Your job contains 1 sequence.
>010035
MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR
WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK
HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID
YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT
LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS
SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS
FFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELH
GVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKK
PGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010035
(519 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 1078 4.3e-109 1
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 279 1.0e-42 4
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 267 7.4e-41 3
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 262 2.2e-39 3
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 267 2.4e-39 4
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 267 2.4e-39 4
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 257 4.5e-39 4
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 257 4.5e-39 4
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 259 1.4e-37 3
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 239 6.5e-33 2
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 200 8.6e-30 3
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 242 6.4e-27 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 140 5.8e-24 5
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 131 1.8e-20 4
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 119 2.1e-13 4
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 160 3.6e-09 1
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 149 4.4e-08 2
CGD|CAL0001657 - symbol:APN2 species:5476 "Candida albica... 107 3.1e-06 3
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 134 4.7e-06 1
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 117 4.7e-06 2
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 117 4.7e-06 2
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 135 1.8e-05 1
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 129 2.3e-05 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 128 2.8e-05 1
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 128 3.0e-05 1
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 126 3.8e-05 2
UNIPROTKB|E1C286 - symbol:E1C286 "Uncharacterized protein... 110 5.5e-05 3
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 125 6.4e-05 1
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 125 6.4e-05 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 125 6.5e-05 1
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 6.5e-05 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 6.5e-05 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 6.5e-05 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 121 6.9e-05 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 129 9.1e-05 2
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 122 0.00014 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 122 0.00014 1
RGD|1310562 - symbol:Neil3 "nei endonuclease VIII-like 3 ... 127 0.00018 2
UNIPROTKB|F1N383 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00019 1
UNIPROTKB|Q3MHN7 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00019 1
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 129 0.00026 2
ZFIN|ZDB-GENE-041114-18 - symbol:neil3 "nei endonuclease ... 123 0.00030 1
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 119 0.00030 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 113 0.00098 1
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 217/402 (53%), Positives = 280/402 (69%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RW
Sbjct: 120 EGLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRW 179
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKH
Sbjct: 180 ECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKH 239
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +Y
Sbjct: 240 PERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEY 299
Query: 182 KRWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 240
KR+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQT
Sbjct: 300 KRFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQT 359
Query: 241 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 300
LVSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 360 LVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSF 416
Query: 301 SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS 360
N+ + G T+ E + ++ + S + SS D RKKA+K Q QLSLKS
Sbjct: 417 ENKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKS 474
Query: 361 FFHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 399
FF S V++ D ++S +S + S+T+ ++S +E E
Sbjct: 475 FFTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
Score = 264 (98.0 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 74/213 (34%), Positives = 107/213 (50%)
Query: 296 VYCSSSNQESE----GEF-TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 350
V CSSS Q + G+ T + NC S ++ + S + S V A A
Sbjct: 378 VSCSSSTQSNTSSICGDISTGPLRNC-GSMGISLEKSC---SFENKSTSGVTEAETVAAT 433
Query: 351 SQLGQLS--LKSFFHKRSNVSHDDNNS----ITDTSLNVNNSVTDTSLSQEEVPESHHHS 404
+ LS +++ + N+S D + I + L++ + T S S +
Sbjct: 434 GSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYV 493
Query: 405 NKIPVTDY-SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 463
+ P + S + + G S + E+ K++N+ AL+EW+RIQ LM+ SI
Sbjct: 494 SSSPSSQVESITEPNVSGKEDSEPTTSTQEQDQTGSSAKQKNDAALMEWQRIQNLMQNSI 553
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 279 (103.3 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 62/165 (37%), Positives = 92/165 (55%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H G L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL 279
Score = 191 (72.3 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 433 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 492
E+K K K+ W+ + + +PLC GH+EPCV R VKK GP FGR+F++C
Sbjct: 435 EEKNKVPESKDEKGERTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMC 493
Query: 493 ARAEGPASNPEANCGYFKWA 512
AR GP S+P + C +F W+
Sbjct: 494 ARPRGPPSDPSSRCNFFLWS 513
Score = 75 (31.5 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 45 (20.9 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 340 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 399
H R RK + Q +L S+F S++S + + +L + +T T + EEV
Sbjct: 374 HSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQ--TSGVELPTLPLVGPLT-TPKTAEEVAT 430
Query: 400 SH--HHSNKIP 408
+ NK+P
Sbjct: 431 ATVLEEKNKVP 441
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 267 (99.0 bits), Expect = 7.4e-41, Sum P(3) = 7.4e-41
Identities = 62/165 (37%), Positives = 94/165 (56%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H G + NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 176 HLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQ 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
+G G F D +R P+++ A+TCW + TGA NYG+RID++L
Sbjct: 236 AGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVL 280
Score = 195 (73.7 bits), Expect = 7.4e-41, Sum P(3) = 7.4e-41
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 502 PEANCGYFKWA 512
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
Score = 80 (33.2 bits), Expect = 7.4e-41, Sum P(3) = 7.4e-41
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
GSDH PV L P +P P L +R+LP G Q ++ L++ E
Sbjct: 301 GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 262 (97.3 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 62/165 (37%), Positives = 91/165 (55%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H G L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL 280
Score = 190 (71.9 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
Score = 77 (32.2 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
GSDH PV L V +P P L +R+LP G Q ++ L+ E
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 267 (99.0 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 63/165 (38%), Positives = 93/165 (56%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H G L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 261
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 262 SLPAESNST 270
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 343 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 373
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 267 (99.0 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 63/165 (38%), Positives = 93/165 (56%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H G L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 261
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 262 SLPAESNST 270
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 2.4e-39, Sum P(4) = 2.4e-39
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 343 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 373
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 257 (95.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 61/165 (36%), Positives = 92/165 (55%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H G L NVY P AD+ R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 246
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 343 RARKKAKKSQLGQLSLKSFFHKRSN 367
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 257 (95.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 61/165 (36%), Positives = 92/165 (55%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H G L NVY P AD+ R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 246
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 343 RARKKAKKSQLGQLSLKSFFHKRSN 367
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 259 (96.2 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 61/165 (36%), Positives = 94/165 (56%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFF 54
+ +F++++L +DSEGR ++T H G L NVY P A + R+ FK++F+
Sbjct: 115 MNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML--VE-- 108
+LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L +E
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYP 234
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 235 AGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL 279
Score = 178 (67.7 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 464 MPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
Score = 75 (31.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 202 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 239 (89.2 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 96/340 (28%), Positives = 142/340 (41%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 90
+ NVY PRAD + R +FKLQF+ +LQ R E +L G + ++GD+N + ID CD
Sbjct: 137 VINVYCPRADPDKPERKEFKLQFYRLLQCRAEAILSSGSHVIILGDVNTSHRPIDHCDPD 196
Query: 91 P--DFAKNEFRIWFRSMLVE----------------------SGGSFFDVFRSKHPERRE 126
+F N R W L E SGG F D FR HP+R
Sbjct: 197 DVDNFEDNPGRKWLDQFLFETAENSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSN 256
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
A+TCW + TGA Q NYGTRID+I +H+ V DI+ + +
Sbjct: 257 AFTCWSTLTGARQTNYGTRIDYIF------------SNHSLVKTFFIGVDIMPEVEG--S 302
Query: 187 GNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE--------------IPQHSTPSLAS-RYL 231
+ P W +S L+ S P +C +PE IP+ S +S + L
Sbjct: 303 DHCPVW-AQLSCTLQSSPRCPP-VCTRHMPEFIGRQQKLSRFLFKIPEKQNISNSSEKSL 360
Query: 232 PIIRG---VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 288
P + +++ L V+ K+ V K+ P + T + ++ +N
Sbjct: 361 PGSQDAGEIRENLNPVVQKQNVGKKR---------PTDREDTNAHKSKKSKTTKTESNA- 410
Query: 289 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTI 328
G L + Q + K IE+C+D S+S I
Sbjct: 411 -KGSLLAFFKPKQTQLIPTK-EKQIESCQDGPGTGSNSKI 448
Score = 196 (74.1 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 46/115 (40%), Positives = 64/115 (55%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHV 56
+ + +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +
Sbjct: 104 ELTSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRL 162
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES 109
LQ R E +L G + ++GD+N + ID CD +F N R W L E+
Sbjct: 163 LQCRAEAILSSGSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFET 217
Score = 195 (73.7 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 517
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W K K
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV-EKGK 558
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 200 (75.5 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 55/163 (33%), Positives = 79/163 (48%)
Query: 5 EDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFFH 55
++F+++EL +DSEGR +T H G L NVY P AD R+ FK++F+
Sbjct: 123 DEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYR 182
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGG-- 111
+LQ R E LL G + ++GDLN A ID CDA F N R W + GG
Sbjct: 183 LLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFQSNPLREWLDYSRMNPGGEQ 242
Query: 112 ---SFFDVFRSK-HPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
S F V+ HP ++ + W + + Y ID++L
Sbjct: 243 APVSLFCVYYIYLHPHQQWVWEEWTPLSSSYHVCYIVSIDYVL 285
Score = 190 (71.9 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
K+ V W+ + + +PLC GH+EPCV R VKK GP FGR F++CAR GP S+
Sbjct: 449 KDEKEVRTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSD 507
Query: 502 PEANCGYFKWA 512
P + C +F W+
Sbjct: 508 PSSRCNFFLWS 518
Score = 57 (25.1 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 340 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 399
H R RK + Q SL S+F SN+S + + +L + + +T T ++E
Sbjct: 379 HSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAMA 436
Query: 400 SH-HHSNKIP 408
+ NK+P
Sbjct: 437 TVVKEKNKVP 446
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 242 (90.2 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 62/178 (34%), Positives = 92/178 (51%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFV 73
IDSEGRC++ D FIL VY P E+ R++++ F+ L++R E L+ +G R+I +
Sbjct: 131 IDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRERIERLIKEGNRKIIL 188
Query: 74 VGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESG-GSFFDVFRSKHPERRE 126
VGD+NI ID D ++ E R W R +L+ S G D+ R +HP R+
Sbjct: 189 VGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKG 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYK 182
+TCW + NYGTRID+ L L Q D+ + + H C + +D K
Sbjct: 249 MFTCWNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDH---CPVYLDLK 303
Score = 133 (51.9 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 422 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 481
V+ V ++ + G K N A W++I E + PLC+GHKEPC V+KP
Sbjct: 419 VSIEVLDNNNESDIGLTVKKKVENGNA---WKQI--FSERAPPLCEGHKEPCKYLTVRKP 473
Query: 482 GPTFGRRFFVCARAEG 497
G +GR+F++CAR G
Sbjct: 474 GINYGRKFWICARPVG 489
Score = 57 (25.1 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 314 ENCRDSANVASHSTITQGSSN-HISPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNV 368
EN SA+ S T+++ +S + + ++ R+K + L Q K +K +V
Sbjct: 360 ENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDV 419
Query: 369 SHD--DNNSITDTSLNVNNSV 387
S + DNN+ +D L V V
Sbjct: 420 SIEVLDNNNESDIGLTVKKKV 440
Score = 55 (24.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 179 IDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGE 214
IDY P P W + + GSDH PVY+ L E
Sbjct: 268 IDYTLATPDLLP-WVQDADIMAEVMGSDHCPVYLDLKE 304
Score = 52 (23.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 247 KREVAKQGKSCKFSGSLPAESNSTGDTEDCS-ENVDRSLNNYCDSGI 292
KR +Q K F E T TED S E +D NN D G+
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN--NNESDIGL 434
Score = 39 (18.8 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 292 ILQGVYCSSSNQESEGEFTK 311
IL GVYC ++ E+ E+ +
Sbjct: 146 ILIGVYCPVNSGENRLEYRR 165
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 140 (54.3 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E SK +L +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 121 IEQLSKLKLDAETLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARV 178
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK 95
L+ G+R+FV GD+NI+ ID A + K
Sbjct: 179 RNLVALGKRVFVTGDINISRGEIDAAHAAENIKK 212
Score = 127 (49.8 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
P C H E C++ KKPGP FGR F++C R GP+ N E C F WA
Sbjct: 552 PKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
Score = 123 (48.4 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 252 FDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS 290
Score = 44 (20.5 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 200 LEGSDHAPVY 209
L GSDH PVY
Sbjct: 306 LMGSDHCPVY 315
Score = 44 (20.5 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 292 ILQGVYCSSSNQESEGEFTKTIENCRDS 319
+L G+YC ++ ES F + + D+
Sbjct: 149 VLIGLYCPANRDESRDAFRQNFLDLMDA 176
Score = 42 (19.8 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 353 LGQLSLKSFFHKRSNVSHDDN 373
+GQ +LK FF + + DN
Sbjct: 461 IGQSTLKGFFKPKCTLEPKDN 481
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 131 (51.2 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 317 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 376
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 377 TDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS----CSVHELHGVNSSVCSHDQ 431
TS+ S T S S ++P + ++K S L+G S +
Sbjct: 475 ERTSIRTTPSPTKCSNASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGGRSFNSGKED 534
Query: 432 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
D K + + E W ++ L + +P C+ H EPC++ KKPG GR F+
Sbjct: 535 DTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKPGINCGRSFY 591
Query: 491 VCARAEGPASNPEAN----CGYFKWA 512
+C R GP+ E CG F W+
Sbjct: 592 ICGRPLGPSGEKEKGTEWRCGTFIWS 617
Score = 123 (48.4 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F + R L+ G+++ +
Sbjct: 106 LDSEGRCMILEFPAFVLIGVYSPA--TRDETRTDFRQAFHKAMDARVRNLVAMGKQVVLT 163
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI 100
GDLNI +D K E I
Sbjct: 164 GDLNIIRNELDTAGILERLRKEEMTI 189
Score = 106 (42.4 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HP+R YTCW + A N+G+RID++LC+
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCS 262
Score = 47 (21.6 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 200 LEGSDHAPVYMCLGE 214
L GSDH PVY L +
Sbjct: 278 LLGSDHCPVYATLSD 292
Score = 39 (18.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 292 ILQGVYCSSSNQESEGEFTKTIENCRDS 319
+L GVY ++ E+ +F + D+
Sbjct: 121 VLIGVYSPATRDETRTDFRQAFHKAMDA 148
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 119 (46.9 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+L+F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 94
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFS 240
Score = 106 (42.4 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLC+ H E + + K GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCR-HGEESMLKT-SKTSANPGRKFWICKRSRGDSNNTESSCGFFQW 519
Score = 56 (24.8 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHIL 150
R + YT W NYG+RID IL
Sbjct: 305 RLKMYTVWNMLKNLRPSNYGSRIDFIL 331
Score = 53 (23.7 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 202 GSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 256
GSDH PVY L + P Q P +RY +R ++ + K++ K+
Sbjct: 351 GSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMFAKKDTNKESNK 408
Query: 257 CKF 259
K+
Sbjct: 409 QKY 411
Score = 43 (20.2 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 329 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 372
T SN + V + K S + SL SFF K N DD
Sbjct: 402 TNKESNK-QKYCVSKVMNTKKNSNIKNKSLDSFFQK-VNGEKDD 443
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 160 (61.4 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 52/149 (34%), Positives = 72/149 (48%)
Query: 10 DELLKIDSEGRC---VITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
DE+ +D E R VI+ I L ++Y P A + + R ++K+QF L +R L
Sbjct: 84 DEIY-MDGEARYIEGVISFFDKCIRLISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYL 142
Query: 66 CQGRRIFVVG-DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPE 123
I ++G D+N AP ID D F I RS L E FD FR K+P
Sbjct: 143 LNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPT 202
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCA 152
++E ++ W G Q N G RIDHIL +
Sbjct: 203 KQE-FSWWDYRGGGLQRNEGMRIDHILAS 230
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 149 (57.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 46/138 (33%), Positives = 65/138 (47%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK+QF+ + LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNGQ-KDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 76 DLNIAPAAID----RCDAGPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D+N A ID + +A F E R W +L + G F D FR + E +E Y+
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIE-RAWIDDLL-KLG--FIDTFREINGEIKEKYSW 207
Query: 131 WPSNTGAEQFNYGTRIDH 148
W A + N G RID+
Sbjct: 208 WSYRMKARERNVGWRIDY 225
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 202 GSDHAPV 208
GSDHAPV
Sbjct: 247 GSDHAPV 253
>CGD|CAL0001657 [details] [associations]
symbol:APN2 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034614 "cellular response to reactive oxygen
species" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 CGD:CAL0001657 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
KO:K10772 EMBL:AACQ01000244 EMBL:AACQ01000240 RefSeq:XP_710720.1
RefSeq:XP_710758.1 STRING:Q59LW6 GeneID:3647640 GeneID:3647674
KEGG:cal:CaO19.1836 KEGG:cal:CaO19.9394 Uniprot:Q59LW6
Length = 451
Score = 107 (42.7 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQKR 60
G D K L +DSEGRCV + + ++F VY P A+S+ T + F+L F +L +R
Sbjct: 162 GYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYDGELFRLTFIKLLLQR 220
Query: 61 WEFL--LCQGRRIFVVGDLNIAPAAIDRCD 88
L L ++I ++GD+NIA ID +
Sbjct: 221 CYNLVKLYPQKKIVIMGDINIAIDMIDHAE 250
Score = 77 (32.2 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
+D R R + YT W + T A Q N+G+RID IL
Sbjct: 322 YDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLIL 358
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 200 LEGSDHAPVY 209
L GSDH PV+
Sbjct: 377 LMGSDHCPVF 386
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 134 (52.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 48/136 (35%), Positives = 69/136 (50%)
Query: 21 CVITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNI 79
CV+ H I + ++Y P S D+ Q+KL FF L++ LL + + + GD N+
Sbjct: 113 CVVLHHNIKIRIASIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNV 172
Query: 80 APAAIDRCDAGP-D----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
AP ID D D F K+E R FRS+L G F D FR + ++ ++ W
Sbjct: 173 APYPIDVYDPEVMDGKLCFHKSE-REKFRSIL-NLG--FTDSFRVLNDYEKK-FSWWNYK 227
Query: 135 TGAEQFNYGTRIDHIL 150
GA Q N G RID++L
Sbjct: 228 AGAWQQNRGLRIDNLL 243
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 117 (46.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 17 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-KRWEFLLCQGRRIFVVG 75
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++ K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 76 DLNIA 80
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 366 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 406
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 149
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 345 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 404
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 405 NKIPVTD 411
++ + D
Sbjct: 738 DEHKLED 744
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 117 (46.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 17 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-KRWEFLLCQGRRIFVVG 75
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++ K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 76 DLNIA 80
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 366 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 406
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 149
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 345 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 404
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 405 NKIPVTD 411
++ + D
Sbjct: 738 DEHKLED 744
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 135 (52.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 46/173 (26%), Positives = 82/173 (47%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRR 70
+ D GR + ++ F L NVY P + + V ++ ++++ F K+ + L +
Sbjct: 512 EFDDVGRMITAEYEKFYLINVYVPNSGRK-LVNLEPRMRWEKLFQAYVKKLDAL----KP 566
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAY 128
+ + GD+N++ ID + + KN F R + E G F D FR +P+R+ AY
Sbjct: 567 VVICGDMNVSHMPID-LENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAY 625
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 179
T W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 626 TFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 45/142 (31%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + FIL Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFILVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F ML D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGEML--QAVPLADSFRHLYPNTAYAY 263
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARSKNVGWRLDYFL 285
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 46/148 (31%), Positives = 70/148 (47%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F L Y P A S VR+ ++ + + V + + L + + + G
Sbjct: 145 DKEGRVITAEFPDFFLVTAYVPNA-SRGLVRLDYR-KTWDVDFRAYLCGLDARKPLVLCG 202
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID R +AG F E R F + L+E+G F D FR +P++ AY
Sbjct: 203 DLNVAHQEIDLKNPKGNRKNAG--FTPEE-REGF-TQLLEAG--FTDSFRELYPDQAYAY 256
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCL 156
T W A N G R+D+ + + L
Sbjct: 257 TFWTYMMNARSKNVGWRLDYFVLSSALL 284
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 43/142 (30%), Positives = 63/142 (44%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ ++ F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEYDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTAYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 126 (49.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 40/143 (27%), Positives = 67/143 (46%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F + +Y P + R+++++++ F KR L + + +
Sbjct: 87 DQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMKWEDDFRAYIKR----LDEKKSVV 141
Query: 73 VVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
GDLN+A ID + P F+ E R F +L E G F D +R +P++ A
Sbjct: 142 FCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCIL-EEG--FIDTYRYLYPDQEGA 197
Query: 128 YTCWPSNTGAEQFNYGTRIDHIL 150
Y+ W GA N G R+D+ +
Sbjct: 198 YSWWSYRMGARAKNIGWRLDYFV 220
Score = 37 (18.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 196 MSTRLEGSDHAPV 208
+++ + GSDH PV
Sbjct: 234 INSEVMGSDHCPV 246
>UNIPROTKB|E1C286 [details] [associations]
symbol:E1C286 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831 Pfam:PF06839
PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51066
PROSITE:PS51068 SMART:SM00547 SMART:SM00898 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:TKDLICF
GeneTree:ENSGT00510000048146 EMBL:AADN02008928 IPI:IPI00592615
Ensembl:ENSGALT00000017443 ArrayExpress:E1C286 Uniprot:E1C286
Length = 600
Score = 110 (43.8 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 457 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 515
Q + S P C H + CV ++V K GP GR FFVC P E CG+F+WA +K
Sbjct: 542 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVC-----PLQK-EKQCGFFQWAENK 593
Score = 64 (27.6 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 360 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 419
+F H +SNV H S+ + VT + S + P S H K T + SVH+
Sbjct: 422 NFSHNQSNVYH----SVISIDKYCSTDVTSAASSSCQEPLSFKHIKKKQKTHHVPSVHQY 477
Query: 420 HG 421
+G
Sbjct: 478 NG 479
Score = 42 (19.8 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 266 ESNSTGDTEDCSENVDRSLN--NY-CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
E +S+ TE+ ++ D ++N Y C+ + + + G T + + + A +
Sbjct: 344 EVSSSLKTENVEDSADFNINLIKYPCNEFRKPSTEIKINRKAAFGNTTLVLTDLGNKAVL 403
Query: 323 ASHSTITQGSSNHISP 338
++ G S++++P
Sbjct: 404 KGDIQVSDGCSDYVAP 419
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASHKPLVL 206
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAY 263
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARSKNVGWRLDYFL 285
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAY 263
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARSKNVGWRLDYFL 285
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDTFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 121 (47.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 40/160 (25%), Positives = 80/160 (50%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+ GR +I + F Y P + ++ V ++ + ++ +L ++ + + + + +
Sbjct: 121 EFDTAGRLIIAEFSKFYFIGAYVPNSGAK-LVNLEKRGRWEKLLTEKMKEM-DEKKPVIY 178
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNE---F----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID P+ +N+ F R WF ML E G F D FR+ HP+ ++
Sbjct: 179 GGDLNVAHNEIDL--KNPESNRNKTAGFTDQERGWFSEML-ELG--FTDTFRAMHPDEKK 233
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQS 164
Y+ W + Q + G R+D+ + + +++ + D+ S
Sbjct: 234 -YSFWSYLANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMS 272
Score = 43 (20.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 202 GSDHAPVYM 210
GSDHAPV M
Sbjct: 276 GSDHAPVVM 284
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 129 (50.5 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 38/142 (26%), Positives = 66/142 (46%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ K D+EGR + ++ F + N Y P A + R+ ++++ + V + + L + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W G N G R+D+ +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFV 327
Score = 37 (18.1 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 198 TRLEGSDHAPV 208
T + GSDH P+
Sbjct: 344 TSVMGSDHCPI 354
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
>RGD|1310562 [details] [associations]
symbol:Neil3 "nei endonuclease VIII-like 3 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006284 "base-excision
repair" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISO] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 RGD:1310562
GO:GO:0005634 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946
OrthoDB:EOG48GW30 GeneTree:ENSGT00510000048146 IPI:IPI00358506
Ensembl:ENSRNOT00000015623 Uniprot:D3ZKJ8
Length = 607
Score = 127 (49.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 502 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 549
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 347 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 406
K + +LG+ S ++F + + I + N N ++ T Q+ +S ++
Sbjct: 261 KIRVCRLGENSRMTYFCPHCQKENPQHVQICQQTANKNAEISWTPKGQDCFTDSVARKSE 320
Query: 407 IPVTDYSCSVHEL-HGVNSSVCSHDQDEKKGKRFLDKERNNVA 448
+SC V L + +++ C + L E N++A
Sbjct: 321 ---EQWSCMVCTLINKPSATACDACLTTRPVDSVLKNEENSIA 360
>UNIPROTKB|F1N383 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0000405 "bubble DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 IPI:IPI00706576
UniGene:Bt.37835 OMA:TKDLICF GeneTree:ENSGT00510000048146
EMBL:DAAA02060028 Ensembl:ENSBTAT00000007661 Uniprot:F1N383
Length = 606
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 339 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 390
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 391 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 450
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 451 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 509
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 510 KWA 512
+WA
Sbjct: 546 EWA 548
>UNIPROTKB|Q3MHN7 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0000405
"bubble DNA binding" evidence=ISS] [GO:0006284 "base-excision
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 eggNOG:COG0266 SUPFAM:SSF81624
SUPFAM:SSF46946 EMBL:BC105168 IPI:IPI00706576 RefSeq:NP_001029662.1
UniGene:Bt.37835 ProteinModelPortal:Q3MHN7 STRING:Q3MHN7
PRIDE:Q3MHN7 GeneID:515343 KEGG:bta:515343 CTD:55247
HOGENOM:HOG000113754 HOVERGEN:HBG052594 InParanoid:Q3MHN7 KO:K10569
OrthoDB:EOG48GW30 NextBio:20871781 Uniprot:Q3MHN7
Length = 606
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 339 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 390
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 391 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 450
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 451 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 509
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 510 KWA 512
+WA
Sbjct: 546 EWA 548
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 129 (50.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR V + F L N Y P + + R+ ++++ + L + + + + G
Sbjct: 370 DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTG 428
Query: 76 DLNIAPAAIDRCD-AGPDFAKN---EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN A ID + AG + E R F + L++ G F D FR +HP YT W
Sbjct: 429 DLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQHPGV-VGYTYW 485
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G + N G R+D+ L + HD
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQSIAANVHD 515
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 200 LEGSDHAPVYMCL 212
+ GSDH P+ + L
Sbjct: 522 INGSDHCPIGLIL 534
>ZFIN|ZDB-GENE-041114-18 [details] [associations]
symbol:neil3 "nei endonuclease VIII-like 3 (E.
coli)" species:7955 "Danio rerio" [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF00641 Pfam:PF01149 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 SMART:SM00898
ZFIN:ZDB-GENE-041114-18 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0005622 GO:GO:0003906 GO:GO:0006289 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0016799 GeneTree:ENSGT00510000048146
EMBL:CR853287 IPI:IPI00837209 Ensembl:ENSDART00000123343
ArrayExpress:F1Q570 Bgee:F1Q570 Uniprot:F1Q570
Length = 577
Score = 123 (48.4 bits), Expect = 0.00030, P = 0.00030
Identities = 44/149 (29%), Positives = 63/149 (42%)
Query: 379 TSLNVN-NSVTDTSLSQEEVPESHH----HSN---KIP---VTDYSCSVHELHGVNSSVC 427
TSL+ +S + ++SQ PE+ H N K P V+ +E + S
Sbjct: 378 TSLSAKPDSPSSPAISQAHTPETMRGLSTHGNWQRKSPSNGVSGMQFKGNEPYK-RESPT 436
Query: 428 SHDQDEKKGKRFLDK-ERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGP 483
H Q K+ K N+ + R QQ + S+P CK H PC RVV K G
Sbjct: 437 DHSQPNKRMKTTNGTFSGGNIKHISSRGTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGE 496
Query: 484 TFGRRFFVCARAEGPASNPEANCGYFKWA 512
GR+F+ C+ E C +F+WA
Sbjct: 497 NKGRQFYTCSLPR------ETQCNFFEWA 519
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 43/142 (30%), Positives = 61/142 (42%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ K FL L + + +
Sbjct: 151 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDKAFCK---FLKDLASRKPLVL 206
Query: 74 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTPYAY 263
Query: 129 TCWPSNTGAEQFNYGTRIDHIL 150
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARAKNVGWRLDYFL 285
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 113 (44.8 bits), Expect = 0.00098, P = 0.00098
Identities = 36/137 (26%), Positives = 60/137 (43%)
Query: 27 GHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID 85
G+ + N Y P+ +S D ++ K QF+ LQ E L + + ++GD+NI+P +D
Sbjct: 101 GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160
Query: 86 RCDAGPDFAKNEFRIWFRSMLVES--------GGSFFDVFRSKHPERREAYTCWPSNTGA 137
G + K R S L E D FR +P+ + ++ + +
Sbjct: 161 -IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKG 219
Query: 138 EQFNYGTRIDHILCAGP 154
N G RID +L + P
Sbjct: 220 FDDNRGLRIDLLLASQP 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 519 519 0.00089 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 623 (66 KB)
Total size of DFA: 346 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 52.31u 0.08s 52.39t Elapsed: 00:00:34
Total cpu time: 52.32u 0.08s 52.40t Elapsed: 00:00:36
Start: Mon May 20 14:54:02 2013 End: Mon May 20 14:54:38 2013