcEEEEECCCCeEEEEee
Q 010034 76 PRAFHIAVAIDCHMFIFGGR---FGSRRLGDFWVLDTDIWQWSELTS 119 (519)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~---~~~~~~~dv~~yd~~t~~W~~~~~ 119 (519)
||.+|++++++++||||||+ ......+++++||+++++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 556778999999999999999873
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.82 E-value=5.6e-09 Score=74.51 Aligned_cols=46 Identities=41% Similarity=0.865 Sum_probs=31.2
Q ss_pred CcceeEEEEe-CCeEEEEccccCC-cCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 76 PRAFHIAVAI-DCHMFIFGGRFGS-RRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 76 ~R~~h~~~~~-~~~iyv~GG~~~~-~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
||.+|+++.+ +++||||||.+.. ..++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6999999998 5899999999885 68999999999999999996 566
No 39
>PLN02772 guanylate kinase
Probab=98.78 E-value=3.9e-08 Score=99.62 Aligned_cols=90 Identities=24% Similarity=0.434 Sum_probs=75.7
Q ss_pred CCCCCCCCcceEEEEECCcEEEEEcCcCCCc-cCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEE
Q 010034 13 GGTVPQPRSGHSAVNIGKSKVVVFGGLVDKR-FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMF 90 (519)
Q Consensus 13 ~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iy 90 (519)
+|--+.+|.+|+++.++ +++|||||.++.. ..+.+++||..+++|......|+ +|.||.+|++|++ +++|+
T Consensus 18 ~~~~~~~~~~~tav~ig-dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~------~P~~r~GhSa~v~~~~ril 90 (398)
T PLN02772 18 NGFGVKPKNRETSVTIG-DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT------GPKPCKGYSAVVLNKDRIL 90 (398)
T ss_pred cCccCCCCCcceeEEEC-CEEEEEcccCCCccccceEEEEECCCCcEecccccCC------CCCCCCcceEEEECCceEE
Confidence 34456799999999999 5999999988765 78899999999999999988774 7999999999999 47999
Q ss_pred EEccccCCcCCCcEEEEECCC
Q 010034 91 IFGGRFGSRRLGDFWVLDTDI 111 (519)
Q Consensus 91 v~GG~~~~~~~~dv~~yd~~t 111 (519)
|+++..+.. +++|.+...|
T Consensus 91 v~~~~~~~~--~~~w~l~~~t 109 (398)
T PLN02772 91 VIKKGSAPD--DSIWFLEVDT 109 (398)
T ss_pred EEeCCCCCc--cceEEEEcCC
Confidence 998866543 5678777765
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=6.2e-09 Score=74.29 Aligned_cols=47 Identities=36% Similarity=0.712 Sum_probs=31.2
Q ss_pred CCCccEEEEECCcEEEEEecCCCC-cCCCcEEEEECCCCcEEEeccCCCCC
Q 010034 126 PRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVP 175 (519)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~l~~~~~~p 175 (519)
||.+|+++.+++++||||||.+.. ..++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 689999999976799999999876 68999999999999999996 655
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.72 E-value=1.4e-08 Score=71.66 Aligned_cols=46 Identities=41% Similarity=0.702 Sum_probs=40.6
Q ss_pred CCCccEEEEECCcEEEEEecCCC-CcCCCcEEEEECCCCcEEEeccCCCCC
Q 010034 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVP 175 (519)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~p 175 (519)
||.+|+++++++ +|||+||.+. ....+++++||+.+++|+.++ +||
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP---PMP 47 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE---EES
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCCEEEEcC---CCC
Confidence 588899999976 9999999988 678999999999999999998 554
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.62 E-value=1e-07 Score=67.93 Aligned_cols=43 Identities=35% Similarity=0.658 Sum_probs=38.5
Q ss_pred CCCccEEEEECCcEEEEEecC---CCCcCCCcEEEEECCCCcEEEec
Q 010034 126 PRDFAAASAIGNRKIVMYGGW---DGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
+|..|+++++++ +||||||+ ......++++.||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 588999999966 99999999 45578899999999999999997
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.60 E-value=8.9e-08 Score=65.80 Aligned_cols=40 Identities=38% Similarity=0.624 Sum_probs=36.0
Q ss_pred CCCCcceeEEEEeCCeEEEEccccC--CcCCCcEEEEECCCC
Q 010034 73 GPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIW 112 (519)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~dv~~yd~~t~ 112 (519)
+|.+|.+|++++++++||||||... ...++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 677999999999864
No 44
>smart00612 Kelch Kelch domain.
Probab=98.56 E-value=9.6e-08 Score=67.07 Aligned_cols=47 Identities=40% Similarity=0.777 Sum_probs=42.2
Q ss_pred EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC
Q 010034 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (519)
Q Consensus 139 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~ 188 (519)
+||++||.++....+++++||+.+++|+.++ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999987677899999999999999998 8999999999988754
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.56 E-value=1.3e-07 Score=64.90 Aligned_cols=40 Identities=38% Similarity=0.794 Sum_probs=35.8
Q ss_pred CCCCCcceEEEEECCcEEEEEcCcC--CCccCCcEEEEEcCCC
Q 010034 16 VPQPRSGHSAVNIGKSKVVVFGGLV--DKRFLSDVVVYDIDNK 56 (519)
Q Consensus 16 ~P~~R~gh~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd~~~~ 56 (519)
+|.+|.+|++++++ +.||||||.. ....++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 48999999999998 6999999998 4778999999998763
No 46
>smart00612 Kelch Kelch domain.
Probab=98.50 E-value=1.6e-07 Score=65.91 Aligned_cols=46 Identities=28% Similarity=0.596 Sum_probs=41.1
Q ss_pred eEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEEC
Q 010034 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG 136 (519)
Q Consensus 88 ~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~ 136 (519)
+||++||..+....+++++||+.+++|+.++ +||.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeC
Confidence 5899999987667899999999999999988 699999999988874
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.44 E-value=1.9e-05 Score=75.71 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=102.7
Q ss_pred EEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCC----CcEEEeccCCCCCCccc
Q 010034 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS----LEWMQLPVTGSVPPPRC 179 (519)
Q Consensus 104 v~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~l~~~~~~p~~r~ 179 (519)
--+||+.+++++.+. .+.--+..+.+...||++.+.||.... ...+-.|++.+ ..|.+... .|..+|.
T Consensus 48 s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 457999999999886 445555555666788999999998542 34577788765 67988752 4889999
Q ss_pred CeeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCC-----CceEEecC-CCCCCCCcceeEEEEeCCEEEEEec
Q 010034 180 GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-----PGWTQLKL-PGQAPSSRCGHTITSGGHYLLLFGG 252 (519)
Q Consensus 180 ~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t-----~~W~~i~~-~g~~P~~r~~~s~~~~~~~iyv~GG 252 (519)
..+++.+ +++++|+||.... ..+.+.... ..|..+.. ....+..-+-+....-+|+||+++.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9999888 7899999998632 112222211 12222221 1123444455566667899999997
Q ss_pred cCCCCCcccccceeCcEEEEEcCCCeE-EEcccCCC
Q 010034 253 HGTGGWLSRYDIYYNDTIILDRLSAQW-KRLPIGNE 287 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~~ 287 (519)
.. -.+||+.++++ +.++.++.
T Consensus 189 ~~--------------s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 189 RG--------------SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CC--------------cEEEeCCCCeEEeeCCCCCC
Confidence 43 47899999987 77887644
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.39 E-value=9.7e-06 Score=77.08 Aligned_cols=181 Identities=20% Similarity=0.280 Sum_probs=107.6
Q ss_pred CCCCCCccEEEEE---CC---cEEEEEecCCCC-cCCCcEEEEECCCCc--------EEEeccCCCCCCcccCeeEEEe-
Q 010034 123 LPSPRDFAAASAI---GN---RKIVMYGGWDGK-KWLSDVYVLDTISLE--------WMQLPVTGSVPPPRCGHTATMV- 186 (519)
Q Consensus 123 ~P~~r~~~~~~~~---~~---~~iyv~GG~~~~-~~~~~v~~yd~~t~~--------W~~l~~~~~~p~~r~~~~~~~~- 186 (519)
+|+.|. .+.+.+ .+ ...+|.||++.+ +..+++|+....+.. ..+....|+.|.+|++|++.++
T Consensus 19 LPPLR~-PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 19 LPPLRC-PAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred CCCCCC-ccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 667774 344444 11 245677999866 456678888766433 3333345899999999999887
Q ss_pred ---CCEEEEEcccCCCC--Ccccccc-----cccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCC
Q 010034 187 ---EKRLLIYGGRGGGG--PIMGDLW-----ALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (519)
Q Consensus 187 ---~~~lyv~GG~~~~~--~~~~d~~-----~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~ 256 (519)
+...++|||++.-. +....-| +...++..|++.+..+.-..+ .+......|.+..-++.+|++||..-.
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEcc
Confidence 23688899987521 2222222 123455668888877766533 455666777788889999999998643
Q ss_pred CCcccccceeCcEEEEEcCCC---eEEEcccCCCCCCCCcceEEEEe---CCEEEEEccCCCC
Q 010034 257 GWLSRYDIYYNDTIILDRLSA---QWKRLPIGNEPPPARAYHSMTCL---GSLYLLFGGFDGK 313 (519)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~t~---~W~~v~~~~~~p~~R~~~~~v~~---~~~iyv~GG~~~~ 313 (519)
. +..-..++++.++-- -+-.... .+......++++. .+..+|+||+...
T Consensus 177 s-----d~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 177 S-----DSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred C-----CCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 2 223345666553311 1111111 1223333333332 3788899998753
No 49
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.26 E-value=2.5e-05 Score=74.33 Aligned_cols=133 Identities=22% Similarity=0.351 Sum_probs=87.9
Q ss_pred ceeCCCCCCCCCCCcceEEEEE---CCcEEEEEcCcCC---C-----------ccCCcEEEEEcCCCcEEeeeecCCCCC
Q 010034 7 ASSSDFGGTVPQPRSGHSAVNI---GKSKVVVFGGLVD---K-----------RFLSDVVVYDIDNKLWFQPECTGNGSN 69 (519)
Q Consensus 7 ~~~~~~~g~~P~~R~gh~~~~~---~~~~lyv~GG~~~---~-----------~~~~~~~~yd~~~~~W~~l~~~~~~~~ 69 (519)
..+++..|..|.+|+||++-++ ++..+++|||..= + ...-.|+..|++-+..+....
T Consensus 75 C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l------ 148 (337)
T PF03089_consen 75 CQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL------ 148 (337)
T ss_pred EecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc------
Confidence 4567888999999999999886 5567999999641 1 233468888998887766542
Q ss_pred CCCCCCCcceeEEEEeCCeEEEEccccC--CcCCCcEEEEECC--CC-eEEEEeeCCCCCCCCCccEEEE--ECCcEEEE
Q 010034 70 GQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTD--IW-QWSELTSFGDLPSPRDFAAASA--IGNRKIVM 142 (519)
Q Consensus 70 ~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~dv~~yd~~--t~-~W~~~~~~g~~P~~r~~~~~~~--~~~~~iyv 142 (519)
|....+-++|.+.+-++.+|++||..- +.....+++...+ -+ -+-... -++.+....++.+ ++.....|
T Consensus 149 -pEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~---vl~~glSisSAIvt~~~~~e~iI 224 (337)
T PF03089_consen 149 -PELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCT---VLQGGLSISSAIVTQTGPHEYII 224 (337)
T ss_pred -hhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEE---ECCCCceEeeeeEeecCCCceEE
Confidence 245567889999999999999999853 2333445554332 11 111222 2444544444444 34458889
Q ss_pred EecCCCC
Q 010034 143 YGGWDGK 149 (519)
Q Consensus 143 ~GG~~~~ 149 (519)
+||+..+
T Consensus 225 lGGY~sd 231 (337)
T PF03089_consen 225 LGGYQSD 231 (337)
T ss_pred Eeccccc
Confidence 9998543
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.25 E-value=0.00032 Score=67.41 Aligned_cols=201 Identities=12% Similarity=0.073 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCC-CCccee-EEEEeC----C-eEEEEccccCCcCCCcEEEEECCCCeEEEEe
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGP-GPRAFH-IAVAID----C-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELT 118 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p-~~R~~h-~~~~~~----~-~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~ 118 (519)
..+.++||.|++|..++... .+ .....+ ...-.+ . ||..+...........+++|+..+++|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~-------~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPK-------SRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCC-------CcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccc
Confidence 56899999999999986321 11 001111 111121 1 5555544322223356899999999999987
Q ss_pred eCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEE-eccCCCCCCcc----cCeeEEEeCCEEEEE
Q 010034 119 SFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPR----CGHTATMVEKRLLIY 193 (519)
Q Consensus 119 ~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~~~~~p~~r----~~~~~~~~~~~lyv~ 193 (519)
.. .+........+.+ +|.+|-+.-.........+..||+.+.+|.. ++ +|..+ ....++.++++|.++
T Consensus 87 ~~--~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v 159 (230)
T TIGR01640 87 CS--PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVL 159 (230)
T ss_pred cC--CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEE
Confidence 31 2221112224445 5588888644322111269999999999995 64 33332 234566668998887
Q ss_pred cccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcc----eeEEEEeCCEEEEEeccCCCCCcccccceeCcE
Q 010034 194 GGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC----GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (519)
Q Consensus 194 GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~----~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v 269 (519)
....... .-++|.++ |-....|++.-.-...+.+.. ....+..+++|++.... ..+ .-+
T Consensus 160 ~~~~~~~--~~~IWvl~-----d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~---------~~~ 222 (230)
T TIGR01640 160 KQKKDTN--NFDLWVLN-----DAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP---------FYI 222 (230)
T ss_pred EecCCCC--cEEEEEEC-----CCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc---------eEE
Confidence 7543221 24677764 333456997542111111111 12345577888887752 110 137
Q ss_pred EEEEcCCC
Q 010034 270 IILDRLSA 277 (519)
Q Consensus 270 ~~yd~~t~ 277 (519)
..||+.++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 88998764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.19 E-value=8.2e-05 Score=71.35 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=94.3
Q ss_pred EEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-eCCeEEEEccccCCcCCCcEEEEECCC----CeEEEEeeCCC
Q 010034 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDI----WQWSELTSFGD 122 (519)
Q Consensus 48 ~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~dv~~yd~~t----~~W~~~~~~g~ 122 (519)
-..||+.+++++.+... .--.|.+.+. -++++.+.||...+. ..+-.|++.+ ..|.+... .
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~~L~dG~ll~tGG~~~G~--~~ir~~~p~~~~~~~~w~e~~~--~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGAFLPDGRLLQTGGDNDGN--KAIRIFTPCTSDGTCDWTESPN--D 113 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcCCCCCCCEEEeCCCCccc--cceEEEecCCCCCCCCceECcc--c
Confidence 44599999999988632 2223333333 378999999986532 4577788765 67988764 4
Q ss_pred CCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECC-----CCcEEEeccC-CCCCCcccCeeEEEeCCEEEEEccc
Q 010034 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-----SLEWMQLPVT-GSVPPPRCGHTATMVEKRLLIYGGR 196 (519)
Q Consensus 123 ~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-----t~~W~~l~~~-~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (519)
|-.+|...++..+.||+++|+||.... ..+.+... ...|..+... ...+...+-+..+.-+++|++++..
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 899999999999999999999998732 12222221 1223222211 1223334445555558999999875
Q ss_pred CCCCCcccccccccccccccCCCCce-EEec
Q 010034 197 GGGGPIMGDLWALKGLIEEENETPGW-TQLK 226 (519)
Q Consensus 197 ~~~~~~~~d~~~l~~v~~Yd~~t~~W-~~i~ 226 (519)
.. ..||+.++++ ..++
T Consensus 190 ~s--------------~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 190 GS--------------IIYDYKTNTVVRTLP 206 (243)
T ss_pred Cc--------------EEEeCCCCeEEeeCC
Confidence 32 3369999977 5555
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.98 E-value=0.0011 Score=63.53 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=107.0
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCC---CCccEEEE-E----CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSP---RDFAAASA-I----GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~---r~~~~~~~-~----~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~ 173 (519)
..+.++||.|++|..++. ++.+ ...+.... . ++-++..+...........+++|+..++.|+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--
Confidence 468999999999999973 2221 11111111 1 222566665432222345789999999999998722
Q ss_pred CCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEE-ecCCCCCCCCcceeEEEEeCCEEEEEec
Q 010034 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSSRCGHTITSGGHYLLLFGG 252 (519)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~-i~~~g~~P~~r~~~s~~~~~~~iyv~GG 252 (519)
.+........+.++|.+|-+.-...... ...+..||..+.+|.. ++.+............+..+|++.++..
T Consensus 89 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~-------~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCINGVLYYLAYTLKTNP-------DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECCEEEEEEEECCCCC-------cEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 1111112226778999998864332110 1257889999999995 6522111111112345557788888765
Q ss_pred cCCCCCcccccceeCcEEEEE-cCCCeEEEcccCCCCCCCCcc----eEEEEeCCEEEEEcc
Q 010034 253 HGTGGWLSRYDIYYNDTIILD-RLSAQWKRLPIGNEPPPARAY----HSMTCLGSLYLLFGG 309 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd-~~t~~W~~v~~~~~~p~~R~~----~~~v~~~~~iyv~GG 309 (519)
..... .-++|+.+ -....|+++-..+.++.+... ...+..+++|++..+
T Consensus 162 ~~~~~--------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 162 KKDTN--------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred cCCCC--------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 43211 14789986 446679986554422222222 223445788888765
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.12 E-value=0.27 Score=51.24 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=113.5
Q ss_pred ECCcEEEEEcCcCCCccCCcEEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEE
Q 010034 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (519)
Q Consensus 28 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~ 105 (519)
+.+++||+.+.. ..+++||..++ .|+.-....... ....+.++.....++.++++|+.+. + ..++
T Consensus 67 v~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~v~v~~~-~-----g~l~ 133 (394)
T PRK11138 67 VAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGW-FSKNKSALLSGGVTVAGGKVYIGSE-K-----GQVY 133 (394)
T ss_pred EECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccc-cccccccccccccEEECCEEEEEcC-C-----CEEE
Confidence 334789987652 36899998865 587632110000 0000011223345667888887432 2 3589
Q ss_pred EEECCCC--eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EEEeccCCCCCC--ccc
Q 010034 106 VLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPP--PRC 179 (519)
Q Consensus 106 ~yd~~t~--~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~p~--~r~ 179 (519)
.+|.+|+ .|+.-.. ... .+..++.++.+|+..+. ..++.+|+.+++ |+.-. ..|. .+.
T Consensus 134 ald~~tG~~~W~~~~~-----~~~--~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~---~~~~~~~~~ 197 (394)
T PRK11138 134 ALNAEDGEVAWQTKVA-----GEA--LSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNL---DVPSLTLRG 197 (394)
T ss_pred EEECCCCCCcccccCC-----Cce--ecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecC---CCCcccccC
Confidence 9999876 5865431 111 22223335578875431 348999998876 87643 2221 122
Q ss_pred CeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEecC--CCCCCCCc---ceeEEEEeCCEEEEEec
Q 010034 180 GHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKL--PGQAPSSR---CGHTITSGGHYLLLFGG 252 (519)
Q Consensus 180 ~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~--~W~~i~~--~g~~P~~r---~~~s~~~~~~~iyv~GG 252 (519)
..+-+..++.+|+..+. ..+..+|+.++ .|+.... .+.....| ...+-++.++.+|+.+.
T Consensus 198 ~~sP~v~~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~ 264 (394)
T PRK11138 198 ESAPATAFGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY 264 (394)
T ss_pred CCCCEEECCEEEEEcCC-------------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc
Confidence 22334446676664331 12334455554 4764321 00000001 11233456888887652
Q ss_pred cCCCCCcccccceeCcEEEEEcCCC--eEEEcccCCCCCCCCcceEEEEeCCEEEEEcc
Q 010034 253 HGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG 309 (519)
...++.+|+.+. .|+.-.. . . ...+..++++|+...
T Consensus 265 -------------~g~l~ald~~tG~~~W~~~~~--~---~---~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 265 -------------NGNLVALDLRSGQIVWKREYG--S---V---NDFAVDGGRIYLVDQ 302 (394)
T ss_pred -------------CCeEEEEECCCCCEEEeecCC--C---c---cCcEEECCEEEEEcC
Confidence 135889998764 4875211 1 1 124567888998753
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.69 E-value=0.52 Score=49.10 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=102.3
Q ss_pred CcEEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCC--eEEEEeeCC
Q 010034 46 SDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG 121 (519)
Q Consensus 46 ~~~~~yd~~~~~--W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~--~W~~~~~~g 121 (519)
+.++.+|+.+++ |+.-... +....+...+-++.++.+|+..+ + ..++.+|+.++ .|+.-..
T Consensus 170 g~l~ald~~tG~~~W~~~~~~-------~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~-- 234 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDV-------PSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRIS-- 234 (394)
T ss_pred CEEEEEEccCCCEeeeecCCC-------CcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccc--
Confidence 357888887764 7664210 00111222233345666666433 2 34788888876 4764321
Q ss_pred CCCCC-----C---CccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EEEeccCCCCCCcccCeeEEEeCCEEE
Q 010034 122 DLPSP-----R---DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLL 191 (519)
Q Consensus 122 ~~P~~-----r---~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~ly 191 (519)
.|.. | ...+.++. ++.+|+.+. + ..++.+|+.+++ |+.-. ..+ ...+..++++|
T Consensus 235 -~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy 298 (394)
T PRK11138 235 -QPTGATEIDRLVDVDTTPVVV-GGVVYALAY-N-----GNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIY 298 (394)
T ss_pred -cCCCccchhcccccCCCcEEE-CCEEEEEEc-C-----CeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEE
Confidence 1111 1 11223344 458887653 2 358999998875 87632 111 12455688999
Q ss_pred EEcccCCCCCcccccccccccccccCCCC--ceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcE
Q 010034 192 IYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (519)
Q Consensus 192 v~GG~~~~~~~~~d~~~l~~v~~Yd~~t~--~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v 269 (519)
+.... ..++.+|+.++ .|+.-.. ..+...+.++.++.+|+... ...+
T Consensus 299 ~~~~~-------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~-------------~G~l 347 (394)
T PRK11138 299 LVDQN-------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDS-------------EGYL 347 (394)
T ss_pred EEcCC-------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeC-------------CCEE
Confidence 87532 23445576665 4764321 11222234557888887432 1347
Q ss_pred EEEEcCCCe--EEE-cccCCCCCCCCcceEEEEeCCEEEEEc
Q 010034 270 IILDRLSAQ--WKR-LPIGNEPPPARAYHSMTCLGSLYLLFG 308 (519)
Q Consensus 270 ~~yd~~t~~--W~~-v~~~~~~p~~R~~~~~v~~~~~iyv~G 308 (519)
+++|+.+.+ |+. +. ......+-+..+++|||-.
T Consensus 348 ~~ld~~tG~~~~~~~~~------~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 348 HWINREDGRFVAQQKVD------SSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred EEEECCCCCEEEEEEcC------CCcceeCCEEECCEEEEEe
Confidence 888887654 443 21 1223444556788877763
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.49 E-value=0.13 Score=52.52 Aligned_cols=120 Identities=23% Similarity=0.358 Sum_probs=75.1
Q ss_pred EECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCC----
Q 010034 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG---- 102 (519)
Q Consensus 27 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~---- 102 (519)
.+.+.+|+..+.. ....+||+.+..-..+ |.++.+...-.++.++++||++..........
T Consensus 73 al~gskIv~~d~~------~~t~vyDt~t~av~~~---------P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 73 ALHGSKIVAVDQS------GRTLVYDTDTRAVATG---------PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred EecCCeEEEEcCC------CCeEEEECCCCeEecc---------CCCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence 3444688888664 3488999999876543 34555566667778899999998764322211
Q ss_pred -cEEEE--E--------CCCCeEEEEeeCCCCCCCCCc-------cEEEEECCcEEEE-EecCCCCcCCCcEEEEECCCC
Q 010034 103 -DFWVL--D--------TDIWQWSELTSFGDLPSPRDF-------AAASAIGNRKIVM-YGGWDGKKWLSDVYVLDTISL 163 (519)
Q Consensus 103 -dv~~y--d--------~~t~~W~~~~~~g~~P~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~v~~yd~~t~ 163 (519)
.++++ + .....|..+++ +|..+.. .+-+++++..|+| .-|.. ...|.||+.+.
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~ 209 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESH 209 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCc
Confidence 44554 3 34567888873 3333322 2223334457777 33321 34899999999
Q ss_pred cEEEec
Q 010034 164 EWMQLP 169 (519)
Q Consensus 164 ~W~~l~ 169 (519)
+|++.-
T Consensus 210 ~W~~~G 215 (342)
T PF07893_consen 210 EWRKHG 215 (342)
T ss_pred ceeecc
Confidence 999984
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.26 E-value=0.053 Score=53.48 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=71.2
Q ss_pred cCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEccccCCc-CCCcEEEEECCCCeEEEEeeC-
Q 010034 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSF- 120 (519)
Q Consensus 44 ~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~-~~~dv~~yd~~t~~W~~~~~~- 120 (519)
.+..++.||+.+.+|..+... -... -..+... ++++|+.|-..-.. ....+-.||..+++|+.+...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---------i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---------ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---------ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc
Confidence 578999999999999987421 1111 1333333 67888887655433 456689999999999988752
Q ss_pred -CCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEec
Q 010034 121 -GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 121 -g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
..+|.+.............+++.|.... -..-+..| +-.+|..+.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEE--cCCceEecc
Confidence 3466665332222233347887776521 12335556 577999986
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.10 E-value=2.1 Score=44.18 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=99.4
Q ss_pred CcEEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCC--eEEEEeeCC
Q 010034 46 SDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG 121 (519)
Q Consensus 46 ~~~~~yd~~~~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~--~W~~~~~~g 121 (519)
..++++|+.++ .|+..... +....+...+.++.++.+| +|... ..++.+|+.++ .|+.-..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-------~~~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~~-- 219 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-------PALTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQTGQPLWEQRVA-- 219 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-------CceeecCCCCCEEECCEEE-EECCC-----CEEEEEEccCCCEeeeeccc--
Confidence 45888898765 47653211 0001122233445566554 43322 25889998776 4764321
Q ss_pred CCCCCC-------CccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EEEeccCCCCCCcccCeeEEEeCCEEEE
Q 010034 122 DLPSPR-------DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (519)
Q Consensus 122 ~~P~~r-------~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~lyv 192 (519)
.|... ...+..++.++.+|+.+. + ..++.||+.+.+ |+.-. + ...+.+..++++|+
T Consensus 220 -~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv 284 (377)
T TIGR03300 220 -LPKGRTELERLVDVDGDPVVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYV 284 (377)
T ss_pred -cCCCCCchhhhhccCCccEEECCEEEEEEc-C-----CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEE
Confidence 11111 011222333558887543 2 348999998764 76531 1 11233456888888
Q ss_pred EcccCCCCCcccccccccccccccCCCC--ceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEE
Q 010034 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (519)
Q Consensus 193 ~GG~~~~~~~~~d~~~l~~v~~Yd~~t~--~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~ 270 (519)
.... ..++++|..++ .|+..... .+...+.++.++.+|+.. . ...++
T Consensus 285 ~~~~-------------G~l~~~d~~tG~~~W~~~~~~-----~~~~ssp~i~g~~l~~~~-~------------~G~l~ 333 (377)
T TIGR03300 285 TDAD-------------GVVVALDRRSGSELWKNDELK-----YRQLTAPAVVGGYLVVGD-F------------EGYLH 333 (377)
T ss_pred ECCC-------------CeEEEEECCCCcEEEcccccc-----CCccccCEEECCEEEEEe-C------------CCEEE
Confidence 6421 23445566655 47653211 112223345677777643 1 24578
Q ss_pred EEEcCCC--eEEEcccCCCCCCCCcceEEEEeCCEEEEEc
Q 010034 271 ILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (519)
Q Consensus 271 ~yd~~t~--~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~G 308 (519)
++|+.+. .|+. +.. ......+.+..+++||+.+
T Consensus 334 ~~d~~tG~~~~~~-~~~----~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 334 WLSREDGSFVARL-KTD----GSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EEECCCCCEEEEE-EcC----CCccccCCEEECCEEEEEe
Confidence 8888654 3432 211 1124445567788877554
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.10 E-value=1.7 Score=44.84 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred EeCCeEEEEccccCCcCCCcEEEEECCCC--eEEEEeeCCCCCC-CCCccEEEEECCcEEEEEecCCCCcCCCcEEEEEC
Q 010034 84 AIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (519)
Q Consensus 84 ~~~~~iyv~GG~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 160 (519)
+.++.+|+..+ -..++.+|+.++ .|+.-.. ..+. .+...+.++.+ +.+| +|..+ ..++.+|+
T Consensus 143 v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~--~~~~~~~~~~sp~~~~-~~v~-~~~~~-----g~v~ald~ 207 (377)
T TIGR03300 143 VANGLVVVRTN------DGRLTALDAATGERLWTYSRV--TPALTLRGSASPVIAD-GGVL-VGFAG-----GKLVALDL 207 (377)
T ss_pred EECCEEEEECC------CCeEEEEEcCCCceeeEEccC--CCceeecCCCCCEEEC-CEEE-EECCC-----CEEEEEEc
Confidence 34556665432 134889999876 4765431 1111 12223334443 3554 44332 24889998
Q ss_pred CCCc--EEEeccCCCCCCc--------ccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEecCC
Q 010034 161 ISLE--WMQLPVTGSVPPP--------RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLP 228 (519)
Q Consensus 161 ~t~~--W~~l~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~--~W~~i~~~ 228 (519)
.+++ |+.-. ..+.. ....+.+..++.+|+.... ..++.||+.++ .|..-.
T Consensus 208 ~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------------g~l~a~d~~tG~~~W~~~~-- 269 (377)
T TIGR03300 208 QTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------------GRVAALDLRSGRVLWKRDA-- 269 (377)
T ss_pred cCCCEeeeecc---ccCCCCCchhhhhccCCccEEECCEEEEEEcC-------------CEEEEEECCCCcEEEeecc--
Confidence 8764 76432 11111 1122334457788875421 23555677665 365431
Q ss_pred CCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCC--eEEEcccCCCCCCCCcceEEEEeCCEEEE
Q 010034 229 GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLL 306 (519)
Q Consensus 229 g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~p~~R~~~~~v~~~~~iyv 306 (519)
+. ..+.++.++.+|+... ...++++|..+. .|+.-... .+...+.+..++.+|+
T Consensus 270 ---~~---~~~p~~~~~~vyv~~~-------------~G~l~~~d~~tG~~~W~~~~~~-----~~~~ssp~i~g~~l~~ 325 (377)
T TIGR03300 270 ---SS---YQGPAVDDNRLYVTDA-------------DGVVVALDRRSGSELWKNDELK-----YRQLTAPAVVGGYLVV 325 (377)
T ss_pred ---CC---ccCceEeCCEEEEECC-------------CCeEEEEECCCCcEEEcccccc-----CCccccCEEECCEEEE
Confidence 11 1233457888888642 145888998654 57652211 1223333456777776
Q ss_pred E
Q 010034 307 F 307 (519)
Q Consensus 307 ~ 307 (519)
.
T Consensus 326 ~ 326 (377)
T TIGR03300 326 G 326 (377)
T ss_pred E
Confidence 4
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.84 E-value=1.7 Score=41.17 Aligned_cols=185 Identities=17% Similarity=0.239 Sum_probs=102.8
Q ss_pred EEECCcEEEEEcCcCCCccCCcEEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCc
Q 010034 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (519)
Q Consensus 26 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~d 103 (519)
.+..++++|+..+ ...++++|+.+++ |+.-. +.+ .....+..++.+|+..+. +.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----------~~~-~~~~~~~~~~~v~v~~~~------~~ 87 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----------PGP-ISGAPVVDGGRVYVGTSD------GS 87 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----------SSC-GGSGEEEETTEEEEEETT------SE
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----------ccc-ccceeeecccccccccce------ee
Confidence 3334478888743 3679999998774 76642 111 112246778888887621 26
Q ss_pred EEEEECCCC--eEE-EEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EEEeccCCCCCCcc
Q 010034 104 FWVLDTDIW--QWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR 178 (519)
Q Consensus 104 v~~yd~~t~--~W~-~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~p~~r 178 (519)
++.+|..++ .|+ ........+ .+.....++. ++.+|+... ...++.+|+.+++ |+.-. ..+...
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~ 156 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGS 156 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS
T ss_pred eEecccCCcceeeeeccccccccc-cccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCC
Confidence 999998776 588 444211111 2222333333 436766553 3458999999876 66643 222111
Q ss_pred --------cCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCc--eEEecCCCCCCCCcceeEEEEeCCEEE
Q 010034 179 --------CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSSRCGHTITSGGHYLL 248 (519)
Q Consensus 179 --------~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~--W~~i~~~g~~P~~r~~~s~~~~~~~iy 248 (519)
.....+..++.+|+..+... +..+|..+++ |+.. ..+ ........++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~ 216 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR-------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLY 216 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS-------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEE
T ss_pred cceeeecccccceEEECCEEEEEcCCCe-------------EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEE
Confidence 11233334678888765421 2334778876 7433 211 1112445677887
Q ss_pred EEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
+.. . ...++++|+.+.+
T Consensus 217 ~~~-~------------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTS-S------------DGRLYALDLKTGK 233 (238)
T ss_dssp EEE-T------------TTEEEEEETTTTE
T ss_pred EEe-C------------CCEEEEEECCCCC
Confidence 766 2 1568999998764
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.62 E-value=0.13 Score=50.68 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCc-CCCcEEEEECCCCcEEEeccC--CCCCC
Q 010034 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQLPVT--GSVPP 176 (519)
Q Consensus 100 ~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~--~~~p~ 176 (519)
....+..||+.+.+|..+.. --.+ .-.++....+.++|+.|-..-.. ....+-.||..+.+|+.+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46789999999999988763 1112 12334444566888888665433 456688999999999998742 24566
Q ss_pred cccCeeEEEeC-CEEEEEcccCCCCCcccccccccccccccCCCCceEEecC
Q 010034 177 PRCGHTATMVE-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL 227 (519)
Q Consensus 177 ~r~~~~~~~~~-~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~ 227 (519)
+.........+ +.+++.|.. ..+ -.-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~-~~g--------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS-ANG--------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee-cCC--------CceEEEE--cCCceEeccc
Confidence 64332222233 467777765 222 1334555 5678998873
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.81 Score=47.02 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=85.6
Q ss_pred cEEEEEcCcCCCccCCcEEEEEcCCCcE-EeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEEC
Q 010034 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (519)
Q Consensus 31 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~ 109 (519)
.-+++.+|+++.. .++..|-..|.- +.+-.. -.|-........|....+++|+.. -+|.||.
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~~lqS~~l~---------~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDl 287 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNPKLQSIHLE---------KFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDL 287 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccChhheeeeec---------cCccceeeecCCCceEEEecccce-----EEEEeec
Confidence 4589999987542 255555555541 112111 111122222222333677777543 4899999
Q ss_pred CCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCE
Q 010034 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKR 189 (519)
Q Consensus 110 ~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~ 189 (519)
.+.+-.++.+...++.+- .+.-.+-.++.+.++-|.++. ++.+...|+.|..-- .++....+.+.......
T Consensus 288 e~ak~~k~~~~~g~e~~~-~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKS-MERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSF---KIEGVVSDFTFSSDSKE 358 (514)
T ss_pred cccccccccCCCCcccch-hheeEecCCCCeEEEcccCce-----EEeehhhhhhhhhee---eeccEEeeEEEecCCcE
Confidence 999998887543444221 222222223356666665553 777888888876432 34444455555555668
Q ss_pred EEEEcccCCCCCcccccccccccccccCCCCceE
Q 010034 190 LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWT 223 (519)
Q Consensus 190 lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~ 223 (519)
|++.||.+ .|+++|+..+.-.
T Consensus 359 l~~~~~~G-------------eV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 359 LLASGGTG-------------EVYVWNLRQNSCL 379 (514)
T ss_pred EEEEcCCc-------------eEEEEecCCcceE
Confidence 88988863 3455677777443
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.29 E-value=0.52 Score=48.13 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccc
Q 010034 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEE 215 (519)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Y 215 (519)
.+.+|+..+.. ....+||+.|..-...+ .++.+...-.++.++++||++................-++..|
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 34488888654 33889999999877665 5666666667777899999998765432110000001122233
Q ss_pred c--------CCCCceEEecCCCCCCCCcce-------eEEEEe-CCEEEE-EeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 216 E--------NETPGWTQLKLPGQAPSSRCG-------HTITSG-GHYLLL-FGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 216 d--------~~t~~W~~i~~~g~~P~~r~~-------~s~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
+ ...-.|..++ ++|..+.. .+.+++ +..|+| .-|.. ...|.||..+.+
T Consensus 146 ~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~GTysfDt~~~~ 210 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------WGTYSFDTESHE 210 (342)
T ss_pred ccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------------eEEEEEEcCCcc
Confidence 4 2233566665 33433221 223334 667777 22211 237999999999
Q ss_pred EEEcccC
Q 010034 279 WKRLPIG 285 (519)
Q Consensus 279 W~~v~~~ 285 (519)
|+++..-
T Consensus 211 W~~~GdW 217 (342)
T PF07893_consen 211 WRKHGDW 217 (342)
T ss_pred eeeccce
Confidence 9999764
No 63
>PRK13684 Ycf48-like protein; Provisional
Probab=95.13 E-value=3.5 Score=41.94 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=93.1
Q ss_pred EEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcE
Q 010034 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (519)
Q Consensus 25 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv 104 (519)
...++++.+++.|.. ..+++=+=.-.+|+.+.. +..-..+.+....+..++..|..+ .+
T Consensus 137 i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----------~~~g~~~~i~~~~~g~~v~~g~~G-----~i 195 (334)
T PRK13684 137 ITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----------DAAGVVRNLRRSPDGKYVAVSSRG-----NF 195 (334)
T ss_pred EEEECCCcceeeecc------ceEEEECCCCCCceeCcC----------CCcceEEEEEECCCCeEEEEeCCc-----eE
Confidence 344455566666642 224433334568998752 222234555555555555545443 13
Q ss_pred EEE-ECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEE-CC-CCcEEEeccCCCCCC--ccc
Q 010034 105 WVL-DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD-TI-SLEWMQLPVTGSVPP--PRC 179 (519)
Q Consensus 105 ~~y-d~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd-~~-t~~W~~l~~~~~~p~--~r~ 179 (519)
+.- |....+|+.+. .+..+.-++++...++.++++|.. + ..++. .. -.+|+.+. .|. ...
T Consensus 196 ~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~----~~~~~~~~ 260 (334)
T PRK13684 196 YSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPI----IPEITNGY 260 (334)
T ss_pred EEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcccccc----CCcccccc
Confidence 332 34456899886 455555666666667788888743 2 23332 22 24799764 221 112
Q ss_pred C-eeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEE-EeCCEEEEEecc
Q 010034 180 G-HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT-SGGHYLLLFGGH 253 (519)
Q Consensus 180 ~-~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~-~~~~~iyv~GG~ 253 (519)
. ++++.. ++.+|+.|.... +..-.....+|+.+......|. ....++ ..+++.|+.|..
T Consensus 261 ~l~~v~~~~~~~~~~~G~~G~-------------v~~S~d~G~tW~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 261 GYLDLAYRTPGEIWAGGGNGT-------------LLVSKDGGKTWEKDPVGEEVPS--NFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred ceeeEEEcCCCCEEEEcCCCe-------------EEEeCCCCCCCeECCcCCCCCc--ceEEEEEeCCCceEEECCC
Confidence 2 333333 567888875421 1111345569999863223332 233333 457788888764
No 64
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.07 E-value=1.6 Score=40.66 Aligned_cols=152 Identities=19% Similarity=0.256 Sum_probs=75.2
Q ss_pred EEEEeCCeEEEEccccCCcCCCcEEEEECCCCeE--EEEeeC-CCCCCCCCccEEEEEC-CcEEEEEecCCCCcCCCcEE
Q 010034 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW--SELTSF-GDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVY 156 (519)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W--~~~~~~-g~~P~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 156 (519)
+++..++++|+|-| +.+|+++...... ..+... ..+|... -++.... ++++|+|-|. ..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~I--DAa~~~~~~~~~yfFkg~-------~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPV--DAAFERPDTGKIYFFKGD-------KYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCc--cEEEEECCCCEEEEECCC-------EEE
Confidence 34445689999977 3578887652222 222210 1133222 2233333 3799999663 478
Q ss_pred EEECCCCcEE---EeccCCCCCC--cccCeeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEE-----e
Q 010034 157 VLDTISLEWM---QLPVTGSVPP--PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-----L 225 (519)
Q Consensus 157 ~yd~~t~~W~---~l~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~-----i 225 (519)
+|+..+..+. .++. -..|. .....+.... ++++|+|.|. ..++||...++... +
T Consensus 75 ~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------------~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 75 VYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKGD--------------KYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred EEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeCC--------------EEEEEeCCCccccCCCCcch
Confidence 8876642221 1110 01121 2233333333 5799999873 22334443333211 1
Q ss_pred cCC-CCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 226 KLP-GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 226 ~~~-g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
... ..+|.. ...+....++++|+|-| +..|+||..+.+
T Consensus 140 ~~~w~g~p~~-idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK-VDAAFRWLDGYYYFFKG--------------DQYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC-cceeEEeCCCcEEEEEC--------------CEEEEEeCccce
Confidence 000 023332 22233334489999987 457999988765
No 65
>PRK13684 Ycf48-like protein; Provisional
Probab=95.05 E-value=4.6 Score=41.08 Aligned_cols=177 Identities=12% Similarity=0.179 Sum_probs=87.9
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEE-ECCCCc
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL-DTISLE 164 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y-d~~t~~ 164 (519)
++.+|+.|... .+++=+=.-.+|+.+.. +..-..+.+....++.++++|. .+. ++.- |....+
T Consensus 142 ~~~~~~~g~~G------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~G~-----i~~s~~~gg~t 205 (334)
T PRK13684 142 PGTAEMATNVG------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-RGN-----FYSTWEPGQTA 205 (334)
T ss_pred CCcceeeeccc------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-Cce-----EEEEcCCCCCe
Confidence 34566665421 24443334568998863 2222344555555655555543 221 3332 344467
Q ss_pred EEEeccCCCCCCcccCeeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEE-
Q 010034 165 WMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (519)
Q Consensus 165 W~~l~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~- 242 (519)
|+.+. .+..+.-.+++.. +++++++|.... - .+. =+....+|+.+..+. ......-+++..
T Consensus 206 W~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G~-~-------~~~----s~d~G~sW~~~~~~~-~~~~~~l~~v~~~ 268 (334)
T PRK13684 206 WTPHQ----RNSSRRLQSMGFQPDGNLWMLARGGQ-I-------RFN----DPDDLESWSKPIIPE-ITNGYGYLDLAYR 268 (334)
T ss_pred EEEee----CCCcccceeeeEcCCCCEEEEecCCE-E-------EEc----cCCCCCccccccCCc-cccccceeeEEEc
Confidence 99885 2334444455444 678888874321 0 010 023446899765211 101111223333
Q ss_pred eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEe-CCEEEEEccC
Q 010034 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGF 310 (519)
Q Consensus 243 ~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~-~~~iyv~GG~ 310 (519)
.++.++++|... .++.-.....+|+.+...... +...+.++.. +++.|+.|..
T Consensus 269 ~~~~~~~~G~~G-------------~v~~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 269 TPGEIWAGGGNG-------------TLLVSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCCCEEEEcCCC-------------eEEEeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEECCC
Confidence 356788887532 123333345799997642222 2344555544 6777777653
No 66
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.70 E-value=6.4 Score=40.98 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=84.4
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
+++.+++....+. ...++++|+.++.-..+.. .+... .+.+...++ .|++....++ ..+++.+|+.+..
T Consensus 200 dg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~---~~~~~--~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~ 269 (417)
T TIGR02800 200 DGQKLAYVSFESG--KPEIYVQDLATGQREKVAS---FPGMN--GAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQ 269 (417)
T ss_pred CCCEEEEEEcCCC--CcEEEEEECCCCCEEEeec---CCCCc--cceEECCCCCEEEEEECCCC---CccEEEEECCCCC
Confidence 4444444433322 2569999999987766652 22211 223333344 4655443322 2569999999998
Q ss_pred EEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEe
Q 010034 165 WMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG 243 (519)
Q Consensus 165 W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~ 243 (519)
.+.+.. .+..... ....-++ +|++.....+. ..++.+|..+..+..+...+. .........
T Consensus 270 ~~~l~~---~~~~~~~-~~~s~dg~~l~~~s~~~g~----------~~iy~~d~~~~~~~~l~~~~~----~~~~~~~sp 331 (417)
T TIGR02800 270 LTRLTN---GPGIDTE-PSWSPDGKSIAFTSDRGGS----------PQIYMMDADGGEVRRLTFRGG----YNASPSWSP 331 (417)
T ss_pred EEECCC---CCCCCCC-EEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCCC----CccCeEECC
Confidence 887752 1111111 1112244 45544322211 245666888888877763221 111112234
Q ss_pred CCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEccc
Q 010034 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 244 ~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
+++.+++...... ...++++|+.+..++.+..
T Consensus 332 dg~~i~~~~~~~~---------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 332 DGDLIAFVHREGG---------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred CCCEEEEEEccCC---------ceEEEEEeCCCCCeEEccC
Confidence 5555555543321 2468999998877776654
No 67
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.53 E-value=5.9 Score=42.06 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=78.0
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS 125 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 125 (519)
..+|++|+.+++-..+... +..-........+.+|++....++ ..++|++|+.+++.+++... .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---------~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~---~- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---------PGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRH---R- 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC---------CCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccC---C-
Confidence 5799999988876666422 111011111112345655433222 24799999999988877631 1
Q ss_pred CCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCcc
Q 010034 126 PRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIM 203 (519)
Q Consensus 126 ~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~ 203 (519)
. .....+...++ .|++.....+ ...+|.+|+.+++++.+...+.. .......-++ .|++.+ .....
T Consensus 306 ~-~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~g~--- 373 (448)
T PRK04792 306 A-IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTNGK--- 373 (448)
T ss_pred C-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecCCc---
Confidence 1 11222222333 4555443322 25799999999999988522211 1111222244 455443 22211
Q ss_pred cccccccccccccCCCCceEEec
Q 010034 204 GDLWALKGLIEEENETPGWTQLK 226 (519)
Q Consensus 204 ~d~~~l~~v~~Yd~~t~~W~~i~ 226 (519)
..++.+|+.++..+.+.
T Consensus 374 ------~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 374 ------FNIARQDLETGAMQVLT 390 (448)
T ss_pred ------eEEEEEECCCCCeEEcc
Confidence 24566788888887765
No 68
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.43 E-value=7.8 Score=40.87 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=95.7
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..+|++|+.+++...+... +.. .......-++ +|++....++ ..++|++|+.++...++.. .+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---------~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~---~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---------PGM-TFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD---SP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecC---------CCc-ccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC---CC
Confidence 6799999999888776522 111 1111222234 5544433222 2579999999988777753 11
Q ss_pred CCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (519)
. .......-.++ +|++.....+ ...+|++|..+.+.+.+.. . ..........-++ .|++.. .....
T Consensus 290 ~--~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~---~-~~~~~~~~~SpdG~~ia~~~-~~~~~-- 357 (435)
T PRK05137 290 A--IDTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISF---G-GGRYSTPVWSPRGDLIAFTK-QGGGQ-- 357 (435)
T ss_pred C--ccCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeec---C-CCcccCeEECCCCCEEEEEE-cCCCc--
Confidence 1 11122233344 4443332222 2469999998888887752 1 1122222222244 454433 21111
Q ss_pred ccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEc
Q 010034 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v 282 (519)
..+..+|+.+.....+... . ........-+++.+++....... .....+|++|+....-+.+
T Consensus 358 -------~~i~~~d~~~~~~~~lt~~---~--~~~~p~~spDG~~i~~~~~~~~~------~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 358 -------FSIGVMKPDGSGERILTSG---F--LVEGPTWAPNGRVIMFFRQTPGS------GGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred -------eEEEEEECCCCceEeccCC---C--CCCCCeECCCCCEEEEEEccCCC------CCcceEEEEECCCCceEEc
Confidence 2455667776666555421 1 11112223345544444332211 0124689999887666665
Q ss_pred cc
Q 010034 283 PI 284 (519)
Q Consensus 283 ~~ 284 (519)
..
T Consensus 420 ~~ 421 (435)
T PRK05137 420 PT 421 (435)
T ss_pred cC
Confidence 53
No 69
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.33 E-value=7.7 Score=40.37 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..++++|+.+++-..+... +..... ....-++ .|++.....+ ..+++.+|+.++....+... +
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---------~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~---~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---------PGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNG---P 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC---------CCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCC---C
Confidence 5688899988766655421 111111 1222233 5655433222 24699999999887777531 1
Q ss_pred CCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEE-EeCCEEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTAT-MVEKRLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~ 202 (519)
.. ........++ +|++.....+ ...+|.+|..+.++..+...+ ....... .-+++.+++......
T Consensus 278 ~~--~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~--- 344 (417)
T TIGR02800 278 GI--DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG--- 344 (417)
T ss_pred CC--CCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCC---
Confidence 11 1111222233 5555443332 247999999999888776322 1112222 225555555543321
Q ss_pred ccccccccccccccCCCCceEEec
Q 010034 203 MGDLWALKGLIEEENETPGWTQLK 226 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~ 226 (519)
...++.+|+.+..++.+.
T Consensus 345 ------~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ------GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ------ceEEEEEeCCCCCeEEcc
Confidence 134667788887776665
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.15 E-value=5.6 Score=38.16 Aligned_cols=199 Identities=11% Similarity=0.045 Sum_probs=107.1
Q ss_pred CcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe--CCeEEEEccccCCcCCCcEEEE
Q 010034 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVL 107 (519)
Q Consensus 30 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~dv~~y 107 (519)
++.+|...- .-..++++|+.++.-..+.. +. -.+++.. ++.+|+... ....++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----------~~---~~G~~~~~~~g~l~v~~~-------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----------PG---PNGMAFDRPDGRLYVADS-------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----------SS---EEEEEEECTTSEEEEEET-------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----------CC---CceEEEEccCCEEEEEEc-------CceEEE
Confidence 467777643 23579999999987665542 22 3344444 678887754 235677
Q ss_pred ECCCCeEEEEeeCC--CCCCCCCccEEEEECCcEEEEEecCC-CCcCC--CcEEEEECCCCcEEEeccCCCCCCcccCee
Q 010034 108 DTDIWQWSELTSFG--DLPSPRDFAAASAIGNRKIVMYGGWD-GKKWL--SDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (519)
Q Consensus 108 d~~t~~W~~~~~~g--~~P~~r~~~~~~~~~~~~iyv~GG~~-~~~~~--~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~ 182 (519)
|+.+++++.+.... ..+..+ -...++..+|.+|+---.. ..... ..++++++. .+.+.+.. .+ ..-..
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~---~~pNG 138 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GL---GFPNG 138 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EE---SSEEE
T ss_pred ecCCCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cc---ccccc
Confidence 99999999887521 112223 2344555677888753221 11112 569999999 66665541 11 11133
Q ss_pred EEEe--CCEEEEEcccCCCCCcccccccccccccccCCC--CceEEecCCCCCCCC-cceeEEEE-eCCEEEEEeccCCC
Q 010034 183 ATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENET--PGWTQLKLPGQAPSS-RCGHTITS-GGHYLLLFGGHGTG 256 (519)
Q Consensus 183 ~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t--~~W~~i~~~g~~P~~-r~~~s~~~-~~~~iyv~GG~~~~ 256 (519)
++.. ++.||+.--. -..+++|+++. ..+.....-...+.. ..--.+++ .++.||+..-
T Consensus 139 i~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~---- 202 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW---- 202 (246)
T ss_dssp EEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----
T ss_pred eEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----
Confidence 4444 3467774221 13456667653 334322211012222 12234444 5678998642
Q ss_pred CCcccccceeCcEEEEEcCCCeEEEccc
Q 010034 257 GWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
..+.|++||++...-..+..
T Consensus 203 --------~~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 203 --------GGGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp --------TTTEEEEEETTSCEEEEEE-
T ss_pred --------CCCEEEEECCCccEEEEEcC
Confidence 12579999999776666654
No 71
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.15 E-value=3.1 Score=38.71 Aligned_cols=153 Identities=13% Similarity=0.173 Sum_probs=77.1
Q ss_pred eEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcE--EeeeecCCCCCCCCCCCCcceeEEEEe-C-CeEEEEccccCC
Q 010034 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW--FQPECTGNGSNGQVGPGPRAFHIAVAI-D-CHMFIFGGRFGS 98 (519)
Q Consensus 23 h~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~~l~~~~~~~~~~~~p~~R~~h~~~~~-~-~~iyv~GG~~~~ 98 (519)
-+++... +.+|+|-| +.+|+++...... ..+... -+..| ..-.++... + +++|+|-|
T Consensus 10 DA~~~~~-g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~-----w~~~p--~~IDAa~~~~~~~~~yfFkg---- 70 (194)
T cd00094 10 DAVTTLR-GELYFFKG-------RYFWRLSPGKPPGSPFLISSF-----WPSLP--SPVDAAFERPDTGKIYFFKG---- 70 (194)
T ss_pred CeEEEeC-CEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh-----CCCCC--CCccEEEEECCCCEEEEECC----
Confidence 3444455 79999987 4578888652211 112110 01122 222333333 3 78999977
Q ss_pred cCCCcEEEEECCCCeEE---EEeeCCCCCC--CCCccEEEEEC-CcEEEEEecCCCCcCCCcEEEEECCCCcEEEec---
Q 010034 99 RRLGDFWVLDTDIWQWS---ELTSFGDLPS--PRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP--- 169 (519)
Q Consensus 99 ~~~~dv~~yd~~t~~W~---~~~~~g~~P~--~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~--- 169 (519)
+.+|+||..+..+. .+... ..|. .... ++.... ++++|+|-| +..|+||..+++...--
T Consensus 71 ---~~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~ 138 (194)
T cd00094 71 ---DKYWVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKL 138 (194)
T ss_pred ---CEEEEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcc
Confidence 45888887652221 11110 1222 1122 222233 679999987 34788887665542110
Q ss_pred cC---CCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCc
Q 010034 170 VT---GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG 221 (519)
Q Consensus 170 ~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~ 221 (519)
.. ..+|.. ...+....++++|+|-| +..++||..+.+
T Consensus 139 i~~~w~g~p~~-idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~~ 178 (194)
T cd00094 139 IETDFPGVPDK-VDAAFRWLDGYYYFFKG--------------DQYWRFDPRSKE 178 (194)
T ss_pred hhhcCCCcCCC-cceeEEeCCCcEEEEEC--------------CEEEEEeCccce
Confidence 00 012221 22333333488999977 345566776655
No 72
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.03 E-value=9.7 Score=40.42 Aligned_cols=148 Identities=15% Similarity=0.158 Sum_probs=79.8
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..+|++|+.+++-+.+.. .+.. ..+.+.-.++ .|++....++ ..++|.+|+.+++.+++... .. ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~--~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~---~~-~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGI--NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRH---RA-IDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCC--cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccC---CC-Ccc
Confidence 569999999987776652 2221 1222333333 5655543332 25799999999998887621 11 111
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCc
Q 010034 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (519)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~ 259 (519)
.....-++ .|++.....+. ..++.+|+.+++++.+...+... .. ....-+++.+++.+....
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~----------~~Iy~~dl~~g~~~~Lt~~g~~~---~~-~~~SpDG~~l~~~~~~~g--- 372 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGK----------PQIYRVNLASGKVSRLTFEGEQN---LG-GSITPDGRSMIMVNRTNG--- 372 (448)
T ss_pred ceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEEecCCCCC---cC-eeECCCCCEEEEEEecCC---
Confidence 11222244 45544322111 34566788889998886322111 11 222334444444333221
Q ss_pred ccccceeCcEEEEEcCCCeEEEccc
Q 010034 260 SRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 260 ~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
...++++|+.+...+.+..
T Consensus 373 ------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 ------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ------ceEEEEEECCCCCeEEccC
Confidence 2468999999888877654
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.81 E-value=1.1 Score=45.99 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=95.7
Q ss_pred CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCcc-EEEEECCcE-EEEEecCCCCcCCCcEEEEECCCCc
Q 010034 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFA-AASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 87 ~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~-~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
..+.+.+|.++.- .++..|-.++. .+. .+...++-- .++...+|. ..+++|+.. =+|.||..+.+
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDle~ak 291 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDLETAK 291 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccce-----EEEEeeccccc
Confidence 3688888987642 35666666665 232 122222222 223334444 666676543 38999999999
Q ss_pred EEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeC
Q 010034 165 WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGG 244 (519)
Q Consensus 165 W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~ 244 (519)
-+++.+...++.+-...-.+...+.++++-|..+. ++.....++.|..-- .++......+....+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~------------I~lLhakT~eli~s~---KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH------------IHLLHAKTKELITSF---KIEGVVSDFTFSSDS 356 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCce------------EEeehhhhhhhhhee---eeccEEeeEEEecCC
Confidence 99997544444322222334455666666665442 122244566664332 223223333334445
Q ss_pred CEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEE-EeCCEEEEEccCCCC
Q 010034 245 HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMT-CLGSLYLLFGGFDGK 313 (519)
Q Consensus 245 ~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v-~~~~~iyv~GG~~~~ 313 (519)
..|++.||. ..||++|+.++.-...-.. ...-.+-+.+ ..++.++..|-..|.
T Consensus 357 k~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 357 KELLASGGT-------------GEVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred cEEEEEcCC-------------ceEEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcce
Confidence 577777764 3589999988743221111 0011223333 346666666655443
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.77 E-value=10 Score=39.80 Aligned_cols=183 Identities=12% Similarity=0.080 Sum_probs=93.3
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeC-CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..+|++|+.+++-..+.... . ........-+ .+|++..-..+ ..++|++|+.++..+++.. .+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~---------g-~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE---------G-LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HP 286 (430)
T ss_pred CEEEEEECCCCCEEEccCCC---------C-CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CC
Confidence 47999999988877764221 0 0111111223 34543322222 1579999999998887762 11
Q ss_pred CCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeC-CEEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE-KRLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 202 (519)
.. ........++ +|++.....+ ...+|.+|+.+++++.+...+ .........-+ +.|++..... ..
T Consensus 287 -~~-~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~-~~-- 354 (430)
T PRK00178 287 -AI-DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD-GN-- 354 (430)
T ss_pred -CC-cCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC-Cc--
Confidence 11 1222232333 5555443322 246999999999988876221 11111122223 4555543221 11
Q ss_pred ccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCC
Q 010034 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~ 277 (519)
..++.+|+.++..+.+... ... .. ....-+++.+++.....+ ...++..+....
T Consensus 355 -------~~l~~~dl~tg~~~~lt~~---~~~-~~-p~~spdg~~i~~~~~~~g---------~~~l~~~~~~g~ 408 (430)
T PRK00178 355 -------FHVAAQDLQRGSVRILTDT---SLD-ES-PSVAPNGTMLIYATRQQG---------RGVLMLVSINGR 408 (430)
T ss_pred -------eEEEEEECCCCCEEEccCC---CCC-CC-ceECCCCCEEEEEEecCC---------ceEEEEEECCCC
Confidence 2366679998888877632 111 11 123345565565543321 134677776543
No 75
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.65 E-value=11 Score=39.65 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=78.5
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..++++|+.+++-+.+.. .+. ...+...-.++ +|++....++ ..++|.+|+.+.+.+++. ..+.. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~~~-~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVT---NHPAI-DT 290 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcc---cCCCC-cC
Confidence 469999999988777652 221 11122333344 4544332222 257999999999988876 21111 11
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEE-eCCEEEEEeccCCCCC
Q 010034 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGW 258 (519)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~-~~~~iyv~GG~~~~~~ 258 (519)
.....-++ +|++.....+. ..++.+|+.++.++.+...+ ......... .++.|++... ...
T Consensus 291 ~~~~spDg~~i~f~s~~~g~----------~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~-~~~-- 353 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGK----------PQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHR-QDG-- 353 (430)
T ss_pred CeEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEc-cCC--
Confidence 11122244 55554322111 34566788888888776322 111112222 3345544432 211
Q ss_pred cccccceeCcEEEEEcCCCeEEEccc
Q 010034 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
...++++|+.+...+.+..
T Consensus 354 -------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -------ceEEEEEECCCCCEEEccC
Confidence 1359999999988887764
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.63 E-value=11 Score=39.73 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeC-CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..++++|+.+++-..+... +. ........-+ .+|++.....+ ..+++++|+.+++-.++.. .+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---------~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~---~~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---------RG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTN---HF 291 (433)
T ss_pred cEEEEEECCCCCEEEeccC---------CC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECcc---CC
Confidence 5689999988877666422 11 1111122223 35554432222 1479999999988776652 11
Q ss_pred CCCCccEEEEECCcE-EEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEE-eC-CEEEEEcccCCCCC
Q 010034 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM-VE-KRLLIYGGRGGGGP 201 (519)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~ 201 (519)
. .....+...+++ |++.....+ ...+|.+|..+++.+.+...+ ........ -+ +.|++..+. ...
T Consensus 292 ~--~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~- 359 (433)
T PRK04922 292 G--IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GGQ- 359 (433)
T ss_pred C--CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CCc-
Confidence 1 112233334444 444433332 246999999999888876322 11122222 23 455554432 111
Q ss_pred cccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEE
Q 010034 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (519)
Q Consensus 202 ~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~ 281 (519)
..+..+|+.++....+... +.. . ......+++.+++.....+ ...++.+|+....=.+
T Consensus 360 --------~~I~v~d~~~g~~~~Lt~~---~~~-~-~p~~spdG~~i~~~s~~~g---------~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 360 --------YRIAVMDLSTGSVRTLTPG---SLD-E-SPSFAPNGSMVLYATREGG---------RGVLAAVSTDGRVRQR 417 (433)
T ss_pred --------eeEEEEECCCCCeEECCCC---CCC-C-CceECCCCCEEEEEEecCC---------ceEEEEEECCCCceEE
Confidence 2456678888888776521 111 1 1123345555555543321 2568888886543333
Q ss_pred c
Q 010034 282 L 282 (519)
Q Consensus 282 v 282 (519)
+
T Consensus 418 l 418 (433)
T PRK04922 418 L 418 (433)
T ss_pred c
Confidence 3
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.62 E-value=11 Score=39.72 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..++++|+.+++...+.. .+... .+...-.++ +|++....++ ..++|.+|+.+..-..+. ..+.. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~--~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt---~~~~~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMT--FAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLT---DSPAI-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcc--cCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEcc---CCCCc-cC
Confidence 579999999998887763 22221 222232344 4544433322 357999999999887775 22211 11
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCC-EEEEEeccCCCCC
Q 010034 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGGW 258 (519)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~-~iyv~GG~~~~~~ 258 (519)
.....-++ +|++.....+. ..++.+|..+...+.+... . .........-++ .|++.. ....
T Consensus 294 ~~~~spDG~~i~f~s~~~g~----------~~Iy~~d~~g~~~~~lt~~---~-~~~~~~~~SpdG~~ia~~~-~~~~-- 356 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGS----------PQLYVMNADGSNPRRISFG---G-GRYSTPVWSPRGDLIAFTK-QGGG-- 356 (435)
T ss_pred ceeEcCCCCEEEEEECCCCC----------CeEEEEECCCCCeEEeecC---C-CcccCeEECCCCCEEEEEE-cCCC--
Confidence 12222244 44433221111 2455668877777777521 1 112112222344 444433 2211
Q ss_pred cccccceeCcEEEEEcCCCeEEEcc
Q 010034 259 LSRYDIYYNDTIILDRLSAQWKRLP 283 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd~~t~~W~~v~ 283 (519)
...++++|+.+...+.+.
T Consensus 357 -------~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 -------QFSIGVMKPDGSGERILT 374 (435)
T ss_pred -------ceEEEEEECCCCceEecc
Confidence 146899998777665554
No 78
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.15 E-value=7.8 Score=36.57 Aligned_cols=196 Identities=16% Similarity=0.248 Sum_probs=104.9
Q ss_pred CcEEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeE--EEEeCCeEEEEccccCCcCCCcEEEEECCCCe--EEEEee
Q 010034 46 SDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHI--AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTS 119 (519)
Q Consensus 46 ~~~~~yd~~~~--~W~~l~~~~~~~~~~~~p~~R~~h~--~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~--W~~~~~ 119 (519)
..+.++|+.++ .|+.-. ..+..... .+..++.+|+..+ ...++++|+.+++ |+.-.
T Consensus 3 g~l~~~d~~tG~~~W~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~- 64 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-----------GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL- 64 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-----------SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-
T ss_pred CEEEEEECCCCCEEEEEEC-----------CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-
Confidence 34677888765 476631 11122222 3447888888832 2469999998875 55432
Q ss_pred CCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EE-EeccCCCCCCcccCeeEEEeCCEEEEEccc
Q 010034 120 FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WM-QLPVTGSVPPPRCGHTATMVEKRLLIYGGR 196 (519)
Q Consensus 120 ~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~-~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (519)
+.+. ....... ++.+|+..+. +.++.+|..+.+ |+ ........+ .+........++.+|+....
T Consensus 65 ----~~~~-~~~~~~~-~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 65 ----PGPI-SGAPVVD-GGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp ----SSCG-GSGEEEE-TTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETC
T ss_pred ----cccc-cceeeec-ccccccccce------eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEecc
Confidence 2221 1223344 4588887621 269999988765 88 443111111 22333444457777776531
Q ss_pred CCCCCcccccccccccccccCCCCc--eEEecCCCCCCCC--------cceeEEEEeCCEEEEEeccCCCCCccccccee
Q 010034 197 GGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSS--------RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYY 266 (519)
Q Consensus 197 ~~~~~~~~d~~~l~~v~~Yd~~t~~--W~~i~~~g~~P~~--------r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 266 (519)
..+..+|+++++ |+... ..|.. ......++.++.+|+..+..
T Consensus 132 -------------g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------------ 183 (238)
T PF13360_consen 132 -------------GKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------------ 183 (238)
T ss_dssp -------------SEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCTTEEEEECCTS------------
T ss_pred -------------CcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEECCEEEEEcCCC------------
Confidence 345567887664 66543 12211 11234445667888876532
Q ss_pred CcEEEEEcCCCe--EEEcccCCCCCCCCcceEEEEeCCEEEEEc
Q 010034 267 NDTIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (519)
Q Consensus 267 ~~v~~yd~~t~~--W~~v~~~~~~p~~R~~~~~v~~~~~iyv~G 308 (519)
.+..+|..+.. |+.. .. -........++.+|+..
T Consensus 184 -~~~~~d~~tg~~~w~~~-~~------~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 184 -RVVAVDLATGEKLWSKP-IS------GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp -SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE
T ss_pred -eEEEEECCCCCEEEEec-CC------CccCCceeeCCEEEEEe
Confidence 25666998886 8443 21 12222445567777766
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.48 E-value=1.2 Score=43.29 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccc
Q 010034 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEE 215 (519)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Y 215 (519)
.++.+|.--|..+. +.+.++|+.|++-.+.. ++|..-++-+++.++++||..-= .-...++|
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTW------------k~~~~f~y 115 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTW------------KEGTGFVY 115 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEES------------SSSEEEEE
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEe------------cCCeEEEE
Confidence 66799998887664 67899999999877666 78888889999999999999843 23556778
Q ss_pred cCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 216 ENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 216 d~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
|+++ .+.+. ..+.+.-+-+.+..+..+++--|. +.++.+||++.+
T Consensus 116 d~~t--l~~~~---~~~y~~EGWGLt~dg~~Li~SDGS-------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNT--LKKIG---TFPYPGEGWGLTSDGKRLIMSDGS-------------SRLYFLDPETFK 160 (264)
T ss_dssp ETTT--TEEEE---EEE-SSS--EEEECSSCEEEE-SS-------------SEEEEE-TTT-S
T ss_pred cccc--ceEEE---EEecCCcceEEEcCCCEEEEECCc-------------cceEEECCcccc
Confidence 8875 34444 344456777888888888887763 568899987654
No 80
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.08 E-value=10 Score=39.64 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=110.4
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEccccCCcC------C
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR------L 101 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~------~ 101 (519)
-++..++++=-.++.....++++|+.+++...-. .+.++... ++.. +++.+++........ .
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------ccccccce-EEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3455666654445555667999999998543211 12222222 4444 446666655544323 5
Q ss_pred CcEEEEECCCCeEE--EEeeCCCCCCCCC-ccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCC-----cEEEeccCCC
Q 010034 102 GDFWVLDTDIWQWS--ELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGS 173 (519)
Q Consensus 102 ~dv~~yd~~t~~W~--~~~~~g~~P~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~l~~~~~ 173 (519)
..+++..+.+..-. .+- ..+.... ...+..-.+++..++.-..+.. .+.++..|.... .|..+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~--- 274 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP--- 274 (414)
T ss_dssp EEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE---
T ss_pred cEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC---
Confidence 67899988876543 332 1223332 2233333444433333222222 478999999875 8888862
Q ss_pred CCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC---ceEEecCCCCCCCCcceeEEEEeCCEEEEE
Q 010034 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP---GWTQLKLPGQAPSSRCGHTITSGGHYLLLF 250 (519)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~---~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~ 250 (519)
+..-....+...++.+|+....+... ..+..+++... .|..+-. +......-..+...++.+++.
T Consensus 275 -~~~~~~~~v~~~~~~~yi~Tn~~a~~---------~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 -REDGVEYYVDHHGDRLYILTNDDAPN---------GRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SSSS-EEEEEEETTEEEEEE-TT-TT----------EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEE
T ss_pred -CCCceEEEEEccCCEEEEeeCCCCCC---------cEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEE
Confidence 11112233344588999887633322 23344455544 3774331 111212333445578888876
Q ss_pred eccCCCCCcccccceeCcEEEEEcC-CCeEEEcc
Q 010034 251 GGHGTGGWLSRYDIYYNDTIILDRL-SAQWKRLP 283 (519)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~-t~~W~~v~ 283 (519)
-=.+ ....+.++|+. +..-..++
T Consensus 343 ~~~~----------~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 343 YREN----------GSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp EEET----------TEEEEEEEETT-TEEEEEEE
T ss_pred EEEC----------CccEEEEEECCCCcEEeeec
Confidence 5322 35678999998 44333333
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.05 E-value=11 Score=35.44 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=54.2
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEE
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd 108 (519)
.++.++++|+.+ +.+.+||..++.-..... ............-+++.++.|+.+ ..+.+||
T Consensus 19 ~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~ 79 (289)
T cd00200 19 PDGKLLATGSGD-----GTIKVWDLETGELLRTLK---------GHTGPVRDVAASADGTYLASGSSD-----KTIRLWD 79 (289)
T ss_pred CCCCEEEEeecC-----cEEEEEEeeCCCcEEEEe---------cCCcceeEEEECCCCCEEEEEcCC-----CeEEEEE
Confidence 334666666642 467788887665211110 011111122222244566666653 3588899
Q ss_pred CCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEE
Q 010034 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (519)
Q Consensus 109 ~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (519)
..+++....-. .+ ...-.++....++.+++.|+.+ ..+..||+.+.+-.
T Consensus 80 ~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 128 (289)
T cd00200 80 LETGECVRTLT---GH-TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCL 128 (289)
T ss_pred cCcccceEEEe---cc-CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEE
Confidence 88753322211 11 1112233334444676666633 34888998865433
No 82
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.97 E-value=8.1 Score=38.00 Aligned_cols=159 Identities=21% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCCCCcc---eEEEEECCcEEEEEcCcCC-----------------CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 010034 16 VPQPRSG---HSAVNIGKSKVVVFGGLVD-----------------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (519)
Q Consensus 16 ~P~~R~g---h~~~~~~~~~lyv~GG~~~-----------------~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~ 75 (519)
-|.||+| |.|+..-++ ...||||-. ..-.+.++.||.++++=+.+=.. ..-.
T Consensus 29 G~~P~SGGDTYNAV~~vDd-~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-------sih~ 100 (339)
T PF09910_consen 29 GPPPTSGGDTYNAVEWVDD-FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-------SIHD 100 (339)
T ss_pred cCCCCCCCccceeeeeecc-eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-------ccCC
Confidence 4666766 666665544 555799842 02346899999998863332111 1122
Q ss_pred CcceeEEE---E---eCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCC
Q 010034 76 PRAFHIAV---A---IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK 149 (519)
Q Consensus 76 ~R~~h~~~---~---~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~ 149 (519)
++.-.+=+ + +++++++.- .++... --+|..|..++.-+.+.. -|... .+. +.+-.+|-+ .+..
T Consensus 101 ~~~WaGEVSdIlYdP~~D~LLlAR-~DGh~n-LGvy~ldr~~g~~~~L~~---~ps~K---G~~-~~D~a~F~i--~~~~ 169 (339)
T PF09910_consen 101 KTKWAGEVSDILYDPYEDRLLLAR-ADGHAN-LGVYSLDRRTGKAEKLSS---NPSLK---GTL-VHDYACFGI--NNFH 169 (339)
T ss_pred ccccccchhheeeCCCcCEEEEEe-cCCcce-eeeEEEcccCCceeeccC---CCCcC---ceE-eeeeEEEec--cccc
Confidence 22222211 2 256777653 233222 238888999998888873 33332 222 223133322 2233
Q ss_pred cCCCcEEEEECCCCcE--EEeccC----CCCCCcccCeeEEEeCCEEEEE
Q 010034 150 KWLSDVYVLDTISLEW--MQLPVT----GSVPPPRCGHTATMVEKRLLIY 193 (519)
Q Consensus 150 ~~~~~v~~yd~~t~~W--~~l~~~----~~~p~~r~~~~~~~~~~~lyv~ 193 (519)
.-.+.+.+||+.+++| +..... +.....|....++...+++|.|
T Consensus 170 ~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 170 KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred cCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 4467899999999999 554432 2222334555667777776655
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.89 E-value=5.5 Score=38.77 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=91.4
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEE
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd 108 (519)
+++.+|.--|.-+ -+.+.++|+.+++=.... +.|..-++-.++.++++||.+-=. ....++||
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~---------~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSV---------PLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYD 116 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEE---------E-TTT--EEEEEEETTEEEEEESS-----SSEEEEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEE---------ECCccccceeEEEECCEEEEEEec-----CCeEEEEc
Confidence 5567777776544 367889999998754433 356666788889999999988322 24589999
Q ss_pred CCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC
Q 010034 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (519)
Q Consensus 109 ~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~ 188 (519)
+.+- +.+. ..+.+..+-+++..++ .+++--| .+.++.+||.+.+=..- ......+..+..+|.
T Consensus 117 ~~tl--~~~~---~~~y~~EGWGLt~dg~-~Li~SDG------S~~L~~~dP~~f~~~~~-----i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 117 PNTL--KKIG---TFPYPGEGWGLTSDGK-RLIMSDG------SSRLYFLDPETFKEVRT-----IQVTDNGRPVSNLNE 179 (264)
T ss_dssp TTTT--EEEE---EEE-SSS--EEEECSS-CEEEE-S------SSEEEEE-TTT-SEEEE-----EE-EETTEE---EEE
T ss_pred cccc--eEEE---EEecCCcceEEEcCCC-EEEEECC------ccceEEECCcccceEEE-----EEEEECCEECCCcEe
Confidence 9875 3443 2344457788886654 7777666 35699999987653321 111122222223333
Q ss_pred EEEEEcccCCCCCcccccccccccccccCCCCceEEe
Q 010034 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL 225 (519)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i 225 (519)
--|+ +| ..+..+|.-+.+.+-||.++.-...
T Consensus 180 LE~i-~G-----~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 180 LEYI-NG-----KIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEE-TT-----EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EEEE-cC-----EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 3333 33 2445567778888889999987664
No 84
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.62 E-value=12 Score=35.11 Aligned_cols=107 Identities=9% Similarity=0.019 Sum_probs=50.8
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEccccCCcCCCcEEEE
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~dv~~y 107 (519)
.++..+++|+. ...+.+||+.+++....-. .....-.++... ++++++.|+.+ ..+.+|
T Consensus 61 ~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~ 120 (289)
T cd00200 61 ADGTYLASGSS-----DKTIRLWDLETGECVRTLT----------GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVW 120 (289)
T ss_pred CCCCEEEEEcC-----CCeEEEEEcCcccceEEEe----------ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEE
Confidence 33445555554 2467888887753222110 111112223333 34566665533 358899
Q ss_pred ECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 108 d~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
|+.+.+-...-. .....-.+++...++.+++.|+.++ .+..||+.+.+
T Consensus 121 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~ 168 (289)
T cd00200 121 DVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGK 168 (289)
T ss_pred ECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccc
Confidence 998654333221 1111122333334345555554233 48889887543
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.44 E-value=2.5 Score=36.40 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCccccccccccccccc
Q 010034 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (519)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd 216 (519)
||-+|-..-. .....+.+.+||+.+.+|+.+..............++.++|+|-++.-........-++|.++ |
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-----D 78 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-----D 78 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-----c
Confidence 4577766554 333456789999999999999732112344556677778999888765443323446778875 6
Q ss_pred CCCCceEEec
Q 010034 217 NETPGWTQLK 226 (519)
Q Consensus 217 ~~t~~W~~i~ 226 (519)
....+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6778999875
No 86
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.25 E-value=22 Score=37.47 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=86.1
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..++++|+.+++-+.+.. .+.. ..+.+.-.++ +|++.....+ ..++|.+|+.+.+.+++. ..+.. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~--~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt---~~~~~-~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH--NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVT---DGRSN-NT 290 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC--cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEcc---CCCCC-cC
Confidence 468999999887766652 2221 1122333344 4555433222 235999999999888775 22111 11
Q ss_pred eeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcc
Q 010034 181 HTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLS 260 (519)
Q Consensus 181 ~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~ 260 (519)
.....-+++.+++....... ..++.+|+.+...+++...+ .........-+++.+++.+....
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~---------~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---- 353 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGR---------PQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---- 353 (429)
T ss_pred ceEECCCCCEEEEEeCCCCC---------ceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC----
Confidence 11112244433333211111 23455577777777665221 11111222334444444332221
Q ss_pred cccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCC
Q 010034 261 RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (519)
Q Consensus 261 ~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~ 312 (519)
...++++|+.+..++.+..... .......-+++.+++.+.++
T Consensus 354 -----~~~I~~~dl~~g~~~~Lt~~~~-----~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 354 -----QQHIAKQDLATGGVQVLTDTFL-----DETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred -----CceEEEEECCCCCeEEeCCCCC-----CCCceECCCCCEEEEEEcCC
Confidence 1468999999998888764211 11112234566666666544
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.15 E-value=22 Score=37.40 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=77.5
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..++++|+.+++-..+.. .+.. ..+...-.++ +|++....++ ..+++.+|+.+++-+++.. .+.. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~--~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~---~~~~--~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGI--NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTN---HFGI--D 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCC--ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECcc---CCCC--c
Confidence 569999999988777762 2221 1122222333 5554433322 2579999999998777652 1111 1
Q ss_pred eeEEEe-CC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCC
Q 010034 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (519)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~ 258 (519)
...... ++ +|++.....+. ..++.+|..+++.+.+...+... ...+....+..|++..+ ..+
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~----------~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~-~~~-- 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGR----------PQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHG-SGG-- 358 (433)
T ss_pred cceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEEC-CCC--
Confidence 112222 44 44444322211 23556688888888776322111 11122223445555443 211
Q ss_pred cccccceeCcEEEEEcCCCeEEEccc
Q 010034 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
...++++|+.+...+.+..
T Consensus 359 -------~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 -------QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred -------ceeEEEEECCCCCeEECCC
Confidence 1378999998888877654
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.28 E-value=31 Score=36.09 Aligned_cols=219 Identities=18% Similarity=0.143 Sum_probs=107.0
Q ss_pred EEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcE-EeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCc
Q 010034 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (519)
Q Consensus 25 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~d 103 (519)
+..-.||+++..|+.. ..+-+||..+..- ..+.. ..-|. ..-..+..++.++++|+-+. .
T Consensus 74 ~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~a-------h~apv--~~~~f~~~d~t~l~s~sDd~-----v 134 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYA-------HQAPV--HVTKFSPQDNTMLVSGSDDK-----V 134 (487)
T ss_pred EEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhh-------ccCce--eEEEecccCCeEEEecCCCc-----e
Confidence 3333567888888754 4577889555211 11110 01111 11223346788999988543 2
Q ss_pred EEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCC-cEEEeccCCCCCCcccCee
Q 010034 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLPVTGSVPPPRCGHT 182 (519)
Q Consensus 104 v~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~l~~~~~~p~~r~~~~ 182 (519)
+-.+|..+.. .+....+.--.-|. ..+.-.++.|++-||+++. +-.||+.+. .|..-- +.-.|. -.
T Consensus 135 ~k~~d~s~a~-v~~~l~~htDYVR~--g~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~el---nhg~pV--e~ 201 (487)
T KOG0310|consen 135 VKYWDLSTAY-VQAELSGHTDYVRC--GDISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVVEL---NHGCPV--ES 201 (487)
T ss_pred EEEEEcCCcE-EEEEecCCcceeEe--eccccCCCeEEEecCCCce-----EEEEEeccCCceeEEe---cCCCce--ee
Confidence 3445555544 23332222222222 2222235589999999886 667887766 333221 111222 12
Q ss_pred EEEe-C-CEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCccee-----EEEE-eCCEEEEEeccC
Q 010034 183 ATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH-----TITS-GGHYLLLFGGHG 254 (519)
Q Consensus 183 ~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~-----s~~~-~~~~iyv~GG~~ 254 (519)
++.+ + ..|...|| +.+-+.|..++ +.++..+..| ++.. .++.-.+.||.+
T Consensus 202 vl~lpsgs~iasAgG--------------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 202 VLALPSGSLIASAGG--------------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred EEEcCCCCEEEEcCC--------------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 3333 3 34555565 22223333221 2333333323 1111 234566667765
Q ss_pred CCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCCC
Q 010034 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK 313 (519)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~ 313 (519)
. .+-+|| +..|+-+-.+.. |.|--.. ++.-+++..++|..+|-
T Consensus 260 ~------------~VKVfd--~t~~Kvv~s~~~-~~pvLsi-avs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 260 R------------HVKVFD--TTNYKVVHSWKY-PGPVLSI-AVSPDDQTVVIGMSNGL 302 (487)
T ss_pred c------------ceEEEE--ccceEEEEeeec-ccceeeE-EecCCCceEEEecccce
Confidence 3 467888 455666655433 2222222 22337888899987763
No 89
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.22 E-value=32 Score=36.19 Aligned_cols=151 Identities=14% Similarity=0.190 Sum_probs=83.5
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
.++|++|+.+++=+.+.. .+ .. ..+...-.++ +|++.-..++ ..++|.+|..+..++++. ..+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT---~~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQIT---NYPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-Cc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcc---cCCC--cc
Confidence 379999999987777763 11 11 1112222333 5554433322 367999999999999886 2222 11
Q ss_pred eeEEEe--CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCC-EEEEEeccCCCC
Q 010034 181 HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGG 257 (519)
Q Consensus 181 ~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~-~iyv~GG~~~~~ 257 (519)
...... +++|++.....+ ...++.+|.++++.+++...+. ... ...-++ .|..........
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcc
Confidence 111222 346776654321 1356667888888887764322 112 233344 444443322111
Q ss_pred CcccccceeCcEEEEEcCCCeEEEcccC
Q 010034 258 WLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (519)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 285 (519)
......+++++|+.+..++.+...
T Consensus 344 ----~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 344 ----FGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred ----cCCCCcEEEEEECCCCCeEECCCC
Confidence 001235899999999999888764
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.03 E-value=23 Score=34.24 Aligned_cols=102 Identities=17% Similarity=0.067 Sum_probs=54.3
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-C-CeEEEEccccCCcCCCcEEEEEC
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D-CHMFIFGGRFGSRRLGDFWVLDT 109 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~-~~iyv~GG~~~~~~~~dv~~yd~ 109 (519)
.+|+.++.+ +.+.+||+.+++-...-.. ...++ .++.. + ..+|+.++.. +.+.+||+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~--------~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~ 60 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV--------GQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDL 60 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC--------CCCCC---ceEECCCCCEEEEEECCC-----CeEEEEEC
Confidence 466666643 4688899987764332211 11122 22222 3 3567776532 35889999
Q ss_pred CCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 110 DIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 110 ~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
.+++....-. ..+.+ ...+...++ .+|+.++.+ +.+..||+.+.+
T Consensus 61 ~~~~~~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 61 ATGEVIGTLP--SGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred CCCcEEEecc--CCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 9877654221 11111 233333333 566665432 358899998764
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.80 E-value=23 Score=33.92 Aligned_cols=164 Identities=11% Similarity=0.056 Sum_probs=87.3
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccC-CcCC--CcEE
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG-SRRL--GDFW 105 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~--~dv~ 105 (519)
.++.+|+... ..+.++|+.+++++.+..... ...+..+..-.++.-++++|+---... .... ..++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 4577887665 335677999999988875411 011333444444445678887532211 1111 5699
Q ss_pred EEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCc--EEEeccCCCCCCcc-cCe
Q 010034 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR-CGH 181 (519)
Q Consensus 106 ~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~p~~r-~~~ 181 (519)
++++. ++...+.. .+.. -.+.+...++ .+|+.-- ....+++|++.... +.....-...+... .--
T Consensus 119 ~~~~~-~~~~~~~~--~~~~---pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 119 RIDPD-GKVTVVAD--GLGF---PNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEETT-SEEEEEEE--EESS---EEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred EECCC-CeEEEEec--Cccc---ccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 99999 77766653 1222 2345555444 5776422 23459999886433 33322110222221 122
Q ss_pred eEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEec
Q 010034 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (519)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~ 226 (519)
.+++- +++|||..-. -..+.+||++...-..+.
T Consensus 188 G~~vD~~G~l~va~~~------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWG------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBTTS-EEEEEET------------TTEEEEEETTSCEEEEEE
T ss_pred cceEcCCCCEEEEEcC------------CCEEEEECCCccEEEEEc
Confidence 33443 6799987321 156778899966666676
No 92
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.56 E-value=28 Score=34.78 Aligned_cols=240 Identities=13% Similarity=0.127 Sum_probs=103.0
Q ss_pred eeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcC--CCcEEeeeecCCCCCCCCCCCCccee
Q 010034 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGPGPRAFH 80 (519)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~p~~R~~h 80 (519)
.|+++. .|....-..+...++.+-|++|-.. . .|-.. -.+|....... +.+.....+
T Consensus 7 ~W~~v~-------l~t~~~l~dV~F~d~~~G~~VG~~g-------~-il~T~DGG~tW~~~~~~~------~~~~~~~l~ 65 (302)
T PF14870_consen 7 SWQQVS-------LPTDKPLLDVAFVDPNHGWAVGAYG-------T-ILKTTDGGKTWQPVSLDL------DNPFDYHLN 65 (302)
T ss_dssp -EEEEE--------S-SS-EEEEEESSSS-EEEEETTT-------E-EEEESSTTSS-EE-----------S-----EEE
T ss_pred CcEEee-------cCCCCceEEEEEecCCEEEEEecCC-------E-EEEECCCCccccccccCC------CccceeeEE
Confidence 688886 4444444555555667888888532 2 23332 24799876321 111112233
Q ss_pred EEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEEC
Q 010034 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (519)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 160 (519)
++...+++.|+.|-. + -+..-.=.-.+|++++.. .+.+-..+....++++.++++|.. ..+++=.=
T Consensus 66 ~I~f~~~~g~ivG~~-g-----~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~D 131 (302)
T PF14870_consen 66 SISFDGNEGWIVGEP-G-----LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTD 131 (302)
T ss_dssp EEEEETTEEEEEEET-T-----EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT--------EEEESS
T ss_pred EEEecCCceEEEcCC-c-----eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCC
Confidence 444567889988642 1 122222245689998742 233334456666667788888743 23555444
Q ss_pred CCCcEEEeccCCCCCCcccCeeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeE
Q 010034 161 ISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHT 239 (519)
Q Consensus 161 ~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s 239 (519)
.-.+|+.+... .. -.-..+... ++++++++-.. +-+...|+-...|+... .+..|.-.+
T Consensus 132 gG~tW~~~~~~---~~-gs~~~~~r~~dG~~vavs~~G------------~~~~s~~~G~~~w~~~~----r~~~~riq~ 191 (302)
T PF14870_consen 132 GGKTWQAVVSE---TS-GSINDITRSSDGRYVAVSSRG------------NFYSSWDPGQTTWQPHN----RNSSRRIQS 191 (302)
T ss_dssp TTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS------------SEEEEE-TT-SS-EEEE------SSS-EEE
T ss_pred CCCCeeEcccC---Cc-ceeEeEEECCCCcEEEEECcc------------cEEEEecCCCccceEEc----cCccceehh
Confidence 56689988621 11 111122223 55655555322 11223477788899987 344454445
Q ss_pred EEE-eCCEEEEEeccCCCCCcccccceeCcEEEEE--cCCCeEEEcccCCCCCCCCcc-eEEEEe-CCEEEEEccCCC
Q 010034 240 ITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILD--RLSAQWKRLPIGNEPPPARAY-HSMTCL-GSLYLLFGGFDG 312 (519)
Q Consensus 240 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd--~~t~~W~~v~~~~~~p~~R~~-~~~v~~-~~~iyv~GG~~~ 312 (519)
+.. -++.+++.. ... .+..=+ -...+|.+.... .+...++ ..++.. ++.+++.||...
T Consensus 192 ~gf~~~~~lw~~~-~Gg------------~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 192 MGFSPDGNLWMLA-RGG------------QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEE-TTS-EEEEE-TTT------------EEEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred ceecCCCCEEEEe-CCc------------EEEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCcc
Confidence 544 566777765 111 122222 245678773221 1112222 222333 589999998653
No 93
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.46 E-value=41 Score=36.53 Aligned_cols=125 Identities=16% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCcEEEEEcCcCCCccCCcEEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEE
Q 010034 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWV 106 (519)
Q Consensus 29 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~ 106 (519)
.+++||+.... +.++++|..++ .|+.-...... ..+...........++.+++||+... + ..++.
T Consensus 68 ~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~-~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l~A 134 (527)
T TIGR03075 68 VDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDD-VIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARLVA 134 (527)
T ss_pred ECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcc-cccccccccccccceEECCEEEEEcC-C-----CEEEE
Confidence 34788885542 35899998875 58764311000 00000011112234556778886422 2 35899
Q ss_pred EECCCCe--EEEEeeCCCCCCCC-CccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc--EEEec
Q 010034 107 LDTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (519)
Q Consensus 107 yd~~t~~--W~~~~~~g~~P~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~ 169 (519)
+|..|++ |+.-.. +..... ...+.++. ++.||+-...........++.||..|.+ |+.-.
T Consensus 135 LDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 135 LDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 9998874 765321 122111 11223334 4477664322111233468889988875 76543
No 94
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.22 E-value=25 Score=36.64 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=98.1
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcC------CCcEEEEE
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW------LSDVYVLD 159 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~------~~~v~~yd 159 (519)
+++.++++=..++.....++++|+++++...-. ++..... .++-..+++.+++...+.... ...++++.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----IENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----EEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----ccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 567666665444444557999999999654322 2233222 245555555655655544323 67899999
Q ss_pred CCCCcEE--EeccCCCCCCccc-CeeE-EEeCCE-EEEEcccCCCCCcccccccccccccccCCCC-----ceEEecCCC
Q 010034 160 TISLEWM--QLPVTGSVPPPRC-GHTA-TMVEKR-LLIYGGRGGGGPIMGDLWALKGLIEEENETP-----GWTQLKLPG 229 (519)
Q Consensus 160 ~~t~~W~--~l~~~~~~p~~r~-~~~~-~~~~~~-lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~-----~W~~i~~~g 229 (519)
+.+..-. .+- ..+.... ...+ ..-+++ |+|.-..... . +.++..|.... .|..+..
T Consensus 209 ~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~------s~v~~~d~~~~~~~~~~~~~l~~-- 274 (414)
T PF02897_consen 209 LGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---E------SEVYLLDLDDGGSPDAKPKLLSP-- 274 (414)
T ss_dssp TTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---E------EEEEEEECCCTTTSS-SEEEEEE--
T ss_pred CCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---C------CeEEEEeccccCCCcCCcEEEeC--
Confidence 8887654 222 1122222 2222 222443 4433322211 1 33444466654 7888862
Q ss_pred CCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe---EEE-cccCCCCCCC-CcceEEEEeCCEE
Q 010034 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ---WKR-LPIGNEPPPA-RAYHSMTCLGSLY 304 (519)
Q Consensus 230 ~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~---W~~-v~~~~~~p~~-R~~~~~v~~~~~i 304 (519)
+.......+...++.+|+...... ....+..+++.... |.. +.. +.. ..--.+...++++
T Consensus 275 --~~~~~~~~v~~~~~~~yi~Tn~~a---------~~~~l~~~~l~~~~~~~~~~~l~~----~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 275 --REDGVEYYVDHHGDRLYILTNDDA---------PNGRLVAVDLADPSPAEWWTVLIP----EDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp --SSSS-EEEEEEETTEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEETTEE
T ss_pred --CCCceEEEEEccCCEEEEeeCCCC---------CCcEEEEecccccccccceeEEcC----CCCceeEEEEEEECCEE
Confidence 222333344456889999876432 34678899987665 664 332 112 2334445567888
Q ss_pred EEEcc
Q 010034 305 LLFGG 309 (519)
Q Consensus 305 yv~GG 309 (519)
++.-=
T Consensus 340 vl~~~ 344 (414)
T PF02897_consen 340 VLSYR 344 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 95
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.52 E-value=41 Score=35.38 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=74.3
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccC
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~ 180 (519)
..+|++|+.+++=..+.. .+. ...+.+.-.++ +|++....++ ..++|.+|..+...+++. ... ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLT---QSS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECC---CCC-CCCc
Confidence 469999999887666552 221 11222333344 5554443333 357999999888777765 211 1111
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCC-EEEEEeccCCCCC
Q 010034 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGGW 258 (519)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~-~iyv~GG~~~~~~ 258 (519)
.....-++ +|++.....+ . ..++.+|..+...+.+...+. ........-++ .|+.... ...
T Consensus 288 ~~~wSpDG~~l~f~s~~~g-~---------~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~-~~g-- 350 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG-A---------PQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISR-VGG-- 350 (427)
T ss_pred CeEEcCCCCEEEEEecCCC-C---------cEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEc-cCC--
Confidence 12222244 4544332211 1 234555777777777753221 11112223344 4444332 221
Q ss_pred cccccceeCcEEEEEcCCCeEEEccc
Q 010034 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 259 ~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
...++++|+.+...+.+..
T Consensus 351 -------~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 -------AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred -------cEEEEEEECCCCCeEEccC
Confidence 1368999998888777653
No 96
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.19 E-value=41 Score=35.09 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=60.3
Q ss_pred eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCC-----cEEEeccCCCCCCcccCeeEE-Ee
Q 010034 113 QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGSVPPPRCGHTAT-MV 186 (519)
Q Consensus 113 ~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~l~~~~~~p~~r~~~~~~-~~ 186 (519)
.|+.+. .|.++...++....++.++++|.... +..-+-.-. +|.++. .+..+.....+ ..
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G~------l~~S~d~G~~~~~~~f~~~~----~~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGGG------LYVSKGTGLTEEDFDFEEAD----IKSRGFGILDVGYR 336 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCce------EEEecCCCCcccccceeecc----cCCCCcceEEEEEc
Confidence 489887 55555556666666778988874322 222222222 455543 22233333333 33
Q ss_pred -CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEE-EeCCEEEEEec
Q 010034 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT-SGGHYLLLFGG 252 (519)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~-~~~~~iyv~GG 252 (519)
++.+++.|.... +..-.....+|+........+..-+ .+. ..+++.|+.|-
T Consensus 337 ~d~~~~a~G~~G~-------------v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 337 SKKEAWAAGGSGI-------------LLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcEEEEECCCc-------------EEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 568888886532 1112456678999763223333333 444 35578888884
No 97
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.12 E-value=11 Score=32.33 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=54.0
Q ss_pred cEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCc-CCCcEEEE-E
Q 010034 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVL-D 108 (519)
Q Consensus 31 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~-~~~dv~~y-d 108 (519)
|.+|-..-. .......+.+||..+.+|+.+.... ...........+.++|+|-++.-..... ..-++|+. |
T Consensus 6 Gvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~------~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 6 GVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPE------DPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred cEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeee------eeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 566665543 3445678999999999999886310 1234455666777889887765443322 23468888 5
Q ss_pred CCCCeEEEEee
Q 010034 109 TDIWQWSELTS 119 (519)
Q Consensus 109 ~~t~~W~~~~~ 119 (519)
..+++|++...
T Consensus 79 ~~k~~Wsk~~~ 89 (129)
T PF08268_consen 79 YEKQEWSKKHI 89 (129)
T ss_pred cccceEEEEEE
Confidence 67789997754
No 98
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.70 E-value=14 Score=37.19 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=78.7
Q ss_pred cEEEEEecC-C-CCc--CC-CcEEEEECCCC-----cEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccc
Q 010034 138 RKIVMYGGW-D-GKK--WL-SDVYVLDTISL-----EWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (519)
Q Consensus 138 ~~iyv~GG~-~-~~~--~~-~~v~~yd~~t~-----~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (519)
...+++|-. . +.. .. ..+..|++... +++.+. ....+-.-.+++.+++++++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g------------ 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG------------ 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec------------
Confidence 356666642 2 111 12 55888998885 666664 22222234566777888666655
Q ss_pred cccccccccCCCCc-eEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCC
Q 010034 208 ALKGLIEEENETPG-WTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN 286 (519)
Q Consensus 208 ~l~~v~~Yd~~t~~-W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 286 (519)
+.+..|+...+. +.... ....+-...++.+.++.|++ |-... .-.++.|+.+..+-..++...
T Consensus 107 --~~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD~~~----------sv~~~~~~~~~~~l~~va~d~ 170 (321)
T PF03178_consen 107 --NKLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GDAMK----------SVSLLRYDEENNKLILVARDY 170 (321)
T ss_dssp --TEEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EESSS----------SEEEEEEETTTE-EEEEEEES
T ss_pred --CEEEEEEccCcccchhhh---eecceEEEEEEeccccEEEE-EEccc----------CEEEEEEEccCCEEEEEEecC
Confidence 445667777777 77776 33333455566677886665 42211 123456677666677777643
Q ss_pred CCCCCCcceEEEEe-CCEEEEEccCC
Q 010034 287 EPPPARAYHSMTCL-GSLYLLFGGFD 311 (519)
Q Consensus 287 ~~p~~R~~~~~v~~-~~~iyv~GG~~ 311 (519)
.++...++..+ ++..++.+-..
T Consensus 171 ---~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 171 ---QPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ---S-BEEEEEEEE-SSSEEEEEETT
T ss_pred ---CCccEEEEEEecCCcEEEEEcCC
Confidence 37777777766 55555555433
No 99
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.05 E-value=49 Score=34.81 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeC-CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
.++|++|+.+++=+++.... .........-+ .+|.+.-...+ ..++|.+|..++.++++.. .+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----------GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----------CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CC
Confidence 48999999888766665211 11111122223 35554433222 2579999999999998873 22
Q ss_pred CCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (519)
. .......-.+| +||+.....+ ...+|++|+.+++.+++...+. .. ....-++ .|...... .....
T Consensus 277 ~--~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~-~~~~~ 344 (419)
T PRK04043 277 G--IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRE-TNNEF 344 (419)
T ss_pred C--ccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcC-CCccc
Confidence 2 12222333333 6766654432 3579999999999988863221 12 2233344 44443322 21110
Q ss_pred ccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEc
Q 010034 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v 282 (519)
... ...++.+|++++.++.+...+ ........-+++.+++-.... -...++.++.+.+.=..+
T Consensus 345 ~~~---~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~---------~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 345 GKN---TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG---------NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCC---CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC---------CcEEEEEEecCCCeeEEe
Confidence 000 134566789999998887321 112222334555444443222 124678888876654444
Q ss_pred cc
Q 010034 283 PI 284 (519)
Q Consensus 283 ~~ 284 (519)
+.
T Consensus 408 ~~ 409 (419)
T PRK04043 408 PL 409 (419)
T ss_pred ec
Confidence 43
No 100
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.96 E-value=40 Score=33.76 Aligned_cols=107 Identities=10% Similarity=-0.071 Sum_probs=51.4
Q ss_pred cEEEEEcCcCCCccCCcEEEEEcC-CCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEccccCCcCCCcEEEEE
Q 010034 31 SKVVVFGGLVDKRFLSDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLD 108 (519)
Q Consensus 31 ~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~dv~~yd 108 (519)
..||+.+. . .+.+..|++. ++.+..+.... .+ ....|.+..-++ .+|+.. +. .+.+.+||
T Consensus 47 ~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~-------~~-~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~ 108 (330)
T PRK11028 47 RHLYVGVR-P----EFRVLSYRIADDGALTFAAESP-------LP-GSPTHISTDHQGRFLFSAS-YN----ANCVSVSP 108 (330)
T ss_pred CEEEEEEC-C----CCcEEEEEECCCCceEEeeeec-------CC-CCceEEEECCCCCEEEEEE-cC----CCeEEEEE
Confidence 35666443 2 2567777776 45666554221 11 112333333344 466653 22 24577888
Q ss_pred CCCCe--EEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCC
Q 010034 109 TDIWQ--WSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL 163 (519)
Q Consensus 109 ~~t~~--W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (519)
++++. ...+. ..+....-|+++...++ .+|+.. . ..+.+.+||+.+.
T Consensus 109 ~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~~ 158 (330)
T PRK11028 109 LDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSDD 158 (330)
T ss_pred ECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECCC
Confidence 76421 11222 12222234555555444 566644 2 1245889998763
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.17 E-value=54 Score=34.52 Aligned_cols=190 Identities=12% Similarity=0.051 Sum_probs=94.2
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..++++|+.+++-+.+.... .. .......-++ +|++.....+ ..++|++|+.+++.+++.. .+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~---------~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP---------RH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GR 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC---------CC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CC
Confidence 56888998887766554221 10 1111222233 5555433222 1359999999988877753 11
Q ss_pred CCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCccc
Q 010034 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMG 204 (519)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 204 (519)
. .....+...+++.++|...... ...+|.+|+.+..-+++...+ .........-+++.+++.+.....
T Consensus 287 ~--~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g~---- 354 (429)
T PRK03629 287 S--NNTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGGQ---- 354 (429)
T ss_pred C--CcCceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCCC----
Confidence 1 1122333344443334322111 247899999988777775211 111112222244444443322211
Q ss_pred ccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEc
Q 010034 205 DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (519)
Q Consensus 205 d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v 282 (519)
..++.+|+.++.++.+.... ........-+++.+++.+.... ...+++.+.+...=..+
T Consensus 355 -----~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~---------~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 355 -----QHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM---------GSVLNLVSTDGRFKARL 413 (429)
T ss_pred -----ceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC---------ceEEEEEECCCCCeEEC
Confidence 23566788999888876221 1111223356666666654332 23466667654443444
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=84.68 E-value=56 Score=34.33 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEec
Q 010034 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG 145 (519)
Q Consensus 100 ~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG 145 (519)
...|+++++.+.++-+.++-.| .++.-.+....++.|.|.--
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfG----r~fT~VaG~~~dg~iiV~TD 146 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFG----RRFTRVAGWIPDGEIIVSTD 146 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEec----cccceeeccCCCCCEEEEec
Confidence 4568999999999999998533 22222233356677877654
No 103
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.40 E-value=83 Score=36.06 Aligned_cols=64 Identities=13% Similarity=-0.071 Sum_probs=35.3
Q ss_pred CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEE-CCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 87 ~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
+..++.|+.++ .+.++|..+++-...- ..... .-.+++.. .++.+++.||.++. +..||+.+..
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~~---~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~-----v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTEM---KEHEK-RVWSIDYSSADPTLLASGSDDGS-----VKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEEe---cCCCC-CEEEEEEcCCCCCEEEEEcCCCE-----EEEEECCCCc
Confidence 45555666543 4788898876543221 11111 12233332 24577888876653 7888887654
No 104
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.01 E-value=47 Score=32.21 Aligned_cols=157 Identities=15% Similarity=0.001 Sum_probs=84.0
Q ss_pred CCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEE-EEeeCCCCCCCCCc------------cEEEEECCcE
Q 010034 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDF------------AAASAIGNRK 139 (519)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~-~~~~~g~~P~~r~~------------~~~~~~~~~~ 139 (519)
+|-+-.+.+.++.++.+|.--. ..+.+..||+.+..-. ... +|.+... .-.++.++|
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~G- 134 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDENG- 134 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCCC-
Confidence 3444456666777887775532 3467999999998765 332 3333322 223444554
Q ss_pred EEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC
Q 010034 140 IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (519)
Q Consensus 140 iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t 219 (519)
|+|+=......-.--+-+.|+.+..-++.=.+ ..+.+..+. +.++-|.||++-..+... -.-.+.||..+
T Consensus 135 LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-~~~k~~~~n-aFmvCGvLY~~~s~~~~~--------~~I~yafDt~t 204 (250)
T PF02191_consen 135 LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-SYPKRSAGN-AFMVCGVLYATDSYDTRD--------TEIFYAFDTYT 204 (250)
T ss_pred EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-ccCchhhcc-eeeEeeEEEEEEECCCCC--------cEEEEEEECCC
Confidence 55553332221112245567665432222111 344444443 555678999987665432 13356789888
Q ss_pred CceEEecCCCCCCCCcceeEEEE---eCCEEEEEe
Q 010034 220 PGWTQLKLPGQAPSSRCGHTITS---GGHYLLLFG 251 (519)
Q Consensus 220 ~~W~~i~~~g~~P~~r~~~s~~~---~~~~iyv~G 251 (519)
++=..+.. ..+.+-..+++.. .+.+||++-
T Consensus 205 ~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 GKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 87665542 2333333445554 345788865
No 105
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.00 E-value=47 Score=32.15 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=93.8
Q ss_pred EEEEECCcEEEEEcCc--CCCccCCcEEEEE---cCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCC
Q 010034 24 SAVNIGKSKVVVFGGL--VDKRFLSDVVVYD---IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (519)
Q Consensus 24 ~~~~~~~~~lyv~GG~--~~~~~~~~~~~yd---~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~ 98 (519)
+|-+++| +||..=-. -.+..+.....|+ +..+.|+.-...+-+......-....-|+.|.+++.-|.+|=.+++
T Consensus 79 SMGv~~N-RLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD 157 (367)
T PF12217_consen 79 SMGVVGN-RLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD 157 (367)
T ss_dssp -EEEETT-EEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-S
T ss_pred eeeeecc-eeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCC
Confidence 4555674 66654321 1222333344444 4678898766543211111112234569999999988999866654
Q ss_pred cCCCcEEE-EEC------CCCeEEEEeeCCCCCCCCCccE-EEEECCcEEEEEe-cCCCCcCCCcEEEEECCCCcEEEec
Q 010034 99 RRLGDFWV-LDT------DIWQWSELTSFGDLPSPRDFAA-ASAIGNRKIVMYG-GWDGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 99 ~~~~dv~~-yd~------~t~~W~~~~~~g~~P~~r~~~~-~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
..-..+-. |-+ ..-.=+.++. . ..+...- |+-.-++.+|+.- |..+...-+.+.+-+..-..|+.+.
T Consensus 158 ~sPRe~G~~yfs~~~~sp~~~vrr~i~s--e--y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr 233 (367)
T PF12217_consen 158 VSPRELGFLYFSDAFASPGVFVRRIIPS--E--YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR 233 (367)
T ss_dssp SSS-EEEEEEETTTTT-TT--EEEE--G--G--G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE
T ss_pred CCcceeeEEEecccccCCcceeeeechh--h--hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc
Confidence 33333222 111 1111122221 1 1121111 2223456898875 5556667788999998889999996
Q ss_pred cCCCCCCcc--cCeeEEEeCCEEEEEcccCCCCC--------ccc----ccccc-cccccccCCCCceEEecC---CCCC
Q 010034 170 VTGSVPPPR--CGHTATMVEKRLLIYGGRGGGGP--------IMG----DLWAL-KGLIEEENETPGWTQLKL---PGQA 231 (519)
Q Consensus 170 ~~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~--------~~~----d~~~l-~~v~~Yd~~t~~W~~i~~---~g~~ 231 (519)
. |... ...-.+.+++.||+||-....+. .+. ..+.+ -.+-...++.-+|..+.. .|..
T Consensus 234 f----p~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~i 309 (367)
T PF12217_consen 234 F----PNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGI 309 (367)
T ss_dssp -----TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SS
T ss_pred c----cccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccc
Confidence 3 3222 22334567999999997543211 000 00111 122334566777877752 2333
Q ss_pred CCCcceeEE-EEeCCE-EEEEeccC
Q 010034 232 PSSRCGHTI-TSGGHY-LLLFGGHG 254 (519)
Q Consensus 232 P~~r~~~s~-~~~~~~-iyv~GG~~ 254 (519)
-....+.+. |+.++. -|+|||.+
T Consensus 310 vNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 310 VNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp S---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccceeEEEECCEEEEEecCcc
Confidence 344445444 445664 56888854
No 106
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.98 E-value=59 Score=32.55 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=87.5
Q ss_pred ceeEEceeCCCCCCCCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 010034 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~ 81 (519)
.+|+++.- +.+.|-.......++++.++++|.. ..+++=.=.-.+|+.+... .. -.-..
T Consensus 91 ~tW~~v~l-----~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~---------~~-gs~~~ 149 (302)
T PF14870_consen 91 KTWERVPL-----SSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSE---------TS-GSIND 149 (302)
T ss_dssp SS-EE---------TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S--------------EEE
T ss_pred CCcEEeec-----CCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccC---------Cc-ceeEe
Confidence 36888752 1122223344555666788887753 2344333344689987532 11 12222
Q ss_pred EEE-eCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEE-
Q 010034 82 AVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD- 159 (519)
Q Consensus 82 ~~~-~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd- 159 (519)
... -++++++++ ..+. -+-..|+-...|.+.. .+..|.-.+|....++.+++.. ..+. +..=+
T Consensus 150 ~~r~~dG~~vavs-~~G~----~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~-----~~~s~~ 214 (302)
T PF14870_consen 150 ITRSSDGRYVAVS-SRGN----FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQ-----IQFSDD 214 (302)
T ss_dssp EEE-TTS-EEEEE-TTSS----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE-----EEEEE-
T ss_pred EEECCCCcEEEEE-Cccc----EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcE-----EEEccC
Confidence 222 345544444 3332 1335677777899987 6667777788888888888875 3332 22222
Q ss_pred -CCCCcEEEeccCCCCCCcccCee-EEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcc
Q 010034 160 -TISLEWMQLPVTGSVPPPRCGHT-ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC 236 (519)
Q Consensus 160 -~~t~~W~~l~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~ 236 (519)
-...+|.+... +.....++.- ++.. ++.+++.||... +++=.-.-.+|++.......|..-+
T Consensus 215 ~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G~-------------l~~S~DgGktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 215 PDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSGT-------------LLVSTDGGKTWQKDRVGENVPSNLY 279 (302)
T ss_dssp TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT--------------EEEESSTTSS-EE-GGGTTSSS---
T ss_pred CCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCcc-------------EEEeCCCCccceECccccCCCCceE
Confidence 23456777320 1222233322 2333 578999988642 1111346779999874333443322
Q ss_pred eeEEEE-eCCEEEEEec
Q 010034 237 GHTITS-GGHYLLLFGG 252 (519)
Q Consensus 237 ~~s~~~-~~~~iyv~GG 252 (519)
.++. ..++-+++|-
T Consensus 280 --~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 280 --RIVFVNPDKGFVLGQ 294 (302)
T ss_dssp --EEEEEETTEEEEE-S
T ss_pred --EEEEcCCCceEEECC
Confidence 3333 5578899885
No 107
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=81.96 E-value=59 Score=32.54 Aligned_cols=104 Identities=10% Similarity=-0.034 Sum_probs=51.7
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCC-CcEEeeeecCCCCCCCCCCCCcceeEEEEe--CCeEEEEccccCCcCCCcEEEEE
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLD 108 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~-~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~dv~~yd 108 (519)
.+|+..+.+ +.+.+||+.+ .+++.+..... ....+.++.. +..+|+.+. . .+.+..|+
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~---------~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~ 63 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDV---------PGQVQPMVISPDKRHLYVGVR-P----EFRVLSYR 63 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEec---------CCCCccEEECCCCCEEEEEEC-C----CCcEEEEE
Confidence 467765432 5578888864 57776654321 1111223332 345676443 2 24577777
Q ss_pred CC-CCeEEEEeeCCCCCCCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCC
Q 010034 109 TD-IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS 162 (519)
Q Consensus 109 ~~-t~~W~~~~~~g~~P~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t 162 (519)
+. +++++.+.. .+.+..-+.++...++ .+|+.. +. .+.+..||+.+
T Consensus 64 ~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~ 111 (330)
T PRK11028 64 IADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDK 111 (330)
T ss_pred ECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECC
Confidence 75 556765542 2222111233333343 566654 22 24577787754
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.49 E-value=74 Score=33.40 Aligned_cols=146 Identities=16% Similarity=0.044 Sum_probs=73.7
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..+|++|+.+++=..+... +. ........-++ +|++.....+ ..++|.+|..++...++.. ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---------~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---------KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQ---SS 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC---------CC-CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCC---CC
Confidence 4699999988765555321 11 11112222233 5544333222 2579999998887666642 11
Q ss_pred CCCCccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (519)
.. ....+...++ .|++.....+ ...+|.+|..+.+.+.+...+ .........-++ .|+..... ...
T Consensus 284 -~~-~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~-~g~-- 351 (427)
T PRK02889 284 -GI-DTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRV-GGA-- 351 (427)
T ss_pred -CC-CcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEcc-CCc--
Confidence 11 1122333444 4544432222 246899998888887775222 111111222244 44443322 111
Q ss_pred ccccccccccccccCCCCceEEec
Q 010034 203 MGDLWALKGLIEEENETPGWTQLK 226 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~ 226 (519)
..++.+|+.++....+.
T Consensus 352 -------~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 352 -------FKLYVQDLATGQVTALT 368 (427)
T ss_pred -------EEEEEEECCCCCeEEcc
Confidence 24667788888877765
No 109
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=81.36 E-value=54 Score=31.75 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=91.5
Q ss_pred cEEE---EEcCcCCCccCCcEEEEEcCC-CcEEeeeecCCCCCCCCCCC-CcceeEEEEeCCeEEEEccc--cCCcCCCc
Q 010034 31 SKVV---VFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPG-PRAFHIAVAIDCHMFIFGGR--FGSRRLGD 103 (519)
Q Consensus 31 ~~ly---v~GG~~~~~~~~~~~~yd~~~-~~W~~l~~~~~~~~~~~~p~-~R~~h~~~~~~~~iyv~GG~--~~~~~~~d 103 (519)
+.|| +.|-..+-..+.--|+=.... ++|+...-...- -+.-|. .-.+.+|-++++++|++=-. -.+..+..
T Consensus 26 ~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~ 103 (367)
T PF12217_consen 26 NVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVR 103 (367)
T ss_dssp TEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-----TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEE
T ss_pred CeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc--CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhh
Confidence 5665 334345666677777777654 578776533210 011121 22345567889999876322 22334445
Q ss_pred EEEEE---CCCCeEEEEeeCCCCCC-------CCCccEEEEECCcEEEEEecCCCCcCCCcEEEEE-------CCCCcEE
Q 010034 104 FWVLD---TDIWQWSELTSFGDLPS-------PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD-------TISLEWM 166 (519)
Q Consensus 104 v~~yd---~~t~~W~~~~~~g~~P~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd-------~~t~~W~ 166 (519)
.+.|| ...+.|+.-.. +..|. .-.-|+-|.+.+ .-|.+|=.+++..-..+-.+- +....=+
T Consensus 104 ~~Lw~RpMF~~spW~~teL-~~~~~~~~a~~~vTe~HSFa~i~~-~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr 181 (367)
T PF12217_consen 104 AELWSRPMFHDSPWRITEL-GTIASFTSAGVAVTELHSFATIDD-NQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEEE-STTS--EEEEE-ES-TT--------SEEEEEEE-SS-S-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEE
T ss_pred hhhhcccccccCCceeeec-ccccccccccceeeeeeeeeEecC-CceeEEeccCCCCcceeeEEEecccccCCcceeee
Confidence 56665 36777865332 12333 344577788866 456777555543223332211 1111122
Q ss_pred EeccCCCCCCcccCeeEEEeCCEEEEEc-ccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCC
Q 010034 167 QLPVTGSVPPPRCGHTATMVEKRLLIYG-GRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH 245 (519)
Q Consensus 167 ~l~~~~~~p~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~ 245 (519)
.++ ......-+..+.-..++.||+.- |..... .. +.+.+-+.....|+.+..+...- ......+..++
T Consensus 182 ~i~--sey~~~AsEPCvkyY~g~LyLtTRgt~~~~-~G------S~L~rs~d~G~~w~slrfp~nvH--htnlPFakvgD 250 (367)
T PF12217_consen 182 IIP--SEYERNASEPCVKYYDGVLYLTTRGTLPTN-PG------SSLHRSDDNGQNWSSLRFPNNVH--HTNLPFAKVGD 250 (367)
T ss_dssp E----GGG-TTEEEEEEEEETTEEEEEEEES-TTS----------EEEEESSTTSS-EEEE-TT-----SS---EEEETT
T ss_pred ech--hhhccccccchhhhhCCEEEEEEcCcCCCC-Cc------ceeeeecccCCchhhcccccccc--ccCCCceeeCC
Confidence 222 11112222334455699999875 333222 22 23334467788999997432111 12224566899
Q ss_pred EEEEEecc
Q 010034 246 YLLLFGGH 253 (519)
Q Consensus 246 ~iyv~GG~ 253 (519)
.||+||-.
T Consensus 251 ~l~mFgsE 258 (367)
T PF12217_consen 251 VLYMFGSE 258 (367)
T ss_dssp EEEEEEE-
T ss_pred EEEEEecc
Confidence 99999864
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=80.29 E-value=57 Score=31.34 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=54.4
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe--CCeEEEEccccCCcCCCcEEEEEC
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDT 109 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~dv~~yd~ 109 (519)
.+|+.++. .+.+.+||+.+.+....-.. ...+ ..++.. ++.+|+.++.+ +.+.+||+
T Consensus 44 ~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~--------~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 44 LLYVCASD-----SDTIQVIDLATGEVIGTLPS--------GPDP---ELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred EEEEEECC-----CCeEEEEECCCCcEEEeccC--------CCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 56676653 24588899988765442111 1111 122222 34566665432 35899999
Q ss_pred CCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcE
Q 010034 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (519)
Q Consensus 110 ~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (519)
.+.+-... .+.+....+++...++.+++++..+. +.+..||..+.+-
T Consensus 103 ~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 103 ETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred CCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 87643221 11122223445555667777765432 2356678776543
No 111
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.51 E-value=56 Score=33.19 Aligned_cols=169 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred ceeEEEEe--CCeEEEEccccCCcCCCcEEEEECCCCe--EEEEeeCCCCCCCC-CccEEEEECCcEEEEEecCCCCcCC
Q 010034 78 AFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWL 152 (519)
Q Consensus 78 ~~h~~~~~--~~~iyv~GG~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~r-~~~~~~~~~~~~iyv~GG~~~~~~~ 152 (519)
.-|.+... ++.+|+.-= -.+.+++|+..... ....... ..|.+- -.|.+..-....+||..-. .
T Consensus 145 h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s 213 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----S 213 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----T
T ss_pred cceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----C
Confidence 34666655 346776521 12568888887665 5543221 122221 1133333233488998743 3
Q ss_pred CcEEEEECC--CCcEEEeccCCCCCCc---c-cCeeEEEe--CCEEEEEcccCCCCCcccccccccccccccC--CCCce
Q 010034 153 SDVYVLDTI--SLEWMQLPVTGSVPPP---R-CGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEEN--ETPGW 222 (519)
Q Consensus 153 ~~v~~yd~~--t~~W~~l~~~~~~p~~---r-~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~--~t~~W 222 (519)
+.+..|+.. +.+++.+.....+|.. . ..+.+... ++.||+.-.. -+.+..|++ .+++.
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------------~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------------SNSISVFDLDPATGTL 281 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------------TTEEEEEEECTTTTTE
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------------CCEEEEEEEecCCCce
Confidence 445555444 7777766532233322 1 22233333 3478886432 144555555 55566
Q ss_pred EEec---CCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEE--EcCCCeEEEccc
Q 010034 223 TQLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIIL--DRLSAQWKRLPI 284 (519)
Q Consensus 223 ~~i~---~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~y--d~~t~~W~~v~~ 284 (519)
+.+. ..|.. ||. .++...++.+|+....+ +.|.+| |.++..++.+..
T Consensus 282 ~~~~~~~~~G~~--Pr~-~~~s~~g~~l~Va~~~s------------~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 282 TLVQTVPTGGKF--PRH-FAFSPDGRYLYVANQDS------------NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEESSSS--EEE-EEE-TTSSEEEEEETTT------------TEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEeCCCCC--ccE-EEEeCCCCEEEEEecCC------------CeEEEEEEeCCCCcEEEecc
Confidence 6554 11222 222 22222455666654322 445555 557888887654
No 112
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.49 E-value=1.1e+02 Score=33.17 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=50.5
Q ss_pred EEEeCCeEEEEccccCCcCCCcEEEEECCCC--eEEEEeeCC-CC-C---CCCCccEEEEECCcEEEEEecCCCCcCCCc
Q 010034 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG-DL-P---SPRDFAAASAIGNRKIVMYGGWDGKKWLSD 154 (519)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~--~W~~~~~~g-~~-P---~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (519)
-++.++.||+.... ..++.+|..|+ .|+.-.... .. + ....... +++.+++||+.. .+ ..
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t-~d-----g~ 131 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGT-LD-----AR 131 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEc-CC-----CE
Confidence 35668899986442 35889998876 587543110 00 0 0011112 233345777643 22 34
Q ss_pred EEEEECCCCc--EEEeccCCCCCCc-ccCeeEEEeCCEEEEE
Q 010034 155 VYVLDTISLE--WMQLPVTGSVPPP-RCGHTATMVEKRLLIY 193 (519)
Q Consensus 155 v~~yd~~t~~--W~~l~~~~~~p~~-r~~~~~~~~~~~lyv~ 193 (519)
++.+|..|.+ |+.-.. ..... ....+-++.++++|+-
T Consensus 132 l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred EEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEe
Confidence 8999998876 765431 11111 1223344557877764
No 113
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.09 E-value=99 Score=30.42 Aligned_cols=182 Identities=14% Similarity=0.034 Sum_probs=104.3
Q ss_pred cEEEEEcCCCcEEeeeecCCCCCCCCCCCCcc--eeEEEEe--CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCC
Q 010034 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA--FHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (519)
Q Consensus 47 ~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~--~h~~~~~--~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 122 (519)
.+-++|+++..-+..+ .|..+. +.-..+. .++++..|-..-. -++|+.++.-+..+
T Consensus 125 aI~R~dpkt~evt~f~----------lp~~~a~~nlet~vfD~~G~lWFt~q~G~y------GrLdPa~~~i~vfp---- 184 (353)
T COG4257 125 AIGRLDPKTLEVTRFP----------LPLEHADANLETAVFDPWGNLWFTGQIGAY------GRLDPARNVISVFP---- 184 (353)
T ss_pred eeEEecCcccceEEee----------cccccCCCcccceeeCCCccEEEeeccccc------eecCcccCceeeec----
Confidence 5777888776655543 233222 2223333 3567766542111 16777777665554
Q ss_pred CCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCc-ccCeeEEEe--CCEEEEEcccCCC
Q 010034 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPP-RCGHTATMV--EKRLLIYGGRGGG 199 (519)
Q Consensus 123 ~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~ 199 (519)
.|.+-.-+.+|+..+|.+|+.-= .-|-+-+.|+.+..=+.+. .|.+ ..+.--+.. -+++++.- .
T Consensus 185 aPqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt---w- 251 (353)
T COG4257 185 APQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT---W- 251 (353)
T ss_pred cCCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec---c-
Confidence 55666667888888888887621 1234667788777555553 2222 111111111 35666651 1
Q ss_pred CCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEE-eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 200 GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 200 ~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
.--.++.|||++..|..-+.++.-|.+ .++-+ ..+++++.- .-.+.+.+||+++.+
T Consensus 252 --------g~g~l~rfdPs~~sW~eypLPgs~arp---ys~rVD~~grVW~se------------a~agai~rfdpeta~ 308 (353)
T COG4257 252 --------GTGSLHRFDPSVTSWIEYPLPGSKARP---YSMRVDRHGRVWLSE------------ADAGAIGRFDPETAR 308 (353)
T ss_pred --------CCceeeEeCcccccceeeeCCCCCCCc---ceeeeccCCcEEeec------------cccCceeecCcccce
Confidence 124567889999999998766544432 23333 345666522 124678999999999
Q ss_pred EEEccc
Q 010034 279 WKRLPI 284 (519)
Q Consensus 279 W~~v~~ 284 (519)
.+.++.
T Consensus 309 ftv~p~ 314 (353)
T COG4257 309 FTVLPI 314 (353)
T ss_pred EEEecC
Confidence 888664
No 114
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=72.48 E-value=1e+02 Score=33.30 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=37.1
Q ss_pred CCCCCccEEEEE-CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeC--CEEEEEcccC
Q 010034 124 PSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE--KRLLIYGGRG 197 (519)
Q Consensus 124 P~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~ 197 (519)
-.|+.+..++.. .+..||+.| .-+++|++|+..+.|-..- -.--...-++.++ +.|+.+||..
T Consensus 131 RIP~~GRDm~y~~~scDly~~g------sg~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG------SGSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred ecCcCCccccccCCCccEEEee------cCcceEEEEcccccccccc-----ccccccceeeeecCccceEEecccC
Confidence 345555555553 233677765 2467999999999987642 1111222233343 5788899864
No 115
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=71.07 E-value=1e+02 Score=29.84 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=83.5
Q ss_pred CCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEE---eeeecCCCCCCCCCCCCcceeEEEEeCCeEEEE
Q 010034 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWF---QPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (519)
Q Consensus 16 ~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~---~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~ 92 (519)
+|-+=.|-+.++.+ |.+|-- ....+.+.+||+.++.=. .++..+.....+-...+-...-.++..+-|+|+
T Consensus 65 Lp~~~~GtG~vVYn-gslYY~-----~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 65 LPYPWQGTGHVVYN-GSLYYN-----KYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred EeceeccCCeEEEC-CcEEEE-----ecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 33333444445555 344432 224688999999998644 343221100000001111223344555667776
Q ss_pred ccccCCcCCCcEEEEECCCC----eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEe
Q 010034 93 GGRFGSRRLGDFWVLDTDIW----QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (519)
Q Consensus 93 GG~~~~~~~~dv~~yd~~t~----~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l 168 (519)
-......-.-.+-..|+.+- +|.. ..+.+..+.+-.++ |.+|++-..+... ..=.+.||+.+++=..+
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T-----~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNT-----SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDV 210 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEe-----ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceece
Confidence 44433221112444566543 4642 24444444433333 4899997765433 33357899998876655
Q ss_pred ccCCCCCCcccCeeEEEe---CCEEEEEc
Q 010034 169 PVTGSVPPPRCGHTATMV---EKRLLIYG 194 (519)
Q Consensus 169 ~~~~~~p~~r~~~~~~~~---~~~lyv~G 194 (519)
.. +.+.+-..++++.. +++||++-
T Consensus 211 ~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 211 SI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ee--eeccccCceEeeeECCCCCeEEEEE
Confidence 42 34445555666666 56899874
No 116
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.93 E-value=89 Score=32.28 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=106.6
Q ss_pred ECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeE-EEEccccCCcCCCcEEE
Q 010034 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHM-FIFGGRFGSRRLGDFWV 106 (519)
Q Consensus 28 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~i-yv~GG~~~~~~~~dv~~ 106 (519)
..+|.-+||+|.. .-...++..|+.+.+-++++... .....+-..+.-+..+ |+-.+ ..++.
T Consensus 44 t~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~--------g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~ 106 (386)
T PF14583_consen 44 TDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGP--------GDNTFGGFLSPDDRALYYVKNG-------RSLRR 106 (386)
T ss_dssp -TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETT-------TEEEE
T ss_pred CCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCC--------CCCccceEEecCCCeEEEEECC-------CeEEE
Confidence 3557777776642 23467899999999999987421 1122222222234555 44444 35888
Q ss_pred EECCCCeEEEEeeCCCCCCCCCccEEEEE-CCcEEEEEecC----C--------------CCcCCCcEEEEECCCCcEEE
Q 010034 107 LDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGW----D--------------GKKWLSDVYVLDTISLEWMQ 167 (519)
Q Consensus 107 yd~~t~~W~~~~~~g~~P~~r~~~~~~~~-~~~~iyv~GG~----~--------------~~~~~~~v~~yd~~t~~W~~ 167 (519)
.|+.|.+=+.+- ..|..-.++...+. .++.. ++|=. + .......+...|+.|++.+.
T Consensus 107 vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 107 VDLDTLEERVVY---EVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EETTT--EEEEE---E--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EECCcCcEEEEE---ECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 999888766666 35555544444443 23222 22211 0 01234568888999988887
Q ss_pred eccCCCCCCcccCeeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCE
Q 010034 168 LPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHY 246 (519)
Q Consensus 168 l~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~ 246 (519)
+-.+ ..-.+|.-..- +..+++|==.+.-...-.-+|.+ |.+......+.. ..+....+|=.-+.+|.
T Consensus 183 v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i------~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 183 VFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI------NTDGSNVKKVHR--RMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE------ETTS---EESS-----TTEEEEEEEE-TTSS
T ss_pred EEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEE------EcCCCcceeeec--CCCCcccccccccCCCC
Confidence 7521 11123333332 44555552111111111234544 555545555542 34555667766666554
Q ss_pred -EEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCC
Q 010034 247 -LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (519)
Q Consensus 247 -iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~ 311 (519)
|+..+.... + ..--+..||+++..=+.+..+ ++..|=.+..++++++--|.+
T Consensus 251 ~i~y~~~~~~-~-------~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPG-G-------QDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETT-T---------EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCC-C-------CceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 333333232 1 112367788887653444333 346677777888998876654
No 117
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.77 E-value=1.1e+02 Score=30.06 Aligned_cols=85 Identities=16% Similarity=0.029 Sum_probs=55.6
Q ss_pred cEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCee
Q 010034 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (519)
Q Consensus 103 dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~ 182 (519)
.+-.+|+.|++=...+ ++.+-.-|..++-.++..++.-+- +.+-++|++|..-++.+....++..-. -+
T Consensus 84 aiGhLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~~------~aI~R~dpkt~evt~f~lp~~~a~~nl-et 152 (353)
T COG4257 84 AIGHLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDTG------LAIGRLDPKTLEVTRFPLPLEHADANL-ET 152 (353)
T ss_pred cceecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecCc------ceeEEecCcccceEEeecccccCCCcc-cc
Confidence 3667899999988887 777777788777777666665321 258899999998888864333222221 22
Q ss_pred EEEe-CCEEEEEcccCC
Q 010034 183 ATMV-EKRLLIYGGRGG 198 (519)
Q Consensus 183 ~~~~-~~~lyv~GG~~~ 198 (519)
+++. .+.|+..|-...
T Consensus 153 ~vfD~~G~lWFt~q~G~ 169 (353)
T COG4257 153 AVFDPWGNLWFTGQIGA 169 (353)
T ss_pred eeeCCCccEEEeecccc
Confidence 3333 468888775433
No 118
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.41 E-value=1.3e+02 Score=30.59 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=64.8
Q ss_pred cEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEcccc----CCcCCCcEE
Q 010034 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRF----GSRRLGDFW 105 (519)
Q Consensus 31 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~----~~~~~~dv~ 105 (519)
.++||.---... ..+.++++|..+++-.-+ .+.+-..+.+..- +..+|+..=+- -+...+-+.
T Consensus 3 ~rvyV~D~~~~~-~~~rv~viD~d~~k~lGm-----------i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~ 70 (342)
T PF06433_consen 3 HRVYVQDPVFFH-MTSRVYVIDADSGKLLGM-----------IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVE 70 (342)
T ss_dssp TEEEEEE-GGGG-SSEEEEEEETTTTEEEEE-----------EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEECCcccc-ccceEEEEECCCCcEEEE-----------eecccCCceeECCCCCEEEEEEEEEeccccccceeEEE
Confidence 367776542111 235789999888874333 2334445544443 34678765442 134556699
Q ss_pred EEECCCCeEEE-EeeCCCCCCC-CCcc-----EEEEE-CCcEEEEEecCCCCcCCCcEEEEECCCCcEEE
Q 010034 106 VLDTDIWQWSE-LTSFGDLPSP-RDFA-----AASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (519)
Q Consensus 106 ~yd~~t~~W~~-~~~~g~~P~~-r~~~-----~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (519)
+||..|.+-.. +. +|.. |... ..+.. +++.+||+ +-.+..+|-+.|+...+...
T Consensus 71 ~~D~~TL~~~~EI~----iP~k~R~~~~~~~~~~~ls~dgk~~~V~----N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 71 IWDTQTLSPTGEIE----IPPKPRAQVVPYKNMFALSADGKFLYVQ----NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEETTTTEEEEEEE----ETTS-B--BS--GGGEEE-TTSSEEEEE----EESSSEEEEEEETTTTEEEE
T ss_pred EEecCcCcccceEe----cCCcchheecccccceEEccCCcEEEEE----ccCCCCeEEEEECCCCceee
Confidence 99999985432 22 3433 5421 12222 34466776 23456788999999887654
No 119
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.20 E-value=39 Score=35.37 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=64.5
Q ss_pred CccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcE-EEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCccccc
Q 010034 128 DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW-MQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDL 206 (519)
Q Consensus 128 ~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~ 206 (519)
.-+++..-.||+++..|+-.|. +-+||..+..- +.+. ....|...--....++.+++.|+-+.-
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~-----V~vfD~k~r~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sDd~v------- 134 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGH-----VKVFDMKSRVILRQLY---AHQAPVHVTKFSPQDNTMLVSGSDDKV------- 134 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCc-----EEEeccccHHHHHHHh---hccCceeEEEecccCCeEEEecCCCce-------
Confidence 3455556678899999987765 77888554210 1111 111111111112237788888864321
Q ss_pred ccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCC-eEE
Q 010034 207 WALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-QWK 280 (519)
Q Consensus 207 ~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~-~W~ 280 (519)
+..+|.++..- +....|..-.-|++ ++...++.|++-||+++ .|-.||+.+. .|.
T Consensus 135 -----~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg------------~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 135 -----VKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG------------KVRLWDTRSLTSRV 190 (487)
T ss_pred -----EEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc------------eEEEEEeccCCcee
Confidence 12234444442 43333333333443 44457888999999764 4677787665 444
No 120
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.79 E-value=1.5e+02 Score=31.02 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=65.7
Q ss_pred ceeEEceeCCCCCCCCCC-CcceEEEE--ECCcEEEEEcCcCCCccCCcEEEEEcC--CCcEEeeeecCCCCCCCCCCCC
Q 010034 2 HYWVRASSSDFGGTVPQP-RSGHSAVN--IGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGPGP 76 (519)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~-R~gh~~~~--~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~p~~ 76 (519)
.+|+++.. +..+ +.-..+.. .+..+.+++|-.. .++-.. -++|........ ......
T Consensus 75 ~~W~q~~~------p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~----~~~~~~ 136 (398)
T PLN00033 75 SEWEQVDL------PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSA----EDEDFN 136 (398)
T ss_pred CccEEeec------CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcc----cccccc
Confidence 36888852 2222 22233333 2445788888632 233332 357988542110 011111
Q ss_pred cceeEEEEeCCeEEEEccccCCcCCCcEEEEEC--CCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCc
Q 010034 77 RAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSD 154 (519)
Q Consensus 77 R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~--~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (519)
.....+...+++.|+.|-. + .+|-. .-.+|+.++....+|.. .+...+++++.++++|... .
T Consensus 137 ~~l~~v~f~~~~g~~vG~~-G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G------~ 200 (398)
T PLN00033 137 YRFNSISFKGKEGWIIGKP-A-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG------A 200 (398)
T ss_pred cceeeeEEECCEEEEEcCc-e-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEeccc------e
Confidence 1234455567788888542 1 22222 34689988642223333 2334445555788887422 2
Q ss_pred EEEEECCCCcEEEe
Q 010034 155 VYVLDTISLEWMQL 168 (519)
Q Consensus 155 v~~yd~~t~~W~~l 168 (519)
+++=+-.-.+|+.+
T Consensus 201 v~~S~D~G~tW~~~ 214 (398)
T PLN00033 201 IYVTSNAGRNWKAA 214 (398)
T ss_pred EEEECCCCCCceEc
Confidence 45444445689987
No 121
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=68.67 E-value=98 Score=30.94 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=72.2
Q ss_pred CcEEEEEcCCC-----cEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCe-EEEEee
Q 010034 46 SDVVVYDIDNK-----LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ-WSELTS 119 (519)
Q Consensus 46 ~~~~~yd~~~~-----~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~-W~~~~~ 119 (519)
..+.+|++... +++.+... ..+-.-.+++.+++++.+.-| +.+.+|+....+ +...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---------~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---------EVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---------EESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---------eecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhhe
Confidence 67999999885 56655432 112225677777888766666 468899888887 887773
Q ss_pred CCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCc--EEEEECCCCcEEEeccCCCCCCcccCeeEEEe-CCEEEEEc
Q 010034 120 FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSD--VYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYG 194 (519)
Q Consensus 120 ~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~lyv~G 194 (519)
...+-...++.+.++ .|+ +|-. ..+ ++.|+....+-..++ .-+.++...++..+ ++..++.+
T Consensus 126 ---~~~~~~i~sl~~~~~-~I~-vgD~-----~~sv~~~~~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 126 ---YDSPFYITSLSVFKN-YIL-VGDA-----MKSVSLLRYDEENNKLILVA---RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp ---E-BSSSEEEEEEETT-EEE-EEES-----SSSEEEEEEETTTE-EEEEE---EESS-BEEEEEEEE-SSSEEEEE
T ss_pred ---ecceEEEEEEecccc-EEE-EEEc-----ccCEEEEEEEccCCEEEEEE---ecCCCccEEEEEEecCCcEEEEE
Confidence 444444555555655 555 4432 233 446687666677776 44456666666666 55534333
No 122
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.39 E-value=1.5e+02 Score=30.56 Aligned_cols=213 Identities=14% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCc-EEeeeecCCCCCCCCCCCCcceeEEEEe---CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeC
Q 010034 45 LSDVVVYDIDNKL-WFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF 120 (519)
Q Consensus 45 ~~~~~~yd~~~~~-W~~l~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~ 120 (519)
.+.+.+.|..+++ -..++ ....-|..... +.++|+.+. + ..+-++|+.+.+ .+.
T Consensus 15 ~~~v~viD~~t~~~~~~i~------------~~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~-- 72 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIP------------TGGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVA-- 72 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-------------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEE--
T ss_pred CCEEEEEECCCCeEEEEEc------------CCCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEE--
Confidence 3678889988865 33332 21223654433 357898853 2 258899999987 332
Q ss_pred CCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCC----CCcccCeeEEEeCCEEEEEccc
Q 010034 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSV----PPPRCGHTATMVEKRLLIYGGR 196 (519)
Q Consensus 121 g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~----p~~r~~~~~~~~~~~lyv~GG~ 196 (519)
..+.+....+.++-.+|+..+.+.+. .+.+..+|..|.+=.+.-+.+.+ +.+|...-.....+..||+--.
T Consensus 73 -~i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 73 -TIKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -EEE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -EEecCCCcceEEEcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 13445444555555555555555433 24588899888764433222222 3344322222234454555322
Q ss_pred CCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEe-CCEEEEEeccCCCCCcccccceeCcEEEEEcC
Q 010034 197 GGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRL 275 (519)
Q Consensus 197 ~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~ 275 (519)
. ...+|.++ |....+.... .....++-|-.... +++.++.+-. -.+.+-+.|.+
T Consensus 148 d-----~~~I~vVd----y~d~~~~~~~-----~i~~g~~~~D~~~dpdgry~~va~~-----------~sn~i~viD~~ 202 (369)
T PF02239_consen 148 D-----TGEIWVVD----YSDPKNLKVT-----TIKVGRFPHDGGFDPDGRYFLVAAN-----------GSNKIAVIDTK 202 (369)
T ss_dssp T-----TTEEEEEE----TTTSSCEEEE-----EEE--TTEEEEEE-TTSSEEEEEEG-----------GGTEEEEEETT
T ss_pred c-----CCeEEEEE----ecccccccee-----eecccccccccccCcccceeeeccc-----------ccceeEEEeec
Confidence 1 12233331 2211222221 12344555555553 3444444322 24678899988
Q ss_pred CCeEEEcccCCCCCCCCcceEEEEeC-CEEEEEcc
Q 010034 276 SAQWKRLPIGNEPPPARAYHSMTCLG-SLYLLFGG 309 (519)
Q Consensus 276 t~~W~~v~~~~~~p~~R~~~~~v~~~-~~iyv~GG 309 (519)
+.+-..+-..+..|.+.....+...+ +-++..+|
T Consensus 203 ~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 203 TGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 87665543333233333334444333 34454554
No 123
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=67.36 E-value=1.7e+02 Score=30.90 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=97.1
Q ss_pred ECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEE
Q 010034 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (519)
Q Consensus 28 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~y 107 (519)
++ ++||.+--.++ ...++.-|+.-+.-++.+...+ ++.--+..+++-.||- .-.|+|.|
T Consensus 234 V~-~RvYFlsD~eG---~GnlYSvdldGkDlrrHTnFtd-----------YY~R~~nsDGkrIvFq------~~GdIyly 292 (668)
T COG4946 234 VG-ERVYFLSDHEG---VGNLYSVDLDGKDLRRHTNFTD-----------YYPRNANSDGKRIVFQ------NAGDIYLY 292 (668)
T ss_pred Ec-ceEEEEecccC---ccceEEeccCCchhhhcCCchh-----------ccccccCCCCcEEEEe------cCCcEEEe
Confidence 44 57777654433 3456666766665555432211 2222223345444441 11379999
Q ss_pred ECCCCeEEEEeeCCCCCCCCCccEE------------EEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCC
Q 010034 108 DTDIWQWSELTSFGDLPSPRDFAAA------------SAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP 175 (519)
Q Consensus 108 d~~t~~W~~~~~~g~~P~~r~~~~~------------~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p 175 (519)
||++.+-+.+.. .+|.-|..-.. ++.....|-++. ....++.++..+--.++. ...
T Consensus 293 dP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~---~~~ 360 (668)
T COG4946 293 DPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVG---KKG 360 (668)
T ss_pred CCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcC---CCC
Confidence 999999888764 34444321111 111111222221 112444444333323332 111
Q ss_pred CcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCC
Q 010034 176 PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (519)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~ 255 (519)
.-|+ .-...++.-.|+|-..+ +.+.+||..+..-..+. .+..+.....+.-+++.++++-.
T Consensus 361 ~VrY--~r~~~~~e~~vigt~dg-----------D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNd-- 421 (668)
T COG4946 361 GVRY--RRIQVDPEGDVIGTNDG-----------DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVAND-- 421 (668)
T ss_pred ceEE--EEEccCCcceEEeccCC-----------ceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcC--
Confidence 1122 22223444666665433 45677888888877775 34445444444456676665531
Q ss_pred CCCcccccceeCcEEEEEcCCCeEEEccc
Q 010034 256 GGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
.-.+|++|+++..-+.+..
T Consensus 422 ----------r~el~vididngnv~~idk 440 (668)
T COG4946 422 ----------RFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred ----------ceEEEEEEecCCCeeEecc
Confidence 2468999988887666544
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=66.36 E-value=1.5e+02 Score=29.95 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=104.6
Q ss_pred EEcCcCCCccCCcEEE--EEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEE--ECC
Q 010034 35 VFGGLVDKRFLSDVVV--YDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL--DTD 110 (519)
Q Consensus 35 v~GG~~~~~~~~~~~~--yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~y--d~~ 110 (519)
++|++.. .....+++ ||..+.+++.+..... .+.|.+ -+.-..++.||+..... .....+..| +.+
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~------~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~ 72 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE------GENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPD 72 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE------SSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETT
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC------CCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCC
Confidence 3455543 22234444 5668899988764311 112111 11111356788885543 112335455 455
Q ss_pred CCeEEEEeeCCCCCCCCCccEEEEE--CCcEEEEEecCCCCcCCCcEEEEECCCC-cEEEec----c--CCCCC---Ccc
Q 010034 111 IWQWSELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLP----V--TGSVP---PPR 178 (519)
Q Consensus 111 t~~W~~~~~~g~~P~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~l~----~--~~~~p---~~r 178 (519)
+++.+.+.. .+......+.+.+ .++.+|+.- +. ...+..|++..+ +-.... . .++.+ ..-
T Consensus 73 ~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 73 TGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp TTEEEEEEE---EEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSST
T ss_pred cceeEEeee---eccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccc
Confidence 578888764 3322222222333 333566642 22 234777777653 222221 0 11111 122
Q ss_pred cCeeEEEe-C-CEEEEEcccCCCCCcccccccccccccccCCCCc--eEEecCCCCCCC-CcceeEEEE-eCCEEEEEec
Q 010034 179 CGHTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPS-SRCGHTITS-GGHYLLLFGG 252 (519)
Q Consensus 179 ~~~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~--W~~i~~~g~~P~-~r~~~s~~~-~~~~iyv~GG 252 (519)
.-|.+... + +.+|+.. . + .+.+..|+.+... .+..... ..|. ..-.|.+.. .+..+||..-
T Consensus 145 h~H~v~~~pdg~~v~v~d-l---G--------~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD-L---G--------ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE-T---T--------TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEe-c---C--------CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecC
Confidence 33555555 3 4677753 1 1 2566677776655 5542211 1222 112233333 4458999875
Q ss_pred cCCCCCcccccceeCcEEEEEcC--CCeEEEcccCCCC---CCCC-cceEEEEe--CCEEEEEc
Q 010034 253 HGTGGWLSRYDIYYNDTIILDRL--SAQWKRLPIGNEP---PPAR-AYHSMTCL--GSLYLLFG 308 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~--t~~W~~v~~~~~~---p~~R-~~~~~v~~--~~~iyv~G 308 (519)
. .+.|.+|+.. +..++.+...... .... ..+.++.. +..+|+.-
T Consensus 212 ~------------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 212 L------------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp T------------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred C------------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 3 3566666665 6666655432212 2222 23333333 45677754
No 125
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=65.78 E-value=1.9e+02 Score=30.92 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=41.7
Q ss_pred EEEeCCeEEEEccccCCcCCCcEEEEECCCCe--EEEEeeCC-CCCCCC-CccEEEEECCcEEEEEecCCCCcCCCcEEE
Q 010034 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFG-DLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (519)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~--W~~~~~~g-~~P~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (519)
-++.++++|+.... ..++.+|..+++ |+.-.... ....+. .....++.++++||+.. .+ ..++.
T Consensus 57 Pvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~-----g~v~A 124 (488)
T cd00216 57 PLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FD-----GRLVA 124 (488)
T ss_pred CEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CC-----CeEEE
Confidence 35678899986542 358899988764 87643211 000011 11112233325777643 22 35889
Q ss_pred EECCCCc--EEEec
Q 010034 158 LDTISLE--WMQLP 169 (519)
Q Consensus 158 yd~~t~~--W~~l~ 169 (519)
+|..|.+ |+.-.
T Consensus 125 lD~~TG~~~W~~~~ 138 (488)
T cd00216 125 LDAETGKQVWKFGN 138 (488)
T ss_pred EECCCCCEeeeecC
Confidence 9988765 87643
No 126
>PRK01742 tolB translocation protein TolB; Provisional
Probab=65.56 E-value=1.8e+02 Score=30.48 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=35.5
Q ss_pred CcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEec-CCCCcCCCcEEEEECCCCcEEEec
Q 010034 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG-WDGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 102 ~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG-~~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
..++.+|+.+++-+.+.. .+.. ..+.+.-.+++..+++. .++. .++|.+|+.+.....+.
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeec
Confidence 458999999887666652 2221 12233334554444433 3332 35899999988877775
No 127
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.56 E-value=2.8e+02 Score=31.07 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=41.2
Q ss_pred EEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECC
Q 010034 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (519)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (519)
.++.++++.++.|.++ ++-..|..|.+-..- ++.. +-+++..+.+++..|.|+.+|. +..||+.
T Consensus 379 l~vS~d~~~~~Sga~~-----SikiWn~~t~kciRT-----i~~~-y~l~~~Fvpgd~~Iv~G~k~Ge-----l~vfdla 442 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGE-----SIKIWNRDTLKCIRT-----ITCG-YILASKFVPGDRYIVLGTKNGE-----LQVFDLA 442 (888)
T ss_pred EEeecCceeeeecCCC-----cEEEEEccCcceeEE-----eccc-cEEEEEecCCCceEEEeccCCc-----eEEEEee
Confidence 4455666766665443 466777776554332 3344 5667777766677777877665 7788876
Q ss_pred CC
Q 010034 162 SL 163 (519)
Q Consensus 162 t~ 163 (519)
+.
T Consensus 443 S~ 444 (888)
T KOG0306|consen 443 SA 444 (888)
T ss_pred hh
Confidence 54
No 128
>PTZ00421 coronin; Provisional
Probab=59.06 E-value=2.6e+02 Score=30.12 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=37.8
Q ss_pred CeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 87 ~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
+.+++.||.++ .+.++|+.+++-...-. ... ..-.+++...++.+++.|+.++. +.+||+.+.+
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~l~---~h~-~~V~sla~spdG~lLatgs~Dg~-----IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEVIK---CHS-DQITSLEWNLDGSLLCTTSKDKK-----LNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEEEc---CCC-CceEEEEEECCCCEEEEecCCCE-----EEEEECCCCc
Confidence 45777777653 47889998775322210 111 11223333456678888876653 7889998765
No 129
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.73 E-value=2e+02 Score=28.67 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=67.7
Q ss_pred eEEEEeCCeEEEEccccC-----------------CcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEE--E---CC
Q 010034 80 HIAVAIDCHMFIFGGRFG-----------------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA--I---GN 137 (519)
Q Consensus 80 h~~~~~~~~iyv~GG~~~-----------------~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~--~---~~ 137 (519)
.+...+++.|| |||+-. .+.++-++.||.++.+-+.+=.. ...-++.-.+=+. + -+
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCc
Confidence 44445677766 788621 12356799999998874333110 1222222222111 1 12
Q ss_pred cEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccC
Q 010034 138 RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEEN 217 (519)
Q Consensus 138 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~ 217 (519)
+++++.-+ +++ ..-.+|..|..++.=+++. .-|.+. .+...+..++-+ ..... -++.+.+||+
T Consensus 118 D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~---~~ps~K---G~~~~D~a~F~i--~~~~~-------g~~~i~~~Dl 180 (339)
T PF09910_consen 118 DRLLLARA-DGH-ANLGVYSLDRRTGKAEKLS---SNPSLK---GTLVHDYACFGI--NNFHK-------GVSGIHCLDL 180 (339)
T ss_pred CEEEEEec-CCc-ceeeeEEEcccCCceeecc---CCCCcC---ceEeeeeEEEec--ccccc-------CCceEEEEEc
Confidence 36666532 222 2345899999999988887 444442 233334344422 11111 2578899999
Q ss_pred CCCce
Q 010034 218 ETPGW 222 (519)
Q Consensus 218 ~t~~W 222 (519)
.+++|
T Consensus 181 i~~~~ 185 (339)
T PF09910_consen 181 ISGKW 185 (339)
T ss_pred cCCeE
Confidence 99999
No 130
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=57.06 E-value=1.9e+02 Score=27.86 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=76.9
Q ss_pred EEECCcEEEEEcCcCCCccCCcEEEEEcCC-CcEEeeeecCCCCCCCCCCCCcceeEEEE--eCCeEEEEccccCCcCCC
Q 010034 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCHMFIFGGRFGSRRLG 102 (519)
Q Consensus 26 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~-~~W~~l~~~~~~~~~~~~p~~R~~h~~~~--~~~~iyv~GG~~~~~~~~ 102 (519)
+.+.++++++..=.........+..|.... .+|+..... .+.....+.+.+ -++.|+++-...... .
T Consensus 114 i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~--------~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~ 183 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPI--------PDGQGECEPSIVELPDGRLLAVFRTEGND--D 183 (275)
T ss_dssp EEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEEC--------ECSEEEEEEEEEEETTSEEEEEEEECSST--E
T ss_pred eEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccc--------cccCCcceeEEEECCCCcEEEEEEccCCC--c
Confidence 345567877762111112233445566554 469887632 122244444444 257888886653111 2
Q ss_pred cEEEEECC-CCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCe
Q 010034 103 DFWVLDTD-IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (519)
Q Consensus 103 dv~~yd~~-t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~ 181 (519)
-...+..+ -.+|+..... .+|.+.....++...++.++++.........-.++.-.-...+|.....-.+-+...+++
T Consensus 184 ~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y 262 (275)
T PF13088_consen 184 IYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGY 262 (275)
T ss_dssp EEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEE
T ss_pred EEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEEC
Confidence 34444554 3479875421 356666555555566778888877322221222322233377898765211112122333
Q ss_pred e-EEEe-CCEEEE
Q 010034 182 T-ATMV-EKRLLI 192 (519)
Q Consensus 182 ~-~~~~-~~~lyv 192 (519)
. ++.. +++|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 3 3344 568886
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=54.24 E-value=3.9e+02 Score=30.63 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=35.2
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEE-EEeeCCCCCCCCCccEEEEE--CCcEEEEEecCCCCcCCCcEEEEECCC
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~-~~~~~g~~P~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (519)
++.+++.||.++ .+.+||+.+..-. .+. .. ....++.+ .++.+++.|+.++ .+..||+.+
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~----~~---~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~ 649 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTIK----TK---ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRN 649 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEEe----cC---CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 456777777654 4788888765322 221 11 11122222 3467888887654 488899876
Q ss_pred C
Q 010034 163 L 163 (519)
Q Consensus 163 ~ 163 (519)
.
T Consensus 650 ~ 650 (793)
T PLN00181 650 P 650 (793)
T ss_pred C
Confidence 4
No 132
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.22 E-value=1.5e+02 Score=31.98 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCCCCcceEEEEECCc-EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEcc
Q 010034 16 VPQPRSGHSAVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGG 94 (519)
Q Consensus 16 ~P~~R~gh~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG 94 (519)
.-.|+.|--++.-.-+ -||+.|- -+++|++|++.++|-..-... .+-..++.+.--+.++.+||
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~---------~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETD---------SGELNVVSINEEHGLLACGT 194 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccc---------cccceeeeecCccceEEecc
Confidence 3456777666663222 3666553 368999999999996543221 11122222222357889998
Q ss_pred ccCCcCCCcEEEEECCCCeE-EEEeeC---CCCCCCCCc--cEEEEECC-cEEEEEecCCCCcCCCcEEEEECCCCcEE
Q 010034 95 RFGSRRLGDFWVLDTDIWQW-SELTSF---GDLPSPRDF--AAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (519)
Q Consensus 95 ~~~~~~~~dv~~yd~~t~~W-~~~~~~---g~~P~~r~~--~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (519)
.++ .|+.+|+.+.+- ..+... ...|..-.. -++..+.+ |-=+.+|-.+| .+++||+.+.+=.
T Consensus 195 ~~g-----~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 195 EDG-----VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRASKPL 263 (703)
T ss_pred cCc-----eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccCCce
Confidence 665 477888866532 122111 112222111 22333444 44455554433 3899998877533
No 133
>smart00284 OLF Olfactomedin-like domains.
Probab=53.73 E-value=2.2e+02 Score=27.70 Aligned_cols=166 Identities=8% Similarity=-0.063 Sum_probs=75.5
Q ss_pred CCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCC---CcceeEEEEeCCeEEEE
Q 010034 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG---PRAFHIAVAIDCHMFIF 92 (519)
Q Consensus 16 ~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~---~R~~h~~~~~~~~iyv~ 92 (519)
+|.+=.|-..++.+ |.+|.-- .....+.+||+.+.+=..........-....|- +-...-.++..+-|+|+
T Consensus 70 Lp~~~~GtG~VVYn-gslYY~~-----~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 70 LPHAGQGTGVVVYN-GSLYFNK-----FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CCCccccccEEEEC-ceEEEEe-----cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 44444555556565 5666532 234779999999987543221100000000111 11112233444555554
Q ss_pred ccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCC
Q 010034 93 GGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTG 172 (519)
Q Consensus 93 GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~ 172 (519)
=....+.-.-.+-..|+.+-+-.+.=.+ ..|....+.+-.++ |.+|++-... .....=.+.||+.+++=..+. -
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~naFmvC--GvLY~~~s~~-~~~~~I~yayDt~t~~~~~~~--i 217 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSASNAFMIC--GILYVTRSLG-SKGEKVFYAYDTNTGKEGHLD--I 217 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEc-CCCcccccccEEEe--eEEEEEccCC-CCCcEEEEEEECCCCccceee--e
Confidence 2211111101133456655432222110 13333333222223 4899985321 111233678999988744432 1
Q ss_pred CCCCcccCeeEEEe---CCEEEEE
Q 010034 173 SVPPPRCGHTATMV---EKRLLIY 193 (519)
Q Consensus 173 ~~p~~r~~~~~~~~---~~~lyv~ 193 (519)
+.+.+...+++... +++||+.
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeccccccceeceeCCCCCeEEEE
Confidence 34444455666665 4689986
No 134
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=53.46 E-value=40 Score=27.04 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhhcCCCcccccccchhhHHHHHHHHHHHhhcccccCCCCCceeEEEEEecCCccceeccCcchhccc
Q 010034 418 IQATQVLRDHWKKSTPRSIPIKELGPLLRDYQRLIARHLANLQSTELGLPGKEAYTFYHLKNSSQMQTIHITAAKSLR 495 (519)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (519)
-..+..+-.++-...|.+.=+-||.+ .|+++|..+.-+-.. ++....++|.+.+..+.....|++.|+..
T Consensus 16 ~~~~~~l~~~~l~rVQnSvFeg~l~~--~~~~~l~~~~~kii~------~~~Dsi~iy~~~~~~~~~~~~iG~~~~~~ 85 (89)
T COG1343 16 VRKVAKLLKRGLQRVQNSVFEGELTP--ADLEKLKRRLKKIID------EDEDSIRIYPLRRRAARTREVIGPEKSED 85 (89)
T ss_pred HHHHHHHHHhhhhhheeeeeEEecCH--HHHHHHHHHHHhhhc------cccceEEEEEccchhhccceeccCCCCcc
Confidence 34556666777788999999999999 899999988876443 67788999999999999999998887753
No 135
>PRK10115 protease 2; Provisional
Probab=52.83 E-value=3.8e+02 Score=30.19 Aligned_cols=216 Identities=10% Similarity=-0.053 Sum_probs=104.2
Q ss_pred EEEECCcEEEEEcCcCCC-ccCCcEEEEEcCCCcE--EeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEccccCCcC
Q 010034 25 AVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLW--FQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR 100 (519)
Q Consensus 25 ~~~~~~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W--~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~ 100 (519)
.+-..++.-+++...... ....++|++++.+..- ..+-.. +........... +++..++..... .
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---------~~~~~~~~~~~s~d~~~l~i~~~~~--~ 245 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---------KDDTFYVSLHKTTSKHYVVIHLASA--T 245 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---------CCCCEEEEEEEcCCCCEEEEEEECC--c
Confidence 333434443444433322 3457899999998732 233221 112222233333 444333433332 3
Q ss_pred CCcEEEEEC--CCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECC-CCcEEEeccCCCCCCc
Q 010034 101 LGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPP 177 (519)
Q Consensus 101 ~~dv~~yd~--~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~p~~ 177 (519)
.+.++.|+. .+..|..+.. .+... .+... ..++.+|+.--.+. ....+...++. +.+|+.+-+ ....
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~ly~~tn~~~--~~~~l~~~~~~~~~~~~~l~~---~~~~ 315 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLP---RRKDH-EYSLD-HYQHRFYLRSNRHG--KNFGLYRTRVRDEQQWEELIP---PREN 315 (686)
T ss_pred cccEEEEECcCCCCCceEEEE---CCCCC-EEEEE-eCCCEEEEEEcCCC--CCceEEEecCCCcccCeEEEC---CCCC
Confidence 356888884 3444433331 22222 12222 33348888765432 23347777777 678998862 2111
Q ss_pred ccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEE---e-CCEEE-EEec
Q 010034 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS---G-GHYLL-LFGG 252 (519)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~---~-~~~iy-v~GG 252 (519)
+.--.+...++.|++..-..+ ...+..+|..+.....+.. +.+........ . ++.++ .+.+
T Consensus 316 ~~i~~~~~~~~~l~~~~~~~g----------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss 381 (686)
T PRK10115 316 IMLEGFTLFTDWLVVEERQRG----------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSS 381 (686)
T ss_pred CEEEEEEEECCEEEEEEEeCC----------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEec
Confidence 122233334777777654322 2345556766555555431 22222211111 1 13333 3333
Q ss_pred cCCCCCcccccceeCcEEEEEcCCCeEEEcccC
Q 010034 253 HGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 285 (519)
.. .-..+|.||+.+.+|+.+...
T Consensus 382 ~~----------~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 382 MT----------TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CC----------CCCEEEEEECCCCcEEEEEec
Confidence 22 236799999999888877653
No 136
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=51.84 E-value=3.3e+02 Score=29.15 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCcEEEEECCCC--eEEEEeeCCCCCCCCCccEEEE-----ECCc--EEEEEecCCCCcCCCcEEEEECCCCc--EEEe
Q 010034 101 LGDFWVLDTDIW--QWSELTSFGDLPSPRDFAAASA-----IGNR--KIVMYGGWDGKKWLSDVYVLDTISLE--WMQL 168 (519)
Q Consensus 101 ~~dv~~yd~~t~--~W~~~~~~g~~P~~r~~~~~~~-----~~~~--~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l 168 (519)
.+.++.+|..++ .|+.-....+...-+.....+. +..+ .+.++|..++ .++.+|..+.+ |+.-
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeE
Confidence 346999999877 5875432111100011111111 1111 2444554443 38999999876 7753
No 137
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.46 E-value=3e+02 Score=28.30 Aligned_cols=231 Identities=17% Similarity=0.114 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCcE-EeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCC
Q 010034 45 LSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (519)
Q Consensus 45 ~~~~~~yd~~~~~W-~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~ 123 (519)
.+.+.++|..+.+= ..++..+. ....+.+|.........+..|++-=.+ ...+|+.|.....=.... ..
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~---~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~~~~~~---~i 168 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGM---PVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPKNLKVT---TI 168 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE----TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSSCEEEE---EE
T ss_pred CCceeEeccccccceeecccccc---cccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEecccccccee---ee
Confidence 35788899877543 22322111 001144555444444556667774433 246888887654211222 24
Q ss_pred CCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeC-CEEEEEcccCCCCCc
Q 010034 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE-KRLLIYGGRGGGGPI 202 (519)
Q Consensus 124 P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 202 (519)
+.++.-|-.....+++.|+.+-. ..+.+-..|..+++-..+-..|..|.+..+..+.... +.++..+|.....-
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~- 243 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI- 243 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE-
T ss_pred cccccccccccCcccceeeeccc----ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec-
Confidence 46667777777766555555422 2346888999988766554445555554444444333 35565665432210
Q ss_pred ccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEe--CCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeE-
Q 010034 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG--GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW- 279 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W- 279 (519)
....-+.+.+ .+...|+.+. .++....++.+... ...+|+---.+. -.+.+.++|.++.+=
T Consensus 244 --~~ig~~~v~v--~d~~~wkvv~---~I~~~G~glFi~thP~s~~vwvd~~~~~---------~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 244 --PLIGTDPVSV--HDDYAWKVVK---TIPTQGGGLFIKTHPDSRYVWVDTFLNP---------DADTVQVIDKKTLKVV 307 (369)
T ss_dssp --EEEE--TTT---STTTBTSEEE---EEE-SSSS--EE--TT-SEEEEE-TT-S---------SHT-EEEEECCGTEEE
T ss_pred --ccccCCcccc--chhhcCeEEE---EEECCCCcceeecCCCCccEEeeccCCC---------CCceEEEEECcCccee
Confidence 0000111112 2345677766 33333333333333 335555311111 157899999988732
Q ss_pred EEcccCCCCCCCCcceEEEEe-CCEEEEEcc
Q 010034 280 KRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (519)
Q Consensus 280 ~~v~~~~~~p~~R~~~~~v~~-~~~iyv~GG 309 (519)
..+.. .+..|..|--..- |.++|+.-.
T Consensus 308 ~~i~~---~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 308 KTITP---GPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp E-HHH---HHT--EEEEEE-TTSSEEEEEEE
T ss_pred EEEec---cCCCcEeccEECCCCCEEEEEEe
Confidence 22222 1223344443333 456666443
No 138
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.83 E-value=2.6e+02 Score=27.36 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=61.9
Q ss_pred EEEECCcEEEEEcCcCCCccCCcEEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCC
Q 010034 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (519)
Q Consensus 25 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (519)
.|+.++.+-||+-|-. ...+-.-|+.++ .|+.+ ...|...+++++++. .|+|-+++.
T Consensus 16 LVV~~dskT~v~igSH----s~~~~avd~~sG~~~We~i------------lg~RiE~sa~vvgdf-VV~GCy~g~---- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH----SGIVIAVDPQSGNLIWEAI------------LGVRIECSAIVVGDF-VVLGCYSGG---- 74 (354)
T ss_pred EEEecCCceEEEEecC----CceEEEecCCCCcEEeehh------------hCceeeeeeEEECCE-EEEEEccCc----
Confidence 3445544544444432 345677788876 58775 456888888888887 667776653
Q ss_pred cEEEEECCCC--eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 103 DFWVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 103 dv~~yd~~t~--~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
+|..+..|+ -|.-... + . ...-+.+....+-|| +|-.+++ +|.+|+.+..
T Consensus 75 -lYfl~~~tGs~~w~f~~~--~--~-vk~~a~~d~~~glIy-cgshd~~-----~yalD~~~~~ 126 (354)
T KOG4649|consen 75 -LYFLCVKTGSQIWNFVIL--E--T-VKVRAQCDFDGGLIY-CGSHDGN-----FYALDPKTYG 126 (354)
T ss_pred -EEEEEecchhheeeeeeh--h--h-hccceEEcCCCceEE-EecCCCc-----EEEecccccc
Confidence 777777776 5765542 1 1 111122223333444 4544443 7888888765
No 139
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=48.51 E-value=3.8e+02 Score=28.83 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=71.5
Q ss_pred CccEEEEE-CCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEe--CCEEEEEcccCCCCCccc
Q 010034 128 DFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMG 204 (519)
Q Consensus 128 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 204 (519)
+..+++++ .++..+++||.++. +++|.+.-..-.+.. ..-..|..-+.+.+ ++..++.|-..
T Consensus 444 y~~s~vAv~~~~~~vaVGG~Dgk-----vhvysl~g~~l~ee~---~~~~h~a~iT~vaySpd~~yla~~Da~------- 508 (603)
T KOG0318|consen 444 YESSAVAVSPDGSEVAVGGQDGK-----VHVYSLSGDELKEEA---KLLEHRAAITDVAYSPDGAYLAAGDAS------- 508 (603)
T ss_pred cccceEEEcCCCCEEEEecccce-----EEEEEecCCccccee---eeecccCCceEEEECCCCcEEEEeccC-------
Confidence 33333333 45678888888764 788877765433322 22233444445554 45555555433
Q ss_pred ccccccccccccCCCC-----ceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeE
Q 010034 205 DLWALKGLIEEENETP-----GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (519)
Q Consensus 205 d~~~l~~v~~Yd~~t~-----~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W 279 (519)
..+..||..++ .|..-. +|...-+-.-+++++.-|+.+ ..|++|+.+.-.=
T Consensus 509 -----rkvv~yd~~s~~~~~~~w~FHt-------akI~~~aWsP~n~~vATGSlD------------t~Viiysv~kP~~ 564 (603)
T KOG0318|consen 509 -----RKVVLYDVASREVKTNRWAFHT-------AKINCVAWSPNNKLVATGSLD------------TNVIIYSVKKPAK 564 (603)
T ss_pred -----CcEEEEEcccCceecceeeeee-------eeEEEEEeCCCceEEEecccc------------ceEEEEEccChhh
Confidence 23344555444 443222 233222223566777777654 4578888653211
Q ss_pred -EEcccCCCCCCCCcceEEEEeCCEEEEEccCCC
Q 010034 280 -KRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (519)
Q Consensus 280 -~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~ 312 (519)
..+.... +....++..+++.-+|--|.+.
T Consensus 565 ~i~iknAH----~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 565 HIIIKNAH----LGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred heEecccc----ccCceeEEEecCceEEeccCcc
Confidence 2222210 1123455566777777777654
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.15 E-value=3.1e+02 Score=28.73 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=60.6
Q ss_pred CCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEe-CCEEEEEcccCCCCCccc
Q 010034 126 PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMG 204 (519)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 204 (519)
....++++...||-||..|-.++ -+-+||+.+.. .++ ..|.--.--....+ +|--|+.-+..+..
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~-----~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~~---- 412 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDG-----VVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDGS---- 412 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCc-----eEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCCe----
Confidence 34455666667777777664433 37788988776 444 44442222223333 33334443333221
Q ss_pred ccccccccccccCCCCc-eEEecCCCCCCCCcceeEEEE-eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEc
Q 010034 205 DLWALKGLIEEENETPG-WTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (519)
Q Consensus 205 d~~~l~~v~~Yd~~t~~-W~~i~~~g~~P~~r~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v 282 (519)
+..+|+...+ ...+. .+...--.+... ..+...+++|.+ -.||.|+-.+..|+++
T Consensus 413 -------V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~------------l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 413 -------VKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSD------------LQVYICKKKTKSWTEI 469 (506)
T ss_pred -------EEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecce------------eEEEEEecccccceee
Confidence 2333433222 11111 122111112222 335555666522 2467778889999999
Q ss_pred ccCCC
Q 010034 283 PIGNE 287 (519)
Q Consensus 283 ~~~~~ 287 (519)
.....
T Consensus 470 ~~~~~ 474 (506)
T KOG0289|consen 470 KELAD 474 (506)
T ss_pred ehhhh
Confidence 87644
No 141
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=47.19 E-value=3.3e+02 Score=27.77 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred EECCcEEEEEcCcCCCccCCcEEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcE
Q 010034 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (519)
Q Consensus 27 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv 104 (519)
.+.++++|+... + ..++.+|+.+.+ |+...... ...........+++||+- ..++ .+
T Consensus 65 ~~~dg~v~~~~~--~----G~i~A~d~~~g~~~W~~~~~~~---------~~~~~~~~~~~~G~i~~g-~~~g-----~~ 123 (370)
T COG1520 65 ADGDGTVYVGTR--D----GNIFALNPDTGLVKWSYPLLGA---------VAQLSGPILGSDGKIYVG-SWDG-----KL 123 (370)
T ss_pred EeeCCeEEEecC--C----CcEEEEeCCCCcEEecccCcCc---------ceeccCceEEeCCeEEEe-cccc-----eE
Confidence 556688988621 1 279999999876 96643210 001111112226776654 3333 68
Q ss_pred EEEECCCC--eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCC--cEEEec
Q 010034 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQLP 169 (519)
Q Consensus 105 ~~yd~~t~--~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~ 169 (519)
++||..++ .|+.-... . .+. .+.+++.++.+|+.- ..+.++.+|..|. .|+.-.
T Consensus 124 y~ld~~~G~~~W~~~~~~---~-~~~-~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 124 YALDASTGTLVWSRNVGG---S-PYY-ASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EEEECCCCcEEEEEecCC---C-eEE-ecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEec
Confidence 99999644 68776532 1 332 333445565777653 1244888887754 487544
No 142
>PRK01742 tolB translocation protein TolB; Provisional
Probab=45.36 E-value=3.8e+02 Score=28.01 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEcc-ccCCcCCCcEEEEECCCCeEEEEeeCCCCC
Q 010034 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGG-RFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (519)
Q Consensus 46 ~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG-~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 124 (519)
..++.+|+.++.-..+... +. ........-+++..+++. .++. .++|.+|+.++....+.. .+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~---------~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~---~~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASF---------RG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTS---GA 291 (429)
T ss_pred cEEEEEeCCCCceEEEecC---------CC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeecc---CC
Confidence 4688899888766555421 11 111122222444333433 2222 358999998888777652 11
Q ss_pred CCCCccEEEEECCcE-EEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCc
Q 010034 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (519)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (519)
. .....+...+++ |++.....+. ..+|.+|..+..-+.+. . ... .....-++ .|++.++
T Consensus 292 ~--~~~~~~wSpDG~~i~f~s~~~g~---~~I~~~~~~~~~~~~l~---~---~~~-~~~~SpDG~~ia~~~~------- 352 (429)
T PRK01742 292 G--NNTEPSWSPDGQSILFTSDRSGS---PQVYRMSASGGGASLVG---G---RGY-SAQISADGKTLVMING------- 352 (429)
T ss_pred C--CcCCEEECCCCCEEEEEECCCCC---ceEEEEECCCCCeEEec---C---CCC-CccCCCCCCEEEEEcC-------
Confidence 1 122233334444 5544433332 36788887665433332 1 011 11122244 4554433
Q ss_pred ccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEecc
Q 010034 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGH 253 (519)
Q Consensus 203 ~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~ 253 (519)
+.+..+|+.++.+..+... . ........-+++.+++++.
T Consensus 353 -------~~i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 -------DNVVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred -------CCEEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEc
Confidence 1233468888888776521 1 1111223346666666654
No 143
>smart00284 OLF Olfactomedin-like domains.
Probab=45.31 E-value=3e+02 Score=26.79 Aligned_cols=157 Identities=12% Similarity=-0.010 Sum_probs=79.9
Q ss_pred CCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCCCCC----CC--------ccEEEEECCcEE
Q 010034 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSP----RD--------FAAASAIGNRKI 140 (519)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~----r~--------~~~~~~~~~~~i 140 (519)
+|.+-.+...++.++.+|.--. ....+..||+.+.+-.... .+|.+ +. ..-.++.++| +
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-L 140 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENG-L 140 (255)
T ss_pred CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCc-e
Confidence 4555567778889999987433 2357999999998765333 13322 11 1223444554 4
Q ss_pred EEE-ecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC
Q 010034 141 VMY-GGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (519)
Q Consensus 141 yv~-GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t 219 (519)
+|+ ...... -.--+-++|+.|.+-++.=.+ ..+.+..+ .+.++=|.||++-...... -.-.+.||..+
T Consensus 141 WvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGvLY~~~s~~~~~--------~~I~yayDt~t 209 (255)
T smart00284 141 WVIYATEQNA-GKIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGILYVTRSLGSKG--------EKVFYAYDTNT 209 (255)
T ss_pred EEEEeccCCC-CCEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeEEEEEccCCCCC--------cEEEEEEECCC
Confidence 333 221111 111234667776543333211 23333333 4555678999985322211 13356789888
Q ss_pred CceEEecCCCCCCCCcceeEEEE---eCCEEEEEe
Q 010034 220 PGWTQLKLPGQAPSSRCGHTITS---GGHYLLLFG 251 (519)
Q Consensus 220 ~~W~~i~~~g~~P~~r~~~s~~~---~~~~iyv~G 251 (519)
++=..+.. +.+..-..+++.- .+.+||+.-
T Consensus 210 ~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 210 GKEGHLDI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred Cccceeee--eeccccccceeceeCCCCCeEEEEe
Confidence 76444431 2233333344443 345788753
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=44.20 E-value=6.3e+02 Score=30.19 Aligned_cols=159 Identities=10% Similarity=-0.014 Sum_probs=83.3
Q ss_pred CCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCCCC-------CC---CCCccEEEEECCc-EEEEEecCCCCcCCCc
Q 010034 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL-------PS---PRDFAAASAIGNR-KIVMYGGWDGKKWLSD 154 (519)
Q Consensus 86 ~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g~~-------P~---~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~ 154 (519)
++.+||....+ +.+++||+.++........|.. +. ...-..+++..++ .|||.-..+ +.
T Consensus 694 ~g~LyVad~~~-----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~ 763 (1057)
T PLN02919 694 NEKVYIAMAGQ-----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SS 763 (1057)
T ss_pred CCeEEEEECCC-----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----Ce
Confidence 57888874322 4589999988766554422111 00 0111233444343 588876432 56
Q ss_pred EEEEECCCCcEEEeccCCC-CC--------------Ccc--cCeeEEEe-CCEEEEEcccCCCCCccccccccccccccc
Q 010034 155 VYVLDTISLEWMQLPVTGS-VP--------------PPR--CGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (519)
Q Consensus 155 v~~yd~~t~~W~~l~~~~~-~p--------------~~r--~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd 216 (519)
+.+||+.++....+..... .+ ... .-.++++. ++.+||.-..+ +.+.+||
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------~rIrviD 831 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------HKIKKLD 831 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------CEEEEEE
Confidence 9999998776433221000 00 000 11222332 56788875321 4567789
Q ss_pred CCCCceEEecCCCCC-------CCCc--ceeEEEE-eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 217 NETPGWTQLKLPGQA-------PSSR--CGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 217 ~~t~~W~~i~~~g~~-------P~~r--~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
++++....+...|.. .... .-+.+++ .++++||.-.. .+.|.++|+.+.+
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------------Nn~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------------NSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------------CCEEEEEECCCCc
Confidence 988888776533311 0111 1123333 46678886542 2568888987765
No 145
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=43.74 E-value=1.7e+02 Score=29.66 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEeCCEEEEEccCCC
Q 010034 233 SSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (519)
Q Consensus 233 ~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~~~~iyv~GG~~~ 312 (519)
..+.|-++..++++++|-|..+ +.+-.+|++...--++-...+ .---++-++++-+|-||++|
T Consensus 358 gHkRGIAClQYr~rlvVSGSSD------------ntIRlwdi~~G~cLRvLeGHE-----eLvRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSD------------NTIRLWDIECGACLRVLEGHE-----ELVRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred cccccceehhccCeEEEecCCC------------ceEEEEeccccHHHHHHhchH-----HhhhheeecCceeeeccccc
Confidence 3455667778999998877532 567888887765433322111 11225677899999999988
Q ss_pred CCCccceEEecCCCcccc
Q 010034 313 KSTFGDIWWLVPEEDPIA 330 (519)
Q Consensus 313 ~~~~~D~w~l~~~~d~~~ 330 (519)
.- -+|-|....||..
T Consensus 421 ki---kvWdl~aaldpra 435 (499)
T KOG0281|consen 421 KI---KVWDLQAALDPRA 435 (499)
T ss_pred eE---EEEecccccCCcc
Confidence 53 3565565555543
No 146
>PTZ00420 coronin; Provisional
Probab=42.79 E-value=5e+02 Score=28.59 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=35.2
Q ss_pred eEEEEccccCCcCCCcEEEEECCCCeEE-EEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCc
Q 010034 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (519)
Q Consensus 88 ~iyv~GG~~~~~~~~dv~~yd~~t~~W~-~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (519)
.+++.||.++ .+.++|+.+.+=. .+. .+ ..-.+++...++.+++.|+.++ .+.+||+.+.+
T Consensus 139 ~iLaSgS~Dg-----tIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS-----FVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC-----eEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCCc
Confidence 4555666553 4788998876421 111 11 1123334445667777776543 38899998764
No 147
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=41.95 E-value=4.9e+02 Score=28.28 Aligned_cols=174 Identities=17% Similarity=0.115 Sum_probs=91.0
Q ss_pred CcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCCEEEEEcccCCCCCc----------cccc
Q 010034 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI----------MGDL 206 (519)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~d~ 206 (519)
...+|+-++.....+ ..+-.+|+.+.+=.... .. .+ .+..+-+-.+.|||..-....... ....
T Consensus 171 ~~~~y~p~~~~~~~~-~~i~s~dl~~~~~~~~~---~~-~g-~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~ 244 (521)
T PF09826_consen 171 CDIIYFPGGPSGSNY-TTITSIDLDPDKASDST---SV-LG-SGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEES 244 (521)
T ss_pred cceEEecCCCCCCcE-EEEEEEeCCCCCcccee---EE-Ee-cCCEEEEeCCcEEEEEecccccccccchhccccccccC
Confidence 336666664444433 35667777444321111 00 00 222333336788888654332100 0001
Q ss_pred ccccccccccCCCCceEEec---CCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcc
Q 010034 207 WALKGLIEEENETPGWTQLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (519)
Q Consensus 207 ~~l~~v~~Yd~~t~~W~~i~---~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 283 (519)
..-..++.|+++....+... ++|.+ ...+++--.+|.+-|+-..... +........|.++++|..-+.--++.
T Consensus 245 ~~~T~I~kf~~~~~~~~y~~sg~V~G~l---lnqFsmdE~~G~LRvaTT~~~~-~~~~~~~s~N~lyVLD~~L~~vG~l~ 320 (521)
T PF09826_consen 245 NESTTIYKFALDGGKIEYVGSGSVPGYL---LNQFSMDEYDGYLRVATTSGNW-WWDSEDTSSNNLYVLDEDLKIVGSLE 320 (521)
T ss_pred CCceEEEEEEccCCcEEEEEEEEECcEE---cccccEeccCCEEEEEEecCcc-cccCCCCceEEEEEECCCCcEeEEcc
Confidence 12245677787777776443 23322 3345566677777776543211 00112246789999996555555666
Q ss_pred cCCCCCCCCcceEEEEeCCEEEEEccCCCCCCccceEEecCCCc
Q 010034 284 IGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEED 327 (519)
Q Consensus 284 ~~~~~p~~R~~~~~v~~~~~iyv~GG~~~~~~~~D~w~l~~~~d 327 (519)
.+ .|..|. +++-.++++.|++-= ...+-++.+++..+
T Consensus 321 ~l--a~gE~I-ysvRF~Gd~~Y~VTF----rqvDPLfviDLsdP 357 (521)
T PF09826_consen 321 GL--APGERI-YSVRFMGDRAYLVTF----RQVDPLFVIDLSDP 357 (521)
T ss_pred cc--CCCceE-EEEEEeCCeEEEEEE----eecCceEEEECCCC
Confidence 54 344443 667788999998863 33455777776543
No 148
>PRK10115 protease 2; Provisional
Probab=39.44 E-value=6e+02 Score=28.63 Aligned_cols=211 Identities=10% Similarity=0.043 Sum_probs=100.3
Q ss_pred CcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEe-CCeEEEEccccCC-cCCCcEEEE
Q 010034 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGS-RRLGDFWVL 107 (519)
Q Consensus 30 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~-~~~~dv~~y 107 (519)
+++.++++-..++....++++.|+.++.. +.. ..+..+ ...+.. +++-+++...... ....++|++
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~--------~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPE--------LLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCc--------cccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44555555444455555677777766531 110 111112 233333 4444444444322 244789999
Q ss_pred ECCCCeE--EEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEEC--CCCcEEEeccCCCCCCcccCeeE
Q 010034 108 DTDIWQW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT--ISLEWMQLPVTGSVPPPRCGHTA 183 (519)
Q Consensus 108 d~~t~~W--~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~p~~r~~~~~ 183 (519)
++.|..- ..+-. -+............+++..++..... ..+.++.|+. .+..|..+. ..+.. .....
T Consensus 205 ~lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~ 275 (686)
T PRK10115 205 TIGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFL---PRRKD-HEYSL 275 (686)
T ss_pred ECCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEE---ECCCC-CEEEE
Confidence 9998832 33332 11122222222332434333443332 3356888883 344544333 12221 11223
Q ss_pred EEeCCEEEEEcccCCCCCcccccccccccccccCC-CCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccc
Q 010034 184 TMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRY 262 (519)
Q Consensus 184 ~~~~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~-t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 262 (519)
...++.+|+.--..... ..+...++. ..+|+.+-. ....+.--.+.+.++.+++..-..
T Consensus 276 ~~~~~~ly~~tn~~~~~---------~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~~~~l~~~~~~~-------- 335 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKN---------FGLYRTRVRDEQQWEELIP---PRENIMLEGFTLFTDWLVVEERQR-------- 335 (686)
T ss_pred EeCCCEEEEEEcCCCCC---------ceEEEecCCCcccCeEEEC---CCCCCEEEEEEEECCEEEEEEEeC--------
Confidence 33467888876443221 123334554 578988862 211222223444577777765332
Q ss_pred cceeCcEEEEEcCCCeEEEcc
Q 010034 263 DIYYNDTIILDRLSAQWKRLP 283 (519)
Q Consensus 263 ~~~~~~v~~yd~~t~~W~~v~ 283 (519)
-...++++|..+.....+.
T Consensus 336 --g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 336 --GLTSLRQINRKTREVIGIA 354 (686)
T ss_pred --CEEEEEEEcCCCCceEEec
Confidence 2355888887665555544
No 149
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=37.05 E-value=8e+02 Score=29.34 Aligned_cols=244 Identities=9% Similarity=-0.040 Sum_probs=118.0
Q ss_pred CcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCC-CCCCCCCCCcc--eeEEEEe--CCeEEEEccccCCcCCCcE
Q 010034 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNG-SNGQVGPGPRA--FHIAVAI--DCHMFIFGGRFGSRRLGDF 104 (519)
Q Consensus 30 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~-~~~~~~p~~R~--~h~~~~~--~~~iyv~GG~~~~~~~~dv 104 (519)
++.|||..- ..+.+.++|+....=..+...+.. ....+...++. -+.+++. ++.|||.-..+ +.+
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~I 648 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HAL 648 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceE
Confidence 467888653 235688899865432222211110 00000011111 2444444 45688874322 358
Q ss_pred EEEECCCCeEEEEeeCCCC----CC--------CCCccEEEEEC-CcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccC
Q 010034 105 WVLDTDIWQWSELTSFGDL----PS--------PRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT 171 (519)
Q Consensus 105 ~~yd~~t~~W~~~~~~g~~----P~--------~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~ 171 (519)
.++|+.++.=+.+...|.. .. -..-+..++.. ++.+||.... .+.+++||+.+.....+...
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecC
Confidence 8899988776655432210 00 01112334433 5688887532 24489999888776655422
Q ss_pred CCC-------CC---cccCeeEEEe--CCEEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCC-CCC-----
Q 010034 172 GSV-------PP---PRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQ-APS----- 233 (519)
Q Consensus 172 ~~~-------p~---~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~-~P~----- 233 (519)
|.. +. ...-..++.. ++.|||....+ +.+.+||+.++..+.+..... .+.
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------------SSIRALDLKTGGSRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCC------------CeEEEEECCCCcEEEEEecccccCcccccc
Confidence 211 00 0111223333 34688875432 455667777665433221000 000
Q ss_pred ---------Cc--ceeEEEE-eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCC-------CCCC--
Q 010034 234 ---------SR--CGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEP-------PPAR-- 292 (519)
Q Consensus 234 ---------~r--~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~-------p~~R-- 292 (519)
.. .-.++++ .++.+||.... .+.|.+||+.+.....+...+.. ..+.
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cCCCCchhhhhccCCceeeEeCCCcEEEEECC------------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 00 0112333 45678886642 35689999998888776543210 0011
Q ss_pred cceEEEEe-CCEEEEEccCCC
Q 010034 293 AYHSMTCL-GSLYLLFGGFDG 312 (519)
Q Consensus 293 ~~~~~v~~-~~~iyv~GG~~~ 312 (519)
.-++++.. ++++||.-..++
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCC
Confidence 12233332 578888865443
No 150
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.48 E-value=4.8e+02 Score=26.56 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=58.1
Q ss_pred CcEEEEEcCcCCCccCCcEEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEE
Q 010034 30 KSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (519)
Q Consensus 30 ~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~y 107 (519)
+++||+ |.+++ .+++||..+ ..|..-.. .. ++..-..+..++.+|+.- ..+.++.+
T Consensus 111 ~G~i~~-g~~~g-----~~y~ld~~~G~~~W~~~~~---------~~-~~~~~~~v~~~~~v~~~s------~~g~~~al 168 (370)
T COG1520 111 DGKIYV-GSWDG-----KLYALDASTGTLVWSRNVG---------GS-PYYASPPVVGDGTVYVGT------DDGHLYAL 168 (370)
T ss_pred CCeEEE-ecccc-----eEEEEECCCCcEEEEEecC---------CC-eEEecCcEEcCcEEEEec------CCCeEEEE
Confidence 466555 33333 799999964 46877531 11 334344444556666553 12457888
Q ss_pred ECCCC--eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCC--cEEEe
Q 010034 108 DTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQL 168 (519)
Q Consensus 108 d~~t~--~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l 168 (519)
|..++ .|..-...+ . ..+.....+ +.++.+|+-. .+ ....++.+|+.++ .|..-
T Consensus 169 ~~~tG~~~W~~~~~~~-~-~~~~~~~~~-~~~~~vy~~~-~~---~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 169 NADTGTLKWTYETPAP-L-SLSIYGSPA-IASGTVYVGS-DG---YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred EccCCcEEEEEecCCc-c-ccccccCce-eecceEEEec-CC---CcceEEEEEccCCcEeeeee
Confidence 88755 587544211 1 222222222 4454666642 21 1225889998755 48853
No 151
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=34.93 E-value=4e+02 Score=27.62 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=54.2
Q ss_pred ceEEEEECCcEEEEEcCcCCCccC-CcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCe-EEEEccccCCc
Q 010034 22 GHSAVNIGKSKVVVFGGLVDKRFL-SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSR 99 (519)
Q Consensus 22 gh~~~~~~~~~lyv~GG~~~~~~~-~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~ 99 (519)
||--..-.+..+++|.-.+.-... ..||..|.......++.. .++....+|-...-++. |+..+...+ .
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~y~~~~~~-~ 261 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--------RMEGESVGHEFWVPDGSTIWYDSYTPG-G 261 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----------TTEEEEEEEE-TTSS-EEEEEEETT-T
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--------CCCCcccccccccCCCCEEEEEeecCC-C
Confidence 454444334567777544443344 379999988766555542 23456677877777664 433333232 2
Q ss_pred CCCcEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCC
Q 010034 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD 147 (519)
Q Consensus 100 ~~~dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~ 147 (519)
.-.-+..||+.|..=+.+. .+| +..|-++.. +++++|--|.+
T Consensus 262 ~~~~i~~~d~~t~~~~~~~---~~p--~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLM---EMP--WCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEE-TTT--EEEEE---EE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CceEEEeeCCCCCCceEEE---eCC--ceeeeEEcC-CCCEEEecCCC
Confidence 2234777899987544443 244 455666665 44777765543
No 152
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=33.11 E-value=5.5e+02 Score=26.29 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=60.7
Q ss_pred CcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEEC
Q 010034 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (519)
Q Consensus 30 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~ 109 (519)
+..+.+-||.++ .-+.++..++.|-..- . ...-..-.++..+++.+...|+.++. +.++..
T Consensus 75 ~~~l~aTGGgDD-----~AflW~~~~ge~~~el-t--------gHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----LAFLWDISTGEFAGEL-T--------GHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKV 135 (399)
T ss_pred CCceEEecCCCc-----eEEEEEccCCcceeEe-c--------CCCCceEEEEEccCceEEEecCCCcc-----EEEEEc
Confidence 567888888653 3467788888864321 1 12222334455667888888988763 455555
Q ss_pred CCC--eEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEe
Q 010034 110 DIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (519)
Q Consensus 110 ~t~--~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l 168 (519)
.++ +|....+..++-=-+ ......|+++|-.++. +|+|.+.+..-.++
T Consensus 136 stg~~~~~~~~e~~dieWl~------WHp~a~illAG~~DGs-----vWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLK------WHPRAHILLAGSTDGS-----VWMWQIPSQALCKV 185 (399)
T ss_pred ccCceEEEeecccCceEEEE------ecccccEEEeecCCCc-----EEEEECCCcceeeE
Confidence 443 555432211110000 1122367777755543 89998888644444
No 153
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=31.40 E-value=6.5e+02 Score=26.58 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCcEEEEECCCCeEEEEeeCCCCCCC-CCccE-EEEECCcEEEEEecCCCCcCCCcEEEEECCCCcE
Q 010034 101 LGDFWVLDTDIWQWSELTSFGDLPSP-RDFAA-ASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (519)
Q Consensus 101 ~~dv~~yd~~t~~W~~~~~~g~~P~~-r~~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (519)
...+-++|..+++-..+. .+|.. ..... ...+.++++|+-=.. .....+-+|.+|+.|.+=
T Consensus 366 ~~~laI~d~~~kt~t~V~---glP~~~is~~~~~~~ve~G~aYi~Vtt-~~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVT---GLPADLISGFGNAPYVENGKAYIPVTT-EDGSDPYIYKIDPATATA 428 (435)
T ss_pred cceEEEEEccCceeEEec---cCChhhccccccceEeeCCEEEEEEee-cCCCceeEEEEcCccccc
Confidence 566889999888777665 46654 11222 344566777763221 122135699999988763
No 154
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=30.80 E-value=65 Score=34.69 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhhh-cCCCcccccccchhhHHHHHHHHHHH
Q 010034 417 RIQATQVLRDHWKK-STPRSIPIKELGPLLRDYQRLIARHL 456 (519)
Q Consensus 417 ~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~ 456 (519)
.-..+|++|+.=++ +...+|+=| ..|=||||||+..-
T Consensus 50 EIKKLQRlRdQIKtW~ss~dIKDK---~~L~d~RrlIE~~M 87 (575)
T KOG2150|consen 50 EIKKLQRLRDQIKTWQSSSDIKDK---DSLLDNRRLIEQRM 87 (575)
T ss_pred HHHHHHHHHHHHHhhhcccccccH---HHHHHHHHHHHHHH
Confidence 35688999987554 455566666 67779999999754
No 155
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=30.43 E-value=6.7e+02 Score=26.43 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred CccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEeeCC
Q 010034 42 KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (519)
Q Consensus 42 ~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~~g 121 (519)
+...++++++|-.-+.=-.++-. .|..|. +++-..++..|+.-= ...+-+++.|+..-+=-++- |
T Consensus 402 de~~N~vYilDe~lnvvGkltGl--------~~gERI-YAvRf~gdv~yiVTf----rqtDPlfviDlsNPenPkvl--G 466 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGL--------APGERI-YAVRFVGDVLYIVTF----RQTDPLFVIDLSNPENPKVL--G 466 (603)
T ss_pred CCccceeEEEcCCCcEEEEEecc--------CCCceE-EEEEEeCceEEEEEE----eccCceEEEEcCCCCCCcee--E
Q ss_pred CCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECC-CCcEEEeccCCCCCCcccCeeEEEeCC--EEEEEcccCC
Q 010034 122 DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPPRCGHTATMVEK--RLLIYGGRGG 198 (519)
Q Consensus 122 ~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~ 198 (519)
.+..|-+.--.--++++++.-+|-..+.--.+-+-+=|+. ...=.+...+.-..+.-+.|-+...+. .|+.+--.
T Consensus 467 eLKIPGfS~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay-- 544 (603)
T COG4880 467 ELKIPGFSEYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY-- 544 (603)
T ss_pred EEecCCchhhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc--
Q ss_pred CCCcccccccccccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe
Q 010034 199 GGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (519)
Q Consensus 199 ~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~ 278 (519)
..-+.|-.+.+ -.-+. ..-.....-.+...++.+|++|| +.+|+|| .+.
T Consensus 545 -----------~~gyif~iedg-~kl~k---~~e~k~na~RA~fi~dylY~vg~--------------~ev~~ld--ens 593 (603)
T COG4880 545 -----------LGGYIFFIEDG-SKLRK---RAERKLNADRAFFIKDYLYLVGG--------------NEVWKLD--ENS 593 (603)
T ss_pred -----------CccEEEEEecC-ceeee---hhhhcccceeeEEecceEEEecc--------------ceeEEec--cch
Q ss_pred EEEcc
Q 010034 279 WKRLP 283 (519)
Q Consensus 279 W~~v~ 283 (519)
|..+.
T Consensus 594 we~Vg 598 (603)
T COG4880 594 WEVVG 598 (603)
T ss_pred Hhhhh
No 156
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.41 E-value=68 Score=19.73 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.2
Q ss_pred cceEEEEECCcEEEEEcC
Q 010034 21 SGHSAVNIGKSKVVVFGG 38 (519)
Q Consensus 21 ~gh~~~~~~~~~lyv~GG 38 (519)
..|++++..++.||.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 568999988899999995
No 157
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=5e+02 Score=24.68 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=36.8
Q ss_pred EEEEeCCeEEEEccccCCcCCCcEEEEECCCCe--EEEEeeCCCCC-CCCCccEEEEECCcEEEEEecC
Q 010034 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGW 146 (519)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P-~~r~~~~~~~~~~~~iyv~GG~ 146 (519)
.....++++|.--|..+. +++.++|+.+++ |++. ++ ...++-+.+..++ .+|..-=.
T Consensus 50 GL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~-----l~~~~~FgEGit~~gd-~~y~LTw~ 109 (262)
T COG3823 50 GLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEK-----LAPDTVFGEGITKLGD-YFYQLTWK 109 (262)
T ss_pred ceeeeCCEEEEecccccc---ceeEEEeccCceEEEEee-----cCCccccccceeeccc-eEEEEEec
Confidence 445567888888776654 568999999664 4432 33 3445555566666 88887543
No 158
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.39 E-value=6.9e+02 Score=26.27 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=33.3
Q ss_pred EEEEECCCCe-EEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEec
Q 010034 104 FWVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 104 v~~yd~~t~~-W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~ 169 (519)
+.++|+.... ...++ ++....-.+......|...+++|.+ -.+|.|+-.+..|+++.
T Consensus 413 V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIK 470 (506)
T ss_pred EEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeee
Confidence 7888886543 22222 3333222233333456777777533 23777888899999997
No 159
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.95 E-value=5.4e+02 Score=24.94 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCCCcceEEEEECCcEEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCC-eEEEEcc
Q 010034 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGG 94 (519)
Q Consensus 16 ~P~~R~gh~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG 94 (519)
.|.|-.+...+.-..+.|+..||. ..+++.|+++++-++.- . ...-+-|+.+.-+. --.+-|+
T Consensus 112 ~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~-r---------GHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY-R---------GHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred ccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE-c---------CCcceeeeeeecccCcceeecC
Confidence 334444444443345689999983 45889999999976642 1 22234566665332 2233555
Q ss_pred ccCCcCCCcEEEEECCCCeEEEEeeC-CCCCCCC--Ccc-EEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEecc
Q 010034 95 RFGSRRLGDFWVLDTDIWQWSELTSF-GDLPSPR--DFA-AASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (519)
Q Consensus 95 ~~~~~~~~dv~~yd~~t~~W~~~~~~-g~~P~~r--~~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 170 (519)
.++ .+-+.|..|.+-.++-.. ......| .+- -+|...+..-.|+||-. .+-.+++.+.+-+.+-
T Consensus 176 EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrsse~t~vf- 243 (325)
T KOG0649|consen 176 EDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSSESTCVF- 243 (325)
T ss_pred CCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCCCceEEE-
Confidence 554 467788888766554321 1111122 111 13333343566777632 2455666666655543
Q ss_pred CCCCCCcccCeeEEEeCCEEEEEccc
Q 010034 171 TGSVPPPRCGHTATMVEKRLLIYGGR 196 (519)
Q Consensus 171 ~~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (519)
+.|. .-|-+.++++.+ ++||.
T Consensus 244 --pipa--~v~~v~F~~d~v-l~~G~ 264 (325)
T KOG0649|consen 244 --PIPA--RVHLVDFVDDCV-LIGGE 264 (325)
T ss_pred --eccc--ceeEeeeecceE-EEecc
Confidence 2222 223344445554 44543
No 160
>PTZ00421 coronin; Provisional
Probab=27.29 E-value=8.1e+02 Score=26.37 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=34.0
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCC
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI 111 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t 111 (519)
.+++.||.+ ..+.++|+.+.+-... ..+ ...........-++.+++.|+.++ .+.+||+.+
T Consensus 139 ~iLaSgs~D-----gtVrIWDl~tg~~~~~-l~~--------h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rs 199 (493)
T PTZ00421 139 NVLASAGAD-----MVVNVWDVERGKAVEV-IKC--------HSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRD 199 (493)
T ss_pred CEEEEEeCC-----CEEEEEECCCCeEEEE-EcC--------CCCceEEEEEECCCCEEEEecCCC-----EEEEEECCC
Confidence 466666653 3477888877642211 110 111111122223567777777653 488999987
Q ss_pred Ce
Q 010034 112 WQ 113 (519)
Q Consensus 112 ~~ 113 (519)
++
T Consensus 200 g~ 201 (493)
T PTZ00421 200 GT 201 (493)
T ss_pred Cc
Confidence 65
No 161
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=26.91 E-value=6.5e+02 Score=25.15 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=43.2
Q ss_pred cEEEEECCCCeEEEEeeCCCCCCCCCccEEEEECCcEEEEEecCCCCcCCCcEEEEECCCCcEEEeccCCCCCCcccCee
Q 010034 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (519)
Q Consensus 103 dv~~yd~~t~~W~~~~~~g~~P~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~ 182 (519)
.+-.||..+++-...- .....--.++..++ .=.+.||.++. +-+||+.+..=.++- ..-.+.. +
T Consensus 36 slrlYdv~~~~l~~~~-----~~~~plL~c~F~d~-~~~~~G~~dg~-----vr~~Dln~~~~~~ig---th~~~i~--c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKF-----KHGAPLLDCAFADE-STIVTGGLDGQ-----VRRYDLNTGNEDQIG---THDEGIR--C 99 (323)
T ss_pred cEEEEeccchhhhhhe-----ecCCceeeeeccCC-ceEEEeccCce-----EEEEEecCCcceeec---cCCCceE--E
Confidence 4788999887433221 11111123333444 44556777654 889999998877664 2222211 1
Q ss_pred EEE-eCCEEEEEcccCC
Q 010034 183 ATM-VEKRLLIYGGRGG 198 (519)
Q Consensus 183 ~~~-~~~~lyv~GG~~~ 198 (519)
+.. .....+|.||++.
T Consensus 100 i~~~~~~~~vIsgsWD~ 116 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDK 116 (323)
T ss_pred EEeeccCCeEEEcccCc
Confidence 111 2355678888764
No 162
>PRK01029 tolB translocation protein TolB; Provisional
Probab=25.41 E-value=8e+02 Score=25.70 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=35.3
Q ss_pred cccccccCCCCceEEecCCCCCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEccc
Q 010034 210 KGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (519)
Q Consensus 210 ~~v~~Yd~~t~~W~~i~~~g~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 284 (519)
..++.||+.+++.+.+... +..-.. ....-+++.+++...... ...+|.+|+.+.+.+.+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~~~~~~-p~wSpDG~~L~f~~~~~g---------~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---PENKES-PSWAIDSLHLVYSAGNSN---------ESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---CCCccc-eEECCCCCEEEEEECCCC---------CceEEEEECCCCCEEEeec
Confidence 3466789999998887621 211111 122234444444332221 2578999998888877754
No 163
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=25.23 E-value=6.2e+02 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=13.3
Q ss_pred cEEEEEcCcCCCccCCcEEEEEcC
Q 010034 31 SKVVVFGGLVDKRFLSDVVVYDID 54 (519)
Q Consensus 31 ~~lyv~GG~~~~~~~~~~~~yd~~ 54 (519)
.+.+++||+..+. +.++.+|+.
T Consensus 95 wktilvggmg~GG--~~~yALDVT 116 (335)
T PF05567_consen 95 WKTILVGGMGRGG--RGYYALDVT 116 (335)
T ss_dssp EEEEEEEE-TTS---SEEEEEE-S
T ss_pred ceEEEEeCCCCCc--ceEEEEecc
Confidence 4789999986443 346777766
No 164
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=24.23 E-value=6.3e+02 Score=24.08 Aligned_cols=228 Identities=16% Similarity=0.200 Sum_probs=104.3
Q ss_pred CcEEeeeecCCCCCCCCCCCCcceeEEEEe--CCeEEEEc--cccCCcCCC-c-EEEEECC-CCeEEEEeeCC---CCCC
Q 010034 56 KLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFG--GRFGSRRLG-D-FWVLDTD-IWQWSELTSFG---DLPS 125 (519)
Q Consensus 56 ~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~G--G~~~~~~~~-d-v~~yd~~-t~~W~~~~~~g---~~P~ 125 (519)
.+|.......+ .+.+..+....+.+. +++|++|- +........ . .+....+ -.+|+...... ....
T Consensus 30 ~tWs~~~~v~~----~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~ 105 (275)
T PF13088_consen 30 KTWSEPRIVAD----GPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNF 105 (275)
T ss_dssp TEEEEEEEEET----STBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSC
T ss_pred CeeCCCEEEee----ccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccce
Confidence 56988765422 011223334444443 78888886 222211111 1 1355555 45898775210 0111
Q ss_pred CCCccE-EEEECCcEEEEEecCCCCcCCCcEEEEECC-CCcEEEeccCCCCCCcccCeeEEE-e-CCEEEEEcccCCCCC
Q 010034 126 PRDFAA-ASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPPRCGHTATM-V-EKRLLIYGGRGGGGP 201 (519)
Q Consensus 126 ~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~ 201 (519)
...... ...+.++++++..=............|... -.+|+...+.. +.......+.+ . +++|+++--.. ...
T Consensus 106 ~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~ 182 (275)
T PF13088_consen 106 SGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND 182 (275)
T ss_dssp EECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST
T ss_pred eccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC
Confidence 111122 244557788776211111123334445555 45599887221 22233333333 3 67888876442 111
Q ss_pred cccccccccccccc-cCCCCceEEecCCCCCCCCcceeEEEE-eCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeE
Q 010034 202 IMGDLWALKGLIEE-ENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (519)
Q Consensus 202 ~~~d~~~l~~v~~Y-d~~t~~W~~i~~~g~~P~~r~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W 279 (519)
.. ...+ .-...+|+..... .+|.+.....++. .++.++++....... ..-.+++-.-...+|
T Consensus 183 ---~~-----~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-------~~l~l~~S~D~g~tW 246 (275)
T PF13088_consen 183 ---DI-----YISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-------SNLSLYVSEDGGKTW 246 (275)
T ss_dssp ---EE-----EEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-------EEEEEEEECTTCEEE
T ss_pred ---cE-----EEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-------CceEEEEEeCCCCcC
Confidence 11 1112 2345689986522 4566555555554 456888887732211 112233333347899
Q ss_pred EEcccCCCCCCCCcceE-EEEe-CCEEEE
Q 010034 280 KRLPIGNEPPPARAYHS-MTCL-GSLYLL 306 (519)
Q Consensus 280 ~~v~~~~~~p~~R~~~~-~v~~-~~~iyv 306 (519)
.........+...+++. ++.. +++|+|
T Consensus 247 ~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 247 SRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 87655432222234443 4444 568886
No 165
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.65 E-value=8e+02 Score=25.11 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=65.0
Q ss_pred EEEEEcCcCCCccCCcEEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccC----CcCCCcEEEE
Q 010034 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG----SRRLGDFWVL 107 (519)
Q Consensus 32 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~----~~~~~dv~~y 107 (519)
.+||.-.... ...+.+.++|..+.+-...-. .+..|| +.....+..+|+.-.+.. +...+.+.+|
T Consensus 14 ~v~V~d~~~~-~~~~~v~ViD~~~~~v~g~i~--------~G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 14 RVYVLDPGHF-AATTQVYTIDGEAGRVLGMTD--------GGFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVI 82 (352)
T ss_pred EEEEECCccc-ccCceEEEEECCCCEEEEEEE--------ccCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 4566544211 112789999998855332211 122333 222234568999876422 3345679999
Q ss_pred ECCCCeEEE-EeeCCCCCCCC-----CccEEEEECCc-EEEEEecCCCCcCCCcEEEEECCCCcEEE
Q 010034 108 DTDIWQWSE-LTSFGDLPSPR-----DFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (519)
Q Consensus 108 d~~t~~W~~-~~~~g~~P~~r-----~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (519)
|+.|.+-.. ++. .+.|| .-+..++-.+| .+||. ....-+.+-+.|+.+++-..
T Consensus 83 D~~t~~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~----n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 83 DPQTHLPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFY----QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred ECccCcEEeEEcc---CCCchhhccCccceEEECCCCCEEEEe----cCCCCCEEEEEECCCCcEEE
Confidence 999987653 331 23333 22233343444 56765 22235678889988887655
No 166
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=23.28 E-value=8.9e+02 Score=25.49 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCcEEEEECCCCcEEEeccCCCCCCcccCeeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEecCCCC
Q 010034 152 LSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQ 230 (519)
Q Consensus 152 ~~~v~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~v~~Yd~~t~~W~~i~~~g~ 230 (519)
..++|.+|+.+.+=.++. . ......+....-++ +|+..-...+. ..++.||++...-+++...+.
T Consensus 261 ~~~iy~~dl~~~~~~~Lt---~-~~gi~~~Ps~spdG~~ivf~Sdr~G~----------p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLT---N-GFGINTSPSWSPDGSKIVFTSDRGGR----------PQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred CccEEEEcCCCCcceecc---c-CCccccCccCCCCCCEEEEEeCCCCC----------cceEEECCCCCceeEeeccCC
Confidence 467999999988744443 1 12222233333344 55554333221 356778988888877763321
Q ss_pred CCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCe-EEEcccC
Q 010034 231 APSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ-WKRLPIG 285 (519)
Q Consensus 231 ~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~v~~~ 285 (519)
...+....-+++.++|-+.. .+ . -++..+|+.+.. |+.+...
T Consensus 327 ----~~~~p~~SpdG~~i~~~~~~-~g-------~-~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 327 ----GNSNPVWSPDGDKIVFESSS-GG-------Q-WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred ----CCcCccCCCCCCEEEEEecc-CC-------c-eeeEEeccCCCCcEEEcccc
Confidence 11123333444444444433 22 1 568888887766 8887664
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=22.89 E-value=9.1e+02 Score=27.26 Aligned_cols=71 Identities=8% Similarity=0.024 Sum_probs=38.6
Q ss_pred eEEEEECCcEEEEEcCcCCCccCCcEEE-EEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEcc
Q 010034 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVV-YDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGG 94 (519)
Q Consensus 23 h~~~~~~~~~lyv~GG~~~~~~~~~~~~-yd~~~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG 94 (519)
.-.|+++|..|||+-=.+-.+. ..++. +--.+..|..-...-+..+.+....||.++..|.-++.|-+|+=
T Consensus 338 klscVYndhSlYvWDvrD~~kv-gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 338 KLSCVYNDHSLYVWDVRDVNKV-GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred eEEEEEcCceEEEEeccccccc-cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 3456677778888776543222 11111 11133455432211111122344578899999999998888863
No 168
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.65 E-value=9.1e+02 Score=24.98 Aligned_cols=96 Identities=9% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCcEEeeeecCCCCCCCCCCCCcceeEEEEeCCeEEEEccccCCcCCCcEEEEECCCCeEEEEee--CCCCCCCC--Ccc
Q 010034 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTS--FGDLPSPR--DFA 130 (519)
Q Consensus 55 ~~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~dv~~yd~~t~~W~~~~~--~g~~P~~r--~~~ 130 (519)
.+.|+.+.. ..-..--++.++|++|++.- ...++.++.+- .-.++.+ .+++..++ ...
T Consensus 189 ~~~Wt~l~~-----------~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALKQ-----------MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEccC-----------CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 389999842 12235667888999999821 23477777432 1122221 01111111 112
Q ss_pred EEEEECCcEEEEEecCCCCc--------------CCCcEEEEECCCCcEEEec
Q 010034 131 AASAIGNRKIVMYGGWDGKK--------------WLSDVYVLDTISLEWMQLP 169 (519)
Q Consensus 131 ~~~~~~~~~iyv~GG~~~~~--------------~~~~v~~yd~~t~~W~~l~ 169 (519)
..+.. .|+++++....... ..=.++..|....+|.++.
T Consensus 251 yLVEs-~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~ 302 (373)
T PLN03215 251 RFVEC-CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVK 302 (373)
T ss_pred eEEEE-CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEec
Confidence 23333 35788887742110 1113566788899999997
No 169
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.60 E-value=2.4e+02 Score=18.22 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=14.3
Q ss_pred EECCcEEEEEcCcCCCccCCcEEEEEcCC
Q 010034 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDN 55 (519)
Q Consensus 27 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 55 (519)
.+.+++||+.+. -..++++|+++
T Consensus 18 ~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T------TSEEEEEETT-
T ss_pred EEECCEEEEEcC------CCEEEEEeCCC
Confidence 344578888765 25688888764
No 170
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=21.38 E-value=9.8e+02 Score=25.28 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=35.0
Q ss_pred cccccccCCCCceEEecCCCCCCCC---cceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeE
Q 010034 210 KGLIEEENETPGWTQLKLPGQAPSS---RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (519)
Q Consensus 210 ~~v~~Yd~~t~~W~~i~~~g~~P~~---r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W 279 (519)
..+.++|..+.+-+.+. .+|.. ..+-+..+.++++|+-=..... -.+-||.+|+.+.+=
T Consensus 367 ~~laI~d~~~kt~t~V~---glP~~~is~~~~~~~ve~G~aYi~Vtt~~g--------~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 367 KKLAIFDVSNKTFTWVT---GLPADLISGFGNAPYVENGKAYIPVTTEDG--------SDPYIYKIDPATATA 428 (435)
T ss_pred ceEEEEEccCceeEEec---cCChhhccccccceEeeCCEEEEEEeecCC--------CceeEEEEcCccccc
Confidence 44556788888877775 45544 3333445577777774322211 124589999887653
No 171
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=21.20 E-value=12 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcccccCCCCCceeEEEEEecCCc
Q 010034 447 DYQRLIARHLANLQSTELGLPGKEAYTFYHLKNSS 481 (519)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (519)
+|++|+++.......+..++--...||||+.|.-.
T Consensus 51 eYr~lv~~~l~~~r~~~l~Ll~~~L~r~y~~K~I~ 85 (90)
T PF12247_consen 51 EYRKLVTESLLPLRCQALNLLTQRLHRYYQIKKIK 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccceE
Confidence 79999987776666666677777789999988644
No 172
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.80 E-value=7.9e+02 Score=23.97 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=36.1
Q ss_pred CCCCCcceeEEEEeCCEEEEEeccCCCCCcccccceeCcEEEEEcCCCeEEEcccCCCCCCCCcceEEEEe-CCEEEEEc
Q 010034 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (519)
Q Consensus 230 ~~P~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~p~~R~~~~~v~~-~~~iyv~G 308 (519)
.+|......+.. -+..+||.||.. -.++.||..+..=...-..+. +-.-|++-.. ++.+|..|
T Consensus 222 k~P~nV~SASL~-P~k~~fVaGged------------~~~~kfDy~TgeEi~~~nkgh---~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 222 KMPCNVESASLH-PKKEFFVAGGED------------FKVYKFDYNTGEEIGSYNKGH---FGPVHCVRFSPDGELYASG 285 (334)
T ss_pred cCcccccccccc-CCCceEEecCcc------------eEEEEEeccCCceeeecccCC---CCceEEEEECCCCceeecc
Confidence 455443322222 344799999854 236777776654222211111 2223443333 78999999
Q ss_pred cCCCC
Q 010034 309 GFDGK 313 (519)
Q Consensus 309 G~~~~ 313 (519)
-.+|.
T Consensus 286 SEDGT 290 (334)
T KOG0278|consen 286 SEDGT 290 (334)
T ss_pred CCCce
Confidence 87764
Done!