BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010035
(519 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis]
gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis]
Length = 586
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/518 (60%), Positives = 383/518 (73%), Gaps = 21/518 (4%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+GLE+F KDELLKIDSEGRC+ITDHGHF+LFN+YGPRA+S+DT RI FKL F+++LQKRW
Sbjct: 90 QGLEEFDKDELLKIDSEGRCIITDHGHFVLFNLYGPRAESDDTERIHFKLLFYNILQKRW 149
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL QGRRIFVVGDLNIAP A+DRCDA PDF KNEFRIWFRSMLV+SGG FFDVFRSKH
Sbjct: 150 ESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFEKNEFRIWFRSMLVKSGGPFFDVFRSKH 209
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ+HD Q H+FV+CH+ +CDILIDY
Sbjct: 210 PDRREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQEHDFQVHDFVSCHMKDCDILIDY 269
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWKPG+ RWKGG T+LEGSDHAPVY L E+P+IPQH TPSL++RYLP+I G QQTL
Sbjct: 270 KRWKPGDTMRWKGGWGTKLEGSDHAPVYTSLVEIPDIPQHGTPSLSARYLPMIHGFQQTL 329
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
VSVLMKR+ + Q S G++ ++ C+E++ + L N C+ S +
Sbjct: 330 VSVLMKRQASTQVSSSFSDGNVTIKA--------CNESI-KGLYNNCNISDHSASDSSCA 380
Query: 302 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 361
++S+G + ++C+D ++ + S HI+ H + +KKA+KSQ QLSL+SF
Sbjct: 381 TKDSDGAILRMEKHCKDFSDQTCSDSTIMLQSRHINSMHTEGTKKKARKSQCSQLSLRSF 440
Query: 362 FHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 421
F + N T N+ D S SQE V S+ ++ D + G
Sbjct: 441 FQRTPN-----------TRSGAENTALDISHSQENVSNSNSPPSETASQDDHNNTPGHCG 489
Query: 422 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 481
+NSS + DQDE +KE+NNVALLEW+RIQQLM+ SIPLCKGHKEPCV+R+VKKP
Sbjct: 490 LNSSSGTQDQDEINNGP-SEKEKNNVALLEWQRIQQLMQNSIPLCKGHKEPCVSRIVKKP 548
Query: 482 GPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
GPT G RF+VCARAEGPASNPEANCGYFKWA SKS+QK
Sbjct: 549 GPTCGHRFYVCARAEGPASNPEANCGYFKWASSKSRQK 586
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
2 [Vitis vinifera]
Length = 596
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/523 (58%), Positives = 380/523 (72%), Gaps = 24/523 (4%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQKRW
Sbjct: 93 EGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKRW 152
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+KH
Sbjct: 153 ETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAKH 212
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL +
Sbjct: 213 PDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQF 272
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT+
Sbjct: 273 KRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQTI 332
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S + G + SSS
Sbjct: 333 ASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPSGDFLSSS 389
Query: 302 NQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQL 356
N +SEG + +I + DS+N + + S I Q S +P V +KKA++SQ QL
Sbjct: 390 NLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKARQSQCSQL 444
Query: 357 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 416
SLKSFF K SNV V+N+ D SL Q + +S+ + NK + D
Sbjct: 445 SLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSMGDDESKS 493
Query: 417 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 476
++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R
Sbjct: 494 SKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSR 553
Query: 477 VVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+ +
Sbjct: 554 LAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR 596
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
1 [Vitis vinifera]
Length = 625
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/523 (58%), Positives = 380/523 (72%), Gaps = 24/523 (4%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQKRW
Sbjct: 122 EGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKRW 181
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+KH
Sbjct: 182 ETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAKH 241
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL +
Sbjct: 242 PDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQF 301
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT+
Sbjct: 302 KRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQTI 361
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S + G + SSS
Sbjct: 362 ASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPSGDFLSSS 418
Query: 302 NQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQL 356
N +SEG + +I + DS+N + + S I Q S +P V +KKA++SQ QL
Sbjct: 419 NLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKARQSQCSQL 473
Query: 357 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 416
SLKSFF K SNV V+N+ D SL Q + +S+ + NK + D
Sbjct: 474 SLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSMGDDESKS 522
Query: 417 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 476
++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R
Sbjct: 523 SKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSR 582
Query: 477 VVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+ +
Sbjct: 583 LAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR 625
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa]
gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 300/520 (57%), Positives = 366/520 (70%), Gaps = 19/520 (3%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE+F KDEL+K+DSEGRCV+TDH HF+LFN+YGPRA +DT RI+FK++FF +LQKRW
Sbjct: 115 EGLEEFEKDELVKVDSEGRCVVTDHNHFVLFNLYGPRAAHDDTERIEFKMKFFKILQKRW 174
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL +GRR+FVVGDLNIAP A+DRCDA DF KNEFR WFRS+L+ SGG F DVFR+KH
Sbjct: 175 ENLLHEGRRVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSILMMSGGLFVDVFRAKH 234
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RREAYTCW S+TGAE FN+G+RIDHILCAGPCLHQ+HDLQ HNF++CHV ECDIL Y
Sbjct: 235 PDRREAYTCWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKECDILTQY 294
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWKPG++ RWKGG +LEGSDHAPVYM L E+ +IP+HSTP L++RYLP+I GVQQTL
Sbjct: 295 KRWKPGDSTRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHSTPPLSARYLPMIHGVQQTL 354
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
V++LMKR+ A Q +S S + S+ + CSE++ RS N S CS +
Sbjct: 355 VTLLMKRQAATQIQS---SRISSSFSDGDATIKACSESIKRSFNECSVSRPSTSPSCSLT 411
Query: 302 NQESEGEFTKTIENCRD--SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 359
+E + +K EN +D N T S H + +KK +KS+ QLSL+
Sbjct: 412 -EEFDSAISKRDENSKDLTDENQGCPDTTMILQSQHTKFVPAEGTKKKPRKSRCSQLSLR 470
Query: 360 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 419
SFF K N+ S NS T+ S SQ E S + + D S S
Sbjct: 471 SFFQKSPNL-----------STGAENSSTNASPSQAEPNTSSYSNGSHAPGDKSSSPRHC 519
Query: 420 HGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVK 479
+N S S QD K L++E+NNVALLEW+RIQQLM SIP+CKGHKEPCVAR+VK
Sbjct: 520 Q-LNPSAGSQYQD-KGNDGSLEREKNNVALLEWQRIQQLMRNSIPVCKGHKEPCVARIVK 577
Query: 480 KPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
KPG TFG RFFVC+RAEGP SNPEANCGYFKWA SKS++K
Sbjct: 578 KPGRTFGHRFFVCSRAEGPVSNPEANCGYFKWASSKSQRK 617
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera]
Length = 632
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 290/508 (57%), Positives = 360/508 (70%), Gaps = 31/508 (6%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHF-------ILFNVYGPRADSEDTVRIQFKLQFF 54
EGLE+F+KDELLK+DSEGRC+ITDHGHF +LFN+YGPRADSEDT RIQFK FF
Sbjct: 122 EGLEEFAKDELLKVDSEGRCIITDHGHFADYGNWPVLFNIYGPRADSEDTERIQFKHTFF 181
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 114
+LQKRWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FF
Sbjct: 182 QILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFF 241
Query: 115 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE 174
DVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV E
Sbjct: 242 DVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKE 301
Query: 175 CDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII 234
CDIL +KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P +
Sbjct: 302 CDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTV 361
Query: 235 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQ 294
G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S +
Sbjct: 362 HGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPS 418
Query: 295 GVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAK 349
G + SSSN +SEG + +I + DS+N + + S I Q S +P V +KKA+
Sbjct: 419 GDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKAR 473
Query: 350 KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV 409
+SQ QLSLKSFF K SNV V+N+ D SL Q + +S+ + NK +
Sbjct: 474 QSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSM 522
Query: 410 TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 469
D ++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKGH
Sbjct: 523 GDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGH 582
Query: 470 KEPCVARVVKKPGPTFGRRFFVCARAEG 497
EPCV+R+ KKPGP GRRF+VCARAE
Sbjct: 583 GEPCVSRLAKKPGPNHGRRFYVCARAEA 610
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
Length = 611
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/519 (55%), Positives = 363/519 (69%), Gaps = 27/519 (5%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE+FSK+ELLK+DSEGRC++TDHGHF+LFN+YGPRADS+D+ R+ FKL F++VLQKRW
Sbjct: 119 EGLEEFSKEELLKLDSEGRCIVTDHGHFVLFNIYGPRADSDDSDRVLFKLNFYNVLQKRW 178
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAP ++DRCDAGPDF NEFR W RS++V GG F D+FR+KH
Sbjct: 179 EHLLHMGKRVFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLMVACGGRFIDIFRAKH 238
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RR+AYTCWP +TGAE FNYGTRIDHILCAGPCLH ++L HN V CHV ECDIL Y
Sbjct: 239 PDRRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHHDNNLPGHNIVACHVMECDILSQY 298
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWK GN+ RWK + +LEGSDHAPV L E+P+ PQHSTPSL++RY P I G+QQTL
Sbjct: 299 KRWKDGNSYRWKEERTVKLEGSDHAPVCASLLEIPDTPQHSTPSLSARYNPKIHGLQQTL 358
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
VS+L+KR+ A+ CK S S+S G+ +CS+ + S +N SG L CS +
Sbjct: 359 VSMLLKRQAAEDSAPCKKS-----NSSSLGNLGNCSQGFNGSFDNGDQSGDLPSESCSLT 413
Query: 302 NQESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS 360
N E+E +T E S A A+ T+T H + RK+ ++ Q+SLK+
Sbjct: 414 NLETEDSLLETGECSGGSYAKEAACKTLTTHEPLHAKALPENPTRKRVRR--CSQMSLKA 471
Query: 361 FFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELH 420
FF K S VS+D ++S D+S++ ++ S+ E+P S+ T S S +L
Sbjct: 472 FFQKNSVVSNDADSSNADSSISKGDTSESNSI---EIPRSN--------TQISDSGRQLE 520
Query: 421 GVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKK 480
Q + + +KE++ VA+LEWRRIQQ+M+ SIPLCKGHKE CVARVVKK
Sbjct: 521 AY--------QGQSQINATPEKEKSGVAMLEWRRIQQVMQNSIPLCKGHKETCVARVVKK 572
Query: 481 PGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
GP GRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 573 QGPNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK 611
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Glycine max]
Length = 622
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 289/526 (54%), Positives = 362/526 (68%), Gaps = 28/526 (5%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
ME LE+FSKDELL +DSEGRC+ITDH HF+LFN+YGPRA +DT RIQFK +F+ +LQKR
Sbjct: 118 MEDLEEFSKDELLSLDSEGRCIITDHTHFVLFNLYGPRAGGDDTERIQFKQKFYRILQKR 177
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
WE LL QGRRIFVVGDLNIAP AIDRCDAGPDF NEFR WF+SML+E+GG F DVFR+K
Sbjct: 178 WESLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSMLIENGGRFSDVFRAK 237
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
HP+RREAYTCW NTGAE FN+G+RIDHIL AG CLH+ DLQ H+F+ CHV ECDIL
Sbjct: 238 HPDRREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCHSFIRCHVKECDILTQ 297
Query: 181 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 240
YKR KP + RWKGG S +LEGSDHAPV M L E+P++ HSTPSL++RY+P++ G+QQT
Sbjct: 298 YKRCKPESTLRWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHSTPSLSARYVPMVHGIQQT 357
Query: 241 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 300
LVSVLMKR+V++ KSC+ + E + T + E V+R+ G S
Sbjct: 358 LVSVLMKRQVSELMKSCE----MAQEDIAMDGTCEREEPVNRA-----------GSSTRS 402
Query: 301 SNQ-----ESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF-HVDRARKKAKKSQLG 354
N+ + E + ++ + S + S GS N S +R+ KKA+ Q
Sbjct: 403 PNECHFPPSQDFEVSSILKPNKLSGGSSQESVSKSGSENKKSTTRQCNRSNKKARNGQWS 462
Query: 355 QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS 413
QLSL+SFF K +N+ D +SI + VN+S TD S +Q E + +IP
Sbjct: 463 QLSLRSFFQKSTNL--DKGSSIKEV---VNDSCTDYSNNNQAEPSQPSPRLQEIPTVCAH 517
Query: 414 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 473
+ + +++ C D G +E++NVA LEW+RI+QLM+ SIP+CKGHKEPC
Sbjct: 518 NGSPKQYELDTDTCDPDLAGPNGSS-TKEEKSNVASLEWQRIKQLMQNSIPICKGHKEPC 576
Query: 474 VARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
+ARVVKK GP FGRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 577 IARVVKKQGPNFGRRFYVCARAEGPASNPEANCGYFKWASSKSRNK 622
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 613
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 282/522 (54%), Positives = 361/522 (69%), Gaps = 32/522 (6%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
E LEDFSKDELL +DSEGRCV+TDHGHF+LFN+YGPRA +DT RIQFK F+ +LQKR
Sbjct: 120 EDLEDFSKDELLNVDSEGRCVVTDHGHFVLFNIYGPRAGGDDTERIQFKKTFYRILQKRL 179
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL QGRRIFVVGDLNIAP A+DRCDAGPDF KNEFR WFRSML+E+GG F DVFR+KH
Sbjct: 180 ESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSMLIENGGRFSDVFRAKH 239
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P++ +AYTCW ++GAE FNYG+RIDHILCAG CLH+ DLQSH+F+ CHV EC+IL Y
Sbjct: 240 PDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSHSFIGCHVKECEILTQY 299
Query: 182 KRWKPG---NAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQ 238
KR+KP ++ RWKGG S +LEGSDHAPV L +PE+ HSTPSL+SRY+P++ GVQ
Sbjct: 300 KRFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHSTPSLSSRYVPMVHGVQ 359
Query: 239 QTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYC 298
Q+LVS+LMKR V+ +SCK + + + E E VD+ ++ C+ +
Sbjct: 360 QSLVSLLMKRRVS---ESCKMAN---GDILTVSTCERIEEPVDKIGSSTCECDLF----- 408
Query: 299 SSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH-VDRARKKAKKSQLGQLS 357
NQ+SEG K E SA + S GS S + ++KKA+ SQ QLS
Sbjct: 409 --PNQDSEGSILKPNEL---SAGSSQESVSKSGSVYEKSITQKCNESKKKARNSQSSQLS 463
Query: 358 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH 417
++SFF K +++ +N + D+ ++ +N+ + S ++ E+ + D+S +
Sbjct: 464 IRSFFQKSTSL----DNGVKDSCISYSNNEAEPSQPNSQLLET------CTIIDHSSNPG 513
Query: 418 ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARV 477
+ +N+ VC D E +E++NVA EW+RIQ+LM+ SIPLCKGHKEPC+ARV
Sbjct: 514 Q-DEINADVCGQDLAEINNSS-RKEEKSNVASQEWQRIQKLMQNSIPLCKGHKEPCIARV 571
Query: 478 VKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
VKK G FGRRF+ CARAEGPASNPEANCGYFKWA SKSK K
Sbjct: 572 VKKQGANFGRRFYTCARAEGPASNPEANCGYFKWATSKSKNK 613
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/489 (52%), Positives = 332/489 (67%), Gaps = 40/489 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ +L++RWE LL QGR++FV
Sbjct: 132 RIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYDILERRWECLLRQGRKVFV 191
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
VGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S
Sbjct: 192 VGDLNIAPFAVDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSS 251
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN-APRW 192
+TGAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CH+NEC+IL +YKR+K N A RW
Sbjct: 252 STGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHINECEILTEYKRFKNENMATRW 311
Query: 193 KGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAK 252
KGG+ T+L+GSDH PV+ ++P+IP+HSTP LASRYLP+I G QQTLVSV MK+ +
Sbjct: 312 KGGLGTKLKGSDHVPVFTSFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFMKKRANE 371
Query: 253 QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT-- 310
+ K+ + S S ++SN++ D S L N GI CS N ES FT
Sbjct: 372 EAKAIEVSCSSSSQSNASSSCGDISTG---PLRNCVSMGISLEKSCSFEN-ESTCAFTEA 427
Query: 311 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSH 370
+T+ + N ++ G + +IS D RKKA+K Q QLSLKSFF S V +
Sbjct: 428 ETVASTGSIDNTCDGIRVSSGRAVNISR---DGDRKKARKIQSSQLSLKSFFTTNSKVKN 484
Query: 371 DDNNSITDTSLNVN---NSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 427
++S + S + + S+T+ ++S +E E P T
Sbjct: 485 GRDSSSSYVSSSPSSQAESITEPNVSSKEDGE--------PTTS---------------- 520
Query: 428 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 487
+ +QD+ K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGR
Sbjct: 521 TQEQDQSSSSA---KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGR 577
Query: 488 RFFVCARAE 496
RF+VC+RAE
Sbjct: 578 RFYVCSRAE 586
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana]
gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana]
Length = 610
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/483 (52%), Positives = 318/483 (65%), Gaps = 30/483 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RWE LL QGRR+FVV
Sbjct: 133 IDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWECLLRQGRRVFVV 192
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
GDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S+
Sbjct: 193 GDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSS 252
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWK 193
+GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWK
Sbjct: 253 SGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWK 312
Query: 194 GGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 253
GG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++
Sbjct: 313 GGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEE 372
Query: 254 GKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTI 313
K+ + S S +SN++ D S L N GI CS N+ + G
Sbjct: 373 AKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEA 427
Query: 314 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 373
E + ++ + S + SS D RKKA+K Q QLSLKSFF S V
Sbjct: 428 ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV----- 482
Query: 374 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 433
N++ D+S + +S + + P + P T S E SS
Sbjct: 483 NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA------- 531
Query: 434 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 493
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+
Sbjct: 532 --------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCS 583
Query: 494 RAE 496
RAE
Sbjct: 584 RAE 586
>gi|242049990|ref|XP_002462739.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
gi|241926116|gb|EER99260.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
Length = 618
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/528 (43%), Positives = 319/528 (60%), Gaps = 46/528 (8%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP + +D R++FKL F+ +LQKRW
Sbjct: 125 EGLGEITREDLLRVDNEGRCIITDHGHFVLFNIYGPAVEEDDKERVRFKLLFYKILQKRW 184
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAPA+IDRCDA P F K FR+W RSML E GG FFD FRSKH
Sbjct: 185 EHLLALGKRVFVVGDLNIAPASIDRCDAPPGFEKQMFRVWMRSMLREHGGPFFDAFRSKH 244
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE++NYG+RIDHIL +G CLH ++ HN CHV EC+I+ +
Sbjct: 245 PERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHHCDSVEYHNIFCCHVEECEIMNHF 304
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KR N +WKGG S +LEGSDH PVY+ L E+PE+P H+ P A+RYLP +RG QQ++
Sbjct: 305 KRGNSENLSKWKGGRSNKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEVRGRQQSI 364
Query: 242 VSVLMKREVAKQGKSCKF--SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 299
VS L K ++ + + SG + S CS+N++ G+ G+
Sbjct: 365 VSFLDKGKIYELQNAANLIQSGDIVGHSY-------CSDNMEN--RTIAKEGLTTGI--- 412
Query: 300 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR--ARKKAKKSQLGQLS 357
+ G + D + + I S+ + + +KK K + Q +
Sbjct: 413 -TQFAKGGNLPSLMRKGTDLDQLTNECIIGISHSSQRASLSSTKFVPKKKIKSNLSSQPT 471
Query: 358 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC--- 414
+KSFF + S VN S + ++L + K+ +T+ +C
Sbjct: 472 IKSFFQRPG-------------SKTVNASTSTSTLVTP--------AEKVDLTNQTCVPN 510
Query: 415 --SVHELHGVNSSVCSHDQDEKKGKR-FLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 471
S+HE +S + DQD L +++N A LEW+RIQQ M+ ++P CKGH+E
Sbjct: 511 DDSLHENMQCTTSA-AEDQDNTNASSCSLSADKSNGAALEWQRIQQKMKMTLPRCKGHRE 569
Query: 472 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
PC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA KSK+K
Sbjct: 570 PCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWAPGKSKEK 616
>gi|297735011|emb|CBI17373.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 228/269 (84%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQKRW
Sbjct: 122 EGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKRW 181
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+KH
Sbjct: 182 ETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAKH 241
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL +
Sbjct: 242 PDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQF 301
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT+
Sbjct: 302 KRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQTI 361
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNST 270
SVLMKR+ A+Q K+ + S S E+ +T
Sbjct: 362 ASVLMKRQKAEQVKTFEVSSSFSDENITT 390
>gi|414886484|tpg|DAA62498.1| TPA: hypothetical protein ZEAMMB73_437105 [Zea mays]
Length = 621
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/523 (42%), Positives = 314/523 (60%), Gaps = 52/523 (9%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP D +D R++FKL F+ +LQKRW
Sbjct: 125 EGLGELTREDLLRVDNEGRCIITDHGHFVLFNIYGPAVDGDDKERVRFKLLFYKILQKRW 184
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAPA+IDRCDA P F K FR W RSML E GG FFD FRSKH
Sbjct: 185 ERLLALGKRVFVVGDLNIAPASIDRCDAAPGFEKQMFREWLRSMLREHGGPFFDAFRSKH 244
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE++NYG+RIDHIL +G CLH+ ++ H+ CHV EC+I+ +
Sbjct: 245 PERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHRCDSVEDHSIFCCHVEECEIMNHF 304
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
KR N +WKGG S++LEGSDH PVY+ L E+PE+P H+ P A+RYLP IRG QQ++
Sbjct: 305 KRGNSENLSKWKGGRSSKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEIRGRQQSI 364
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
VS L K ++ + + + ++ D L++YC G+ +
Sbjct: 365 VSFLDKGKIYE-----------------LQNAANLIQSEDTVLDSYCSDGLENTILAKKG 407
Query: 302 NQESEGEFTK-----------TIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 350
EF K T N + + S ++Q S + F +KK K+
Sbjct: 408 LATGITEFAKGGNLPSLMCKGTDLNQWINEGLMGISHVSQKKSLSSTKF---VPQKKIKR 464
Query: 351 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ-EEVPESHHHSNKIPV 409
+ Q ++KSFF + + + + + S T + +S + +PE+ +
Sbjct: 465 NLSSQPTIKSFFQRPGSKTVNASTSTLVTPAETLDLTNQACVSNGDTLPEN------MQC 518
Query: 410 TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 469
T + V + ++S CS L +++N A LEW+RIQ+ M+ ++P CKGH
Sbjct: 519 TTSAAKVQD--NTDASSCS-----------LSTDKSNAAALEWQRIQKKMKMTLPRCKGH 565
Query: 470 KEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA
Sbjct: 566 SEPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWA 607
>gi|357159663|ref|XP_003578519.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Brachypodium distachyon]
Length = 624
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/522 (44%), Positives = 318/522 (60%), Gaps = 32/522 (6%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL +++ELL++D+EGRC+ITDHGHF+LFN+YGP +D R++FKL F+ +LQKRW
Sbjct: 125 EGLGVITREELLRVDNEGRCIITDHGHFVLFNIYGPAVGEDDEERVRFKLLFYKILQKRW 184
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
+FLL G+R+FVVGD+NIAP +IDRCDA P F K FR W RSML E+GG FFD FRSKH
Sbjct: 185 DFLLALGKRVFVVGDMNIAPGSIDRCDAPPGFEKQMFREWLRSMLRENGGPFFDAFRSKH 244
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE++NYG+RIDHIL +G C H + ++ H+ CHV +C+I+ +
Sbjct: 245 PERVGAYTCFNQKVGAEEYNYGSRIDHILISGACFHHCNSMEDHSVFHCHVEDCEIMNHF 304
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
+R N +WKGG S +LEGSDH PVY+ L +PE+P H+TPS A+RYLP IRG QQT+
Sbjct: 305 RRGDSENISKWKGGRSIKLEGSDHIPVYIILNGIPEVPVHNTPSTAARYLPEIRGRQQTI 364
Query: 242 VSVLMKRE--VAKQGKSCKFSGSLPAESNSTGDTEDCS---ENVDRSLNNYCDSGILQGV 296
VS L+K + + S ES+ + D E+ S E + ++ + G L +
Sbjct: 365 VSFLLKGKNYELEDATGSNMSKDRIDESSCSDDLENKSISKEELPTAITEFSKGGNLPSL 424
Query: 297 YCSSSNQESEGEFTKTIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 355
C N + + + ++ +A S S N + + KK K + Q
Sbjct: 425 TCKRRNLDHWVNEGSSGNSNNNNPTLLAPQSQKASFSGNKFT------SNKKNKHNLSSQ 478
Query: 356 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 415
++KSFF + + D ++NN V+ S + VP+ + P D S
Sbjct: 479 PTIKSFFRQPETKTGD---------ADINNPVS----SVDTVPDMDEL--RSPKDD---S 520
Query: 416 VHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVA 475
+ E H ++ DQD ++ NVA LEW+RIQ M+T++PLCKGH+EPC+
Sbjct: 521 LLE-HIHCTAAADEDQDNSDIPCSQSTDKCNVATLEWQRIQLRMKTTLPLCKGHREPCIP 579
Query: 476 RVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 517
R VKK G GR F+VCARA+GP+SNPEANCG+F+WA KSK
Sbjct: 580 RSVKK-GSNIGRLFYVCARAQGPSSNPEANCGHFQWASVKSK 620
>gi|218202527|gb|EEC84954.1| hypothetical protein OsI_32178 [Oryza sativa Indica Group]
Length = 619
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/527 (44%), Positives = 305/527 (57%), Gaps = 43/527 (8%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +LQ+RW
Sbjct: 125 EGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKILQRRW 184
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD FRSKH
Sbjct: 185 EHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAFRSKH 244
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I+ +
Sbjct: 245 PERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEIMDHF 304
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
+R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG QQ++
Sbjct: 305 RRGNSKNMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGRQQSI 364
Query: 242 VSVLMK---------REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 292
VS L K + + +SC G ES + E ++ S N S I
Sbjct: 365 VSFLRKGMIYEHKDAMSMDRADESCCGGG---LESKAIYKEEPPTDIAKFSKGNDLHSVI 421
Query: 293 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 352
+ + N+ S G +S N + TQ S + KK K +
Sbjct: 422 KRKIRDQLLNEGSSG----------NSHNSTAALLATQSRKASFSCSKT-VSNKKNKHNL 470
Query: 353 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 412
Q ++KSFF + + D + NS+ + + E H N
Sbjct: 471 SSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELHDPKNDCLPESI 520
Query: 413 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEP 472
C ++ + DQ L ++ N A LEW+RIQQ M+ ++PLCKGH EP
Sbjct: 521 QC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKMTLPLCKGHHEP 571
Query: 473 CVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
C+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 572 CIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|115480379|ref|NP_001063783.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|50726587|dbj|BAD34221.1| AP endonuclease 2-like [Oryza sativa Japonica Group]
gi|113632016|dbj|BAF25697.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|215736944|dbj|BAG95873.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 619
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/534 (42%), Positives = 304/534 (56%), Gaps = 57/534 (10%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +LQ+RW
Sbjct: 125 EGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKILQRRW 184
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD FRSKH
Sbjct: 185 EHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAFRSKH 244
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I+ +
Sbjct: 245 PERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEIMDHF 304
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
+R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG QQ++
Sbjct: 305 RRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGRQQSI 364
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
VS L K + + + ++DR+ + C G+ +
Sbjct: 365 VSFLRKGMIYEHKDAM---------------------SMDRADESCCGGGLERKAIYKEE 403
Query: 302 NQESEGEFTK--------------TIENCRDSANVASHSTITQGSSNHISPFHVDRA--R 345
+F+K + N S N + + + + + F +A
Sbjct: 404 PPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSN 463
Query: 346 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 405
KK K + Q ++KSFF + + D + NS+ + + E H N
Sbjct: 464 KKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELHDPKN 513
Query: 406 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 465
C ++ + DQ L ++ N A LEW+RIQQ M+ ++PL
Sbjct: 514 DCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKMTLPL 564
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
CKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 565 CKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|222641992|gb|EEE70124.1| hypothetical protein OsJ_30144 [Oryza sativa Japonica Group]
Length = 568
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/534 (42%), Positives = 304/534 (56%), Gaps = 57/534 (10%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +LQ+RW
Sbjct: 74 EGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKILQRRW 133
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
E LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD FRSKH
Sbjct: 134 EHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAFRSKH 193
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
PER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I+ +
Sbjct: 194 PERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEIMDHF 253
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
+R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG QQ++
Sbjct: 254 RRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGRQQSI 313
Query: 242 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 301
VS L K + + + ++DR+ + C G+ +
Sbjct: 314 VSFLRKGMIYEHKDAM---------------------SMDRADESCCGGGLERKAIYKEE 352
Query: 302 NQESEGEFTK--------------TIENCRDSANVASHSTITQGSSNHISPFHVDRA--R 345
+F+K + N S N + + + + + F +A
Sbjct: 353 PPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSN 412
Query: 346 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 405
KK K + Q ++KSFF + + D + NS+ + + E H N
Sbjct: 413 KKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELHDPKN 462
Query: 406 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 465
C ++ + DQ L ++ N A LEW+RIQQ M+ ++PL
Sbjct: 463 DCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKMTLPL 513
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
CKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 514 CKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 566
>gi|3036809|emb|CAA18499.1| putative protein [Arabidopsis thaliana]
gi|7270557|emb|CAB81514.1| putative protein [Arabidopsis thaliana]
Length = 641
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/483 (47%), Positives = 294/483 (60%), Gaps = 57/483 (11%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RWE LL QGRR+FVV
Sbjct: 133 IDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWECLLRQGRRVFVV 192
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
GDLNIAP A+DRC+AGPDF KNE ++A+TCW S+
Sbjct: 193 GDLNIAPFAMDRCEAGPDFEKNE---------------------------KDAFTCWSSS 225
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWK 193
+GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWK
Sbjct: 226 SGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWK 285
Query: 194 GGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 253
GG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++
Sbjct: 286 GGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEE 345
Query: 254 GKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTI 313
K+ + S S +SN++ D S L N GI CS N+ + G
Sbjct: 346 AKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEA 400
Query: 314 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 373
E + ++ + S + SS D RKKA+K Q QLSLKSFF S V
Sbjct: 401 ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV----- 455
Query: 374 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 433
N++ D+S + +S + + P + P T S E SS
Sbjct: 456 NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA------- 504
Query: 434 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 493
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+
Sbjct: 505 --------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCS 556
Query: 494 RAE 496
RAE
Sbjct: 557 RAE 559
>gi|22329202|ref|NP_195329.2| endonuclease 2 [Arabidopsis thaliana]
gi|17064948|gb|AAL32628.1| putative protein [Arabidopsis thaliana]
gi|20259962|gb|AAM13328.1| putative protein [Arabidopsis thaliana]
gi|332661206|gb|AEE86606.1| endonuclease 2 [Arabidopsis thaliana]
Length = 408
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/437 (50%), Positives = 278/437 (63%), Gaps = 30/437 (6%)
Query: 84 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 202
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 203 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 323 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 382
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 383 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 442
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+SNP
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSNP 391
Query: 503 EANCGYFKWAFSKSKQK 519
EANCGYFKWA SK + K
Sbjct: 392 EANCGYFKWASSKFRDK 408
>gi|170665738|gb|ACB29408.1| endonuclease [Arabidopsis thaliana]
Length = 408
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 274/440 (62%), Gaps = 36/440 (8%)
Query: 84 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 202
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR N P RWKGG+ T+L+G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRXXNENMPTRWKGGLVTKLKG 120
Query: 203 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
SDH PV++ ++P+IP+HST L SRYLP+I G QQTLVSV KR ++ K + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTXPLXSRYLPMIYGFQQTLVSVFKKRRANEEAKVIEVSCS 180
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
++SN++ D S L N GI CS N E T + A
Sbjct: 181 SSSQSNASSICGDISTG---PLRNCGSMGISLEKSCSFEN-----ESTSVVTEAETVATT 232
Query: 323 ASHSTITQG-SSNHISPFHVDR--ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
S ++ G + + ++ R RKKA+K Q QLSLKSFF S V N++ D+
Sbjct: 233 GSIDNLSDGIRAPSVRAVNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDS 287
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 439
S + +S + + P + P T S E SS
Sbjct: 288 SSSYVSSSPSSQVESITEPNVSRKDDSDPTT----STQEQDQTGSSA------------- 330
Query: 440 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 499
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+
Sbjct: 331 --KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPS 388
Query: 500 SNPEANCGYFKWAFSKSKQK 519
NPEANCGYFKWA SK + K
Sbjct: 389 CNPEANCGYFKWASSKFRDK 408
>gi|227202652|dbj|BAH56799.1| AT4G36050 [Arabidopsis thaliana]
Length = 409
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 204/414 (49%), Positives = 258/414 (62%), Gaps = 30/414 (7%)
Query: 84 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 202
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 203 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 323 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 382
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 383 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 442
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 385
>gi|356561152|ref|XP_003548849.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase 2-like [Glycine max]
Length = 566
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/325 (54%), Positives = 231/325 (71%), Gaps = 6/325 (1%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
M L +F+KDELL +DSEGRC+ITDH HF+LFNVYG +A +DT RIQFK F+ +LQKR
Sbjct: 118 MGDLXEFTKDELLSLDSEGRCIITDHTHFVLFNVYGSQAGGDDTERIQFKQIFYRILQKR 177
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
W LL QGRRIFVV DLNIAP AIDRCD GPDF KNE WF+SML+E+ G F DVFR+K
Sbjct: 178 WGSLLHQGRRIFVVVDLNIAPFAIDRCDIGPDFEKNEXVXWFKSMLIENWGQFSDVFRAK 237
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
HP+RREAYT W NTGAE FN+G+RIDHIL +G C H+ DLQ H+F+ C V ECDIL
Sbjct: 238 HPDRREAYTSWSQNTGAEVFNFGSRIDHILFSGSCXHE-LDLQCHSFIRCLVKECDILTQ 296
Query: 181 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 240
YKR KP + RWKGG S +LEGSDHAPV+M L E+P++ HSTP L++RY+P++ G+QQT
Sbjct: 297 YKRCKPESTLRWKGGRSVKLEGSDHAPVFMSLHEIPDVSLHSTPPLSARYVPMVHGIQQT 356
Query: 241 L----VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGV 296
L +SVLMKR+V+K+ KS + + A +ST + ++ +++ ++ L+
Sbjct: 357 LATKHLSVLMKRQVSKKMKSFEMAQEDIA-MDSTCERKEPVNRAEKAKSSQWSQLSLRSF 415
Query: 297 YCSSSNQESEGEFTKTIENCRDSAN 321
+ S+N ++ ++C D +N
Sbjct: 416 FQKSANLDNGSSVKVVNDSCTDYSN 440
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 341 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 400
V+RA +KAK SQ QLSL+SFF K +N+ DN S VN+S TD S +Q E +
Sbjct: 396 VNRA-EKAKSSQWSQLSLRSFFQKSANL---DNGSSVKV---VNDSCTDYSNNQAEPSQP 448
Query: 401 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 460
+ P S + +G+++ C D G +E +NVA LEW+RIQQLM+
Sbjct: 449 SPRLQETPTVFAHSSSPKKYGLDTDTCDQDLAGPNGSS-TKEEMSNVASLEWQRIQQLMQ 507
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 519
SIP+CKG+KEPC+ARVVKK GP FGRRF+VCA AEGPASN EANCGYFKWA SKSK K
Sbjct: 508 NSIPICKGYKEPCIARVVKKQGPNFGRRFYVCAHAEGPASNLEANCGYFKWASSKSKNK 566
>gi|168059759|ref|XP_001781868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666675|gb|EDQ53323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/519 (37%), Positives = 275/519 (52%), Gaps = 64/519 (12%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+E+ S+ +LL++D EGRC++TDHG F+LFN+YGP ++ R +FKL+F+ LQ RWE
Sbjct: 121 MENMSRQDLLQLDWEGRCLVTDHGSFVLFNLYGPSVGPDNEERYEFKLRFYRALQNRWEG 180
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
LL GRR+ VGD NI+P ID C D+ PDF K+ R WFRS L +GG F DVFR H
Sbjct: 181 LLKNGRRVIAVGDFNISPFPIDSCHSDSNPDFDKSSIRQWFRSQLRANGGPFVDVFREIH 240
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD---------LQSHNFVTCHV 172
P R AYT W +G+E+FNYGTR+D I+ AG C HQ +SH+F TC V
Sbjct: 241 PIREGAYTFWNQMSGSEEFNYGTRLDLIIAAGGCFHQVRSEESNSLLKAEESHHFGTCEV 300
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
+CDIL+++KR+K + PR G + +L+GSDH PVY+ L P + QH P LA+R++P
Sbjct: 301 EDCDILLEFKRFKADSVPRRGGEKTQKLDGSDHVPVYVQLRPQPPLEQHDVPPLAARFMP 360
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 292
IRG QQ++ S L KR SC + A+ +
Sbjct: 361 EIRGRQQSIASFLQKR-------SCSLIMDIEAQKETKPRLS------------------ 395
Query: 293 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 352
L C N +F K+ + + S + T+G N + A + +
Sbjct: 396 LPTATCVRKNPPKVTKFLKSQNSKQKSLHSFFMLPTTKGKENTEAANAFKLAFQDSDSET 455
Query: 353 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 412
L + SL+ N HD ++ +T+ +S +SL Q+ ES +H +P
Sbjct: 456 LLKPSLEQSQTFVINSPHDGDSQ--ETNAEPTDSSNTSSLKQDCTCESQNH---VP---- 506
Query: 413 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEP 472
+V + + +EK A +EW+RIQ+ M +P+C GH EP
Sbjct: 507 --------EAVETVETAETNEKLS-----------AKIEWQRIQKTMMNRVPMCSGHNEP 547
Query: 473 CVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
C V+KKPGP GR+F CARA+GP+SNPEA C YFKW
Sbjct: 548 CATYVMKKPGPNHGRKFHCCARAQGPSSNPEAKCKYFKW 586
>gi|302820698|ref|XP_002992015.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
gi|300140137|gb|EFJ06864.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
Length = 558
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/251 (54%), Positives = 172/251 (68%), Gaps = 7/251 (2%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+E F++ ELL +D+EGRC++TDHGHF+LFNVYGP D R FKL F+ VLQ R E
Sbjct: 124 VEGFTRQELLDLDNEGRCIVTDHGHFVLFNVYGPNVGCGDAERQDFKLNFYQVLQCRLES 183
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
+L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D FR HPE
Sbjct: 184 ILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSDAFRVFHPE 243
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFVTCHVNECD 176
R EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F C + CD
Sbjct: 244 RAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHGNSSCDGFAKCGTDMCD 303
Query: 177 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRG 236
IL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+R++P +RG
Sbjct: 304 ILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAARFMPELRG 363
Query: 237 VQQTLVSVLMK 247
QQ++VS+ K
Sbjct: 364 RQQSIVSIFQK 374
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 349 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 406
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N +
Sbjct: 404 KLQRLSQSRLTRFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNCSE 459
Query: 407 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 466
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 467 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|302762180|ref|XP_002964512.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
gi|300168241|gb|EFJ34845.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
Length = 540
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/251 (53%), Positives = 173/251 (68%), Gaps = 7/251 (2%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+E F++ ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL F+ VLQ R E
Sbjct: 124 VEGFTRQELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLNFYKVLQCRLES 183
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
+L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D FR HPE
Sbjct: 184 ILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSDAFRVFHPE 243
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSHN------FVTCHVNECD 176
R EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH+ F C + CD
Sbjct: 244 RAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHDNSSCDGFAKCGTDMCD 303
Query: 177 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRG 236
IL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+R++P +RG
Sbjct: 304 ILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAARFMPELRG 363
Query: 237 VQQTLVSVLMK 247
QQ+++S+ K
Sbjct: 364 RQQSILSIFQK 374
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 349 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 406
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N K
Sbjct: 404 KLQRLSQSRLTGFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNLSK 459
Query: 407 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 466
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 467 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|224134090|ref|XP_002327753.1| predicted protein [Populus trichocarpa]
gi|222836838|gb|EEE75231.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 187/386 (48%), Gaps = 99/386 (25%)
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
+E FF + + + + CW +TGAEQFN+G+RIDHILCAGPCLHQ+HDLQ +N
Sbjct: 77 IEFKMKFFKILQ------KRSMQCWSLSTGAEQFNFGSRIDHILCAGPCLHQEHDLQGNN 130
Query: 167 FVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL 226
++CHV ECDIL +YKRWK G+ RWKGG RLEGSDHAPVY L E+ +IP HST L
Sbjct: 131 SLSCHVKECDILTEYKRWKLGDTSRWKGGWGIRLEGSDHAPVYTSLEEIHDIPTHSTLPL 190
Query: 227 ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN 286
+SRY ++ C PA S D V +
Sbjct: 191 SSRY-------------------LSANDSWC------PANSWLLHDFNPAGYQVHLQMEM 225
Query: 287 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 346
+L G + NQ D N + I Q + P + +K
Sbjct: 226 -----LLYGREFTDENQ--------------DRPNT---TVILQSQHTKLVP--AEGTQK 261
Query: 347 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 406
KA+KS QLSL+SFF + N+S NS T TS ++ P S +HS+
Sbjct: 262 KARKSWCFQLSLRSFFQRSPNLSTVAENSSTKTS------------PRQAEPNSRNHSSD 309
Query: 407 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 466
SH D+K K +IQQLM+ SIP+C
Sbjct: 310 ---------------------SHAMDDKSSSPNYCK-----------KIQQLMQNSIPVC 337
Query: 467 KGHKEPCVARVVKKPGPTFGRRFFVC 492
KGHKEPCVAR+VKKPGPT GRRFF C
Sbjct: 338 KGHKEPCVARIVKKPGPTLGRRFFAC 363
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 18/59 (30%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+GL++F+KD L+K YGP+A SED RI+FK++FF +LQKR
Sbjct: 50 KGLQEFAKDGLVKF------------------AYGPQAASEDMERIEFKMKFFKILQKR 90
>gi|302820700|ref|XP_002992016.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
gi|300140138|gb|EFJ06865.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
Length = 379
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 139/228 (60%), Gaps = 28/228 (12%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
LE F++ ELL +D+EGRC++TDHG+F+LFN+YGP D R F +LQ R E
Sbjct: 169 LEGFTRQELLDLDNEGRCIVTDHGYFVLFNIYGPNVGCGDVERQDF------MLQCRLES 222
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF---FDVFRSK 120
+L QGRRI +VGDLNI+P I+ CD GP+F N R WFRS+LV F F F K
Sbjct: 223 ILKQGRRIIIVGDLNISPYPINSCDPGPEFDTNPSRQWFRSLLVSEVVRFQTRFACFILK 282
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
EAYTCW +GAE+FNYG+RIDH+L AGPC H CDIL++
Sbjct: 283 -----EAYTCWSQASGAEEFNYGSRIDHVLIAGPC-------AGHYM-------CDILLE 323
Query: 181 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
+KR K PRW GG S +L+GSDHAPV + +P IP H P LA+
Sbjct: 324 FKRAKLDTLPRWSGGRSLKLDGSDHAPVILQFKHLPSIPPHEAPQLAA 371
>gi|260798967|ref|XP_002594471.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
gi|229279705|gb|EEN50482.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
Length = 561
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 165/541 (30%), Positives = 230/541 (42%), Gaps = 114/541 (21%)
Query: 7 FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
F++DEL +D EGR VIT H + NVY PRAD E R FKL+F+ +L
Sbjct: 107 FTEDELRLLDKEGRAVITQHTIRDTDGKECSLAVINVYCPRADPEKEERKDFKLRFYRLL 166
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVES---- 109
Q R + LL G + V+GD+N + ID CD PD F++N R W L++
Sbjct: 167 QTRAQALLQAGSHVIVLGDVNTSHKPIDHCD--PDDIEYFSENPGRKWLDQFLLDPHQTG 224
Query: 110 -----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
GG F D FR HP +R A+TCW + TGA Q NYGTRID+I L+Q
Sbjct: 225 DSGSSESEKGPGGYFVDTFRFFHPTQRSAFTCWSTVTGARQTNYGTRIDYIFANRALLNQ 284
Query: 159 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
D C I+ + +EGSDH PV L + +
Sbjct: 285 FQD-------------CTIMPE-------------------VEGSDHCPVRGELACIV-V 311
Query: 219 PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
P+L S+Y+P G QQ L + K K+G++ + S + S+S G ++ SE
Sbjct: 312 ASGKCPALCSKYMPEFVGKQQKLSAFFTK---VKKGENGEEKSSQDSVSSSQGTSDGHSE 368
Query: 279 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 338
CS + E + + A H
Sbjct: 369 ------------------ICSQQSSSQSWENHSSESEGSSIISTAKHG------------ 398
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
R KK K Q Q +L SFF +++ + D+ + N D +
Sbjct: 399 ----RGMKKQKTDQGKQGTLLSFFGRKTGIEADEKRKANTLDVTQENPERDVACENVVSS 454
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
+S H SN D S H N K + ++N A W+ + +
Sbjct: 455 QSVHPSNSSVDVDDSVRKESKHAEND----------KSTVEMKPKQNQAAF--WKTVLK- 501
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQ 518
P CKGH+EPCV R VKK GP FG++F+VCAR +G +SNP A C +F+W S+ K
Sbjct: 502 GPPPPPPCKGHREPCVLRTVKKQGPNFGKQFYVCARPQGHSSNPAARCDHFQWV-SRGKD 560
Query: 519 K 519
K
Sbjct: 561 K 561
>gi|410900065|ref|XP_003963517.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Takifugu rubripes]
Length = 558
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 159/538 (29%), Positives = 222/538 (41%), Gaps = 120/538 (22%)
Query: 6 DFSKDELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
+FS+DEL +D+EGR VIT H + NVY PRAD E R QFKL F+ +L
Sbjct: 104 EFSRDELQMLDNEGRAVITQHKVNCQDKEEALTVINVYCPRADPEKPERKQFKLHFYQLL 163
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR------------ 103
Q+R E +L G + V+GD+N + ID CD DF +N R W
Sbjct: 164 QRRAEAILKDGSHVIVLGDINTSHQRIDHCDPSDKDDFDENPGRKWLNVFLHGVGQEEEA 223
Query: 104 ----------SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 153
S L SGG F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 224 VEAAEFSEVISTLPGSGGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYGTRIDYIFA-- 281
Query: 154 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213
+H L FV DI+ + +EGSDH PV+ L
Sbjct: 282 ----DRH-LAKGQFVA-----ADIMPE-------------------VEGSDHCPVWGQL- 311
Query: 214 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDT 273
+P P L +RYLP G QQ L ++ + SLP +S +
Sbjct: 312 SCSLLPSTKPPPLCTRYLPEFAGKQQKLSHFFVRADQ---------KSSLPEQSKT---- 358
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSS 333
L G S +E + + + S S + +G
Sbjct: 359 -------------------LPG---SQEEEEKRENLSPVADKTGQKRLLKSDSALPKG-- 394
Query: 334 NHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLS 393
+ K K + Q SL SFF + V++ + T N D +++
Sbjct: 395 ---------KKTKSVKTASNPQGSLLSFF--KPKVTNVIASGDTPVGQRENRQKLD-AVA 442
Query: 394 QEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 453
++ S V+ + EL S CS ++ ++ + + + + W+
Sbjct: 443 PSQI------SRTADVSATAGGEAELRCNGSQPCSSTEENEQRTPTPQAAKKSSSSVFWK 496
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
+ P CK H EPC R VKK GP GR+FFVCAR +G SNP+A C +F+W
Sbjct: 497 SVLH-GPPPPPSCKVHGEPCALRTVKKEGPNMGRQFFVCARPQGHVSNPDARCNFFEW 553
>gi|432866619|ref|XP_004070893.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oryzias latipes]
Length = 553
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 156/535 (29%), Positives = 215/535 (40%), Gaps = 119/535 (22%)
Query: 7 FSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
FS +EL +D+EGR +IT H + NVY PRAD E R QFKLQF+ +L
Sbjct: 105 FSSEELQLLDNEGRAMITKHRIMCQDQEEKTLTVINVYCPRADPEKPERKQFKLQFYKLL 164
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSMLVE------- 108
Q R E +L G + V+GD+N + ID CD +F N R W L
Sbjct: 165 QHRAEAVLKAGSHVIVLGDVNTSHRPIDHCDPCETNEFEDNPGRKWLNEFLHNGSPEDVL 224
Query: 109 ----------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
+ G F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 225 DEDPKQAPELNSGRFVDTFRLFHPTRTNAFTCWSTLTGARQTNYGTRIDYI--------- 275
Query: 159 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
F C + E + + +EGSDH PV+ L +
Sbjct: 276 --------FADCKLAEEQFVAT--------------DIMPEVEGSDHCPVWGKLS-CSVL 312
Query: 219 PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
P P L +RYLP G QQ L L+K V ++ + LP + + ++ +E
Sbjct: 313 PSSKPPPLCTRYLPEFVGKQQKLSRFLIK--VDQKSSQPEQKSVLPG----SQEDDERTE 366
Query: 279 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 338
NV+ S N +L A+ S I +G
Sbjct: 367 NVNPSGANSVKKRLL-----------------------------AADSVIPKG------- 390
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
+ K S Q +L SFF + D T TS + + S P
Sbjct: 391 ----KKTKMQSSSSKPQGNLLSFFKPKVANLKDQEKETTFTSSQSDQKAKASRDSSTVTP 446
Query: 399 ESHHHSNKIP-VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 457
+ + + + C+V + ++V K +L W+ +
Sbjct: 447 AAAEETERASDASSQRCTVLDADKQKNTVQPTVAQSK-----------GASLGFWKSVLH 495
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
P CK H+EPCV R VKK GP G++FFVCAR +G ASNPEA C +F+W
Sbjct: 496 -GPPPAPSCKVHREPCVLRTVKKEGPNVGKQFFVCARPQGHASNPEARCNFFEWV 549
>gi|291239611|ref|XP_002739716.1| PREDICTED: apurinic/apyrimidinic endonuclease 2-like [Saccoglossus
kowalevskii]
Length = 541
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 236/554 (42%), Gaps = 162/554 (29%)
Query: 6 DFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHV 56
DF+ +EL +D+EGR +++ H ++ NVY PR + +D R+ FKL+F+ +
Sbjct: 106 DFTDEELRSLDNEGRALLSLHKIKSSAGKNEDVVIINVYCPRCEPDDQERLNFKLRFYSL 165
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV--------- 107
LQ R E LL GR + VVGD+N++ AID CDA + K R W L
Sbjct: 166 LQTRCEALLSAGRHVIVVGDMNVSHKAIDHCDAAVNPTKP--RQWMDQFLCKLSDMGEII 223
Query: 108 ------------------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143
+S GSF D FR HP+++EA+TCW + TGA Q NYG
Sbjct: 224 DKTSEVNHLIGAVGISPEKVSNYSQSTGSFVDTFRHFHPQQQEAFTCWRTTTGARQLNYG 283
Query: 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 203
TRID+IL + ++ V D +I +EGS
Sbjct: 284 TRIDYILAS---------------MSLQVELLDSII-----------------MPNVEGS 311
Query: 204 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 263
DH PV + L E + P+L+++++P G KQ K F
Sbjct: 312 DHCPVKVTLRCTCETSK-KIPTLSTKHMPEFAG---------------KQQKLSGFFTKA 355
Query: 264 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 323
ES+ T + DS I S + T ENC SA+
Sbjct: 356 AIESSHINTTPEI------------DSKI------------SHPKLTNHYENC--SASNL 389
Query: 324 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQL--SLKSFFHKRSNVSHDDNNSITDTSL 381
T + SN A KK K + ++ ++ FF K+S D+ SI
Sbjct: 390 LKRTSSANESN---------ATKKQKTTNRPKMHGNISDFFQKKSVSKTSDHPSIQ---- 436
Query: 382 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 441
S+++V IP+ + + SV G ++S H + G +
Sbjct: 437 -----------SKDQV---------IPL-ECAISVAPRAGEDAS---HSIPMQSG---MK 469
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
E+ VA +W+ + + PLC+GHKEPCV R V+K G GR+F+VC + EGP SN
Sbjct: 470 DEKKKVAA-KWKNMLSGPKPP-PLCRGHKEPCVLRTVRKTGLNQGRQFYVCTKPEGPKSN 527
Query: 502 PEANCGYFKWAFSK 515
P A C +F+WA K
Sbjct: 528 PNARCDFFQWADKK 541
>gi|348503254|ref|XP_003439180.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oreochromis niloticus]
Length = 563
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 160/542 (29%), Positives = 224/542 (41%), Gaps = 121/542 (22%)
Query: 6 DFSKDELLKIDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVL 57
+FS +EL +D+EGR VIT H + NVY PRAD E R +FKLQF+++L
Sbjct: 104 EFSSEELQLLDNEGRAVITQHKIKCQDKEKILTVINVYCPRADPEKPERKRFKLQFYNLL 163
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES------ 109
Q R E +L G + V+GD+N + ID CD DF +N R W L
Sbjct: 164 QSRAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFLHRGKQEEES 223
Query: 110 ----------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 153
GG F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 224 DEEEHDKESEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGTRIDYIFA-- 281
Query: 154 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213
L FV DI+ + +EGSDH PV+ L
Sbjct: 282 -----DCQLAKEQFVG-----ADIMPE-------------------VEGSDHCPVWGQL- 311
Query: 214 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDT 273
I P +RYLP G QQ L L+K V ++ + +LP
Sbjct: 312 SCSLISSPKPPPFCTRYLPEFAGKQQKLSRFLVK--VDQKSAQSEQKNALPGSQEEEERR 369
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE-NCRDSAN-VASHSTITQG 331
E+ + + +++ S +S + +G+ TKT+ + + N +A + T
Sbjct: 370 ENLNPSGAANISGKKRS-------LTSDSVAPKGKKTKTVNASSKPQGNLLAFFKSKTTN 422
Query: 332 SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 391
+ +P ++D A K ++ S+TDT ++D
Sbjct: 423 INQCENPLNLDEAAKPPITEEV--------------------FSVTDTKSEGPELISDNL 462
Query: 392 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 451
Q ++ H N T +S + D KKG + +
Sbjct: 463 SQQCSTAKTDQHLN----TKHSPPQPTV---------RQSDAKKG----------TSSVF 499
Query: 452 WRRIQQLMETSIPLC-KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510
W+ + L P C K H EPCV R VKK GP G++FFVCAR +G ASNPEA C +F
Sbjct: 500 WKSV--LHGPPAPPCCKVHGEPCVLRTVKKEGPNMGKQFFVCARPQGHASNPEARCNFFA 557
Query: 511 WA 512
W
Sbjct: 558 WV 559
>gi|195996619|ref|XP_002108178.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
gi|190588954|gb|EDV28976.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
Length = 527
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 142/527 (26%), Positives = 223/527 (42%), Gaps = 124/527 (23%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG-----HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 58
+ F+ +EL +D+EGR ++T+H + ++ NVY PRAD E R+ FKL+F+ +LQ
Sbjct: 106 ISKFNSEELSLLDAEGRAILTEHKTDFGRNVVVINVYCPRADPEKPERLNFKLKFYELLQ 165
Query: 59 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI-WFRSML----------- 106
+R E LL G+ + +VGD+N + ID C+ +N W ++L
Sbjct: 166 ERAEALLIAGKHVVIVGDVNTSHKPIDHCEPDIKAMQNSPSCHWLDNLLIPLDSEGKVDS 225
Query: 107 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+ +G F D FR +P R+EA+TCW + T A + NYGTRID+I+
Sbjct: 226 SISAGKKFIDSFRYFYPRRKEAFTCWSTVTSARKTNYGTRIDYIIA-------------- 271
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ D+++ Y + + +EGSDH P+Y L P P
Sbjct: 272 --------DKDLVVSYFA---------ESQIQPEIEGSDHCPIYADLKFTIN-PSDKLPW 313
Query: 226 LASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 285
L ++Y+ Q L L K GK
Sbjct: 314 LCTKYMSEFSKKQSKLTEFL------KLGK------------------------------ 337
Query: 286 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 345
S + SE T I +D+ NV + + + P ++D R
Sbjct: 338 --------------ESTERSEPTNTTRINKMKDT-NVTVDTKGSNQKRDSTCPVNIDVKR 382
Query: 346 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 405
K+ ++ L L FF K SN +H N SI ++ ++E E+
Sbjct: 383 SKSSSNKSCNL-LNYFFTKPSN-THKSNTSIIQPTV------------EKEPLEA----- 423
Query: 406 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 465
+ D + ++ +N+S ++ +++K+ + + + W+ I IPL
Sbjct: 424 ---IKDKKDNNNDSRELNNSQQNNKENKKEDEAAMVANDKSETTKAWKSILS-GPPPIPL 479
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
C GHK P V R VKK GP GRRF+VC EG NP A C +F+WA
Sbjct: 480 CSGHKVPSVMRTVKKSGPNQGRRFYVCTLPEGRRGNPNARCNFFQWA 526
>gi|402910299|ref|XP_003917823.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Papio
anubis]
Length = 518
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 137/527 (25%), Positives = 209/527 (39%), Gaps = 145/527 (27%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVSLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 285
L +R+LP G Q ++ L +P E
Sbjct: 324 LCTRFLPEFAGTQLKILRFL-----------------VPLE------------------- 347
Query: 286 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 345
S +L+ +NQ ++ C++ A V H R R
Sbjct: 348 ---QSPLLEQSALQHNNQTR-------VQTCQNKAQV-----------------HSTRPR 380
Query: 346 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 405
S GQ +LKS+F N + + + ++L + PE +
Sbjct: 381 PSQAGSGRGQKNLKSYFQPSPNCPQ------ASPDIELPSPPLMSALMTPKTPEEEAVAK 434
Query: 406 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 465
+ + S +DEK+ + W+ + PL
Sbjct: 435 VV--------------KGRAKASEAKDEKEVRTSF-----------WKSVLA-GPLRTPL 468
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
C GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 469 CGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|390359970|ref|XP_784420.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Strongylocentrotus purpuratus]
Length = 621
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 158/574 (27%), Positives = 235/574 (40%), Gaps = 155/574 (27%)
Query: 7 FSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
+S +ELL ID+EGR +IT H G ++ NVY PRA ++ R FK++F+++L
Sbjct: 132 YSPEELLSIDAEGRTIITQHQYRKKDGALGDLVIINVYCPRAGDDNPERKSFKMRFYNLL 191
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE---FRIWFRSML-------- 106
Q R E +L G+ + +VGD+N + ID CD ++ K E R W L
Sbjct: 192 QLRAEAMLQAGKSVVIVGDVNASHRRIDHCDPSGNWGKFESHPSRKWLDGFLKDCSCPET 251
Query: 107 VESGGS---------------------------------------FFDVFRSKHPERREA 127
E+ S F D FR HP+R A
Sbjct: 252 AETSPSSQDDLQKSPQEEQELSDEERHVHDDSNIDVEDIPSKDNLFVDSFRYFHPKRENA 311
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
+TCW + TGA Q NYGTRID+I+ + + ECDI+ ++
Sbjct: 312 FTCWSTLTGARQTNYGTRIDYIIV------------NERLCVDELTECDIMPEF------ 353
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL--GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL 245
EGSDH PV L G P H + ++ +P + G QQ L +
Sbjct: 354 -------------EGSDHCPVKATLLGGCSPAEQLH---PMCAKLMPEVAGKQQKLSNFF 397
Query: 246 MKREVAKQGKSCKFSGSLPAESNSTGDTE-DCSENVDRSLNNYCDSGILQGVYCSSSNQE 304
K V+ K ++ E+ G + D + +SL V +
Sbjct: 398 QK--VSPSKKFEMHEKAMSGENKQGGRSRLDIGKREGQSL-----------VGKPGKRAK 444
Query: 305 SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHK 364
++G+ TKT N+AS +KKA Q L+ H+
Sbjct: 445 TDGKVTKT-------GNIASF------------------FKKKADAKLRSQTDLE--IHQ 477
Query: 365 RSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNS 424
S+ S+ N + S + + + S Q + + IPV + G +
Sbjct: 478 SSSSSY--NTRLMPNSQRSDGDIDNGSDFQNRLKD-------IPVDS------GISGSDD 522
Query: 425 SVCSHDQ--DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKP 481
+V Q E + F DK + L W+ + + S P+CKGH+EPC+ R VKK
Sbjct: 523 AVSDASQIVKETSQELFEDKPKAKQQLASAWKNLFKGPPPS-PMCKGHQEPCLLRTVKKA 581
Query: 482 GPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 515
GP G++FFVC R EG +NPEA C +F+W K
Sbjct: 582 GPNLGKQFFVCKRPEGHKNNPEARCNHFEWVSKK 615
>gi|241745915|ref|XP_002405543.1| ap endonuclease, putative [Ixodes scapularis]
gi|215505857|gb|EEC15351.1| ap endonuclease, putative [Ixodes scapularis]
Length = 507
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 208/522 (39%), Gaps = 138/522 (26%)
Query: 6 DFSKDELLKIDSEGRCVITDH--------GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
DF + +D EGR V+T H + NVY PRAD E R Q KL F+ +L
Sbjct: 106 DFDSKNISSVDGEGRTVLTLHHVRCGDKLKRIAVINVYCPRADPEKPERGQIKLDFYELL 165
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS--F 113
++R LL G + ++GDLN + ID CD DF N RIW L S + F
Sbjct: 166 KRRAMTLLRNGLEVIILGDLNTSHRKIDHCDPSDDEDFDSNPGRIWLSQFLENSTTNTCF 225
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
D +R HP +A+TCW + GA Q NYGTRID++LC+ P L +
Sbjct: 226 HDTYRRLHPTTEKAFTCWNTRLGARQTNYGTRIDYVLCS-PAL------------VPFLQ 272
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV---YMCLGEVPEIPQHSTPSLASRY 230
DIL + GSDH PV + C G +P PS+A+++
Sbjct: 273 TADIL-------------------PHVLGSDHCPVEAIFRCDG----VPSPRCPSMATKF 309
Query: 231 LPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDS 290
P G QQ L + L K+ GD E+ DR
Sbjct: 310 WPEFAGRQQRLSAFLSKKP---------------------GDQEEAER--DR-------- 338
Query: 291 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 350
Q SEG ++C S + + + S N AR K
Sbjct: 339 ----------RPQSSEG----WEDSCAVSVELRNGGPPVKKSKNV-------PARTTDKS 377
Query: 351 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 410
+ Q +L FF V+++ TD +S++ SH + +
Sbjct: 378 HKTAQSTLNRFF--------------------VSSNKTDVGVSKQSSRSSHGQAK---LG 414
Query: 411 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHK 470
D V VNS E KR +D W+ + + P CKGH
Sbjct: 415 DCGLPV-----VNSGTNVSGAPEPAPKRAVD------VACAWKSLLKGPPVPPP-CKGHG 462
Query: 471 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
E CV R VKKPGP GR+FFVCAR G + + A+C +F+W
Sbjct: 463 EQCVLRTVKKPGPNLGRQFFVCARPTGKSGDVNASCEFFQWV 504
>gi|358058458|dbj|GAA95421.1| hypothetical protein E5Q_02075 [Mixia osmundae IAM 14324]
Length = 1197
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 224/548 (40%), Gaps = 86/548 (15%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
+ S E+ IDSEGR + D G F+L NVY P + D R+ FK+ F H+L +R L+
Sbjct: 127 ELSSFEMRDIDSEGRTTVVDLGLFVLINVYCPNETNSD--RLTFKMAFNHLLDERVRQLI 184
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGP--------DFAKNEFRIWFRSMLVESGGSFFDVF 117
GR + VVGDLNI ID CD DF + R W S + + G D
Sbjct: 185 KLGREVIVVGDLNICAQTIDHCDPEKRKAEQNLDDFQAHPARAWL-SAFIGASGVMIDST 243
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNEC 175
R HP R YT W + A NYGTR+D+IL L + D+Q+H + H C
Sbjct: 244 RFFHPTRTNMYTHWETKINARVTNYGTRLDYILVTPGLLPWIKAADIQAHVVGSDH---C 300
Query: 176 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 235
+ ID+ N G + E + P + VP+ P+ +A+RY
Sbjct: 301 PVFIDFHPEISLN----DGTKQSLWEAVN--PGRERVDPVPDPPR-----MAARYYNSFA 349
Query: 236 GVQQTLVSVLMKR--EVAKQGKSCKFSGSLPA-ESNSTGDTEDCSENVDRSLNNYCDSGI 292
G Q L + +K+ E Q ++ LPA E T SE+ ++
Sbjct: 350 GTQSLLKTFFVKKKDESPVQARTVT---PLPAPEMRRDASTSRVSES--------PEAPT 398
Query: 293 LQGVYCSSSNQESEGEFTKTIENCRDSANVASH--------STITQGSSNHIS--PFHVD 342
L + + + + E T IE+ D +A H ST T SS P
Sbjct: 399 LASAFATIRSSKPERHATIMIEDDDDDDEIAEHPQPRSRSTSTATAQSSRPPDKRPRSDS 458
Query: 343 RARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
+R + K QL GQ +L SFF S +DT + VP
Sbjct: 459 ASRSQPPKKQLNVRNGQSTLASFFAD-------------PVSGKTRRPESDTKKRRSTVP 505
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
S + P SCS +++ +R ++ + A +W +
Sbjct: 506 GSQSENLDEP----SCSASTSQRASATASETAAQADGYERLPLQDSDPQAASQWNAL--F 559
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS------------NPEANC 506
++PLCK HKEPC V KPGP GR+F++C+R G NP+ C
Sbjct: 560 SPLAVPLCKMHKEPCTLWTVNKPGPNKGRKFYLCSRPVGQGHEEAASKNKNVILNPDYRC 619
Query: 507 GYFKWAFS 514
+F+W+ S
Sbjct: 620 NHFEWSQS 627
>gi|323508160|emb|CBQ68031.1| related to APN2-AP endonuclease, exonuclease III homolog
[Sporisorium reilianum SRZ2]
Length = 737
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 155/587 (26%), Positives = 230/587 (39%), Gaps = 131/587 (22%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGRCV+ D G F+LFNVY P + R+++K+ ++ L +R L+ GR++ +V
Sbjct: 132 LDDEGRCVVLDLGLFVLFNVYCPNETGPE--RLEYKMTYYQGLAERAHRLIQAGRQVMIV 189
Query: 75 GDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GD+NI ID CDA G D F ++ R WF++ L G F DV R HPER++
Sbjct: 190 GDMNIIRDPIDHCDAEQSMKEYGWDHFHQHPARSWFQTFLAPHG-KFHDVGRLYHPERKK 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYKRW 184
+TCW + A NYG R+D+ L L + D+Q + + H C I +D
Sbjct: 249 MFTCWNTLIDARPANYGVRLDYTLVTEGLLDWIKGADIQPDVYGSDH---CPIYVDL--- 302
Query: 185 KPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV 244
+ R G +L H G +P P+LA+ + G Q+ L S
Sbjct: 303 ---HDERQIDGKMVKLADLMH-------GGADRLP----PALAACHYDEFSGKQRKLASF 348
Query: 245 L-MKREVAKQGKSCKFSG-SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSN 302
++ KSC +G SL + +T + + N S + D G +Q S++
Sbjct: 349 FGASKKAVPTTKSCSPAGTSLADQGKTTAEVKSTLSN-GSSTKDGTDGGAIQ-TSTSTAG 406
Query: 303 QESEGEFTK-------------TIENCRDSANVASHSTITQGSSNHISPFHV-------- 341
ESEG IE +N A +T + + + P
Sbjct: 407 IESEGSSLADALFSLHSQQEGLNIEMAASQSNAAPATTSSTPAVEPVPPASAPVATTAVS 466
Query: 342 ---------------------------------DRARKKAKKSQLGQLSLKSFFHKRS-- 366
D + K S GQ SL+SFF K
Sbjct: 467 TPSPTKAPASQPSPSGRRDSALAKRAPAATKGKDSGKAKNGASLKGQTSLQSFFAKPKST 526
Query: 367 ------------NVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC 414
++S + S VN+SV T + ++P + + D C
Sbjct: 527 SSTASSEPTKVMDLSQETGGSKAPPPAPVNDSVAGT-VPNTDIPAASYDETD----DAIC 581
Query: 415 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCV 474
HE ++ + ++ R A L W I PLC+ H EPC
Sbjct: 582 DFHE--ATTTTFPAPPAEQSAADRV-------GASLAWGAI--FSPIPAPLCRSHSEPCR 630
Query: 475 ARVVKKPGPTFGRRFFVCARAEGPA----------SNPEANCGYFKW 511
A V KPGP GR+F++C R GP NPE C +F W
Sbjct: 631 AWTVNKPGPNHGRKFWLCNRPVGPGYEKSGRAKGDVNPEFRCNFFLW 677
>gi|156398432|ref|XP_001638192.1| predicted protein [Nematostella vectensis]
gi|156225311|gb|EDO46129.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 134/265 (50%), Gaps = 53/265 (20%)
Query: 5 EDFSKDELLKIDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQK 59
E+F+ D+L ++DSEGR ++T+H G ++ NVY PRAD E+ RIQFKL+F +L K
Sbjct: 104 EEFTSDQLSRLDSEGRTILTEHTLSSGGTVVIINVYCPRADMENEDRIQFKLEFHRLLSK 163
Query: 60 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE--------- 108
R + LL G+ + V+GD+N A ID C+ DF+ R W +LV
Sbjct: 164 RVKALLNSGKHVIVLGDINAAHKPIDHCNPCKYEDFSSFPGRAWLDELLVSLPLPDNSCD 223
Query: 109 -----SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
G D FR HP +REAYT W ++TGA Q NYGTRID+IL P L Q+
Sbjct: 224 SSWKCVSGLLIDSFRYFHPLQREAYTNWSTSTGARQTNYGTRIDYILVDPPLLQQE---- 279
Query: 164 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 223
FV C + +EGSDH PV +C + + + T
Sbjct: 280 ---FVDCVIRP------------------------EVEGSDHCPV-VCTLKNRFLAANKT 311
Query: 224 PSLASRYLPIIRGVQQTLVSVLMKR 248
P L ++++P G QQ LVS K+
Sbjct: 312 PLLCTKFMPEFSGKQQKLVSFFTKK 336
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 355 QLSLKSFFHKRSN----VSHDDNNS--ITDTSLNVNNSV------------------TDT 390
Q L SFF K+++ V D NN I++T L+ +N+ T+
Sbjct: 326 QQKLVSFFTKKTDNAFTVPTDLNNEKVISETELSASNTTKKRAPSSGSAVPNPKRAKTEK 385
Query: 391 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 450
S Q + N + C V + S + +D K + L ++
Sbjct: 386 STRQNTLLNFFGSKNVTKASSPKCIVDIVTDKPSGEVTR-EDTKSNQNMLLNPEPYSSVS 444
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510
W+ I + PLC GH EP V R VKK GP +GR+F+ CAR EG ASN EA C +FK
Sbjct: 445 AWKSILK-GPPPAPLCPGHNEPSVLRTVKKKGPNYGRQFYCCARPEGHASNKEARCNFFK 503
Query: 511 W 511
W
Sbjct: 504 W 504
>gi|121704746|ref|XP_001270636.1| ap endonuclease [Aspergillus clavatus NRRL 1]
gi|119398782|gb|EAW09210.1| ap endonuclease [Aspergillus clavatus NRRL 1]
Length = 620
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 141/566 (24%), Positives = 225/566 (39%), Gaps = 120/566 (21%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E L + D ++ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 113 LEQLSELETDPVI-LDSEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRHNFIDLMDTR 169
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG 110
L+ G+R+FV GD+NIA ID A +F R F +L +
Sbjct: 170 IRNLVAMGKRVFVTGDINIARGEIDAAHATEAIRKGTATEDEFVSTPARRVFNQLLSDGK 229
Query: 111 -----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+ FD+ RS HPERR YTCW A NYG+RID++LC+
Sbjct: 230 VLGARDEGREEPALFDICRSFHPERRGMYTCWEQRINARPGNYGSRIDYVLCS------- 282
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
L + ++ CD + L GSDH PVY + +
Sbjct: 283 --LNTQDWF------CD-----------------SNIQEGLMGSDHCPVYAVFKDTVRLE 317
Query: 220 QHSTPSL------------------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 261
+ L ++YL G L+ KR K S K S
Sbjct: 318 EREVNMLDIVNPPGMFKNGERQQEYTTKYLLPTSG---RLIPEFDKRRSIKDMFSRKPST 374
Query: 262 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS-SNQESEGEFTKTIENCRDSA 320
++P ST ++ +G+ + ++ S+Q+ +G K +
Sbjct: 375 TMP---TSTPRVPTLEHSMSTQETQVSTAGLGSPIKTAAGSSQQIKGVVRKRSQK----- 426
Query: 321 NVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 376
S I+P V R++ +++ GQ SL+ FF +++ SI
Sbjct: 427 ------------SEVIAPVSVKRSKSGTAQQSTPPTAGQTSLRGFFKPKNDAVGRTGRSI 474
Query: 377 TDTSLNVNNS-VTDTSL-----SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 430
+ +V+N +T+ S+ S E + + + TD + + N +
Sbjct: 475 SGNPESVSNGIITEQSVAFPIKSTEVATSTSSEAMQAVPTDTATQGDQPDLSNPIAPASS 534
Query: 431 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
QD G +D V+ +W ++ + +P C+GH+EPC++ KKPG GR F+
Sbjct: 535 QD---GGFVIDP---IVSKEDWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRAFW 586
Query: 491 VCARAEGPASNPEAN----CGYFKWA 512
+C R GP+ N E C F WA
Sbjct: 587 ICPRPLGPSGNKEKGTQWRCPTFIWA 612
>gi|302761446|ref|XP_002964145.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
gi|300167874|gb|EFJ34478.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
Length = 589
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 89/142 (62%), Gaps = 7/142 (4%)
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 116
L+ R +L +GRRI +VG LNI+P ID CD GP F + R WFRS+LV GG+F D
Sbjct: 262 LRGRLCRILKRGRRIIIVGHLNISPYPIDSCDPGPKFDTDPSRQWFRSLLVSEGGAFSDS 321
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFVT 169
FR HPE EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F
Sbjct: 322 FRVFHPEIAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQCPDGSHENSSCDGFAE 381
Query: 170 CHVNECDILIDYKRWKPGNAPR 191
C + CDIL+++KR K PR
Sbjct: 382 CGTDMCDILLEFKRAKLDTLPR 403
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
W R++ LM ++ CKGH E CV R VKK GP GR F+VC RA+GPAS
Sbjct: 535 WERLKSLMSRNLLSCKGHGETCVVRTVKKAGPNLGRGFYVCTRAKGPAST 584
>gi|443713485|gb|ELU06313.1| hypothetical protein CAPTEDRAFT_176829 [Capitella teleta]
Length = 486
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 128/265 (48%), Gaps = 49/265 (18%)
Query: 7 FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRA--DSEDTV-RIQFKLQFF 54
+++DE+ +D+EGRC++T H + NVY P A D D+V R+ FKL+F+
Sbjct: 107 YTEDEIRSLDNEGRCIMTQHKMLSDDGEEIRLTVINVYCPMAVLDDPDSVERMAFKLKFY 166
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML---VES 109
+LQKR E +L G + ++GD+N + ID CD +F ++ R W ++L S
Sbjct: 167 DLLQKRAEAILQSGSHVIILGDVNASHRPIDHCDPCDEKEFNQHPSRKWLNNLLRTPTNS 226
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
G F D FR HP++REAYTCW + TGA NYGTRID+I + V
Sbjct: 227 NGLFVDSFRHFHPDQREAYTCWQTLTGARATNYGTRIDYI------------IGDTRLVE 274
Query: 170 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 229
++C IL D + GSDH PV L IP P L S+
Sbjct: 275 DSFSDCVILPD-------------------VRGSDHCPVKAVL-HWECIPAKKYPPLCSK 314
Query: 230 YLPIIRGVQQTLVSVLMKREVAKQG 254
YLP G QQ L S K K G
Sbjct: 315 YLPEFVGKQQKLSSYFSKGSGPKSG 339
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 515
+ PLC GHKE C+ R VKK GR F+VC R EG SN EA C +F+W K
Sbjct: 433 TAPLCSGHKEACLLRTVKKDSLNKGRDFWVCNRPEGHKSNKEARCEHFEWVSKK 486
>gi|327261945|ref|XP_003215787.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Anolis
carolinensis]
Length = 530
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 122/261 (46%), Gaps = 49/261 (18%)
Query: 6 DFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHV 56
DF+ +EL +DSEGR VIT H + NVY PRAD E R +FKL+F+H+
Sbjct: 106 DFTTEELQALDSEGRAVITRHRICTSEQQETTLTVVNVYCPRADPEKPERGEFKLRFYHL 165
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS-- 112
LQ R E LL G + ++GD+N A ID CD G F ++ R W L E G
Sbjct: 166 LQARAEALLRAGGHVVIMGDINTAHKPIDHCDPGDLESFQEHPGRNWLDGFLWEPGKESP 225
Query: 113 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
F D FR HP ++EAYTCW + TG+ NYGTRID+IL
Sbjct: 226 HGELFVDTFRFLHPTQKEAYTCWCNVTGSRHLNYGTRIDYIL------------------ 267
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
+ L + K + + + GSDH PV L V + P L +
Sbjct: 268 ---ADRALALSELK----------EAQLRPEVFGSDHCPVQAVLKSVC-LGAPRCPPLCT 313
Query: 229 RYLPIIRGVQQTLVSVLMKRE 249
R+LP G QQ L L+K E
Sbjct: 314 RFLPEFAGTQQKLSRFLVKVE 334
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H EPCV R VKKPG GRRF+VCAR G +S+P A C +F WA
Sbjct: 477 PLCKAHGEPCVLRTVKKPGANCGRRFYVCARPLGKSSDPRARCDFFLWA 525
>gi|55741922|ref|NP_001006804.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
gi|49903339|gb|AAH76676.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
Length = 517
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 60/295 (20%)
Query: 5 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 55
E+F ++EL +D EGR V+T H + NVY PRAD E R +KL+F+
Sbjct: 103 EEFLEEELQSLDQEGRAVLTQHRIRNCEGKEETLTVINVYCPRADPEKPERKTYKLRFYR 162
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE----- 108
+LQ R E +L +G + ++GD+N + +D CD F +N R W L +
Sbjct: 163 LLQTRAEAILQKGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPVPSQ 222
Query: 109 ----------SGGS--FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
SGGS F+D FR HP +R A+TCW S +GA Q NYGTRID+IL
Sbjct: 223 KGDSETGTPPSGGSGRFYDSFRYFHPTQRNAFTCWCSASGARQTNYGTRIDYIL------ 276
Query: 157 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216
+L F+ D +I +EGSDH PV + P
Sbjct: 277 -GNSELVEREFL-------DSII-----------------MPEVEGSDHCPVKAVMKCRP 311
Query: 217 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 271
I + P L ++YLP G QQ L+ LMK+E + + S L ++S++ G
Sbjct: 312 -IAANKCPPLCTKYLPEFAGRQQKLLQFLMKKENTSGNATEESSELLGSQSSAEG 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 516
P CKGH EPCV R VKK GP GR+F+VCAR EG ++NP+A C +F W K+
Sbjct: 461 PNCKGHGEPCVLRTVKKAGPNCGRQFYVCARPEGHSTNPQARCNFFLWLTKKA 513
>gi|297735010|emb|CBI17372.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
+++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASN
Sbjct: 34 RDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASN 93
Query: 502 PEANCGYFKWAFSKSKQK 519
PE NCGYFKWA SKS+ +
Sbjct: 94 PETNCGYFKWAASKSRHR 111
>gi|41055919|ref|NP_956440.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Danio rerio]
gi|28278715|gb|AAH44527.1| Zgc:55889 [Danio rerio]
gi|182890762|gb|AAI65311.1| Zgc:55889 protein [Danio rerio]
Length = 558
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 136/300 (45%), Gaps = 73/300 (24%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHV 56
+ + +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +
Sbjct: 104 ELTSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRL 162
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE---- 108
LQ R E +L G + ++GD+N + ID CD PD F N R W L E
Sbjct: 163 LQCRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAEN 220
Query: 109 ------------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 221 SENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI- 279
Query: 151 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 210
+H+ V DI+ + +EGSDH PV+
Sbjct: 280 -----------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWA 309
Query: 211 CLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 269
L + P+ P + +R++P G QQ L L K KQ S SLP ++
Sbjct: 310 QLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNSSEKSLPGSQDA 366
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV 554
>gi|392589509|gb|EIW78839.1| DNase I-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 638
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 147/569 (25%), Positives = 220/569 (38%), Gaps = 130/569 (22%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+EG D D L +D EGR ++ D G F+L NVY P S+ R+ +K+ + +LQ+R
Sbjct: 126 VEGESDAPSD-LSVLDEEGRGLVIDLGLFVLINVYCPNETSD--TRLPYKMNYHFMLQER 182
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFD 115
L+ +GR++ VVGD+N+ A ID CD F + R WF++ G D
Sbjct: 183 VRKLVAEGRQVMVVGDINVCAAPIDHCDGHLPSNVETFYDHPARAWFQNWR-HPQGEMID 241
Query: 116 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 175
V R PER+ YTCW + A NYGTRID++L
Sbjct: 242 VLRQFWPERKGMYTCWNTKISARDTNYGTRIDYVLVT----------------------- 278
Query: 176 DILIDYKRWKPGNAPRWK-GGMSTRLEGSDHAPVYMCL--------GEVPEI-------- 218
PG P + G + ++GSDH P+Y+ L G++ +
Sbjct: 279 ----------PGLMPWIRHGDIQASVKGSDHCPIYVDLRDEITTESGKIIYLKDVMPVDG 328
Query: 219 -PQHSTPSLASRYLPIIRGVQQTLVSVLMK-----------------REVAKQGKSCKFS 260
Q P +A++ G QQ L + K +EV K+ + S
Sbjct: 329 NAQRVPPRIAAKRWDEFSGKQQLLSTFFGKKGKAPATPQADSSQPAAKEVPPATKTRQSS 388
Query: 261 GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 320
G+ A S S DT + ++ S++ D G L+ + S
Sbjct: 389 GTRTA-SQSATDTIEHPSSIPESID--VDVGSLKPSPSPTPQPSSTPN------------ 433
Query: 321 NVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 380
N +S S+ + P A K AKK + GQ S+ SFF + S N+ TS
Sbjct: 434 NPSSQSSSSTAGQKRKLPRAQSAASKPAKKPKPGQSSIASFFAQPLAPSFSPPNT---TS 490
Query: 381 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH-----ELHGVNSSVCSHDQDEKK 435
+ + TD + + V ++ DY ++ E V + S + K
Sbjct: 491 IASRSQDTDRNPDRGPVTLPISAADPDLDADYQLALKLSQELEAEPVPPAATSTKESSKA 550
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W + + + P C H EP V K GP G+ F++C+R
Sbjct: 551 ----------------WSNL--MAPVAAPNCTVHDEPTKLYTVNKQGPNKGKTFYLCSRP 592
Query: 496 EGPA------------SNPEANCGYFKWA 512
GP N E C YFKWA
Sbjct: 593 VGPGYDRGRSERLREEVNHEYRCNYFKWA 621
>gi|449662096|ref|XP_002160726.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Hydra
magnipapillata]
Length = 516
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/518 (26%), Positives = 201/518 (38%), Gaps = 129/518 (24%)
Query: 10 DELLK-IDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
DELL+ +DSEGRC+IT+H + NVY PRAD E+ R +K+ F+ +LQ R
Sbjct: 110 DELLRSLDSEGRCMITEHVTSDGQRLCIINVYCPRADVEEKERFHYKMCFYRLLQMRIIS 169
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF--------- 114
L+ + R I VVGDLN++ ID CD DF + R W S++ G F
Sbjct: 170 LMREKRNIIVVGDLNVSHKRIDSCDPCEDFEDSPARKWLDSIIDFKGSESFSEKNVNNFL 229
Query: 115 -DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
D FR HP + AYTCW + T A + N+GTRID IL H T N
Sbjct: 230 VDTFRIFHPNEQNAYTCWNTQTRARETNFGTRIDFILA------------DHQLCTVLTN 277
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 233
C IL D ++GSDH PV + + + P + ++P
Sbjct: 278 -CVILAD-------------------VQGSDHCPVVADFNILLK-ASNLIPKTCAAFMPE 316
Query: 234 IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 293
I G Q + S F S ES+ G + R LN+ +S
Sbjct: 317 IFGKQSDIKS---------------FFSSKRFESDREG--------IKRKLNDSTESRF- 352
Query: 294 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 353
Y N + + K + +++ +HS S+H+ + + ++ S+L
Sbjct: 353 ---YKKKKNVDQDFSIIKYFK----ASDTENHS-----RSSHVEISNFQSSTEEISCSRL 400
Query: 354 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 413
L L N S + I D S +V + S + V K T+
Sbjct: 401 SNLELS------HNSSSSNFAYIIDNSNMNYYAVKEASSFESAVLYESSMKQKTENTNKE 454
Query: 414 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 473
L G S+ H EK R + K+ NN
Sbjct: 455 IWKKILKGPESTPLCHGHKEKAVLRTVKKQGNN--------------------------- 487
Query: 474 VARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
FGR+F+ C++ G +SN A CG+F W
Sbjct: 488 -----------FGRQFYACSKPVGSSSNKNAGCGFFVW 514
>gi|320163021|gb|EFW39920.1| apurinic/apyrimidinic endonuclease 2 [Capsaspora owczarzaki ATCC
30864]
Length = 734
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 112/248 (45%), Gaps = 45/248 (18%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
D L +DSEGRCV+TDH F+LFN+Y PRADS + R+ FK +F+ VLQ R L
Sbjct: 305 DMDPTVLDALDSEGRCVVTDHDRFVLFNLYCPRADSAEGERMTFKQEFYRVLQLRVNALR 364
Query: 66 CQGRRIFVVGDLNIAPAAIDRC--------DAGPDFAKNEFRIWFRSMLVESGGSFFDVF 117
GR + V GD N+ ID C D DF + R W S L E D F
Sbjct: 365 TAGRCVIVAGDFNLTHRRIDHCDPENYTTDDGSVDFEAHPSRRWMESFLAE---GRVDCF 421
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 177
R HP YTCW +T A + NYGTRID+I+ + + ++ C
Sbjct: 422 RHFHPLLSSRYTCWRVDTRARETNYGTRIDYIV-------------TDQALLPDISGCYH 468
Query: 178 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE--IPQHSTPSLASRYLPIIR 235
L TR GSDH PV + IPQ + P L +RYLP +
Sbjct: 469 L-------------------TRFPGSDHCPVVITAAPTLRLTIPQRNPPKLCARYLPGMG 509
Query: 236 GVQQTLVS 243
G L S
Sbjct: 510 GKTVQLTS 517
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 464 PLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
P C GH EPCV R VK GR+F+VC R +G +NPEA+C +FKW
Sbjct: 685 PRCTGHGEPCVERTVKNGSAQNIGRKFYVCGRPKGHTNNPEASCNFFKW 733
>gi|296804272|ref|XP_002842988.1| ap endonuclease [Arthroderma otae CBS 113480]
gi|238845590|gb|EEQ35252.1| ap endonuclease [Arthroderma otae CBS 113480]
Length = 574
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 135/545 (24%), Positives = 216/545 (39%), Gaps = 105/545 (19%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P + D R F+L F ++L R
Sbjct: 94 IEQMEELSEIDPVALDSEGRCLILEFPAFVLIGVYCPA--NRDESRDGFRLGFLNILDAR 151
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSML---- 106
L+ G+R+ + GDLNI+PA ID A ++ + R F +++
Sbjct: 152 VRNLIKMGKRVVLTGDLNISPAPIDSAPATERIRKSAETEEEYISSPARCLFNTLVRRVG 211
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
VE+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 212 STGDADNVETPPVLRDLCREFHPHRTGMYTCWEQRVNARPGNYGSRIDYILCS------- 264
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
D H FV ++ E L GSDH PVY +G+ +
Sbjct: 265 -DDIRHWFVESNIQEG------------------------LMGSDHCPVYASIGDRVRLD 299
Query: 220 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 279
L I+ + + R V + SG + E + + +D +
Sbjct: 300 GKDV-----HILDIMNPIGSFEDGIEQPRPV--KISPLPLSGKMIPEFDRRRNIKDMFKK 352
Query: 280 VDRS-LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 338
S N+ Y S +S + +EN + + G +SP
Sbjct: 353 HSLSRTNSEIKVSAETDTYTGSETSDSGSQSKIAMENKNTPLTMNPPTKRGHGKVAQVSP 412
Query: 339 FHVDRARKKAKKSQL-GQLSLKSFF--HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 395
+ + + S+ GQ +L FF + S V ++N +++ S
Sbjct: 413 SKRLKQKSRPVGSRSNGQQTLAGFFKSERTSRVVGEENATVSTIS--------------- 457
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL----- 450
P+ H + TD + E N +V + K F+D + VA
Sbjct: 458 --PQGSHAETQPNPTDEPSATAE---ANDTVPTETT-----KTFVD---DYVAFSCSPTE 504
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 506
W ++ + +P C+GH E C++ V KKPG GR F++C+R GP+ + E C
Sbjct: 505 SWSKV--FTKKPVPKCEGHDEDCISLVTKKPGMNCGRSFWICSRPLGPSGDKETGTPWRC 562
Query: 507 GYFKW 511
F W
Sbjct: 563 PTFIW 567
>gi|392565223|gb|EIW58400.1| DNase I-like protein [Trametes versicolor FP-101664 SS1]
Length = 632
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 137/539 (25%), Positives = 209/539 (38%), Gaps = 107/539 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFV 73
+D+EGR ++ D G F+L NVY P S+ R+ FK+ + +LQ+R L+ + R + V
Sbjct: 137 LDAEGRGLVVDFGLFVLINVYCPNETSD--ARLSFKMNYHLMLQERVRKLIEEEHREVIV 194
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+GD+N+ +D + +++ F R WF G DV R+ PER+ Y
Sbjct: 195 LGDINVCATPLDHAEGHFASSQDTFYDHPARAWFHKWR-SPNGPMIDVIRTFWPERKGLY 253
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
TCW + A + NYG RID+IL L SH
Sbjct: 254 TCWNTKLQARETNYGGRIDYILVTKGLL----PWISH----------------------- 286
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL--------GEVPEI--------PQHSTPSLASRYLP 232
G + L+GSDH P+Y+ L GE + P LA+++
Sbjct: 287 -----GDIQPSLKGSDHCPIYIDLRDEIVLESGETVTLRDAMQQTDVARDPPRLAAKFWD 341
Query: 233 IIRGVQQTLVSVLMKREVAK------QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN 286
G Q L + KR V+K Q SGS ++ G++ +VD L
Sbjct: 342 EFSGKQTVLSAFFGKRAVSKDASNNEQQTPPILSGS--QRADPPGNSSAVM-DVDVQL-- 396
Query: 287 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 346
S +S E +K I+ + S + +T N P +
Sbjct: 397 ---SATQSASQPIASTPAPSPEVSKKIKPPQPSKLAPTSAT------NKRKPLEPTASSS 447
Query: 347 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 406
K +K GQ SL SFF K + S + + + + + T ++L+ + P S ++
Sbjct: 448 KKRKQVKGQASLASFFSKPAAASPSKSREVIEIEDDAPTAST-SALAPDTPPLSQAEQDQ 506
Query: 407 IPVTDY--SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 464
+ DY +C + + S S QD + K W + P
Sbjct: 507 L-DADYRLACELAQEDAEPSPTPSSSQDPTQKK------------AAWSEL--FAPIQPP 551
Query: 465 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 511
C H EP V KPGP G+ FF+C+R GP + C YFKW
Sbjct: 552 HCTVHGEPTKMYTVNKPGPNKGKTFFICSRPVGPGYDKGKSERLREEVDHRYRCNYFKW 610
>gi|402223533|gb|EJU03597.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 616
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 140/546 (25%), Positives = 211/546 (38%), Gaps = 110/546 (20%)
Query: 4 LEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV 56
L DF DE ++++D+EGR ++ D G F+L N Y P SE+ R+ FK+ F ++
Sbjct: 123 LLDFIPDEKGAIPSDVIELDNEGRALVLDFGLFVLINTYCPAEASEN--RLSFKINFHNM 180
Query: 57 LQKRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESG 110
L++R L+ + R + VVGD+NI ID CD ++ + R+W R L +
Sbjct: 181 LRERVRILIEEEHREVIVVGDINICSQPIDHCDGRLQSKRSVWWDHPPRVWLRDWL-QPT 239
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 170
G D+ R P+R YTCW + A NYGTRID++LC +
Sbjct: 240 GKLVDLTRKFWPDRTGMYTCWNTLIDARTANYGTRIDYVLCT-------------EGLIP 286
Query: 171 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS-- 228
+ DIL + + GSDH PV++ + +P L
Sbjct: 287 WIMHSDILPN-------------------VHGSDHCPVFVDFFDEITLPDGKVRRLREEM 327
Query: 229 RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 288
+Y P + + R + +FS P S+ G T + +DR ++ C
Sbjct: 328 KYDP----------TRALPRIATRNWD--EFSNKQPLLSSFFGKTA-ITPPIDRPPSSSC 374
Query: 289 D---SGILQGVYCSSSNQESEGEFTKTIENC--RDSANVASHSTITQGSSNHISPFHV-- 341
D + Q + S + N RD+A + + + SS S
Sbjct: 375 DPKEQPMSQAPETTFETSHSPDSLSDAASNAVSRDTAPLPAQVVVGAPSSAPKSQRQATS 434
Query: 342 ---DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
++ + K+ + QL L SFF + S T S+ +
Sbjct: 435 QDRNKGKDAKKRPKNRQLKLSSFFGAK----------------GAAESSTQAVPSKVKSS 478
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
+S S + P S E+ VC + G E + A W I L
Sbjct: 479 KSRTPSQRTPSQSTQNSTSEIEDSEDDVCWEKIIGQSGA----SESSKAA---WSNI--L 529
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANC 506
S P C GH P VV KPGPT GR F++C+ G NPE C
Sbjct: 530 TRPSAPKCSGHGLPAKEFVVNKPGPTKGRHFYLCSLPVGTGYDAGHSKRLREEVNPEFRC 589
Query: 507 GYFKWA 512
+F WA
Sbjct: 590 NFFMWA 595
>gi|336366993|gb|EGN95339.1| hypothetical protein SERLA73DRAFT_171084 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379716|gb|EGO20871.1| hypothetical protein SERLADRAFT_477369 [Serpula lacrymans var.
lacrymans S7.9]
Length = 618
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 138/549 (25%), Positives = 219/549 (39%), Gaps = 114/549 (20%)
Query: 8 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 67
+ +L +D+EGR ++ D G F+L N Y P S+ R+ FK+ + ++LQ+R L+ +
Sbjct: 130 TPSDLSVLDAEGRAIVLDFGLFVLINTYCPNETSD--ARLPFKMNYHYMLQERVRGLMEE 187
Query: 68 GRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
GR + VVGD+NI +D CD F ++ R WF S L + G D+ R P
Sbjct: 188 GREVLVVGDINICATPLDHCDGNLASNASYFHEHPARAWFHSWL-DPTGHMIDIVRRFWP 246
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
+R+ YTCW + A + NYGTR+D+IL +H V
Sbjct: 247 DRKGMYTCWNTKISARETNYGTRVDYILV------------THGLVP------------- 281
Query: 183 RWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGEVPEI----------------PQHSTP 224
W G + L+GSDH P+Y+ L + + + P
Sbjct: 282 ---------WVKHGDIQPSLKGSDHCPIYIDLHDSITLDSGVKLHLRDVMQMNGEKREPP 332
Query: 225 SLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 284
+A++Y G +QTL+S +K+G + SG+ P+ + T S + +
Sbjct: 333 RIAAKYWEEFSG-KQTLLSTFF----SKKGGALP-SGASPSPAELTPVVTGPSVTLPAEV 386
Query: 285 NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 344
S LQ N + + S+ S + +Q P +
Sbjct: 387 -----STTLQVTPVRLPNTSGAS--STSSSQPPYSSKQTSAPSPSQKRKLLTEP--RESM 437
Query: 345 RKKAKKSQLGQLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 401
RK +KK + GQ SL +FF + S + H + S + L + ++ T+ P+ +
Sbjct: 438 RKASKKVKKGQTSLSTFFSQPSASQTLPHTPSVSRMEDVLVILHADTN--------PDGY 489
Query: 402 HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 461
S DY ++ EL + S +K W Q L
Sbjct: 490 IAS------DYRMAL-ELSNSQEKIVSQSCASATSSSSHNKT-------AWS--QLLAPV 533
Query: 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYF 509
P C H EP V KPGP G+ FF+C+R GP + + C +F
Sbjct: 534 QPPKCLVHGEPAKEFTVHKPGPNKGKNFFICSRPVGPGYDKGKAERLREEVDHQYRCNFF 593
Query: 510 KWAFSKSKQ 518
KW+ K+
Sbjct: 594 KWSSEVKKE 602
>gi|148227204|ref|NP_001086779.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
laevis]
gi|50415222|gb|AAH77433.1| Apex2-prov protein [Xenopus laevis]
Length = 517
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 125/273 (45%), Gaps = 60/273 (21%)
Query: 5 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 55
E F ++EL +D EGR V+T H + NVY PRAD E R +KL+F+H
Sbjct: 103 EQFLEEELQSLDQEGRAVLTQHRILNCEDKEETLTVINVYCPRADPEKPERKTYKLRFYH 162
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE----- 108
+LQ R E +L G + ++GD+N + +D CD F +N R W L +
Sbjct: 163 LLQTRAEAILQNGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPIPSQ 222
Query: 109 ------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
G F+D FR HP ++ A+TCW S +GA Q NYGTRID+IL
Sbjct: 223 KGDSETVMPPSAGSGLFYDSFRYFHPTQKNAFTCWCSASGARQTNYGTRIDYIL------ 276
Query: 157 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216
+L F+ D +I +EGSDH PV + P
Sbjct: 277 -GNRELVESEFL-------DSVI-----------------MPEVEGSDHCPVKAFMKCQP 311
Query: 217 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
I + P L ++YLP G QQ L+ L+K+E
Sbjct: 312 -IAANKCPPLCTKYLPEFAGRQQKLLQFLVKKE 343
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 516
P CKGH EPCV R VKK GP GR+F+VCAR EG +SNP+A C +F W K+
Sbjct: 461 PNCKGHSEPCVLRTVKKAGPNCGRQFYVCARPEGHSSNPQARCNFFLWLTKKA 513
>gi|395546227|ref|XP_003774991.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Sarcophilus
harrisii]
Length = 548
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 123/258 (47%), Gaps = 48/258 (18%)
Query: 5 EDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFFH 55
E+F++DEL +DSEGR V+T H GH + NVY P AD + R+ +KL+F+
Sbjct: 103 EEFTEDELRALDSEGRAVLTQHQIRTSDGHEKTLTIINVYCPHADPDKPERLTYKLRFYR 162
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---KNEFRIWFRSMLVESGGS 112
+LQ R E LL G + ++GD+N + +D CD PD A +N R W L G
Sbjct: 163 LLQLRAEALLRTGSHVIILGDVNTSHQPLDHCDP-PDLACFEENPGRQWLTQFLWRPDGE 221
Query: 113 ---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
F D FR HP + A+TCW + TGA NYGTR+D+IL
Sbjct: 222 NGLFVDSFRHFHPTKVGAFTCWSTATGARLTNYGTRLDYILG------------------ 263
Query: 170 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 229
+ +L +++ + +EGSDH PV L IP P L +R
Sbjct: 264 ---DRALVLGEFE----------DSFLMPEVEGSDHCPVGATL-RAELIPAPRCPPLCTR 309
Query: 230 YLPIIRGVQQTLVSVLMK 247
YLP G QQ L L+K
Sbjct: 310 YLPEFAGRQQKLSRFLVK 327
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLCKGH EPCV R V+K GP FGR+F+VC+R G + NP A C +F W
Sbjct: 427 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHSGNPVARCDFFLW 474
>gi|393221878|gb|EJD07362.1| DNase I-like protein [Fomitiporia mediterranea MF3/22]
Length = 669
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 153/579 (26%), Positives = 216/579 (37%), Gaps = 139/579 (24%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQGR 69
+L+++D EGR ++ D G F+L NVY P S+ R+ +K+ F +LQ+R L R
Sbjct: 135 DLIELDKEGRALMLDFGLFVLINVYCPNETSD--ARLPYKMNFHLLLQERVRLLTEVDKR 192
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPER 124
+ VVGD+N+ A ID CD K EF R WF L G +D+ R+ PER
Sbjct: 193 EVIVVGDINVCAAPIDHCDGELPSNKEEFWVHPARKWFHEWL-HPIGPMYDIVRNCWPER 251
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KH-DLQSHNFVTCHVNECDILIDYK 182
+ YTCW A NYGTRID+ L L KH D+Q+H
Sbjct: 252 KGMYTCWNQKIDARTTNYGTRIDYFLLTKGLLPWFKHGDIQAH----------------- 294
Query: 183 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--------GEVPEIP--------QHSTPSL 226
++GSDH PVY+ L G+ + + P L
Sbjct: 295 -----------------VKGSDHCPVYIDLHDQITDEGGDTLYLKDMLKMNGEKRDPPRL 337
Query: 227 ASRYLPIIRGVQQTLVSVLMKREVA----------------KQGKSCKFSGSLPAESNST 270
A+++ G QQ L S K+ GKS + S PA ++S
Sbjct: 338 ATKFWVEYSGKQQVLSSFFGKKAATASESDLAIASTVSIRPASGKSSTVA-STPATTDSG 396
Query: 271 GDTEDCSENVDRS--LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD---------S 319
E S + ++ +Y I S TI + + S
Sbjct: 397 KTREIESREISKADESKSYNQEAIFPPPVPEEKIARSSTSSNLTIISSTNDPHSNGSLSS 456
Query: 320 ANVASHSTI------TQGSSNHISPFHVDRARK--------KAKKSQLGQLSLKSFFHKR 365
A VA+ + Q SN+ P + K K K+S Q+ L SFF
Sbjct: 457 ATVAAEAAPPLKRKKMQADSNY--PAQAPKKSKKGNSAPKLKGKESTTAQMKLSSFFSGP 514
Query: 366 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSS 425
++ + S D +EE P S I V D + + V S
Sbjct: 515 TS----------------SQSQADVDDKEEESPIRSQKSEVIDV-DALLNDSDALTVQSE 557
Query: 426 VCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF 485
V G +K N+ W + +E P C H E C V KPGP
Sbjct: 558 VQLSPPVTVPGSSRTEKGNNSHT---WSTLFARIEP--PKCVVHGEACREFTVNKPGPNK 612
Query: 486 GRRFFVCARAEGPA------------SNPEANCGYFKWA 512
G+ FF+CAR GP N + C +FKW+
Sbjct: 613 GKAFFICARPVGPGYDAGKDRRLREEVNSQYRCNFFKWS 651
>gi|167555152|ref|NP_001107928.1| uncharacterized protein LOC797209 [Danio rerio]
gi|160773435|gb|AAI55114.1| LOC797209 protein [Danio rerio]
Length = 558
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 135/300 (45%), Gaps = 73/300 (24%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHV 56
+ + +E L +D+EGR VI+ H HFI + NVY PRAD + R +FKLQF+ +
Sbjct: 104 ELTSEEFLALDNEGRAVISQH-HFIGQDGPQKLTVINVYCPRADPDKPERKEFKLQFYRL 162
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE---- 108
LQ R E +L G + ++GD+N + ID CD PD F N R W L E
Sbjct: 163 LQCRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAEN 220
Query: 109 ------------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
SGG F D FR HP+R A TCW + TGA Q NYGTRID+I
Sbjct: 221 SENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNALTCWSTLTGARQTNYGTRIDYI- 279
Query: 151 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 210
+H+ V DI+ + +EGSDH PV+
Sbjct: 280 -----------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWA 309
Query: 211 CLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 269
L + P+ P + +R++P G QQ L L+K KQ S SLP ++
Sbjct: 310 QLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLVKIP-EKQNISNGSEKSLPGSQDA 366
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV 554
>gi|146399949|gb|ABQ28691.1| apn1 [Neosartorya fischeri]
Length = 581
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 138/554 (24%), Positives = 218/554 (39%), Gaps = 100/554 (18%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E S+ E+ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 75 IEQLSELEVDAATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDNFRHSFIDLMDARI 132
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG- 110
L+ G+R+FV GDLNIA ID A K +EF R F +L +
Sbjct: 133 RNLVAMGKRVFVTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPARRVFNQLLSDGRV 192
Query: 111 ----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
FD+ RS HP RR YTCW A NYG+RID++LC+
Sbjct: 193 IGQRDEGREIPVLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRIDYVLCS-------L 245
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 220
D+Q F ++ E L GSDH PVY +V + +
Sbjct: 246 DMQDW-FSDSNIQEG------------------------LMGSDHCPVYAVFKDVVRLGE 280
Query: 221 HSTPSLASRYLPII----RGVQQTLVSVLMK---REVAKQGKSCKFSGSLPAESNSTGDT 273
L P + + Q+ L+ R + + K +S++ T
Sbjct: 281 KEVSILDIMNPPGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRSIKDMFSRKSSTNAQT 340
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCRDSANVASHSTITQGS 332
+ R + + V S+++Q + + T+TI+ R +
Sbjct: 341 PTTNPPALRRFASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVRKRSQ----------K 390
Query: 333 SNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 388
S P V R++ + + S GQ +LK FF +++ + +I S +V+ T
Sbjct: 391 SETGFPVSVKRSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--QATIARDSASVSTVPT 448
Query: 389 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG------VNSSVCSHDQDEKKGKRFLDK 442
+ S + P + + + L G ++ S D+ K
Sbjct: 449 NQSAAFPRKPTPVTEPTALEAIPTAPAGEALPGEQPNSATTTTPASSQNDDTVHDPIASK 508
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
E +W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N
Sbjct: 509 E-------DWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNK 559
Query: 503 EAN----CGYFKWA 512
E C F WA
Sbjct: 560 EKGTQWRCPTFIWA 573
>gi|119493288|ref|XP_001263834.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
gi|119411994|gb|EAW21937.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
Length = 622
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 138/554 (24%), Positives = 218/554 (39%), Gaps = 100/554 (18%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E S+ E+ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 116 IEQLSELEVDAATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDNFRHSFIDLMDARI 173
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG- 110
L+ G+R+FV GDLNIA ID A K +EF R F +L +
Sbjct: 174 RNLVAMGKRVFVTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPARRVFNQLLSDGRV 233
Query: 111 ----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
FD+ RS HP RR YTCW A NYG+RID++LC+
Sbjct: 234 IGQRDEGREIPVLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRIDYVLCS-------L 286
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 220
D+Q F ++ E L GSDH PVY +V + +
Sbjct: 287 DMQDW-FSDSNIQEG------------------------LMGSDHCPVYAVFKDVVRLGE 321
Query: 221 HSTPSLASRYLPII----RGVQQTLVSVLMK---REVAKQGKSCKFSGSLPAESNSTGDT 273
L P + + Q+ L+ R + + K +S++ T
Sbjct: 322 KEVSILDIMNPPGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRSIKDMFSRKSSTNAQT 381
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCRDSANVASHSTITQGS 332
+ R + + V S+++Q + + T+TI+ R +
Sbjct: 382 PTTNPPALRRFASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVRKRSQ----------K 431
Query: 333 SNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 388
S P V R++ + + S GQ +LK FF +++ + +I S +V+ T
Sbjct: 432 SETGFPVSVKRSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--QATIARDSASVSTVPT 489
Query: 389 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG------VNSSVCSHDQDEKKGKRFLDK 442
+ S + P + + + L G ++ S D+ K
Sbjct: 490 NQSAAFPRKPTPVTEPTALEAIPTAPAGEALPGEQPNSATTTTPASSQNDDTVHDPIASK 549
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
E +W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N
Sbjct: 550 E-------DWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNK 600
Query: 503 EAN----CGYFKWA 512
E C F WA
Sbjct: 601 EKGTQWRCPTFIWA 614
>gi|242266565|gb|ACS91130.1| APN2 [Microsporum gypseum]
Length = 596
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 137/546 (25%), Positives = 218/546 (39%), Gaps = 107/546 (19%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + +DSEGRC+I + F+L VY P + D R F+L F +L+ R
Sbjct: 116 VEQMEELSEVDPATLDSEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEAR 173
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML---- 106
L+ G+R+ + GDLNI+PAAID A KN E+ R F ++
Sbjct: 174 VRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVG 233
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+E+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 234 STEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS------- 286
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
D++ FV ++ E L GSDH PVY + +
Sbjct: 287 DDIRPW-FVESNIQEG------------------------LMGSDHCPVYASISD----- 316
Query: 220 QHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
T R + I+ + T +++ + + SG L E + + +D
Sbjct: 317 ---TVPFEGRNVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFR 373
Query: 279 NVDRS-LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV-----ASHSTITQG- 331
N S N+ + I + +EN S + SHS Q
Sbjct: 374 NHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALENKSPSVTMNPPSKRSHSKAAQTP 433
Query: 332 SSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDT 390
S + P ++R +S GQ +L FF +R++ + + N+ T +
Sbjct: 434 PSKRLKP----KSRPAGARSN-GQQTLAGFFKSERTSRAVSEENATTSS----------- 477
Query: 391 SLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVAL 449
+ P+ ++ +T S E G + + S D F E
Sbjct: 478 -----DSPQEAQTEARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE------ 526
Query: 450 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN---- 505
W ++ + +P C+GH E C++ V KKPG GR F++C+R GP+ + E+
Sbjct: 527 -SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWR 583
Query: 506 CGYFKW 511
C F W
Sbjct: 584 CPTFIW 589
>gi|354476041|ref|XP_003500233.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus
griseus]
gi|344246210|gb|EGW02314.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR V+T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRAVLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLSFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDAG F ++ R W +L G
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDAGSMECFEEDPGRKWMDGLLSNPGME 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP++ +A+TCW +GA NYG+R+D++L
Sbjct: 235 AGSQTGLFMDSYRCFHPKQEKAFTCWSVVSGARHLNYGSRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GDRTLVIDTFQ---------TSFLLPEVMGSDHCPVGAVL-NVSCMPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVPLE 346
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 433 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 492
E+K K K+ V W+ + + +PLC GH+EPCV R VKK GP GR F++C
Sbjct: 436 EEKAKVSEAKDEKEVRTSFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNLGRHFYMC 494
Query: 493 ARAEGPASNPEANCGYFKWA 512
AR GP S+P + C +F W+
Sbjct: 495 ARPRGPPSDPSSRCNFFLWS 514
>gi|302664446|ref|XP_003023853.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
gi|291187871|gb|EFE43235.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
Length = 588
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 149/557 (26%), Positives = 233/557 (41%), Gaps = 107/557 (19%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 88 IEQMEELSEVDPITVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 145
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSML--- 106
L+ G+R+ + GDLN ID A K E+ RI+ R +
Sbjct: 146 VRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNRLVRPVG 205
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
ES D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 206 STGDTHDTESPPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS------- 258
Query: 160 HDLQSHNFVTCHVNECDIL-IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
+++S FV ++ E I+ + + +P + + +GSDH PVY +G+ +
Sbjct: 259 DNIRSW-FVESNIQEGLIVCVKFGLI----SPSFNNLLIPNEQGSDHCPVYASIGD--RV 311
Query: 219 PQHSTPSLASRYLPIIRGVQQTLVSVLMKR----EVAKQGKSCK-----FSGSLPAESNS 269
P G ++ ++ + + +Q +S K SG L E +
Sbjct: 312 P--------------FDGKDVHILDIMNPKGTFDDGVEQPRSNKITPLALSGRLIPEFDR 357
Query: 270 TGDTEDCSENVDRSLNN-----YCDSGILQGVYC-SSSNQESEGEFTKTIENCRDSANVA 323
+ +D N S NN + L G ++Q + KT + A
Sbjct: 358 RRNIKDMFRNHSLSRNNSEVKMSTTTDTLAGSEIPGPASQTKSAQENKTARVTMNHAPKR 417
Query: 324 SHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN---VSHDDNNSITDT 379
SHST Q S + P + R +S GQ +L FF VS ++ + +D+
Sbjct: 418 SHSTGVQAPPSKRLKP----KGRPSGARSN-GQQTLVGFFKSERTSRAVSEENATASSDS 472
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 439
V T S E+ + +++ +P T + S NS V S E K F
Sbjct: 473 PQEAPAEVKITPAS--ELASTAQNNDSVP-TAVTTSPD-----NSVVPSCSPTESWSKVF 524
Query: 440 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 499
K +P C+GH E C++ V KKPG GR F++C R GP+
Sbjct: 525 TRK-------------------PVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPS 565
Query: 500 SNPEAN----CGYFKWA 512
+ E+ C F W+
Sbjct: 566 GDKESGTPWRCPTFIWS 582
>gi|126342732|ref|XP_001367276.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Monodelphis domestica]
Length = 482
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 119/257 (46%), Gaps = 46/257 (17%)
Query: 5 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 55
E+F++DEL +DSEGR V+T H + NVY P AD E R+ +KL+F+
Sbjct: 103 EEFTEDELRSLDSEGRAVLTQHQIRTSDGQEKTLTIMNVYCPHADPEKPERLTYKLRFYR 162
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVES---G 110
+LQ R E LL G + ++GD+N + +D CD F +N R W L +
Sbjct: 163 LLQLRAEALLQAGSHVIILGDVNTSHRPLDHCDPADLECFEENPGRQWLTEFLWQPDRDS 222
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 170
G F D FR HP A+TCW + TGA NYGTR+D+IL
Sbjct: 223 GLFVDSFRHFHPTTVGAFTCWSTATGARLTNYGTRLDYILG------------------- 263
Query: 171 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 230
+ +L +++ + +EGSDH P+ L IP P L +RY
Sbjct: 264 --DRALVLEEFE----------DSFLMPEVEGSDHCPIGATL-RTELIPAPRCPPLCTRY 310
Query: 231 LPIIRGVQQTLVSVLMK 247
LP G QQ L L+K
Sbjct: 311 LPEFAGRQQKLSRFLIK 327
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 516
PLCKGH EPCV R V+K GP FGR+F+VC+R G SNP A C +F W K+
Sbjct: 426 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHISNPAARCDFFLWVSGKT 478
>gi|452825432|gb|EME32429.1| AP endonuclease 2 [Galdieria sulphuraria]
Length = 510
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 155/350 (44%), Gaps = 57/350 (16%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L K+D EGRCVI + FILFNVY P S++T ++K F L KR + +L G+ +
Sbjct: 134 LTKLDKEGRCVIVEFPFFILFNVYVPFDSSDET--FEYKYIFIERLLKRIKMVLEGGKNV 191
Query: 72 FVVGDLNIAPAAIDRCDA---------GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
V GD N A ID CD G F + R F +++ S G DVFR HP
Sbjct: 192 VVCGDFNCARERIDHCDPEGIFQNKPRGSLFESDSCRQLF-NVICSSEGPLVDVFRYFHP 250
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
ER +AYTCW + TGA + N+GTRID+I L + FV + CDI D
Sbjct: 251 ERLDAYTCWNNQTGARKTNFGTRIDYI------------LANRAFVENFITNCDIFND-- 296
Query: 183 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS-----TPSLASRYLPIIRGV 237
+ GSDH PVY+ + + S P ++ P + G
Sbjct: 297 -----------------IYGSDHCPVYIEFRSIVSLSAESLHVERLPPFCCQHFPDLLGS 339
Query: 238 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC-SENVDRSLNNYCDSGILQGV 296
QQ+L ++ +++ KS K P +T C + D S + S +G
Sbjct: 340 QQSLKDMM---KISIHDKSNKIVEMRPHFVEATAFNRTCITMKSDTSTSEEGHSQ--EGK 394
Query: 297 YCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 346
Y + ++ F K+ D+ + +S+ GS N FHV + +K
Sbjct: 395 YDDTIRLPTKRNFEKSTSIEMDTFSNREYSSTVSGSEN---CFHVTKYQK 441
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510
+WR++ ++ +PLC GH EPC+ R VKK G GR+F+VC R G E C +F
Sbjct: 445 DWRKLFHNLQ-KVPLCSGHNEPCLLRTVKKKGANLGRKFYVCGRPIGKGV--EGRCNFFL 501
Query: 511 W 511
W
Sbjct: 502 W 502
>gi|238505976|ref|XP_002384190.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
gi|220690304|gb|EED46654.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
Length = 630
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 143/544 (26%), Positives = 212/544 (38%), Gaps = 111/544 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 147 LDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 204
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGG------------S 112
GDLNI+ ID A K +EF R F + LV SG +
Sbjct: 205 GDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQPA 263
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 264 LFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC--- 311
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VPEIPQHSTPSL----- 226
E DI L GSDH PVY + V + + P +
Sbjct: 312 -ESDI-------------------QEGLMGSDHCPVYAIFKDSVNMLDIMNPPGIFDNGE 351
Query: 227 --ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK---FSGSLPAESNSTGDTEDCSENVD 281
++ L+ KR K S K S LP S T
Sbjct: 352 RRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKPDMSSQKLPTTSALTA---------- 401
Query: 282 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 341
C S I + VY + + S G ++ S T+ + S P V
Sbjct: 402 ------CAS-IREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSEKSDPPPSV 452
Query: 342 DRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 397
R++ +++ Q +LK FF + VS + I++T + V S +
Sbjct: 453 KRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQAMERSSGPL 507
Query: 398 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-----VALLEW 452
P S S D + +H V ++ S+ F+ + V+ +W
Sbjct: 508 PASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVIDPIVSKEDW 563
Query: 453 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGY 508
++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 564 SKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCAT 621
Query: 509 FKWA 512
F WA
Sbjct: 622 FIWA 625
>gi|67537132|ref|XP_662340.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
gi|40741588|gb|EAA60778.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
Length = 554
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 139/562 (24%), Positives = 209/562 (37%), Gaps = 131/562 (23%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E SK +L +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 63 IEQLSKLKLDAETLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARV 120
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG- 110
L+ G+R+FV GD+NI+ ID A DF R F +L++
Sbjct: 121 RNLVALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKV 180
Query: 111 ----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 181 VGDRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS-------- 232
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 220
+D K W + + L GSDH PVY ++
Sbjct: 233 ------------------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL----- 263
Query: 221 HSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTG 271
+P+ G Q ++ ++ V K G+ + KF SG L E +
Sbjct: 264 ----------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRR 312
Query: 272 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHS 326
+D + S Q + SN+ES +T N D+ S+
Sbjct: 313 SIKDMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSND 369
Query: 327 TITQGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD- 378
T+ +G+ + P + A + +GQ +LK FF + + DN D
Sbjct: 370 TLQKGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDE 429
Query: 379 ----TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK 434
+S D + E+ ++ K P E G V S
Sbjct: 430 GQGPAEFPFISSQQDVT---EQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ---- 482
Query: 435 KGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
+W ++ + P C H E C++ KKPGP FGR F++C R
Sbjct: 483 ----------------DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPR 524
Query: 495 AEGPASNPEAN----CGYFKWA 512
GP+ N E C F WA
Sbjct: 525 PLGPSGNKEKGTEWRCSTFIWA 546
>gi|259482425|tpe|CBF76897.1| TPA: DNA lyase Apn2 (AFU_orthologue; AFUA_3G06180) [Aspergillus
nidulans FGSC A4]
Length = 612
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 137/559 (24%), Positives = 207/559 (37%), Gaps = 125/559 (22%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E SK +L +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 121 IEQLSKLKLDAETLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARV 178
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG- 110
L+ G+R+FV GD+NI+ ID A DF R F +L++
Sbjct: 179 RNLVALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKV 238
Query: 111 ----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 239 VGDRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS-------- 290
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 220
+D K W + + L GSDH PVY ++
Sbjct: 291 ------------------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL----- 321
Query: 221 HSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTG 271
+P+ G Q ++ ++ V K G+ + KF SG L E +
Sbjct: 322 ----------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRR 370
Query: 272 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHS 326
+D + S Q + SN+ES +T N D+ S+
Sbjct: 371 SIKDMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSND 427
Query: 327 TITQGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
T+ +G+ + P + A + +GQ +LK FF + + DN D
Sbjct: 428 TLQKGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDE 487
Query: 380 SLNVNN--SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGK 437
++ E+ ++ K P E G V S
Sbjct: 488 GQGPAEFPFISSQQDVTEQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ------- 540
Query: 438 RFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 497
+W ++ + P C H E C++ KKPGP FGR F++C R G
Sbjct: 541 -------------DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPRPLG 585
Query: 498 PASNPEAN----CGYFKWA 512
P+ N E C F WA
Sbjct: 586 PSGNKEKGTEWRCSTFIWA 604
>gi|242266571|gb|ACS91135.1| APN2 [Microsporum gypseum]
Length = 596
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 135/549 (24%), Positives = 221/549 (40%), Gaps = 113/549 (20%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + +DSEGRC+I + F+L VY P + D R F+L F +L+ R
Sbjct: 116 VEQMEELSEVDPTTLDSEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEAR 173
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML---- 106
L+ G+R+ + GDLNI+PAAID A KN E+ R F ++
Sbjct: 174 VRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVG 233
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+E+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 234 STEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS------- 286
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
D++ FV ++ E L GSDH PVY + +
Sbjct: 287 DDIRPW-FVESNIQEG------------------------LMGSDHCPVYASISD----- 316
Query: 220 QHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
T R + I+ + T +++ + + SG L E + + +D
Sbjct: 317 ---TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFR 373
Query: 279 N---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 329
N + S+ +G+ ++ E +K+ + + SHS
Sbjct: 374 NHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAA 430
Query: 330 QG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSV 387
Q S + P ++R +S GQ +L FF +R++ + + N+ T +
Sbjct: 431 QTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSERTSRAVSEENATTSS-------- 477
Query: 388 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNN 446
+ P+ ++ +T S E G + + S D F E
Sbjct: 478 --------DSPQEAQTEARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE--- 526
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
W ++ + +P C+GH E C++ V KKPG GR F++C+R GP+ + E+
Sbjct: 527 ----SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGT 580
Query: 506 ---CGYFKW 511
C F W
Sbjct: 581 PWRCPTFIW 589
>gi|242266576|gb|ACS91139.1| APN2 [Microsporum gypseum]
Length = 596
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 135/549 (24%), Positives = 221/549 (40%), Gaps = 113/549 (20%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + +DSEGRC+I + F+L VY P + D R F+L F +L+ R
Sbjct: 116 VEQMEELSEVDPTTLDSEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEAR 173
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML---- 106
L+ G+R+ + GDLNI+PAAID A KN E+ R F ++
Sbjct: 174 VRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVG 233
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+E+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 234 STEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS------- 286
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
D++ FV ++ E L GSDH PVY + +
Sbjct: 287 DDIRPW-FVESNIQEG------------------------LMGSDHCPVYASISD----- 316
Query: 220 QHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
T R + I+ + T +++ + + SG L E + + +D
Sbjct: 317 ---TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFR 373
Query: 279 N---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 329
N + S+ +G+ ++ E +K+ + + SHS
Sbjct: 374 NHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAA 430
Query: 330 QG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSV 387
Q S + P ++R +S GQ +L FF +R++ + + N+ T +
Sbjct: 431 QTPPSKRLKP----KSRPTGARSN-GQQTLAGFFKSERTSRAVSEENATTSS-------- 477
Query: 388 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNN 446
+ P+ ++ +T S E G + + S D F E
Sbjct: 478 --------DSPQEAQTEARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE--- 526
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
W ++ + +P C+GH E C++ V KKPG GR F++C+R GP+ + E+
Sbjct: 527 ----SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGT 580
Query: 506 ---CGYFKW 511
C F W
Sbjct: 581 PWRCPTFIW 589
>gi|83773202|dbj|BAE63329.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 636
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 139/550 (25%), Positives = 211/550 (38%), Gaps = 116/550 (21%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 146 LDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 203
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGG------------S 112
GDLNI+ ID A K +EF R F + LV SG +
Sbjct: 204 GDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQPA 262
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 263 LFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC--- 310
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
E DI L GSDH PVY +
Sbjct: 311 -ESDI-------------------QEGLMGSDHCPVYAIFKDS----------------V 334
Query: 233 IIRGVQQTLVSVLMKREVAKQGKS---------CKFSGSLPAESNSTGDTEDC-SENVDR 282
+ G Q ++ ++ + G+ SG L E + +D S D
Sbjct: 335 CLNGQQVNMLDIMNPPGIFDNGERRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKPDM 394
Query: 283 SLNNYCDSGILQG-------VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 335
S + L VY + + S G ++ S T+ + S
Sbjct: 395 SSQKLPTTSALTACASIREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSEKS 452
Query: 336 ISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 391
P V R++ +++ Q +LK FF + VS + I++T + V
Sbjct: 453 DPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQAME 507
Query: 392 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN----- 446
S +P S S D + +H V ++ S+ F+ +
Sbjct: 508 RSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVIDPI 563
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
V+ +W ++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E
Sbjct: 564 VSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGT 621
Query: 506 ---CGYFKWA 512
C F WA
Sbjct: 622 QWRCATFIWA 631
>gi|393240732|gb|EJD48257.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 613
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 115/257 (44%), Gaps = 61/257 (23%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++L++D EGR ++ D G F+L N+Y P SE RI FK F +L +R L +GR
Sbjct: 136 DVLELDGEGRALVLDFGVFVLVNLYCPAETSE--ARIPFKANFHRLLGERLRILRTEGRE 193
Query: 71 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
I VVGD+NI +D CD F + E R+W R +L E G F DV R HP R+
Sbjct: 194 IIVVGDINICSTPLDHCDFTLPSTHETFFERETRVWMRDLL-EPVGPFVDVVRRFHPGRK 252
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
YTCW + A + NYGTRID+ILC
Sbjct: 253 GMYTCWNTRINARESNYGTRIDYILCTS-------------------------------- 280
Query: 186 PGNAPRWKGG-MSTRLEGSDHAPVYM------------------CLGEVPEIPQHSTPSL 226
G P KGG + ++GSDH PVY+ + ++PE P P L
Sbjct: 281 -GLVPWMKGGDIQASVKGSDHCPVYVDLHDEIVGEDRNVVKLRDAMKQIPE-PHAPPPRL 338
Query: 227 ASRYLPIIRGVQQTLVS 243
A+ Y + Q L S
Sbjct: 339 AACYWDVFSTRQTVLGS 355
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 505
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 506 CGYFKWA 512
C YFKW
Sbjct: 583 CDYFKWG 589
>gi|115402641|ref|XP_001217397.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
gi|114189243|gb|EAU30943.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
Length = 592
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 138/558 (24%), Positives = 213/558 (38%), Gaps = 114/558 (20%)
Query: 3 GLEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E S+ EL +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 93 AIEQLSQLELDAATLDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQSFLDLMDTR 150
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG 110
L+ G+R+ V GDLNI+ ID+ A DF R F +L E
Sbjct: 151 LRNLVAMGKRVVVTGDLNISAREIDQAPAAEAIRKGTLTEDDFVSAPARRLFNQLLFEGK 210
Query: 111 -----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
D+ R HP+R+ YTCW A NYG+RID++LC+
Sbjct: 211 VLGQRDEGREQPVLHDICRMFHPDRKGMYTCWEQRINARPGNYGSRIDYVLCS------- 263
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
+D + W + + L GSDH PVY +V +P
Sbjct: 264 -------------------LDMRDWIEDS------NIQEGLMGSDHCPVYAIFKDV--VP 296
Query: 220 QHSTPSLASRYL-----------------PIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
P + +I L+ KR K S K S +
Sbjct: 297 LDGKPVNIRDIMNPPGVFANGERKQEYTTKLILPTSGRLIPEFDKRRSIKDMFSRKPSAT 356
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
A +T TE SG Q + E + T T + +
Sbjct: 357 --ATKGNTIATEPSP------------SGPQQANAANVCPPEEKPALTPTPSGPQPAQGG 402
Query: 323 ASHSTITQGSSNHISPFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDN---NSITD 378
A + S I P ++ + L GQ SLK FF + +V+ D + +D
Sbjct: 403 ARKRS---QRSEPIPPVKRSKSTPTPIQGALGGQKSLKGFFKPKVSVTEQDKVGPSRGSD 459
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKR 438
+ + + + +TS ++ + +NKI S + +S ++ +
Sbjct: 460 SPGLIPDPLPETSSNEPDNSADAQSANKIEGNPDSPRKGQPAAPSS---------QENET 510
Query: 439 FLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
F+D V+ +W ++ + + P C+GH+EPC++ KKPG GR F++C R GP
Sbjct: 511 FIDP---IVSKEDWSKLFS-KKKAAPKCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGP 566
Query: 499 ASNPEAN----CGYFKWA 512
+ N E C F WA
Sbjct: 567 SGNKEKGTQWRCSTFIWA 584
>gi|315047122|ref|XP_003172936.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
gi|311343322|gb|EFR02525.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
Length = 604
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 135/549 (24%), Positives = 221/549 (40%), Gaps = 113/549 (20%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + +DSEGRC+I + F+L VY P + D R F+L F +L+ R
Sbjct: 124 VEQMEELSEVDPTTLDSEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEAR 181
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML---- 106
L+ G+R+ + GDLNI+PAAID A KN E+ R F ++
Sbjct: 182 VRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVG 241
Query: 107 -------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+E+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 242 STEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS------- 294
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 219
D++ FV ++ E L GSDH PVY + +
Sbjct: 295 DDIRPW-FVESNIQEG------------------------LMGSDHCPVYASISD----- 324
Query: 220 QHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
T R + I+ + T +++ + + SG L E + + +D
Sbjct: 325 ---TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFR 381
Query: 279 N---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 329
N + S+ +G+ ++ E +K+ + + SHS
Sbjct: 382 NHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAA 438
Query: 330 QG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSV 387
Q S + P ++R +S GQ +L FF +R++ + + N+ T +
Sbjct: 439 QTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSERTSRAVSEENATTSS-------- 485
Query: 388 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNN 446
+ P+ ++ +T S E G + + S D F E
Sbjct: 486 --------DSPQEAQTEARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE--- 534
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
W ++ + +P C+GH E C++ V KKPG GR F++C+R GP+ + E+
Sbjct: 535 ----SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGT 588
Query: 506 ---CGYFKW 511
C F W
Sbjct: 589 PWRCPTFIW 597
>gi|403415135|emb|CCM01835.1| predicted protein [Fibroporia radiculosa]
Length = 576
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 132/537 (24%), Positives = 211/537 (39%), Gaps = 110/537 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFV 73
+D EGR ++ D G F+L NVY P S+ R+ FK+ F +LQ+R L+ + R + V
Sbjct: 89 LDFEGRTLVLDFGLFVLINVYCPAETSD--ARLPFKMNFHLLLQERVRKLIEEEHREVIV 146
Query: 74 VGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+GD+NIA A +D D F + R WFR L G DV RS P+R+ +
Sbjct: 147 LGDINIAAAPLDHGDGHLPSNVATFWDHPARQWFRQWL-NPNGPMIDVIRSFWPDRKGLF 205
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA-GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
TCW A + NYG RID++L G KH
Sbjct: 206 TCWNMKLQARETNYGARIDYVLITRGLLPWIKH--------------------------- 238
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL--------GEVPEIPQ-------HSTPSLASRYLP 232
G + L+GSDH P+++ L GE+ ++ P L++++
Sbjct: 239 ------GDIQASLKGSDHCPIFVDLHDEITLESGELIKLSDAMKQKEGMQAPRLSAKFWE 292
Query: 233 IIRGVQQTLVSVLMKREVAK----QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 288
G Q L + KR ++ + FS LP + + ++
Sbjct: 293 EFSGKQTMLSTFFGKRNSSQLQTFDETTANFSVPLPRSPQFSSSSVPLTD---------- 342
Query: 289 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 348
+G+ S+SN + T+TI N + +AS + S + K
Sbjct: 343 -----EGMSISTSNSNAS---TETIRNSKPLRLIASAPLKRKPSEKSFT-----SGSTKK 389
Query: 349 KKSQLGQLSLKSFFHKRS-NVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKI 407
+K++ GQ + SFF K + + S + D + + ++V S P S H +
Sbjct: 390 RKAEAGQSKIASFFSKPTISKSQPKEVIVLDEADSFPDAVPSCS-PPSTFPSSDHQLD-- 446
Query: 408 PVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 467
DY + EL + + + + N + W + ++ P C
Sbjct: 447 --ADYRLAC-ELSATQVDLITQSEASQPNA----STSQNTSKNAWSDLFAPLQP--PRCV 497
Query: 468 GHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKWA 512
H EP V K GP G++F++C+R GP N + C +FKWA
Sbjct: 498 THGEPAKLYTVNKQGPNKGKKFYICSRPVGPGYDKGKGERPRDEVNHQYRCNFFKWA 554
>gi|141447778|gb|ABO87600.1| DNA lyase [Coccidioides immitis]
Length = 606
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 208/540 (38%), Gaps = 95/540 (17%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
E LE D + IDSEGRCVI + F+L VY P + D R F+ F +VL R
Sbjct: 125 EQLELLPIDPV-TIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVFRAAFLNVLDMRV 181
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFRIWFRSMLVESGG 111
L G+R+ ++GD+NI+ ID +F + R F + LV GG
Sbjct: 182 RNLTAMGKRVVLMGDMNISREVIDSAHIIEAIRKGKTTETEFLSSPSRRLF-NQLVGGGG 240
Query: 112 S----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ DV R HP+R YTCW A NYG RID++LC+
Sbjct: 241 ARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYVLCS--------- 291
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+D + W + + L GSDH PVY + +
Sbjct: 292 -----------------VDMEDWFT------ESNIQEGLMGSDHCPVYGIINDTVSCRNM 328
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVD 281
T L P G+ + + R+ S SG L E + +D +
Sbjct: 329 DTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHRRRSLKDMFQTAS 380
Query: 282 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 341
+ + + L S + ++ ++++ + N S
Sbjct: 381 GASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPKRALENWTSLSPA 440
Query: 342 DRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 395
RA+K + GQ +L SF + R + ++ S LNV + + + + +
Sbjct: 441 KRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNVPDEIKEHTGNVR 497
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 455
PES + N S S++ + ++ + G+R + + + A L +R
Sbjct: 498 ASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSAKESWAKLFTKR- 545
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
+ P C+GH EPC+ V KKPGP GR F++C R GP+ N E C F W
Sbjct: 546 ------APPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKEIGTPWRCSTFIW 599
>gi|391340727|ref|XP_003744688.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Metaseiulus occidentalis]
Length = 453
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 117/252 (46%), Gaps = 43/252 (17%)
Query: 7 FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
S+ E+L +DSEGR ++T ++FN+Y PR D + R QFK F +L
Sbjct: 112 LSQKEILNVDSEGRTLVTSFNFLDGAGQTKQLLVFNLYCPRNDPDRPERAQFKYNFNAML 171
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF-DV 116
+ + L+ +G + + GD+NI+ ID CD G DF ++ RIW ML + +F DV
Sbjct: 172 EHQAVCLVKKGFHVILTGDMNISHKRIDNCDPGEDFEESPARIWLTKMLDQQNDVYFVDV 231
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 176
FR HP+ +E YTCW S A N+GTRID+I+C L + CD
Sbjct: 232 FRHMHPDAKEQYTCWNSQKSARLTNFGTRIDYIICDSKLLE-------------YFESCD 278
Query: 177 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRG 236
I D + GSDH PV L ++ I +R P G
Sbjct: 279 IHPD-------------------VMGSDHCPVSAVL-KLNLISNEKLIRKCTRNWPEFSG 318
Query: 237 VQQTLVSVLMKR 248
Q +L S L+K+
Sbjct: 319 KQTSLSSFLVKK 330
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLC GH E V R+VKK G G+RF+ CAR EG + N EA C +F W
Sbjct: 405 PLCSGHGELSVLRIVKKDGINKGKRFYCCARPEGRSDNKEARCSFFVW 452
>gi|255089412|ref|XP_002506628.1| predicted protein [Micromonas sp. RCC299]
gi|226521900|gb|ACO67886.1| predicted protein [Micromonas sp. RCC299]
Length = 583
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 106/222 (47%), Gaps = 46/222 (20%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
E F + +L++DSEGRCV+ D G F+LFNVY P S+D R +FKL F ++ R+ L
Sbjct: 175 EAFDRARMLELDSEGRCVLVDLGAFVLFNVYVPSLSSDDEDRERFKLDFLVAVEIRYRAL 234
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-------FAKNEFRIWFRSMLVESGGS----- 112
L GRR+ + GD N++ ID A + +N+ R W R + G+
Sbjct: 235 LDAGRRVVLCGDWNVSYGVIDSAVAIEERLMDEALCERNQSRQWLRRQVSGGEGAKGAER 294
Query: 113 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 170
DVFR +P R AYTCW + GA+ NYG+RID+ LC
Sbjct: 295 DPLVDVFRRDYPAARGAYTCWNVSAGAQLTNYGSRIDYFLC-------------DEVTAA 341
Query: 171 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
V C G++ + EGSDHAPV++ +
Sbjct: 342 SVARC-------------------GIAPKHEGSDHAPVFIIV 364
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 449 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 508
+ W+ IQ+ M + P C+GH PC R VK+ G GR FF C + +G + A+CG+
Sbjct: 518 VAAWKAIQKRM--APPKCRGHGLPCKVRTVKE-GANKGRGFFCCPKPKGMKGDKNADCGF 574
Query: 509 FKW 511
F+W
Sbjct: 575 FQW 577
>gi|148675568|gb|EDL07515.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_c [Mus musculus]
Length = 543
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 142 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 201
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 202 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 261
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 262 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 306
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 307 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 349
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 350 LCTRFLPEFAGTQLKILRFLVPLE 373
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 400 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 458
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P + ++KG+R W+ +
Sbjct: 459 TMLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 486
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 487 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 540
>gi|73921677|sp|Q68G58.1|APEX2_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|51259055|gb|AAH78633.1| Apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 516
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P +DEK ER W+ +
Sbjct: 432 TVLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|26354044|dbj|BAC40652.1| unnamed protein product [Mus musculus]
Length = 523
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 122 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 181
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 182 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 241
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 242 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 286
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 287 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 329
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 330 LCTRFLPEFAGTQLKILRFLVPLE 353
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 380 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 438
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P +DEK ER W+ +
Sbjct: 439 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 466
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 467 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 520
>gi|148675569|gb|EDL07516.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_d [Mus musculus]
Length = 530
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 129 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 188
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 189 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 248
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 249 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 293
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 294 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 336
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 337 LCTRFLPEFAGTQLKILRFLVPLE 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 387 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 445
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P +DEK ER W+ +
Sbjct: 446 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 473
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 474 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 527
>gi|21541818|ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus]
gi|19912820|dbj|BAB88654.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|22830557|dbj|BAC11807.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|26341548|dbj|BAC34436.1| unnamed protein product [Mus musculus]
gi|148675566|gb|EDL07513.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_a [Mus musculus]
Length = 516
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P +DEK ER W+ +
Sbjct: 432 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|152002965|gb|ABS19620.1| DNA lyase [Coccidioides posadasii]
Length = 606
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 208/540 (38%), Gaps = 95/540 (17%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
E LE D + IDSEGRCVI + F+L VY P + D R F+ F +VL R
Sbjct: 125 EQLELLPIDPV-TIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVFRAAFLNVLDMRV 181
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFRIWFRSMLVESGG 111
L G+R+ ++GD+NI+ ID +F + R F + LV GG
Sbjct: 182 RNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPSRRLF-NQLVGGGG 240
Query: 112 S----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ DV R HP+R YTCW A NYG RID++LC+
Sbjct: 241 ARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYVLCS--------- 291
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+D + W + + L GSDH PVY + +
Sbjct: 292 -----------------VDMEDWFT------ESNIQEGLMGSDHCPVYGIINDTVSCRNM 328
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVD 281
+T L P G+ + + R+ S SG L E + +D +
Sbjct: 329 NTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHRRRSLKDMFQTAS 380
Query: 282 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 341
+ + + L S + ++ ++++ + N +
Sbjct: 381 GASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPKRALENWTALSPA 440
Query: 342 DRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 395
RA+K + GQ +L SF + R + ++ S LNV + + + + +
Sbjct: 441 KRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNVPDEIKEHTGNVR 497
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 455
PES + N S S++ + ++ + G+R + + + A L
Sbjct: 498 ASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSAKESWAKL----- 541
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
+ + P C+GH EPC+ V KKPGP GR F++C R GP+ N E C F W
Sbjct: 542 --FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKEIGTPWRCSTFIW 599
>gi|148675567|gb|EDL07514.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_b [Mus musculus]
Length = 402
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 1 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 60
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 61 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 120
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 121 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 165
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 166 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPAKQCPA 208
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 209 LCTRFLPEFAGTQLKILRFLVPLE 232
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 348 SPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 399
>gi|146323277|ref|XP_754988.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|129558370|gb|EAL92950.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|159128003|gb|EDP53118.1| DNA lyase Apn2 [Aspergillus fumigatus A1163]
Length = 648
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 139/545 (25%), Positives = 206/545 (37%), Gaps = 106/545 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 155 LDSEGRCVILEFPAFVLLGIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVFVT 212
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVES-----------GGSF 113
GDLNIA +D A K +EF R F +L +
Sbjct: 213 GDLNIAKGELDAAHATEAIRKGAITEDEFISAPARRVFNQLLSDGRVIGQRDEGRESPVL 272
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
FD+ RS HP RR YTCW A NYG RID++LC+ D+Q F ++
Sbjct: 273 FDICRSFHPGRRGMYTCWEQRIIARPGNYGARIDYVLCS-------LDMQDW-FSDSNIQ 324
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 233
E L GSDH PVY +V + L P
Sbjct: 325 EG------------------------LMGSDHCPVYAVFKDVVRLGDKEVNILDIMNPP- 359
Query: 234 IRGVQQTLVSVLMKREVAKQGKSCKF----SGSLPAESNSTGDTEDCSENVDRSLNNYCD 289
+ K +Q + K+ SG L E + +D S N
Sbjct: 360 ----------GMFKDGQRQQEYTTKYLLPTSGRLIPEFDKRRSIKDMFSR-KPSTNAQTP 408
Query: 290 SGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQ-------GSSNHISPFHVD 342
+ + S E+E T E+ + S ST T+ S SP
Sbjct: 409 ATNPPALRRFGSTHETETP-TAVSESTAGRSVAVSDSTQTKQIVRKRSQKSEAGSPVSFK 467
Query: 343 RAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
R++ + + S GQ +LK FF +++ + +IT S +V+ T+ S++
Sbjct: 468 RSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--QATITQDSASVSTVPTNQSVA----- 520
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-------VALLE 451
PVT+ + +Q RN+ + +
Sbjct: 521 ---FPRESAPVTELTALEETRTAPAGEALPGEQPNSTTTTTPASSRNDDTVHDPIASKED 577
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W ++ + P C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 578 WSKL--FTKKPAPKCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCP 635
Query: 508 YFKWA 512
F WA
Sbjct: 636 TFIWA 640
>gi|120586985|ref|NP_001073361.1| uncharacterized protein LOC317628 [Rattus norvegicus]
gi|119850781|gb|AAI27531.1| Similar to apurinic/apyrimidinic endonuclease 2 [Rattus norvegicus]
gi|149031345|gb|EDL86343.1| rCG38932, isoform CRA_a [Rattus norvegicus]
Length = 516
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 122/263 (46%), Gaps = 50/263 (19%)
Query: 5 EDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFH 55
++F+++EL +DSEGR +T H L NVY P AD R+ FK++F+
Sbjct: 116 DEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYR 175
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG--- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 176 LLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGNEA 235
Query: 111 ----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 236 GPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------------- 279
Query: 167 FVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL 226
+ ++ID + + + GSDH PV L V +P P+L
Sbjct: 280 ------GDRSLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPAL 323
Query: 227 ASRYLPIIRGVQQTLVSVLMKRE 249
+R+LP G Q ++ L+ E
Sbjct: 324 CTRFLPEFAGTQLKILRFLVPLE 346
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 397
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 373 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 430
Query: 398 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 457
NK+P +DEK+ V W+ +
Sbjct: 431 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 459
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 460 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|152002960|gb|ABS19616.1| DNA lyase [Coccidioides immitis]
Length = 625
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 208/540 (38%), Gaps = 95/540 (17%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
E LE D + IDSEGRCVI + F+L VY P + D R F+ F +VL R
Sbjct: 144 EQLELLPIDPV-TIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVFRAAFLNVLDMRV 200
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFRIWFRSMLVESGG 111
L G+R+ ++GD+NI+ ID +F + R F + LV GG
Sbjct: 201 RNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPSRRLF-NQLVGGGG 259
Query: 112 S----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ DV R HP+R YTCW A NYG RID++LC+
Sbjct: 260 ARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYVLCS--------- 310
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+D + W + + L GSDH PVY + +
Sbjct: 311 -----------------VDMEDWFT------ESNIQEGLMGSDHCPVYGIINDTVSCRNM 347
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVD 281
+T L P G+ + + R+ S SG L E + +D +
Sbjct: 348 NTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHRRRSLKDMFQTAS 399
Query: 282 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 341
+ + + L S + ++ ++++ + N +
Sbjct: 400 GASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPKRALENWTALSPA 459
Query: 342 DRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 395
RA+K + GQ +L SF + R + ++ S LNV + + + + +
Sbjct: 460 KRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNVPDEIKEHTGNVR 516
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 455
PES + N S S++ + ++ + G+R + + + A L
Sbjct: 517 ASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSAKESWAKL----- 560
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
+ + P C+GH EPC+ V KKPGP GR F++C R GP+ N E C F W
Sbjct: 561 --FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKEIGTPWRCSTFIW 618
>gi|345326277|ref|XP_001510545.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ornithorhynchus anatinus]
Length = 671
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 154/374 (41%), Gaps = 62/374 (16%)
Query: 5 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 55
E F++DEL +DSEGR VIT H + NVY P AD E R FKL+F+H
Sbjct: 248 EGFTEDELRALDSEGRAVITQHRIRTSDKREKTLTVINVYCPHADPEKPERKTFKLRFYH 307
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-AGPD-FAKNEFRIWFRSMLVESG--- 110
+L+ R E +L G + ++GD+N + ID CD + P+ F +N R W L E G
Sbjct: 308 LLKLRAEAILRAGSHVIILGDVNTSHRPIDHCDPSDPEHFDENPGRRWLNEFLWEPGKAP 367
Query: 111 --------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
G+F D FR HP + A+TCW GA NYGTRID+IL
Sbjct: 368 GKGEVADPPPGGGGGAFVDSFRYFHPTQTNAFTCWSVPQGARHTNYGTRIDYILG----- 422
Query: 157 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216
VT + +L + +EGSDH PV L
Sbjct: 423 -------DRILVTEEFEDSVLLPE-------------------VEGSDHCPVRAVLKST- 455
Query: 217 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 276
+ P ++YLP G QQ L L++ + ++G S P + + D
Sbjct: 456 LMAAPKCPPFCTKYLPEFAGKQQKLSQFLVR--LDRRGGSRSSPPDSPESAEAVEDVAPP 513
Query: 277 SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI 336
+ R+ G+ + +S + F K +N AN + +
Sbjct: 514 NRQEKRNSAEKTKVGVKKNRTSASRGGGTLLRFFKPGDNREGKANPPEKMGPDRAVQDQQ 573
Query: 337 SPFHVDRARKKAKK 350
+ V +A ++AK+
Sbjct: 574 AVIGVPQAAEQAKR 587
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 515
CK H EPCV R VKK GP GR+F+VCAR G A+NP A C +F W K
Sbjct: 617 CKVHGEPCVMRTVKKAGPNHGRQFYVCARPVGHATNPAARCDFFLWVPKK 666
>gi|321477228|gb|EFX88187.1| hypothetical protein DAPPUDRAFT_305561 [Daphnia pulex]
Length = 476
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 119/255 (46%), Gaps = 44/255 (17%)
Query: 7 FSKDELLKIDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVLQ 58
F+ + L +D+EGRCV+T H ++ NVY P A D R+ +KL+F+ L
Sbjct: 107 FTDEGLRALDAEGRCVMTLHKFKKEETSISLVVINVYCPNAGENDE-RLPYKLEFYRALN 165
Query: 59 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGSFFDV 116
R L QG + V+GD+N++ ID C+ F K+ R+W L E GG F D
Sbjct: 166 LRCHDFLSQGYYVIVLGDMNVSHRLIDHCEPEDVSSFPKSPSRLWLDGFLHEGGGKFVDS 225
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 176
FR +P + +A+TCW + A NYGTRID+IL + N +T + +C
Sbjct: 226 FRHLYPTKEKAFTCWNTKLSARVNNYGTRIDYILLS-------------NQLTDALQDCI 272
Query: 177 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRG 236
I+ D + GSDH PV L + IP P+L +++ G
Sbjct: 273 IMSD-------------------VYGSDHCPVKSSLA-LDIIPSTKLPALCTKFFKEFSG 312
Query: 237 VQQTLVSVLMKREVA 251
Q + + KR +A
Sbjct: 313 KQLKMSTFFCKRTLA 327
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+E C R VKK GP R+F+ C+RA G +S+ A C +F WA
Sbjct: 426 PLCSGHQEACTLRTVKKKGPNMNRQFWTCSRATGHSSDLNAQCNFFVWA 474
>gi|307752095|gb|ADN93066.1| putative DNA lyase [Arthroderma benhamiae]
Length = 588
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 153/564 (27%), Positives = 231/564 (40%), Gaps = 121/564 (21%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 88 IEQMEELSEVDPITVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 145
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVES 109
L+ G+R+ + GDLN ID A K E+ RI+ R LV
Sbjct: 146 VRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRP 203
Query: 110 GGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 157
GS D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 204 VGSTGDTHDTETPPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS----- 258
Query: 158 QKHDLQSHNFVTCHVNECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
D FV ++ E I+ + Y+ +K + + +GSDH PVY +
Sbjct: 259 ---DNIRSWFVESNIQEGLIVCVKLELTYR--------SFKNLLISNEQGSDHCPVYASI 307
Query: 213 GE-VP------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 265
+ VP I P A GV+Q + ++ SG L
Sbjct: 308 SDRVPFDGKDVHILDIMNPKGA-----FDDGVEQPRSNKIVP---------LALSGRLIP 353
Query: 266 ESNSTGDTEDC-------SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
E + + +D N + ++ D+ + +S +S E KT +
Sbjct: 354 EFDRRRNIKDMFRNHSLSQTNSEVKMSTTTDTQAGSEIPGPASQIKSAQE-NKTAPVTMN 412
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHKRSN---VSHDD 372
A SHST Q S+ R ++K + S GQ +L FF VS ++
Sbjct: 413 HAPKRSHSTGAQAPSSK-------RPKQKGRPSGARSNGQQTLVGFFKSEKTSRAVSEEN 465
Query: 373 NNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD 432
+ +D+ V T S E+ + +++ IP T + S NS V S
Sbjct: 466 ATASSDSPQEAPAEVKITPAS--ELASTAENNDSIP-TAVTASPD-----NSIVPSCSPT 517
Query: 433 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 492
E K F K +P C+GH E C++ V KKPG GR F++C
Sbjct: 518 ESWSKVFTRK-------------------PVPKCEGHHEDCISLVTKKPGINCGRSFWIC 558
Query: 493 ARAEGPASNPEAN----CGYFKWA 512
R GP+ + E+ C F W+
Sbjct: 559 PRPLGPSGDKESGTPWRCPTFIWS 582
>gi|348551967|ref|XP_003461800.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cavia
porcellus]
Length = 514
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY PR D E R+ FK++F
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPRVDPEKPERLTFKMRFC 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 176 RLLQNRAEALLAAGSHVIILGDLNTAHRRIDHCDAINLKYFEEDPARKWMDGLLNNIGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G+F D +R P++ A+TCW +GA NYG+R+D++L G + LQS
Sbjct: 236 SRSPVGTFIDTYRYFQPQQEGAFTCWSVVSGARHHNYGSRLDYVL--GDRTLVRDTLQS- 292
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+F+ V GSDH PV L V +P P
Sbjct: 293 SFLLPEVM----------------------------GSDHCPVGAVLN-VSSVPAKHPPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+ P G Q +V L+ E
Sbjct: 324 LCTRFFPEFAGTQLKIVHFLVPLE 347
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC+GH+EPC+ R VKKPGP GRRF++CAR +GP S+P + C +F+W+
Sbjct: 462 MPLCRGHREPCIMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWS 511
>gi|12862077|dbj|BAB32346.1| unnamed protein product [Mus musculus]
Length = 385
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPXKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F + R W +L G
Sbjct: 175 RLLQMRAEPLLAAGSHVIILGDLNTAHRPIDHCDASSLECFEXDPGRKWMDGLLSNPGDE 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVPLE 346
>gi|393240753|gb|EJD48278.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 100/208 (48%), Gaps = 42/208 (20%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++L++D EGR ++ D G F+L N+Y P S+ RI FK F +L +R L +GR
Sbjct: 136 DVLELDGEGRALVLDFGLFVLVNLYCPAETSD--ARIPFKANFHRLLGERLRILRAEGRG 193
Query: 71 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
I VVGD+NI +D CD F + E R+W R +L E G F DV R HP R+
Sbjct: 194 IIVVGDINICSTPLDHCDFTLPSTHETFFERETRVWMRDLL-EPVGPFVDVVRRFHPGRK 252
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
YTCW + A NYGTRID+ILC
Sbjct: 253 GMYTCWNTRINARDSNYGTRIDYILCTS-------------------------------- 280
Query: 186 PGNAPRWKGG-MSTRLEGSDHAPVYMCL 212
G P KGG + ++GSDH PVY+ L
Sbjct: 281 -GLLPWMKGGDIQASVKGSDHCPVYVDL 307
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 505
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 506 CGYFKW 511
C YFKW
Sbjct: 583 CDYFKW 588
>gi|351705897|gb|EHB08816.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Heterocephalus glaber]
Length = 518
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY PR D E R+ FK+ F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPRVDPEKPERLTFKMSFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
H+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L +
Sbjct: 176 HLLQIRAEALLAAGSHVIILGDLNTAYRRIDHCDAVNLECFEEDPGRKWMDGLLNNLECQ 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+G G F D +R P++ A+TCW GA NYG R+D+IL
Sbjct: 236 AGSHMGPFIDTYRYFQPQQEGAFTCWSVVNGARHLNYGCRLDYIL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ +++D + + + GSDH PV L V +P P
Sbjct: 281 -------GDRSLVMDTFQ---------ASFLLPEIMGSDHCPVGAVLN-VSSVPAKHCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+ P G Q ++ L+ E
Sbjct: 324 LCTRFFPEFAGTQLKILRFLVPLE 347
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC+GH+EPCV R VKKPGP GRRF++CAR +GP S+P + C +F+W
Sbjct: 466 MPLCRGHREPCVMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWT 515
>gi|354503214|ref|XP_003513676.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cricetulus griseus]
gi|344248357|gb|EGW04461.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+ +F++++L +DSEGR V+T H L NVY P AD R+ FK+ F+
Sbjct: 115 MTEFTQEQLRALDSEGRAVLTQHKIHTWEGKEKPLTLINVYCPHADPGKPERLTFKMHFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID CDAG F ++ R W +L +
Sbjct: 175 RLLQIRAEALLAAGCHVIILGDLNTAHRPIDHCDAGSLECFEEDPGRKWLDGLLSDLECQ 234
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+G G F D +R +P++ A+TCW TGA FNYG R+D++L
Sbjct: 235 TGSHIGPFMDSYRYFYPKQEGAFTCWSVITGARHFNYGARLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + ++GSDH PV L + +P P+
Sbjct: 280 -------GDRTLIIDTFQ---------AAFLLPEVKGSDHCPVGAVL-NMSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L +R+LP G Q ++ L+
Sbjct: 323 LCTRFLPEFSGTQLKILGFLV 343
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
+++ V L W+ + + PLC+GHKEPCV R+VKKPGP GR F++CAR +GP +
Sbjct: 445 EDKKVVQTLFWKSVLS-GPSPAPLCRGHKEPCVMRIVKKPGPNMGRHFYICARPQGPPDD 503
Query: 502 PEANCGYFKW 511
P ++C +F W
Sbjct: 504 PSSSCNFFLW 513
>gi|350297224|gb|EGZ78201.1| DNase I-like protein [Neurospora tetrasperma FGSC 2509]
Length = 654
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/564 (23%), Positives = 218/564 (38%), Gaps = 115/564 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGRCVI + F+L VY P + D RI+F+ F + R L+ G+ +F+
Sbjct: 134 QLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVFL 191
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GS 112
GDLNI +D K + F + +V G
Sbjct: 192 CGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVVGGRVIGEPDEGREKPV 251
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ R HP+R YTCW + A N+G+RID++LC+ FV ++
Sbjct: 252 LWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDANI 303
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP-------- 216
E L GSDH PVY + + +P
Sbjct: 304 QEG------------------------LLGSDHCPVYATISDSVSRDGVIIPITDIMNPE 339
Query: 217 ----------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 266
E Q ++R +P +Q++ + +K+ K + P
Sbjct: 340 GMFKNGQRQREWSQKDCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPKS 389
Query: 267 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 326
+ D++D S++ + S + +LQG S+S+ + E +
Sbjct: 390 ATPAADSQDISDSPNTSSITVNATTVLQGTASSASSPRQWLSQSAATEPALSQTSPVPKR 449
Query: 327 TITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDT 379
Q + P A K S+ G Q +L FF ++ V+ D+ + +
Sbjct: 450 QAEQPAPYTRPPKKTKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPING 509
Query: 380 SLNVNNSVTDTSL------SQEEVPESHHHSNKIPVTDYSCSVHELHGVN-SSVCSHDQD 432
+ + + +T+L ++E P+ ++ I D + H+ + + +D
Sbjct: 510 NNHSPATTAETALRNEPSTAKESQPKQSFEADNIEEWDENTVEHKTNPTTYRETSTAMED 569
Query: 433 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 492
E KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++C
Sbjct: 570 EGKGKTIFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMC 623
Query: 493 ARAEGPASNPEAN----CGYFKWA 512
AR GP+ N E C F W+
Sbjct: 624 ARPLGPSGNKETGTEFRCKTFIWS 647
>gi|311276364|ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa]
Length = 515
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H + NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 176 HLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQ 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+G G F D +R P+++ A+TCW + TGA NYG+RID++L + D
Sbjct: 236 AGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALV---MDTFQS 292
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+FV V GSDH PV L P +P P
Sbjct: 293 SFVLPEVM----------------------------GSDHCPVGAVLNVSP-VPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L++ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVRLE 347
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 502 PEANCGYFKWA 512
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
>gi|326481851|gb|EGE05861.1| DNA lyase [Trichophyton equinum CBS 127.97]
Length = 592
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 145/565 (25%), Positives = 227/565 (40%), Gaps = 144/565 (25%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 113 IEQMEELSEVDPITVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 170
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVES 109
L+ G+R+ + GDLN AID A K E+ RI+ R LV
Sbjct: 171 VRNLVKMGKRVILAGDLNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRP 228
Query: 110 GGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 157
GS D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 229 VGSTGDTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS----- 283
Query: 158 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 217
+++S FV ++ E L GSDH PVY + + +
Sbjct: 284 --DNIRSW-FVESNIQEG------------------------LIGSDHCPVYASISD--K 314
Query: 218 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESN 268
+P + G ++ ++ + + + G SG L E +
Sbjct: 315 VP--------------LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFD 360
Query: 269 STGDTEDCSENVDRSLNN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRD 318
+ +D N S NN + I G ++E K TI N
Sbjct: 361 RRRNIKDMFRNHSLSRNNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN--- 417
Query: 319 SANVASHSTITQGS-SNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSI 376
SHS Q S S + P + R +S GQ +L FF +R++ + + N+
Sbjct: 418 -PPKRSHSKGAQASPSKRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA- 470
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
T +S S +E P + P ++ S ++ V + V +
Sbjct: 471 -----------TASSDSPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD----- 511
Query: 437 KRFLDKERNNVA-----LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 491
N+V W ++ + +P C+GH E C++ V KKPG GR F++
Sbjct: 512 --------NSVVPSCSPTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWI 561
Query: 492 CARAEGPASNPEAN----CGYFKWA 512
C R GP+ + E+ C F W+
Sbjct: 562 CPRPLGPSGDKESGTPWRCPTFIWS 586
>gi|395819091|ref|XP_003782935.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Otolemur
garnettii]
Length = 518
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 118/264 (44%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY PR D R+ FK++F+
Sbjct: 116 MDEFTQEELRGLDSEGRALLTQHKIHTEEGKERTLTLINVYCPRVDPGKPERLAFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLESFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P+++ A+TCW TGA NYG+RID++ L
Sbjct: 236 SGSHVGPFIDSYRYFQPKQKGAFTCWSVVTGARHLNYGSRIDYV------------LGDR 283
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
V +L D + GSDH PV L P +P P
Sbjct: 284 TLVIDTFQASFLLPD-------------------VMGSDHCPVGAVLNVSP-VPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLC GH+EPCV R VKKPGP GR F++CAR +GP ++ + C +F W
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRCFYICARPQGPPTDLSSRCNFFLW 514
>gi|301114885|ref|XP_002999212.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
gi|262111306|gb|EEY69358.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
Length = 482
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 120/258 (46%), Gaps = 62/258 (24%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L +++EGRC+ITDH F+L N Y P S D R+++KLQF +L+ R L +R+
Sbjct: 118 LNDLEAEGRCIITDHQTFVLLNTYCPALASAD--RLEYKLQFHGLLEDRVNALRAANKRV 175
Query: 72 FVVGDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSMLVESGGSFF----------- 114
VVGD+NIA ID CD G F + R W S + SG +
Sbjct: 176 IVVGDINIAHREIDHCDPHAHRDDGSSFGDHPCRKWMDSFVGVSGEKYLPNPHSDDIVDG 235
Query: 115 -------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 167
D +R HP++ +AYTCW + TGA Q NYGTRID+IL A P F
Sbjct: 236 EPAVKMIDTYRHFHPDQTKAYTCWNTQTGARQTNYGTRIDYIL-ADP-----------TF 283
Query: 168 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEVPEIPQHS---T 223
+ C V+ C ID +R GSDH PV M C E+ + T
Sbjct: 284 IEC-VSSCS--IDAERL-----------------GSDHCPVLMSCTVELETSSSTNTGIT 323
Query: 224 PSLASRYLPIIRGVQQTL 241
+L +R G QQ++
Sbjct: 324 AALCARNFAEFSGTQQSI 341
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 450 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 509
LEW ++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 410 LEWAQVLNGRPPPTPLCHC-GQPTVLRSVIKTNENWGRKFYVCTKPAGEKGNPDARCDFF 468
Query: 510 KWAFSKSKQK 519
KW K +K
Sbjct: 469 KWVDKKGTKK 478
>gi|386780804|ref|NP_001248294.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|380790123|gb|AFE66937.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|383413815|gb|AFH30121.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|384943488|gb|AFI35349.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID R + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFR---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|432099379|gb|ELK28619.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 512
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 53/271 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK++F+
Sbjct: 113 MDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKMRFY 172
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---S 109
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 173 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSKLDCQ 232
Query: 110 GGS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
GGS F D +R HP++ A+TCW + TGA + NYG+RID++ L
Sbjct: 233 GGSHVGAFIDTYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------LGDR 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
VT + +L + + GSDH PV L V +P P
Sbjct: 281 TLVTDTFQDSFLLPE-------------------VMGSDHCPVGAVL-NVSSVPAKQCPP 320
Query: 226 LASRYLPIIRGVQQTLVSVLM---KREVAKQ 253
L +R+LP G Q ++ L+ + V+KQ
Sbjct: 321 LCTRFLPEFSGTQLKILHFLVHPKQEPVSKQ 351
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+P+C GH EPCV R VKK GP GR F++C+R GP+++P + C +F W+
Sbjct: 460 MPVCGGHGEPCVMRTVKKAGPNQGRHFYMCSRPRGPSTDPSSRCNFFLWS 509
>gi|242813026|ref|XP_002486082.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
gi|218714421|gb|EED13844.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
Length = 642
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 141/560 (25%), Positives = 207/560 (36%), Gaps = 113/560 (20%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
ME L D D + +D EGRCVI + F+L +Y P A D R F+ F ++L R
Sbjct: 141 MEQLSDLQVDPAV-LDCEGRCVILEFPAFVLLGLYCPAA--RDETRDDFRQGFINLLDAR 197
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESG 110
L+ G+R+ V GDLNI+ ID R G + F + R F + LVE
Sbjct: 198 IRNLVSMGKRVIVTGDLNISVGEIDSAHLTEAIRKGTGSEDEFVSSPVRRVF-NQLVEGA 256
Query: 111 GS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
D+ RS HP RR YTCW + A NYG RID+IL +
Sbjct: 257 KVVGQRDPAREVPVLHDICRSFHPGRRGMYTCWETRVNARPGNYGARIDYILSS------ 310
Query: 159 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGEVPE 217
+D K W W + + L GSDH PVY +
Sbjct: 311 --------------------LDMKDW-------WSEANIQEGLMGSDHCPVYATFKD--- 340
Query: 218 IPQHSTPSLASRYLPI--IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 275
SL + I I + + +RE + + SG L E +D
Sbjct: 341 -----KISLEGNEIDIKDIMNPPGVFKNGIRQREYSTK-DLLPLSGRLIPEFTQRRSIKD 394
Query: 276 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA---SHSTITQGS 332
S + I V S+ E T + E + + + S + S
Sbjct: 395 MFTRKPSSSLKDSVTPITNVVDEESAPTPPESTITNSAEPFQSPSKPGLYKTQSNASNAS 454
Query: 333 SNHIS-----------PFHVDRARKK--AKKSQLGQLSLKSFFHKRSNVSHDDNNS---I 376
SN +S P ++R K + GQ SL FF + + D N+ I
Sbjct: 455 SNGLSKRTRKESAPAPPPKRSKSRGKLDTNTTSKGQQSLIGFFKPKKTQDNQDTNTTQEI 514
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
+D L+ +++ T + +P H + + + + DE
Sbjct: 515 SDRGLDGAFTISPTKSISQVLPSPHKPT----------PTSQTTAQDDGSTTESTDETVI 564
Query: 437 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
+ KE W ++ + + P C+ H+EPC+ KKPG GR F++C+R
Sbjct: 565 DPIVSKE-------SWSKL--FTKKATPKCEEHQEPCIMLTTKKPGINCGRAFWMCSRPL 615
Query: 497 GPASNPEAN----CGYFKWA 512
GP E C F WA
Sbjct: 616 GPTGQKEKGTQWRCKTFIWA 635
>gi|426256950|ref|XP_004022099.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Ovis aries]
Length = 514
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 123/261 (47%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
L+DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 LDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|326471548|gb|EGD95557.1| DNA lyase [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 144/565 (25%), Positives = 226/565 (40%), Gaps = 144/565 (25%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 113 IEQMEELSEVDPITVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 170
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVES 109
L+ G+R+ + GDLN AID A K E+ RI+ R LV
Sbjct: 171 VRNLVKMGKRVILAGDLNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRP 228
Query: 110 GGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 157
GS D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 229 VGSTGDTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS----- 283
Query: 158 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 217
+++S FV ++ E L GSDH PVY + + +
Sbjct: 284 --DNIRSW-FVESNIQEG------------------------LIGSDHCPVYASISD--K 314
Query: 218 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESN 268
+P + G ++ ++ + + + G SG L E +
Sbjct: 315 VP--------------LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFD 360
Query: 269 STGDTEDCSENVDRSLNN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRD 318
+ +D N S NN + I G ++E K TI N
Sbjct: 361 RRRNIKDMFRNHSLSRNNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN--- 417
Query: 319 SANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSI 376
SHS Q S + P + R +S GQ +L FF +R++ + + N+
Sbjct: 418 -PPKRSHSKGAQAPPSKRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA- 470
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
T +S S +E P + P ++ S ++ V + V +
Sbjct: 471 -----------TASSDSPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD----- 511
Query: 437 KRFLDKERNNVA-----LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 491
N+V W ++ + +P C+GH E C++ V KKPG GR F++
Sbjct: 512 --------NSVVPSCSPTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWI 561
Query: 492 CARAEGPASNPEAN----CGYFKWA 512
C R GP+ + E+ C F W+
Sbjct: 562 CPRPLGPSGDKESGTPWRCPTFIWS 586
>gi|18375507|ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1 [Homo
sapiens]
gi|73921676|sp|Q9UBZ4.1|APEX2_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease XTH2; AltName: Full=APEX nuclease
2; AltName: Full=APEX nuclease-like 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|4996359|dbj|BAA78422.1| APEX nuclease-like 2 protein [Homo sapiens]
gi|5102658|emb|CAB45242.1| AP endonuclease XTH2, putative [Homo sapiens]
gi|10336529|dbj|BAB13764.1| apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gi|12804203|gb|AAH02959.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57864642|gb|AAW56941.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|119613615|gb|EAW93209.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_b
[Homo sapiens]
gi|123993987|gb|ABM84595.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|123997761|gb|ABM86482.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|208965822|dbj|BAG72925.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|311347418|gb|ADP90654.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347420|gb|ADP90655.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347422|gb|ADP90656.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347424|gb|ADP90657.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347426|gb|ADP90658.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347428|gb|ADP90659.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347430|gb|ADP90660.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347432|gb|ADP90661.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347434|gb|ADP90662.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347436|gb|ADP90663.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347438|gb|ADP90664.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347440|gb|ADP90665.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347442|gb|ADP90666.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347444|gb|ADP90667.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347446|gb|ADP90668.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347448|gb|ADP90669.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347450|gb|ADP90670.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347454|gb|ADP90672.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347456|gb|ADP90673.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347458|gb|ADP90674.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347460|gb|ADP90675.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347462|gb|ADP90676.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347464|gb|ADP90677.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347466|gb|ADP90678.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347468|gb|ADP90679.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347470|gb|ADP90680.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347472|gb|ADP90681.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347474|gb|ADP90682.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347476|gb|ADP90683.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347478|gb|ADP90684.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347480|gb|ADP90685.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347482|gb|ADP90686.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347484|gb|ADP90687.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347488|gb|ADP90689.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347490|gb|ADP90690.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347492|gb|ADP90691.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347494|gb|ADP90692.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347496|gb|ADP90693.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|5410346|gb|AAD43041.1|AF119046_1 APE2 protein [Homo sapiens]
Length = 518
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|410211214|gb|JAA02826.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410247596|gb|JAA11765.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410289688|gb|JAA23444.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410336533|gb|JAA37213.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
Length = 518
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|311347452|gb|ADP90671.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396092|ref|XP_004064289.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Gorilla gorilla gorilla]
Length = 518
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSSLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396094|ref|XP_004064290.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Gorilla gorilla gorilla]
Length = 525
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 123 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 182
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 183 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSSLGCQ 242
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 243 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 287
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 288 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 330
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 331 LCTRFLPEFAGTQLKILRFLVPLE 354
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 474 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 522
>gi|397471227|ref|XP_003807199.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
paniscus]
Length = 518
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK+ F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLVFKMHFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|311347486|gb|ADP90688.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARYLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|303313137|ref|XP_003066580.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240106242|gb|EER24435.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 588
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 213/540 (39%), Gaps = 111/540 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R F+L F + L R L+ G+R+ V
Sbjct: 109 LDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIRNLIFLGKRVVVA 166
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESG------------GS 112
GDLNI+ AID A +F + RI F + LVE G
Sbjct: 167 GDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGGRVSHIEGVDKKDAV 225
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ RS P R YTCW A N+G RID+ILC+ L ++++
Sbjct: 226 LWDMCRSFFPARSGMYTCWEQRINARPGNFGARIDYILCS---------LDMKDWMSIAD 276
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
+ +++ GN ++ + +GSDH PVY E +
Sbjct: 277 IQEGLMV-------GNNFQYALYQADSSQGSDHCPVYAIFKENVD--------------- 314
Query: 233 IIRGVQQTLVSVL---MKREVAKQGKS---CKFSGSLPAESNSTGDTEDCSENVDRSLNN 286
+ G Q V+++ + E A+ S SG L E N + D
Sbjct: 315 -LHGDQIDFVNLMNPSVDFEAAENSLSRSHLPLSGRLIPEFNRRRNIRD----------- 362
Query: 287 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 346
+ SS+ S GE + + N ++ S+ I R +K
Sbjct: 363 -------MFLRQSSTQNLSPGEINQNATSMSSMTNKGRPISLDLERSHEIDERDPKRRKK 415
Query: 347 KAKKSQL---GQLSLKSFFH------KRSNVSHDDNNSITDTSLN--VNNSVTDTSLSQE 395
+ L Q S++ FF+ K+SN++ D +I D+ N N+S S
Sbjct: 416 EPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLAK-DCEAINDSVPNERKNDSGPGHRTSGI 474
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 455
P+++ P T + + V S + + D D+E W +I
Sbjct: 475 SPPDANPDFEADPQTSQESTT--VSAVPSRIVA---DINVMSSIPDQE-------SWNKI 522
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
+ P C+GH+EPCV V KKPG GR F++C R GP+ N E C F W
Sbjct: 523 --FKKRPPPRCEGHEEPCVRLVTKKPGINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 580
>gi|297710110|ref|XP_002831748.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pongo
abelii]
Length = 518
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F + R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAITGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355757398|gb|EHH60923.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca fascicularis]
Length = 518
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355704840|gb|EHH30765.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|403306456|ref|XP_003943750.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID D+ F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 466 VPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|358384928|gb|EHK22525.1| DNA lyase, partial [Trichoderma virens Gv29-8]
Length = 630
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 143/570 (25%), Positives = 228/570 (40%), Gaps = 134/570 (23%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DELL +DSEGRCVI + F+L VY P + D R++F+++F L R L+ +G+
Sbjct: 120 DELL-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVEFRMEFLQALDARVRNLVAEGK 176
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS--------- 112
++ +VGDLN++ +A D + + K + W R + + GG+
Sbjct: 177 QVVLVGDLNVSRSAADSTNVVENLRKEGLSMEEWMNLPSRRLFNHLVYGGTVQGDRDEGR 236
Query: 113 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R TCW + N G+RID++LC+ H L+ ++V
Sbjct: 237 EQPVLWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLR--DWV 287
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VPEIPQ 220
T + + L GSDH PV+ L + VP +
Sbjct: 288 T-----------------------EANIQEGLMGSDHCPVFATLADVVTTGSEKVPLLNL 324
Query: 221 HSTPSLASR------------YLPIIRGV------QQTLVSVLMKREVAK-QGKSCKFSG 261
+ P + R LP+ + +Q++ + K+ AK +S +
Sbjct: 325 VNPPGMVDRDGRRLREWHPKDVLPLSAKLIPEFDRRQSIRDMFTKKAGAKLSSQSSSLAP 384
Query: 262 SLPAESNSTGD----TEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCR 317
S ES GD E N S+ ++ + G S+S+Q ++ R
Sbjct: 385 SSATESTPEGDDLARLEQPGANTKTSVADHRLG--MSGASHSASSQ--------SLTGLR 434
Query: 318 DSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVSHDDNNSI 376
A + + S SP AR ++ GQ +L+ FF S N +S
Sbjct: 435 PEAPSTKRAAGSIDRSRPPSPKRNKNAR-SSRAGTKGQKTLQGFFQPSSTNRVVGRRDSD 493
Query: 377 TDTSLNVNNSVT----DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD 432
T TS N N S T+ E P SH PV +
Sbjct: 494 TTTSANANASAPFSCKQTTTQPSEPPLSHQAQLASPVDNLPL------------------ 535
Query: 433 EKKGKRFLDKERNNV------ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 486
E+ G +++ ++V A W ++ L + +P C+ H EPC++ K+PG G
Sbjct: 536 ERSGGDWIEGLPDSVVFDPIQAKESWSKL--LGKRMLPRCE-HNEPCISLTTKRPGVNCG 592
Query: 487 RRFFVCARAEGPASNPEAN----CGYFKWA 512
R F++CAR GP+ E CG F W+
Sbjct: 593 RSFYICARPLGPSGEKERGSEWRCGTFIWS 622
>gi|225558763|gb|EEH07047.1| DNA lyase Apn2 [Ajellomyces capsulatus G186AR]
Length = 636
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 141/542 (26%), Positives = 210/542 (38%), Gaps = 98/542 (18%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F +VL R L G+R+ V
Sbjct: 142 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLAAMGKRVIVT 199
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI+ + ID A +F + R F + LV+ G
Sbjct: 200 GDLNISGSQIDSARALEGVRKGTLTDSEFVSSPVRRIF-NQLVDGGKVIGDRDHGRETPV 258
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
D+ R HP+R YTCW A NYG RID++LC +Q F ++
Sbjct: 259 LVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLC-------DRSMQDW-FSASNI 310
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
E L GSDH PVY L + + S + L
Sbjct: 311 QE------------------------GLMGSDHCPVYAELKD-----KVSLDGIEVNMLD 341
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG- 291
I+ + T + KRE + + SG L E +D RS N Y SG
Sbjct: 342 ILN-PKGTFENGQRKREYSP-ADTLPLSGRLIPEFCQRRSIKDMLFQ-QRSQNGYQGSGN 398
Query: 292 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS-PFHVDRAR----K 346
GV S Q++ + + + + + +S T N P D K
Sbjct: 399 AAGGVGIPISAQKASSDISLSAIGRSNIPSPSSTPIATSAEPNTPKRPQKADDGTTSRPK 458
Query: 347 KAKKSQ--------LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
+ K+S+ GQ +LK FF ++ + T S + N + +S + E
Sbjct: 459 RLKRSESSTTTTKAKGQKTLKGFFGPKT------TSCTTVASADDENDHSKSSATAEGGS 512
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVC----SHDQDEKKGKRFLDKERNNVALLEWRR 454
+ K P C H+ +G S ++D+D+ R D N + W +
Sbjct: 513 PQKGTAIKPPCPSGDCCDHQENGCQQSQTAGPPAYDRDDDNSGRVHDPIANKES---WSK 569
Query: 455 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFK 510
+ + P C GH EPC++ V KK G GR F++C+R GP + + C F
Sbjct: 570 L--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDTFI 627
Query: 511 WA 512
W+
Sbjct: 628 WS 629
>gi|194228591|ref|XP_001494126.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Equus
caballus]
Length = 512
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRALDSEGRALLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLAFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F + R W S+L G
Sbjct: 175 RLLQTRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLSNPGCQ 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW +GA NYG R+D++L
Sbjct: 235 AESHVGPFIDSYRCFQPKQEGAFTCWSVVSGARPLNYGCRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 280 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L++ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVRLE 346
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 458 SPMPLCGGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPASRCNFFLWS 509
>gi|109499818|ref|XP_223499.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
gi|109500734|ref|XP_001059968.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
Length = 516
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+ +F++++L +DSEGR ++T H L NVY P A + R+ FK++F+
Sbjct: 115 MNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYP 234
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 235 AGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
D++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILGFLVPCE 346
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
>gi|149047282|gb|EDL99951.1| rCG36041 [Rattus norvegicus]
Length = 485
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+ +F++++L +DSEGR ++T H L NVY P A + R+ FK++F+
Sbjct: 115 MNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYP 234
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 235 AGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
D++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILGFLVPCE 346
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGP 483
+ +PLC GH+EPCV R+VKKPGP
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGP 484
>gi|296235588|ref|XP_002762961.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Callithrix
jacchus]
Length = 518
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 124/269 (46%), Gaps = 53/269 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID D+ F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P PS
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPS 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKREVAKQG 254
L +R+LP G Q ++ L+ KQG
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVP---LKQG 349
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
IPLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 466 IPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|384246641|gb|EIE20130.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 87/148 (58%), Gaps = 15/148 (10%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFL 64
FS++EL ++DSEGR V+TDHG F+L NVYGP +E++ R FKL+F+ L R + L
Sbjct: 63 FSQEELERLDSEGRVVMTDHGAFVLVNVYGPAISTEESAEERYAFKLRFYEGLLHRIQTL 122
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
GR + ++GDLNI+ A ID CD GP F R +L +GG F D
Sbjct: 123 RASGRCVILLGDLNISLAPIDSCDPGPIDAFTSRTDRRLLTRLLTSNGGPFLD------- 175
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHIL 150
AYTCW + +GA NYGTRID IL
Sbjct: 176 ----AYTCWSTASGARINNYGTRIDLIL 199
>gi|431914762|gb|ELK15800.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Pteropus alecto]
Length = 515
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 119/261 (45%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++ F+++EL +DSEGR ++T H L NVY P D R+ FK++F+
Sbjct: 116 MDAFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHVDPGKPERLAFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 HLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P+++ A+TCW TGA NYG+R+D++L
Sbjct: 236 AGSHVGPFIDSYRCFQPKQKGAFTCWSVVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L +R+LP G Q ++ L+
Sbjct: 324 LCTRFLPEFAGTQLKILHFLV 344
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC+GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCRGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
>gi|379047284|gb|AEI30104.2| apurinic/apyrimidinic endonuclease, partial [Camelus dromedarius]
Length = 488
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 119/261 (45%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAANLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
GSF D +R P+++ A+TC + +GA NYG+R+D++L
Sbjct: 236 AGSYTGSFIDSYRCFQPKQKGAFTCRSTVSGARHLNYGSRLDYVL-------------GD 282
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ + L+ + GSDH PV L V +P P
Sbjct: 283 RTLVIXTFQASFLLP------------------EVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L +R+LP G Q T++ L+
Sbjct: 324 LCTRFLPEFAGTQLTILRFLV 344
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRF 489
+ +PLC+GH+EPCV R VKKPGP GR F
Sbjct: 460 SPMPLCEGHREPCVMRTVKKPGPNLGRHF 488
>gi|320036533|gb|EFW18472.1| DNA lyase [Coccidioides posadasii str. Silveira]
Length = 600
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 204/540 (37%), Gaps = 127/540 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R F+L F + L R L+ G+R+ V
Sbjct: 137 LDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIRNLIFLGKRVVVA 194
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESG------------GS 112
GDLNI+ AID A +F + RI F + LVE G
Sbjct: 195 GDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGGRVSHIEGVDKKDAV 253
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ RS P R YTCW A N+G RID+ILC+
Sbjct: 254 LWDMCRSFFPARSGMYTCWEQRINARPGNFGARIDYILCS-------------------- 293
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
+D K W + L GSDH PVY E +
Sbjct: 294 ------LDMKDWMS------IADIQEGLMGSDHCPVYAIFKENVD--------------- 326
Query: 233 IIRGVQQTLVSVL---MKREVAKQGKS---CKFSGSLPAESNSTGDTEDCSENVDRSLNN 286
+ G Q V+++ + E A+ S SG L E N + D
Sbjct: 327 -LHGDQIDFVNLMNPSVDFEAAENSLSRSHLPLSGRLIPEFNRRRNIRD----------- 374
Query: 287 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 346
+ SS+ S GE + + N ++ S+ I R +K
Sbjct: 375 -------MFLRQSSTQNLSPGEINQNATSMSSMTNKGRPISLDLERSHEIDERDPKRRKK 427
Query: 347 KAKKSQL---GQLSLKSFFH------KRSNVSHDDNNSITDTSLN--VNNSVTDTSLSQE 395
+ L Q S++ FF+ K+SN++ D +I D+ N N+S S
Sbjct: 428 EPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLAK-DCEAINDSVPNERKNDSGPGHRTSGI 486
Query: 396 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 455
P+++ P T + + V S + + D D+E W +I
Sbjct: 487 SPPDANPDFEADPQTSQESTT--VSAVPSRIVA---DINVMSSIPDQE-------SWNKI 534
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
+ P C+GH+EPCV V KKPG GR F++C R GP+ N E C F W
Sbjct: 535 --FKKRPPPRCEGHEEPCVRLVTKKPGINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|62751813|ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
gi|73921675|sp|Q5E9N9.1|APEX2_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|59858127|gb|AAX08898.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 514
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|440907085|gb|ELR57275.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos grunniens mutus]
Length = 514
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|296470685|tpg|DAA12800.1| TPA: DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
Length = 514
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|325180868|emb|CCA15278.1| DNA(apurinic or apyrimidinic site) lyase putative [Albugo laibachii
Nc14]
Length = 475
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 30/227 (13%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L +++SEGR VITDHG FIL NVY P +E+ R+++K+ F +L +R + L +R+
Sbjct: 117 LSELESEGRSVITDHGAFILINVYCPAIRNEE--RLEYKIAFHELLTRRIQTLRKASKRV 174
Query: 72 FVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
+VGDLN+A ID C+ +F + R W L+ S D++R +P++++A
Sbjct: 175 VLVGDLNVASKRIDHCEPKASEFGEFEAHPCRKWLHR-LISSPAPLRDIYRKLYPDKKKA 233
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
+TCW + T A + NYGTRID+IL Q L +F + E +W
Sbjct: 234 FTCWNTATMARKNNYGTRIDYILVDEKL--QDSVLSCRSFAFKSILE--------KWL-- 281
Query: 188 NAPRWKGGMSTRLE----GSDHAPVYMCLGEVPEIPQHSTPSLASRY 230
++ RL+ GSDH PV+ + + + TP+LAS++
Sbjct: 282 -------TLAIRLDPERLGSDHCPVFAEIDILFQTACTLTPALASKH 321
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 430 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 489
D+DE KR D+ +W+++ + P+C + +P VAR V K GRRF
Sbjct: 395 DRDEIPKKRKQDQT-------DWKKVLTGQISPTPMCYCN-QPSVARAVVKKNENCGRRF 446
Query: 490 FVCARAEGPASNPEANCGYFKWAFSKSK 517
+VC + G A +P A C YF+WA S K
Sbjct: 447 YVCTKPAGEAGDPNARCNYFQWANSSRK 474
>gi|444520956|gb|ELV13065.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Tupaia chinensis]
Length = 517
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 117/261 (44%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
++ F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDAFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLVNVYCPHADPGKPERLAFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
H+LQ R E LL G + ++GDLN A ID +A F ++ R W +L
Sbjct: 176 HLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWNAATLECFEEDPGRKWMDRLLSNLSCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
GSF D +R PE+ A+TCW +GA NYG+RID++L L
Sbjct: 236 ADSHIGSFVDTYRCFQPEQEGAFTCWSVVSGARHLNYGSRIDYVL-------GDRTLVRD 288
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
F + L+ + GSDH PV L V +P PS
Sbjct: 289 TF------QASFLLP------------------EVMGSDHCPVGAVL-NVSCVPAKQCPS 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L +R+LP G Q + L+
Sbjct: 324 LCTRFLPEFAGTQLKIFPFLV 344
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 386 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 445
S +S Q+ + HS+ P + L + + + +E K ++ R
Sbjct: 382 SQVGSSRGQKNLTSYFRHSSSCPQVSPDLELPSLPLMGALITPKTSEETVAKVVEEQARV 441
Query: 446 NVALLEWRRIQQLMETSI-------PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
+ A E + I+ L S+ PLC GH+EPCV R VKKPGP GRRF+VCAR +GP
Sbjct: 442 SGAKDE-KEIRTLFWKSVLSGPLPTPLCGGHREPCVMRTVKKPGPNLGRRFYVCARPQGP 500
Query: 499 ASNPEANCGYFKW 511
S+P + C +F W
Sbjct: 501 PSDPLSRCNFFLW 513
>gi|358393553|gb|EHK42954.1| DNA lyase [Trichoderma atroviride IMI 206040]
Length = 598
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 129/536 (24%), Positives = 203/536 (37%), Gaps = 107/536 (19%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DELL +DSEGRCVI + F+L VY P + D R+ F++++ L R L+ +G+
Sbjct: 129 DELL-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVDFRMEYLQALDARVRNLISEGK 185
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR-------SMLVESGG--------- 111
++ ++GDLN++ + D + K I W + L+ G
Sbjct: 186 QVVLMGDLNVSRSESDSTNVAETLRKEGLSIEEWMNVPSRRLFNHLIYGGTVQGDRDEGR 245
Query: 112 ---SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+ +D+ R HP R TCW + N G+RID++LC+ N +
Sbjct: 246 EQPALWDLCREFHPTREGMNTCWDTKRNTRPANNGSRIDYVLCS-------------NGL 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA- 227
E DI L GSDH PVY + +V P LA
Sbjct: 293 KDWFTEADI-------------------QEGLMGSDHCPVYATIADVVTTDTEQVPLLAV 333
Query: 228 SRYLPIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTEDCSENVDRS--- 283
++ Q L MK + K +F T + SE +R+
Sbjct: 334 MNPTSMVTRDGQRLREWHMKDVLPLSAKLIPEFDRRQSIRDMFTKSADQASELSNRAEYR 393
Query: 284 --LNNYCDSGILQGVYCSSSNQESEGEFTKT-IENCRDSANVASHSTITQGSSNHISPFH 340
+++ DS L+ + S S + ++ D ++ S + S
Sbjct: 394 LGMSDASDSSKLKPLTESRSEAPPRAKRAAGFVDPLSDGGSLKRSKKSNGAMSVNPSLMA 453
Query: 341 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 400
AR S GQ +L+ FF S+++ + NN D S S ES
Sbjct: 454 EKNARSTTTVSTKGQKTLQGFFKPVSSLAANRNNDGADWSGKSPGS------------ES 501
Query: 401 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 460
N P++ L + + Q ++ + L RR+
Sbjct: 502 QAKQNPRPIS--------LQTETNQIFDPVQAKESWSKLLG-----------RRV----- 537
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
+P C+ H EPC++ V KKPG G F++CAR GP+ E + CG F W+
Sbjct: 538 --LPRCE-HNEPCISLVTKKPGVNCGASFYICARPLGPSGEKEKDSEWRCGTFIWS 590
>gi|406868502|gb|EKD21539.1| DNA lyase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 633
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 223/557 (40%), Gaps = 122/557 (21%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L Y P + D R +F++ F + ++ R L+ G+R+F
Sbjct: 132 LDSEGRCVILEFPAFVLIGTYCPA--NRDESRDEFRIGFLNAVEARVRNLVAAGKRVFWT 189
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGSF----------- 113
GDLNI ID +AG K R +LV+ G F
Sbjct: 190 GDLNIIREEIDTANAGEQLRKQGITVEEYLSTPARRMLNQLLVD-GKVFGERDEGREKPI 248
Query: 114 -FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ RS HP R +TCW A N+G+RID++LC+
Sbjct: 249 MWDICRSFHPNRLGMFTCWEQKINARPGNFGSRIDYVLCSQ------------------- 289
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ---HSTPSLASR 229
D+K W + + L GSDH PVY L E EI H ++S
Sbjct: 290 -------DWKDW------FCESNIQEGLMGSDHCPVYAVLKEKVEIEGKEVHVRDIMSSG 336
Query: 230 YLPIIRGVQQ-------------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 276
G++Q L+ R + + K SL A NS T+
Sbjct: 337 MFK--DGLRQREWSAKDLLPMSARLIPEFNHRRSIRDMFTKK--SSLTASDNSLS-TQGA 391
Query: 277 SENVDRSLNNYCDSGIL--QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 334
+ V +L D G+L +G S S +++ E T+ + + V+ ++I +
Sbjct: 392 QDEVGTALP---DRGLLTSKGAMASVSTLQAKPEVTEDLTA--VTTTVSQTTSIQSSAKP 446
Query: 335 HISPFHVDRARKKAK--------------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 380
P R + + +S GQ SL FF K N+SI D
Sbjct: 447 PKRPIESPTTRPQKRGKPSTSSKSTTSKAQSGKGQSSLMGFF-KSKQPQDSQNSSIIDA- 504
Query: 381 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 440
S T T +S + +PES + P + + ++ ++ + D+K
Sbjct: 505 ----KSDTATMISIDTLPESSDLAP--PAKEEPPATQSSENLSPNLAFNPADQK------ 552
Query: 441 DKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 499
+ +A+ + W ++ L + +P C+ H +PC++ + KK G GR F++C R GP+
Sbjct: 553 -SVHDPIAVKDSWSKL--LGKRVVPRCE-HDDPCISHITKKGGENCGRSFYMCPRPLGPS 608
Query: 500 SNPEAN----CGYFKWA 512
E N CG F W+
Sbjct: 609 GKKEKNTEWRCGTFIWS 625
>gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 131/553 (23%), Positives = 210/553 (37%), Gaps = 131/553 (23%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRC+I + F+LF VY P + D RI+F+ F L+ R L+ G+
Sbjct: 124 DEAL-LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLVAAGK 180
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
++ + GDLNI + +D + K + W +L +
Sbjct: 181 QVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAR 240
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
G +D+ R HP RR +TCW + N G+RID+ILC+ D FV
Sbjct: 241 EDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFV 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
++ E L GSDH PVY + +
Sbjct: 293 DSNIQEG------------------------LMGSDHCPVYATMRD-------------- 314
Query: 229 RYLPIIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSE 278
+++G ++T L +L + + G+ + S L E + + D
Sbjct: 315 ---KVVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFT 371
Query: 279 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA-------SHSTITQG 331
N ++ + D G G + + E + T+ + +V ++Q
Sbjct: 372 N--KAAHASFDRGNKTG--SGARDGEDMTQLGTTMPRLQSEGSVGVERERERERERVSQ- 426
Query: 332 SSNHISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 383
+ H P V A KK+K K GQ +L+ FF +S + V
Sbjct: 427 NKRHAGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAGPCQV 486
Query: 384 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 443
L+ V S + P + +V + ++ GK F E
Sbjct: 487 PGRAQTPPLTTRTV------SRQTPTSSQMVTVKPV-----------EENSSGKVFDPIE 529
Query: 444 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 503
A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+ + E
Sbjct: 530 ----AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPSGDKE 582
Query: 504 AN----CGYFKWA 512
+ CG F W+
Sbjct: 583 RDTEWRCGTFIWS 595
>gi|61554419|gb|AAX46554.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 407
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
>gi|390600243|gb|EIN09638.1| DNase I-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 567
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 58/263 (22%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
E + +L+ +DSEGR ++ D G F+L NVY P S+ R+ FK+ + +L++R L
Sbjct: 113 EGNTPSDLIGLDSEGRALMVDFGLFVLINVYCPNETSD--ARLPFKMNYHLMLEERVREL 170
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS 119
+ +GR + VVGD+NI +D CD F + R WF + L + G DV R
Sbjct: 171 VGEGREVMVVGDMNICATPLDHCDGHLPSNAATFWDHPARAWFHNWL-DPNGLMIDVLRR 229
Query: 120 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 179
PER+ YT W G + NYGTR+D+IL
Sbjct: 230 FWPERKGMYTVWNQKIGGRETNYGTRVDYILVT--------------------------- 262
Query: 180 DYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHS--------------TP 224
PG P K + ++GSDH P+++ L ++ +P TP
Sbjct: 263 ------PGLLPWVKAADIEASVKGSDHCPIWVDLHDI--LPGQDIKLRDSLKMNQFRVTP 314
Query: 225 SLASRYLPIIRGVQQTLVSVLMK 247
LA++Y P G Q L S K
Sbjct: 315 RLAAKYWPEFSGKQTLLSSFFGK 337
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 456 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPE 503
Q +P C H E V KPGP G+ F++C+R GP NPE
Sbjct: 486 QMFAPIPVPRCTVHNELAKEWTVNKPGPNKGKTFYLCSRPVGPGYDKGRGERLREEVNPE 545
Query: 504 ANCGYFKWA 512
C +FKWA
Sbjct: 546 YRCNFFKWA 554
>gi|392864132|gb|EAS35062.2| exodeoxyribonuclease III (xth) [Coccidioides immitis RS]
Length = 600
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 144/561 (25%), Positives = 204/561 (36%), Gaps = 147/561 (26%)
Query: 5 EDFSKDELLK--IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
E S EL +DSEGRCVI + F+L VY P + D R F+L F + L R
Sbjct: 125 EQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIR 182
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESG-- 110
L+ G+R+ V GDLNI+ ID A +F + RI F + LVE G
Sbjct: 183 NLISLGKRVVVAGDLNISRDEIDSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGGRV 241
Query: 111 ----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
+D+ RS P R YTCW A N+G RID+ILC+
Sbjct: 242 SHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARIDYILCS-------- 293
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 220
+D K W + L GSDH PVY E +
Sbjct: 294 ------------------LDMKDWMS------IADIQEGLMGSDHCPVYAIFKENVD--- 326
Query: 221 HSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CKFSGSLPAESNSTGDTE 274
+ G Q V+++ + E A S SG L E N +
Sbjct: 327 -------------LHGDQIDFVNLMNPSVDFEAADNSLSRSHLPLSGRLIPEFNRRRNIR 373
Query: 275 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 334
D + SS+ S GE + + N ++ S+
Sbjct: 374 D------------------MFLRQSSTQNPSPGEINQNATSMSRMTNKGRPISLDLERSH 415
Query: 335 HISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVSHD---DNNSITDTSLN 382
I R +K+ L Q S++ FF K+SN++ D N+S+ + N
Sbjct: 416 EIDERDPKRRKKEPIAGVLPTTSQKSIRGFFSPRQPRLKQSNLAKDCEAINDSVPNERKN 475
Query: 383 VNN--------SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK 434
+ S D S E P++ S + + + G+N +Q+
Sbjct: 476 DSGPGHRTSGISPPDASPDFEADPQTSQESTTV----SAVPSRIVAGINVMSSIPEQE-- 529
Query: 435 KGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
W +I + P C+GH+EPCV V KKPG GR F++C R
Sbjct: 530 ----------------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKPGINRGRSFWICPR 571
Query: 495 AEGPASNPEAN----CGYFKW 511
GP+ N E C F W
Sbjct: 572 PLGPSGNKETGTQWRCPTFIW 592
>gi|307105550|gb|EFN53799.1| hypothetical protein CHLNCDRAFT_136485 [Chlorella variabilis]
Length = 1072
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 51/200 (25%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWE 62
+ ++ +EL ++D EGR +TDHG F+LFN+YGP ++ R+Q+KL+FF L+ RW
Sbjct: 133 DQYTVEELAELDGEGRVTVTDHGAFVLFNIYGPAITKQEVAEDRMQYKLRFFSALELRWR 192
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--RIWFRSML-------------- 106
LL QGR + VGDLNI P +D A F + R+W R +L
Sbjct: 193 DLLRQGRAVVAVGDLNICPTPLDYPVADLQFFRPSRPDRLWLRRLLHGSTTTGGSNSGGG 252
Query: 107 -------------VESGGS--------------------FFDVFRSKHPERREAYTCWPS 133
S G+ D FR+ HP R+ A+TCW +
Sbjct: 253 GGDQSPPAAAAAAAGSNGNGVAGIYGAGASSSNGGSGGILVDTFRAFHPTRQNAFTCWST 312
Query: 134 NTGAEQFNYGTRIDHILCAG 153
T A NYG+RID +L AG
Sbjct: 313 ATSARVNNYGSRIDLVLTAG 332
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGP----TFGRRFFVCARAEGPASNPEANCG 507
WR IQQ + +P C GH+EP V + V K GP GR F+ CAR +GP P C
Sbjct: 564 WRTIQQRFQ--VPQCPGHREPAVLKKVNKSGPNKGNAAGRYFYTCARPDGP--KPHGKCE 619
Query: 508 YFK 510
+FK
Sbjct: 620 FFK 622
>gi|359324281|ref|XP_003640323.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Canis
lupus familiaris]
Length = 517
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD+ R+ FK++F+
Sbjct: 118 MDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKMRFY 177
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 178 RLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 237
Query: 111 -GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 238 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL--------------- 282
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 283 -------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 325
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L +R+LP G Q ++ L+
Sbjct: 326 LCTRFLPEFAGTQLKILRFLV 346
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 465 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 514
>gi|29501194|dbj|BAC67539.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 136/557 (24%), Positives = 209/557 (37%), Gaps = 139/557 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRC+I + F+LF VY P + D RI+F+ F L+ R L+ G+
Sbjct: 124 DEAL-LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLIAAGK 180
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
++ + GDLNI + +D + K + W +L +
Sbjct: 181 QVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAR 240
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
G +D+ R HP RR +TCW + N G+RID+ILC+ D FV
Sbjct: 241 EDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFV 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
++ E L GSDH PVY + +
Sbjct: 293 DSNIQEG------------------------LMGSDHCPVYATMRD-------------- 314
Query: 229 RYLPIIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSE 278
+++G ++T L +L + + G+ + S L E + + D
Sbjct: 315 ---KVVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFT 371
Query: 279 N------VDRSLNNYCDSGILQG-----VYCSSSNQESEGEFTKTIENCRDSANVASHST 327
N DR N SG G + + +SEG E R+ V+ +
Sbjct: 372 NKAAHASFDR--GNKTGSGARDGEDMTQLGTAMPRLQSEGSVGVERERERERERVSQN-- 427
Query: 328 ITQGSSNHISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
H P V A KK+K K GQ +L+ FF +S +
Sbjct: 428 -----KRHAGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAG 482
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 439
V L+ V S + P + +V + ++ GK F
Sbjct: 483 PCQVPGRAQTPPLTTRAV------SRQTPTSSQMVTVKPV-----------EENSSGKVF 525
Query: 440 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 499
E A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+
Sbjct: 526 DPIE----AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPS 578
Query: 500 SNPEAN----CGYFKWA 512
+ E + CG F W+
Sbjct: 579 GDKERDTEWRCGTFIWS 595
>gi|298706356|emb|CBJ29365.1| potential endonuclease [Ectocarpus siliculosus]
Length = 696
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP---------RADSEDTVRIQFKLQF 53
G S D L +DSEGR ++TDHGHF+LFNVY P + +ED R FK F
Sbjct: 130 GERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAPCVSSSSDDEKEKTED--RRAFKRDF 187
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESGG 111
L+ R + +GR + +VGDLN + +D D F + + W R ML
Sbjct: 188 LATLEARIFEIRSRGRGVVLVGDLNACASQLDHGFTMTDSEFYASNWSKWIRGMLGLGSP 247
Query: 112 S---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D FR HP+R+ A+TCW + TGA NYGTRID+I+ +F
Sbjct: 248 EPPRLVDCFRHLHPDRKSAFTCWNTQTGARDNNYGTRIDYIIAG------------TDFA 295
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 208
+ CDI+ D+ GSDH PV
Sbjct: 296 DRALRACDIMPDFL-------------------GSDHCPV 316
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP-ASNPEANCGYFKW 511
S P C+ H EP + R V KPGP RRF+ CAR+ G ++ A C +F+W
Sbjct: 620 SAPTCE-HGEPSIQRTVLKPGPNHNRRFYTCARSAGNWPTDRNARCTFFQW 669
>gi|258573517|ref|XP_002540940.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
gi|237901206|gb|EEP75607.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
Length = 499
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 212/561 (37%), Gaps = 156/561 (27%)
Query: 3 GLEDFSKDELLK-----IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
G +F + ELL IDSEGRCVI + F+L VY P + D R F+ F + L
Sbjct: 35 GYPNFEQLELLSFDPKTIDSEGRCVILEFPAFVLLGVYCPA--NRDENRDAFRSDFLNAL 92
Query: 58 QKRWEFLLCQGRRIFVVGDLNI---------APAAIDRCDAGP-DFAKNEFRIWFRSMLV 107
R L+ G+R+ V+GDLN+ A AI +C +F + R+ F + LV
Sbjct: 93 DMRVRNLIAIGKRVIVMGDLNVSSDILDSAHAIEAIRKCKLTELEFLSSPPRLLF-NQLV 151
Query: 108 ESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ G D+ R+ HP R+ YTCW A NYG RID++LC+
Sbjct: 152 KGGKPGTHEIEQKPQVLLDLCRNFHPNRQGMYTCWEQRINARPGNYGARIDYVLCS---- 207
Query: 157 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216
D++ FV + E L GSDH PVY + +
Sbjct: 208 ---MDMEDW-FVWSDIQEG------------------------LMGSDHCPVYALIKDT- 238
Query: 217 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG--------KSCKFSGSLPAESN 268
RY R +++ ++ V G S SG L E +
Sbjct: 239 -----------VRY----RDADRSIWDIVNPPGVFHAGLRKQPAILTSLPLSGRLIPEFH 283
Query: 269 S--------TGDTEDCSENVDRSLNNYCDSGILQGVYCSSS--NQESEGEFTKTIENCRD 318
+ SE + R+ + + LQ + S N +G
Sbjct: 284 RRRSLKEMFQAKSTPASELMGRAPDLPHNPRSLQQLKSPDSAWNDGVKG----------- 332
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
A+ A + T + +N ISP V R+RK + D
Sbjct: 333 -ASTADYQTAKRTPANKISPRPVKRSRK-----------------------------LVD 362
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS--HDQDEKKG 436
TS N+ S Q+ + H +IP T S + + +N C ++ K
Sbjct: 363 TSSNL-------SKGQQTL---AHFMEQIPPTQISKAANYDVTLNDPGCVPLANKSSFKE 412
Query: 437 KRFLDKER--NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
+R + E + A W ++ + P C+GH EPC+ V KK GP GR F++C R
Sbjct: 413 RRTISTENTPDPAAKESWAKL--FTRKAPPRCEGHNEPCIVLVTKKAGPNCGRSFWICPR 470
Query: 495 AEGPASNPEAN----CGYFKW 511
GP+ + E C F W
Sbjct: 471 PLGPSGDKEIGTPWRCPTFIW 491
>gi|325094515|gb|EGC47825.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 636
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 141/547 (25%), Positives = 213/547 (38%), Gaps = 108/547 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F +VL R L G+R+ V
Sbjct: 142 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLAAMGKRVIVT 199
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI+ + ID A +F + R F + LV+ G
Sbjct: 200 GDLNISGSQIDSARALEGIRKGTLTDSEFVSSPVRRIF-NQLVDGGKVIGDRDDGRETPV 258
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
D+ R HP+R YTCW A NYG RID++LC +Q F ++
Sbjct: 259 LVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLC-------DRSMQDW-FSASNI 310
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
E L GSDH PVY L + + S + L
Sbjct: 311 QEG------------------------LMGSDHCPVYAELKD-----KVSLDGIEVNMLD 341
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG- 291
I+ + T + KRE + + SG L E +D RS N SG
Sbjct: 342 ILN-PKGTFENGQRKREYSP-ADTLPLSGRLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGN 398
Query: 292 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR------ 345
+ GV S Q++ + + + +N+ S S+ +S P RA+
Sbjct: 399 AVSGVAIPISAQKASSDISLSAIG---RSNIPSPSSTPIATSAE--PNTPKRAQKEDDGT 453
Query: 346 ----KKAKKSQ--------LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLS 393
K+ K+S+ GQ +LK FF ++ + TD S + N + +S +
Sbjct: 454 TSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKT------TSCTTDASADDENDHSKSSAT 507
Query: 394 QEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC----SHDQDEKKGKRFLDKERNNVAL 449
E + K P + C + +G S ++D+ R D N +
Sbjct: 508 AEGDSPQKGTAIKPPCSSGDCCDPQENGCQQSQTAGPPAYDRHNDNSGRVHDPIANKES- 566
Query: 450 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEAN 505
W ++ + P C GH EPC++ V KK G GR F++C+R GP + +
Sbjct: 567 --WSKL--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWR 622
Query: 506 CGYFKWA 512
C F W+
Sbjct: 623 CDTFIWS 629
>gi|301792507|ref|XP_002931219.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ailuropoda melanoleuca]
gi|281349729|gb|EFB25313.1| hypothetical protein PANDA_022064 [Ailuropoda melanoleuca]
Length = 516
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 120/262 (45%), Gaps = 50/262 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD+ R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADAGKPERLSFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 111 -GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
GS F D +R P++ A+TCW + +GA NYG+R+D++ L
Sbjct: 236 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYV------------LGDR 283
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
V D D R + GSDH PV L V +P P
Sbjct: 284 TLVI------DTFQDSFRLP-------------EVMGSDHCPVGAVL-SVSSMPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMK 247
L +R+LP G Q ++ L++
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVR 345
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 513
>gi|29420517|dbj|BAC66502.1| DNA lyase [Isaria tenuipes]
Length = 611
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 131/553 (23%), Positives = 210/553 (37%), Gaps = 127/553 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRC+I + F+LF +Y P + D RI+F+ F L+ R L+ G+
Sbjct: 124 DEAL-LDSEGRCLILEFPAFVLFGIYSPA--NRDESRIEFRQNFVEALEARIRNLITAGK 180
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF---------------RIWFRSMLV------E 108
+ + GDLNI + +D + K ++ F ++
Sbjct: 181 EVILTGDLNIIRSEMDSSNIAEGLRKEGMTMDEWQSMPTRRILNQLLFDGTVIGPRDKAR 240
Query: 109 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
G +D+ R HP RR +TCW + N G+RID+ILC+ D FV
Sbjct: 241 EDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFV 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
++ E L GSDH PVY + +
Sbjct: 293 DSNIQEG------------------------LMGSDHCPVYATMRDT------------- 315
Query: 229 RYLPIIRGVQQ-TLVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSE 278
+++G ++ L V+ + + GK + S L E + + D
Sbjct: 316 ----VVKGGKEIALAEVVNPTNMFRDGKRIRNWEQRDALALSAKLIPEFDRRRNIRDMFT 371
Query: 279 NVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST-----ITQGS 332
N ++ + D G + V + + G+ T S V ++Q
Sbjct: 372 N--KAAHASFDRGNKTRSVARDAEEMKQLGKTTMPRLQSEGSVGVEREREREREWVSQ-L 428
Query: 333 SNHISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 384
H P V A KK+K K GQ +L+ FF +S + D
Sbjct: 429 KRHAGPVQVGIPANKKSKGSSETKTKVAGGQTTLQGFFKPKSTTTAD------------- 475
Query: 385 NSVTDTSLSQE-EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 443
V L+ +VP + P+ + S+ + +++ GK F E
Sbjct: 476 --VQGGPLAGPCQVPGVPGRAQTPPLPASAASLQTPASWQTGTVKPVEEKSSGKVFDPIE 533
Query: 444 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 503
A W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ + E
Sbjct: 534 ----AKESWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDKE 586
Query: 504 AN----CGYFKWA 512
+ CG F W+
Sbjct: 587 RDTEWRCGTFIWS 599
>gi|344297470|ref|XP_003420421.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Loxodonta
africana]
Length = 516
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 119/264 (45%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK+ F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGQEKTLTLINVYCPHADPGKPERLAFKMHFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 RLLQIRAEALLEAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSVLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW +GA NYG+R+D++L
Sbjct: 236 AGAHIGPFIDSYRCFQPKKEGAFTCWSVVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRALVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPTKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q + L++ E
Sbjct: 324 LCTRFLPEFAGTQLKIRHFLIRLE 347
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 386 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD------EKKGKRF 439
S +S Q+ + S+ P + L GV + + +Q+ E + K
Sbjct: 382 SQAGSSRGQKNLMSYFQPSSSHPQASPDLELPSLMGVPVTPVTPEQEAAAKMVEVQAKAS 441
Query: 440 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 499
K V L W+ + + +PLC GH EPCV R VKKPGP GR F++CAR GP
Sbjct: 442 ETKYEKEVRTLCWKSVLA-GPSPMPLCWGHGEPCVIRTVKKPGPNLGRCFYICARPRGPP 500
Query: 500 SNPEANCGYFKW 511
++P A C +F W
Sbjct: 501 TDPSARCNFFLW 512
>gi|410988667|ref|XP_004000602.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Felis
catus]
Length = 514
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 50/262 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLINVYCPHADPGKPERLAFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+L+ R E LL G + ++GDLN A ID DA F ++ R W +L G
Sbjct: 176 SLLKIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSSLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 TGSHVGPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPAKECPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMK 247
L +R+LP G Q + L++
Sbjct: 324 LCTRFLPEFAGTQLKIRRFLVR 345
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
S+PLC+GH+EPCV R VKKPGP GR F+VCAR +GP ++P + C +F W+
Sbjct: 461 SMPLCRGHREPCVRRTVKKPGPNLGRHFYVCARPQGPPTDPSSRCNFFLWS 511
>gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
Length = 624
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 134/554 (24%), Positives = 216/554 (38%), Gaps = 112/554 (20%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 124 DEAL-LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALDARIRNLITAGK 180
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
++ + GDLNI + +D + K + W F ++ E
Sbjct: 181 QVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQLVFEGTVIGDRDTGR 240
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D V
Sbjct: 241 EHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS--------DGIKDWIV 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-------GEVPEIPQH 221
++ E L GSDH PVY + G + +
Sbjct: 293 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKNGTEMTLAEA 328
Query: 222 STPSLASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDT 273
PS +R +Q L+ +R ++ + K S +L G +
Sbjct: 329 MNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKASQTLLHPEKFGGQS 388
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSS 333
N D + +SG +SS ES F S ++ + +GS
Sbjct: 389 LQI-RNADMAAYTARNSGT-----TASSGAESTNCFGAAAPLV--SVGGTNNVNLQRGSQ 440
Query: 334 NHISPFHVDRA----RKKAK-----KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 384
P +A K+ K K++ GQ +L+ FF ++ V+ +NNS+T + V
Sbjct: 441 TKRRPDGPAQAAVPTNKRGKNSSDTKTKTGQTTLQGFFKPKT-VASLENNSVTSVAEQVP 499
Query: 385 NSVTDTSLSQEEVPESH--HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 442
+ +E P ++ + P S S SS+ + K ++
Sbjct: 500 AGSGRVPVRAQEAPLANGVRRQTRTPSPIMSGS--------SSITTKGLSPAKVFDPIEA 551
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
+ + W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ +
Sbjct: 552 KES------WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDK 602
Query: 503 EAN----CGYFKWA 512
E + CG F W+
Sbjct: 603 ERDTEWRCGTFIWS 616
>gi|348683853|gb|EGZ23668.1| hypothetical protein PHYSODRAFT_481346 [Phytophthora sojae]
Length = 476
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 118/254 (46%), Gaps = 59/254 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+++EGRCVITDH F+L N Y P S D R+++KLQF +L+ R L +R+ VV
Sbjct: 121 LEAEGRCVITDHQAFVLLNTYCPALASAD--RLEYKLQFHALLEDRVRALRRANKRVVVV 178
Query: 75 GDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSML-------------VESGGSF-- 113
GD+NIA ID CD G FA + R W + +SG F
Sbjct: 179 GDINIAHREIDHCDPDTHRADGSSFADHPCRRWMDGFVGKPEEQDCNFYSEPKSGYEFKM 238
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
D FR +P + +A+TCW + TGA Q NYGTRID+IL P Q V
Sbjct: 239 VDAFRHFYPTQTKAFTCWNTQTGARQTNYGTRIDYIL-VDPAFLQS------------VT 285
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEV---PEIPQHSTPSLASR 229
C I D RL GSDH PV + C E+ I + T +L+++
Sbjct: 286 ACSIEAD------------------RL-GSDHCPVVISCTVELETDSSINRGITAALSAK 326
Query: 230 YLPIIRGVQQTLVS 243
G QQ++ S
Sbjct: 327 NFVEFSGTQQSIKS 340
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 450 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 509
LEW+++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 404 LEWQQVLSGRPPPTPLCYC-GQPTVLRSVVKANENWGRKFYVCTKPAGERGNPDARCEFF 462
Query: 510 KWAFSKSKQK 519
KWA +K +K
Sbjct: 463 KWADNKGPKK 472
>gi|353237115|emb|CCA69095.1| related to APN2-AP endonuclease, exonuclease III homolog
[Piriformospora indica DSM 11827]
Length = 715
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 101/207 (48%), Gaps = 41/207 (19%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-GRR 70
LL++D EGR ++ D G F+L NVY ADS D VR +K+ F+++LQ+R L+ + GR
Sbjct: 96 LLELDKEGRALVLDFGMFVLINVYC-VADSAD-VRYHYKMNFYYLLQERVRILIEEEGRE 153
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERR 125
+ V+GDLN A ID +AG ++ F R W R + G D+ R + P R
Sbjct: 154 VIVLGDLNSTAAPIDHVEAGLPKYRDVFYEPLHRSWLRDW-ISPVGPLVDIVRERFPTRE 212
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
YTCW + A + NYGTRID IL P L Q V E DI
Sbjct: 213 GMYTCWNTKINAREGNYGTRIDLILIT-PGLRQ------------WVKEADI-------- 251
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCL 212
++GSDH PV++ L
Sbjct: 252 -----------QPSIKGSDHCPVFIDL 267
>gi|71004198|ref|XP_756765.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
gi|46095654|gb|EAK80887.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
Length = 663
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 16/176 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGRCV+ D G F+LFNVY P + R+++K+ ++ L +R L+ +GR++ +V
Sbjct: 132 LDEEGRCVLLDLGLFVLFNVYCPNETGPE--RLEYKMTYYQCLAERAHRLIQEGRQVMIV 189
Query: 75 GDLNIAPAAIDRCDA--------GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GD+NI ID CDA DF ++ R WF+S L G F DV R H +R++
Sbjct: 190 GDMNIIRDPIDHCDAEQSIKEHGWDDFHQHPARSWFQSFLAPH-GKFHDVGRMYHADRKK 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 180
+TCW + A NYG R+D+ L L + D+Q+ + + H C I ID
Sbjct: 249 MFTCWNTLIDARPANYGVRLDYTLATEGILPWIKGADIQADVYGSDH---CPIYID 301
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 63/167 (37%), Gaps = 23/167 (13%)
Query: 342 DRARKKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSV 387
D + K + SQ GQ L SFF K +VS D TS + N+V
Sbjct: 504 DSIKAKTRASQRGQTKLHSFFAKPKSLAPVATNETSQPIDVSSSDGMVAPKTSTS-GNTV 562
Query: 388 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 447
+TS H N D C ++E +E+ +
Sbjct: 563 DNTSTDPTRDVTKRHGPNVDEAEDAICDLNEFQATTPPTQPLPPNEQSAADRVGTS---- 618
Query: 448 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
L W I M PLC+ H EPC A V KPGP GR+F++C R
Sbjct: 619 --LAWGAIFSPMPA--PLCRNHSEPCRAWTVNKPGPNHGRKFWLCNR 661
>gi|240275156|gb|EER38671.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 636
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 135/542 (24%), Positives = 207/542 (38%), Gaps = 98/542 (18%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F +VL R L G+R+ V
Sbjct: 142 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLAAMGKRVIVT 199
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI+ + ID A +F + R F + LV+ G
Sbjct: 200 GDLNISGSQIDSARALEGVRKGTLTDSEFVSSPVRRIF-NQLVDGGKVIGDRDDGRETPV 258
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
D+ R HP+R YTCW A NYG RID++LC +Q F ++
Sbjct: 259 LVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLC-------DRSMQDW-FSASNI 310
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
E L GSDH PVY L + + S + L
Sbjct: 311 QE------------------------GLMGSDHCPVYAELKD-----KVSLDGIEVNMLD 341
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG- 291
I+ + T + KRE + + SG L E +D RS N SG
Sbjct: 342 ILN-PKGTFENGQRKREYSP-ADTLPLSGRLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGN 398
Query: 292 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS------------PF 339
+ GV S Q++ + + + + + +S T N P
Sbjct: 399 AVSGVAIPISAQKASSDISLSAIGRSNIPSPSSTPIATSAEPNTPKRPQKEDDGTTSRPK 458
Query: 340 HVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
+ R+ ++ GQ +LK FF ++ + T S + N + +S + E
Sbjct: 459 RLKRSESSTTTTKAKGQKTLKGFFGPKT------TSCTTVASADDENDHSKSSATAEGDS 512
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVC----SHDQDEKKGKRFLDKERNNVALLEWRR 454
+ K P + C + +G S ++D+D + D N + W +
Sbjct: 513 PQKGTAIKPPCSSGDCCDPQENGCQQSQTAGPPAYDRDNDNSGKVHDPIANKES---WSK 569
Query: 455 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFK 510
+ + P C GH EPC++ V KK G GR F++C+R GP + + C F
Sbjct: 570 L--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDTFI 627
Query: 511 WA 512
W+
Sbjct: 628 WS 629
>gi|388855206|emb|CCF51100.1| related to APN2-AP endonuclease, exonuclease III homolog [Ustilago
hordei]
Length = 760
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 20/178 (11%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGRCV+ D G F+LFNVY P + R+++K+ ++ L +R L+ GR++ +V
Sbjct: 132 LDEEGRCVVLDLGLFVLFNVYCPNETGPE--RLKYKMTYYQCLAERAHRLIQSGRQVMIV 189
Query: 75 GDLNIAPAAIDRCDAGPD----------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
GD+NI ID CD P+ F ++ R WF+S L G F DV R HP+R
Sbjct: 190 GDMNIIRDPIDHCD--PEQSMKEHGWEHFHQHPARSWFQSFLAPQG-KFHDVGRMYHPDR 246
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 180
R+ +TCW + A NYG R+D+ L L + D+Q+ + + H C + +D
Sbjct: 247 RKMFTCWNTLIDARPANYGVRLDYTLVTEGLLPWIKGADIQADVYGSDH---CPVYVD 301
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 47/197 (23%)
Query: 342 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 401
+ ++ K+ S GQ SLK FF K ++ S + T T+ + S+ L++ + P S
Sbjct: 512 ETSKGKSAASLKGQTSLKGFFAKPTSSS-----TATPTASSTKTSI---DLAEADEPPSQ 563
Query: 402 HHSNKIPVTDYSCSVHELHG-----------------VNSSVCSHDQDEKKGKRFLDKER 444
S +I + S H+L + S+ S +E KR
Sbjct: 564 PKSIEITIVTDS---HQLEAHPSYSQQGEEEVSNQDLIESATESQAPEESAAKRV----- 615
Query: 445 NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----- 499
A L W I T PLC+ H E C A V KPGP GR+F++C+R GP
Sbjct: 616 --GAFLAWGAI--FSPTPAPLCRNHSEACRAWTVNKPGPNHGRKFWLCSRPVGPGYEKSG 671
Query: 500 -----SNPEANCGYFKW 511
NPE C +F W
Sbjct: 672 RAKGDVNPEYRCNFFLW 688
>gi|16904254|gb|AAL30835.1|AF440398_3 DNA lyase-like protein [Zymoseptoria tritici]
Length = 594
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 128/539 (23%), Positives = 196/539 (36%), Gaps = 128/539 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 134 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 191
Query: 75 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 113
GDLN+ ID R D R F +L + G
Sbjct: 192 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGRDAGVL 251
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D R HP RR YT W + A N G+RID +L A + + V
Sbjct: 252 WDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVA-------------DVMQSWVK 298
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP----------EI--PQH 221
+ +I L GSDH PVY +V EI P
Sbjct: 299 DANI-------------------QEGLLGSDHCPVYADFHDVVADDGGNVALLEIMNPPG 339
Query: 222 STPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 278
STP+ +++ +P R ++ + +K+ + Q + A++N + D S
Sbjct: 340 STPAFSAKRMPEFDKRRSIKSMFAAPPVKKITSSQLERTPSGIDAAAQANVP--SADISP 397
Query: 279 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 338
D++ + D A + + S P
Sbjct: 398 PEDKAAASQSDE--------------------------------ARPPSKRKASIPSKEP 425
Query: 339 FHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 397
+ + GQ SLK FF K S V D + + L++ + + + +
Sbjct: 426 LPSKKQKDTKVAPSRGQQSLKGFFSSKASPVKPDLKSQESSQKLSIASPPAEVAFPPPQS 485
Query: 398 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 457
P + S + P S S V + + S ++ ++ W +
Sbjct: 486 PSTTFPSQEPPSPIASAS-PTADQVATQIASAERSQR----------------SWGAL-- 526
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
+ PLC+GH+EPC KK G GR F++CAR GP+ E CG F WA
Sbjct: 527 FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 585
>gi|405960123|gb|EKC26070.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Crassostrea gigas]
Length = 527
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 120/282 (42%), Gaps = 71/282 (25%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFF 54
+ +FS DEL +D+EGR VIT H + NVY PR D + R+ +KL+FF
Sbjct: 103 VSEFSSDELEALDAEGRAVITKHKIRKHDGVEAELAIINVYCPRVDPDREDRLLYKLRFF 162
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-DFAKNEFRIWFRSML------- 106
+LQ R E LL G + V+GD+N+ +IDR + R+W +
Sbjct: 163 ALLQTRAEALLQSGCNVIVLGDMNVKHKSIDRSEEDEVGTVTTPSRVWVNQFVWDKDQDP 222
Query: 107 ----VES------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
VE+ GG F D FR +P++ AYT W + T A + NYG R+D+I
Sbjct: 223 SIAAVENKEDFAGTTSSVRGGLFVDSFRYFYPDQTGAYTNWCTLTSARETNYGRRLDYIF 282
Query: 151 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV-- 208
+ + +C IL D +EGSDH PV
Sbjct: 283 T------------NVELAQSDLKDCVILAD-------------------VEGSDHCPVKA 311
Query: 209 -YMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
YM I P L ++++P G Q L S MKRE
Sbjct: 312 EYM----AEFISAEKCPPLCTKHMPEFCGKQIKLSSFFMKRE 349
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 465 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 517
LCKGH+E CV R VKKPGP G++FFVCAR EG ++NPEA C +FKW K K
Sbjct: 475 LCKGHQEACVLRTVKKPGPNKGKQFFVCARGEGHSTNPEARCDFFKWVDYKKK 527
>gi|145346298|ref|XP_001417629.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577856|gb|ABO95922.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 474
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 114/246 (46%), Gaps = 47/246 (19%)
Query: 14 KIDSEGRCVITDHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 67
+ID EGR + D G F+L VY P D + R FK F L+ R++ L +
Sbjct: 102 EIDGEGRALWVDFGEFVLCTVYVPAVFGDPAVDEKTAERAAFKRDFLSALEARYKSLRER 161
Query: 68 GRRIFVVGDLNIAPA-AIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
GR + + GD NIAP+ +DR D P+ +N R W + L +G + DVFR P
Sbjct: 162 GRNVILCGDWNIAPSWKLDRADEDPNAVEPRNPSRDWLAAQL--AGDAMVDVFREFFPTL 219
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 184
+A+TCW +GA+ NYG+RID+ LC D + KR
Sbjct: 220 GDAFTCWNVASGAQLSNYGSRIDYFLC------------------------DRAVTLKRV 255
Query: 185 KPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP---EIPQHSTPSLASRYLPIIRGVQQTL 241
+ G++ + EGSDHAPVY+ L E Q + PSLA L G Q T+
Sbjct: 256 R-------GVGVAQKFEGSDHAPVYLELEESMWRRRDSQQTPPSLAISML--YPGRQTTV 306
Query: 242 VSVLMK 247
S+ +
Sbjct: 307 DSIFAR 312
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 455 IQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFKW 511
+ + + P CK H E C R VKK P GR FF C R G +NP+ +CG+F W
Sbjct: 411 MNTFAKMAPPKCK-HGETCKVRTVKKKESPHCGRVFFCCPRPAGARTNPDCDCGFFLW 467
>gi|322696797|gb|EFY88584.1| DNA lyase [Metarhizium acridum CQMa 102]
Length = 634
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 125/568 (22%), Positives = 210/568 (36%), Gaps = 150/568 (26%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R++F+ FF L R L+ +G+ + +
Sbjct: 136 LDSEGRCVILEFPAFVLLGVYCPA--NRDESRVEFRTSFFEALAARIRNLVAEGKEVILA 193
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSF 113
GDLN+ + +D + + K I W F ++ E
Sbjct: 194 GDLNVIRSEMDSTNVMENLRKENMTIDEWISLPTRRIFNQLIFEGSIVGDRDEGRETPVL 253
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R TCW + N G+RID+ILC+ F + ++
Sbjct: 254 WDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCSNGIKDW--------FTSANIQ 305
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG-------------------- 213
E L GSDH PV+ +
Sbjct: 306 EG------------------------LMGSDHCPVFATIAGTVASNGRQVSINDVMNPAG 341
Query: 214 ------EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF---SGSLP 264
V ++ Q L+++ +P +Q++ + K+ + + ++ S S
Sbjct: 342 MFENGTRVRDLAQKDILPLSAKLIPEF-DRRQSIRDMFFKKVTSAERRTTPHNSESSSFK 400
Query: 265 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 324
AE S D S +D +L + + +N+ + +++ + D +
Sbjct: 401 AEDTSQASDNDASSQIDNALQTVNTN--------TPTNKPAALPYSQPRKRSPDPIDPV- 451
Query: 325 HSTITQGSSNHISPFHVDRARKKA------KKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
P + R++ A +K GQ +LK FF S+V
Sbjct: 452 -------------PRQLKRSKSAADPIGSKQKISAGQTTLKGFFKPVSSV---------- 488
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV---------HELHGVNSSVCSH 429
L + D PE+ ++ +P T S S +E S +H
Sbjct: 489 --LPSPAVLAD--------PEAQSNATDLPATKTSPSTKGSSENLTSNEFMPPFSEQPAH 538
Query: 430 DQDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 488
D + D+ + + E W ++ L + +P C+ H EPC++ V KKPG GR
Sbjct: 539 DSLVDTSPKSPDRVFDPIQAKESWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNRGRS 595
Query: 489 FFVCARAEGPASNPEAN----CGYFKWA 512
F++C R GP+ E CG F W+
Sbjct: 596 FYICPRPLGPSGEKERGSEWRCGTFIWS 623
>gi|16904257|gb|AAL30837.1|AF440399_1 DNA lyase, partial [Zymoseptoria tritici]
Length = 491
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 130/553 (23%), Positives = 199/553 (35%), Gaps = 142/553 (25%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 75 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 113
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGRDAGVL 134
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D R HP RR YT W + A N G+RID +L A + + V
Sbjct: 135 WDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVA-------------DVMQSWVK 181
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------------MCLGEVPEIPQ 220
+ +I L GSDH PVY + L E+ P
Sbjct: 182 DANI-------------------QEGLLGSDHCPVYADFHDVVDDHGRNVSLLEIMNPPG 222
Query: 221 -------------HSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 264
STP+ +++ +P R ++ + +K+ + Q + SG P
Sbjct: 223 VFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKFASSQLERTP-SGIDP 281
Query: 265 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 324
A + + + D S + D++ + D A
Sbjct: 282 A-AQANAPSADISPHEDKAAASQSDE--------------------------------AR 308
Query: 325 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNV 383
T + S P + + GQ SLK FF K S V D + + ++
Sbjct: 309 PPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKGFFSSKASPVKPDLQSQESSQKTSI 368
Query: 384 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 443
+ + +L + P + S + P S S V + + S ++ ++
Sbjct: 369 TSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTADQVATQIASAERSQR--------- 418
Query: 444 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 503
W + + PLC+GH+EPC KK G GR F++CAR GP+ E
Sbjct: 419 -------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPSGEKE 469
Query: 504 AN----CGYFKWA 512
CG F WA
Sbjct: 470 KGTEWRCGTFIWA 482
>gi|398388271|ref|XP_003847597.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
gi|339467470|gb|EGP82573.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
Length = 608
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 130/553 (23%), Positives = 199/553 (35%), Gaps = 142/553 (25%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 134 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 191
Query: 75 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 113
GDLN+ ID R D R F +L + G
Sbjct: 192 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGRDAGVL 251
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D R HP RR YT W + A N G+RID +L A + + V
Sbjct: 252 WDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVA-------------DVMQSWVK 298
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------------MCLGEVPEIPQ 220
+ +I L GSDH PVY + L E+ P
Sbjct: 299 DANI-------------------QEGLLGSDHCPVYADFHDVVDDHGRNVSLLEIMNPPG 339
Query: 221 -------------HSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 264
STP+ +++ +P R ++ + +K+ + Q + SG P
Sbjct: 340 VFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKFASSQLERTP-SGIDP 398
Query: 265 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 324
A + + + D S + D++ + D A
Sbjct: 399 A-AQANAPSADISPHEDKAAASQSDE--------------------------------AR 425
Query: 325 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNV 383
T + S P + + GQ SLK FF K S V D + + ++
Sbjct: 426 PPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKGFFSSKASPVKPDLQSQESSQKTSI 485
Query: 384 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 443
+ + +L + P + S + P S S V + + S ++ ++
Sbjct: 486 TSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTADQVATQIASAERSQR--------- 535
Query: 444 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 503
W + + PLC+GH+EPC KK G GR F++CAR GP+ E
Sbjct: 536 -------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPSGEKE 586
Query: 504 AN----CGYFKWA 512
CG F WA
Sbjct: 587 KGTEWRCGTFIWA 599
>gi|295663072|ref|XP_002792089.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279264|gb|EEH34830.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
Length = 570
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 135/567 (23%), Positives = 208/567 (36%), Gaps = 136/567 (23%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
S + +DSEGRCVI + F+L VY P + D +R F+ F + + R L+
Sbjct: 72 LSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAVDARVRNLVD 129
Query: 67 QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS---- 112
G+R+ + GDLNI+ + ID A +F R F ++ SGG
Sbjct: 130 MGKRVILTGDLNISGSEIDSARALEEIRKSTTTNSEFVSAPVRRIFNQLV--SGGKVIGD 187
Query: 113 ---------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
D+ R HP+RR YTCW A NYG+RID++LC+ +
Sbjct: 188 RDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVLCS--------LIM 239
Query: 164 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP---- 219
F ++ E L GSDH PVY + + +
Sbjct: 240 RDWFCASNIQE------------------------GLMGSDHCPVYADIKDKVSLDNMEV 275
Query: 220 -------------------QHSTPS---LASRYLPIIRGVQQTLVSVLMKREVAKQGKSC 257
++ST L+ R +P Q+ + ++ R+ +K
Sbjct: 276 HILDILNPEGMFVNGERKREYSTADVLPLSGRLIPEF--CQRRSIKDMLFRQSSK----- 328
Query: 258 KFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCR 317
G+ + NS G T D N + G S++ G T
Sbjct: 329 ---GASQGDVNSAGVTNPPVPQKDTLGTN------ISGPASPSTSTTPWGPSTPKRSQQG 379
Query: 318 DSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSIT 377
D + + + S+ I+ AR K +K SLK FF + + S D+ + +
Sbjct: 380 DDGTTSRSKRLKRSQSSAIA-----TARTKGQK------SLKGFFGLKGSGSTADDQTNS 428
Query: 378 DTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGK 437
V+D + E E+ I YSC + G Q E
Sbjct: 429 P-------KVSDPAAVGNEQQEAAKSPLDI---TYSCPPGDGCGPEDDGTQGQQQETAEP 478
Query: 438 RFLDKERNNVALLE--------WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 489
+ N+ ++ W RI + P C GH EPC++ V KK G GR F
Sbjct: 479 LANGGDSNDDCIVHDPIANKELWSRI--FTKKPAPRCSGHHEPCISLVTKKAGINCGRSF 536
Query: 490 FVCARAEGPA----SNPEANCGYFKWA 512
++CAR GP+ + + C F W+
Sbjct: 537 WICARPLGPSGVKKTGDQWRCDTFIWS 563
>gi|443896515|dbj|GAC73859.1| apurinic/apyrimidinic endonuclease [Pseudozyma antarctica T-34]
Length = 729
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR V+ D G F+LFNVY P + R+++K+ ++ L +R L+ GR + +V
Sbjct: 132 LDDEGRAVVVDLGLFVLFNVYCPNETGPE--RLEYKMTYYQCLAERAHRLIAAGRDVMIV 189
Query: 75 GDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GD+NI ID CD G D F ++ R WF S L G F DV R HPERR+
Sbjct: 190 GDMNIIRDPIDHCDPEQSMRENGWDHFHQHPARAWFASFLAPQG-KFHDVGRMFHPERRK 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 180
+TCW + A NYG R+D+ L + L + D+Q + + H C I ID
Sbjct: 249 MFTCWNTLIDARPANYGVRLDYTLVSEGLLPWIKGADIQPDIYGSDH---CPIYID 301
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 317 RDSANVASHSTITQGSSNH-ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNS 375
RDS+ AS + GS ++ D AR K GQ +L++FF + ++ S S
Sbjct: 475 RDSSAEASPTKRNGGSPKRAVASKGKDGARGKPAAGLKGQTNLQAFFGRPASSSSTAAGS 534
Query: 376 ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 435
+ T+ S + + V S S D C + + + DQ
Sbjct: 535 DSGTTEQAPPSQPSDQV--DSVGASADAS------DAGCDMPDDDAIQEF---QDQASAS 583
Query: 436 GKRFLDKERNNV----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 491
R E++ A L W I PLC+ H E C A V KPGP GR+F++
Sbjct: 584 PPRPAGSEQSATDRIGASLAWGAI--FSPLPPPLCR-HSEACRAWTVNKPGPNHGRKFWL 640
Query: 492 CARAEGPA----------SNPEANCGYFKW 511
C+R GP NPE C +F W
Sbjct: 641 CSRPVGPGYEKTGRAKGDVNPEYRCNFFLW 670
>gi|322709548|gb|EFZ01124.1| DNA lyase [Metarhizium anisopliae ARSEF 23]
Length = 608
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 207/543 (38%), Gaps = 104/543 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R++F+ FF L R L+ +G+ + +
Sbjct: 114 LDSEGRCVILEFPAFVLLGVYCPA--NRDESRVEFRTSFFEALDVRIRNLVAEGKEVILT 171
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSF 113
GDLN+ + +D + + K I W F ++ E
Sbjct: 172 GDLNVIRSEVDSTNVMENLRKENMTIGEWISLPTRRIFNQLIFEGNIVGDRDEGRQTPVL 231
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R TCW + N G+RID+ILC+
Sbjct: 232 WDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCS--------------------- 270
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-GEVPEIPQHSTPSLASRYLP 232
+ + D+ W + L GSDH PV+ + G + S SL P
Sbjct: 271 --NGIRDWFTW---------ANIQEGLMGSDHCPVFATIAGTIAR--NGSQVSLNDVMNP 317
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC-------SENVDRSLN 285
T V L ++++ S L E + D +E N
Sbjct: 318 AGMFKNGTRVRELAQKDI------LPLSAKLIPEFDRRQSIRDMFSRKVTSAERSTTPHN 371
Query: 286 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI--SPFHVDR 343
+ S + +S N S T + D HS + S + I +P + R
Sbjct: 372 SGSSSFPAEDASQASDNDASSQAMVNTNTSSTDKPAALPHSQPRKRSPDPIDSTPRQLKR 431
Query: 344 ARKKA------KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSL---SQ 394
++ A +K GQ +LK FF +++ T++ + ++ +
Sbjct: 432 SKSGADPIGSRQKISAGQTTLKGFFKPV-------GSALPSTAVLADPEAQSSAAHLPAT 484
Query: 395 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WR 453
+ P + S+K+ ++ + E HD + + D+ + + E W
Sbjct: 485 KTPPSTKRSSDKLTSKEFVPPISEQP-------VHDSFIRTAPKSPDRVFDPIQAKESWS 537
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 509
++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ E CG F
Sbjct: 538 KL--LGKRVVPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKETGSEWRCGTF 594
Query: 510 KWA 512
W+
Sbjct: 595 IWS 597
>gi|159469514|ref|XP_001692908.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277710|gb|EDP03477.1| predicted protein [Chlamydomonas reinhardtii]
Length = 264
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFLLCQG 68
EL +D EGR VIT+HG +L NVYGP SE+ R FK+ FF LQ R + L G
Sbjct: 68 ELRALDGEGRVVITEHGALVLVNVYGPAITSEERAEERGAFKMTFFRALQHRLDGFLAAG 127
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER-REA 127
RR+ V+GD NI+PAA DR A P F P+R R+A
Sbjct: 128 RRLVVLGDFNISPAAADRAGATP-----------------------RTFEPHRPDRLRDA 164
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YTCW +++GA N+G+RID IL A
Sbjct: 165 YTCWNTSSGARVNNFGSRIDLILAA 189
>gi|316994995|gb|ADU79051.1| DNA lyase, partial [Zymoseptoria tritici]
Length = 492
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 199/533 (37%), Gaps = 102/533 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 75 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 113
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGREAGVL 134
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD------LQSHNF 167
+D R HP RR YT W + A N G+RID +L A D L +
Sbjct: 135 WDTTRGFHPARRGMYTHWDTKKNARPGNSGSRIDFVLVADVMQSWVKDANIQEGLLGSDH 194
Query: 168 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 227
+ + D++ D+ GG + LE + V+ E STP+ +
Sbjct: 195 CPVYADFHDVVADH------------GGNVSLLEIMNPPGVFENGERKVEWTLQSTPAFS 242
Query: 228 SRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 284
++ +P R ++ + +K+ + Q K + + A + + + D S D++
Sbjct: 243 AKRMPEFDKRRSIKSMFAAPPVKKTTSSQLK--RTPSGIDAAAQANVPSVDISPMEDKAA 300
Query: 285 NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 344
+ D + + A++ S +
Sbjct: 301 ASLSD---------------------EARPPTKRKASIPSKDALPNKKQKDT-------- 331
Query: 345 RKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 403
KA S+ GQ SLK FF K S V D + + ++ + + + + P +
Sbjct: 332 --KAAPSK-GQKSLKGFFSSKTSPVKPDLKSQESSQKSSITSPPAEVAFPPPQSPSTTFP 388
Query: 404 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 463
S + P S S V + + S ++ ++ W + +
Sbjct: 389 SQEPPSPTASAS-PTADQVATQIASAERSQR----------------SWGAL--FTKPPA 429
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
PLC+GH+EPC KK G GR F++CAR GP E CG F WA
Sbjct: 430 PLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPTGEKEKGTEWRCGTFIWA 482
>gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 132/543 (24%), Positives = 209/543 (38%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R YTCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMYTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V ++E P +++ S++ PV + S D E K
Sbjct: 478 APADRKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|336463554|gb|EGO51794.1| hypothetical protein NEUTE1DRAFT_149501 [Neurospora tetrasperma
FGSC 2508]
Length = 654
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 136/565 (24%), Positives = 211/565 (37%), Gaps = 117/565 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGRCVI + F+L VY P + D RI+F+ F + R L+ G+ +F+
Sbjct: 134 QLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVFL 191
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GS 112
GDLNI +D K + F + +V G
Sbjct: 192 CGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKPV 251
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ R HP+R YTCW + A N+G+RID++LC+ FV ++
Sbjct: 252 LWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KDWFVDANI 303
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 232
E L GSDH PVY + + + S +P
Sbjct: 304 QEG------------------------LLGSDHCPVYATISD--------SVSRDGVIIP 331
Query: 233 IIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTED------CSENVDRSLN 285
I + + +R+ K C S L E + +D N +S
Sbjct: 332 ITDIMNPEGMFKNGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSNTPKSAT 391
Query: 286 NYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 344
DS I SS + +T S S T+ + + SP RA
Sbjct: 392 PAADSQEIPDSPNTSSITVNATTVLQETASFASSPKQWLSQSAATEPALSQTSPVPKRRA 451
Query: 345 RKKA----------------KKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSL 381
+ A S+ G Q +L FF ++ V+ D+ + + +
Sbjct: 452 EQPAPYIRPPKKAKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPINGNN 511
Query: 382 NVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELH----GVNSSVCSHDQ 431
+ + +T+L E P+ + D H+ + G NS+V +
Sbjct: 512 HSPATTAETALRNEPFTAKGSQPKQSFEVDNFEERDEHAVEHKTNPTPYGENSTVM---E 568
Query: 432 DEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 491
DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++
Sbjct: 569 DEGKGKTIFDPIQNRES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYM 622
Query: 492 CARAEGPASNPEAN----CGYFKWA 512
CAR GP+ N E C F W+
Sbjct: 623 CARPLGPSGNKETGTEFRCKTFIWS 647
>gi|58271540|ref|XP_572926.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134115276|ref|XP_773936.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256564|gb|EAL19289.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229185|gb|AAW45619.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 654
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 42/224 (18%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
D +K ++ K+D EGR V+ D G F+LFN+Y P + ++ R +K+ + H LQ+R + L
Sbjct: 140 DGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNSARRPYKMNYLHALQERVQLLQ 197
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE---SGGSFFDVFRSK 120
GR + +VGD+NI +D + GP A+ + R +L + G DV R
Sbjct: 198 AAGREVMLVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCAPKGPMIDVVRES 256
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
P+R + +TCW A NYG+RID++LC
Sbjct: 257 WPQRDDMFTCWNQKLDARSANYGSRIDYVLCT---------------------------- 288
Query: 181 YKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHST 223
PG P KGG + ++ GSDH PVY+ L E P+ T
Sbjct: 289 -----PGLRPWIKGGDILPKVYGSDHCPVYVDLHESIVTPEGET 327
>gi|385145200|emb|CCD57787.1| putative DNA lyase apn2 protein [Neurospora africana]
Length = 627
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 130/566 (22%), Positives = 211/566 (37%), Gaps = 117/566 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+
Sbjct: 105 QLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFL 162
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESGGS------------ 112
GDLNI +D K + F + +V G
Sbjct: 163 CGDLNIIRNEMDTAGLPERLKKEAMTLDDFISIPSRRFLNQIVFGGXXXXRVIGEPDGGR 222
Query: 113 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP+R YTCW + A N+G+RID++LC+ FV
Sbjct: 223 EKPVLWDLCRELHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KDWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP---- 216
++ E L GSDH PVY +G+ +P
Sbjct: 275 DANIQEG------------------------LLGSDHCPVYATIGDSVSKDGVTIPITDI 310
Query: 217 --------------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
E Q +++ + G +Q++ + K+ K +
Sbjct: 311 VNPEGMFENGQRQREWSQKDCLPTSAKLIAEFDG-RQSIKDMFFKK---------KTPST 360
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
P + D++D + S LQG S+S + + T E +
Sbjct: 361 TPPSATPAADSQDTFYPPNTSSITVNAIAALQGAASSASLPKQLLSQSTTTEPALSQTSP 420
Query: 323 ASHSTITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNS 375
Q SS P A K S+ G Q +L FF ++ V+ D+ +
Sbjct: 421 VPKRRAEQPSSYIRPPKKAKAALAKQPSSKNGPGPSQSTLMGFFKPKTPTPTVNPDERLA 480
Query: 376 ITDTSLNVNNSVTDTSLSQEEVPESH----HHSNKIPVTDYSCSVHELHGVNSSVC-SHD 430
+ + + ++ +T+ E P + ++ I D H+ V +
Sbjct: 481 PVNGNNHSPATIAETTSRNEPSPANQPKRPFEADDIEEWDEDAVEHKTSPTTYRVTNTAM 540
Query: 431 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
+DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F+
Sbjct: 541 EDEGKGKTVFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFY 594
Query: 491 VCARAEGPASNPEAN----CGYFKWA 512
+CAR GP+ + E C F W+
Sbjct: 595 MCARPLGPSGDKETGTEFRCKTFIWS 620
>gi|387192399|gb|AFJ68655.1| AP endonuclease 2 [Nannochloropsis gaditana CCMP526]
Length = 523
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 139/556 (25%), Positives = 212/556 (38%), Gaps = 118/556 (21%)
Query: 9 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 68
+D L KID+EGR V+TDHGHF+L NVY P R +FK F L R G
Sbjct: 5 EDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPG--RARFKKAFNAALLARIIAFTVSG 62
Query: 69 RRIFVVGDLNIAPAAIDRCD--AGPDFAKNEFRIWFRSML---------VESGGS----- 112
R + + GDLN A D + + + A + W R++L + GG
Sbjct: 63 REVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSR 122
Query: 113 -------------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA- 152
D FR HP R +A++CW + T A NYG RID+IL +
Sbjct: 123 WEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASP 182
Query: 153 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY--M 210
G C + + + H+ E + + + GSDH PV
Sbjct: 183 GLCGYAEGP-----GIVAHLEEAAVRQEVR-------------------GSDHCPVTARF 218
Query: 211 CLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAK-QGKSCKFSGSLPAESNS 269
++ + S PS S RG + L+ L + + + L S
Sbjct: 219 SFSKLTDGSYLSLPSPFSE-----RGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLK 273
Query: 270 TGDTEDCSENVDRSLNN--------YCD--SGILQGVYCSSSNQESEGEFTKTIENCRDS 319
T S VD+S +N CD S ++ S + +G ++ C +
Sbjct: 274 VATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCART 333
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ + T ++ S+ + KSQ+ L+ R+ D++ T+
Sbjct: 334 STIGRKRTKSKSSAAQVP-----------TKSQM-TLTHYGIASTRAK-GGDESREATEE 380
Query: 380 SLNVNNS---VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
+ S V+ +L++E+ HS+ + T +SS+ S +
Sbjct: 381 KMTTGTSASFVSSKALAREQ------HSSTLYATK-----------SSSLSSSTMSAPQP 423
Query: 437 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARA 495
L+ R V L +R + + P C+GH EP V R VKK GR FF CAR
Sbjct: 424 GVMLEATRREVFLSAFRSQRD----NTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARP 479
Query: 496 EGPASNPEANCGYFKW 511
G + EA C F W
Sbjct: 480 VGTDGDKEARCRDFLW 495
>gi|225685280|gb|EEH23564.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb03]
Length = 510
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 140/561 (24%), Positives = 206/561 (36%), Gaps = 130/561 (23%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
S + +DSEGRCVI + F+L VY P + D +R F+ F + + R L+
Sbjct: 18 LSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAVDARVRNLVG 75
Query: 67 QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS---- 112
G+R+ + GDLNI+ + ID A +F R F ++ SGG
Sbjct: 76 MGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQLV--SGGKVIGD 133
Query: 113 ---------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
D+ R HP+RR YTCW A NYG+RID
Sbjct: 134 RDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRID---------------- 177
Query: 164 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 223
+V C + I+ D+ + L GSDH PVY + + + S
Sbjct: 178 ---YVLCSL----IMRDW---------FCASNIQEGLMGSDHCPVYADIKD-----KVSL 216
Query: 224 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 283
+ L I+ V+ KRE + SG L E C R
Sbjct: 217 DDMEVHILDILN-PDGMFVNGERKREYSS-ANVLPLSGRLIPEF--------CQRRSIRD 266
Query: 284 LNNYCDSGILQGVYCSSSNQESEGEFTKT-IENCR---------DSANVASHSTITQGSS 333
+ ++ SS S+G+ + N R + + AS ST T
Sbjct: 267 M-----------LFRQSSKGASQGDVNSAGVTNPRVPQKDTLGTNISGPASPSTSTTPKR 315
Query: 334 NHISPFHVDRARKKAKKSQ---------LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 384
+ K+ K+SQ GQ SLK FF + + S D+ + S V+
Sbjct: 316 SQQGDDGTTSRSKRLKRSQSSAIATARTKGQKSLKGFFGLKGSGSTADDQT---NSPKVS 372
Query: 385 NSVTDTSLSQEEVPESHHHSNKIPV-TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 443
+ V V + K P+ YSC + G Q E +
Sbjct: 373 DPVA--------VGNEQQEAAKSPLDITYSCPPGDGCGPEDDETQGQQQEAAEPLANGGD 424
Query: 444 RNNVALL--------EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
N+ ++ W RI + P C GH EPC++ V KK G GR F++CAR
Sbjct: 425 SNDDCIVHDPIANKESWSRI--FTKKPAPRCSGHHEPCISLVTKKAGINCGRSFWICARP 482
Query: 496 EGPA----SNPEANCGYFKWA 512
GP+ + + C F W+
Sbjct: 483 LGPSGVKKTGDQWRCDTFIWS 503
>gi|422292922|gb|EKU20223.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526]
gi|422294015|gb|EKU21315.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526]
Length = 617
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 204/551 (37%), Gaps = 108/551 (19%)
Query: 9 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 68
+D L KID+EGR V+TDHGHF+L NVY P R +FK F L R G
Sbjct: 99 EDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPG--RARFKKAFNAALLARIIAFTVSG 156
Query: 69 RRIFVVGDLNIAPAAIDRCD--AGPDFAKNEFRIWFRSML---------VESGGS----- 112
R + + GDLN A D + + + A + W R++L + GG
Sbjct: 157 REVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSR 216
Query: 113 -------------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA- 152
D FR HP R +A++CW + T A NYG RID+IL +
Sbjct: 217 WEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASP 276
Query: 153 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
G C + + + H+ E + + + GSDH PV
Sbjct: 277 GLCGYAEGP-----GIVAHLEEAAVRQEVR-------------------GSDHCPVTARF 312
Query: 213 GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAK-QGKSCKFSGSLPAESNSTG 271
++ S SL S + RG + L+ L + + + L S
Sbjct: 313 -SFSKLTDGSYLSLPSPFSE--RGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVA 369
Query: 272 DTEDCSENVDRSLNN--------YCD--SGILQGVYCSSSNQESEGEFTKTIENCRDSAN 321
T S VD+S +N CD S ++ S + +G ++ C ++
Sbjct: 370 TTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTST 429
Query: 322 VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 381
+ T ++ S+ + KSQ+ L+ R+ D++ T+ +
Sbjct: 430 IGRKRTKSKSSAAQVP-----------TKSQM-TLTHYGIASTRAK-GGDESREATEEKM 476
Query: 382 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 441
S + +S + + H S S S + V L+
Sbjct: 477 TTGTSA--SFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGV------------MLE 522
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPAS 500
R V L +R + + P C+GH EP V R VKK GR FF CAR G
Sbjct: 523 ATRREVFLSAFRSQRD----NTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDG 578
Query: 501 NPEANCGYFKW 511
+ EA C F W
Sbjct: 579 DKEARCRDFLW 589
>gi|385145211|emb|CCD57796.1| putative DNA lyase apn2 protein [Neurospora sublineolata]
Length = 616
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 134/555 (24%), Positives = 204/555 (36%), Gaps = 106/555 (19%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+
Sbjct: 105 QLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFL 162
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIW----------FRSMLVESG------------G 111
GDLNI +D P+ K E F + +V G
Sbjct: 163 CGDLNIIRNEMDTAGL-PERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKP 221
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+D+ R HP R YTCW + A N+G+RID++LC+ FV +
Sbjct: 222 VLWDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KGWFVDAN 273
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 231
+ E L GSDH PVY +G+ T S +
Sbjct: 274 IQEG------------------------LLGSDHCPVYATIGD--------TVSKDGTTI 301
Query: 232 PIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAE--------------SNSTGDTEDC 276
PI V + +R+ K C S L E D +D
Sbjct: 302 PITDIVNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKRKTPAADNQDT 361
Query: 277 SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI 336
S+ + S S LQ S+ + + + T E + Q +S+
Sbjct: 362 SDPPNTSSTTAHTSTALQEAASSAPSPKQSLSQSTTTEPALSQTSPGPKRRAEQPASSIR 421
Query: 337 SPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNVSHDDNNSITDTSLNVNN----SVT 388
V A K S+ G Q +L FF ++ N + +N NN ++
Sbjct: 422 PQKKVKAALSKQPSSKTGPGPSQSTLMGFFKPKTPTPT-LNPEERPSPINGNNHSLATIA 480
Query: 389 DTSLSQEEVPESHHHSNK-IPVTDYSCSVHELHGVNSSVCSHD------QDEKKGKRFLD 441
+T+ E P + D + +S H +DE KGK D
Sbjct: 481 ETATRNEPSPAKGSQPKRSFEADDIEERDEDAVEPKTSPAKHKATDTAMEDEGKGKTVFD 540
Query: 442 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 501
+N + W ++ L + +P C+ H + C + V KKPG GR F++CAR GP+ +
Sbjct: 541 SIQNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPGINCGRSFYMCARPLGPSGD 594
Query: 502 PEAN----CGYFKWA 512
E C F W+
Sbjct: 595 KETGTEFRCKTFIWS 609
>gi|336264660|ref|XP_003347106.1| hypothetical protein SMAC_05405 [Sordaria macrospora k-hell]
gi|380093801|emb|CCC08765.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 641
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 129/570 (22%), Positives = 214/570 (37%), Gaps = 130/570 (22%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+
Sbjct: 122 QLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLIAMGKEVFL 179
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GS 112
GDLNI +D K + F + +V G
Sbjct: 180 CGDLNIIRNEMDTAGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPV 239
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+D+ R HP R YTCW + A NYG+RID++LC+ FV ++
Sbjct: 240 LWDLCREFHPRRPGMYTCWETRKNARPGNYGSRIDYVLCSSGI--------KDWFVDANI 291
Query: 173 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP-------- 216
E L GSDH PVY + + +P
Sbjct: 292 QEG------------------------LLGSDHCPVYATISDTVTRDGITIPITDLMNPE 327
Query: 217 ----------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 266
E Q ++++ +P +Q++ + K+ K + P
Sbjct: 328 GMFKDGQRQREWSQKDCLPISAKLIPEF-DRRQSIKDMFFKK---------KTPSTTPKS 377
Query: 267 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 326
+ + D +D + + S + LQ S+ + ++ + T E ++ S
Sbjct: 378 ATAAADGQDTIDPTNTSSTTANATNALQEAASSAPSLKTSLSQSTTTEPA-----LSRTS 432
Query: 327 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS-----------FFHKR---SNVSHDD 372
I + + +P R KKAK + Q S KS FF + +V ++
Sbjct: 433 PIPKRRAEQPAP--AARPSKKAKATLSKQPSSKSVPGPSQSTLMGFFKPKIPTPSVKAEE 490
Query: 373 NNSITDTSLNVNNSVTDTSLSQEEVPE------SHHHSNKIPVTDYSCSVHELHGVNSSV 426
+ D + ++ DT+ PE S ++ I D +
Sbjct: 491 RPATADVNNYSPETIADTTTGDRLFPEKAGQPSSSFQTDDIEDWDEDAVASKTSPTTHKT 550
Query: 427 CSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 486
+ DE +GK F D +N + W ++ L + +P C+ H + C++ V KKPG G
Sbjct: 551 TTAAMDE-EGKVF-DPIQNKES---WSKL--LGKRVVPKCE-HGDDCMSLVTKKPGINCG 602
Query: 487 RRFFVCARAEGPASNPEAN----CGYFKWA 512
R F++CAR GP+ + E C F W+
Sbjct: 603 RSFYMCARPLGPSGDKETGTEFRCKMFIWS 632
>gi|342878043|gb|EGU79454.1| hypothetical protein FOXB_10039 [Fusarium oxysporum Fo5176]
Length = 593
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/543 (23%), Positives = 197/543 (36%), Gaps = 108/543 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+LF VY P + D R F+ FF L+ R L+ G+++ +
Sbjct: 108 LDSEGRCVILEFPGFVLFGVYSPA--TRDETRDDFRTGFFQALEVRIRNLVAAGKQVILT 165
Query: 75 GDLNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVESG-----------GSF 113
GDLN+ + +D + D+ R F ++ E
Sbjct: 166 GDLNVVRSELDSTNVSETLRKEGIDLSDWMNAPVRRIFNQLIFEGSVLGERDQGREKPVL 225
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HPER TCW + N G+RID++LC+ D F ++
Sbjct: 226 WDLCRCFHPERVGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNYSNIQ 277
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP- 232
E L GSDH PV+ L + + L P
Sbjct: 278 EG------------------------LMGSDHCPVFANLSDKVTVGDKECALLEMMNPPG 313
Query: 233 IIRGVQQ----------TLVSVLMKREVAKQGKSCKFS--GSLPAESNSTGDTEDCSENV 280
+ G ++ L S L+ +Q F+ + P E T +
Sbjct: 314 MFNGDERLRDWSPKDHLPLSSKLIPEFDRRQSIRDMFTKKAAPPREPTRT-------DTP 366
Query: 281 DRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH 340
LNN S G ++S+ GE T + + SA+ S + PF
Sbjct: 367 AEPLNNGNSSA--SGSPTNASSTPRLGE---TTNSTKLSASQPSSKRPGTAADTTSRPFK 421
Query: 341 VDR----ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 396
+ A K GQ +L+ FF ++ + D + + N S T +
Sbjct: 422 KTKSFTGANDTKSKVAQGQRTLQGFFKPKAPAAQDGKAEL--VAANSTPSTTKKPAGSGK 479
Query: 397 VPESHHHSNKIP---VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 453
P S + P T+ S L G +D R D A W
Sbjct: 480 APASAQRLSNTPQATPTEKSSPTVPLRG---------KDPDPSDRVFDPIE---AKESWS 527
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 509
++ L + P C+ H EPC++ KKPG GR F++C R GP+ E N C F
Sbjct: 528 KL--LGKRVAPRCE-HDEPCISFTTKKPGVNCGRMFYICPRPLGPSGEKERNSEWRCSTF 584
Query: 510 KWA 512
W+
Sbjct: 585 IWS 587
>gi|392578943|gb|EIW72070.1| hypothetical protein TREMEDRAFT_41480 [Tremella mesenterica DSM
1558]
Length = 668
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 104/234 (44%), Gaps = 40/234 (17%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++D EGR V+ D G F+LFN+Y P ++ R +K+ FFH LQ R L GR + +
Sbjct: 142 RLDMEGRAVVCDFGLFVLFNLYCPNETNDS--RRPYKMNFFHALQARVRALQAAGREVII 199
Query: 74 VGDLNIAPAAIDRCDAG-PDFAKNEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAYT 129
GD+NI A ID + G A+ ++ R +L + G DV R P+R + +T
Sbjct: 200 AGDINIMRAPIDSGEGGIRTSAEQHYQHPARVILNDWCAPKGPMIDVVRESWPDRDDMFT 259
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
CW A NYG+RID ILC PG
Sbjct: 260 CWNQKLDARPSNYGSRIDLILCT---------------------------------PGLR 286
Query: 190 PRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 242
P KGG + ++ GSDH PVY+ L E +P +L P+ R T +
Sbjct: 287 PWIKGGDIVPKVYGSDHCPVYIDLHESISLPSGQILTLHDALNPLDRPPTTTTI 340
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 511
PLC H++PC +VK PGP G+RF++C+ G N + C YF W
Sbjct: 595 PLCTVHQQPCKDFIVKIPGPNKGKRFWLCSLPVGAGYDTGRSKRPREDVNRDFRCDYFLW 654
Query: 512 AFSKSKQK 519
S ++QK
Sbjct: 655 D-SANRQK 661
>gi|340519815|gb|EGR50053.1| DNA lyase [Trichoderma reesei QM6a]
Length = 567
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 129/531 (24%), Positives = 199/531 (37%), Gaps = 118/531 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DELL +DSEGRCVI + F+L VY P + D R++F+++F L R L+ +G+
Sbjct: 119 DELL-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVEFRMEFLQALDARVRNLVAEGK 175
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS--------- 112
+ + GDLN++ A D + + K + W R + + GG+
Sbjct: 176 EVILAGDLNVSRAEADSTNIVENLRKEGLSMEEWMNLPSRRLFNHLVFGGTVQGERDVGR 235
Query: 113 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R TCW + N G+RID++LC+ H L+ F
Sbjct: 236 EQPVLWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLRDW-FT 287
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
++ E L GSDH PV+ L +V +T +
Sbjct: 288 EANIQEG------------------------LMGSDHCPVFATLADV-----VTTGNEKV 318
Query: 229 RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 288
L ++ V RE + S L E + D
Sbjct: 319 SLLHLVNPVGMFDRDGRRLREWHPK-DVLPLSAKLIPEFDRRQSIRDMFTK--------- 368
Query: 289 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 348
+G+ Y SS GE T E DSA + T+ S + AR A
Sbjct: 369 KAGVRPSSYSSSLGA---GEPTPEGEPAGDSARSEQLESKTKTSHAADHGLGLSDARHSA 425
Query: 349 KKSQL---GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 405
+ + L GQ +L+ FF +S + + T T+ + P
Sbjct: 426 RSNPLLAQGQTTLQGFFQP---------SSAKRVTKGRDGDATTTASANTSAP------- 469
Query: 406 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 465
+SC ++ + D L KE W ++ L + +P
Sbjct: 470 ------FSC-----EQTTAAAAALPSDRLVFDPILAKE-------SWSKL--LGKRKLPR 509
Query: 466 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
C+ H EPC++ V K+PG G F++CAR GP+ E CG F W+
Sbjct: 510 CE-HNEPCISLVTKRPGVNCGMSFYICARPLGPSGEKERGSEWRCGTFIWS 559
>gi|401883940|gb|EJT48120.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 2479]
gi|406696085|gb|EKC99381.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 8904]
Length = 635
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++D EGR V+ D G F+LFN+Y P SE R +KL F VL+ R E L+ GR + +
Sbjct: 150 RLDVEGRAVVCDFGLFVLFNLYVPNRGSE--ARGPYKLNFLTVLRARVEALMAAGREVIL 207
Query: 74 VGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N+ ID + G + + R+ F S G DV R P+R YT
Sbjct: 208 AGDMNVIRQPIDFGEGTIVPGTHYLDHPDRLLFESW-CHPKGPLIDVVRESFPDREGMYT 266
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLH---QKHDLQSHNFVTCHVNECDILIDY--KRW 184
CW + A NYG+RID+ILC P L + D+QS F + H C + ID +
Sbjct: 267 CWNTKIDARPANYGSRIDYILCT-PGLRKWIKGGDIQSKVFGSDH---CPVYIDLHDEIE 322
Query: 185 KPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV 244
+ G R K ++ AP + +VP P A+++ G Q+TL S+
Sbjct: 323 ENGRTIRLKDVLNPANRPQSTAPKFP--SDVPRT-APEPPRFATKFFDEFSGKQRTLKSL 379
>gi|302686738|ref|XP_003033049.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
gi|300106743|gb|EFI98146.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
Length = 697
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 105/256 (41%), Gaps = 58/256 (22%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGR ++ D G F+L NVY P SE R+++K+ F +L R L+ +GR + VV
Sbjct: 135 LDAEGRTLVADFGLFVLINVYCPNDGSEAQERMKYKMDFHRMLSVRVRGLIDEGREVIVV 194
Query: 75 GDLNIAPAAIDRCDA------------------GPDFAKNEF------RIWFRSMLVESG 110
GDLN D C+ G A+ F R W R LVE G
Sbjct: 195 GDLNAVSDVGDHCEGALTVRKIIDEARKEGQEVGEKEAEEMFYDTMPARRWLRDSLVEHG 254
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 170
G DV + PER+ YTCW + A NYG RID IL ++
Sbjct: 255 GPLVDVCKRFWPERKGMYTCWNTKISARASNYGARIDFILVT-------------PYLLP 301
Query: 171 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 230
+ DI D K GSDH PV + + E+ ++ PS
Sbjct: 302 LIKHADIQPDVK-------------------GSDHCPVIVEFHD--EVDVNAIPSSVKAN 340
Query: 231 LPIIRGVQQTLVSVLM 246
L + G + + LM
Sbjct: 341 LSLPTGATRVSLQALM 356
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 505
L P C H EP V K G GR F+VC+R GP +P+
Sbjct: 617 LAAPPPPRCYVHDEPAREFTVNKKGENKGRAFYVCSRPVGPGYDKGRAERRREDVDPQYK 676
Query: 506 CGYFKW 511
C +F+W
Sbjct: 677 CDFFRW 682
>gi|170102771|ref|XP_001882601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642498|gb|EDR06754.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 650
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGR VI D G F+L NVY P + R ++K+ F +L+ R L+ +GR + VV
Sbjct: 134 LDSEGRTVILDLGLFVLINVYCPNDGNGTEERDKYKMDFHRLLEMRVVGLIKEGREVMVV 193
Query: 75 GDLNIAPAAIDRCDAGPDFAKN--------------EFRIWFRSMLVES-----GGSFFD 115
GDLN A ID C+ AK + R W R LV GG D
Sbjct: 194 GDLNACAAIIDHCEGHLMVAKGLAEGLQGEEGFWGKDSRRWMRGFLVPEDEGMPGGFMID 253
Query: 116 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ R PER+ YTCW + A NYGTRID+IL
Sbjct: 254 IVRKLWPERKGMYTCWNTKISARDSNYGTRIDYILI 289
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------- 499
EW + L P C H E V K G G+RFF+CAR GP
Sbjct: 559 EWTNL--LAPIQPPKCIVHGELAKELTVTKQGANKGKRFFICARPVGPGYDKGRGERLRE 616
Query: 500 -SNPEANCGYFKWA 512
+P C +FKW+
Sbjct: 617 HVDPHWKCDFFKWS 630
>gi|62085788|gb|AAX63285.1| DNA lyase [Beauveria bassiana]
gi|62085830|gb|AAX63306.1| DNA lyase [Beauveria bassiana]
gi|62085840|gb|AAX63311.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 131/543 (24%), Positives = 209/543 (38%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V ++E P +++ S++ PV + S D E K
Sbjct: 478 APADRKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|449302156|gb|EMC98165.1| hypothetical protein BAUCODRAFT_32166 [Baudoinia compniacensis UAMH
10762]
Length = 642
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 136/555 (24%), Positives = 206/555 (37%), Gaps = 117/555 (21%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ +D+EGRCV+ + F+L VY P + + +R F+ F L R L G+R+
Sbjct: 132 MVLDAEGRCVMVEFPAFVLLGVYSPA--NSNGLRDDFRYGFICALDCRIRNLSKAGKRVV 189
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVES-----------GG 111
+VGDLN++ D A D K R F +LV+ G
Sbjct: 190 LVGDLNVSRDERDTASALEDMRKAGITHEEYISTPNRRIFNQLLVDGEVVGERDDGRESG 249
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+D R+ HP+R YT W A N+G+RID +L C + ++ N
Sbjct: 250 LLWDTCRAFHPQRERMYTHWEQKINARPGNFGSRIDFVLV---CEEMQTWVKDAN----- 301
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------MCLGEVPEIPQHSTP 224
+ L GSDH PVY MC GE ++ P
Sbjct: 302 ------------------------IQEGLVGSDHCPVYADFHDDVMCAGETVKLADAMNP 337
Query: 225 SLASRYLPIIRGVQQTLVSVLMKREVA--KQGKSCKFSGSLPAESNSTGDTEDCSENVDR 282
+ R + + V V + + ++ +S K S P
Sbjct: 338 AGVFSRGFRAREWRLSDVPVFSAKRLPEFERRRSIKSMFSTP------------------ 379
Query: 283 SLNNYCDSGILQGVY-------CSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 335
SL + + QGV+ S +ESE T T+ ++ A+ A + Q SS
Sbjct: 380 SLIKQSSTQVAQGVFDAERSFIPSPPQRESEEPHT-TVPLSQEIASTAPTAHDNQSSSGV 438
Query: 336 ISPFHVDRARKKAKKSQL--------GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSV 387
+ K +K+ +L GQ SLK FF S + D + T +S +
Sbjct: 439 KRKASMATKLKSSKRQKLDGAAPSLKGQQSLKGFFQ--SGRAEVDTTASTQSSTAIEPDA 496
Query: 388 TDTSLSQEEVP--ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 445
+ E P + N Y + H L ++S++ Q R
Sbjct: 497 AGVLTTPETSPIKSTDGGINASATPAYDPTTH-LPDLDSNLPPSSQSSTT-----SPSRV 550
Query: 446 NVALLEWRRIQQLMETSI-----PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS 500
+ L R Q+ T P+C+GH EPC + + KK G GR F++CAR GP+
Sbjct: 551 SAKLAAVERTQRSWSTLFSRPVAPMCEGHDEPCKSMLTKKKGSNQGRSFWMCARPLGPSG 610
Query: 501 NPEAN----CGYFKW 511
N E C F W
Sbjct: 611 NKEKGTQWRCPTFIW 625
>gi|395331650|gb|EJF64030.1| DNase I-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 686
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 114/271 (42%), Gaps = 61/271 (22%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFV 73
+DSEGR ++ D G F+L NVY P S++ R+ FK+ F +LQ+R L+ RR + V
Sbjct: 137 LDSEGRALVLDFGLFVLVNVYCPAETSDE--RLPFKMNFHLLLQERVRRLVEDERREVVV 194
Query: 74 VGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+GD+N+ A ID CD F + R WFR + G DV R HP+R+ +
Sbjct: 195 LGDINVCAAPIDHCDGHLPSTVAAFYDHPARAWFRRW-IGPDGPLTDVIRQCHPDRKGLF 253
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
TCW + T A + NYG RID++L L
Sbjct: 254 TCWDTRTQARETNYGARIDYVLVTRGLLP------------------------------- 282
Query: 189 APRW--KGGMSTRLEGSDHAPVYMCL--------GEVPEI--PQHSTPSL------ASRY 230
W G + L GSDH PVY+ L GE + TP L A+RY
Sbjct: 283 ---WIAAGDIQPALRGSDHCPVYVDLRDEITLASGETIALRDAMKQTPGLRDPPRTAARY 339
Query: 231 LPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 261
G Q L + K AK + G
Sbjct: 340 WDEFAGRQMVLSAFFGKGAAAKTKTKTETDG 370
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 511
P C H EP V KPGP G+ F++CAR GP + C YFKW
Sbjct: 606 PRCTVHDEPARLYTVNKPGPNRGKTFYLCARPVGPGYDKGRGERLREEVDHRYRCNYFKW 665
Query: 512 A 512
A
Sbjct: 666 A 666
>gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
Length = 580
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 122/539 (22%), Positives = 198/539 (36%), Gaps = 114/539 (21%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K R +L E
Sbjct: 163 QVILAGDLNIIRSEMDSSNIAESLRKEGILMDEWQSMPTRRILNQLLFEGSVIGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRSWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGG 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 322
+ + G T D + ++ R ++ + V + + G +E R +
Sbjct: 369 DVLQIENRGTTSDTAASLSRKMSGAGGTACANNVGAAVALAPPRG--NTGLERGRQTKRD 426
Query: 323 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 382
T G +N S D A+ KA GQ +L+ FF + V+ D S +
Sbjct: 427 GEQPTELGGPANKKSKSSSD-AKVKASN---GQRTLQGFFKPKV-VASDTATSAGGLAPA 481
Query: 383 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 439
V + + P+++ S++ P+ + S V D E K
Sbjct: 482 DRKQV---PVRERTPPQANGGSSQAPIPSPKTPTEPIVAATKLFSPVKVFDPIEAKE--- 535
Query: 440 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H E C++ V KKPG GR F++C R GP
Sbjct: 536 -----------SWSKL--LGKRVVPRCE-HDESCISLVTKKPGVNCGRSFYICPRPLGP 580
>gi|62085874|gb|AAX63328.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 131/543 (24%), Positives = 209/543 (38%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V ++E P +++ S++ PV + S D E K
Sbjct: 478 APADRKQVP----ARERTPLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|378734461|gb|EHY60920.1| AP endonuclease 2 [Exophiala dermatitidis NIH/UT8656]
Length = 635
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 214/552 (38%), Gaps = 118/552 (21%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L Y P D R F+ F +VL R L+ G+R+ V
Sbjct: 137 LDSEGRCVILEFPAFVLIGTYCPA--ERDETRTHFRTSFLNVLDARIRNLVKMGKRVVWV 194
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS-------------F 113
GD+NI+ ID A K+ W R ML + GG
Sbjct: 195 GDMNISREEIDTAAAEESMRKHGIDAAEWISTPARRMLNQLLVGGKVRGERDEGRETAIM 254
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+DV R+ H RR YTCW + A NYG+RID+I+C+ HD++
Sbjct: 255 WDVCRAFHEGRRGMYTCWETKVNARPGNYGSRIDYIICS-------HDMR---------- 297
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP- 232
D+ W N + L GSDH PVY L + I T L P
Sbjct: 298 ------DW--WSDAN-------IQEGLLGSDHCPVYAVLKDKVLINGKETHVLDLMNPPG 342
Query: 233 -IIRGVQQTLVSVLMKREVAKQGKSC--KFSGSLPAE---SNSTGDTEDCSENVDRSLNN 286
+ GV+Q RE + C SG L E S D + +S +
Sbjct: 343 MFVEGVRQ--------REWTTK---CLLPLSGKLIQEFYKRQSIKDMLTRQPTLQKSKST 391
Query: 287 YCDSGILQGVYCSS-----SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 341
++ QGV + S +E T + + R++ + ST ++++
Sbjct: 392 IDEA---QGVSTTPPSVQVSATGTEPTTTPSQSDEREAVSKTDFSTCPSSTTSY------ 442
Query: 342 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN----VNNSVTDTSLSQEEV 397
A++KAK ++ +S K +++S + + SL S TD+ ++Q
Sbjct: 443 --AKRKAKTNETLSSVKRS---KSASISTPNGSGKGQQSLKGFFAAKPSTTDSKMTQP-- 495
Query: 398 PESHHHSNKI-PVTDYSCSVHELHGVNSS-----------VCSHD-QDEKKGKRFLDKER 444
PE S + P + S E V +S + S D E G F+
Sbjct: 496 PEHSPQSGVLRPASIISNGGAEATNVLTSMATAADATTEALSSKDGMTEGSGPEFISTPA 555
Query: 445 NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEA 504
+ W ++ P C+ H EPC V KKPG GR F++C R GP+ E
Sbjct: 556 PSKTKHTWGKL--FSRPVAPKCE-HDEPCKIMVTKKPGVNCGRSFWMCNRPLGPSGKQEK 612
Query: 505 N----CGYFKWA 512
C F WA
Sbjct: 613 GTQWRCNTFIWA 624
>gi|405122231|gb|AFR96998.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. grubii H99]
Length = 671
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 42/215 (19%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
D +K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ+R L
Sbjct: 112 DGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNGARRPYKMNYLHALQERVHLLQ 169
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE---SGGSFFDVFRSK 120
GR + +VGD+NI +D + GP A+ + R +L + G DV R
Sbjct: 170 AAGREVILVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCAPKGPMIDVVRES 228
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
P+R + +TCW A NYG+RID++LC
Sbjct: 229 WPQRDDMFTCWNQKLDARSANYGSRIDYVLCT---------------------------- 260
Query: 181 YKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGE 214
PG P KGG + ++ GSDH PVY+ L E
Sbjct: 261 -----PGLRPWIKGGDILPKVYGSDHCPVYVDLHE 290
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 493
E+N A +W + + PLC H +PC +V KPGP G+RF++C+
Sbjct: 593 EKNAKAAPQWSSL--FAKKLPPLCTVHHKPCKDFIVMKPGPNKGKRFWLCS 641
>gi|169595280|ref|XP_001791064.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
gi|111070752|gb|EAT91872.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
Length = 635
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 128/569 (22%), Positives = 202/569 (35%), Gaps = 145/569 (25%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRC++ + F+LF VY P + + +R F+ F L R L G+ + +
Sbjct: 136 LDAEGRCLVIEFPAFVLFGVYSPA--NSNGLRDDFRYGFLTALDTRIRNLNNMGKNVILT 193
Query: 75 GDLNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVES-----------GGSF 113
GDLN++ ID A ++ R F +L+
Sbjct: 194 GDLNVSRDLIDTARAEDSMRSEGMTHTEYLSTPNRRVFNQLLMNGQVPGERDEGREAPVL 253
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R YT W A N+G+RID +LC+
Sbjct: 254 YDLCREFHPDREGMYTHWEQKINARPGNFGSRIDFVLCS--------------------- 292
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 233
I K W + + L GSDH PVY + E + S + +
Sbjct: 293 -----IAIKDWFKDS------DIQEGLMGSDHCPVYALMKE-----KVSRGKMLHAGVAD 336
Query: 234 IRGVQQT--LVSVLMKREVAKQGKSCK----------FSGSLPAE----------SNSTG 271
+ Q+ L+ ++ + K G+ + SG L E N
Sbjct: 337 MEDTQEEFHLLDLMNPPGMYKNGRRQRDYNPAKDMPSLSGKLLPEFTKRQNIRDMFNKKP 396
Query: 272 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 331
E+ S + ++ + + + S++ Q + T ++E R ++
Sbjct: 397 SLENSSVSHSSNMGAHVVTAEAPAIPLSAAIQSPDKVSTPSLETFRSNSTSNKSGLSIPL 456
Query: 332 SSNHISPFHVDRARKKAKKSQLG--------------QLSLKSFFHKRSNVSHDDNNSIT 377
S K K+S+LG Q SLK FF R+N S
Sbjct: 457 KSPEKRRASSTTPMKSGKRSRLGLPNTLNGTHPMAKGQQSLKGFFQSRTNAS-------- 508
Query: 378 DTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE----------LHGVNSSVC 427
D+ QEE P +P TD + E G +SS
Sbjct: 509 -----------DSKPGQEETP-------LVPFTDAAVETAENRTSLSQTSNTKGPSSSPP 550
Query: 428 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 487
+H Q + + KE W ++ + P C+GH EPC+ KKPG GR
Sbjct: 551 AHVQTDPLASQEASKE-------GWTKL--FSKKPSPRCEGHAEPCIMLTTKKPGVNCGR 601
Query: 488 RFFVCARAEGPASNPEAN----CGYFKWA 512
+F++C+R GP+ E C F WA
Sbjct: 602 QFWMCSRPIGPSGQKETGTQWRCATFIWA 630
>gi|62085798|gb|AAX63290.1| DNA lyase [Beauveria bassiana]
gi|62085850|gb|AAX63316.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 130/543 (23%), Positives = 208/543 (38%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D R +F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRFEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V ++E P +++ S++ PV + S D E K
Sbjct: 478 APADRKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085786|gb|AAX63284.1| DNA lyase [Beauveria bassiana]
gi|62085844|gb|AAX63313.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S + D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPIKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|389745395|gb|EIM86576.1| DNase I-like protein [Stereum hirsutum FP-91666 SS1]
Length = 677
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQGR 69
+LL +DSEGR ++ D G F+L N+Y P S+ R+ FKL + +L++R L+ + R
Sbjct: 147 DLLSLDSEGRALVLDFGLFVLINLYCPNETSD--ARLPFKLNYHRMLEERVRILVEREER 204
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPER 124
+ VVGD+N+ ID D K F R WF L + G DV R P+R
Sbjct: 205 EVIVVGDINVCAEPIDHGDGHLPSCKEGFWEPPCRAWFYEWL-DPKGKMIDVVRRFWPDR 263
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 184
+ YTCW G + NYG+RID+IL
Sbjct: 264 KGMYTCWNQKIGGRESNYGSRIDYILVT-------------------------------- 291
Query: 185 KPGNAPRWK-GGMSTRLEGSDHAPVYMCL 212
PG P K G + ++GSDH PVY+ L
Sbjct: 292 -PGLMPWIKHGDIEPTIKGSDHCPVYVDL 319
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 511
P C H EP V KPGP G+ FF+C+R GP + + C +FKW
Sbjct: 598 PKCIVHGEPTKELRVNKPGPNKGKTFFICSRPVGPGYDKGRMERLRDEVDHQWRCNFFKW 657
Query: 512 A 512
+
Sbjct: 658 S 658
>gi|62085822|gb|AAX63302.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 207/542 (38%), Gaps = 121/542 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKG 436
+ V + + +++ S++ PV + S D E K
Sbjct: 478 APADRKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE 534
Query: 437 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 535 --------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPL 577
Query: 497 GP 498
GP
Sbjct: 578 GP 579
>gi|321262100|ref|XP_003195769.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317462243|gb|ADV23982.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 651
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 40/214 (18%)
Query: 6 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
D +K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ+R L
Sbjct: 112 DGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNDARRPYKMNYLHALQERVHLLQ 169
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML---VESGGSFFDVFRSK 120
GR + +VGD+NI +D + GP A+ + R +L G DV R
Sbjct: 170 AAGREVIIVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDNWCAPKGPMVDVIRES 228
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
P+R + +TCW A NYG+RID++LC H L
Sbjct: 229 WPQRDDMFTCWNQKLDARSANYGSRIDYVLCT-------HGL------------------ 263
Query: 181 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ W G G + +++ GSDH PVY+ L E
Sbjct: 264 -RPWIKG------GDILSKVYGSDHCPVYVDLHE 290
>gi|62085852|gb|AAX63317.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085854|gb|AAX63318.1| DNA lyase [Beauveria bassiana]
gi|62085856|gb|AAX63319.1| DNA lyase [Beauveria bassiana]
gi|62085858|gb|AAX63320.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085860|gb|AAX63321.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085862|gb|AAX63322.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085864|gb|AAX63323.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085866|gb|AAX63324.1| DNA lyase [Beauveria bassiana]
gi|62085868|gb|AAX63325.1| DNA lyase [Beauveria bassiana]
gi|62085870|gb|AAX63326.1| DNA lyase [Beauveria bassiana]
gi|62085872|gb|AAX63327.1| DNA lyase [Beauveria bassiana]
gi|62085876|gb|AAX63329.1| DNA lyase [Beauveria bassiana]
gi|62085878|gb|AAX63330.1| DNA lyase [Beauveria bassiana]
gi|62085880|gb|AAX63331.1| DNA lyase [Beauveria bassiana]
gi|62085882|gb|AAX63332.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q SL+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QVESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085790|gb|AAX63286.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 204/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ECAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI 218
++ E L GSDH PVY + ++ E+
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 219 ----------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + +P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085808|gb|AAX63295.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 207/542 (38%), Gaps = 121/542 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF------- 114
++ + GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDR 222
Query: 115 ------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 319
P N T DT S + R+ C + + V + + +E R +
Sbjct: 369 SPQIENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQT 422
Query: 320 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 379
+ T + +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 423 KRDSEQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGEL 477
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKG 436
+ V + + +++ S++ PV + S D E K
Sbjct: 478 APADRKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE 534
Query: 437 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 535 --------------SWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPL 577
Query: 497 GP 498
GP
Sbjct: 578 GP 579
>gi|62085890|gb|AAX63336.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDLRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q SL+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QVESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085794|gb|AAX63288.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 201/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|452987163|gb|EME86919.1| hypothetical protein MYCFIDRAFT_194837 [Pseudocercospora fijiensis
CIRAD86]
Length = 622
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 119/542 (21%), Positives = 203/542 (37%), Gaps = 100/542 (18%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
M + + ++ +D+EGRCV+ + F+LF VY P + + +R F+ F L R
Sbjct: 121 MADIAEIGGEDPAGLDAEGRCVVVEFPAFVLFGVYSPA--NSNGLRDGFRHGFVCALDHR 178
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFRIWFRSMLV 107
L+ G+ + +VGDLN+ ID +GP DF R F L+
Sbjct: 179 IRNLIKAGKNVILVGDLNVTRHEID---SGPTLEEMRKGLITHEDFISGPNRRIFNQQLI 235
Query: 108 ES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ G F+D R HP+R+ YT W + A N+G+RID +L +
Sbjct: 236 DGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDFVLVSEALR 295
Query: 157 H--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ ++Q + H C + ID++ N G L+ + V++
Sbjct: 296 SWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPPAVFVGGER 347
Query: 215 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 274
E STP +++ +P ++T+ S+ + K + P S +
Sbjct: 348 KQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ--------PTPPGSVAQAD 398
Query: 275 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 334
D V E+EG + + I+ ++
Sbjct: 399 DSQPAV-----------------------ETEG------------STAPAKRKISVSTTP 423
Query: 335 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 394
PF ++ K ++ GQ SLK FF +S + ++ D
Sbjct: 424 KEYPFKKQKSDIKTAPTK-GQQSLKGFFQAKS----------VPITAAAQSAEKDLKNET 472
Query: 395 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 454
E+ + ++ + + S + ++S + D D K + +W
Sbjct: 473 EDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSPRKFASKLASAEKSQHQWGA 532
Query: 455 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFK 510
+ PLC+GH EPC + KK G GR F++CAR GP+ E CG F
Sbjct: 533 L--FSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQWRCGTFI 590
Query: 511 WA 512
W+
Sbjct: 591 WS 592
>gi|242215539|ref|XP_002473584.1| predicted protein [Postia placenta Mad-698-R]
gi|220727304|gb|EED81227.1| predicted protein [Postia placenta Mad-698-R]
Length = 475
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 140/362 (38%), Gaps = 79/362 (21%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQGRRIFV 73
+DSEGR ++ D G F+L NVY P S+ R+ FK+ F +LQ+R L+ + R + V
Sbjct: 118 LDSEGRTLVVDFGLFVLINVYCPAETSD--ARLPFKMNFHLLLQERIRKLIEKEHREVIV 175
Query: 74 VGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
VGD+NIA +D + F + R WFR+ L + G DV R PER+ Y
Sbjct: 176 VGDINIAATPLDHAEGNLPSSIATFWDHPAREWFRNWL-DPNGPMVDVIRMFWPERKGLY 234
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYKRWKPG 187
TCW A + NYG RID++L L KH
Sbjct: 235 TCWNMKLQARETNYGARIDYVLVTKGLLPWIKH--------------------------- 267
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK 247
G + L+GSDH P+Y+ L + L + G L + +
Sbjct: 268 ------GDIQASLKGSDHCPIYIDLHD---------------ELLLENGETIKLRDAMKQ 306
Query: 248 REVAKQGKSC-----KFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSN 302
EV + + C +FSG S G E+ + S +L SS
Sbjct: 307 NEVTQPPRLCAKFWDEFSGKQTVLSTFFGKREEMPSQTPSA------SPVLVTTIPSS-- 358
Query: 303 QESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF 362
K+I S+ + T Q + S + K K GQ L SFF
Sbjct: 359 --------KSITRSFSSSRINDQRTSGQSAKRKPSDKGLSSGSNKKNKVDPGQAKLASFF 410
Query: 363 HK 364
K
Sbjct: 411 SK 412
>gi|62085836|gb|AAX63309.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 205/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V + Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRD 318
P N G T D + + ++ +G G+ C+++ + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVLSRKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085834|gb|AAX63308.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 201/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085800|gb|AAX63291.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QIESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085838|gb|AAX63310.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 199/543 (36%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V + Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ S +S T
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKAVAS----DSATS 473
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ P+++ S++ PV + S D E K
Sbjct: 474 AGELAPADRKQLPTRERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|169850286|ref|XP_001831840.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
gi|116507128|gb|EAU90023.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
Length = 609
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFV 73
+DSEGR ++ D G F+L N Y P + R FK+ + +L+ R L+ + +R + V
Sbjct: 138 LDSEGRAIVVDMGLFVLINTYCPNDGTGTEEREAFKMDYHRLLETRVRGLIEKEKREVIV 197
Query: 74 VGDLNIAPAAIDRCDA-------------GPD-FAKNEFRIWFRSMLVE---SGGSFFDV 116
VGDLN A ID C+ G + F E+R W R LV+ +GG+ D+
Sbjct: 198 VGDLNACAAVIDHCEGELMIKKGQAMGLEGEEGFWGKEYRRWIRDWLVKEDGTGGTLVDI 257
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
R P+R YTCW + A + NYGTRID IL
Sbjct: 258 TRKLWPDREGMYTCWNTKISARETNYGTRIDFILVT 293
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
P CK H EP V KPGP G+RFF+C+R
Sbjct: 572 PKCKAHGEPAKEYTVNKPGPNKGKRFFICSR 602
>gi|62085820|gb|AAX63301.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 205/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V + Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRD 318
P N G T D + + ++ +G G+ C+++ + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSRKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085886|gb|AAX63334.1| DNA lyase [Beauveria bassiana]
gi|62085888|gb|AAX63335.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QIESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|388579621|gb|EIM19943.1| DNase I-like protein [Wallemia sebi CBS 633.66]
Length = 510
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++D+EGR + D+G F+L NVY P E R++FK F +L +R L GR+I +
Sbjct: 134 QLDTEGRALCLDYGMFVLINVYCPAEGDES--RVKFKKSFHELLFERIRILKEGGRQIIL 191
Query: 74 VGDLNIAPAAIDRCDA----GPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPER 124
+GD+NIA AID CD D K EF R W ++ + D+ R HP R
Sbjct: 192 LGDINIAHRAIDHCDGLELTRTDIGKMEFETKYTRQWMDKLVSDDNSPLVDIMRLFHPTR 251
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHIL 150
+TCW A NYGTRID++L
Sbjct: 252 EGMFTCWNQLINARPSNYGTRIDYVL 277
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN------------CGYFK 510
+P CK H E C V KPGP G++F++C+R GP + + C +F
Sbjct: 431 VPKCKVHNEDCREYTVNKPGPNKGKKFWLCSRNVGPGYDAGGSKRNRADVDSRYRCNFFV 490
Query: 511 WA 512
W+
Sbjct: 491 WS 492
>gi|62085812|gb|AAX63297.1| DNA lyase [Beauveria bassiana]
gi|62085814|gb|AAX63298.1| DNA lyase [Beauveria bassiana]
gi|62085824|gb|AAX63303.1| DNA lyase [Beauveria bassiana]
gi|62085826|gb|AAX63304.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGQRVRNWDQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QVESRGVTPDTAASSGTTMSGAGGMACTNKVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|62085806|gb|AAX63294.1| DNA lyase [Beauveria bassiana]
gi|62085816|gb|AAX63299.1| DNA lyase [Beauveria bassiana]
gi|62085818|gb|AAX63300.1| DNA lyase [Beauveria bassiana]
gi|62085828|gb|AAX63305.1| DNA lyase [Beauveria bassiana]
gi|62085832|gb|AAX63307.1| DNA lyase [Beauveria bassiana]
gi|62085842|gb|AAX63312.1| DNA lyase [Beauveria bassiana]
gi|62085848|gb|AAX63315.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q SL+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QVESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D A+ KA GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD-AKVKASN---GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADREQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|346320505|gb|EGX90105.1| DNA lyase [Cordyceps militaris CM01]
Length = 613
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 129/556 (23%), Positives = 208/556 (37%), Gaps = 127/556 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 124 DEAL-LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALDARIRNLITAGK 180
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
++ + GDLNI + +D + K + W F ++ E
Sbjct: 181 QVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQLVFEGTVIGDRDTGR 240
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D V
Sbjct: 241 EHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS--------DGIKDWIV 292
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-------GEVPEIPQH 221
++ E L GSDH PVY + G + +
Sbjct: 293 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKNGTEMTLAEA 328
Query: 222 STPSLASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDT 273
PS +R +Q L+ +R ++ + K S +L G +
Sbjct: 329 MNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKASQTLLHPEKIGGQS 388
Query: 274 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQ--- 330
N D + +SG S+N ++ ++ N+ S +
Sbjct: 389 LQI-RNADMAAYTARNSGTTASSGAESTNCFEAAAPLVSVGGT-NNVNLQRGSQTKKRRP 446
Query: 331 -GSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTD 389
G + P + + K++ GQ +L+ FF ++ V+ +NNS+T +
Sbjct: 447 DGPAQAALPTNKRGKNSRDTKTKTGQTTLQGFFKPKT-VASLENNSVTSVA--------- 496
Query: 390 TSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVAL 449
E+VP S ++PV + +G S D E K
Sbjct: 497 -----EQVPAG---SGRVPVRAQEAPLA--NGGLSPAKVFDPIEAKDS------------ 534
Query: 450 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF---------GRRFFVCARAEGPAS 500
W ++ L + +P C+ H EPC++ V KKPG R F++C R GP+
Sbjct: 535 --WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCVLAGEAVDQRRSFYICPRPLGPSG 589
Query: 501 NPEAN----CGYFKWA 512
+ E + CG F W+
Sbjct: 590 DKERDTEWRCGTFIWS 605
>gi|62085792|gb|AAX63287.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 204/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E+
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEATVIGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+ ID+ILC+ D FV
Sbjct: 223 ECAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSPIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI 218
++ E L GSDH PVY + ++ E+
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 219 ----------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + +P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|308803490|ref|XP_003079058.1| APEX nuclease (ISS) [Ostreococcus tauri]
gi|116057512|emb|CAL51939.1| APEX nuclease (ISS) [Ostreococcus tauri]
Length = 524
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 84/154 (54%), Gaps = 12/154 (7%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPR----ADSEDTVRIQFKLQFFHVLQKR 60
ED+++ + L D EGR + D G F+L N+Y P D + RI FK F L++R
Sbjct: 173 EDYARAKAL--DDEGRAIWADFGEFVLCNLYAPTTYGAVDEKVAERIDFKRDFLRALEER 230
Query: 61 WEFLLCQGRRIFVVGDLNIAPA-AIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVF 117
L +GRR+ + GD NIAP +DR P KNE R W +L + G DVF
Sbjct: 231 LTSLRSRGRRVIMCGDWNIAPNWKLDRAHDDPRAVEPKNESREWLTRVLGQDG--MCDVF 288
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
R HP + A+TCW +GA+ +YG+RID+ LC
Sbjct: 289 REVHPNVK-AFTCWNVASGAQINDYGSRIDYFLC 321
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 458 LMETSIPLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
L + + P C GH E C RVVKK P F R FF C R GP +NP +CG+F W
Sbjct: 463 LAKMAPPKCAGHGETCKVRVVKKRESPHFARVFFCCPRPAGPRTNPACDCGFFAW 517
>gi|62085802|gb|AAX63292.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 202/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V + Q +L+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 369 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDFATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ + + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQL---PTRERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|339236551|ref|XP_003379830.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
gi|316977461|gb|EFV60557.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
Length = 462
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 10 DELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
D +D+EGR + T H + + N+Y PR D E R F+L F +LQ
Sbjct: 105 DNFDTLDNEGRMLATRHKLTNCNNAEYLFILNIYCPRVDPEQMDRQNFRLAFLKLLQHCT 164
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES----GGSFFDVF 117
E LL G + ++GD+N+ ID CD +F +E RIW L ++ G D++
Sbjct: 165 ECLLNSGNYVLILGDMNLCHKRIDHCDPDQEFDTDEARIWLCEFLYDTDKNADGKMVDLY 224
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
R +P + +TCW S A N+GTRID+IL
Sbjct: 225 RIHYPNKGRMFTCWNSQKRARILNFGTRIDYIL 257
>gi|302843683|ref|XP_002953383.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
gi|300261480|gb|EFJ45693.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
Length = 705
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 8 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFLL 65
S ++L +D EGR VITDHG F+L NVYGP SE+ R+ +KLQF+ LQ R + L
Sbjct: 113 SPEQLRNLDGEGRVVITDHGGFVLVNVYGPAITSEERAEERMSYKLQFYRALQLRLDGFL 172
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGP-DF-AKNEFRIWFRSML 106
+GRR+ +VGDLNIAP +D C A P DF A R W R +L
Sbjct: 173 AEGRRVLLVGDLNIAPDYMDVCGATPRDFNACRADRAWLRGLL 215
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 448 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 507
A L WR+IQ M+ P C GHKEPC R VKK G GR+F+ CAR +G P C
Sbjct: 616 AALAWRQIQDQMKP--PRCSGHKEPCAVRTVKKRGDNNGRQFWCCARPDG--LPPNGRCD 671
Query: 508 YFKWA 512
+F+WA
Sbjct: 672 FFQWA 676
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
F D FR+ HP+R+ AYTCW +++GA NYG+RIDH+L A
Sbjct: 301 FVDAFRAFHPKRQHAYTCWNTSSGARVNNYGSRIDHVLVA 340
>gi|384253850|gb|EIE27324.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 211
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 48/207 (23%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
+ +++L +D++GRCVITDHG F+LFN YGP + + R FK+Q++
Sbjct: 21 YRREDLEMVDNQGRCVITDHGAFVLFNCYGPAVTNITSDRFAFKMQYYE----------- 69
Query: 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
A DR D R WFR L + GG D+FR HP ++
Sbjct: 70 -------------ATMLTDRPD----------RAWFRRWLHQEGGPLVDLFRKMHPSEQK 106
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK-HDLQSHNFVTCHVNECDILIDYKRWK 185
AYT W T A + N+G+R+D +L P K H D+ D + W
Sbjct: 107 AYTVWNMATLARKRNHGSRVDFLLAGRPDPAMKDHTAAPEEKELAGEPFEDLFTDVRIW- 165
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCL 212
+ EGSDHAPV+ L
Sbjct: 166 ------------STFEGSDHAPVWADL 180
>gi|409040708|gb|EKM50195.1| hypothetical protein PHACADRAFT_153651 [Phanerochaete carnosa
HHB-10118-sp]
Length = 496
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGR ++ D G F+L NVY P S+ R+ FK+ + ++ +R + +GR + V+
Sbjct: 119 LDSEGRALVLDFGLFVLVNVYCPNETSD--ARLPFKMNYHLLVAERVRRFIDEGREVIVM 176
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NI D CD + F R WFR L + G D R+ P R+ +T
Sbjct: 177 GDMNICATPQDHCDGHLTSVREVFWDHPARAWFRHWL-DPDGPMVDAVRTFWPARKGMFT 235
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KH-DLQSHNFVTCHVNECDILID 180
CW T A + NYGTR+D+IL L KH D+Q + H C I ID
Sbjct: 236 CWNLRTQARETNYGTRVDYILVTKGLLKWVKHGDIQPSVKGSDH---CPIYID 285
>gi|62085884|gb|AAX63333.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/543 (23%), Positives = 201/543 (37%), Gaps = 123/543 (22%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+I C+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 310
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q SL+++ +P ++ + + R ++ G + G
Sbjct: 311 MNPANMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 368
Query: 263 LPAESNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P + S G T D + + +++ C + + V + + +E R
Sbjct: 369 SP-QVESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 421
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 422 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 476
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S D E K
Sbjct: 477 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAK 533
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
W ++ L + +P C+ H EPC++ V KKPG GR F++ R
Sbjct: 534 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYISPRP 576
Query: 496 EGP 498
GP
Sbjct: 577 LGP 579
>gi|400595545|gb|EJP63340.1| DNA lyase [Beauveria bassiana ARSEF 2860]
Length = 654
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 131/580 (22%), Positives = 210/580 (36%), Gaps = 146/580 (25%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 132 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 188
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 189 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDR 248
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 249 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 300
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------------- 214
++ E L GSDH PVY + +
Sbjct: 301 DSNIQEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEV 336
Query: 215 ------------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
V Q +L+++ +P ++ + + R ++ G + G
Sbjct: 337 MNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGD 394
Query: 263 LPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 318
P N G T D + + ++ C + + V + + +E R
Sbjct: 395 SPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQ 447
Query: 319 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 378
+ + T +N S D KAK S GQ +L+ FF ++ V+ D S +
Sbjct: 448 TKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGE 502
Query: 379 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKK 435
+ V + P+++ S++ PV + S + D E K
Sbjct: 503 LAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPIKVFDPIEAK 559
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT----------- 484
W ++ L + +P C+ H EPC++ V KKPG
Sbjct: 560 E--------------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGGCLPRGGKA 602
Query: 485 --------FGRRFFVCARAEGPASNPEAN----CGYFKWA 512
GR F++C R GP+ E + CG F W+
Sbjct: 603 DDSMIGNPAGRSFYICPRPLGPSGEKERDTEWRCGTFIWS 642
>gi|440633305|gb|ELR03224.1| hypothetical protein GMDG_01207 [Geomyces destructans 20631-21]
Length = 657
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 133/570 (23%), Positives = 209/570 (36%), Gaps = 129/570 (22%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L Y P + D R F+L F +VL R L+ G+R+ +
Sbjct: 137 LDSEGRCLILEFPAFVLIGTYCPA--NRDETRDHFRLGFLNVLDARIRNLVNAGKRVILA 194
Query: 75 GDLNIAPAAIDRCDAGPDF------AKNEFRIWFRSM---LVESGGSF------------ 113
GDLN+ ID +A A+ F R + LVE G +
Sbjct: 195 GDLNVIREEIDTANAQERMRKEGVTAEEFFSAPARRLINHLVEHGNVYGERDECRARPVL 254
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
D+ R H RR +TCW A N+G+RID+I CA
Sbjct: 255 TDICRKFHNRRRGMFTCWDQKKNARPGNFGSRIDYI-CAS-------------------- 293
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP--------- 224
+D K W + + L GSDH PVY + + ++ T
Sbjct: 294 -----LDCKDWFA------ESNIQEGLMGSDHCPVYAVISDKVQLDGRETDIKDVMNAVG 342
Query: 225 -----------------SLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKF---SG 261
+++ LP R ++ + + + QG+S G
Sbjct: 343 MFQDGFRQRDWTIKDLLPTSAKLLPEFDRRRNIRDMFIKMPPATPLT-QGESLTSLAKVG 401
Query: 262 SLP-AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 320
S P ES +TGD +E R L + + GV S K + +
Sbjct: 402 SEPRPESPTTGDGCGVAE---RGLRDSFSTSPQPGVVKEKEGDTSSCGTGKVVNSTSSKG 458
Query: 321 NVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 380
++ S Q P + +A + + Q +L+ FF ++ + N
Sbjct: 459 KRSAESLHLQRDQKRTKPANA-KALTSKNRQGMAQSTLQGFFTPKTQIPRGQPN------ 511
Query: 381 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE-----KK 435
+N N + ++ S+H + P + + + + SH+ E K+
Sbjct: 512 VNANTPPSSST-------GSNHSPSPYPRKELALGPDQ--DTQEDLSSHNASEGYNAPKE 562
Query: 436 GKRF-----LDKERNNVALL----EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 486
K +D E + + + W RI L P C+ H +PC KKPG G
Sbjct: 563 AKYLSTPVDIDNEEDIIDPIITKESWSRI--LGTRIAPRCE-HNQPCRMLSTKKPGMNCG 619
Query: 487 RRFFVCARAEGPASNPEAN----CGYFKWA 512
R F++CAR GP+ E CG F W+
Sbjct: 620 RSFYICARPLGPSGEKERGTQWRCGTFIWS 649
>gi|302505072|ref|XP_003014757.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
gi|291178063|gb|EFE33854.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
Length = 601
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 88 IEQMEELSEVDPITVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 145
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVES 109
L+ G+R+ + GDLN ID A K E+ RI+ R LV
Sbjct: 146 VRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRP 203
Query: 110 GGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 157
GS D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 204 VGSTGDTHDTETLPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS----- 258
Query: 158 QKHDLQSHNFVTCHVNECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
+++S FV ++ E I+ + Y+ +K + + +GSDH PVY +
Sbjct: 259 --DNIRSW-FVESNIQEGLIVCVKLELIYR--------SFKNLLISNEQGSDHCPVYASI 307
Query: 213 GE 214
+
Sbjct: 308 SD 309
>gi|168008755|ref|XP_001757072.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 41/217 (18%)
Query: 17 SEGRCVITDHGHFILFNVYGPRADSEDT--VRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+EGR + TDHG F+L NVY P + D R+ FK+++ L++ + L+ G+ I +V
Sbjct: 186 NEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTCDDLVRSGKHIVIV 245
Query: 75 GDLNIAPAAID---RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
GD N+A ID R ++ E R W L + D++R HP+ + ++ W
Sbjct: 246 GDFNVAHKDIDVHSRWKVEEIYSLEE-REWLDGFL----SRYIDLYRHFHPDEKNIFSVW 300
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
+ A N G RID+ +C + F+T V E DI+ K+W
Sbjct: 301 DQKSDARTRNEGLRIDYAIC------------NEGFLT-EVLETDIVKMQKQW------- 340
Query: 192 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
SDHA V + L E P +P H P+L+S
Sbjct: 341 -----------SDHAAVVVTLKEQPNLPPHPAPALSS 366
>gi|111054099|gb|ABH04240.1| DNA lyase-like protein [Pseudocercospora fijiensis]
Length = 622
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 118/542 (21%), Positives = 202/542 (37%), Gaps = 100/542 (18%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
M + + ++ +D+EGRCV+ F+LF VY P + + +R F+ F L R
Sbjct: 121 MADIAEIGGEDPAGLDAEGRCVVVKSPAFVLFGVYSPA--NSNGLRDGFRHGFVCALDHR 178
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFRIWFRSMLV 107
L+ G+ + +VGDLN+ ID +GP +F R F L+
Sbjct: 179 IRNLIKAGKSVILVGDLNVTRHEID---SGPTLEEMRKGLITHEEFISGPNRRIFNQQLI 235
Query: 108 ES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ G F+D R HP+R+ YT W + A N+G+RID +L +
Sbjct: 236 DGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDFVLVSEALR 295
Query: 157 H--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ ++Q + H C + ID++ N G L+ + V++
Sbjct: 296 SWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPPAVFVGGER 347
Query: 215 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 274
E STP +++ +P ++T+ S+ + K + P S +
Sbjct: 348 KQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ--------PTPPGSVAQAD 398
Query: 275 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 334
D V E+EG + + I+ ++
Sbjct: 399 DSQPAV-----------------------ETEG------------STAPAKRKISVSTTP 423
Query: 335 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 394
P ++ KA ++ GQ SLK FF +S + ++ D
Sbjct: 424 KEYPLKKQKSDIKAAPTK-GQQSLKGFFQAKS----------VPITAAAQSAEKDLKNET 472
Query: 395 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 454
E+ + ++ + + S + ++S + D D K + +W
Sbjct: 473 EDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSPRKFASKLASAEKSQHQWGA 532
Query: 455 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFK 510
+ PLC+GH EPC + KK G GR F++CAR GP+ E CG F
Sbjct: 533 L--FSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQWRCGTFI 590
Query: 511 WA 512
W+
Sbjct: 591 WS 592
>gi|212544628|ref|XP_002152468.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
gi|210065437|gb|EEA19531.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
Length = 607
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 98/237 (41%), Gaps = 60/237 (25%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
ME L D D + +D EGRCVI + F+LF +Y P A D R F+ F +L R
Sbjct: 113 MEQLNDLQIDPAV-LDCEGRCVILEFPAFVLFGLYCPAA--RDETRDHFRQGFITLLDAR 169
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESG 110
L+ G+R+ V GDLNI+ ID R G + F R F + LVE
Sbjct: 170 IRNLVAMGKRVIVTGDLNISAGEIDSAHLTEAIRKGTGSEDEFVSGPVRRVF-NQLVEGA 228
Query: 111 GS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
D+ RS HP+RR YTCW + A NYG RID+IL +
Sbjct: 229 KVIGKRDSGREVPVLHDICRSFHPDRRGMYTCWETRVNARPGNYGARIDYILSS------ 282
Query: 159 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGE 214
+D K W W +G + L GSDH PVY E
Sbjct: 283 --------------------LDIKDW-------WSEGNIQEGLMGSDHCPVYAVFKE 312
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W ++ + ++P C+ H+EPC+ KK G GR F++C+R GP E C
Sbjct: 538 WSKL--FTKKAMPRCEDHQEPCIMLTTKKAGINCGRSFWMCSRPLGPTGQSEKGTQWRCK 595
Query: 508 YFKWA 512
F WA
Sbjct: 596 TFIWA 600
>gi|302837660|ref|XP_002950389.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
Length = 1732
Score = 99.8 bits (247), Expect = 3e-18, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 38/230 (16%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVLQKRWEFLLCQG 68
DE ++D+EGR V+TDHG F+L NVY P A D + R+ +KL F L+ + + L G
Sbjct: 115 DERPELDTEGRFVLTDHGAFVLLNVYVPNAGDRPERARLPYKLAFLRALRTKMDELTALG 174
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG---SFFDVFRSKHPERR 125
R++ +VGDLNIA +R D P + ++ + L E G ++ DV+R HP+
Sbjct: 175 RQVVLVGDLNIAA---ERRDVHPTLDFDS--MYDKQELAELSGLIAAYPDVWRHLHPDTE 229
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
+YT W T A FN G RID++L + L +V C+IL
Sbjct: 230 GSYTVWDERTSARAFNTGLRIDYVLVSPGLLP-------------YVQSCEILT-----A 271
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI-PQHSTPSLASRYLPII 234
P+W SDHA + + L + P+ ++ R LP +
Sbjct: 272 AAIPPKW----------SDHAAILLTLRVQRAVEPESASEQALPRPLPSV 311
>gi|396469847|ref|XP_003838506.1| similar to DNA lyase [Leptosphaeria maculans JN3]
gi|312215074|emb|CBX95027.1| similar to DNA lyase [Leptosphaeria maculans JN3]
Length = 650
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 123/578 (21%), Positives = 200/578 (34%), Gaps = 149/578 (25%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+ D + +D+EGRC++ + F+LF VY P + + +R F+L F +L R
Sbjct: 147 VADIGDVDPAALDAEGRCLVLEFPAFVLFGVYSPA--NSNGLRDDFRLGFLMMLDARIRN 204
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVESG--- 110
L G+ + + GDLN++ ID A ++ R F +L
Sbjct: 205 LKKMGKNLILTGDLNVSRDLIDTAKADDHMRAEGMTHEEYLSTPNRRIFNQLLFNGKVPG 264
Query: 111 --------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
+D+ R HP+R +T W A N+G+RID ILC+
Sbjct: 265 KRDKGREEPVLYDLCREYHPDREGMFTHWEQKINARPGNFGSRIDFILCS---------- 314
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI---- 218
I+ K W + + L GSDH PVY + +
Sbjct: 315 ----------------IEIKDW------FMEANIQEGLMGSDHCPVYAVTKDKVSVGRSQ 352
Query: 219 -----------------------------------PQHSTPSLASRYLPII---RGVQQT 240
P P+L+ + LP R ++
Sbjct: 353 EAAAEAEHPEEEKHILDSMNPTGMFQGGVRLREYDPSRDMPALSGKRLPEFTKRRNIRDM 412
Query: 241 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 300
+ A +S G+ P+ + + + +++L S+
Sbjct: 413 FSKKPALSKSASTTRSTLNEGTAPSSAMIADPSSTATTEANKAL----------APPTST 462
Query: 301 SNQESEGEFT--KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSL 358
+N + T + E R SA+ + T+ + SN+ P K GQ SL
Sbjct: 463 ANGDKAPLVTPLNSPEKRRASASASPGKTLKRSKSNN--PVAGSNPTK-------GQQSL 513
Query: 359 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE 418
K FF RS T+ S +++E P S + +P D S
Sbjct: 514 KGFFLTRSK-------------------PTEPSPTKDEAPLSVPSTPAVPTGDPSS--QS 552
Query: 419 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 478
G S + +E + + W ++ + P C+ H EPC+
Sbjct: 553 ATGAPDLSVSQTSETYDPDPLATQEASRES---WSKL--FSKKPTPRCE-HGEPCITLTT 606
Query: 479 KKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
KKPG GR+F++C R GP+ E CG F W+
Sbjct: 607 KKPGMNCGRQFYMCPRPIGPSGQKETGTQWRCGTFIWS 644
>gi|384498310|gb|EIE88801.1| hypothetical protein RO3G_13512 [Rhizopus delemar RA 99-880]
Length = 359
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 43/225 (19%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRC+I + +L N+Y P SE R +F + ++ +QKR E L +G+++ +V
Sbjct: 65 LDAEGRCIILEFECLVLINIYFPNFASE--ARGEFIMDYYGCVQKRIEDYLAKGQQVVLV 122
Query: 75 GDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GD+N ID CD DF R W L+ GS D+ R HP+R+
Sbjct: 123 GDVNAVHDTIDHCDPKESMRQHGLKDFKDLPHRRWV-DRLIGPQGSMIDMARYYHPDRKG 181
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
+TCW + A NYGTRID++L + H LQ FV +
Sbjct: 182 MFTCWNTRINARPANYGTRIDYVLAS-------HGLQP-RFVYADIQ------------- 220
Query: 187 GNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 231
++ GSDH PVY PE + + P S L
Sbjct: 221 -----------PQIIGSDHCPVYADFAIDPEQMRCAQPDTTSPLL 254
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
E + + W + Q E P C GH PC+ R V K G GR F+VC++ GP P
Sbjct: 288 EIKDKQVTAWSALFQAPER--PRCSGHDAPCLERTVTKKGKNLGRTFYVCSKPVGPQDGP 345
Query: 503 EA--NCGYFKW 511
+ +C +F W
Sbjct: 346 KEHYSCHHFSW 356
>gi|367041942|ref|XP_003651351.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
gi|346998613|gb|AEO65015.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
Length = 640
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 134/566 (23%), Positives = 210/566 (37%), Gaps = 135/566 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R +F+ + + R L+ G+++F+
Sbjct: 136 LDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFREAYIDAIDVRVRNLVAMGKQVFLC 193
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEFR----------IWFRSMLVESGGS------- 112
GDLNI + +D K +EF + F +V GG
Sbjct: 194 GDLNIVRSPLDTAGLAERLRKEGMTLDEFMSTPPRRLLNHLVFGGTVV--GGRDEGREEP 251
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+D+ R HP R +TCW + A N+G+RID++LC+ F+ +
Sbjct: 252 VLWDLCREFHPTRAGMFTCWETKKNARPGNFGSRIDYVLCSSGIKDW--------FIDAN 303
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSL 226
+ E L GSDH PVY +G+ +P +
Sbjct: 304 IQEG------------------------LLGSDHCPVYATIGDAVSFGDTNVPIEDVMNP 339
Query: 227 ASRYLPIIR-------GVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG---DTEDC 276
A + R + T ++ + + + + F S P+ ST D +D
Sbjct: 340 AGMFKGGKRLREWSSKDLLPTSAKLIPEFDRRQSIREMFFKKSAPSAKTSTQAQMDNQDG 399
Query: 277 SENVDRSLNNYCDSGILQ--------------GVYCSSSNQESEGEFTKTIENCRDS-AN 321
+D + N +GIL+ V SS+ S K++ R + ++
Sbjct: 400 RGVLD-AANGVKTTGILENNTTPGSDRNPTIASVSVSSTTPNSAASPQKSVPTKRQAESS 458
Query: 322 VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 381
A +G N ++RA + Q +LK FF ++ V +D
Sbjct: 459 TAVRRPQKKGKGN------LNRAGSTNSTTGSSQSTLKGFFKPKTPVPDED--------- 503
Query: 382 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC-SVHELHGV--NSSVCSHD-------Q 431
T E PE D C V G NS + D Q
Sbjct: 504 ----PPTPAQGVDESSPELK--------ADRDCPGVQTASGAESNSGTSTGDDVDNTLEQ 551
Query: 432 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
+K +K + + E W ++ L + +P C+ H E C V KKPG GR FF
Sbjct: 552 SQKPEGSSSEKVFDPIQAKESWGKL--LGKRVVPKCE-HGEDCQMLVTKKPGINCGRSFF 608
Query: 491 VCARAEGPASNPEAN----CGYFKWA 512
+CAR GP+ + E C F W+
Sbjct: 609 MCARPLGPSGDKEQGTEFRCRTFIWS 634
>gi|358369104|dbj|GAA85719.1| DNA lyase Apn2 [Aspergillus kawachii IFO 4308]
Length = 626
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E L F D +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 124 IEQLSQFDVDAAT-LDSEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRRNFIDLMDAR 180
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLV--- 107
L+ G+R+FV GDLNI+ ID AG +F R F +L
Sbjct: 181 IRNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHARRVFNQLLSDGK 240
Query: 108 -----ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
E G D+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 241 VIGEREEGREQPVLHDICRSFHPDRKGMYTCWEQRINARPGNYGSRIDYVLCS------- 293
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215
D+Q F ++ E L GSDH PVY E
Sbjct: 294 LDMQDW-FCDSNIQEG------------------------LMGSDHCPVYATFKET 324
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 506
+W ++ + PLC+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 555 DWSKL--FTKKRAPLCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRC 612
Query: 507 GYFKWA 512
F WA
Sbjct: 613 PTFIWA 618
>gi|367021856|ref|XP_003660213.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
gi|347007480|gb|AEO54968.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
Length = 644
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 130/558 (23%), Positives = 210/558 (37%), Gaps = 116/558 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R +++ F + R L+ G+++F+
Sbjct: 136 LDSEGRCIILEFPAFVLIGVYSPA--TRDETRTEYREAFIDAMDARVRNLVAMGKQVFLC 193
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGGS------------ 112
GDLNI +D K EF R + +L GG
Sbjct: 194 GDLNIIRDELDAAGLPERLRKEGVTLEEFFATHSRRFLNQLLF--GGRVIGERQEGREQP 251
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+D+ R HP R YTCW + A N+G RID++LC+ F+ +
Sbjct: 252 VLWDLCREFHPTRAGMYTCWETRKNARPGNFGNRIDYVLCSSGIKDW--------FIDSN 303
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI------------- 218
+ E L GSDH PVY + + ++
Sbjct: 304 IQEG------------------------LLGSDHCPVYATIADTVDVGGSQVHIEDIMNP 339
Query: 219 PQHSTPSLASR------YLPIIRGV------QQTLVSVLMKREVAKQGKSCK----FSGS 262
P + R LPI + +Q++ + K+ A + S S
Sbjct: 340 PGMFKDGVRQREWCQKDLLPISAKLIPEFDRRQSIKDMFFKKASASAKTTSSPNTISSQS 399
Query: 263 LPAESNSTGDTEDCSENVDRSLNNYCDS-GILQGVYCSSSNQESEGEFTKTIENCRDSAN 321
P ++ G +++ ++ S++ D + ++SN + K I R +A+
Sbjct: 400 TPTDTVPGGGSDETQKDSTVSMSQAIDQPASTTTLPNTASNNITSVPPQKPIPQKRQAAS 459
Query: 322 VASHSTITQGSSNHISPFHVDRARKKAKKSQLG--QLSLKSFFHKRSNVSHDDNNSITDT 379
S + + +S R+ + K+ G Q SLK FF ++ ++ + +
Sbjct: 460 STSPNRPQKKGKLALS-------RESSSKTTAGFSQSSLKGFFKPKTPTAN--ATAAIEA 510
Query: 380 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 439
N ++T E PES T S NSS S + + F
Sbjct: 511 GDTTNPAITPDPNPSE--PESKQD------TSASQGNSSQSTKNSSGDSVGESPRTESSF 562
Query: 440 LDKERNNV-ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
DK + + A W ++ L + +P C+ H E C V KK G GR FF+CAR GP
Sbjct: 563 TDKVFDPIQAKDSWSKL--LGKRVVPKCE-HGEDCQMLVTKKAGVNCGRAFFMCARPLGP 619
Query: 499 ASNPEAN----CGYFKWA 512
+ E C F W+
Sbjct: 620 SGEKEQGTEFRCRTFIWS 637
>gi|391868669|gb|EIT77879.1| apyrimidinic endonuclease [Aspergillus oryzae 3.042]
Length = 627
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 80/160 (50%), Gaps = 25/160 (15%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 137 LDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 194
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGG------------S 112
GDLNI+ ID A K +EF R F + LV SG +
Sbjct: 195 GDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQPA 253
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
FD+ RS HP RR YTCW A NYG+RID++LC+
Sbjct: 254 LFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS 293
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 506
+W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 559 DWSKL--FTKKPVPKCEGHQEPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRC 616
Query: 507 GYFKWA 512
F WA
Sbjct: 617 PTFIWA 622
>gi|402222945|gb|EJU03010.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 114/272 (41%), Gaps = 63/272 (23%)
Query: 4 LEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV 56
L DF DE LL++D+EGR +I D G F+L NVY P +D R +K F +
Sbjct: 121 LMDFIPDEDDRLPSGLLELDNEGRALILDLGLFVLINVYCPADTVKD--RFSYKFNFHRL 178
Query: 57 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFR----IWFRSMLVESGGS 112
LQ+R L + + +VGDLN+ + +D + P+ K + W + V+ G
Sbjct: 179 LQERVRLLQEENCEVIIVGDLNMCASRMDDGEPVPESKKRNWNEEPWDWLKKW-VQPNGR 237
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
DV R HP+R + YT W S N+G R+D+ILC
Sbjct: 238 LVDVTRRFHPDRTKMYTFWESKKDGRTANFGLRLDYILCTE------------------- 278
Query: 173 NECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYM--------------CL-GEVP 216
G P KG + ++ GSDH PVY+ CL E+
Sbjct: 279 --------------GLLPWLKGSDILPQVLGSDHCPVYVDLHDEIILEDGTKKCLRDEMK 324
Query: 217 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 248
+ P A+R+ P + G Q + S + +
Sbjct: 325 QTEITPWPRFATRFWPELSGKQTKISSFFVTK 356
>gi|327306001|ref|XP_003237692.1| DNA lyase [Trichophyton rubrum CBS 118892]
gi|326460690|gb|EGD86143.1| DNA lyase [Trichophyton rubrum CBS 118892]
Length = 603
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 55/235 (23%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T R F+L FF++L+ R
Sbjct: 124 IEQMEELSEVDPIIVDSEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVR 181
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESG 110
L+ G+R+ + GDLN ID A ++ R+ F ++ G
Sbjct: 182 VRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYPARLIFNRLVRPVG 241
Query: 111 GS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+ D+ R HP R YTCW A NYG+RID+ILC+
Sbjct: 242 STADTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS------- 294
Query: 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+++S FV ++ E L GSDH PVY + +
Sbjct: 295 DNIRSW-FVESNIQEG------------------------LMGSDHCPVYASISD 324
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W ++ +P C+GH E C++ V KKPG GR F++C R GP+ + E+ C
Sbjct: 535 WSKV--FTRKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCP 592
Query: 508 YFKWA 512
F W+
Sbjct: 593 TFIWS 597
>gi|256086538|ref|XP_002579455.1| ap endonuclease [Schistosoma mansoni]
Length = 426
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 117/274 (42%), Gaps = 58/274 (21%)
Query: 29 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC- 87
I+ ++Y PR + E+ R+ +K F +Q E LL + + + GD NI ID C
Sbjct: 150 LIVLSIYFPRLNPENVERLNYKHLFQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCA 208
Query: 88 --DAGPDFAKNEFRIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWP 132
+ D N FR WF +L+E F D+FR HP R+ A+TCW
Sbjct: 209 PDELMMDKFSNSFRQWFDQLLIEEQQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWS 268
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
S T A Q NYG R+D+IL D++ +T +++ +I
Sbjct: 269 SRTNARQTNYGVRLDYIL---------FDMKLVEIITT-ISDNNI--------------- 303
Query: 193 KGGMSTRLEGSDHAPVYMCLGEVPE------IPQHSTPSLASRYLPIIRGVQQTLVSVLM 246
+ + + + GSDH P+Y ++P I +S P S Y P + Q L S +M
Sbjct: 304 QADLMSHINGSDHCPIY---ADLPYFYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVM 360
Query: 247 KREVAKQGKSCKFSGSLPAESNSTGDTEDCSENV 280
+ +K K S++T + C NV
Sbjct: 361 SKSHSKVTKQA-------FTSHNTTTSVSCVRNV 387
>gi|345565933|gb|EGX48880.1| hypothetical protein AOL_s00079g101 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 32/288 (11%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G K++ + +DSEGR ++ D G F+L Y P ED+ R F++ + L +R
Sbjct: 92 GYPTIDKEDGVVLDSEGRGLVVDFGLFVLIGTYCP-VGREDSARQDFRMAWLKALDERIR 150
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDA-------GPDFAKNEFRIW--------FRSMLV 107
L G+R+ VGD+NIAP ID DA GPD +E W RS+
Sbjct: 151 NLTKMGKRVVTVGDINIAPEPIDSADAWEMQKRLGPD--SSEMLEWNETPAKKLLRSLCE 208
Query: 108 ESGGS-FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC--LHQKHDLQS 164
S + DV R P+R YT W + A NYG+RID+++ + + D+Q+
Sbjct: 209 PSEEAVMVDVVRQFFPDRVAMYTHWETKINARPGNYGSRIDYVVASSSMKDWFESADIQN 268
Query: 165 HNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP 224
+ H C + Y KP G L+ + A V++ E+P P
Sbjct: 269 GLHGSDH---CPV---YAVLKPEI--ELDGEKRVLLDLVNPAGVFVGGERKQELP--PPP 318
Query: 225 SLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGD 272
+++R +P RG ++++ + ++ VAK S PAE + D
Sbjct: 319 KMSARLIPHFRG-RRSIKDMFQRKTVAKVVSIAGSSTQEPAEPSGEND 365
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA--------SNPE 503
W ++ + S PLC GH EP +KPG GR F++CAR GP+ SN E
Sbjct: 502 WNKL--FAKPSAPLCDGHSEPAKKMQTRKPGLNNGRWFWMCARPVGPSGPKERSRRSNDE 559
Query: 504 ANCGYFKW 511
C YFKW
Sbjct: 560 WRCDYFKW 567
>gi|449548040|gb|EMD39007.1| hypothetical protein CERSUDRAFT_47445 [Ceriporiopsis subvermispora
B]
Length = 537
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 64/271 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFV 73
+DSEGR V+ D G F+L NVY P + D R FK+ + +LQ+R L+ + RR + V
Sbjct: 137 LDSEGRAVVVDFGLFVLINVYCP--NETDETRTSFKMNYHLMLQERVRKLIEEERREVIV 194
Query: 74 VGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+GD+NI I+ + F ++ R+WF+ L + G D+ R P+R+ +
Sbjct: 195 LGDVNICANPIEHAEGNQPSFLAAFYEHPARLWFKQWL-DPVGPMVDIVRHFWPDRKGMF 253
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYKRWKPG 187
TCW A + NYG+R+D+IL L KH
Sbjct: 254 TCWNMKIMARESNYGSRVDYILVTKGLLPWIKH--------------------------- 286
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL--------GEVPEIP--------QHSTPSLASRYL 231
G ++GSDH P+Y+ L GEV ++ + P +A+++
Sbjct: 287 ------GDTQPSIKGSDHCPLYIDLHEEITSETGEVMKLRDAMKQDDLRREPPRIAAKFW 340
Query: 232 PIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 262
G +QT++S KQG K S S
Sbjct: 341 EEYSG-KQTVLSAFF----GKQGDKAKISPS 366
>gi|340372931|ref|XP_003384997.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Amphimedon queenslandica]
Length = 438
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 6 DFSKDELLKIDSEGRCVITDHGH-----FILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
D + +E ++++EGR ++T+H ++ NVY PR D ++ R+ +K+ F VL +R
Sbjct: 107 DLNDEETEQLNNEGRGLLTEHLQENGRGLVIINVYCPRVDPDNPDRLPYKIHFLSVLHER 166
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAK----NEFRIWFRSMLVE-SGGSF 113
+ L G+ + + GD N ID + P F K E + F S +
Sbjct: 167 TKRLQAGGKDVLICGDFNCVLDIIDSAAMEDMPTFTKEPKTKELLLSFISKTPPITNEVL 226
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
D +R HP R +YTCW + TG+ Q NYG RID+IL +
Sbjct: 227 LDTYRYLHPTERGSYTCWCTATGSRQLNYGQRIDYILAS 265
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 451 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510
+W+++ + PLC GHKEP V RVVKKPGP R+F+VC R +G +P A+C +FK
Sbjct: 377 DWQKVFK-APPKAPLCSGHKEPAVLRVVKKPGPNHNRKFYVCGRPDGSKHDPNASCNFFK 435
Query: 511 W 511
W
Sbjct: 436 W 436
>gi|350631687|gb|EHA20058.1| Hypothetical protein ASPNIDRAFT_48146 [Aspergillus niger ATCC 1015]
Length = 575
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 98/238 (41%), Gaps = 57/238 (23%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E S+ E+ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 73 IEQLSQLEVDAATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRRSFIDLMDARI 130
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLV---- 107
L+ G+R+FV GDLNI+ ID AG +F R +L
Sbjct: 131 RNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHARRVLNQLLSDGKV 190
Query: 108 ----ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
E G D+ RS HP R+ YTCW A NYG+RID++LC+
Sbjct: 191 IGEREEGREQPVLHDICRSFHPGRKGMYTCWEQRINARPGNYGSRIDYVLCS-------L 243
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
D+Q F ++ E L GSDH PVY E I
Sbjct: 244 DMQEW-FCDSNIQEG------------------------LMGSDHCPVYAMFKETVNI 276
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 515 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 567
>gi|134079677|emb|CAK97103.1| unnamed protein product [Aspergillus niger]
Length = 572
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 96/238 (40%), Gaps = 57/238 (23%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E S+ E+ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 113 IEQLSQLEVDAATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRRSFIDLMDARI 170
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLV---- 107
L+ G+R+FV GDLNI+ ID AG +F R +L
Sbjct: 171 RNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHARRVLNQLLSDGKV 230
Query: 108 ----ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
E G D+ RS HP R+ YTCW A NYG+RID++LC+
Sbjct: 231 IGEREEGREQPVLHDICRSFHPGRKGMYTCWEQRINARPGNYGSRIDYVLCS-------- 282
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
+D + W + L GSDH PVY E I
Sbjct: 283 ------------------LDMQEWF------CDSNIQEGLMGSDHCPVYAMFKETVNI 316
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 508
PLC+GH+EPC++ KKPG GR F++C R GP+ N E +
Sbjct: 480 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKASAF 524
>gi|451852174|gb|EMD65469.1| hypothetical protein COCSADRAFT_169947 [Cochliobolus sativus
ND90Pr]
Length = 632
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/562 (22%), Positives = 199/562 (35%), Gaps = 139/562 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGRC++ + F+LF VY P + + +R F++ F L+ R L G+ + +
Sbjct: 138 LDLEGRCLVLEFPAFVLFGVYSPA--NSNGLRDGFRIGFLIALETRIRNLTKMGKNVVLT 195
Query: 75 GDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSF 113
GDLN++ ID A ++ R F +L+
Sbjct: 196 GDLNVSRDLIDTARADEHIRSEGMTHEEYLSTPNRRIFNQLLLNGKVPGQRDEGREEPVL 255
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R +T W A N+G+RID ILC+
Sbjct: 256 YDLCREFHPDREGMFTHWEQKINARPSNFGSRIDFILCS--------------------- 294
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VPEI-------------- 218
I K W + L GSDH PVY L + VP +
Sbjct: 295 -----ITIKDW------FQDANIQEGLMGSDHCPVYAVLKDKVPVLRTSGPDSVEEEVHI 343
Query: 219 --------------------PQHSTPSLASRYLPII---RGVQQTLV--SVLMKREVAKQ 253
P P+L+ + LP R ++ S K
Sbjct: 344 LDLMNPAGMFKDGVRQRDYDPAKDVPALSGKLLPEFTKRRNIRDMFSKKSTPPKPNPNPT 403
Query: 254 GKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTI 313
+ + A+ ST T + E +DR L ++ + + + K+
Sbjct: 404 PAVAQLDVTTKADVASTASTAE--EQMDRDLALAIEASKADMLADTENKTTFSQSPLKSA 461
Query: 314 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 373
E R SA+ + I +G ++ + K GQ SLK FF S + D
Sbjct: 462 EKRRASASASPGKPIKRGKPGALA---------VSTKGNKGQQSLKGFFQTHSKST--DP 510
Query: 374 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 433
+ D + +V++ T + SQ H S P T N S S +
Sbjct: 511 ITPNDAAPSVSSLKTTDTPSQNATEMPHPPSP--PST-----------ANESFDSDPRAS 557
Query: 434 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 493
++ R W ++ + + P C+ H E C+ KKPG GR+F+VC
Sbjct: 558 QEASR-----------EGWTKL--FSKKAAPRCE-HGEHCITLTTKKPGVNCGRQFWVCP 603
Query: 494 RAEGPASNPEAN----CGYFKW 511
R GP+ + E CG F W
Sbjct: 604 RPIGPSGHKEVGTQWRCGTFIW 625
>gi|350645665|emb|CCD59640.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 518
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 52/271 (19%)
Query: 29 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC- 87
I+ ++Y PR + E+ R+ +K F +Q E LL + + + GD NI ID C
Sbjct: 150 LIVLSIYFPRLNPENVERLNYKHLFQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCA 208
Query: 88 --DAGPDFAKNEFRIWFRSMLV-----------ESGG--SFFDVFRSKHPERREAYTCWP 132
+ D N FR WF +L+ S G F D+FR HP R+ A+TCW
Sbjct: 209 PDELMMDKFSNSFRQWFDQLLIGEQQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWS 268
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
S T A Q NYG R+D+IL D++ +T +++ +I D
Sbjct: 269 SRTNARQTNYGVRLDYIL---------FDMKLVEIITT-ISDNNIQAD------------ 306
Query: 193 KGGMSTRLEGSDHAPVYMCLGEVPE---IPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 249
+ + + GSDH P+Y L I +S P S Y P + Q L S +M +
Sbjct: 307 ---LMSHINGSDHCPIYADLPYFYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKS 363
Query: 250 VAKQGKSCKFSGSLPAESNSTGDTEDCSENV 280
+K K S++T + C NV
Sbjct: 364 HSKVTKQA-------FTSHNTTTSVSCVRNV 387
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 352 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 411
Q Q+ L+SF +S+ + +T + +N+ T S V H +
Sbjct: 349 QKKQMDLESFVMSKSH------SKVTKQAFTSHNTTTSVSC----VRNVHSKEKRPAFRQ 398
Query: 412 YSCSVHELHGVNSSVCSHDQD-------EKKGKRFLDKERNNVALLEWRRIQQLMETSIP 464
+ E + +S C +DQ E ++ D + + WR + + P
Sbjct: 399 TKITFREYIPIETSTCIYDQSSSIENTTETLQRKIYDPSKTAQSTEAWRSLFSGPKKP-P 457
Query: 465 LCKGHKEPCVARVVKK----PGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
+C GHKEPCV R VKK G GRRF+VCAR +G + N A C F W
Sbjct: 458 VCLGHKEPCVMRTVKKLKTTKGSRLGRRFWVCARPQGASDNQAARCSTFFW 508
>gi|451997504|gb|EMD89969.1| hypothetical protein COCHEDRAFT_1178143 [Cochliobolus
heterostrophus C5]
Length = 632
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/562 (21%), Positives = 200/562 (35%), Gaps = 139/562 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGRC++ + F+LF VY P + + +R F++ F L+ R L G+++ +
Sbjct: 138 LDLEGRCLVLEFPAFVLFGVYSPA--NSNGLRDGFRIGFLIALETRIRNLTKMGKKVILT 195
Query: 75 GDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSF 113
GDLN++ ID A ++ R F +L+
Sbjct: 196 GDLNVSRDLIDTARAEEHIRTEGMTHDEYLNTPNRRIFNQLLLNGKVPGQRDEGREEPVL 255
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R +T W A N+G+RID ILC+
Sbjct: 256 YDLCREFHPDREGMFTHWEQKINARPSNFGSRIDFILCS--------------------- 294
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VPEI-------------- 218
I K W + L GSDH PVY L + VP +
Sbjct: 295 -----ITIKDW------FQDANIQEGLMGSDHCPVYAVLKDKVPVLRTSGSDSVEEEVHI 343
Query: 219 --------------------PQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGK 255
P P+L+ + L R ++ + +
Sbjct: 344 LDLMNPAGMFKDGVRQRDYDPAKDIPALSGKLLSEFTKRRNIRDMFSKKPAPPKPNPKPT 403
Query: 256 SCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIEN 315
+ A++ E +DR L ++ + + + + K+ E
Sbjct: 404 PAVARPDVTAKAEVASTASTVEEQMDRDLALAIEASKADMLANTENKLTNSQSPLKSAEK 463
Query: 316 CRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF--HKRSNVSHDDN 373
R SA+ + I +G ++ K GQ SLK FF H + S + N
Sbjct: 464 RRASASASPGKPIKRGKPGALA---------VPTKGNKGQQSLKGFFQTHSKPADSVEPN 514
Query: 374 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 433
+++ S + TDT+ SQ +H S +++ S D D
Sbjct: 515 DAVPSMS---SFEATDTA-SQNATDMAHPSSPS----------------STANKSFDSDP 554
Query: 434 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 493
+ + + R W ++ + + P C+ H E C+ R KKPG GR+F++C
Sbjct: 555 RASQ---ETSREG-----WTKL--FSKKAAPRCE-HGEHCITRTTKKPGVNCGRQFWICP 603
Query: 494 RAEGPASNPEAN----CGYFKW 511
R GP+ + E CG F W
Sbjct: 604 RPIGPSGHKEVGTQWRCGTFIW 625
>gi|213405473|ref|XP_002173508.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
gi|212001555|gb|EEB07215.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
Length = 554
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFV 73
IDSEGRC++ D F+L VY P E R++F+ F++ L+ R L + +R + +
Sbjct: 131 IDSEGRCILLDFQLFVLIGVYCPVNSGEK--RLKFRRLFYNALRDRIIRLTQEAKRNVIL 188
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF-------RIWFRSML-VESGGSFFDVFRSKHPERR 125
+GD+NI +D D D K +F R W R ML G D R +HP RR
Sbjct: 189 LGDINILRDELDTAD-NKDIQKEQFDESIRESREWVRGMLQPHPEGLLIDTTRHRHPVRR 247
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 182
+TCW + N+GTRID+I C P L +Q N + + C + +D+K
Sbjct: 248 GMFTCWNTRLNTRPTNFGTRIDYI-CISPALLPW--MQDANIMPEIMGSDHCPVFLDFK 303
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 337 SPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 396
+P ++ KK+K L + LK+ + D N++ TS + +QEE
Sbjct: 380 TPQTTEKVTKKSKNQTLLSMFLKTPKEASARKDSSDKNALLRTS---------SEHTQEE 430
Query: 397 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS---HDQDEKKGKRFLDKERNNVALLEWR 453
V + + E + V+ S S + ++E+ L +N +L +R
Sbjct: 431 VSTENFQDEE-----------ESYAVSQSTFSSSTYTENEQVKCSTLSSNVDNESLRLFR 479
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR-----AEGPASNPEAN--- 505
+ + +PLC GH EPC VKKPG +GR+F+ C+R E ++ E N
Sbjct: 480 K--AFSKPRVPLCTGHMEPCKKLDVKKPGVNYGRKFWCCSRPVGEVVENSSATNEKNPYQ 537
Query: 506 CGYFKW 511
C +F W
Sbjct: 538 CRFFLW 543
>gi|326368806|gb|ADZ55472.1| DNA lyase [Sclerotinia homoeocarpa]
Length = 654
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 93/223 (41%), Gaps = 63/223 (28%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R +F+L F + L R L+ +G+R+F+
Sbjct: 148 LDSEGRCVILEFPAFVLIGVYCPA--NRDESRDEFRLGFLNALDTRVRNLVAEGKRVFLA 205
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS------------ 112
GDLNI ID +A K R F ++V GG
Sbjct: 206 GDLNIIRDEIDTANAEEQLKKQGITVEQYVSTPARRLFNHLVV--GGRVVGERDEGRETE 263
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+D+ R HPER+ +TCW + N+G+RID++LC+
Sbjct: 264 IMWDLCRGFHPERKGMFTCWDTKLNTRPGNFGSRIDYVLCS------------------- 304
Query: 172 VNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL 212
K WK W + L GSDH PVY L
Sbjct: 305 ----------KEWKD-----WFQDANIQEGLMGSDHCPVYATL 332
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 421 GVNSSVCSHDQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVA 475
G N++ S+D+ +F+ E+ +V A W ++ L + P C+ H +PC++
Sbjct: 549 GGNTTTSSNDEASAMNAKFVLDEQKDVIDPIVAKESWSKL--LKKRVAPKCE-HNDPCIS 605
Query: 476 RVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
V KK G GR F++CAR GP+ E N CG F W+
Sbjct: 606 HVTKKQGINCGRSFYMCARPLGPSGQQEKNTEWRCGTFIWS 646
>gi|149031346|gb|EDL86344.1| rCG38932, isoform CRA_b [Rattus norvegicus]
Length = 346
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVE 108
++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSN 60
Query: 109 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 61 PGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL----------- 109
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRSLVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPAK 148
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKRE 249
P+L +R+LP G Q ++ L+ E
Sbjct: 149 QCPALCTRFLPEFAGTQLKILRFLVPLE 176
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 397
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 203 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 260
Query: 398 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 457
NK+P +DEK+ V W+ +
Sbjct: 261 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 289
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 290 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 343
>gi|385145223|emb|CCD57806.1| putative DNA lyase apn2 protein [Neurospora terricola]
Length = 589
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/532 (22%), Positives = 191/532 (35%), Gaps = 108/532 (20%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+
Sbjct: 102 DEAL-LDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVAMGK 158
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG---------- 110
+F+ GDLNI +D K + F + +V G
Sbjct: 159 EVFLCGDLNIIRNEMDTAGLPERLKKEAMTLDDFISTPSRRFLNQVVFGGRVLGEPDEGR 218
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R YTCW + A N+G+RID++LC FV
Sbjct: 219 EKPVLWDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFV 270
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 228
++ E L GSDH PVY +G+ T S
Sbjct: 271 DANIQEG------------------------LLGSDHCPVYATIGD--------TVSKDG 298
Query: 229 RYLPIIRGVQQTLVSVLMKREVAKQGKSC------------------------KFSGSLP 264
+PI + + +R+ K C K + P
Sbjct: 299 TTIPITDIMNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSTTP 358
Query: 265 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 324
++ D +D S+ + S LQ S+ + + + E +
Sbjct: 359 KSASPAADGQDTSDPTNTSYTTAHAIAALQEAASSAPSPKQPLSQSTPTEPALSQTSPLP 418
Query: 325 HSTITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSIT 377
Q +S+ P V A K S++G Q +L FF ++ V+ D+
Sbjct: 419 KRRAEQPASSIRPPKKVKAAFTKQPSSKIGPGPSQSTLMGFFKPKTPTPTVNPDERPGPL 478
Query: 378 DTSLNVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQ 431
+ S + ++ +T+ E P+ ++ I D + V S
Sbjct: 479 NGSNHYTAAIAETTTRNEPSPAKGSQPKRSFEADDIEEWDEDAVESKTSPVTYKATSAAM 538
Query: 432 DEK-KGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 482
+E+ KGK D +N + W ++ L + +P C+ H + C + V KKPG
Sbjct: 539 EEEGKGKTIFDPIQNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPG 584
>gi|156056543|ref|XP_001594195.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980]
gi|154701788|gb|EDO01527.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 27/163 (16%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ +DSEGRCVI + FIL VY P + D R +F+L F + L R L+ G+ +
Sbjct: 109 MTLDSEGRCVILEFPAFILIGVYCPA--NRDETRDEFRLAFLNALDTRIRNLVALGKSVL 166
Query: 73 VVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGGS---------- 112
+VGDLN+ ID + K NE+ R F +L+ GG
Sbjct: 167 LVGDLNVIGDEIDTANLEEQLKKQKLTLNEYISTPARRLFNHLLI--GGKVVGERDEGRE 224
Query: 113 ---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+DV R HP R++ +TCW A N+G+RID+ILC+
Sbjct: 225 PQVMWDVCRGFHPARKKMFTCWEQKKNARPGNFGSRIDYILCS 267
>gi|226294616|gb|EEH50036.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb18]
Length = 621
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
S + +DSEGRCVI + F+L VY P + D +R F+ F + + R L+
Sbjct: 129 LSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAVDARVRNLVG 186
Query: 67 QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS---- 112
G+R+ + GDLNI+ + ID A +F R F ++ SGG
Sbjct: 187 MGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQLV--SGGKVIGD 244
Query: 113 ---------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
D+ R HP+RR YTCW A NYG+RID++LC+
Sbjct: 245 RDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVLCS 293
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 354 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV-TDY 412
GQ SLK FF + + S D+ + S V++ V V + K P+ Y
Sbjct: 456 GQKSLKGFFGLKGSGSTADDQT---NSPKVSDPVA--------VGNEQQEAAKSPLDITY 504
Query: 413 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL--------EWRRIQQLMETSIP 464
SC + G Q E + N+ ++ W RI + P
Sbjct: 505 SCPPGDGCGPEDDETQGQQQEAAEPLANGGDSNDDCIVHDPIANKESWSRI--FTKKPAP 562
Query: 465 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 512
C GH EPC++ V KK G GR F++CAR GP+ + + C F W+
Sbjct: 563 RCSGHHEPCISLVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 614
>gi|19112314|ref|NP_595522.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe 972h-]
gi|48427993|sp|P87175.1|APN2_SCHPO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|2117306|emb|CAB09119.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe]
gi|40287246|gb|AAR83752.1| AP-endonuclease-like protein [Schizosaccharomyces pombe]
Length = 523
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 42/208 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFV 73
IDSEGRC++ D FIL VY P E+ R++++ F+ L++R E L+ +G R+I +
Sbjct: 131 IDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRERIERLIKEGNRKIIL 188
Query: 74 VGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFF-DVFRSKHPERRE 126
VGD+NI ID D ++ E R W R +L+ S D+ R +HP R+
Sbjct: 189 VGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKG 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
+TCW + NYGTRID+ L L V + DI+ +
Sbjct: 249 MFTCWNTRLNTRPTNYGTRIDYTLATPDLLP-------------WVQDADIMAE------ 289
Query: 187 GNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ GSDH PVY+ L E
Sbjct: 290 -------------VMGSDHCPVYLDLKE 304
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 497
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>gi|164429579|ref|XP_964325.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
gi|157073536|gb|EAA35089.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
Length = 630
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 122/551 (22%), Positives = 203/551 (36%), Gaps = 151/551 (27%)
Query: 46 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----- 100
RI+F+ F + R L+ G+ +F+ GDLNI +D K +
Sbjct: 140 RIEFRQAFIDAMDARVRNLVSLGKEVFLCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFIS 199
Query: 101 ----WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 144
F + +V G +D+ R HP+R YTCW + A N+G+
Sbjct: 200 TPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPKRPGMYTCWETRKNARPGNFGS 259
Query: 145 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 204
RID++LC+ FV ++ E L GSD
Sbjct: 260 RIDYVLCSSGIKDW--------FVDANIQEG------------------------LLGSD 287
Query: 205 HAPVYMCLGE--------VP------------------EIPQHSTPSLASRYLPIIRGVQ 238
H PVY + + +P E Q ++R +P +
Sbjct: 288 HCPVYATISDSVRRDGVIIPITDIMNPEGMFKNGQRQREWSQKDCLPTSARLIPEF-DRR 346
Query: 239 QTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYC 298
Q++ + +K+ K + P + D++D S++ + S + +LQG
Sbjct: 347 QSIKDMFVKK---------KTPSNTPKSATPAADSQDISDSPNTSSITVNATTVLQGTAS 397
Query: 299 SSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK--------- 349
S+S+ S ST T + + SP RA + A
Sbjct: 398 SASSPR----------------QWLSQSTATDPALSQTSPVPKRRAEQPAPYTRPPKKAK 441
Query: 350 -------KSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDTSLSQE 395
S+ G Q +L F ++ V+ D+ + + + + + +T+L E
Sbjct: 442 AALAKQPSSKTGPGPSQSTLMGFIKAKTPTPTVNPDERHGPINGNNHSPVTAAETALRNE 501
Query: 396 EV------PESHHHSNKIPVTDYSCSVHEL----HGVNSSVCSHDQDEKKGKRFLDKERN 445
P+ + + D + H+ +G NS+ +DE KGK D +N
Sbjct: 502 PFTAKGSQPKQAFEAGNVEEWDGNAVEHKTNSTTYGENSTAM---EDEGKGKTIFDPIQN 558
Query: 446 NVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN 505
V+ W ++ L + +P C+ H E C + V KKPG GR F++CAR GP+ N E
Sbjct: 559 KVS---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCARPLGPSGNKETG 612
Query: 506 ----CGYFKWA 512
C F W+
Sbjct: 613 TEFRCKTFIWS 623
>gi|307109978|gb|EFN58215.1| hypothetical protein CHLNCDRAFT_142087 [Chlorella variabilis]
Length = 483
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 22 VITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIA 80
+ITDHG F+L NVY P A D D R+ +KL+F L+++ E L GR + +VGD N+
Sbjct: 108 LITDHGAFVLVNVYVPNAGDRPDRPRLHYKLRFLAALRRKCEELAVAGRELLLVGDFNVP 167
Query: 81 PAAID-RCDAGPDFAKNE-FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE 138
A D D P + +E + R+ L ++ DV+R HP+ Y+ W T A
Sbjct: 168 AEARDVHPDLLPGGSLDELYGQEERAALHALTAAYPDVWRRLHPQEAATYSVWNEKTSAR 227
Query: 139 QFNYGTRIDHILC 151
FN G RID++LC
Sbjct: 228 AFNRGLRIDYVLC 240
>gi|347840170|emb|CCD54742.1| similar to DNA lyase [Botryotinia fuckeliana]
Length = 651
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L+D+ D +DSEGRCVI + FIL VY P + D R +F++ F + L R
Sbjct: 137 LQDYFLDAA-TLDSEGRCVILEFPAFILIGVYCPA--TRDETRDEFRIGFLNALDTRVRN 193
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS- 112
L+ G+ +F+ GDLNI ID +A K R F +LV GG
Sbjct: 194 LVALGKSVFLTGDLNIIREEIDTANAEEKLKKEGLTVEQYISTPARRLFNHLLV--GGKV 251
Query: 113 ------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HP R+ +TCW A N+G+RID++LC+
Sbjct: 252 IGDRDEGKEPQVMWDICRGFHPTRKGMFTCWDQKMNARPGNFGSRIDYVLCS 303
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 433 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
EK K DKE ++ VA W +L+ IP HKEPC++ + KK G GR F+
Sbjct: 561 EKTCKSRQDKEVHDPIVAKESW---SKLLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 617
Query: 491 VCARAEGPASNPEAN----CGYFKWA 512
+C R GP+ E N C F W+
Sbjct: 618 MCPRPLGPSGQQEKNTEWRCNTFIWS 643
>gi|124441686|gb|ABN11482.1| DNA lyase [Ascosphaera apis]
Length = 533
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 24/160 (15%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P +E +R F+L F V + R L+ G+RI V
Sbjct: 87 LDSEGRCVILEFQAFVLIGVYLPAVRNE--LRDDFRLGFLRVFECRVRNLIALGKRIIVA 144
Query: 75 GDLNIAPAAIDRCDA-----GPDFAKNEF-----RIWFRSMLVESGG------------S 112
GDLNI+ D A G ++ ++ R F ++ +S
Sbjct: 145 GDLNISRDVQDSASALADVLGERLSREQYISTPSRALFNELVTDSSDYDSSEPNNNAQCV 204
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HP R+ +TCW T A N+G+RID+ILC+
Sbjct: 205 LWDICRDFHPSRKGMFTCWDMKTNARPGNFGSRIDYILCS 244
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 436 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 495
G+++ +++ + W I P C+GH EPC++ V KK G GR F++C R
Sbjct: 441 GEKYDRYSKDDDTIKAWANI--FTPQQAPSCEGHGEPCISLVTKKAGLNQGRSFWMCPRP 498
Query: 496 EGPASNPEAN----CGYFKW 511
GP+ + E C F W
Sbjct: 499 LGPSGSAEKGTQWRCATFIW 518
>gi|409081894|gb|EKM82253.1| hypothetical protein AGABI1DRAFT_70906 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 641
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 93/234 (39%), Gaps = 70/234 (29%)
Query: 15 IDSEGRCVITDHGHFILFNVY---------GPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
+D EGR ++ D G F+L N Y P A S R ++K Q+ +L R E L+
Sbjct: 142 LDGEGRTLVIDFGLFVLINTYCPNDSSTPATPAAPSPTMSRDKYKKQYHRLLSSRVESLI 201
Query: 66 -CQGRRIFVVGDLNIAPAAIDRCDAGPDFAK---------------------NEFRIWFR 103
+ R++ V+GD+N A ID C+ ++ E R W
Sbjct: 202 KNENRQVIVLGDINACAAVIDHCEGDIMVSRARKANNLEKGDESGFWDCEGTGEGRRWLS 261
Query: 104 SMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
L +GG D+ R PER+ YTCW + A + NYGTRID+IL
Sbjct: 262 DWLQRHDGAGGPMVDIVRRFWPERKGMYTCWNTKLSARETNYGTRIDYILVT-------- 313
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL 212
PG P W + ++GSDH PVY+ L
Sbjct: 314 -------------------------PGLIP-WIEAANIQPEIKGSDHCPVYIDL 341
>gi|426197032|gb|EKV46960.1| hypothetical protein AGABI2DRAFT_179106 [Agaricus bisporus var.
bisporus H97]
Length = 776
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 97/244 (39%), Gaps = 71/244 (29%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVY---------GPRADSEDTVRIQFKLQFFH 55
ED D L +D EGR ++ D G F+L N Y P A S R ++K Q+
Sbjct: 163 EDGEVDYQL-LDGEGRALVIDFGLFVLINTYCPNDSSTPTTPAAPSPTMSRDKYKKQYHR 221
Query: 56 VLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPDFAK------------------- 95
+L R E L+ + R++ V+GD+N A ID C+ ++
Sbjct: 222 LLSSRVESLIKNENRQVIVLGDINACAAVIDHCEGDIMVSRARKANNLEKGDESGFWDCE 281
Query: 96 --NEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
E R W L +GG D+ R PER+ YTCW + A + NYGTRID+IL
Sbjct: 282 GTGEGRRWLSDWLQRHDGTGGPMVDIVRRFWPERKGMYTCWNTKLSARETNYGTRIDYIL 341
Query: 151 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPV 208
PG P W + ++GSDH PV
Sbjct: 342 VT---------------------------------PGLIP-WIEAANIQPEIKGSDHCPV 367
Query: 209 YMCL 212
Y+ L
Sbjct: 368 YIDL 371
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 511
P C H EP V K G G++F++CAR GP +P+ C +FKW
Sbjct: 696 PKCVAHGEPAKEYTVNKQGANKGKKFWICARPVGPGYDKGRTERLREEVDPQYRCNFFKW 755
Query: 512 AFSKSKQ 518
+ KQ
Sbjct: 756 STDWWKQ 762
>gi|402536547|gb|AFQ62784.1| APN2, partial [Hymenoscyphus albidus]
gi|402536555|gb|AFQ62789.1| APN2, partial [Hymenoscyphus albidus]
Length = 488
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 56/236 (23%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L +FS D +DSEGRCVI + +L VY P + D R +F++ F L R
Sbjct: 1 LSNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLDALDARVRN 57
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------ 107
L+ G+R+F+ GDLNI +D G ++ +LV
Sbjct: 58 LVAMGKRVFLTGDLNIIREKMDTAYGDEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIG 117
Query: 108 -----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C +
Sbjct: 118 QKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNW---- 173
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
F ++ E L GSDH PVY L E EI
Sbjct: 174 ----FRESNIQEG------------------------LMGSDHCPVYAILKEKVEI 201
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 419 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 475
Query: 508 YFKWA 512
F W+
Sbjct: 476 TFIWS 480
>gi|302761410|ref|XP_002964127.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
gi|300167856|gb|EFJ34460.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
Length = 388
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQ------KHDLQS-HNFVTCHVNECDILIDYKRWK 185
S +GAE+FNYG+RIDH+ AGPC HD S F C + CDIL+ +KR K
Sbjct: 101 SASGAEEFNYGSRIDHVRIAGPCAGHCQCPDGSHDNSSCDGFAECGTDMCDILLKFKRAK 160
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP-SLASRYLPIIRGVQQTLVSV 244
PRW GG S +L+GS HAPV + L +P + H+ P L + + + + ++
Sbjct: 161 LDTLPRWSGGRSLKLDGSVHAPVILQLKHLPSMKLHNWPLDLCLSFAVVSKVLLISIFRK 220
Query: 245 LMKREVAKQGKSCKFSGSLPAESNSTG 271
L +R A + S PA + TG
Sbjct: 221 LNERATANTEPDTSRNVSKPAFTQETG 247
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 452 WRRIQQLMETS---IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 496
R QQ +E S +PLCKGH EPCV R VKK GP GR F+VC RA+
Sbjct: 324 MRSSQQSLEKSAADLPLCKGHSEPCVVRTVKKAGPKLGRGFYVCDRAK 371
>gi|402695438|gb|AFQ90567.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695442|gb|AFQ90570.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 456
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 56/236 (23%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L +FS D +DSEGRCVI + +L VY P + D R +F++ F + L R
Sbjct: 53 LSNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLNALDARVRN 109
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------ 107
L+ G+R+F+ GDLNI +D G ++ +LV
Sbjct: 110 LVAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIG 169
Query: 108 -----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C + D
Sbjct: 170 QKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNWFRD- 228
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
+ L GSDH PVY E EI
Sbjct: 229 -------------------------------SNIQEGLMGSDHCPVYAVFKEKVEI 253
>gi|402695428|gb|AFQ90560.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695431|gb|AFQ90562.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 511
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 56/236 (23%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L +FS D +DSEGRCVI + +L VY P + D R +F++ F + L R
Sbjct: 24 LSNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLNALDARVRN 80
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------ 107
L+ G+R+F+ GDLNI +D G ++ +LV
Sbjct: 81 LVAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIG 140
Query: 108 -----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C + D
Sbjct: 141 QKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNWFRD- 199
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
+ L GSDH PVY E EI
Sbjct: 200 -------------------------------SNIQEGLMGSDHCPVYAVFKEKVEI 224
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 442 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 498
Query: 508 YFKWA 512
F W+
Sbjct: 499 TFIWS 503
>gi|432091224|gb|ELK24429.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 607
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 18/146 (12%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKLQFF 54
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK++F+
Sbjct: 113 MDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKMRFY 172
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---S 109
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 173 RLLQIRAEALLPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKLDCQ 232
Query: 110 GGS----FFDVFRSKHPERREAYTCW 131
GGS F D +R HP++ A+TCW
Sbjct: 233 GGSQVGAFIDAYRCFHPKQERAFTCW 258
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 41/191 (21%)
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---SGGS----FFD 115
L G + ++GDLN A ID DA F ++ R W +L + GGS F D
Sbjct: 278 LPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKLDCQGGSQVGAFID 337
Query: 116 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 175
+R HP++ A+TCW + TGA + NYG+RID++ L VT +
Sbjct: 338 AYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------LGDRTLVTDTFQDS 385
Query: 176 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 235
+L + + GSDH PV L V +P P L +R+LP
Sbjct: 386 FLLPE-------------------VMGSDHCPVGAVL-NVSSVPAKQCPPLCTRFLPEFS 425
Query: 236 GVQQTLVSVLM 246
G Q ++ L+
Sbjct: 426 GTQLKILHFLV 436
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH EPCV R VKK GP G F+VC+R GP+++P + C +F W+
Sbjct: 555 MPLCGGHGEPCVMRTVKKAGPNQGHHFYVCSRPRGPSTDPSSRCNFFLWS 604
>gi|46129427|ref|XP_389065.1| hypothetical protein FG08889.1 [Gibberella zeae PH-1]
Length = 609
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 119/510 (23%), Positives = 184/510 (36%), Gaps = 94/510 (18%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R F+L F L R L+ G+++ +
Sbjct: 137 LDSEGRCVILEFPGFVLLGVYSPA--NRDETRDDFRLGFLQALDVRIRNLVAAGKQVVLT 194
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSF 113
GDLNI + +D + K F + W F ++ E
Sbjct: 195 GDLNIVRSEVDSTNVSETLRKGNFDLNEWMNIPARRIFNQLIFEGSVLGERDQGRKAPVL 254
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HPER TCW + N G+RID++LC+ D F ++
Sbjct: 255 WDLCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNFSNIQ 306
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-------GEVPEIPQHSTPSL 226
E L GSDH PV+ GE +P+ P
Sbjct: 307 EG------------------------LMGSDHCPVFAIFSDKVIVRGEERALPEMMNPPG 342
Query: 227 ------------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 274
A LP+ + + +R + S + P E + G
Sbjct: 343 MFHGERRLRDWNAKDLLPL---SAKLIPEFDRRRSIRDMFTKKAASAAPPQEPANPGAAT 399
Query: 275 DCSENVDRSLNNYCD-SGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSS 333
S N D + + SG G S+ + GE + + N ++T +S
Sbjct: 400 KSSMNGDSNSEGIKEKSGGASGPETSAISIPKLGETLGSTKQSVSPLNAKRPGSVTDTTS 459
Query: 334 NHISPFHVDRARKKAK-KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSL 392
+ K K K GQ +L+ FF ++ + D S V S T +
Sbjct: 460 RPLKKTKSLVGAKDLKSKVAPGQRTLQGFFKPKAPAAQDGK------SERVAASSTPSPT 513
Query: 393 SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEW 452
+ V S + P T + + E + S ++ D G+ F E A W
Sbjct: 514 KKPTVATRGAASPQQPNTPEAM-LTERSPLRISQRRNEPDS-SGRVFDPIE----AKESW 567
Query: 453 RRIQQLMETSIPLCKGHKEPCVARVVKKPG 482
++ L + P C+ H EPC++ KKPG
Sbjct: 568 SKL--LGKRVAPRCE-HDEPCISLTTKKPG 594
>gi|425906911|gb|AFY11135.1| DNA lyase [Penicillium roqueforti]
Length = 658
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P E+ R F++ F +VL R L+ G+ + V
Sbjct: 159 LDSEGRCVILEFPAFVLIGVYCPAYRDEN--RDTFRMDFLNVLDSRIRNLIAMGKNVVVA 216
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVES-----------GGSF 113
GD+NI+ ID +F R F ++ +
Sbjct: 217 GDINISKQGIDAAHGIEAIRKGTMTEEEFISAPSRRLFNHLISDGVVIGERDKGREDPVL 276
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
FDV RS HP R YTCW A NYG+RID++LC+
Sbjct: 277 FDVCRSFHPGRAGMYTCWDQKLNARPGNYGSRIDYVLCS 315
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 351 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 410
S GQ L FF R+ +S T + + ++ S T SL+ E +S ++
Sbjct: 489 SAAGQKMLTGFFKPRAVISE-----TTQSPIPLSGSST-PSLNPEPSGQSQEKGKYPEIS 542
Query: 411 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKG 468
S + E + S + ++F+D + V+ +W ++ + +P C G
Sbjct: 543 LQSPGLQEESIREEADISTEG--PTARKFIDDTIIDPIVSKEDWSKL--FTKKPVPPCDG 598
Query: 469 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
H+EPC+ KKPG GR F++C R GP+ E C F WA
Sbjct: 599 HQEPCIRLTTKKPGMNRGRSFWICPRPLGPSGEKEKGTQWRCPTFIWA 646
>gi|430813001|emb|CCJ29604.1| unnamed protein product [Pneumocystis jirovecii]
Length = 545
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G S L++D EGR ++ D F+LF VY P + D R +F+ + L R
Sbjct: 118 GYTKISNQHALELDQEGRSIVLDLNLFVLFGVYCPL--NSDPERSKFRRAWMETLDHRIR 175
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------EFRIWFRSMLV-ESGGSF 113
L GR I ++GD+N + AID A +F +N + R W +L+ G
Sbjct: 176 NLKKMGRNIIIMGDINASRDAIDTSYALEEFQENNTNGLEDLDQRAWLNKILLPHPEGFM 235
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150
D+ R HP R+ +TCW + A N+GTRID+IL
Sbjct: 236 IDLCRHFHPNRKGMFTCWNAKINARPCNFGTRIDYIL 272
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
S PLC H++PC+ KKPG F R F++C++
Sbjct: 455 SPPLCNVHQKPCIELQSKKPGINFKRYFWICSK 487
>gi|239613861|gb|EEQ90848.1| DNA lyase Apn2 [Ajellomyces dermatitidis ER-3]
Length = 633
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F ++L R L+ G+R+ V+
Sbjct: 133 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILDARVRNLVAMGKRVIVM 190
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI + ID A +F R F ++ GG
Sbjct: 191 GDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY--GGKVIGDRDQGRETP 248
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
D+ R HP+R YTCW A NYG+RID++LC
Sbjct: 249 ILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 288
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 348 AKKSQLGQLSLKSFFHKR-----SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 402
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 459 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 508
Query: 403 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 453
N P + +SC + G + S++ D R D N + W
Sbjct: 509 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 565
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 509
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 566 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 623
Query: 510 KWA 512
W+
Sbjct: 624 IWS 626
>gi|452836974|gb|EME38917.1| hypothetical protein DOTSEDRAFT_180911 [Dothistroma septosporum
NZE10]
Length = 661
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D+EGRCV+ + F+LF VY P A+S R F+ F + L R L+ +G+ + +V
Sbjct: 134 LDAEGRCVVVEFTAFVLFGVYSP-ANSMGN-RDDFRFGFINALDCRIRNLVKEGKNVVLV 191
Query: 75 GDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSMLVES-----------GGSF 113
GDLN++ ID D K E+ R F MLV+ G
Sbjct: 192 GDLNVSRHEIDSAPTLEDIRKGLGTREEYLMSPNRRIFNQMLVDGEVLDERDVGREKGVL 251
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D R HP+R+ YTCW + T A NYG RID +L +
Sbjct: 252 WDTSRLFHPDRKGMYTCWETKTNARPGNYGARIDFVLVS 290
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
PLC+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 574 PLCEGHSEPCKSMQTKKKGSNQGRSFWMCARPLGPSGEKEKGTQWRCGTFIW 625
>gi|385145207|emb|CCD57793.1| putative DNA lyase apn2 protein [Neurospora pannonica]
Length = 643
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 132/599 (22%), Positives = 214/599 (35%), Gaps = 163/599 (27%)
Query: 7 FSKD-ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
FS D + ++DSEGRCVI + F+L VY P + D R +F+ F + R L+
Sbjct: 97 FSSDIDEAQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLV 154
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG---- 110
G+ +F+ GDLNI +D AG P+ K E F + +V G
Sbjct: 155 AMGKEVFLCGDLNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIG 212
Query: 111 --------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
+D+ R HP R YTCW + A N+G+RID++LC
Sbjct: 213 EPDEGRENPVLWDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI------- 265
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-------- 214
FV ++ E L GSDH PVY +G+
Sbjct: 266 -KDWFVDANIQEG------------------------LLGSDHCPVYATIGDSVNKDGAT 300
Query: 215 VP------------------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 256
+P E Q +++ +P +Q++ + KR
Sbjct: 301 IPITDIMNPEGMFKDGQRQREWSQKDCLPTSAKLIPEF-DRRQSIKDMFFKR-------- 351
Query: 257 CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC 316
K + ++ + D +D S+ + S + LQ S+ + +
Sbjct: 352 -KTTSTITKSAAPAADGQDTSDPTNISSATVNATAALQEAASSAPSPKQS---------- 400
Query: 317 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 376
S ST T+ + + SP RA + A + + +K+ K+ + S
Sbjct: 401 ------LSQSTTTEPALSQTSPVPKRRAEQPASSIRPSK-KVKAALTKQPSSKTGPGPSQ 453
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
+ +L+ EE P S + +N P T + S Q ++
Sbjct: 454 STLMGFFKPKTPTPTLNPEERPASTNGNNHSPAT----IAETITRAEPSPAKGSQPKRPF 509
Query: 437 KRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPG------------- 482
+ +E ++ A E W ++ L + +P C+ H E C + V KKPG
Sbjct: 510 QTDDIEEWDDDANKESWSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGMLLLLFFSF 566
Query: 483 -------PT------------------FGRRFFVCARAEGPASNPEAN----CGYFKWA 512
P+ GR F++CAR GP+ + E C F W+
Sbjct: 567 LLSDALRPSPPSTTPDDLKLTLDSRLVTGRSFYMCARPLGPSGDKETGTEFRCKTFIWS 625
>gi|327349957|gb|EGE78814.1| DNA lyase Apn2 [Ajellomyces dermatitidis ATCC 18188]
Length = 642
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F ++L R L+ G+R+ V+
Sbjct: 142 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILDARVRNLVAMGKRVIVM 199
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI + ID A +F R F ++ GG
Sbjct: 200 GDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY--GGKVIGDRDQGRETP 257
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
D+ R HP+R YTCW A NYG+RID++LC
Sbjct: 258 ILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 297
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 348 AKKSQLGQLSLKSFFHKR-----SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 402
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 468 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 517
Query: 403 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 453
N P + +SC + G + S++ D R D N + W
Sbjct: 518 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 574
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 509
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 575 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 632
Query: 510 KWA 512
W+
Sbjct: 633 IWS 635
>gi|302820744|ref|XP_002992038.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
gi|300140160|gb|EFJ06887.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
Length = 654
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 61/125 (48%), Gaps = 36/125 (28%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+E F++ ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL+ VLQ
Sbjct: 427 VEGFTRQELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLK---VLQ----- 478
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
N R W S+LV GG+F D FR HPE
Sbjct: 479 ----------------------------HVHFNMSRQWLTSLLVSEGGAFSDAFRVFHPE 510
Query: 124 RREAY 128
R EAY
Sbjct: 511 RAEAY 515
>gi|194376980|dbj|BAG63051.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 108
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRTEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 109 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKRE 249
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|414144888|ref|NP_001258677.1| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2 [Homo
sapiens]
gi|119613616|gb|EAW93210.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_c
[Homo sapiens]
gi|221045760|dbj|BAH14557.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 108
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 109 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKRE 249
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|261193611|ref|XP_002623211.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
gi|239588816|gb|EEQ71459.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
Length = 629
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 27/160 (16%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F ++L R L+ G+R+ V
Sbjct: 129 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILDARVRNLVAMGKRVIVT 186
Query: 75 GDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS------------ 112
GDLNI + ID A +F R F ++ GG
Sbjct: 187 GDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY--GGKVIGDRDQGRETP 244
Query: 113 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
D+ R HP+R YTCW A NYG+RID++LC
Sbjct: 245 ILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 284
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 348 AKKSQLGQLSLKSFFHKR-----SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 402
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 455 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 504
Query: 403 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 453
N P + +SC + G + S++ D R D N + W
Sbjct: 505 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 561
Query: 454 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 509
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 562 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 619
Query: 510 KWA 512
W+
Sbjct: 620 IWS 622
>gi|426396096|ref|XP_004064291.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 3
[Gorilla gorilla gorilla]
Length = 347
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 108
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSS 60
Query: 109 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 222 STPSLASRYLPIIRGVQQTLVSVLMKRE 249
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|62085846|gb|AAX63314.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 93/226 (41%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|165874703|gb|ABY68234.1| DNA lyase [Beauveria bassiana]
Length = 576
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 91/226 (40%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
+ + GDLNI + +D + G K + W +L E
Sbjct: 163 QAILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 GRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISFVTKKPGVNCGRSFYICPR 576
>gi|380487093|emb|CCF38266.1| DNA lyase [Colletotrichum higginsianum]
Length = 621
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 89/222 (40%), Gaps = 55/222 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 118 LDSEGRCVILEFPAFVLIGTYSPA--TRDSSRDSFRLGYLNALDARVRNLVAAGKQVILA 175
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--WFRSM-------LVESG------------GSF 113
GDLN+ ID C+ K + W S LV G
Sbjct: 176 GDLNVTRNEIDTCNVREALRKEGMSVEEWMGSPSRRLFNHLVFDGQVAGHRDEGRETPVL 235
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R++ +TCW + N G+RID+ILC+ F ++
Sbjct: 236 YDLTRVFHPTRQDMFTCWDTKRNMRPANNGSRIDYILCSAGI--------KGWFTDSNIQ 287
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215
E L GSDH PVY LG+
Sbjct: 288 EG------------------------LMGSDHCPVYAVLGDT 305
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSKQ 518
+P C+ H EPC+ KKPG GR F++C R G + E CG F W+ K+
Sbjct: 561 VPRCE-HGEPCIIFQTKKPGVNCGRSFYICPRPLGRSGEKEKGTEWRCGTFIWSSDWKKE 619
Query: 519 K 519
+
Sbjct: 620 Q 620
>gi|346977469|gb|EGY20921.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium dahliae
VdLs.17]
Length = 550
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 55/225 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L Y P + D R +F+L + L R L+ G+++ +
Sbjct: 135 LDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEFRLGYLSALDARVRNLVAAGKQVILT 192
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS-----------F 113
GDLN++ + ID + K + R F +L E
Sbjct: 193 GDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRLFNQLLFEGQVQGDRDPGREQPVL 252
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R+ +TCW + N G RID++LC+ F+ ++
Sbjct: 253 WDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDYLLCSAGI--------KDWFIDSNIQ 304
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 218
E L GSDH PVY LG+ ++
Sbjct: 305 EG------------------------LHGSDHCPVYGTLGDTVKV 325
>gi|255945069|ref|XP_002563302.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588037|emb|CAP86108.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 655
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 87/223 (39%), Gaps = 59/223 (26%)
Query: 15 IDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+DSEGRCVI + F+L VY P R +S DT F++ F + L R L G+ +
Sbjct: 159 LDSEGRCVILEFPAFVLIGVYCPAYRDESRDT----FRMDFLNALDARIRNLTAMGKNVV 214
Query: 73 VVGDLNIAPAAIDRC----------DAGPDFAKNEFRIWFRSMLVES-----------GG 111
V GD+NI+ ID +F R F ++ +
Sbjct: 215 VAGDINISKQGIDAAHGIEAIRKGTTTEEEFISAPPRRLFNHLMSDGVVIGERDKGREDP 274
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
D+ RS HP R YTCW A NYG+RID++LC+ LH + N
Sbjct: 275 VLLDLCRSFHPHRTGMYTCWDQKLNARPGNYGSRIDYVLCS---LHMQDWFSDSN----- 326
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ L GSDH PVY + E
Sbjct: 327 ------------------------IQEGLMGSDHCPVYAVIKE 345
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
V+ +W +I + +P C+GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 577 VSKEDWSKI--FTKKPVPTCEGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 634
Query: 506 ---CGYFKWA 512
C F WA
Sbjct: 635 QWRCPTFIWA 644
>gi|62085804|gb|AAX63293.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 93/226 (41%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF------- 113
++ + GDLNI + +D + K + W + L+ G F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFKGTVFGDRDDDR 222
Query: 114 -----FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085780|gb|AAX63281.1| DNA lyase [Beauveria sp. ARSEF 32]
Length = 579
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 93/226 (41%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF------- 113
++ + GDLNI + +D + K + W + L+ G F
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 114 -----FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085782|gb|AAX63282.1| DNA lyase [Beauveria bassiana]
gi|62085784|gb|AAX63283.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 92/226 (40%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAVGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRGEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|408392228|gb|EKJ71586.1| hypothetical protein FPSE_08225 [Fusarium pseudograminearum CS3096]
Length = 600
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+LF +Y P + D R F+L F L R L+ G+++ +
Sbjct: 136 LDSEGRCVILEFPGFVLFGIYSPA--NRDETRDDFRLGFLQALDVRIRNLVAAGKQVVLT 193
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSF 113
GDLNI + +D + K F + W F ++ E
Sbjct: 194 GDLNIVRSEVDSTNVSETLRKGNFDLSEWMNMPARRIFNQLIFEGSVLGERDQGRQAPVL 253
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HPER TCW + N G+RID++LC+
Sbjct: 254 WDLCRYFHPERAGMNTCWDTKRNTRPANNGSRIDYVLCS 292
>gi|302919090|ref|XP_003052788.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
gi|256733728|gb|EEU47075.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
Length = 653
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+LF VY P + D R F+ FF L R L+ G+++ +
Sbjct: 154 LDSEGRCVILEFPGFVLFGVYSPA--NRDETRDDFRSGFFQALDVRIRNLVADGKQVILT 211
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSF 113
GDLN+ +A+D + K + + W F ++ E
Sbjct: 212 GDLNVVRSAMDSTNVAEMLRKEDISLDDWLNMPVRRIFNQLIFEGKVVGERDEGREEPVL 271
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HPER TCW + N G+RID+ILC+
Sbjct: 272 WDLCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYILCS 310
>gi|425778482|gb|EKV16607.1| DNA lyase Apn2 [Penicillium digitatum PHI26]
gi|425784222|gb|EKV22013.1| DNA lyase Apn2 [Penicillium digitatum Pd1]
Length = 595
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 89/221 (40%), Gaps = 59/221 (26%)
Query: 15 IDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+DSEGRCVI + F+L VY P R +S DT F++ F + L R L G+ +
Sbjct: 95 LDSEGRCVILEFPAFVLIGVYCPAYRDESRDT----FRMDFLNALDSRIRNLTAMGKNVI 150
Query: 73 VVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVES-----------GG 111
V GD+NI+ +ID +F R F ++ +
Sbjct: 151 VAGDINISKQSIDAAHGIEAIRKGTMTEEEFVSAPSRRLFNHLMSDGVVIGERDKGRENP 210
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
FDV RS H +R YTCW NYG+RID++LC+
Sbjct: 211 VLFDVCRSFHLDRTGMYTCWDQKLNTRPGNYGSRIDYVLCS------------------- 251
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
+D + W + + L GSDH PVY+ +
Sbjct: 252 -------LDLRNWFSDS------NIQEGLMGSDHCPVYVVI 279
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 447 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 505
V+ +W ++ + +P C GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 516 VSKEDWSKL--FAKKPVPPCDGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 573
Query: 506 ---CGYFKWA 512
C F WA
Sbjct: 574 QWRCSTFIWA 583
>gi|426256952|ref|XP_004022100.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Ovis aries]
Length = 343
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 41/205 (20%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML-- 106
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSN 60
Query: 107 --VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 61 LGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL----------- 109
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 221
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 222 STPSLASRYLPIIRGVQQTLVSVLM 246
P L + +LP G Q ++ L+
Sbjct: 149 QCPPLCTCFLPEFAGTQLKILRFLV 173
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 289 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 340
>gi|42524876|ref|NP_970256.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|39577087|emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 285
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 88/202 (43%), Gaps = 42/202 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+SEGR +I+DHG F L+N+Y P S D VR FK QF L + L GR++ VVG
Sbjct: 119 ESEGRIIISDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNHHLKEKLATGRQVVVVG 177
Query: 76 DLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D N+A AID R F E R WF S V+ G F D FR P + Y+
Sbjct: 178 DYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSEAKRYSW 233
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W A N G RID+I C L + ++ DIL
Sbjct: 234 WDYRQMARISNRGWRIDYI-CVSKGLEK------------YLASADIL------------ 268
Query: 191 RWKGGMSTRLEGSDHAPVYMCL 212
++EGSDH PV L
Sbjct: 269 -------DQVEGSDHCPVVATL 283
>gi|62085810|gb|AAX63296.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 56/226 (24%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ +
Sbjct: 106 DEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAASK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG--------- 110
++ + GDLNI + +D + K NE+ R +L E
Sbjct: 163 QVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 ERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ E L GSDH PVY + +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|166208515|gb|ABY84902.1| DNA lyase [Beauveria sp. GN-2004a]
Length = 576
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 56/224 (25%)
Query: 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
DE L +DSEGR V+ + F+LF VY P + D RI+F+ F L R L+ G+
Sbjct: 106 DEAL-LDSEGRYVVLEFPSFVLFRVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGK 162
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG--------- 110
++ + GDLNI + +D + G K + W +L E
Sbjct: 163 QVILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDR 222
Query: 111 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+D+ R HP R +TCW + N G+RID+ILC+ D FV
Sbjct: 223 GRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFV 274
Query: 169 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
++ E L GSDH PVY +
Sbjct: 275 DSNIQEG------------------------LMGSDHCPVYATM 294
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPR 576
>gi|302419937|ref|XP_003007799.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
gi|261353450|gb|EEY15878.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
Length = 334
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 55/231 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L Y P + D R +F+L + L R L+ G+++ +
Sbjct: 136 LDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEFRLGYLSALDARVRNLVAAGKQVILT 193
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESG-----------GSF 113
GDLN++ + ID + K + R F +L E
Sbjct: 194 GDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRLFNQLLFEGQVRGDRDPGREQPVL 253
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R+ +TCW + N G RID++LC+ F+ ++
Sbjct: 254 WDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDYLLCSAGI--------KDWFIDSNIQ 305
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP 224
E L GSDH PVY LG+ ++ P
Sbjct: 306 EG------------------------LHGSDHCPVYGTLGDTVKVDGQGCP 332
>gi|426405404|ref|YP_007024375.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862072|gb|AFY03108.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 271
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 17 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 76
SEGR +++DHG F L+N+Y P S D VR FK QF L + L GR+I VVGD
Sbjct: 106 SEGRIIVSDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNVHLKEKLATGRQIVVVGD 164
Query: 77 LNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
N+A AID R F E R WF S V+ G F D FR P + Y+ W
Sbjct: 165 YNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSEAKRYSWW 220
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
A N G RID+I C L + ++ DIL
Sbjct: 221 DYRQMARISNRGWRIDYI-CISKGLEK------------YLASADIL------------- 254
Query: 192 WKGGMSTRLEGSDHAPVYMCL 212
++EGSDH PV L
Sbjct: 255 ------DQVEGSDHCPVVATL 269
>gi|86196713|gb|EAQ71351.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|440468556|gb|ELQ37712.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
Y34]
gi|440481166|gb|ELQ61780.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
P131]
Length = 626
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 87/221 (39%), Gaps = 55/221 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F + R L+ G+++ +
Sbjct: 106 LDSEGRCMILEFPAFVLIGVYSPA--TRDETRTDFRQAFHKAMDARVRNLVAMGKQVVLT 163
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESGGS------------F 113
GDLNI +D K E I F + +V G
Sbjct: 164 GDLNIIRNELDTAGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVM 223
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R YTCW + A N+G+RID++LC+ F+ ++
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQ 275
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
E L GSDH PVY L +
Sbjct: 276 EG------------------------LLGSDHCPVYATLSD 292
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 317 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 376
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
TS+ S T S + + KIP S + G + + + G
Sbjct: 475 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 525
Query: 437 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 481
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 526 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 582
Query: 482 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
G GR F++C R GP+ E CG F W+
Sbjct: 583 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 617
>gi|389646177|ref|XP_003720720.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
gi|351638112|gb|EHA45977.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
Length = 656
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 87/221 (39%), Gaps = 55/221 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F + R L+ G+++ +
Sbjct: 136 LDSEGRCMILEFPAFVLIGVYSPA--TRDETRTDFRQAFHKAMDARVRNLVAMGKQVVLT 193
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESGGS------------F 113
GDLNI +D K E I F + +V G
Sbjct: 194 GDLNIIRNELDTAGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVM 253
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP+R YTCW + A N+G+RID++LC+ F+ ++
Sbjct: 254 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQ 305
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
E L GSDH PVY L +
Sbjct: 306 EG------------------------LLGSDHCPVYATLSD 322
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 317 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 376
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 454 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 504
Query: 377 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 436
TS+ S T S + + KIP S + G + + + G
Sbjct: 505 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 555
Query: 437 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 481
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 556 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 612
Query: 482 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
G GR F++C R GP+ E CG F W+
Sbjct: 613 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 647
>gi|50548171|ref|XP_501555.1| YALI0C07436p [Yarrowia lipolytica]
gi|49647422|emb|CAG81858.1| YALI0C07436p [Yarrowia lipolytica CLIB122]
Length = 582
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 68/231 (29%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L ++DSEGR ++ D G ++F +Y P +E R ++ +F +L++R L+ GR +
Sbjct: 137 LFQVDSEGRSLVLDLGFCVVFGLYCPSTATEGEERDAYRDDYFGLLEERVNLLVEAGREV 196
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF-------------- 117
V+GDLN+A D + K + I ++ + G F +VF
Sbjct: 197 VVMGDLNVARELYDSAEGMQALHKAK-HITLPTLGDKEEGRFVEVFEKLNPGQCKSWREA 255
Query: 118 -------------------RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
R+KHP R + YTCW N+G+RID++L +
Sbjct: 256 KVGRRVFHRLVPDLLQDSCRNKHPNRPDMYTCWNVMMNYRPGNFGSRIDYVLASK----- 310
Query: 159 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
V + DIL LEGSDH PVY
Sbjct: 311 ----------GLKVEDADIL-------------------PHLEGSDHCPVY 332
>gi|116193731|ref|XP_001222678.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
gi|88182496|gb|EAQ89964.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
Length = 646
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L D+ + L DSEGRCVI + F+L VY P + D R +F+ + + + R
Sbjct: 125 LSDYVDEPTL--DSEGRCVILEFPAFVLIGVYSPA--TRDETRDEFRQAYINAIDVRVRN 180
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG---- 110
L+ G+++F+ GDLNI + D K E + F + +V G
Sbjct: 181 LVAMGKQVFLCGDLNIIRSEQDTAGLAERLRKEEMTLDDFFSTPSRCFLNHIVFGGHVAG 240
Query: 111 --------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HP R YTCW + A N+G+RID++LC+
Sbjct: 241 EREEGREEPVLWDLCREFHPTRPGMYTCWDTRKNARPGNFGSRIDYVLCS 290
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 353 LGQLSLKSFFHKRSNVSHD----DNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 408
GQ SLK FF ++ +N+S+ T N S T + + P+ + +
Sbjct: 488 FGQSSLKGFFKPKTPTPDTTPTVENHSVVGTPTASNKSATARTSGERRGPDEPSSTAAL- 546
Query: 409 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 468
D + E S D + K W ++ L + +P C+
Sbjct: 547 ENDTQNPIEESPKPQSFSPEKVFDPIEAKE------------SWSKL--LGKRVLPRCE- 591
Query: 469 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
H + C V KKPG GR FF+CAR GP+ + E C F W+
Sbjct: 592 HGDKCQTLVTKKPGVNCGRSFFMCARPLGPSGDKEQGTEFRCRTFIWS 639
>gi|47206818|emb|CAF91198.1| unnamed protein product [Tetraodon nigroviridis]
Length = 506
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
GG F D FR HP R A+TCW + TGA Q NYGTRID+I H L S FV
Sbjct: 185 GGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYGTRIDYIFA-------DHRLASEQFVA 237
Query: 170 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 229
DI+ + +EGSDH PV+ L +P P L +R
Sbjct: 238 -----ADIMPE-------------------VEGSDHCPVWGQLS-CSLVPSTKPPPLCTR 272
Query: 230 YLPIIRGVQQTLVSVLMKRE 249
YLP G QQ L +K E
Sbjct: 273 YLPEFAGKQQKLSHFFVKAE 292
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
P CK HKEPCV R VKK GP GR+FFVCAR +G ASNP+A C +F+W
Sbjct: 458 PSCKVHKEPCVLRTVKKDGPNMGRQFFVCARPQGHASNPDARCNFFEWV 506
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 90
+ NVY PRAD E R QFKLQF+ +LQ R E +L G + V+GD+N + ID CD
Sbjct: 10 VINVYCPRADPEKPERKQFKLQFYKLLQCRAEAILKDGSHVIVLGDINTSHQRIDHCDPS 69
Query: 91 PDFAK 95
+ +K
Sbjct: 70 DNVSK 74
>gi|171676121|ref|XP_001903014.1| hypothetical protein [Podospora anserina S mat+]
gi|170936126|emb|CAP60786.1| unnamed protein product [Podospora anserina S mat+]
Length = 645
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 87/222 (39%), Gaps = 55/222 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+ + +
Sbjct: 137 LDSEGRCVILEFPAFVLVGVYSPA--TRDESRDEFRHAFTEAMDVRVRNLVAMGKEVVLT 194
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GSF 113
GDLNI + +D K E + F + +V G
Sbjct: 195 GDLNIIRSELDTAGLVEQLRKEEVSLDDFFSSPSRRFLNQIVFGGRVVGTRDEGREEAVL 254
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R YTCW + N+G+RID++LC+ F+ ++
Sbjct: 255 WDLCREFHPTRTGMYTCWDTRKNCRPGNFGSRIDYVLCSSGI--------KDWFIDANIQ 306
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215
E L GSDH PVY +G+
Sbjct: 307 EG------------------------LLGSDHCPVYATMGDT 324
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 355 QLSLKSFFHKRSNV-SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 413
Q +LKSFF ++ V S + TD N ++ D S + E +P + P
Sbjct: 483 QGTLKSFFKPKTPVPSPSQEPTGTD---NTASATADISTASELLPAELPPEIQSPNQSLK 539
Query: 414 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 473
S E + + + D+K D N + W ++ L + +P C+ H E C
Sbjct: 540 GSA-ESSAKETPLTTVPTDDK----VFDPIENKAS---WSKL--LGKRVVPKCE-HGEDC 588
Query: 474 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN-----CGYFKWA 512
V+R+ KKPG GR FF+CAR GP+ E C F W+
Sbjct: 589 VSRITKKPGVNCGRSFFMCARPTGPSGKKEDGTTEFCCKTFIWS 632
>gi|165874707|gb|ABY68236.1| DNA lyase [Beauveria caledonica]
Length = 559
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 55/221 (24%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEG CV+ + F+L VY P + D RI+F+ F L R L+ G+++ V
Sbjct: 102 LDSEGSCVVLEFPSFVLLGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVIVA 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSF 113
GDLNI +D + K + W +L E
Sbjct: 160 GDLNIIRNEMDSSNIAESLQKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRERAVL 219
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 220 WDICRCFHPTRLGMHTCWDAKRKTRPANVGSRIDYILCS--------DGLKSWFVESNIQ 271
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
E L GSDH PVY + +
Sbjct: 272 EG------------------------LMGSDHCPVYATMSD 288
>gi|410670052|ref|YP_006922423.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
gi|409169180|gb|AFV23055.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
Length = 261
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +I D+G FIL N+Y P + R+ +K++F+ + L QGR++ +
Sbjct: 94 KFDSEGRILIADYGDFILLNIYFPNGKASPE-RLAYKMEFYDAFLEYALELKKQGRKLII 152
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W L + + D FRS HPE + YT
Sbjct: 153 CGDVNTAHREIDLARPKENETISGFLPEERAWIDRFLSQ---GYVDTFRSLHPEPGQ-YT 208
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W +GA N G RID+ +
Sbjct: 209 WWSMRSGARTRNVGWRIDYFYVS 231
>gi|164657069|ref|XP_001729661.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
gi|159103554|gb|EDP42447.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
Length = 317
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----PDFAKNEFRIWFRSML 106
+ F+H L++R L+ +GR + VVGD+N+ + D C++ +F+ + R WF+++L
Sbjct: 1 MAFYHALEERVRSLINEGRHVIVVGDMNVVASPRDHCESARVPAAEFSAHPARQWFQAIL 60
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQ 163
G D+ R PER YTCW + A NYGTR+D+ L P + Q D+Q
Sbjct: 61 APQG-PLMDMTRHFFPERDRMYTCWNTLIDARASNYGTRLDYTLVTQGLEPWI-QHADIQ 118
Query: 164 SHNFVTCHVNECDILIDYK 182
+ H C I +D +
Sbjct: 119 PQVHGSDH---CPIYLDLR 134
>gi|406912418|gb|EKD52031.1| hypothetical protein ACD_62C00127G0006 [uncultured bacterium]
Length = 289
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR ++ + F+ Y P SE RI +K+Q+ L ++ E L + + I V
Sbjct: 122 RFDDEGRTIVAHYDDFVFVGCYFPNGGSE-LERIPYKMQYNEFLLQKLESLREEHKHIVV 180
Query: 74 VGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD+N+A ID + + F K E R WF L + DVFR K+P+ R AY
Sbjct: 181 CGDMNVAHTEIDIKNPKANENNSGFTKTE-RDWFSQFL---SHKYVDVFRHKNPDARHAY 236
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCL 156
T W G Q N G RID+ + L
Sbjct: 237 TWWSYRPGVRQNNIGWRIDYFVVTEEML 264
>gi|373458129|ref|ZP_09549896.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
gi|371719793|gb|EHO41564.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
Length = 255
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FS+ E KI DSEGR +IT + F+LFNVY P D R+ +KL+F
Sbjct: 67 GVATFSRQEPAKIERELGIEKFDSEGRVLITHYDSFVLFNVYFPNG-QRDHGRVAYKLEF 125
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVES 109
+ L K L G ++ + GD N A ID + + + F R W L E
Sbjct: 126 YAELLKMANALRDAGNKVIITGDFNTAHREIDLKNPKSNQKTSGFLPEERAWIDRYLQE- 184
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ D FR +P+ ++ YT W A Q N G RID+ + + L
Sbjct: 185 --GWIDTFRHFYPQLKDQYTWWSYRFNARQRNIGWRIDYFMNSENLL 229
>gi|441675724|ref|XP_003276345.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nomascus
leucogenys]
Length = 479
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 174 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 233
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 234 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 293
Query: 111 -----GSFFDVFRSKHP 122
G F D +R P
Sbjct: 294 SASQVGPFIDSYRCFQP 310
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 428 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 476
>gi|159469496|ref|XP_001692899.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277701|gb|EDP03468.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1192
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLL 65
+L +D EGR VITDHG +L NVYGP + T R+++K+ F+ LQ R + L
Sbjct: 216 LGPGQLRALDGEGRVVITDHGALVLVNVYGPYVGVKRTEERMRYKIAFYRALQHRLDGFL 275
Query: 66 CQGRRIFVVGDLNIAPAAIDRCD 88
GRR+ V+GD NIAP D D
Sbjct: 276 AAGRRLVVLGDFNIAPERRDDSD 298
>gi|332860859|ref|XP_003317535.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
troglodytes]
Length = 466
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 415 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 463
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 41/188 (21%)
Query: 71 IFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-------GSFFDVFRSKH 121
+ ++GDLN A ID DA F ++ R W S+L G G F D +R
Sbjct: 140 VIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQ 199
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
P++ A+TCW + TGA NYG+R+D++L + ++ID
Sbjct: 200 PKQEGAFTCWSAVTGARHLNYGSRLDYVL----------------------GDRTLVIDT 237
Query: 182 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 241
+ + + GSDH PV L V +P P L +R+LP G Q +
Sbjct: 238 FQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCTRFLPEFAGTQLKI 287
Query: 242 VSVLMKRE 249
+ L+ E
Sbjct: 288 LRFLVPLE 295
>gi|407918296|gb|EKG11567.1| Exodeoxyribonuclease III xth [Macrophomina phaseolina MS6]
Length = 1051
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 91/234 (38%), Gaps = 59/234 (25%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
+E + + +D+EGRCV + F+L VY P + + +R F+ FF L R
Sbjct: 128 IEQAGRVDPAALDAEGRCVAVEFPAFVLLGVYSPA--NSNGMRDDFRHAFFSCLDARIRN 185
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS- 112
L +G+R+ + GDLN++ + ID +A + K R F ML GG
Sbjct: 186 LTKEGKRVILCGDLNVSRSEIDTANAEDNMRKEGITHEEYISVGNRRIFNQML--EGGDV 243
Query: 113 ------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 160
+D R HP R+ +T W A N+G+RID +LC+
Sbjct: 244 VPPRDSGREVPVLWDTCREFHPNRKGMFTHWEQKINARPGNFGSRIDFVLCS-------- 295
Query: 161 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
I K W + L GSDH PVY L E
Sbjct: 296 ------------------ISMKEWVES------ADIQEGLMGSDHCPVYAILKE 325
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 405 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 464
N P D +V ++ +S+ D F+D V+ W ++ + S P
Sbjct: 584 NNPPNADDPIAVADITPADST--DLDTSTPASPPFIDP---IVSKESWDKL--FTKPSPP 636
Query: 465 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 494
C+ H EPC+ KKPG GR F++C R
Sbjct: 637 RCEDHNEPCITLTTKKPGVNCGRAFWICPR 666
>gi|119613614|gb|EAW93208.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_a
[Homo sapiens]
Length = 294
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 243 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 291
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 32/139 (23%)
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 170
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 17 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL-------------------- 56
Query: 171 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 230
+ ++ID + + + GSDH PV L V +P P L +R+
Sbjct: 57 --GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCTRF 104
Query: 231 LPIIRGVQQTLVSVLMKRE 249
LP G Q ++ L+ E
Sbjct: 105 LPEFAGTQLKILRFLVPLE 123
>gi|310794037|gb|EFQ29498.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 635
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 55/233 (23%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P D+ R F+L + + L R L+ G+++ +
Sbjct: 125 LDSEGRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLT 182
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSF 113
GDLN+ +D C+ K + W F ++ +
Sbjct: 183 GDLNVIREEMDTCNVREALRKEGMSVEEWMGMPSRRLFNHLVFDGRVTGERDEGREAPVL 242
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 173
+D+ R HP R +TCW + N G+RID+ILC+
Sbjct: 243 YDLTRIFHPTRLGMFTCWETKRNMRPANNGSRIDYILCSA-------------------- 282
Query: 174 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL 226
K W G+ + L GSDH PVY L + ++ T L
Sbjct: 283 ------GIKDWFTGS------DIQEGLMGSDHCPVYANLADTVKVDGRDTSVL 323
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
+P C+ H EPC+ KKPG GR F++CAR G + E CG F W+
Sbjct: 575 VPRCE-HGEPCIILQTKKPGVNCGRSFYICARPLGQSGQKEKGTEWRCGTFIWS 627
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
Length = 257
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D E R ++ D+G F+LF+VY P + R+ +K++F+ + + L+ +GR I +
Sbjct: 91 FDDEQRAIVADYGDFLLFDVYFPNGKASKE-RLSYKMRFYDLFLDLMDRLVAEGRDIVIC 149
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+N A ID P+ + F R W L+E G F D FR HPE E Y+
Sbjct: 150 GDVNTAHKEIDLARPKPNEKISGFLPEERAWI-DRLIEHG--FLDTFRLFHPE-GEKYSF 205
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W T A + N G RID+ +
Sbjct: 206 WDMKTRARERNVGWRIDYFFVS 227
>gi|402084596|gb|EJT79614.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 550
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 87/224 (38%), Gaps = 59/224 (26%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P A D R F+L F + R L+ G+ + +
Sbjct: 137 LDSEGRCMILEFPAFVLIGVYSPAA--RDETRTDFRLGFQEAMDVRVRNLVAMGKHVVLT 194
Query: 75 GDLNIAPAAIDRCD----------AGPDFAKNEFRIWFRSMLVESGGSFF---------- 114
GDLNI +D + DF + ++ GG
Sbjct: 195 GDLNIIRGELDTAGLVDWLRKANMSLDDFLSTPSQRLLNHLVF--GGVVIGKRDHGRETP 252
Query: 115 ---DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
D+ R HP R+ YTCW + A N+G+RID++LC S +
Sbjct: 253 VMCDLGREFHPIRQGMYTCWETRRNARPSNFGSRIDYVLC------------SAGIRSWF 300
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215
V+ G+ L GSDH PVY L ++
Sbjct: 301 VD--------------------AGIQEGLLGSDHCPVYATLSDI 324
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W +I L + P C+ H EPC + V KKPG GR F++CAR GP+ E + CG
Sbjct: 482 WSKI--LGKRVAPNCE-HGEPCTSLVTKKPGINCGRSFYMCARPLGPSGEKEKDTEWRCG 538
Query: 508 YFKWAFSKSKQK 519
F W+ K K
Sbjct: 539 TFIWSSDWGKSK 550
>gi|355668896|gb|AER94341.1| APEX nuclease 2 [Mustela putorius furo]
Length = 259
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 208 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 257
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR +IT+ FILFN+Y P +D R+ +KL+F+ L + + L + ++I +
Sbjct: 87 KFDKEGRILITEFNEFILFNIYFPNG-QKDEERLNYKLEFYDALFEYLDKLKIEDKKIII 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERREAYTC 130
GD NIA ID +A + + F R ++ + G + D FRS H E + Y+
Sbjct: 146 CGDYNIAHREIDIKNAKANEKISGFLPIERKLIDKFISKG--YVDTFRSIHREEIK-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W A + N G RID+ L L +V E DIL D
Sbjct: 203 WSYRFKARERNAGWRIDYFLVTENLLE-------------NVKEADILND---------- 239
Query: 191 RWKGGMSTRLEGSDHAPVYMCL 212
+ GSDH PV + L
Sbjct: 240 ---------VMGSDHCPVSILL 252
>gi|320592520|gb|EFX04950.1| DNA lyase [Grosmannia clavigera kw1407]
Length = 795
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 85/227 (37%), Gaps = 62/227 (27%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGRC++ D F+L NVY P ++D R F+ F L R L+ GR + +
Sbjct: 143 IDAEGRCLVLDFPLFVLINVYCPARRNDD--RTDFRDAFLLALDARVRNLVAAGRHVVLC 200
Query: 75 GDLNIAPAAIDRCDA---------GPDFAKNEFRIWFRSMLV------------------ 107
GD+N +D A +E + RS +
Sbjct: 201 GDMNTMRHHLDTAAVWGHHGQVLPAEALAFDEDYLSLRSAAIFGRLLFDGDRITNTTTDI 260
Query: 108 --ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
S D R HP+RR YTCW + N+G+RID +LC S
Sbjct: 261 PPSSPPILHDACRELHPQRRGMYTCWDTRKNHRPANFGSRIDFVLC------------SP 308
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
+ V + DI +L GSDH PVY+ L
Sbjct: 309 RLMQLLVIQADI-------------------QPQLLGSDHCPVYVVL 336
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 443 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 502
E N+ A+ W + L + P+C+ H EPC V +KPG GR F++CAR GP
Sbjct: 713 EINDGAMAGWSALG-LGQRQSPMCE-HGEPCKIFVTRKPGVNSGRSFYMCARPPGPLGRR 770
Query: 503 EA----NCGYFKW 511
E C F W
Sbjct: 771 EKGTAWQCTTFFW 783
>gi|354546880|emb|CCE43612.1| hypothetical protein CPAR2_212560 [Candida parapsilosis]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
G D ++ + L IDSEGRCV+ + + ++F +Y P S +F+LQF L KR
Sbjct: 145 GYTDINEQQGLHIDSEGRCVVVELASNCVVFALYCPANSSGTDEGEEFRLQFLQQLMKRC 204
Query: 62 EFL-LCQGRRIFVVGDLNIAPAAIDRCDA---------------GPDF------------ 93
L +G+ + ++GD+N+ ID + G F
Sbjct: 205 HNLKFNEGKDVIIMGDINVCLDLIDSAEGINERIMAKQITDVSDGNQFEVANYDECCKFK 264
Query: 94 -------AKNEFRIWFRSMLVE------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQF 140
NE+ I RSM+ E + +D R RR+ YT W + T + Q
Sbjct: 265 QSKRARELMNEYVI--RSMIQECTSQTLTNQFLYDTTRYIQGRRRKMYTVWNTLTNSRQV 322
Query: 141 NYGTRIDHILCAGP 154
NYG+RID ILC+ P
Sbjct: 323 NYGSRIDLILCSSP 336
>gi|373486776|ref|ZP_09577448.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
gi|372011200|gb|EHP11799.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
Length = 258
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+ED+ D EGR V ++ G L Y P A S VR+ +K QF L +R
Sbjct: 88 GIEDY--------DCEGRIVQSERGDLTLLAGYFPNA-SSGLVRLPYKRQFALDLAERVR 138
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVF 117
+L QGR++ V GD+N+AP ID P F E R FR L DV
Sbjct: 139 QVLAQGRQLIVTGDMNVAPEEIDLARPKDNRMSPGFTDEE-REDFRGYLAS---GLRDVL 194
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
R ++P YT W GA N G RID L + + + D + H
Sbjct: 195 REQNPGTPGLYTWWSQRGGARAKNVGWRIDLFLVSEGLMGRVKDTRIH 242
>gi|337734384|gb|AEI72618.1| DNA lyase [Epichloe festucae]
Length = 642
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L VY P + D R F+ FF L R L+ G+ + +
Sbjct: 137 LDSEGRCVILEFPAFVLLGVYSPA--NRDESRDVFRTSFFEALDVRIRNLVSMGKEVILT 194
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSF 113
GDLN+ + +D + K + + W F ++ E
Sbjct: 195 GDLNVIRSEMDSTNVLETLRKEDMTLEEWVSLPTRRIFNQLIFEGSIVGERDEERQEPVL 254
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R+ HP R TCW + N G+RID+ILC+
Sbjct: 255 WDLCRNFHPTRLGMNTCWDTKRNTRPANNGSRIDYILCS 293
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 507
W ++ L + +P C+ H+EPC++ V KKPG GR F++C R GP+ E CG
Sbjct: 572 WSKL--LGKRVVPRCE-HEEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKEKGSEWRCG 628
Query: 508 YFKWA 512
F W+
Sbjct: 629 TFIWS 633
>gi|255020174|ref|ZP_05292243.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783591|ref|YP_004750198.1| exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970316|gb|EET27809.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557742|gb|AEK59496.1| Exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
Length = 253
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 47/205 (22%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D+EGR V+TD G F L+NVY P +D R+ FKL F+ ++ L+ +GR +
Sbjct: 88 FDAEGRVVVTDCGDFDLYNVYFPNG-KKDAQRLAFKLDFYAFFLEQVTALVRRGRSVIFC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD+N A +D A P+ + E R W E+G F D FR HPE R Y
Sbjct: 147 GDVNTAHTPLDL--ARPEANRRVSGFLPEERAWL-DRWREAG--FIDSFRHFHPEERR-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W +GA + + G R+D+ L
Sbjct: 201 SWWSLRSGARERDVGWRLDYFWVHESLL-------------------------------- 228
Query: 189 APRWKG-GMSTRLEGSDHAPVYMCL 212
PR KG G++T + G+DH PV++ L
Sbjct: 229 -PRLKGAGIATEVRGADHCPVWLEL 252
>gi|26348875|dbj|BAC38077.1| unnamed protein product [Mus musculus]
Length = 260
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 89
+LQ R E LL G + ++GDLN A ID CDA
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|26349295|dbj|BAC38287.1| unnamed protein product [Mus musculus]
Length = 260
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 89
+LQ R E LL G + ++GDLN A ID CDA
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|26333609|dbj|BAC30522.1| unnamed protein product [Mus musculus]
Length = 266
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 89
+LQ R E LL G + ++GDLN A ID CDA
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|408381604|ref|ZP_11179152.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815535|gb|EKF86105.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
Length = 259
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ + L +GR I V
Sbjct: 90 KFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMNFYDSFLDYADALKEEGRNIVV 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W L + D FR +PE E YT
Sbjct: 149 CGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFL---SHGYVDTFRELNPE-PENYT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A + N G R+D+
Sbjct: 205 WWSYRTRARERNVGWRLDYFFV 226
>gi|156838338|ref|XP_001642876.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156113453|gb|EDO15018.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 529
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
GL++ + DE L +DSEGRCV+ + + ++FNVY P + F+L++ VL KR
Sbjct: 147 GLDETNDDEALTLDSEGRCVVVELACNIVVFNVYCPANSGQTDDGQLFRLKYLKVLYKRI 206
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDA-------------GPDFAKN------EF---- 98
L G+ I ++GD+N ID+ +A G D + EF
Sbjct: 207 RNLKALGKNIVLMGDINSCRDLIDQAEALEANMIQITSTTTGEDIEEKYSQLAYEFVMNP 266
Query: 99 ----RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRI 146
R ML +S G D R ++R + YT W + NYG+RI
Sbjct: 267 EAPQRRMLNQMLTDSIIPGISQDGILVDTTRYVQTKKRLKMYTVWNTLKNTRPVNYGSRI 326
Query: 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 206
D IL + +LQ ++ + DIL D + GSDH
Sbjct: 327 DFILLS-------KELQD------YILQADILPD-------------------VMGSDHC 354
Query: 207 PVYM 210
PVY+
Sbjct: 355 PVYL 358
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H + + K P +GRRF+ C + G + N +CG+F+W
Sbjct: 482 PLCK-HGIEAILKTSKTP-TNYGRRFWSCEKPNGDSGNKAGSCGFFQWV 528
>gi|20071198|gb|AAH26769.1| Apex2 protein [Mus musculus]
Length = 246
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 89
+LQ R E LL G + ++GDLN A ID CDA
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|377552391|gb|AFB69794.1| DNA lyase, partial [Aspergillus flavus]
Length = 162
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 17 LDSEGRCVILEFPAFVLLGLYCP--ANRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 74
Query: 75 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGG------------S 112
GDLNI+ ID A K EF R F + LV SG +
Sbjct: 75 GDLNISRGEIDAAHASEAIRKGTTTEGEFISAPARRLF-NQLVYSGKVIGERDEGREQPA 133
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFN 141
FD+ RS HP RR YTCW A N
Sbjct: 134 LFDICRSFHPNRRGMYTCWEQKINARPGN 162
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ + EGR +I ++ F LFN+Y P +D R+QFK+ F+ K L+ QG+++ +
Sbjct: 87 RFNHEGRTIIMEYPEFTLFNIYFPNGQKDDE-RLQFKMDFYDCFLKDVNALVAQGKKVII 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A +D + + ++ F R W E+G + D +R HP+ E Y+
Sbjct: 146 CGDVNTAHTEMDLKNPKSNAKRSGFLPMEREWLDHFF-ENG--YVDTYRHLHPDTVE-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A N G RID+ + + D H VT + C + I+ K
Sbjct: 202 WWSYRFNARANNAGWRIDYFFVSDNAIDMVKDAAIHTEVTGS-DHCPVSIEIK 253
>gi|330920551|ref|XP_003299056.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
gi|311327471|gb|EFQ92889.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
Length = 634
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC++ + F+LF VY P + + R F+L F L+ R L G+ + +
Sbjct: 138 LDSEGRCLVLEFPAFVLFGVYSPA--NSNGQRDGFRLGFLTALETRIRNLTKMGKNVILT 195
Query: 75 GDLNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVESG-----------GSF 113
GDLN++ ID A ++ R F +L+
Sbjct: 196 GDLNVSRDLIDTAKAEDNMRAEGMTHAEYLSTPNRRIFNQLLLNGNVPGERDQGREEPVL 255
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D+ R HP+R +T W A N+G+RID ILC+
Sbjct: 256 YDLCREFHPDREGMFTHWEQKINARPGNFGSRIDFILCS 294
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 511
P C+ H EPC KK G FGR F+VC R GP+ E C F W
Sbjct: 577 PRCE-HGEPCTLYKTKKKGQNFGREFWVCPRPIGPSGVKETGTQWRCPTFTW 627
>gi|429862835|gb|ELA37442.1| DNA lyase [Colletotrichum gloeosporioides Nara gc5]
Length = 605
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 59/219 (26%)
Query: 20 RCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNI 79
RCV+ + F+L Y P + D+ R F+L + + L R L+ QG+ + + GDLN+
Sbjct: 126 RCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDVRVRNLVAQGKEVILTGDLNV 183
Query: 80 APAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESGGS-------------FFDV 116
+D C+ K + W F ++V GG+ D+
Sbjct: 184 ILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQLVV--GGNVTGARDEGREEPVLHDL 241
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 176
R HP+R+ +TCW + N G+RID++LC+ F ++ E
Sbjct: 242 TRIFHPDRQGMFTCWDTKRNTRPANNGSRIDYVLCSSGI--------KDWFTDSNIQEG- 292
Query: 177 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215
L GSDH PVY +G+V
Sbjct: 293 -----------------------LMGSDHCPVYAIIGDV 308
>gi|303288135|ref|XP_003063356.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455188|gb|EEH52492.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 573
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 42/183 (22%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQ 58
E F++ ++D+EGRCV+ D G F+L NVY G ++ D R FK F ++
Sbjct: 147 ELFTRARAAELDAEGRCVLVDFGGFVLVNVYVPATTGGSGSEDVDIARDAFKRDFLLAVE 206
Query: 59 KRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAK---------NEF------R 99
R + L+ GRR+ GD N+A +D R G +K EF R
Sbjct: 207 TRVDALVDAGRRVVACGDWNVARGTMDAAAARTSTGTTGSKLGSSSAAREREFVRACPHR 266
Query: 100 IWFRSMLVESGGS---------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 144
W L G D R +P+ +A+TCW +GA+ NYG
Sbjct: 267 AWLDRQLQRDDGGGDDDDADGGGRRRPRLIDARR--YPKTSDAFTCWHVASGAQLTNYGA 324
Query: 145 RID 147
RID
Sbjct: 325 RID 327
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFK 510
W+RI M + P C+GH E C R VKK FGR FF C R G N +A+CG+F+
Sbjct: 511 WKRIHDRM--APPKCRGHGETCKVRSVKKKESANFGRTFFCCPRPAGARGNKDADCGFFQ 568
Query: 511 WAFSK 515
WA +
Sbjct: 569 WAAGR 573
>gi|385809097|ref|YP_005845493.1| exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
gi|383801145|gb|AFH48225.1| Exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
Length = 262
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++ + D EGR +I D+ FILFN+Y P D R+++KL F+ + + L+ QGR+
Sbjct: 88 DIPRFDDEGRTLILDYKEFILFNIYFPNGKMSDE-RLKYKLDFYDAFLEYAKKLIQQGRK 146
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
I V GD+N A ID + + F R W L F D FR + ++
Sbjct: 147 IIVCGDVNTAHKEIDLARPKENEKTSGFLPIERQWIDKFL---ANGFVDTFRMFN-DQPG 202
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
YT W T A + N G RID+ +
Sbjct: 203 NYTWWDMQTRARERNVGWRIDYFFVS 228
>gi|440793198|gb|ELR14386.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 224
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++D EGR ++TDHG F+L N+Y P R+ FK F +QK L Q R + V
Sbjct: 93 EMDDEGRVMVTDHGTFVLLNIYFPNG-GRGGDRLTFKSDFQDEVQKYCSELRRQDRHVIV 151
Query: 74 VGDLNIAPAAIDRCDA-GPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
+GD+NIA +D ++ PD ++ E R W L ESG F D FR +HP
Sbjct: 152 LGDVNIAHTELDIYNSDDPDINEHSGFLPEERKWLSGFL-ESG--FVDTFRERHPGEGGH 208
Query: 128 YTCWPSNTGA 137
YT W +GA
Sbjct: 209 YTWWSPRSGA 218
>gi|453080166|gb|EMF08218.1| DNA lyase-like protein [Mycosphaerella populorum SO2202]
Length = 659
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
L S ++ +D+EGRCVI + F+L VY P + + +R F+ F L R
Sbjct: 128 LWQLSGEDPAGLDAEGRCVILEFPAFVLLGVYSPA--NSNGMRDGFRYGFLCALDCRIRN 185
Query: 64 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSMLVES---- 109
L+ G+ + +VGDLNI D + K EF R F +L++
Sbjct: 186 LIKSGKNVVLVGDLNITRHESDSASTLEEIRKKQATREEFLAGSNRRIFNQLLLDGEVLG 245
Query: 110 -------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+D R HP+R+ YT W + A NYG+RID +L A
Sbjct: 246 ERDEGRETAVLWDTTRGFHPDRKGMYTHWDTKINARPGNYGSRIDFVLVA 295
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 507
PLC+GH EPC + + KK G GR F++CAR GP + G
Sbjct: 581 PLCEGHSEPCKSMLTKKKGYNQGRSFWMCARPLGPTGEKDRTTG 624
>gi|298708328|emb|CBJ48391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 462
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW-EFLLCQGRRIF 72
K ++EGR + ++ F + VY P + E VR+ ++ + + V K + E L QG+ +
Sbjct: 255 KHNNEGRSITVEYEKFFVVTVYVPNS-GEKLVRLDYRTKEWDVALKAYVESLEAQGKPVV 313
Query: 73 VVGDLNIAPAAIDRCDAGPD-FAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
+ GDLN+A +D + G KN E R F S + +GG D FR HP+
Sbjct: 314 LNGDLNVAHLDLDIYNRGAKHLPKNAATTKEERDSFDSWV--NGGKVSDAFRRLHPDAEG 371
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W TGA N G R+D+ +C+
Sbjct: 372 AYTYWSVRTGARPVNRGLRLDYFVCS 397
>gi|415969502|ref|ZP_11558374.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
gi|339833429|gb|EGQ61275.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
Length = 257
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 37/201 (18%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR +
Sbjct: 91 RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGRAVVF 149
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD+N A AID + + F R+ L + + + D FR HP+ E Y+ W
Sbjct: 150 CGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-YSWWS 208
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
T A N G R+D+ +H+ PR
Sbjct: 209 QRTDARARNIGWRLDYFW-----IHESL----------------------------LPRL 235
Query: 193 KG-GMSTRLEGSDHAPVYMCL 212
+G G++T + GSDH PV++ L
Sbjct: 236 RGAGIATDVTGSDHCPVWLEL 256
>gi|198282493|ref|YP_002218814.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198247014|gb|ACH82607.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 255
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 37/201 (18%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR +
Sbjct: 89 RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGRAVVF 147
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD+N A AID + + F R+ L + + + D FR HP+ E Y+ W
Sbjct: 148 CGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-YSWWS 206
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
T A N G R+D+ +H+ PR
Sbjct: 207 QRTDARARNIGWRLDYFW-----IHESL----------------------------LPRL 233
Query: 193 KG-GMSTRLEGSDHAPVYMCL 212
+G G++T + GSDH PV++ L
Sbjct: 234 RGAGIATDVTGSDHCPVWLEL 254
>gi|218665721|ref|YP_002424683.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218517934|gb|ACK78520.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 253
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 37/201 (18%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR +
Sbjct: 87 RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGRAVVF 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD+N A AID + + F R+ L + + + D FR HP+ E Y+ W
Sbjct: 146 CGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-YSWWS 204
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
T A N G R+D+ +H+ PR
Sbjct: 205 QRTDARARNIGWRLDYFW-----IHESL----------------------------LPRL 231
Query: 193 KG-GMSTRLEGSDHAPVYMCL 212
+G G++T + GSDH PV++ L
Sbjct: 232 RGAGIATDVTGSDHCPVWLEL 252
>gi|410720602|ref|ZP_11359956.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410600729|gb|EKQ55254.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 259
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ + L +GR I V
Sbjct: 90 KFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDSFLDYADALKEEGRNIVV 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W L + D FR +P E YT
Sbjct: 149 CGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFLSH---GYVDTFRELNPG-PENYT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A + N G R+D+
Sbjct: 205 WWSYRTRARERNVGWRLDYFFV 226
>gi|367010570|ref|XP_003679786.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
gi|359747444|emb|CCE90575.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
Length = 522
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 95/243 (39%), Gaps = 68/243 (27%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
GL+D + E LK+DSEGRCV+ + + I+ NVY P F++++ VL KR
Sbjct: 147 GLDDEDESEGLKLDSEGRCVMIELACNIIVINVYCPANSGLSAEGSAFRMKYLKVLFKRI 206
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRC------------------------DAGPDFAKN- 96
L G+R+ ++GD+N+ ID DA F N
Sbjct: 207 RNLSEMGKRVILMGDVNVCRDLIDHAEGLEQASIRIGDGVSGSKIESKHRDACEQFIINP 266
Query: 97 --EFRIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTCWPSNTGAEQFNYGTRI 146
R ML +S GG D R + +R +AYT W + + NYG+RI
Sbjct: 267 DTPHRRMLNQMLADSILPEFAEGGILLDTTRLIQGRDRLKAYTVWNTLKNSRPVNYGSRI 326
Query: 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 206
D IL + + +V DIL + GSDH
Sbjct: 327 DFILAS-------------KSLKTNVTSADIL-------------------PEVTGSDHC 354
Query: 207 PVY 209
PVY
Sbjct: 355 PVY 357
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H + R + P GR+F++C +G + + ++CG+F+WA
Sbjct: 476 PLCK-HGLKAIQRTSRTPSNP-GRKFWICKLPKGSSDDESSSCGFFQWA 522
>gi|325960168|ref|YP_004291634.1| exodeoxyribonuclease iii Xth [Methanobacterium sp. AL-21]
gi|325331600|gb|ADZ10662.1| exodeoxyribonuclease III Xth [Methanobacterium sp. AL-21]
Length = 257
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D+EGR +ITD+G F+LFN+Y P R+ +K++F+ + + L QG+ I V
Sbjct: 90 KFDTEGRTLITDYGDFVLFNIYFPNGKMSKE-RLDYKMEFYDTFLEYADELKDQGKNIVV 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W +L + D FR + E E YT
Sbjct: 149 CGDVNTAHREIDLAHPKENSKISGFLPEERAWIDKLL---DHGYVDTFREFNQEPEE-YT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A + N G R+D+
Sbjct: 205 WWSYRTRARERNVGWRLDYFFV 226
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + ++ +F L NVY P A D R+ +LQ+ L + L CQ + + GDL
Sbjct: 88 EGRIITLEYKNFYLVNVYTPNA-QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVYCGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
N+A ID +A + + F R S L+ESG F D FR KHPE + YT W
Sbjct: 146 NVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESG--FVDSFRYKHPEETDHYTWWSYM 203
Query: 135 TGAEQFNYGTRIDHILCA 152
+ N G RID+ + +
Sbjct: 204 NKVRERNIGWRIDYFVVS 221
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D+EGR + +D G FILFNVY P + R+ FK++F+ + L QG++I +
Sbjct: 85 KFDTEGRVIASDFGDFILFNVYFPNGKASKE-RLDFKMEFYDAFLDHLDALKAQGKKIII 143
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPERREA 127
GD+N A ID + + F R W L++ G + D R S P +
Sbjct: 144 CGDVNTAHKEIDLARPKENEKVSGFLPLERAWI-GKLIDHG--YLDTLRMFSDQPGQ--- 197
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YT W T A + N G RID+ +
Sbjct: 198 YTWWDMKTKARERNVGWRIDYFFAS 222
>gi|406905854|gb|EKD47195.1| hypothetical protein ACD_66C00177G0002 [uncultured bacterium]
Length = 261
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ--GRR-I 71
+D EGR ++T+H F LFNVY P + D R+ +K++F+ KR+ LL + G++ +
Sbjct: 93 LDEEGRIILTEHKDFYLFNVYFPNG-ARDAGRLDYKIKFY----KRFYELLDEYAGKKPV 147
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GD N A ID + ++ F R W + E G + D FR K+P++R+
Sbjct: 148 MICGDFNTAHHEIDIARPKANETRSGFLPMERKWLDKL--EDKG-YIDTFRFKYPKKRDI 204
Query: 128 YTCWPSNTGAEQFNYGTRIDH 148
Y+ W T A + N G RID+
Sbjct: 205 YSWWDVITHARERNVGWRIDY 225
>gi|448513794|ref|XP_003867011.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
gi|380351349|emb|CCG21573.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
Length = 473
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 66/236 (27%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
G D + + L+IDSEGRCV+ + + ++F +Y P S +F+L+F L KR
Sbjct: 145 GYTDIDEKQGLQIDSEGRCVVVELVNNCVVFALYCPANSSGTDEGEEFRLRFLQQLLKRC 204
Query: 62 EFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAK----------------------- 95
L QG+ + ++GD+N+ ID + D AK
Sbjct: 205 HNLKFKQGKDVIIMGDINVCLDLIDSAEGINDRLVAKQITDISDGCSFELANYNECCKFK 264
Query: 96 ---------NEFRIWFRSMLVE-----SGGSF-FDVFRSKHPERREAYTCWPSNTGAEQF 140
N + I RSM+ E SG F +D R R++ YT W + T + Q
Sbjct: 265 QSRRARELMNAYVI--RSMVQERIDATSGDQFLYDTTRYIQGRRKKMYTVWNTLTSSRQV 322
Query: 141 NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE-----------CDILIDYKRWK 185
NYG+RID ILC+ S + + C N C + D+ WK
Sbjct: 323 NYGSRIDLILCS-----------SQDMLKCVSNADIWPFILGSDHCPVFTDFDPWK 367
>gi|154291711|ref|XP_001546436.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
Length = 578
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW-- 61
L+D+ D +DSEGRCVI + FIL VY P + D R +F++ F + L RW
Sbjct: 95 LQDYFLDAA-TLDSEGRCVILEFPAFILIGVYCPA--TRDETRDEFRIGFLNALDTRWSN 151
Query: 62 --EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 119
+ LL I +VG I DR D +W D+ R
Sbjct: 152 TYQPLLAGYLIISLVGGKVIG----DR-----DEGTEPQVMW-------------DISRG 189
Query: 120 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
HP R+ +TCW A N+G+RID++LC+
Sbjct: 190 FHPTRKGMFTCWDQKMNARPGNFGSRIDYVLCS 222
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 433 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 490
EK K DKE ++ VA W + L+ IP HKEPC++ + KK G GR F+
Sbjct: 480 EKTCKSRQDKEVHDPIVAKESWSK---LLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 536
Query: 491 VCARAEGPASNPEAN----CGYFKWA-FSKSK 517
+C R GP+ E N C F W+ SKS+
Sbjct: 537 MCPRPLGPSGQQEKNTEWRCNTFIWSTLSKSE 568
>gi|399887720|ref|ZP_10773597.1| exodeoxyribonuclease III [Clostridium arbusti SL206]
Length = 254
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR +IT+ +FILFN+Y P +D R+++KL F+ L + L +G+++ +
Sbjct: 87 RFDSEGRILITEFNNFILFNIYFPNG-QKDEERLKYKLDFYDALLEYLNKLKIEGKKLII 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID +A + + F R W ++ + D FR H + + Y+
Sbjct: 146 CGDYNTAHNEIDIKNAKANEKYSGFLPIERAWIDKFIL---NGYVDTFRYIHKDEIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W A + N G RID+
Sbjct: 202 WWSYRFKARERNAGWRIDYFFVT 224
>gi|308274119|emb|CBX30718.1| Exodeoxyribonuclease [uncultured Desulfobacterium sp.]
Length = 263
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + TD G FI FNVY P D R+Q+KL F++ + L QG+ + + G
Sbjct: 96 DEEGRILETDFGDFIFFNVYFPNGQMGDD-RLQYKLNFYNDFFAYTDSLKNQGKNLIISG 154
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D N A ID P+ + F R W ++ + D FR +PE+ + Y+ W
Sbjct: 155 DYNTAHNEIDLTHPKPNEKYSGFLRVERDWMDEIIKR---GYVDTFRYFYPEKVK-YSWW 210
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G R+D+I +
Sbjct: 211 SYRANARKKNVGWRVDYIFVS 231
>gi|408419182|ref|YP_006760596.1| exodeoxyribonuclease ExoA [Desulfobacula toluolica Tol2]
gi|405106395|emb|CCK79892.1| ExoA: exodeoxyribonuclease [Desulfobacula toluolica Tol2]
Length = 263
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
FS+ E D+EGR + D+ FILFN+Y P D R+++KL F+ L
Sbjct: 90 FSRPEF---DNEGRVIQLDYKKFILFNIYFPNGQMSDE-RLEYKLAFYDWFLDYANQLKD 145
Query: 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPE 123
QG+ + + GD N A ID + GP+ ++ F R +L V+ G + D +R +PE
Sbjct: 146 QGKSLIITGDFNTAHNEIDLKNPGPNSKRSGFLRIERDVLDHMVDMG--YVDTYRYFYPE 203
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
+ + Y+ W A + N G RID+ + +
Sbjct: 204 KVK-YSWWSYRFNARKNNAGWRIDYFFVTKDLIDK 237
>gi|344200944|ref|YP_004785270.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
gi|343776388|gb|AEM48944.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
Length = 253
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 37/201 (18%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +ITD G F L+NVY P +DT R+ FKL F+ + + GR +
Sbjct: 87 RFDREGRVLITDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVATGRAVVF 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD+N A AID + + F R+ L + + D FR HP+ Y+ W
Sbjct: 146 CGDVNTAHQAIDLARPKENTKISGFLPEERACLDQWVAAGWVDSFRHLHPD-SITYSWWS 204
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
T A N G R+D+ +H+ PR
Sbjct: 205 QRTNARARNIGWRLDYFW-----IHESL----------------------------LPRL 231
Query: 193 KG-GMSTRLEGSDHAPVYMCL 212
+G G++T + GSDH PV++ L
Sbjct: 232 RGAGIATDVTGSDHCPVWLEL 252
>gi|170759835|ref|YP_001786903.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169406824|gb|ACA55235.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 253
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +IT+ +F L N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 KFDSEGRILITEFKNFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|187779869|ref|ZP_02996342.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
gi|187773494|gb|EDU37296.1| exodeoxyribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 253
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 RFDSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVEEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YIDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
W A + N G RID+ + L + + + N V
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEV 240
>gi|168182409|ref|ZP_02617073.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
gi|182674470|gb|EDT86431.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
Length = 253
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 KFDSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|237794818|ref|YP_002862370.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|229261060|gb|ACQ52093.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 253
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 KFDSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 47/213 (22%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+F D+EGR +I ++ FILFN+Y P D R+ +KL+F+ + +
Sbjct: 84 GIEEF--------DTEGRILIAEYEDFILFNIYFPNGKMSDE-RLDYKLRFYDAIMDYSK 134
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRS 119
LL +G+ + + GD N A ID + + + F R + +E G F D +R
Sbjct: 135 NLLEEGKNLIICGDYNTAHREIDLKNPKQNEKSSGFLPIEREYIDRFLEIG--FIDAYRH 192
Query: 120 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 179
+P++ E YT W A + N G RID+ S+NF++ + + +IL
Sbjct: 193 FYPDKIE-YTWWSYMFKAREKNVGWRIDYFFV------------SNNFIS-KIKDVEIL- 237
Query: 180 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
T + GSDH PV + +
Sbjct: 238 ------------------THIHGSDHCPVKLTI 252
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + F L VY P A D R+ ++L++ +R+ L + + + G
Sbjct: 85 EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRF-RRYIAGLDAVKPVILCG 142
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSN 134
DLN+A ID +A + + F R + + G F D FR +PE+ +AYT W +
Sbjct: 143 DLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYTWWSNM 202
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKG 194
+ N G RID+ L + D Q H V
Sbjct: 203 PKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------------------------- 237
Query: 195 GMSTRLEGSDHAPVYMCLGEVPE 217
GSDH PV + L EVP+
Sbjct: 238 -------GSDHCPVVLTLAEVPQ 253
>gi|300176314|emb|CBK23625.2| unnamed protein product [Blastocystis hominis]
Length = 252
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
+ D + D EGR T + + NVY P ED+ R F+ +F+ ++ + +
Sbjct: 48 YDSDFVKSADMEGRVCFTFFDNCAILNVYFPCGSEEDSARCSFRERFYELIMDLVKIIKV 107
Query: 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFA----KNEFRIWFRSMLVESGGSFFDVFRSKHP 122
++GD N A A C G + F + F M+ + G D FR+ +P
Sbjct: 108 DYPNCILLGDFNTAIA----CRIGWRLCYHPKSSSFYLAF--MIRDGGCGMIDCFRALYP 161
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
R AY+C+ + N+GTRID+I+C P
Sbjct: 162 SERNAYSCFNTKLKGRINNFGTRIDYIVCTRP 193
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + F L VY P A D R+ ++L++ +R+ L + + + G
Sbjct: 85 EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRF-RRYIAGLDAVKPVILCG 142
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSN 134
DLN+A ID +A + + F R + + G F D FR +PE+ +AYT W +
Sbjct: 143 DLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYTWWSNM 202
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKG 194
+ N G RID+ L + D Q H V
Sbjct: 203 PKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------------------------- 237
Query: 195 GMSTRLEGSDHAPVYMCLGEVPE 217
GSDH PV + L EVP+
Sbjct: 238 -------GSDHCPVVLTLAEVPQ 253
>gi|153937900|ref|YP_001390827.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180137|ref|ZP_02614801.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|170757676|ref|YP_001781117.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|226948816|ref|YP_002803907.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384461879|ref|YP_005674474.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|387817755|ref|YP_005678100.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|421833792|ref|ZP_16268989.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|429247526|ref|ZP_19210769.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
gi|152933796|gb|ABS39294.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|169122888|gb|ACA46724.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|182668909|gb|EDT80885.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|226843845|gb|ACO86511.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295318896|gb|ADF99273.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|322805797|emb|CBZ03362.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|409744929|gb|EKN43319.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|428755480|gb|EKX78108.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
Length = 253
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 KFDSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|379010717|ref|YP_005268529.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
gi|375301506|gb|AFA47640.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
Length = 254
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
++EGR +I ++ FIL+NVY P +D R+ FK+ F LQ + LL + + V
Sbjct: 88 FNNEGRTIIMEYPDFILYNVYFPNGQKDDE-RLNFKMAFNQCLQNDIQKLLDAKKNVIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA ID + + ++ F R W L D +R +HPE + Y+
Sbjct: 147 GDINIAHQEIDLKNPKENSKRSGFLPEERAWIDDFL---SIGMVDSWRVQHPEEVK-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W A N G RID + P + + V C DIL D
Sbjct: 203 WSYRFNARAHNAGWRIDSFFVSEPFMSR---------VDC----TDILND---------- 239
Query: 191 RWKGGMSTRLEGSDHAPVYMCL 212
+ GSDH P+ + L
Sbjct: 240 ---------VLGSDHCPIVLTL 252
>gi|344228427|gb|EGV60313.1| hypothetical protein CANTEDRAFT_127448 [Candida tenuis ATCC 10573]
Length = 556
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
E E+F ++ L+ID EGR V+ + ++F++Y P + + K +F +L KR
Sbjct: 163 ENYEEFDEELALQIDREGRAVVVELASGLVIFSLYCPANSMQTEEGERLKNKFMELLIKR 222
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------------GPDFAKNEF------- 98
+ L+ G++I V+GD+NI+ ID+ D G F K
Sbjct: 223 CQNLIKLGKQIMVLGDINISLDLIDQADGINERLNKKLIKYSNDGEAFEKTNHKECVKFK 282
Query: 99 RIWFRSM-----------LVESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 144
R F M + E GS +D R E YTCW + G+ Q N+G+
Sbjct: 283 RERFSRMHLSKFVFSPLNVPEITGSERFLYDTTRVFRGRTMEIYTCWNTLNGSRQTNFGS 342
Query: 145 RIDHILCA 152
RID IL
Sbjct: 343 RIDLILTT 350
>gi|374584780|ref|ZP_09657872.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
gi|373873641|gb|EHQ05635.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
Length = 346
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+SEGR +IT++ F+L+NVY P R+++KL F+ W+ +G+RI + G
Sbjct: 180 NSEGRVMITEYPGFVLWNVYFPNG-GRGPERVEYKLAFYEHCLDLWQKTRSEGKRIIITG 238
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREAYTCWPS 133
D N A ID + F R+ L +ES G + D+FR ++ E YT W
Sbjct: 239 DYNTAHKEIDLARPKENSKVTGFLPEERAFLDKMESLG-YIDIFR-RYDASPEKYTYWDQ 296
Query: 134 NTGAEQFNYGTRIDHILCAGPCL 156
T A + N G RID+ + L
Sbjct: 297 FTRARERNAGWRIDYFWISEETL 319
>gi|339500619|ref|YP_004698654.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
gi|338834968|gb|AEJ20146.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
Length = 258
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G++DF D EGR +I D F L + Y P + E R+ +KL F + +
Sbjct: 88 GIKDF--------DDEGRVLIADFDRFTLISAYFPNS-QEAGARLDYKLAFCDAMLETCN 138
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVF 117
L+ G+ I + GD NIA ID + P + E R W L + D F
Sbjct: 139 KLVQSGKNIILCGDYNIAHTPIDLARPEDNEENPGYLPEE-RAWMTKFLF---AGYVDTF 194
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
R++HP YT W T A + N G RID+
Sbjct: 195 RAEHPGEGGHYTWWSYRTRARERNIGWRIDY 225
>gi|294495018|ref|YP_003541511.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
gi|292666017|gb|ADE35866.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
Length = 244
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +I HF+LFN+Y P +S D R+Q+K+ F+ + + L +G + V
Sbjct: 77 RFDHEGRILIAFFDHFVLFNIYFPNGNSSDE-RLQYKMDFYGAFLEYTQELRQEGYSVVV 135
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GDLN A AID + ++ F R W L F D FR + E YT
Sbjct: 136 CGDLNTAHKAIDIARPKQNEKRSGFLPVEREWIDKFLSH---GFLDTFRLFNEEEGN-YT 191
Query: 130 CWPSNTGAEQFNYGTRIDHILCAG 153
W T A N G R+D+ +
Sbjct: 192 WWDLKTRARDRNVGWRLDYFFVSA 215
>gi|424827324|ref|ZP_18252133.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
gi|365980247|gb|EHN16283.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
Length = 253
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L + L+ G+++ +
Sbjct: 87 RFDSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYAALFNYCDELVEAGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|257460806|ref|ZP_05625907.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
gi|257442137|gb|EEV17279.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
Length = 252
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 8/150 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G +LFN+Y P +D R+ +K++F+ L QG + G
Sbjct: 86 DDEGRVLQHRFGDVVLFNIYFPNG-QKDEARLAYKMEFYAKFLAYARSLAEQGLGVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W VE+ G F D FR+ H E R+AY+ W
Sbjct: 145 DVNTAHREIDLANPKANSKTSGFLPIERAWLDE--VEAAG-FVDTFRAVHGELRDAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
A N G RID+ + Q D
Sbjct: 202 SYRFNARAKNVGWRIDYFFISANLRSQLKD 231
>gi|148379451|ref|YP_001253992.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153934303|ref|YP_001383830.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153935156|ref|YP_001387380.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
gi|148288935|emb|CAL83022.1| putative exodeoxyribonuclease [Clostridium botulinum A str. ATCC
3502]
gi|152930347|gb|ABS35847.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152931070|gb|ABS36569.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
Length = 253
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K DSEGR +IT F L N+Y P D R+Q+KL F+ L + L+ +G+++ +
Sbjct: 87 KFDSEGRILITGFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGKKLVI 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N A ID + + + F R W ++E G + D FR+ +P++ + Y+
Sbjct: 146 CGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKIK-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 202 WWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + ++ F L N+Y P + +E RI +++Q+ L++ + L Q + + + GDL
Sbjct: 88 EGRAITLEYPDFYLVNLYVPNSQNE-LARIDYRMQWEDDLRRYLQALDAQ-KPVILCGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSNTG 136
N+A ID + GP+ F R L E F D FR HP+ Y+ W
Sbjct: 146 NVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGFTDTFRHLHPDATGIYSWWSMRFR 205
Query: 137 AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGM 196
A + N G RID+ L + N + + + DIL+D
Sbjct: 206 ARERNAGWRIDYFLVS-------------NRLAPQIRKADILMD---------------- 236
Query: 197 STRLEGSDHAPVYMCL 212
+ GSDH PV + L
Sbjct: 237 ---ILGSDHCPVTLEL 249
>gi|358337780|dbj|GAA56104.1| AP endonuclease 2 [Clonorchis sinensis]
Length = 350
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 48/197 (24%)
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNE-----FRIWFRSMLVESG--------------G 111
+ + GDLN+ +D C+ PD E +R W S+L G
Sbjct: 11 VVISGDLNVYHTILDHCE--PDIVTLETHTTAYRQWLNSLLTPHSRDPQIPASDDYPLPG 68
Query: 112 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 171
+F D+FR HP R++ +TCW + TGA + NYG R+D+IL +H H
Sbjct: 69 NFVDIFRHVHPTRKDGFTCWSARTGARETNYGVRLDYILLDEVLATWFDRCTAHTLCADH 128
Query: 172 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP--QHSTPSLASR 229
+ T + GSDH P + L ++ + P+L SR
Sbjct: 129 M-------------------------TNITGSDHCPTWTHLPLCLDVNGLNYPLPALCSR 163
Query: 230 YLPIIRGVQQTLVSVLM 246
P + Q L L+
Sbjct: 164 NWPQCQAKQVGLKGFLV 180
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKP----GPTFGRRFFVCARAEGPASNPEANCG 507
W+R+ + + P C+GH EPCV R VK+ G GRRF+VCAR +G NP A C
Sbjct: 282 WQRLLSGPKKA-PRCRGHDEPCVLRSVKQASTNSGSRRGRRFWVCARPQGSKDNPVARCS 340
Query: 508 YFKW 511
F W
Sbjct: 341 TFIW 344
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR + D F L N+Y P D R+Q+KL F+ L QG+ + +
Sbjct: 90 KFDIEGRLIRLDFDDFTLLNIYYPNG-GRDEERLQYKLDFYDAFLDYANDLRDQGKNLVI 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GDLN A ID + + F R W L + D FR H +E YT
Sbjct: 149 CGDLNTAHKEIDLARPKQNEDVSGFLPIEREWVSKFL---DNGYVDTFRMLHENEKEKYT 205
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A + N G R+D+
Sbjct: 206 WWSYRTRARERNVGWRLDYFFV 227
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
++EGR + + F L NVY P A D R+ ++L++ +K + L + + + + G
Sbjct: 87 EAEGRILTLEFASFYLVNVYTPNA-KRDLSRLPYRLEWEDRFRK-YIVQLDEKKPVIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN+A ID +A + + F R F +L G F D FR +P+R +AYT W
Sbjct: 145 DLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNELL---GAGFLDSFRELYPDRTDAYTWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
+ N G RID+ L + + H+ E
Sbjct: 202 SFMPKVRERNIGWRIDYFLISEK-------------LRPHLKE----------------- 231
Query: 192 WKGGMSTRLEGSDHAPVYMCL 212
G+ + + GSDH PVY+ L
Sbjct: 232 --AGIDSHIMGSDHCPVYVEL 250
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 27/197 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L + D EGR + ++ F L NVY P + T R+++++Q+
Sbjct: 64 GTAVFSKTEPLSVTYGLGQEEHDQEGRVITAEYPDFYLVNVYTPNSQRGLT-RLEYRMQW 122
Query: 54 FHVLQKRWEFLLCQG----RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSM 105
V Q C G + + V GDLN+A ID + + F R F+
Sbjct: 123 EDVFQD-----YCAGLARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQF 177
Query: 106 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
L F D FRS +P++ AYT W A + N G RID+ L + + D+ H
Sbjct: 178 LDHG---FVDSFRSLYPDKEGAYTWWSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIH 234
Query: 166 NFVTCHVNECDILIDYK 182
N V + C + +++K
Sbjct: 235 NEVMGS-DHCPVELEWK 250
>gi|268679182|ref|YP_003303613.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268617213|gb|ACZ11578.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 254
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + G +LFNVY P + R++ K+QF+ E L G+ I + GD+
Sbjct: 90 EGRILEHHFGDVVLFNVYFPNGQQSEE-RLRHKMQFYSDFLAHTEALRTMGKGIIICGDV 148
Query: 78 NIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
N A ID + + + F R W ++L + + D FR H ++AY+ W
Sbjct: 149 NTAHREIDLANPKANEDISGFLPIERAWIDTLLAKG---YLDTFREVHGNVKDAYSWWSY 205
Query: 134 NTGAEQFNYGTRIDHILCA 152
+GA + N G RID+ +
Sbjct: 206 RSGARERNVGWRIDYFFIS 224
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ + D+EGR ++ + F+L N Y P + SE R+ +KL + + KR L+ +GR +
Sbjct: 90 IAEFDAEGRALLVEFSDFVLINGYFPNSQSEGA-RLDYKLAYCDAILKRCNSLVGEGRHV 148
Query: 72 FVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
V GD NIA ID + P F E R W S L + D FR + E
Sbjct: 149 VVCGDYNIAHKPIDLARPKENEGNPGFLPEE-RAWMSSFL---DAGYTDTFRIFNNEGGN 204
Query: 127 AYTCWPSNTGAEQFNYGTRIDHI 149
YT W T + N G R+D+
Sbjct: 205 -YTWWSYRTKGRERNVGWRLDYF 226
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + RI ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRISWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ SK+E L + D EGR V+ ++ F L NVY P A +R+ ++L +
Sbjct: 64 GVLTLSKEEPLSVRYGIGIAEHDLEGRVVVCEYSQFYLVNVYVPNAQ-RGLLRLPYRLSW 122
Query: 54 FHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRS 104
+ FL L + + V GDLN+A ID R +AG F+ E R F +
Sbjct: 123 EKAFRG---FLSGLVAHKGVLVCGDLNVAHTEIDLTNPQANRYNAG--FSDPE-RHAFSA 176
Query: 105 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+L E F D +R +PE++EAYT W A + N G RID+ L +
Sbjct: 177 LLQEG---FIDTYRHFYPEQKEAYTWWSYIGQARERNVGWRIDYFLAS 221
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGRC+ ++ F + NVY P A + V + +L + +K + L Q + + + G
Sbjct: 1081 DTEGRCITVEYETFFVVNVYVPHA-GRNLVTLPKRLDWNEQFEKFIKNLDSQ-KPVIICG 1138
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTCWPSN 134
D+N+A ID + + F + R M G + D++R +PE+ +AYT W
Sbjct: 1139 DMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYM 1198
Query: 135 TGAEQFNYGTRIDHILCA 152
A N G R+D+ L +
Sbjct: 1199 RNARPNNVGWRLDYFLVS 1216
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
Length = 257
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +I D+G F+L N+Y P + R+ +K++F++ + + L QGR+I V
Sbjct: 90 EFDREGRVLIADYGAFVLLNIYFPNGKASPE-RLAYKMRFYNAFLEYADRLKAQGRKIVV 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W ++ + D FR + + + YT
Sbjct: 149 CGDVNTAHKEIDIARPRENSKISGFLPVERAWMDKLIAH---GYVDTFRLFNDQPGQ-YT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W + T A + N G RID+ +
Sbjct: 205 FWDTVTRARERNVGWRIDYFFVS 227
>gi|224371156|ref|YP_002605320.1| ExoA protein [Desulfobacterium autotrophicum HRM2]
gi|223693873|gb|ACN17156.1| ExoA [Desulfobacterium autotrophicum HRM2]
Length = 262
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR + D FILFNVY P D R+Q+K+ F+ + L +GR + +
Sbjct: 93 RFDNEGRILELDFEDFILFNVYFPNGQMSDE-RLQYKMDFYEAFFAHADRLRKKGRSLVI 151
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERREAYTC 130
GD N A ID + P+ ++ F R + LVE G + D FR +P+ + Y+
Sbjct: 152 TGDFNTAHNEIDLKNPKPNSKRSGFLPVEREVLDRLVERG--YVDTFRHFNPDTVK-YSW 208
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 178
W A N G RID+ D+ +VT + DIL
Sbjct: 209 WSYRFNARANNAGWRIDYFFVT-------QDIIDKGWVTRTFIDNDIL 249
>gi|319790081|ref|YP_004151714.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
gi|317114583|gb|ADU97073.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
Length = 259
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 81/198 (40%), Gaps = 35/198 (17%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D E R + F + NVY PR + + R FKL F L+ + + VVG
Sbjct: 86 DDEKRLITVWLEPFPIVNVYVPRGGEKGSERHAFKLYFLTKLKLFLQESFSPDEPLAVVG 145
Query: 76 DLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D N+A + +D D P F ++E R F +L FD+FR HP+ YT
Sbjct: 146 DFNVARSELDVYDPAVWRGRPGFMEDE-RQAFEELL---SFGLFDLFRELHPD-EPGYTW 200
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W TG N G RID+IL P L + EC +L + +R G P
Sbjct: 201 WDIETGGFARNRGLRIDYILVTEPLLKRAQ-------------ECRVLREARRKLGGLLP 247
Query: 191 RWKGGMSTRLEGSDHAPV 208
SDHAP+
Sbjct: 248 ------------SDHAPL 253
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ +L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLK-----VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 MEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 3 GLEDFSKDELLKI-------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 55
G F+K E L + D EGR V+ ++ F L NVY P A E R+++++Q+
Sbjct: 64 GTAIFTKHEPLSVTYNFEGHDDEGRAVLLEYDKFYLLNVYVPNAQPE-LKRLEYRMQWED 122
Query: 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVES- 109
L+ L + + + + GDLN+A ID + P F+ E R+ + E
Sbjct: 123 DLRAMLS-ELAKKKHVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEE-----RAKMTELL 176
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
G F D FR +PE+ AY+ W A + N G RID+ +
Sbjct: 177 GAGFTDTFRHLYPEQEGAYSWWSYRGNARKNNTGWRIDYFVV 218
>gi|294659648|ref|XP_462042.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
gi|199434123|emb|CAG90528.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
Length = 565
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 50/225 (22%)
Query: 5 EDFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63
E+ + + LKIDSEGRCV I + I+F++Y P ++L+F +L R +
Sbjct: 159 EEIDEVKGLKIDSEGRCVCIELASNIIVFSLYCPANSIGSEEGESYRLEFLKILLGRCHY 218
Query: 64 LL-CQGRRIFVVGDLNIAPAAIDRCD--------------------AGPDFAKNEFR--I 100
L G+ + ++GD+N++ ID D +G +F K ++ I
Sbjct: 219 LKHIMGKDVIIIGDINVSLDLIDHADTMNEKVKQKIVKPVRNGEGNSGTEFEKINYKQCI 278
Query: 101 WFR--------------SMLVESGGS------FFDVFRSKHPERREAYTCWPSNTGAEQF 140
F+ S L S + +D R R YT W + TGA Q
Sbjct: 279 DFKVSTPARKLLNSYTISTLDPSPANRSESQFLYDTTRYTQGRRMGMYTVWNTLTGARQS 338
Query: 141 NYGTRIDHILCAGPCLHQ---KHDLQSHNFVTCHVNECDILIDYK 182
NYG+RID IL + L + K D+ + + H C I D++
Sbjct: 339 NYGSRIDLILTSSDVLLKSISKADIWPYIMGSDH---CPIFTDFE 380
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + + HF L NVY P A D R+ ++L++ +R+ L + + + GDL
Sbjct: 88 EGRIITLEFQHFYLVNVYTPNA-KRDLSRLSYRLEWEERF-RRYLQQLDAVKPVIICGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSNTG 136
N+A ID +A + + F + R + + F D FR +P+R + Y+ W
Sbjct: 146 NVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLLAAGFIDSFRFFYPDRTDVYSWWSYMAK 205
Query: 137 AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+ N G RID+ L + + D + + CHV
Sbjct: 206 VRERNIGWRIDYFLVSARLSEKLVDAE----IDCHV 237
>gi|28211273|ref|NP_782217.1| exodeoxyribonuclease III [Clostridium tetani E88]
gi|28203713|gb|AAO36154.1| exodeoxyribonuclease III [Clostridium tetani E88]
Length = 260
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+F D+EGR +I++ F L N+Y P D R+ +KL+F+ +
Sbjct: 87 GIEEF--------DNEGRVLISEFEEFTLLNIYFPNGQMNDE-RLDYKLRFYDAILDYCN 137
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR 118
L+ +G+++ + GD N A ID + + + F R W + + DV+R
Sbjct: 138 DLVSKGKKLIICGDYNTAHREIDLKNPKNNEKYSGFLPIEREWIDKFI---NNGYVDVYR 194
Query: 119 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+ +PE+ E Y+ W A + N G RID+ + L D + H
Sbjct: 195 NFYPEKVE-YSWWSYRFKARERNAGWRIDYFFVSDNVLPLIKDTKIH 240
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ FSK E L + D EGR V + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|339482626|ref|YP_004694412.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
gi|338804771|gb|AEJ01013.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
Length = 257
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ---FKLQFFHVLQKRWEFLLCQGRR 70
+ID+EGR + D G+ + ++Y P S + +I F +FF VL+ L+ GR
Sbjct: 87 EIDAEGRFIQADFGNLSIISLYLPSGSSGEHRQIAKFFFMEKFFPVLKT----LMASGRE 142
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
I + GD NIA ID + + + F R+W ++L + G F DVFR +PE +
Sbjct: 143 IILCGDWNIAHKEIDLKNWRSNQKNSGFLPEERMWLSNVLDDVG--FVDVFRQLNPE-PD 199
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
YT W + A N G RID+ A P + QK
Sbjct: 200 QYTWWSNRGQAWTKNVGWRIDY-QVATPVIAQK 231
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 39/200 (19%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--QGRRIFV 73
+ EGR + ++ F L NVY P + D R+ ++L++ ++ E+LL Q + + +
Sbjct: 86 EPEGRILTLEYEGFYLVNVYTPNS-QRDLARLPYRLEWEERIR---EYLLGLDQIKPVIM 141
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWP 132
GDLN+A ID +A + + F R + GS F D FR K+PE AYT W
Sbjct: 142 CGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGFVDAFRYKYPEAEGAYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
+ N G RID+ + + + D Q H CDI+
Sbjct: 202 YMAKVRERNIGWRIDYFIVSEKLKERILDSQIH---------CDIM-------------- 238
Query: 193 KGGMSTRLEGSDHAPVYMCL 212
GSDH PV + L
Sbjct: 239 ---------GSDHCPVALEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|406963318|gb|EKD89414.1| hypothetical protein ACD_34C00070G0007 [uncultured bacterium]
Length = 256
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L + D EGR + + FILFN+Y P R+ +KL+F+ L + +G+ I
Sbjct: 87 LDEFDVEGRVIQSKLDDFILFNIYFPNGQRGQD-RVDYKLRFYARLLDMCKEEHAKGKNI 145
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GD N A ID + + + F R W + L E+G F D FR +PE+ +
Sbjct: 146 IITGDFNTAHKEIDLANPKENSKISGFLPEERAWIDTYL-ENG--FTDAFRLLYPEKVQ- 201
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
YT W A G R+D+ L + P + + D+
Sbjct: 202 YTWWTYRVNARARGIGWRLDYYLVSNPFMQRVKDV 236
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|333986432|ref|YP_004519039.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
gi|333824576|gb|AEG17238.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
Length = 259
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR +I D+G F+LFN+Y P R+Q+K+ F+ + + L +G+ I V
Sbjct: 90 KFDLEGRTLIADYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDAFMEYADKLKDEGKNIVV 148
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W L + D FR + E + YT
Sbjct: 149 CGDVNTAHKEIDLARPKENEKISGFLPEERAWIDEFL---NHGYVDTFREFNQEEGQ-YT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A N G R+D+
Sbjct: 205 WWSYRTRARDRNVGWRLDYFFV 226
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIGEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|254796778|ref|YP_003081615.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590017|gb|ACT69379.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
Length = 260
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQGRRIFVVGDLNIAPAAIDRCDA 89
L +VY P A + + R ++K+QF L +R +LL I + GD+N AP ID D
Sbjct: 103 LISVYVPNAQAAGSPRFEYKMQFHDALARRIHCYLLNNNDIILLGGDMNAAPEDIDVYDH 162
Query: 90 GPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
F I RS L E FD FR K+P ++E ++ W G Q N G RIDH
Sbjct: 163 VKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPTKQE-FSWWDYRGGGLQRNEGMRIDH 221
Query: 149 ILCAG 153
IL +
Sbjct: 222 ILASA 226
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKT-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARNKNIGWRIDYFLCSNP 223
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRISYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKERAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|444315057|ref|XP_004178186.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
gi|387511225|emb|CCH58667.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
Length = 527
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 98/247 (39%), Gaps = 70/247 (28%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
GL+D + E LK+DSEGRCV+ + + ++ +VY P ++ F+L+F VL KR
Sbjct: 148 GLKD--ETEALKLDSEGRCVLVELACNIVVVSVYCPANSTQTEEGELFRLKFLSVLFKRI 205
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF------------------AKNEFRIWF- 102
L G+++ ++GDLN+ ID + F K IW
Sbjct: 206 RNLDTLGKKVILMGDLNVCKDLIDHAEILDKFNIEITNDSQGSVIERTYDEKVHDFIWAP 265
Query: 103 ----RSML-----------VESGGSFFDVFRS-KHPERREAYTCWPSNTGAEQFNYGTRI 146
R ML + G D R + +R + YT W + A NYG+RI
Sbjct: 266 DAPQRRMLNQILSDSLDSQLARTGILVDSTRVYQGRDRLKIYTVWNTLKNARPINYGSRI 325
Query: 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 206
D++ + +Q + DIL ++ GSDH
Sbjct: 326 DYVFISSKLKNQ-------------IKAADIL-------------------PKVLGSDHC 353
Query: 207 PVYMCLG 213
PVY +G
Sbjct: 354 PVYADIG 360
>gi|374339472|ref|YP_005096208.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
gi|372101006|gb|AEX84910.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
Length = 254
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
DSEGR +IT++ +F LFN+Y P + + R+Q+K+ F++ L + E + I +
Sbjct: 88 FDSEGRTLITEYDNFSLFNIYFPNGKAREE-RLQYKMDFYYYLLEFLEDYKKKQPNIIIC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+N A ID + + F R W +L ESG F D FR + E YT
Sbjct: 147 GDVNTAHKEIDLARPKENENTSGFLPIEREWIDKLL-ESG--FVDTFRMFNKEPGN-YTW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W T A + N G RID+ +
Sbjct: 203 WDYKTRARERNVGWRIDYFFVS 224
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNTG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNVGWRIDYFLCSNP 223
>gi|307721179|ref|YP_003892319.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
gi|306979272|gb|ADN09307.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
Length = 258
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + T +G +LFNVY P +D R+ +K++F+ E L +G+ I V GD+
Sbjct: 94 EGRIIETHYGDIVLFNVYFPNG-QKDEERLAYKMKFYDDFLAYCEQLKDEGKSIIVCGDV 152
Query: 78 NIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
N A ID + + + F R W L + D FR H ++ +AY+ W
Sbjct: 153 NTAHREIDLKNPKANSKTSGFLPIEREWIDKFL---NHGYIDTFRYVHGDKEDAYSWWSY 209
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 193
A N G RID+ + D ++DY
Sbjct: 210 RFNARVKNVGWRIDYFFISEDLAENLEDA--------------FILDY------------ 243
Query: 194 GGMSTRLEGSDHAPV 208
+EGSDH P+
Sbjct: 244 ------IEGSDHCPI 252
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQF 53
++ L+D DE D EGR + + +FIL NVY P + E VR+ ++ L +
Sbjct: 77 IQILQDIGIDEH---DQEGRVIAAEFENFILLNVYVPNS-GEKLVRLDYRKIWDKELLAY 132
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVES 109
F L R + C GD N+A ID ++ K+ + I S ++E+
Sbjct: 133 FQQLNSRKPLIAC--------GDFNVAHQEIDIARPKANYNKSAGYTQTEIDGISRMLEA 184
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
G F D FR HPE AY+ W GA N G RID++L + +
Sbjct: 185 G--FVDTFRHLHPETV-AYSWWSYRAGARAKNIGWRIDYVLTSQALI 228
>gi|365983476|ref|XP_003668571.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
gi|343767338|emb|CCD23328.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
Length = 556
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 39/187 (20%)
Query: 3 GLEDFSKD---ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 58
G E+ + D E L +DSEGRCV+ + + ++ +VY P S F+++F VL
Sbjct: 142 GFENITFDDESEALSLDSEGRCVMVELACNIVVISVYCPANSSRTLEGELFRMKFLRVLF 201
Query: 59 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---GPDFAKNE------------------ 97
KR E L G+ + ++GD+N+ ID +A G KNE
Sbjct: 202 KRIENLHHLGKEVVLMGDVNVCRDLIDHAEALEVGGISIKNETTGIEIEAEYQESCRNFI 261
Query: 98 ------FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYG 143
+R ML +S G D R K R + YT W + NYG
Sbjct: 262 LNPDVPYRRLLNQMLTDSIVPELAQTGFLVDTTRMKQSRNRLKMYTVWNTLKNYRPVNYG 321
Query: 144 TRIDHIL 150
+R+D+IL
Sbjct: 322 SRVDYIL 328
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLCK H E + R K G+RF++C + G +NP+A+CG+F+W
Sbjct: 510 PLCK-HGEESILRT-SKTSSNPGKRFWICKKPRGDLNNPDASCGFFQW 555
>gi|194333003|ref|YP_002014863.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
gi|194310821|gb|ACF45216.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
Length = 258
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D E R V+ F L Y PR + + KL + + LL +GR
Sbjct: 86 EIPDFDIENRTVVLHGRGFSLIGTYVPRGEGD--AHYGVKLNYLEGVATYIGGLLDEGRE 143
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERREA 127
I + GD+N+A A+D + R RS L ++ G D+ R +HP R
Sbjct: 144 IILTGDMNVAHTALDVHHSQNKPGAVGLRAEERSALDRQLQLG--LHDIMRERHPGREGL 201
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
YT WP GA + N G RID +G L Q D+
Sbjct: 202 YTWWPYWKGARERNLGWRIDCFYLSGGLLSQVQDV 236
>gi|42525008|ref|NP_970388.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
gi|39577219|emb|CAE81042.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
Length = 257
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 3 GLEDFSKDE---------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
GL +SK E + K D EGR + D G + N Y P + E T R+ FKL+F
Sbjct: 69 GLALYSKKEPDDVRIGLGIPKFDIEGRWLEADFGPITVVNSYWPNSQREHT-RLPFKLEF 127
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVES 109
+KR + L +GR + + GD NIA ID + + F R W L
Sbjct: 128 CAAAEKRLQALRKKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAWMTRFL--D 185
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR K + E YT W G + N G R+D+ L
Sbjct: 186 KLEWVDSFR-KFEQGPEHYTWWSYRPGVREKNIGWRLDYFLV 226
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVNYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|407893404|ref|ZP_11152434.1| exodeoxyribonuclease III [Diplorickettsia massiliensis 20B]
Length = 261
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D++ R +I G + N+Y P S D+ + ++KL + LQ L R + VVG
Sbjct: 89 DTQRRLLIATLGPLRVLNLYVPNGASLDSEKYEYKLAWLAQLQDYLAKELATQRSVIVVG 148
Query: 76 DLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NIAP D D AG R F+ L++ G D FR HPE Y+ W
Sbjct: 149 DFNIAPEDRDVYDPSRWAGHVLVSQPERQAFQQ-LIDLG--LVDTFRLFHPEANH-YSWW 204
Query: 132 PSNTGAEQFNYGTRIDHIL 150
A + N+G RIDHIL
Sbjct: 205 DYRAAAFRRNHGLRIDHIL 223
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ +L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 MEFKKFLK-----VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNDG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|406606096|emb|CCH42456.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Wickerhamomyces
ciferrii]
Length = 558
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 37/187 (19%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
G + +D +ID+EGRC+I + G+ ++ +VY P QF+LQFF L R
Sbjct: 144 GYPNLEEDISHQIDNEGRCIILEMGNGIVVISVYCPANSMGTEEGEQFRLQFFEALFSRI 203
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEF------------- 98
L G+ + ++GD+NI+ ID D D K ++F
Sbjct: 204 RNLEKLGKHVVLMGDINISKDLIDSADGINDRMKMGKLLKISDPHKFEELNREQALNFIR 263
Query: 99 ----RIWFRSMLVES---------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 145
RI +L++S D R + YT W + T + NYG+R
Sbjct: 264 RSLPRIMLNELLIDSIDQDMKSEKSRVMIDTVRKIQGRKHGLYTVWNTLTNSRPGNYGSR 323
Query: 146 IDHILCA 152
ID IL
Sbjct: 324 IDLILAT 330
>gi|367003866|ref|XP_003686666.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
gi|357524968|emb|CCE64232.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
Length = 534
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 71/259 (27%)
Query: 11 ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
E L +DSEGRCVI + + ++ + Y P + QF+++F VL KR L G+
Sbjct: 159 EALHLDSEGRCVIIELACNMVIISTYCPANSTLTDEGQQFRIKFLKVLFKRIRNLESMGK 218
Query: 70 RIFVVGDLNIAPAAIDRCDA--------------------GPDFAKNEF-------RIWF 102
++ ++GDLNI ID+ +A PD A + R
Sbjct: 219 KVVLMGDLNICRDLIDQAEALEVNGIRILPETTGNMIENEYPDLASSFILKPERVQRRLL 278
Query: 103 RSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
++ +S G D R ++R + YT W + NYG+RID IL +
Sbjct: 279 NQIITDSFIADLSKNGCMIDTTRFIQSKKRLKMYTVWNTLKNTRSINYGSRIDFILLSS- 337
Query: 155 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
++ +Q+ N + ++ GSDH PVY+ +
Sbjct: 338 --GYQNLIQNANIL-----------------------------PQVMGSDHCPVYLDMKL 366
Query: 215 VPEIPQH---STPSLASRY 230
+I + P +RY
Sbjct: 367 PTDIASNIEIKIPRFEARY 385
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H E CV + + +G++F+ C R +G ++N +++C +F+W
Sbjct: 488 PLCK-HGEKCVLKT-SRTSSNYGKKFWACKRPKGESNNEDSSCDHFEWV 534
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|334132309|ref|ZP_08506067.1| Putative Nuclease [Methyloversatilis universalis FAM5]
gi|333442619|gb|EGK70588.1| Putative Nuclease [Methyloversatilis universalis FAM5]
Length = 260
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V D G + ++Y P S R + K +F Q L GR I V
Sbjct: 87 EFDDEGRYVEADFGDLTVISLYLPSGSSAPE-RQEAKFRFLDRFQPHLAALRASGREIVV 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE-AY 128
GD NIA ID + + + F R W ++L E G + DV+R+ HP+ E Y
Sbjct: 146 CGDWNIAHQEIDLKNWKGNLKNSGFLPEERAWMTALLGE--GGWVDVYRTLHPDATEDCY 203
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
T W + A N G RID+ + A P + K
Sbjct: 204 TWWSNRGQARAKNVGWRIDYQI-ATPGIAAK 233
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ---GRRIFVV 74
EGR + + F L NVY P A D R+ ++L++ ++R+ L Q + + V
Sbjct: 88 EGRVITLEFEDFYLVNVYTPNA-KRDLSRLDYRLEW----EERFRTYLLQLDERKPVIVC 142
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPS 133
GDLN+A ID +A + + F + R + + F D FR +P+R + Y+ W
Sbjct: 143 GDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRTDVYSWWSY 202
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+ N G RID+ L + + D + + CHV
Sbjct: 203 MAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|390939744|ref|YP_006403481.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
gi|390192851|gb|AFL67906.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
Length = 254
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + G LFNVY P + R+ K++F+ E L +G+ I + GD+
Sbjct: 90 EGRILEHHFGDVALFNVYFPNGQQSEE-RLSHKMKFYSDFLAHTEALRQKGKGIIICGDV 148
Query: 78 NIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
N A ID + + + F R W ++L E G + D FR H + ++AY+ W
Sbjct: 149 NTAHREIDLANPKANENTSGFLPIERAWMDTLL-EKG--YLDTFREVHGDVKDAYSWWSY 205
Query: 134 NTGAEQFNYGTRIDHILCA 152
+GA + N G RID+ +
Sbjct: 206 RSGARERNVGWRIDYFFIS 224
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ FSK E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 32/170 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ FSK E L + D+EGR V + F L NVY P RA + R+ ++
Sbjct: 64 GVVTFSKTEPLNVSYGIGIEEHDTEGRVVTCEFDKFYLVNVYTPNSQRALARLEYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKN-----LELQKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
S L+ +G F D FR +P + +AYT W A N G RID+ LC+
Sbjct: 175 -SELLNAG--FIDTFRHFYPTKEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|187918395|ref|YP_001883958.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
gi|119861243|gb|AAX17038.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
Length = 253
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ +SK E +K+ D EGRC+I + FIL N Y P + + R+ +KL+F
Sbjct: 67 GVALYSKIEPIKLENMRMEIFDREGRCLIAHYRDFILINAYFPNSQALRK-RLNYKLEFL 125
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESG 110
L+ + G+ + + GD NIA ID + F I W + L
Sbjct: 126 MSLESIANSFVTAGKNVVICGDFNIAHTEIDLSNPKSSRESAGFYIEETTWMDNFL---N 182
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
G + D FR + E YT W T A + N G RID+ L
Sbjct: 183 GGYVDTFRMFNGEPGN-YTWWDYRTRARERNIGWRIDYFLV 222
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 MEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ +L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLK-----VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ---GRRIFVV 74
EGR + + F L NVY P A D R+ ++L++ ++R+ L Q + + V
Sbjct: 88 EGRVITLEFEGFYLVNVYTPNA-KRDLSRLDYRLEW----EERFRTYLLQLDERKPVIVC 142
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPS 133
GDLN+A ID +A + + F + R + + F D FR +P+R + Y+ W
Sbjct: 143 GDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRTDVYSWWSY 202
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 172
+ N G RID+ L + + D + + CHV
Sbjct: 203 MAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 43/207 (20%)
Query: 9 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 68
K ++ + DSEGR + ++ FIL N Y P + E R+ +K+ F + E G
Sbjct: 81 KFDIERFDSEGRYIELEYEDFILINCYFPNS-QEKGKRLDYKIDFCDEILNYLEERKKSG 139
Query: 69 RRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
+ + + GD NIA ID + P + E R W + +E+G + D FR +PE
Sbjct: 140 KAVIITGDYNIAHKPIDLARPKDNEENPGYLPEE-REWM-TKFIEAG--YVDSFRKFYPE 195
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
+ YT W T A + N G RID+ C++++ + ILID
Sbjct: 196 EVK-YTWWSYRTRAREKNIGWRIDYF-----CINKESE--------------GILID--- 232
Query: 184 WKPGNAPRWKGGMSTRLEGSDHAPVYM 210
G+ + GSDH P+Y+
Sbjct: 233 ----------SGIRNDVFGSDHCPIYI 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ +L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLK-----VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|317032475|ref|XP_001394977.2| DNA lyase [Aspergillus niger CBS 513.88]
Length = 555
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 4 LEDFSKDEL--LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
+E S+ E+ +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 124 IEQLSQLEVDAATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRRSFIDLMDARI 181
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAG 90
L+ G+R+FV GDLNI+ ID AG
Sbjct: 182 RNLVAMGKRVFVTGDLNISRGEIDAAHAG 210
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 512
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 495 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 547
>gi|21229250|ref|NP_635172.1| exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452211659|ref|YP_007491773.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
gi|20907825|gb|AAM32844.1| Exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452101561|gb|AGF98501.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
Length = 258
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK++ +K+ D EGR + TD+ F+L N+Y P + R+ +K+ F
Sbjct: 71 GVGTFSKNKPIKLEKGMGIEVFDREGRFLRTDYEDFVLLNIYFPNGKASQE-RLGYKMAF 129
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVES 109
+ L +G+++ + GD+N A ID + + F R W L
Sbjct: 130 YDAFLDYANALKSEGKKLVICGDVNTAHKEIDLARPKQNEMISGFLPEERAWMDKFL--- 186
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+ D FR +PE Y+ W TGA N G R+D++ +
Sbjct: 187 AAGYLDSFRMFNPEGGN-YSWWSMRTGARSRNVGWRLDYVFVS 228
>gi|34499702|ref|NP_903917.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
gi|34105553|gb|AAQ61907.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
Length = 258
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGR + D G + ++Y P S D R Q K F V E L +GR I +
Sbjct: 89 IDAEGRFLQLDFGKLSVVSLYLPSGSSSDE-RQQVKFDFLDVFMPHLEKLRAEGRDIVIC 147
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD NIA ID + + + F R W +L G + DV+R+ +PE YT
Sbjct: 148 GDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMTDLLGRVG--WRDVWRNLYPE-APGYTW 204
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
W + A + G RID+ + P L + + S + +++DY+R
Sbjct: 205 WSNRGQAYAKDVGWRIDYQIVT-PSLMELAESASVYKDEKFSDHAPLIVDYRR 256
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + + EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHNKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKT-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|389581306|ref|ZP_10171333.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
gi|389402941|gb|EIM65163.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
Length = 263
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + D FILFN+Y P D R+ +KL F+ + L +G + V G
Sbjct: 96 DGEGRIIRMDFEPFILFNIYFPNGQMSDE-RLSYKLGFYDWFLDYAQKLRDEGNSLIVTG 154
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERREAYTCWP 132
D N A ID + P+ ++ F R +L V G + D FR +PE E Y+ W
Sbjct: 155 DFNTAHNEIDLKNPAPNAKRSGFLRIERDILDKMVNMG--YVDTFRHFYPEAVE-YSWWS 211
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
A + N G RID+ DL +N V + DI
Sbjct: 212 YRFNARKNNAGWRIDYFFVT-------RDLIENNIVKDAFIDNDIF-------------- 250
Query: 193 KGGMSTRLEGSDHAPVYMCL 212
GSDH PV + +
Sbjct: 251 ---------GSDHCPVGLVV 261
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|71083659|ref|YP_266379.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|71062772|gb|AAZ21775.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
Length = 258
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA- 89
L N+Y P + DT + +K + L K+ + L + I + GD NI P+A D +
Sbjct: 104 LINIYTPNGNPVDTDKYTYKKNWLDKLIKQLKTLSKKNENIILAGDFNILPSAEDAYNIK 163
Query: 90 ---GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146
+ E R FR M+ F D +R H E +E YT W GA Q N G RI
Sbjct: 164 GFEDDALYRLEIRKKFREMI---NLGFHDAYRHIHGE-KEGYTYWDYMRGAWQKNNGLRI 219
Query: 147 DHILCAGPCLH 157
DH L + L+
Sbjct: 220 DHFLVSNSLLN 230
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|119953317|ref|YP_945526.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
gi|119862088|gb|AAX17856.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
Length = 252
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 41/201 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGRC+I + FIL N Y P + S R+ +KL+F L+ + G+ I + G
Sbjct: 88 DREGRCLIAHYRDFILINAYFPNSQSLRK-RLPYKLEFLMSLESIANMFVTSGKNIVICG 146
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NIA ID + F I W + L G + D FR + + YT W
Sbjct: 147 DFNIAHTEIDLANPKTSRESAGFYIEETTWMDNFL---NGGYVDTFRMFNMDPGN-YTWW 202
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
T A + N G RID+ + + F V + IL
Sbjct: 203 DYKTRARERNIGWRIDYFIV-------------NEFFKSKVKDALIL------------- 236
Query: 192 WKGGMSTRLEGSDHAPVYMCL 212
+ GSDH PV++ L
Sbjct: 237 ------REVMGSDHCPVFLEL 251
>gi|21674945|ref|NP_663010.1| AP Xth family endonuclease [Chlorobium tepidum TLS]
gi|21648175|gb|AAM73352.1| AP (apurinic or apyrimidinic) endonuclease, xth family [Chlorobium
tepidum TLS]
Length = 253
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D E R ++ F L Y PR D E+ R KL++ L+ LL +GR + ++G
Sbjct: 88 DIENRTLVLHAPQFTLIGTYVPRGDGEE--RYAVKLRYLADLKAFIAELLTEGREVILLG 145
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N+A ID + G + E R + L G D+ R +P++++ +T W
Sbjct: 146 DINVALRDIDVHRSQNKPGAIGLRPEERAAIEAHL---GLGLLDIVRELNPDKKDLFTWW 202
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQK 159
P+ A + N G RID I P L +K
Sbjct: 203 PNWKFARERNLGWRIDCIYLT-PALARK 229
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLNVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|88608769|ref|YP_506301.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600938|gb|ABD46406.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 265
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQGRRIFVVGDLNIAPAAIDRCDA 89
L ++Y P A + + R ++K+QF L +R +LL + + GD+N AP ID D
Sbjct: 108 LISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYLLNNNDIMLLGGDMNAAPEDIDVYDP 167
Query: 90 GPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
F I RS L E FD FR K+P ++E ++ W G Q N G RIDH
Sbjct: 168 VKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPTKQE-FSWWDYRGGGLQRNEGMRIDH 226
Query: 149 ILCAG 153
IL +
Sbjct: 227 ILASA 231
>gi|91763300|ref|ZP_01265264.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|91717713|gb|EAS84364.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 258
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA- 89
L N+Y P + DT + +K + L K+ + L + I + GD NI P+A D +
Sbjct: 104 LINIYTPNGNPVDTDKYTYKKDWLDKLIKQLKTLSKKNENIILAGDFNILPSAEDAYNIK 163
Query: 90 ---GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146
+ E R FR M+ F D +R H E +E YT W GA Q N G RI
Sbjct: 164 GFEDDALYRLEIRKKFREMI---NLGFHDAYRHIHGE-KEGYTYWDYMRGAWQKNNGLRI 219
Query: 147 DHILCAGPCLH 157
DH L + L+
Sbjct: 220 DHFLVSNSLLN 230
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 62 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 121
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 122 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 172
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 173 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 221
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 MEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFS 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|449019372|dbj|BAM82774.1| similar to dna-(apurinic or apyrimidinic site) lyase
[Cyanidioschyzon merolae strain 10D]
Length = 952
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 93 FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC- 151
F + R+W ML S F D+FR K P RR+AY+CW + T A NYGTRID+IL
Sbjct: 371 FETHPSRVWLHRML--SDDLFRDLFREKWPNRRDAYSCWNTQTQARLTNYGTRIDYILLS 428
Query: 152 --AGPCLH-QKHDLQSHNFVTCH---VNECDILIDYKRW 184
AGP L DL + + H V E +ID ++W
Sbjct: 429 CNAGPYLRCTACDLLPNVMGSDHCPCVAELAPVIDTEKW 467
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
E L ++E ++D EGR ++ D IL +VY P A +E+ R+ +K +F L+ R
Sbjct: 198 EALGTAEREEHRQLDEEGRALVLDVCGLILVHVYVPNAANEE--RLFYKQRFLTCLEDRC 255
Query: 62 EFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 106
L+ Q R + ++GDLN A ID C+ P A+ E + +L
Sbjct: 256 LHLVRTQNRIVVILGDLNTAHERIDHCN--PQEAEREAAKLYPKLL 299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
P C GH+EP V R VK+ GP GR+F+VC R GP C +F+W
Sbjct: 875 PRCHGHQEPAVLRTVKQ-GPHRGRQFYVCRRPAGPIER-GGRCNFFQW 920
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 50 GVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 109
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 110 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 161
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 162 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMGWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---DAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
Length = 254
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 41/203 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ + EGR +I ++ F L+N+Y P D R+QFK+ F+ + + +G ++ +
Sbjct: 87 RFNHEGRTIILEYPDFTLYNIYFPNGSQSDE-RLQFKMDFYDGFWHDVDERVARGEKVII 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + ++ F R W G + D +R +PE + Y+
Sbjct: 146 CGDVNTAHREIDLKNPKSNAKRSGFLPIEREWMDHFF---AGGYIDTYRYFYPE-QVTYS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W A + N G RID+ + N D+L D
Sbjct: 202 WWSYRFNARKNNAGWRIDYFFASD-------------------NAKDLLAD--------- 233
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
+ T + GSDH P+ + L
Sbjct: 234 ----AAIHTDVTGSDHCPISLTL 252
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|426405542|ref|YP_007024513.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862210|gb|AFY03246.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
Length = 255
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 3 GLEDFSKDE---------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
GL +SK E + K D EGR + D G + N Y P + E T R+ FKL+F
Sbjct: 67 GLALYSKKEPDDVRIGLGIPKFDIEGRWLEADFGPITVVNSYWPNSQREHT-RLPFKLEF 125
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVES 109
+KR + L +GR + + GD NIA ID + + F R W L
Sbjct: 126 CAAAEKRLQALRKKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAWMTKFL--D 183
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR K + + YT W G + N G R+D+ L
Sbjct: 184 KLEWVDSFR-KFEQGPDHYTWWSYRPGVREKNIGWRLDYFLV 224
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ EGR + + +F L NVY P R S R++++ +F LQ+ L + +
Sbjct: 86 EPEGRTITLEFENFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LDALKPVI 140
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYT 129
V GDLN+A ID +A ++ F R S+L+++G F D FR+ +P+R + Y+
Sbjct: 141 VCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAG--FIDTFRTFYPDRTDVYS 198
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 180
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 199 WWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D+EGR + ++ +F L NVY P + +R+ ++LQ+ V + EFL L + + +
Sbjct: 86 DTEGRVITCEYEYFYLVNVYTPNS-QRGLLRLPYRLQWESVFR---EFLQNLASHKEVLI 141
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG D +N F L++ G D +R +P++
Sbjct: 142 CGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAF-----GQLLQLG--LIDTYRHFYPDKT 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
E YT W + N G RID+ L + Q D
Sbjct: 195 EVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKD 230
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 39/204 (19%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + F L VY P A D R++++L++ ++ + L + + V G
Sbjct: 86 EPEGRIITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERFRRYLQELDAH-KPVIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID +A + + F R + L+E+G F D FR ++P+R +AYT W
Sbjct: 144 DLNVAHQEIDLKNAKSNQGNSGFTPEERDKMTRLLEAG--FIDTFRHRYPDRTDAYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
+ N G RID+ L V+ +N D + D K
Sbjct: 202 FMPKVRERNIGWRIDYFL-----------------VSARLN--DFIKDAK---------- 232
Query: 193 KGGMSTRLEGSDHAPVYMCLGEVP 216
+ + GSDH PV + + ++P
Sbjct: 233 ---IDAAITGSDHCPVILEMEDIP 253
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|392412977|ref|YP_006449584.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
gi|390626113|gb|AFM27320.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
Length = 259
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + D FILFNVY P R+Q+K++F+ + L + R+
Sbjct: 91 RFDVEGRFLRLDFPDFILFNVYFPNGKMGPE-RLQYKMEFYDAFLSMLQELRKEQPRLVF 149
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
VGD+N A ID + + F R W ++ E + D FR +P+ E Y+
Sbjct: 150 VGDVNTAHNEIDLARPKANEKVSGFLPIERRWMDKVVSE---GYVDTFRHAYPDAVE-YS 205
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCL 156
W +GA + N G RID++ L
Sbjct: 206 WWDLKSGARKRNVGWRIDYVFVTKEML 232
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 50 GVVTFTKKEPLSVSYGIDIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 109
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 110 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFS 161
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 162 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|313682316|ref|YP_004060054.1| exodeoxyribonuclease III [Sulfuricurvum kujiense DSM 16994]
gi|313155176|gb|ADR33854.1| exodeoxyribonuclease III [Sulfuricurvum kujiense DSM 16994]
Length = 258
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ I +EGR V +G LFNVY P +D R+ +KL+F+ E L +G++I
Sbjct: 89 IDIMNEGRIVEHHYGDIALFNVYFPNG-QKDEERLAYKLEFYERFLDYCEALRREGKKII 147
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD+N A ID + + + F R W +L + D FR H ++ Y
Sbjct: 148 ICGDVNTAHRPIDLKNPKSNEKTSGFLPIERDWIDKLL---SHGYIDTFRHVHGDKENEY 204
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W A N G RID+ +
Sbjct: 205 SWWSYRFSARSKNVGWRIDYFFIS 228
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A N G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 50 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 109
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 110 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 161
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 162 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|392966891|ref|ZP_10332310.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
gi|387845955|emb|CCH54356.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
Length = 258
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLCQGR-RI 71
D EGR + TD G L N Y P + + V+++F F++ +Q+ L Q R ++
Sbjct: 89 DCEGRILRTDFGDLTLLNCYFPSGTTGEVRQGVKMEFLDDFYNYVQR-----LRQERPKL 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERR 125
VVGD NIA AID D P KN E R W G D FR KHP+
Sbjct: 144 IVVGDYNIAHNAIDIHD--PIRNKNTTGFLPEERAWMNKWF---GSGMTDAFRYKHPD-E 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHI 149
AY+ W GA N G RID++
Sbjct: 198 VAYSWWSYRAGARTNNKGWRIDYV 221
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINVEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 50 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 109
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 110 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFS 161
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 162 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|114775670|ref|ZP_01451238.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
gi|114553781|gb|EAU56162.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
Length = 263
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
+ D+EGR V+TD G + + Y P ++ F QF ++ + L QGR
Sbjct: 93 RFDAEGRFVMTDFGTLSVISAYFPSGSGTPERQAGKMVFLEQFLPLITR----LKDQGRE 148
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
+ + GD+NIA ID + + + F R WF L F D+FR +PER E
Sbjct: 149 LIICGDINIAHRNIDLKNWRGNRKNSGFLPEERAWFDQCL---NAGFVDLFRQLYPER-E 204
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILC 151
Y+ W + A N G RID+ LC
Sbjct: 205 QYSWWSNRGQARANNVGWRIDYHLC 229
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ +F L VY P A D R+ F+L + + + + L + + + V G
Sbjct: 87 DTEGRVITLEYENFYLVTVYTPNA-RRDLSRLDFRLAWEEMF-RGYLIKLDEHKPVIVCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID +A + + F R + L+++G F D FR +P+R +AYT W
Sbjct: 145 DLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDAG--FIDSFRYLYPDRTDAYTWWS 202
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
+ N G RID+ L + R P
Sbjct: 203 FMPKIRERNVGWRIDYFLASA-----------------------------RLAPAIV--- 230
Query: 193 KGGMSTRLEGSDHAPVYMCL 212
+ G+ +++ GSDH PV + L
Sbjct: 231 EAGIDSQILGSDHCPVVLTL 250
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR ++ ++ F L NVY P + E T R +++ F L+ L Q + +
Sbjct: 86 DKEGRIIVAEYATFFLVNVYTPNSKRELERLTYRQEWEDDFRSFLKG-----LEQYKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG F E S+L++SG F D +R +P++
Sbjct: 141 VCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FIDSYRYFYPDKE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHIL---CAGPCLHQKH 160
AYT W A Q N G RID+ L C L + H
Sbjct: 195 HAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAH 232
>gi|225024988|ref|ZP_03714180.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
gi|224942218|gb|EEG23427.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ + D+EGR V D G+ + ++Y P S + R Q K +F L QGR I
Sbjct: 85 IAEFDAEGRFVQVDFGNLSVISLYLPSGSSSEE-RQQLKFRFLAAFYPMLRELKTQGRDI 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GD NIA ID + + + F R W ++VE G + D++R+ +PE
Sbjct: 144 VICGDWNIAHQNIDLKNWKGNLKNSGFLPEEREWIGKVIVELG--WVDIWRTLYPE-MPG 200
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
YT W A + G RID+ + A P L ++
Sbjct: 201 YTWWSQRGQAYAKDVGWRIDYQM-ATPALAER 231
>gi|399020091|ref|ZP_10722231.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
gi|398096101|gb|EJL86430.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
Length = 258
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V D G + ++Y P S + R Q K +F V + L GR I +
Sbjct: 88 EFDDEGRYVECDFGDITVISLYCPSGSSSEE-RQQAKFRFMEVFLPHLQELKDSGREIVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAY 128
GD NIA ID + + + F R W + E G DV+R+ HPE +AY
Sbjct: 147 CGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTRVFDELG--LVDVYRTIHPETTGDAY 204
Query: 129 TCWPSNTGAEQFNYGTRID-HILCAG 153
T W + A N G RID HI AG
Sbjct: 205 TWWSNRGQAWANNVGWRIDYHIATAG 230
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRIITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|410940025|ref|ZP_11371846.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
gi|410784888|gb|EKR73858.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
Length = 254
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D VR K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQSNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA + D D + AKN E R W L + D FR HP+++E Y+
Sbjct: 147 GDVNIAHTSQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDKQE-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W +GA N G RID+
Sbjct: 202 WWTFRSGARAKNKGWRIDYFFVT 224
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ EGR + + F L NVY P R S R++++ +F LQ+ L + +
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LDASKPVI 140
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCW 131
V GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+ W
Sbjct: 141 VCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYSWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 180
+ N G RID+ L + + L + CH+ + C +++D
Sbjct: 201 SYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNDG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + + F L NVY P + E VR+ +++++ + + + L + + + + GDL
Sbjct: 88 EGRAITLEFESFYLVNVYTPNSQRE-LVRLPYRMEWENAF-REYVTQLDEKKPVIICGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPSNTG 136
N+A ID +A + F R L E S F D FR +P+ AYT W
Sbjct: 146 NVAHQEIDLKNAKSNIGNAGFSYEERGKLTELLASGFLDSFRELYPDLTGAYTWWSYMFK 205
Query: 137 AEQFNYGTRIDHILCA 152
A Q N G RID+ L +
Sbjct: 206 ARQNNAGWRIDYFLIS 221
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + + F L NVY P + D VR+ +++++ + + L + + + V GD+
Sbjct: 88 EGRVITVESEAFFLVNVYTPNS-QRDLVRLDYRMRWEDAF-RAYLLTLNRDKPVVVCGDM 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
N+A ID + + F R + L+E+G F D FR+ +PE+++AYT W
Sbjct: 146 NVAHREIDIKNPKSNIHNAGFTPEERQKMTDLLEAG--FIDTFRALYPEQKDAYTWWSYM 203
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHD 161
A + N G RID+ L + Q D
Sbjct: 204 RKARERNAGWRIDYFLVSDRLRGQVED 230
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + + F L NVY P + SE R+ +++++ + + E+L L + + +
Sbjct: 86 DQEGRVITLEFEDFYLVNVYTPNSQSE-LARLDYRMKWEDIFR---EYLKDLDNIKPVIL 141
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG D +N+ + L+ESG F D FR +PE+
Sbjct: 142 CGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKM-----TELLESG--FTDSFRYLYPEKE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+Y+ W A + N G RID+ + + + D Q H
Sbjct: 195 GSYSWWSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIH 234
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK++ + + D+EGR + + F + NVY P A + V + +L++
Sbjct: 169 GVALFSKEKPISVKYGLNDSTFDTEGRIITVEFPEFFVINVYVPNA-GQKLVTLPKRLEW 227
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGS 112
+ +K E L Q + + + GD+N+A ID + + F R+ + +
Sbjct: 228 NKLFKKHIE-ELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFLAAG 286
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
F D FRS +PE AYT W A N G R+D+ L +
Sbjct: 287 FIDTFRSLYPEIEGAYTFWSYFANARSKNIGWRLDYFLIS 326
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F L N+Y P + +E R++++L + +R+ L + + G
Sbjct: 86 DKEGRMITLEYDEFYLINLYAPNSQAE-LARLEYRLTWEEDF-RRYVQTLNSHKPVIFCG 143
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID R +AG +E R+ F S L+ESG F D FR +PE++++Y
Sbjct: 144 DLNVAHQEIDLKNPQANRRNAG---FTDEERLKF-SELLESG--FIDTFRYLYPEQKDSY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
+ W A N G RID+ C L K LQS T
Sbjct: 198 SWWSYRFNARVRNAGWRIDY-FCMSERL--KDSLQSAEIYT 235
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ +F L NVY P A + V + +L++ + K + L + + + + G
Sbjct: 181 DNEGRLITAEYLNFYLINVYVPNA-GQKLVTLPKRLKWNEIF-KTYVRNLDEKKPVIICG 238
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPSN 134
D+N+A ID + + F I R + + + F D FR+ +P++ +AYT W
Sbjct: 239 DMNVAHKEIDLRNPKTNIKNAGFTIEERDGMTDFLATGFVDTFRALYPDKTDAYTFWSYF 298
Query: 135 TGAEQFNYGTRIDHILCA 152
A N G R+D+ L +
Sbjct: 299 ANARSKNIGWRLDYFLVS 316
>gi|203284438|ref|YP_002222178.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
gi|201083881|gb|ACH93472.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
Length = 254
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ +SK E +K+ D EGRC+I + FIL N Y P + S R+ +KL+F
Sbjct: 68 GVAIYSKIEPIKLENMNIEIFDREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFL 126
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESG 110
L+ + G+ + V GD NIA ID + F + W + L
Sbjct: 127 MSLESIANSFVTSGKNLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---N 183
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR + E YT W T A + N G RID+ +
Sbjct: 184 RGYVDTFRMFNKEPGN-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSDP 223
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
DSEGR + + F L N+Y P + D R+ +++ + L+ EFL L + + +
Sbjct: 86 DSEGRAITLEFEEFYLVNIYTPNS-QRDLARLNYRVAWEDYLR---EFLQELDTKKPVIL 141
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWP 132
GD+N+A ID + + + F R + E F D FR +PE+ YT W
Sbjct: 142 CGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTELLNNGFVDTFRHLNPEKENVYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ L + D Q H+ + + C +L++
Sbjct: 202 YMNKVRERNIGWRIDYFLVSERLRESIIDTQVHSDIMGS-DHCPVLLE 248
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR--I 71
++D EGR + ++ F L Y P + E R+ F++Q+ Q +LL +R +
Sbjct: 84 ELDHEGRTITLEYKSFFLVTCYTPNSGHE-LKRLDFRMQWDPAFQS---YLLKLNKRKPV 139
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
+ GDLN+A + ID + F R + L++SG F D +R +P+++E Y
Sbjct: 140 IICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENFTTLLDSG--FIDTYRYFYPDKKEKY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W T A + N G RID+ L +
Sbjct: 198 SWWSYRTKAREVNSGWRIDYFLAS 221
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S + R+ ++
Sbjct: 64 GVITFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+ S+DE GR + + F L NVY P A D R+ ++L++ + R+
Sbjct: 80 GIEEDSEDE-------GRILTLEFDRFYLVNVYTPNA-KRDLSRLGYRLEW----EDRFR 127
Query: 63 FLLCQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDV 116
L + + + V GDLN+A ID +A + + F R L+ESG F D
Sbjct: 128 AYLLELDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESG--FIDT 185
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 153
FR HPER +A++ W + N G RID+ L +
Sbjct: 186 FRHLHPERDDAFSWWSFMPKVRERNIGWRIDYFLASA 222
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-----FFHVLQKRWEFLLCQGRR 70
D EGR + + F L Y P A + R+ ++ + F L+K L +
Sbjct: 152 DEEGRVITAEFDRFYLVTAYVPNA-GQGLARLPYREKEWDPDFLEYLRK-----LDATKP 205
Query: 71 IFVVGDLNIAPAAIDRCDAGPD-------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
+ V GDLN+A ID A PD F E R F +L S + D +R +P+
Sbjct: 206 VIVCGDLNVAHEEIDL--ARPDTNHKTAGFTDQE-RSGFTKLL--SSANLIDTYRHFYPD 260
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 176
RREAY+ W TGA N G R+D+ L + L D + + C V D
Sbjct: 261 RREAYSFWSYRTGARLINNGWRLDYFLVSQRILANVGDQE----IRCGVTGSD 309
>gi|91774073|ref|YP_566765.1| exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
gi|91713088|gb|ABE53015.1| Exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
Length = 251
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +I + F LFN+Y P + D R+++K+ F++ + + + G+ + +
Sbjct: 80 RFDKEGRTLIVEFEDFALFNIYFPNGKASDE-RLEYKMDFYNAFMEVADSMKDAGKNVII 138
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W + L G + D R PE YT
Sbjct: 139 CGDVNTAHKEIDLARPKQNERSSGFLPQEREWIDTFL---GHGYLDTLRMFEPESGN-YT 194
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W T A N G RID+ +
Sbjct: 195 WWDMKTRARDRNVGWRIDYFFAS 217
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|74316272|ref|YP_314012.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
gi|74055767|gb|AAZ96207.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
Length = 259
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L + D+EGR + D+G + ++Y P S + R Q K +F E L+ GR I
Sbjct: 85 LPEFDAEGRYIEADYGDLAVISLYQPSGSSSEE-RQQAKFRFLDAFFPHLEKLVKCGREI 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-E 126
+ GD NIA ID + + + F R W + E G + DV+RS +P E
Sbjct: 144 IICGDWNIAHQEIDLKNWKSNQKNSGFLPEERAWMTRLFDELG--WVDVYRSLYPAHTGE 201
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
AYT W + A N G RID+ + A P + K
Sbjct: 202 AYTWWSNRGQAWAKNVGWRIDYQI-ATPGIAAK 233
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ EGR + + F L NVY P R S R++++ +F LQ+ L + +
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LDASKPVI 140
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCW 131
+ GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+ W
Sbjct: 141 ICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYSWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 180
+ N G RID+ L + + L + CH+ + C +++D
Sbjct: 201 SYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 43/202 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR V D F L NVY P + E R+ ++ Q + + + L + + + + G
Sbjct: 87 DEEGRVVTADFKDFYLVNVYVPNSKPE-LARLDYR-QHWEDDFRDYVVKLNKEKPVIICG 144
Query: 76 DLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + P F E R F +L E+G F D FR K+P++ AYT
Sbjct: 145 DLNVAHTEIDLKNPKTNRRNPGFTDEE-REKFTELL-EAG--FTDTFRYKYPDKEGAYTW 200
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W A + N G RID+ L + N V + + IL D
Sbjct: 201 WSYRFNARKNNAGWRIDYFLVS-------------NDVKDKIEDAKILSD---------- 237
Query: 191 RWKGGMSTRLEGSDHAPVYMCL 212
+ GSDH PV + L
Sbjct: 238 ---------VYGSDHCPVVLEL 250
>gi|71905765|ref|YP_283352.1| AP endonuclease [Dechloromonas aromatica RCB]
gi|71845386|gb|AAZ44882.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Dechloromonas aromatica RCB]
Length = 259
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR + D G+ + ++Y P S R + K +F V + L +GR I +
Sbjct: 88 EFDAEGRYIRADFGNLSVISLYLPSGSSSPE-RQEAKFRFLDVFFPQMLALRAEGREIVL 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA-Y 128
GD NIA AID + + + F R W + E G + DV+R HPE +A Y
Sbjct: 147 CGDWNIAHQAIDLKNWKSNQKNSGFLPEERAWLSRLFEEQG--WVDVYRRLHPETTDACY 204
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W + A N G RID+
Sbjct: 205 TWWSNRGQAWAKNVGWRIDY 224
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 30/186 (16%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K+E L + D+EGR + ++G+F L NVY P + + R+ +++ +
Sbjct: 67 GTAVFTKEEPLTVKRGIGIEEHDNEGRVLTLEYGNFYLVNVYTPNS-KQGLERLDYRMVW 125
Query: 54 FHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFR 103
V +K +L L + + + + GDLN+A ID R +AG D +++
Sbjct: 126 EDVFRK---YLKELEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKI----- 177
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
S L+E+G F D +R +P++ Y+ W A N G RID+ L + + D +
Sbjct: 178 SELLEAG--FIDTYRYFYPDKEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAK 235
Query: 164 SHNFVT 169
H VT
Sbjct: 236 IHMEVT 241
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR V + F L NVY P +A S + R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
+L F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 176 ELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSHP 223
>gi|399573812|gb|AFP49245.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 237
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 95 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 152
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSF 113
GDLN+ +D C+ K + W F ++ +
Sbjct: 153 GDLNVIRDEMDTCNVREALRKEGMSVEEWMGMPSRRLFNHLVFDGRVTGERGEGREAPVL 212
Query: 114 FDVFRSKHPERREAYTCW 131
+D+ R HP R+ +TCW
Sbjct: 213 YDLTRIFHPTRQSMFTCW 230
>gi|154149895|ref|YP_001403513.1| exodeoxyribonuclease III Xth [Methanoregula boonei 6A8]
gi|153998447|gb|ABS54870.1| exodeoxyribonuclease III Xth [Methanoregula boonei 6A8]
Length = 269
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGP----RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 69
K D EGR +I ++ F L N+Y P + D+ DT + KL+F+ L + LL Q +
Sbjct: 90 KFDKEGRILIAEYDRFTLLNIYFPLGAGKPDTPDT--LSHKLEFYDTLLGFVKELLSQKK 147
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 128
+ + GD NIA D +A R L E F D FR KHP Y
Sbjct: 148 NVIICGDFNIAHKDKDLVNAKTTPLIVGIYPEEREKLNELERLGFVDAFRYKHPNLVR-Y 206
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAG 153
+ WP + + N G R+D+ +
Sbjct: 207 SRWPYQNNSRELNLGWRLDYFFVSA 231
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 45/204 (22%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRI 71
+ + EGR + ++ F L NVY P + D R+ ++L++ + ++ +L L + + +
Sbjct: 84 RTEPEGRILTLEYEDFYLVNVYTPNS-QRDLARLGYRLEWENRMRA---YLTDLDKKKPV 139
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
V GD+N+A ID +A + + F R + L+ SG F D FR +PER AY
Sbjct: 140 IVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGLLNSG--FIDSFRYFYPEREGAY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
T W + N G RID+ L +
Sbjct: 198 TWWSYMNKVRERNIGWRIDYFLVSKRL--------------------------------- 224
Query: 189 APRWKG-GMSTRLEGSDHAPVYMC 211
A R KG GM + GSDH PV++
Sbjct: 225 AGRLKGAGMYPEIMGSDHCPVFLA 248
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 44/203 (21%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--QGRRI 71
+ D EGR V + F L N Y PRA ++ R+ FKL+F + ++ FLL + + +
Sbjct: 84 EFDDEGRTVSLELKDFYLINAYFPRA-GDNLERLDFKLKFNNGIE---NFLLKLREVKPV 139
Query: 72 FVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
+ GD NIA +ID + P + R WF +L F D FR HP R+ Y+
Sbjct: 140 ILCGDFNIAHQSIDAAFSDPKIPGLTPQERAWFTHLL---SLGFIDTFRYLHPNVRK-YS 195
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W A + N G R+D+ + + +L+ + DIL D
Sbjct: 196 WWSYMGNAREKNLGLRLDYCIVS-------EELKD------SIKMADILTD--------- 233
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 ----------VQGSDHAPIILEL 246
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ FSK + L + D+EGR + + F L NVY P RA + R+ ++
Sbjct: 64 GVVTFSKTKPLNVSYGIGIEEHDTEGRVITCEFDKFYLVNVYTPNSQRALARLEYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 IEFRKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
S L+ +G F D FR +P + +AYT W + + N G RID+ LC+
Sbjct: 175 -SELLNAG--FIDTFRHFYPTKEKAYTWWSYMQQSRERNIGWRIDYFLCS 221
>gi|347538142|ref|YP_004845566.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania sp. NH8B]
gi|345641319|dbj|BAK75152.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania sp. NH8B]
Length = 258
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGR + D G + ++Y P S D R Q K F V L GR I +
Sbjct: 89 IDAEGRYLQLDFGELSVVSLYLPSGSSSDE-RQQVKFDFLDVFMPHLNELRAAGRDIVIC 147
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD NIA ID + + + F R W +L E G + DV+R +PE YT
Sbjct: 148 GDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMGELLGE--GGWHDVWRRLYPE-VPGYTW 204
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
W + A + G RID+ + P + ++ S + +++DY R
Sbjct: 205 WSNRGQAYAKDVGWRIDYHIVT-PSMMERARAASVYKDEKFSDHAPLIVDYDR 256
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ HF L NVY P + E R+ +++++ F K E + +
Sbjct: 86 DKEGRIITAEYPHFYLVNVYTPNSKRE-LERLDYRMKWEDDFRAFVKNLE----NHKSVI 140
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG D +N+ S L+++G F D FR +P
Sbjct: 141 ICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKM-----SALLDAG--FIDTFRYFYPTL 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W A + N G RID+ LC+
Sbjct: 194 TGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + F L N Y P + +E VR+ ++ Q+ + E++ L + + +
Sbjct: 88 DREGRVCTMEFEGFYLVNCYTPNSQNE-LVRLPYREQWDAAFR---EYVAGLAETKPVVF 143
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID R AG F+ E R F ++L+E+G F D FR+ HPE
Sbjct: 144 CGDLNVAHEEIDIARPKENRFSAG--FSDQE-RAGF-TLLLEAG--FTDTFRALHPEEPG 197
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
Y+ W GA N G RID+ + P + D H VT
Sbjct: 198 WYSWWSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIHPDVT 240
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQGRR 70
L + D EGR + ++ F L N Y P +S+D + R+ F+LQ+ L + +
Sbjct: 82 LAEFDQEGRVLTLEYEDFYLVNCYTP--NSQDKLKRLDFRLQWEAAFSDHLTNLATK-KP 138
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-SMLVESGGSFFDVFRSKHPERREAYT 129
+ + GDLN+A ID + P+ F I R +M F D FR + ++ AY+
Sbjct: 139 VILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTALLARGFTDTFRHIYLDKTGAYS 198
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
W A N G RID+ +C+ L Q D Q
Sbjct: 199 WWSYRFNARARNAGWRIDYFICSNALLPQVKDSQ 232
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L NVY P A E R+++++++ F K+ L + + +
Sbjct: 86 DKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKK----LKKHKPVV 140
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG D + + S L+ESG F D FR +P
Sbjct: 141 ICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFRHFYPTL 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W A + N G RID+ LC+
Sbjct: 194 EGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L NVY P A E R+++++++ F K+ L + + +
Sbjct: 86 DKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKK----LKKHKPVV 140
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG D + + S L+ESG F D FR +P
Sbjct: 141 ICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFRHFYPTL 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W A + N G RID+ LC+
Sbjct: 194 EGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ EGR + + F L NVY P R S R++++ +F + LQ+ L + +
Sbjct: 86 EPEGRTITLEFERFYLVNVYTPNTKRDLSRLPYRLEWEDRFRNYLQQ-----LDASKPVI 140
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCW 131
V GDLN+A ID +A ++ F R + + G F D FR +P+R + Y+ W
Sbjct: 141 VCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTDVYSWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 180
+ N G RID+ L + + L + CH+ + C +++D
Sbjct: 201 SYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + + + + G
Sbjct: 86 DDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAKPVILCG 143
Query: 76 DLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
D NIA ID + P + R WF L F D FR HP R+ Y+ W
Sbjct: 144 DFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-YSWWSY 199
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 193
A + N G R+D+ + + +L+ + DILID
Sbjct: 200 MGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------------- 233
Query: 194 GGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 ------IQGSDHAPIILEL 246
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK + L + D EGR + ++ F L NVY P + E R+++++++
Sbjct: 68 GVAIFSKKKPLSVAYDMGISHHDKEGRIITAEYNDFFLVNVYTPNSKRE-LERLEYRMEW 126
Query: 54 ---FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
F K E + + V GDLN+A ID R +AG F E
Sbjct: 127 EDDFRNFLKNLEVT----KPVIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--M 178
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
S+L++SG F D FR HP AY+ W A + N G RID+ LC+
Sbjct: 179 SVLLDSG--FTDTFRYFHPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 225
>gi|189345695|ref|YP_001942224.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
gi|189339842|gb|ACD89245.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
Length = 258
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D E R + HF L Y PR +S++ RI KL + L++ LL GR+
Sbjct: 84 EVPDFDIENRTGVLHTTHFTLIGTYVPRGESDEHYRI--KLDYLESLRRYICSLLDSGRQ 141
Query: 71 IFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
+ + GD+NIA ID + G + E R ++ + D+ RS HP+ +
Sbjct: 142 VILAGDMNIAHRDIDVHRSQNKPGAVGLRPEERA---AIDAQIASGLQDIMRSMHPDAAD 198
Query: 127 AYTCWPSNTGAEQFNYGTRID 147
+T WP A + N G RID
Sbjct: 199 LFTWWPYWKPARERNLGWRID 219
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L NVY P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFELFYLVNVYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
++F L+ L + + V GDLN+A ID R +AG D + +F
Sbjct: 124 VEFKKFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
S L+ +G F D FR +P + +AYT W A + G RID+ LC+ P + D
Sbjct: 175 -SELLNAG--FIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKMRLKD 230
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
DSEGR + + F L N Y P A VR+ ++L + +K + L + + + + G
Sbjct: 183 DSEGRVITLEFEEFFLVNSYVPNA-GRGLVRLDYRLTWDRDFRK-YLVGLKKKKSVILTG 240
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID + +AG F + E R +L E F D FR +PER AY
Sbjct: 241 DLNVAHNEIDLKNPKTNKKNAG--FTEEE-RQGLTDLLEEG---FVDTFRKLYPEREGAY 294
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
T W A N G R+D+ + +
Sbjct: 295 TFWTYMMNARAKNVGWRLDYFIVS 318
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + + + + G
Sbjct: 86 DDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAKPVILCG 143
Query: 76 DLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 133
D NIA ID + P + R WF L F D FR HP R+ Y+ W
Sbjct: 144 DFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-YSWWSY 199
Query: 134 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 193
A + N G R+D+ + + +L+ + DILID
Sbjct: 200 MGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------------- 233
Query: 194 GGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 ------IQGSDHAPIILEL 246
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAKP 138
Query: 71 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|255728113|ref|XP_002548982.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
gi|240133298|gb|EER32854.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
Length = 481
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQKR 60
G DF K +DSEGRCV+ + + ++F VY P A+S+ T + F+L F +L +R
Sbjct: 150 GYTDFDKQSGQFLDSEGRCVVVELADNTVVFGVYCP-ANSQRTYEGELFRLTFMKLLLER 208
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAID---------------RCDAGPDF------------ 93
L G+++ V+GD+NI ID R +G F
Sbjct: 209 CRNLKNMGKKVVVMGDININLDLIDNAEGIELGVKDNSIRRASSGHTFECMNYAECVKFK 268
Query: 94 AKNEFRIW-----FRSMLV-------------ESGGSFFDVFRSKHPERREAYTCWPSNT 135
+ ++ RI +RSM E +D R R + YT W + T
Sbjct: 269 SSSDARILLNKYVYRSMWQDLSIDGKEENKDDEQKQFLYDTTRFIQGRRMKMYTVWNTLT 328
Query: 136 GAEQFNYGTRIDHIL 150
+ + NYG+RID IL
Sbjct: 329 NSREINYGSRIDLIL 343
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F L NVY P + E R+++++++ F K E + +
Sbjct: 86 DKEGRIITAEFSDFYLVNVYTPNSKRE-LERLEYRMEWEDDFRTFLKNLE----SKKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG F E S L++SG F D +R +PE++
Sbjct: 141 VCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSALLDSG--FTDTYRHFYPEKQ 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G RID+ LC+
Sbjct: 195 GAYTWWSYMGKARANNTGWRIDYFLCS 221
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR + D F L N+Y P + R+++K+ F+ L +G+R+ +
Sbjct: 91 KFDKEGRFLRADFEDFTLMNIYFPNGKA-SLERLEYKMSFYEAFLDYANSLKAEGKRLVI 149
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A +D + + F R W L + D FR +PE Y+
Sbjct: 150 CGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFLA---AGYLDTFRMFNPEGGN-YS 205
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W TGA + N G R+D+ +
Sbjct: 206 WWSMRTGARKRNVGWRLDYFFVS 228
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRRAKP 138
Query: 71 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRI 71
++D EGR + ++ F L Y P A SE RI F+LQ+ + E+L L + + +
Sbjct: 84 ELDHEGRLITLEYPEFYLVTCYTPNAQSE-LKRIDFRLQWEAAFR---EYLHQLDEKKPV 139
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTC 130
+ GDLN+A ID + P+ K F R+ E + F D FR +PE Y+
Sbjct: 140 IICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNAFTELLNTGFTDTFRYLYPETTGVYSW 199
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W A + N G RID+ L +
Sbjct: 200 WSYRFHARENNAGWRIDYFLVS 221
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K + LK+ D EGR + ++ +F L NVY P A E+ R+ FK ++
Sbjct: 92 GTAVFTKHQPLKVMLGLDGNDQDPEGRAITLEYPNFYLVNVYAPAA-GEELQRLTFKEEW 150
Query: 54 FHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRS 104
QK F+ L + + + GDLNIA ID R AG A+ + +
Sbjct: 151 ---DQKLITFVDKLKATKPVIINGDLNIAHEPIDIYAPEEHRHAAGFTDAERQQM----T 203
Query: 105 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
L++SG F D++R+ HP+ YT W A + N+G R+D+ + +
Sbjct: 204 QLLDSG--FTDIYRATHPDEPNKYTWWSYRDHARRDNHGWRLDYFIIS 249
>gi|403216708|emb|CCK71204.1| hypothetical protein KNAG_0G01460 [Kazachstania naganishii CBS
8797]
Length = 526
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 66/243 (27%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
++ + + LK+DSEGRCV+ + + ++ +VY P + F+ F +L +R +
Sbjct: 144 VDTLEEADALKLDSEGRCVMIELACNTVVISVYCPANSTGTDEGELFRCHFLRMLFQRVK 203
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------------------------ 98
L G+R+ ++GDLN+ ID DA + +
Sbjct: 204 NLETMGKRVVLMGDLNVCRDLIDSADAIQELGLGSYKGGCELEDKCAVQAQNFIMDHSKP 263
Query: 99 -RIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTCWPSNTGAEQFNYGTRIDHI 149
R + +L +S GG D R + +R + YT W + N+G+RID I
Sbjct: 264 HRRFLNQLLCDSIIPELAQGGLLLDSTRFIQKRDRLKMYTVWNTQKNTRPMNFGSRIDFI 323
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L + N + + + +IL D ++GSDH PVY
Sbjct: 324 LVS-------------NKLQQSIRDSNILPD-------------------VQGSDHCPVY 351
Query: 210 MCL 212
L
Sbjct: 352 TDL 354
>gi|154175230|ref|YP_001407411.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
gi|112802161|gb|EAT99505.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
Length = 252
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G+ LFN+Y P +D R+ +K+ F+ + L+ QG + G
Sbjct: 86 DDEGRVLEHRFGNVALFNIYFPNGQKDDA-RLAYKMDFYAKFLAYIDALVAQGLDVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W ++ F D FR H + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVAHG---FIDTFRQAHGDVADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ F+K E L + D EGR + + F L NVY P + + R+ +++ +
Sbjct: 57 GVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNS-QQALFRLSYRMSW 115
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
V K++ L + + V GDLN+A ID R +AG F+ E R F +L
Sbjct: 116 -EVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFSELL 171
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 154
F D FR +P + +AYT W A + G RID+ LC+ P
Sbjct: 172 ---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 216
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 53/205 (25%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D+EGR + ++ F L VY P + T R+ +++++ F KR L + +
Sbjct: 86 DNEGRVLTAEYDKFYLVTVYTPNSQRGLT-RLDYRMKWEDDFREYLKR----LDTTKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG F E +ML++SG F D FR +P++
Sbjct: 141 ICGDLNVAHREIDIKNPEANRRNAG--FTDEEREK--MTMLIQSG--FTDSFRYLYPDKT 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
+AYT W A + N G RID+ L + + D
Sbjct: 195 DAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRD------------------------ 230
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYM 210
GM + + GSDH PV++
Sbjct: 231 --------AGMYSEIYGSDHCPVFL 247
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 40/204 (19%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAKP 138
Query: 71 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSNPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W A N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKARDKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL 212
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|421130875|ref|ZP_15591067.1| exodeoxyribonuclease III [Leptospira kirschneri str. 2008720114]
gi|410357978|gb|EKP05183.1| exodeoxyribonuclease III [Leptospira kirschneri str. 2008720114]
Length = 267
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D VR K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA D D + AKN E R W L + D FR HP+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDKQE-YS 214
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 215 WWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 248
>gi|398338895|ref|ZP_10523598.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Bim str.
1051]
gi|418676689|ref|ZP_13237967.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688052|ref|ZP_13249209.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695031|ref|ZP_13256057.1| exodeoxyribonuclease III [Leptospira kirschneri str. H1]
gi|418742572|ref|ZP_13298942.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|421090701|ref|ZP_15551492.1| exodeoxyribonuclease III [Leptospira kirschneri str. 200802841]
gi|400322589|gb|EJO70445.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957190|gb|EKO16105.1| exodeoxyribonuclease III [Leptospira kirschneri str. H1]
gi|410000583|gb|EKO51212.1| exodeoxyribonuclease III [Leptospira kirschneri str. 200802841]
gi|410737476|gb|EKQ82217.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410749947|gb|EKR06930.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 254
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D VR K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA D D + AKN E R W L + D FR HP+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDKQE-YS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 202 WWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|282163799|ref|YP_003356184.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
gi|282156113|dbj|BAI61201.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
Length = 255
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR +I D+G F+L ++Y P R+ +K+ F+ + L +GR++ V
Sbjct: 88 KYDIEGRTIIADYGKFVLLSIYFPNGKMSQE-RLDYKMGFYDAFLDYVDKLKAEGRKVVV 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A +D + K+ F R W E+ G F D FR + YT
Sbjct: 147 CGDVNTAHTELDIARPKENSKKSGFLPMEREWMDKF--EAHG-FIDTFRV-FEKAGGHYT 202
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W + T A + N G RID+ +
Sbjct: 203 YWDTFTKARERNVGWRIDYFYVS 225
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + + L VY P + ++ + R Q+ F ++K L + + +
Sbjct: 89 DQEGRVLCAEFSDLYLVTVYTPNSGNDLKRLSYRAQWDADFLSYIKK-----LEEKKPVV 143
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GDLN A ID P++ K+ + I LV +G + D FR HPE+ + Y
Sbjct: 144 ICGDLNAAHRDIDLARPKPNYNKSAGYTQQEIDGIDNLVAAG--YVDTFRYVHPEKVK-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
+ W GA + N G RID+ L + Q HD + HN
Sbjct: 201 SWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHN 238
>gi|385800322|ref|YP_005836726.1| exodeoxyribonuclease III Xth [Halanaerobium praevalens DSM 2228]
gi|309389686|gb|ADO77566.1| exodeoxyribonuclease III Xth [Halanaerobium praevalens DSM 2228]
Length = 258
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 88/218 (40%), Gaps = 43/218 (19%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+E L +S + + D EGR + + F L N+Y P S R+ +KL F+ +
Sbjct: 74 IEPLNVWSGIGIKRFDYEGRVIGAEFEDFYLLNIYFPNGRSSKK-RLNYKLDFYDAILDY 132
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDV 116
E L +G+ + + GD N A ID D + + F R W L E G + D
Sbjct: 133 SENLRKKGKEVVICGDYNTAHHPIDLHDPASNKKTSGFMPIEREWL-DKLEEKG--YLDS 189
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRID-HILCAGPCLHQKHDLQSHNFVTCHVNEC 175
+R +PE +E Y+ W T A N G RID H + AG + +
Sbjct: 190 YRYFNPE-KECYSWWSYRTKARSRNAGWRIDYHFVSAG--------------LESKLINA 234
Query: 176 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213
DIL T + GSDH PV + L
Sbjct: 235 DIL-------------------TEVMGSDHCPVTITLA 253
>gi|402546688|ref|ZP_10843563.1| exodeoxyribonuclease III [Campylobacter sp. FOBRC14]
gi|401017501|gb|EJP76262.1| exodeoxyribonuclease III [Campylobacter sp. FOBRC14]
Length = 252
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G+ LFN+Y P +D R+ +K+ F+ + L+ QG + G
Sbjct: 86 DDEGRVLEHRFGNVALFNIYFPNGQKDDA-RLAYKMDFYAKFLAYIDALVAQGLDVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W ++ F D FR H + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVAHG---FIDTFREVHGDAADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ +F L NVY P A + R+++++Q+ +R+ L + + + V G
Sbjct: 86 DTEGRVITLEYDNFYLVNVYTPNAQPK-LARLEYRMQWEDDF-RRYLNDLDEKKPVIVCG 143
Query: 76 DLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + P F+ E R F ++L +SG F D FR +P+ E YT
Sbjct: 144 DLNVAHNEIDLKNPKSNRKNPGFSDEE-RGKFTNLL-DSG--FIDSFRFFYPDATEMYTW 199
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
W A + N G RID+ + ++ + + H
Sbjct: 200 WSYRFNARENNAGWRIDYFCVSNKLKNELKNAEIH 234
>gi|421108297|ref|ZP_15568837.1| exodeoxyribonuclease III [Leptospira kirschneri str. H2]
gi|410006563|gb|EKO60314.1| exodeoxyribonuclease III [Leptospira kirschneri str. H2]
Length = 267
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D VR K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA D D + AKN E R W L + D FR HP+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDKQE-YS 214
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 215 WWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 248
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
+ EGR + + F L NVY P + D R+ F+L + ++ E+L L + + I +
Sbjct: 86 EDEGRILTLEFEDFYLINVYTPNS-QRDLARLHFRLNWEDRIR---EYLIQLNKLKPIVL 141
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWP 132
GDLN+A + ID +A + + F R + + S F D FR +P+ + YT W
Sbjct: 142 CGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDLLNSGFIDSFRYFYPDMTDKYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
+ N G RID+ + + H+ D Q H+ V
Sbjct: 202 YMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM 238
>gi|372487554|ref|YP_005027119.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
gi|359354107|gb|AEV25278.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
Length = 261
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D+EGR + D G+ + +VY P S R + K QF L +GR + +
Sbjct: 89 FDAEGRYIRADFGNLSVISVYVPSGSSSPE-RQEAKFQFMDEFAPVLAALQAEGREVVLC 147
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAYT 129
GD NIA ID + + + F R W + G + DV+R HPE EAYT
Sbjct: 148 GDWNIAHREIDLKNWKGNLKNSGFLPEERAWIGDLFEHKG--WVDVYRRLHPEATGEAYT 205
Query: 130 CWPSNTGAEQFNYGTRID-HILCAG 153
W + A N G RID HI G
Sbjct: 206 WWSNRGQARAKNVGWRIDYHIATPG 230
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR V+ + F L NVY P + + R+ +++ + + L + + + + G
Sbjct: 335 DGEGRVVMVEFDSFFLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEKSKPVILTG 393
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN A ID R AG NE R F + ++ G F D FR KHP+ Y
Sbjct: 394 DLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQKHPD-VVGY 447
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
T W G + N G R+D+ L + + HD
Sbjct: 448 TYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|167521904|ref|XP_001745290.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776248|gb|EDQ89868.1| predicted protein [Monosiga brevicollis MX1]
Length = 263
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + + VY P + +D R+ ++L ++V + L + + VVG
Sbjct: 96 DQEGRTITVELPDLFVIGVYVPNS-GQDLKRLDYRLNEWNVDFLAYIRELEASKPVLVVG 154
Query: 76 DLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A +D +AG K+ + R F L + F D FR +PE A+T
Sbjct: 155 DLNVAHLDLDIYNAG-HLVKSAGCTPQERTAFTEFLDQG---FTDTFRKLYPEHTGAFTY 210
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
W + TG Q + G R+D+ +C+ L L+
Sbjct: 211 WSARTGGRQDSKGLRLDYAVCSNALLEANSPLR 243
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF----FHVLQKRWEFLLCQGRRI 71
D EGR + + F L N Y P + E R+ ++++ F KR E Q + +
Sbjct: 205 DGEGRVITAEFSAFYLVNCYTPNS-GEGLKRLGYRVEKWDKDFSAYLKRLE----QHKPV 259
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
V GDLN+APA ID + F R F + L+ G F D FR+++PE A
Sbjct: 260 VVTGDLNVAPAEIDIHSPKTNLKSAGFTPQERASFAANLLGQG--FVDCFRTQYPE-AVA 316
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
YT W A N G R+DH L + HD
Sbjct: 317 YTYWGYRFNARGNNKGWRLDHFLVSQQLHSSLHD 350
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F + NVY P + E R+++++ + V + L + + + G
Sbjct: 76 DQEGRVITAEYPSFYVVNVYVPNS-GEGLKRLEYRVGSWDVAFADYLAGLGAKKPVILTG 134
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN A ID D + F R F + L++ G F D FR K+P+ YT W
Sbjct: 135 DLNCAHQEIDIHDPKRNLKSAGFTEEERKSFSAQLLQRG--FKDTFREKYPDV-VGYTYW 191
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
TGA N G R+D+ L + + HD+
Sbjct: 192 NYRTGARVRNRGWRLDYFLVSEALAERVHDI 222
>gi|384085723|ref|ZP_09996898.1| exodeoxyribonuclease III Xth [Acidithiobacillus thiooxidans ATCC
19377]
Length = 253
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 45/203 (22%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQKRWEFLLCQG 68
+ D EGR V+TD G F L+NVY P +D+ R+ FKL F+ H+ QK G
Sbjct: 87 RFDREGRVVVTDCGDFDLYNVYFPNG-KKDSERLAFKLDFYAAFLAHINQK-----AAAG 140
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 127
R + GD+N A ID + + F R+ + + + D FR HP+
Sbjct: 141 RPVIFCGDVNTAHQPIDLARPKENQRISGFLPEERACMDQWQQAGWVDSFRHLHPDEAR- 199
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
Y+ W T A + G R+D+ +HQ L+ R
Sbjct: 200 YSWWSQRTDARSRDIGWRLDYFW-----VHQS------------------LLPRLR---- 232
Query: 188 NAPRWKGGMSTRLEGSDHAPVYM 210
G++T + GSDH PV++
Sbjct: 233 -----AAGIATEVMGSDHCPVWL 250
>gi|289549078|ref|YP_003474066.1| exodeoxyribonuclease III Xth [Thermocrinis albus DSM 14484]
gi|289182695|gb|ADC89939.1| exodeoxyribonuclease III Xth [Thermocrinis albus DSM 14484]
Length = 261
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 4 LEDFSKDELLKI-DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
L+D KD + I D E R + G L NVY P D T + +KL F+ Q+ ++
Sbjct: 76 LQDVFKDTSMDILDKESRIIGGRLGDIWLINVYFPHGDLRGTPKFTYKLAFY---QQFYQ 132
Query: 63 FL---LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSF 113
FL +I ++GD+N+A ID D P ++ E R R +L E G F
Sbjct: 133 FLAENFSPEDKIILLGDMNVALEDIDVYD--PVLLRDTIGTMEEERSALRKIL-EWG--F 187
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
D FR +P + + +T W GA + G RID+IL P L D+
Sbjct: 188 VDTFRYLYPNKVQ-FTWWDYIGGAVWKDQGMRIDYILVTKPLLPSVRDV 235
>gi|401840624|gb|EJT43369.1| APN2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 520
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 116/295 (39%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D ++ L++DSEGRCV+ + ++ +VY P + F+++F VL +R + L
Sbjct: 151 DLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKGELFRIKFLKVLLRRVKNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA------------KNEFR------------- 99
G++I ++GD+N+ ID D +F+ + +R
Sbjct: 211 DKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDLEQRYRDEAIQFIVNPETP 270
Query: 100 -------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
I F S+L ++ G D R R YT W S + NYG+RID I
Sbjct: 271 HRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVWNSLKNSRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LA------------SSKLEQC-IKAGDILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEVPEIPQHST-----PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L + + ST P +R +R + ++ + K+E+ K+ K ++
Sbjct: 359 SDLDLRDQEVKSSTTEISIPKFEARNKFNLR--NRNVLEMFAKKELGKESKQQQY 411
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H E + R K G++F++C R+ G +SN E++CG+F+W
Sbjct: 474 PLCK-HGEESILRT-SKTSTNPGKKFWICKRSRGDSSNTESSCGFFQWV 520
>gi|218961468|ref|YP_001741243.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans]
gi|167730125|emb|CAO81037.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 256
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 45/205 (21%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR I ++ FI FN+Y P +D R+ +KL+F+ + E G+ I V
Sbjct: 89 EFDNEGRINIAEYTEFIFFNIYFPNGQKDDE-RLNYKLRFYDRCLEVMEEKRTSGKIILV 147
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPERREA 127
GD N A ID + + + F R W + E G + D FR K PE+
Sbjct: 148 GGDFNTAHHPIDLANPKENEKTSGFLPIERAWL-DKIAEMG--WIDTFRYFDKSPEQ--- 201
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
YT W T A N G R+D+ + H+
Sbjct: 202 YTWWSYRTKARPRNVGWRLDYFWVNKEGIE-------------HIK-------------- 234
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL 212
K G+ +EGSDH PV++ L
Sbjct: 235 -----KAGIRQDIEGSDHCPVFVEL 254
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + ++ F L NVY P + E R+++++Q F + L+ L + + +
Sbjct: 86 DKEGRVICAEYPDFYLINVYTPNSKRE-LERLEYRMQWEDDFLNFLKN-----LERKKPL 139
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F E + L+E+G F D FR +P+
Sbjct: 140 IICGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MTTLLENG--FIDTFRYFYPDL 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W A Q N G RID+ LC+
Sbjct: 194 EGAYSWWSYMGRARQNNTGWRIDYFLCS 221
>gi|203287972|ref|YP_002222987.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
gi|201085192|gb|ACH94766.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
Length = 254
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 17/161 (10%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ +SK E +K+ D EGRC+I + FIL N Y P + S R+ +KL+F
Sbjct: 68 GVAIYSKIEPIKLENMNIEIFDREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFL 126
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESG 110
+ + G+ + V GD NIA ID + F + W + L
Sbjct: 127 MSFESIANSFVTSGKNLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---N 183
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR + E YT W T A + N G RID+ +
Sbjct: 184 RGYVDTFRMFNKEPGN-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
Length = 254
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 54/225 (24%)
Query: 3 GLEDFSKDELL---------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ +SK+E L + D EGR + ++ F L N+Y P S R+ +KL F
Sbjct: 67 GVAIYSKEEPLDVWKGFGIERFDYEGRVIAAEYPEFYLLNIYFPNGKSSKE-RLNYKLDF 125
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLV 107
+ + E L +G+ + V GD N A +D + PD KN R W +
Sbjct: 126 YDATLEYAEELREEGKGVVVSGDYNTAHHPLDLKN--PDANKNTSGFLEIEREWLDKL-- 181
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 167
E+ G F D +R +P+ +E Y+ W T A + N G RID+ + +L+
Sbjct: 182 ENHG-FIDTYRYFYPD-KETYSWWSYRTRARERNAGWRIDYHFIS-------EELED--- 229
Query: 168 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
++N DIL D + GSDH PV + L
Sbjct: 230 ---NLNHSDILTD-------------------VMGSDHCPVTVDL 252
>gi|224827230|ref|ZP_03700324.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania ferrooxidans 2002]
gi|224600519|gb|EEG06708.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania ferrooxidans 2002]
Length = 258
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGR + D G + ++Y P S D R Q K F V L GR I +
Sbjct: 89 IDAEGRYLQLDFGELSVVSLYLPSGSSSDE-RQQVKFDFLDVFMPHLNELRAAGRDIVIC 147
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD NIA ID + + + F R W +L E G + DV+R +PE YT
Sbjct: 148 GDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMGELLGE--GGWHDVWRRLYPE-VPGYTW 204
Query: 131 WPSNTGAEQFNYGTRIDH 148
W + A + G RID+
Sbjct: 205 WSNRGQAYAKDVGWRIDY 222
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
L+ + EGR + + F L NVY A D R+ +L++ L+ E+LL R
Sbjct: 83 LESEDEGRIITLEFDSFYLVNVYTINA-KRDLSRLPERLEWEDALK---EYLLDLDRHKP 138
Query: 73 VV--GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 127
VV GDLN+A A +D +A + + F + R + L+ESG F D FR +PER +A
Sbjct: 139 VVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESG--FIDSFRYLYPERTDA 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
+T W N G RID+ + +
Sbjct: 197 FTWWSYMRDVRARNIGWRIDYFIVS 221
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + H + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFEHVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDR 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
++ DSEGR + ++ +F L NVY P A + + + +L++ K + L + + +
Sbjct: 166 VEFDSEGRLITAEYSNFYLVNVYVPNA-GQKLITLPKRLKWNEAF-KAYVKNLDEKKPVI 223
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCW 131
+ GD+N+A ID + + F RS + + F D FR+ +P++ AYT W
Sbjct: 224 ICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPDKEGAYTFW 283
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G R+D+ L +
Sbjct: 284 SYFANARSKNIGWRLDYFLVS 304
>gi|261416712|ref|YP_003250395.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791552|ref|YP_005822675.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373168|gb|ACX75913.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325662|gb|ADL24863.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 265
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
++ + D EGR + ++L +Y P D R+ +KL+F+ + + L G+
Sbjct: 84 DIEEFDEEGRVLQLVFPDWVLNCIYFPNGGQGDD-RLDYKLRFYDAFLENSKQWLADGKH 142
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
+ VGD N ID + + F R W VE+G F D FR+ HP+ R+
Sbjct: 143 VVTVGDYNTCHKEIDIARPKENENVSGFLPIERAWM-DKYVENG--FVDTFRTLHPDTRD 199
Query: 127 AYTCWPSNTGAEQFNYGTRIDH 148
AY+ W + GA + N G R+D+
Sbjct: 200 AYSWWSNRFGARERNVGWRLDY 221
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR V+ + F L NVY P + + R+ +++ + + L + + + + G
Sbjct: 335 DGEGRVVMVEFDSFXLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEKSKPVILTG 393
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN A ID R AG NE R F + ++ G F D FR KHP+ Y
Sbjct: 394 DLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQKHPD-VVGY 447
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
T W G + N G R+D+ L + + HD
Sbjct: 448 TYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + ++ +F NVY P A + V + +LQ+ K + L + + + +
Sbjct: 169 EFDDEGRLITAEYPNFYFLNVYVPNA-GQKLVTLPKRLQWNEAF-KSYVKQLDEKKPVII 226
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD+N+A ID + + F R + + F D FRS +P++ AYT W
Sbjct: 227 CGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGMTDFLAAGFVDTFRSLYPDKTGAYTFWS 286
Query: 133 SNTGAEQFNYGTRIDHILCA 152
A N G R+D+ L +
Sbjct: 287 YFANARSKNIGWRLDYFLVS 306
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 41/199 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + +F L NVY P + D R+ ++L++ + + + L Q + + + G
Sbjct: 86 EPEGRSLTLEFENFYLLNVYTPNS-KRDLARLPYRLEWEDEI-REYILELEQKKPVILCG 143
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN+A ID R + G +E R S+L E F D FR +PE+ AYT W
Sbjct: 144 DLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSEG---FVDSFRYLYPEQEGAYTWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
+ N G RID+ + + ++H L S + CDI+
Sbjct: 201 SYMAKVRERNIGWRIDYFIVSDKL--KEHILDSKIY-------CDIM------------- 238
Query: 192 WKGGMSTRLEGSDHAPVYM 210
GSDH P+ +
Sbjct: 239 ----------GSDHCPIML 247
>gi|167762826|ref|ZP_02434953.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
gi|167699166|gb|EDS15745.1| exodeoxyribonuclease III [Bacteroides stercoris ATCC 43183]
Length = 266
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
DSEGR V D+G + +VY P S D R FK+++ ++ LL ++ + G
Sbjct: 101 DSEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMEWLEHFRRYAVELLRTRPKLVLCG 159
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID D + + F R W L E F D FR HP+ RE YT W
Sbjct: 160 DYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDSRE-YTWW 215
Query: 132 PSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + + P L + L H + C ++++
Sbjct: 216 SYRFNSRAKNKGWRIDYCMASEAVRPMLKEARILND----AVHSDHCPMMLE 263
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-------FLLCQG 68
D EGR + + +F L NVY P + E +R+ +++ RWE L Q
Sbjct: 86 DQEGRLITLEFENFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYLITLNQS 136
Query: 69 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
+ + + GD+N+A ID R +AG D +++ + L+E+G F D FR
Sbjct: 137 KPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHI 189
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+P++ +AYT W A N G RID+ L +
Sbjct: 190 YPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K++ L++ D EGR + ++ + L VY P A D R+ ++L++
Sbjct: 65 GTAIFTKNKPLRVTYGMGIEVHDQEGRLITLEYEDYYLVTVYTPNA-KRDLTRLAYRLEW 123
Query: 54 ---FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLV 107
F KR L + + + GDLN+A AID + + F I R + L+
Sbjct: 124 GAAFTDYMKR----LDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDFTALL 179
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+G F D FR +PER +AY+ W A + N G RID+ + + CL
Sbjct: 180 NNG--FVDSFRHLYPERTDAYSWWSFLFNARERNIGWRIDYFVLS-KCL 225
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQKRWEFLLCQG 68
+ EGR + + + NVY P + D R++ +LQ + + L R +LC
Sbjct: 85 EDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLNKLNSRKAVILC-- 141
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 125
GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 142 ------GDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQE 193
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
EAYT W + N G RID+ + +
Sbjct: 194 EAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-----FFHVLQKRWEFLLCQG 68
K DSEGR V+ D F + NVY P + + R+ ++ + F +QK+ + +G
Sbjct: 310 KHDSEGRIVVVDFPSFTMCNVYVPNS-GQKLERLSYRTEEWDKDFLSFIQKKQK---DRG 365
Query: 69 RRIFVVGDLNIAPAAIDRC-DAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHP 122
+ +GDLN+A ++ D AK E R F + L F D FR HP
Sbjct: 366 VPVLWLGDLNVAHTNLEVWNDGAKHLAKQAGVTAEERASFEAQL---NAGFIDAFRRLHP 422
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ Y+ W G + N G R+D+ +C
Sbjct: 423 TAKGHYSYWSQRAGNREPNKGLRLDYFIC 451
>gi|424783043|ref|ZP_18209886.1| Exodeoxyribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959186|gb|EKU10797.1| Exodeoxyribonuclease III [Campylobacter showae CSUNSWCD]
Length = 256
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G+ +LFN+Y P +D R+ +K+ F+ + L+ QG+ + G
Sbjct: 86 DDEGRVLEHRFGNVVLFNIYFPNGQKDDA-RLAYKMDFYAKFLAYIQELVKQGKDVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W ++ F D FR + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVARG---FIDTFRQVRGDEADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
A N G RID+ + ++ D
Sbjct: 202 SYRFNARAKNVGWRIDYFFISSSLKNRLKD 231
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D+EGR + ++ F L N Y P R + + R++++ F + L K L + I
Sbjct: 89 DNEGRVITLEYEKFYLVNTYTPNSQRGLTRLSYRMEWEEDFRNYLLK-----LDSVKPII 143
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG F E +ML+ SG F D FR +P ++
Sbjct: 144 LCGDLNVAHKEIDIKNPSANRRNAG--FTDEEREK--MTMLLNSG--FIDTFRYFYPHKK 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
+AYT W A + N G RID+ + +
Sbjct: 198 DAYTWWSYMRNAREKNIGWRIDYFIVS 224
>gi|254457926|ref|ZP_05071353.1| exodeoxyribonuclease III [Sulfurimonas gotlandica GD1]
gi|373868999|ref|ZP_09605397.1| exodeoxyribonuclease III [Sulfurimonas gotlandica GD1]
gi|207085319|gb|EDZ62604.1| exodeoxyribonuclease III [Sulfurimonas gotlandica GD1]
gi|372471100|gb|EHP31304.1| exodeoxyribonuclease III [Sulfurimonas gotlandica GD1]
Length = 249
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 82/202 (40%), Gaps = 42/202 (20%)
Query: 13 LKIDS--EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
L ID+ EGR V T + +LFNVY P +D R+ +K++F+ E L G+
Sbjct: 78 LDIDTMGEGRIVETHYDDIVLFNVYFPNG-QKDEERLAYKMKFYDDFLDYCEKLRENGKS 136
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
I + GD+N A ID + + + F R W LV G + D FR + + +
Sbjct: 137 IIICGDVNTAHKEIDLKNPKANSKTSGFLPIEREWMDK-LVNHG--YIDTFRYVNGDEID 193
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
Y+ W +GA N G RID+ + D ++DY
Sbjct: 194 RYSWWSYRSGARLKNVGWRIDYFFISEDLAENLEDA--------------FILDY----- 234
Query: 187 GNAPRWKGGMSTRLEGSDHAPV 208
+EGSDH PV
Sbjct: 235 -------------IEGSDHCPV 243
>gi|374628249|ref|ZP_09700634.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
gi|373906362|gb|EHQ34466.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
Length = 256
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR +I D+ F LFN+Y P + R+ FKL F++ + E LL GR + +
Sbjct: 89 RFDTEGRIIIADYPDFSLFNIYFPNGKAS-AERLDFKLDFYNECLNQAEKLLADGRNVII 147
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W +L F D FR E Y+
Sbjct: 148 CGDVNTAHKEIDLARPKANENVSGFLPVERAWIDKLL---DAGFADSFRMFTKEGG-YYS 203
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ + A + N G RID+ + L
Sbjct: 204 WYDLKSRARERNVGWRIDYFFVSKKFL 230
>gi|297539760|ref|YP_003675529.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
gi|297259107|gb|ADI30952.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
Length = 262
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+EGL S D + IDSEGR + G+ + ++Y P S + R FK
Sbjct: 80 IEGLGG-SNDGVQDIDSEGRYLECQFGNLSVISLYLPSGSSGEE-RQAFKFSVMTRFMLH 137
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDV 116
+ L+ GR I + GD NIA D + + + F R W ++ E G + DV
Sbjct: 138 MQALIKSGREIIICGDWNIAHKEADLKNYKGNKKNSGFLPEERAWLTTLFDEVG--WVDV 195
Query: 117 FRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+R+ HP E YT W + A N G RID+ + A P + K
Sbjct: 196 YRTLHPNTTDECYTWWSNRGQAYAKNVGWRIDYQI-ATPAIAAK 238
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 7 FSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFF 54
F+KD+ L + D EGR + + F L NVY P + E T R+ ++ +F
Sbjct: 68 FTKDKPLDVKYGLGIEEHDKEGRVITLEFEDFYLVNVYTPNSQRELTRLDYRMTWEDEFR 127
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-F 113
+ L++ L + + + GDLN+A ID + + F R + E G+ F
Sbjct: 128 NYLKE-----LDSIKPVILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTELLGTGF 182
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
D FR +P++ +AYT W A N G RID+ + + + D Q H+
Sbjct: 183 IDTFRYFYPDKEDAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIHS 235
>gi|333994968|ref|YP_004527581.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
gi|333734315|gb|AEF80264.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
Length = 259
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ ++K E L + D EGR + + F L + Y P + R+ +KL+F
Sbjct: 72 GVAIYAKTEPLSVNFLKKAEFDDEGRVLQAEFKDFTLISAYFPNSQDRGK-RLDYKLRFC 130
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC-------DAGPDFAKNEFRIWFRSMLV 107
+ K + + QGR + GD NIA ID +AG E R W M
Sbjct: 131 DAIMKLCKKFVTQGRHFVLCGDYNIAHTPIDLAHPKANEENAG---YLPEERAW---MDA 184
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+ F D FR +P +++ YT W A + N G RID+ C P
Sbjct: 185 YTKAGFVDTFRHFYPGKKDQYTWWSYRMNARERNVGWRIDY-HCVDPAF 232
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D+EGR + ++ F L N Y P R + + R++++ F + L K L + I
Sbjct: 89 DNEGRVITLEYEKFYLVNTYTPNSQRGLTRLSYRMEWEEDFRNYLLK-----LDSVKPII 143
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG F E +ML+ SG F D FR +P ++
Sbjct: 144 LCGDLNVAHKEIDIKNPSANRRNAG--FTDEEREK--MTMLLNSG--FIDTFRYFYPHKK 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
+AYT W A + N G RID+ + +
Sbjct: 198 DAYTWWSYMRNAREKNIGWRIDYFIVS 224
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 29/151 (19%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL--LCQG 68
D+EGR + ++ +F L NVY P A +R+ ++L+ WE FL L Q
Sbjct: 137 DTEGRVITCEYPNFYLVNVYTPNAQ-RGLLRLPYRLE--------WERSFRGFLQNLMQK 187
Query: 69 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
+ + V GDLN+A ID R +AG F+ E R FR +L D FR +
Sbjct: 188 KAVVVCGDLNVAHNEIDLTNPQSNRYNAG--FSDPE-RDAFRQLL---NLGLIDTFRHFY 241
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
P + E+YT W A N G RID+ L +
Sbjct: 242 PTKAESYTWWSYINQARAKNIGWRIDYFLTS 272
>gi|374814956|ref|ZP_09718693.1| exodeoxyribonuclease III [Treponema primitia ZAS-1]
Length = 258
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDT-VRIQFKLQF 53
G +SK E L + D EGR + D F+L + Y P +S+D R+ +KL F
Sbjct: 72 GTAIYSKTEPLDVKPLGVPEFDDEGRVLQADFKDFVLISAYFP--NSQDAGARLDYKLGF 129
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC----DAGPDFAKNEFRIWFRSMLVES 109
+ + L+ GR + + GD NIA ID + G E R W + +
Sbjct: 130 CAAILECCNKLVAAGRHLVLCGDYNIAHTPIDLARPKENEGNAGYLPEERAWMDTF---T 186
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
+ D FR KHP Y+ W A + N G RID+
Sbjct: 187 SAGYADTFRDKHPGETGHYSWWSYRMSARERNVGWRIDY 225
>gi|82701358|ref|YP_410924.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82409423|gb|ABB73532.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 259
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRR 70
+ID+EGR + D G + ++Y P + + V+ F QFF +L+K L G
Sbjct: 87 EIDAEGRYLRVDFGQLSIISIYFPSGSAGEHRQAVKYFFMEQFFPMLEK----LAACGSE 142
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
I + GD NIA ID + + + F R W + E G F DVFR +PE +
Sbjct: 143 IILCGDWNIAHKEIDLRNWRSNQKNSGFLPQERAWLTDVFQELG--FVDVFRRINPE-PD 199
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
YT W + A N G RID+ + A P + K + S + ++IDY
Sbjct: 200 QYTWWSNRGQAWAKNVGWRIDYQI-ATPGIAGKANAVSIYKTERFSDHSPLIIDY 253
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + F L NVY P D R+ ++L++ + + L Q + + + G
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNT-KRDLSRLPYRLEWEDRFRSYLQQLDAQ-KPVIICG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID +A ++ F R S L+ +G F D FR +P+R + Y+ W
Sbjct: 144 DLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAG--FIDTFRYFYPDRTDVYSWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 180
+ N G RID+ L + + L + CH+ + C +++D
Sbjct: 202 YMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 43/202 (21%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRI 71
+ + EGR + ++ F L NVY P + D R+ ++L++ ++ +L L + + +
Sbjct: 84 RTEPEGRILTLEYEDFYLVNVYTPNS-QRDLARLGYRLEWEDRMRA---YLTELDKKKPV 139
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
V GD+N+A ID +A + + F R + L+ SG F D FR +PER AY
Sbjct: 140 IVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNSG--FIDSFRYFYPEREGAY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
T W + N G RID+ L + + D
Sbjct: 198 TWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKD--------------------------- 230
Query: 189 APRWKGGMSTRLEGSDHAPVYM 210
GM + GSDH PV++
Sbjct: 231 -----AGMYPEIMGSDHCPVFL 247
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
++EGR + + F L N Y P + D R+ ++L++ + L Q + + G
Sbjct: 72 EAEGRVLTLEFEKFFLVNCYTPNS-QRDLARLSYRLKWEDEMLAHLTELDAQ-KPVIYCG 129
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID C+ ++ + F R + L++SG F D FR HP + AYT W
Sbjct: 130 DLNVAHEEIDICNVKSNYGNSGFTKEERAKMTRLLDSG--FIDTFRYLHPNQEGAYTWWS 187
Query: 133 SNTGAEQFNYGTRIDHILCA 152
N G RID++L +
Sbjct: 188 YMRDVRARNIGWRIDYLLIS 207
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
DSEGR + + F + NVY P A + V + +L++ + +K E L Q + + +
Sbjct: 161 FDSEGRIIAAEFPEFFMVNVYVPNA-GQKLVTLPKRLEWNKIFKKYIE-ELDQKKPVIIC 218
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWPS 133
GD+N+A ID + + F R + + F D FR +P++ AYT W
Sbjct: 219 GDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLAAGFIDTFRLLYPDKEGAYTFWSY 278
Query: 134 NTGAEQFNYGTRIDHILCA 152
A + G R+D+ L +
Sbjct: 279 FANARNKDIGWRLDYFLAS 297
>gi|255719916|ref|XP_002556238.1| KLTH0H08250p [Lachancea thermotolerans]
gi|238942204|emb|CAR30376.1| KLTH0H08250p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 70/243 (28%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 61
G+ED + + L IDSEGRCV+ + + ++ + Y P S + +++F VL +R
Sbjct: 143 GIED--EADALSIDSEGRCVMVELKCNMVVISTYCPANSSLTDEGEEMRIRFLKVLFRRI 200
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--------------------FAKNEF--- 98
L G+R+ ++GD+N+ ID +A + F K+
Sbjct: 201 RNLQALGKRVVLMGDINVCRDLIDHAEALKETHIFVTDLTKGTQVEQTYSAFVKDFIFAP 260
Query: 99 ----RIWFRSMLVES-------GGSFFDVFRS-KHPERREAYTCWPSNTGAEQFNYGTRI 146
R ML +S GS D R + +R + YT W + + NYG+RI
Sbjct: 261 SRPARRLLNEMLADSVLKPFAESGSLIDTTRYIQGRDRMKMYTVWNTLRNSRPVNYGSRI 320
Query: 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 206
D+IL K+DL+ K + ++ GSDH
Sbjct: 321 DYILATAGL---KNDLK-----------------------------KADIWPKIMGSDHC 348
Query: 207 PVY 209
PV+
Sbjct: 349 PVF 351
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 464 PLCKGHKEPCVARVVK-KPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
PLCK H E + R K K P G++F+ CAR G +N EA+C +F+W
Sbjct: 466 PLCK-HNENAILRTSKTKNNP--GKKFWACARPTGDENNKEASCSFFQW 511
>gi|222823091|ref|YP_002574664.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
gi|222538312|gb|ACM63413.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
Length = 252
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F++ + LL +G+ I + G
Sbjct: 86 DDEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYNDFLVYLDKLLKEGKEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L E G F D FR + + +E Y+ W
Sbjct: 145 DVNTAHREIDLTHPKANEKTSGFLPIERAWIDDLL-ELG--FVDTFRYVNGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGRC+ ++ F + NVY P A + V + +L + +K + L Q + + + G
Sbjct: 856 DTEGRCITVEYETFFVVNVYVPHA-GRNLVTLPKRLDWNEQFEKFIKNLDSQ-KPVIICG 913
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTCW--- 131
D+N+A ID + + F + R M G + D++R +PE+ +AYT W
Sbjct: 914 DMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYM 973
Query: 132 ----PSNTG 136
P+N G
Sbjct: 974 RNARPNNVG 982
>gi|358639330|dbj|BAL26627.1| exodeoxyribonuclease III [Azoarcus sp. KH32C]
Length = 263
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ ID+EGR + D G + ++Y P S + R+Q K F L GR +
Sbjct: 86 IADIDAEGRFLQLDFGPLSIVSLYLPSGSSSEE-RLQIKFGFMERFLPHMAALRASGREV 144
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
V GD NIA +D + + + F R W ++ E G + DV+R HP+ +A
Sbjct: 145 IVCGDWNIAHKEVDLKNWKSNQKNSGFLPEERAWLTRVIDEQG--WVDVYRRLHPDTTDA 202
Query: 128 -YTCWPSNTGAEQFNYGTRIDHILCAGPCLH 157
YT W + A N G R+D+ + H
Sbjct: 203 CYTWWSNRGQAWAKNVGWRLDYQIATPGVAH 233
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 96/231 (41%), Gaps = 66/231 (28%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-- 51
G FSK++ L I D EGR + + F L NVY P + + RI +++
Sbjct: 65 GTAVFSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS-QQKLARIDYRMAW 123
Query: 52 --QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIW 101
F H L + L + + + V GDLN+A ID R +AG D + +F
Sbjct: 124 ENDFRHYLNE-----LNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF--- 175
Query: 102 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
L++SG F D +R +P + AY+ W A N G RID+ L + D
Sbjct: 176 --GELLKSG--FIDTYRYFYPGKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KD 224
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
+ D L+D + T++EGSDH PV + +
Sbjct: 225 FE------------DRLVD-------------ANIHTQIEGSDHCPVELII 250
>gi|315637812|ref|ZP_07893002.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
gi|315482053|gb|EFU72667.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
Length = 252
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + +LFN+Y P +D +R+ K++F+ LL +G+ + + G
Sbjct: 86 DDEGRVLEHRFNNIVLFNIYFPNG-QKDEIRLNHKMKFYADFLVYLNKLLKEGKEVIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLALG---FIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ +SK E + I D EGR + ++ HF L NVY P A ++ V + +L++
Sbjct: 205 GMALYSKKEPIDISMGLDEEFDDEGRLITAEYEHFYLVNVYVPNAGNK-LVTLPKRLKWN 263
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSF 113
+K + L + + + + GD+N+A ID + + F R + + F
Sbjct: 264 EAFKKHIQDL-DKKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLQAGF 322
Query: 114 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
D FR +P++ +AYT W A N G R+D+ + +
Sbjct: 323 VDTFRLLYPDKTDAYTFWAYFNNARSKNIGWRLDYYIVS 361
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L VY P + E+ R+++++++ F K+ E + + +
Sbjct: 86 DKEGRVITLEYDDFYLVTVYTPNS-KEELARLEYRMEWEDAFRAYLKKLE----KNKPVI 140
Query: 73 VVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
V GDLN+A ID + P F+ E R F +L F D +R +P++ A
Sbjct: 141 VCGDLNVAHKEIDLKNPKTNRKNPGFSDEE-RAKFSELL---ASGFIDTYRYFYPDKEGA 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
Y+ W A N G RID+ + + + + HN
Sbjct: 197 YSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHN 235
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G+ F+K E L + D EGR + + F L N+Y P +A S R+ ++
Sbjct: 64 GVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNIYTPNSQQALSRLNYRMSWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
++F L+ L + + V GDLN+A ID R +AG F+ E R F
Sbjct: 124 VEFRRFLKA-----LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFN 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+L F D FR +P + +AYT W A N G RID+ LC+
Sbjct: 176 ELL---NTGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 85/226 (37%), Gaps = 54/226 (23%)
Query: 3 GLEDFSKDELLKI----------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 52
G+ +S+ E LK+ + EGR + + F L N Y P A E R+ FKL
Sbjct: 304 GVAIYSRLEPLKVLYGMGQEEKYEQEGRVLTMEFADFFLVNAYLPNAQPE-LARLPFKLD 362
Query: 53 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLV 107
F Q+ E L Q + + V GDLN+A ID P F+ E R W L
Sbjct: 363 FCRHFQQFCENLATQ-KNVVVCGDLNVAHREIDLARPQENQQSPGFSPAE-RAWLDGFL- 419
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 167
F D FR + E YT W GA Q N G RID+ C+
Sbjct: 420 --ANGFTDTFRLFNQEGGN-YTWWSYRGGARQRNVGWRIDYF-----CIDSA-------- 463
Query: 168 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213
G + G+ + GSDH PV + LG
Sbjct: 464 -------------------GRRRVREAGIRPEIMGSDHCPVTLTLG 490
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D EGR + + + L NVY P + E R+ ++LQ+ K + L + + V
Sbjct: 84 KHDKEGRVITLEFCDYYLVNVYTPNSQRE-LARLDYRLQWEDAF-KNYLVNLDSEKPVIV 141
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWP 132
GDLN+A ID + + F R+ L E F D FR +P+ AYT W
Sbjct: 142 CGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTELLNAGFIDTFRYFYPDTEGAYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
T A + N G RID+ L + QK D N++T DI+
Sbjct: 202 YITKARERNAGWRIDYFLAS-----QKLD----NWLTDAEIHADIM-------------- 238
Query: 193 KGGMSTRLEGSDHAPVYMCLG 213
GSDH PV + L
Sbjct: 239 ---------GSDHCPVALKLA 250
>gi|386859763|ref|YP_006272469.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
gi|384934644|gb|AFI31317.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
Length = 254
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 17/161 (10%)
Query: 3 GLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 54
G+ +SK E +K+ D EGRC+I + FIL N Y P + S R+ +KL+F
Sbjct: 68 GVAIYSKIEPIKLENMNIEIFDREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFL 126
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESG 110
L+ + + + V GD NIA ID + F + W + L
Sbjct: 127 MSLESIANAFVTSEKNLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---N 183
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR + E YT W T A + N G RID+ +
Sbjct: 184 RGYVDTFRMFNKEPGN-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|317151124|ref|XP_001824462.2| DNA lyase [Aspergillus oryzae RIB40]
Length = 556
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 327 TITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLN 382
T+ + S P V R++ +++ Q +LK FF + VS + I++T
Sbjct: 364 TVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-T 418
Query: 383 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 442
+ V S +P S S D + +H V ++ S+ F+ +
Sbjct: 419 PDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQ 474
Query: 443 ERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 497
V + +W ++ + +P+C+GH+EPC++ KKPG GR F++C R G
Sbjct: 475 NSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLG 532
Query: 498 PASNPEAN----CGYFKWA 512
P+ N E C F WA
Sbjct: 533 PSGNKEKGTQWRCATFIWA 551
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 137 LDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 194
Query: 75 GDLNIAPAAIDRCDA 89
GDLNI+ ID A
Sbjct: 195 GDLNISRGEIDAAHA 209
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
++ DSEGR + ++ +F L NVY P A + + + +L++ K + L + + +
Sbjct: 189 VEFDSEGRLITAEYSNFYLINVYVPNA-GQKLITLPKRLKWNEAF-KAYVKNLDEKKPVI 246
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCW 131
+ GD+N+A ID + + F RS + + F D FR+ +P + AYT W
Sbjct: 247 ICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPNKEGAYTFW 306
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G R+D+ L +
Sbjct: 307 SYFANARSKNIGWRLDYFLVS 327
>gi|284035454|ref|YP_003385384.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
gi|283814747|gb|ADB36585.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
Length = 254
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + TD G L N Y P + + V+++F F+ +Q+ L + ++
Sbjct: 89 DCEGRILRTDFGDLTLLNCYFPSGTTGEVRQGVKMEFLRDFYQFVQE----LRKERPKVI 144
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
VVGD NIA AID D P KN E R W S G D FR KHP
Sbjct: 145 VVGDYNIAHNAIDIHD--PVRNKNTTGFLPEERAWMDSWF---GSGMTDGFRYKHPT-DV 198
Query: 127 AYTCWPSNTGAEQFNYGTRIDH 148
AY+ W GA N G RID+
Sbjct: 199 AYSWWSYRAGARTNNKGWRIDY 220
>gi|119192056|ref|XP_001246634.1| hypothetical protein CIMG_00405 [Coccidioides immitis RS]
Length = 551
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 5 EDFSKDELLK--IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
E S EL +DSEGRCVI + F+L VY P + D R F+L F + L R
Sbjct: 125 EQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIR 182
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESG 110
L+ G+R+ V GDLNI+ ID A +F + RI F + LVE G
Sbjct: 183 NLISLGKRVVVAGDLNISRDEIDSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGG 239
>gi|374287729|ref|YP_005034814.1| putative exodeoxyribonuclease [Bacteriovorax marinus SJ]
gi|301166270|emb|CBW25845.1| putative exodeoxyribonuclease [Bacteriovorax marinus SJ]
Length = 256
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+F D+EGR +IT+ +F LFN Y P D R+ +K+ + ++++ +
Sbjct: 85 GIEEF--------DNEGRTIITEFDNFFLFNCYFPNG-QRDHARVPYKMSYCKAIEEKAQ 135
Query: 63 FLLCQGRR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRS 119
L Q ++ I + GD N A ID + + F R + E G + D+FR
Sbjct: 136 ELHQQFKKDIIITGDYNTAHHPIDLANPKTNTKSTGFLPLEREWMDHFEEIG-YVDIFRH 194
Query: 120 KHPERREAYTCWPSNTGAEQFNYGTRIDHI 149
PE YT W + + N G RID+
Sbjct: 195 FTPEENGHYTWWTYRSNCRERNIGWRIDYF 224
>gi|154286664|ref|XP_001544127.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
gi|150407768|gb|EDN03309.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
Length = 616
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRC+I + F+L VY P + D R F+ F +VL R L G+R+ V+
Sbjct: 107 LDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLATMGKRVIVM 164
Query: 75 GDLNIAPAAIDRCDA 89
GDLNI+ + ID A
Sbjct: 165 GDLNISGSQIDSARA 179
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 338 PFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 396
P + R+ A ++ GQ +LK FF ++ T S + N + +S + E
Sbjct: 339 PKRLKRSESSATTTKAKGQKTLKGFFGPKTTPC------TTVASADDENDHSKSSATTEG 392
Query: 397 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS----HDQDEKKGKRFLDKERNNVALLEW 452
+ K P + C + +G S + +D+D R D N + W
Sbjct: 393 GSPQKGTAIKPPCSSGGCCDSQENGCQQSQTAGPPAYDKDNDNSGRVHDPIANKES---W 449
Query: 453 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGY 508
++ + P C GH EPC++ V KK G GR F++C+R GP + + C
Sbjct: 450 SKL--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDT 507
Query: 509 FKWA 512
F W+
Sbjct: 508 FIWS 511
>gi|333997681|ref|YP_004530293.1| exodeoxyribonuclease III [Treponema primitia ZAS-2]
gi|333741451|gb|AEF86941.1| exodeoxyribonuclease III [Treponema primitia ZAS-2]
Length = 260
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDT-VRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ D+EGR + D F+L + Y P +S+D R+ +KL F + + L+ GR +
Sbjct: 91 EFDAEGRVLQADFKDFVLISAYFP--NSQDAGARLGYKLDFCAAMLECCNKLVSAGRHLV 148
Query: 73 VVGDLNIAPAAIDRC----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD NIA ID + G E R W + + + D FRS HP Y
Sbjct: 149 LCGDYNIAHTPIDLARPKENEGNAGYLPEERAWMDTFI---AAGYVDTFRSFHPGETGCY 205
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
+ W A + N G R+D+
Sbjct: 206 SWWSYRMSARERNVGWRLDY 225
>gi|57505734|ref|ZP_00371660.1| exodeoxyribonuclease III [Campylobacter upsaliensis RM3195]
gi|57016007|gb|EAL52795.1| exodeoxyribonuclease III [Campylobacter upsaliensis RM3195]
Length = 252
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + + +LFN+Y P +D R+ K++F+ LL +G+ + + G
Sbjct: 86 DDEGRVLEHNFNNIVLFNIYFPNG-QKDEERLNHKMKFYADFLAYLNKLLKEGKEVIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLALG---FIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + + F L VY P A D R++++L++ ++ + L + + + V G
Sbjct: 86 EPEGRMITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERFRRYLQELDAR-KPVIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A +D +A + + F R + L+++G F D FR ++P+R +AYT W
Sbjct: 144 DLNVAHQEMDLKNAKSNHGNSGFTPEERDKMTRLLDAG--FTDTFRHRYPDRTDAYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAG 153
+ N G RID+ L +
Sbjct: 202 FMPKVRERNIGWRIDYFLVSA 222
>gi|148643539|ref|YP_001274052.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222444963|ref|ZP_03607478.1| hypothetical protein METSMIALI_00579 [Methanobrevibacter smithii
DSM 2375]
gi|261350463|ref|ZP_05975880.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
gi|148552556|gb|ABQ87684.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222434528|gb|EEE41693.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288861246|gb|EFC93544.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 257
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR + ++ F LFN+Y P + + R+ +K+ F + L E L QG+ + +
Sbjct: 91 LDREGRVLRLEYSDFTLFNIYFPNS-GMNAKRLDYKIDFCNALLDLLEDLKNQGQNLIIT 149
Query: 75 GDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID C+ + E R W +L F D FR + + +T
Sbjct: 150 GDVNIAHNPIDVYNPANCEGKSGYLIEE-REWLDDLL---ASGFVDTFR-MFDDSGDNFT 204
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W T A N G R+D+
Sbjct: 205 WWSYRTRARDRNAGWRLDYFFV 226
>gi|302877288|ref|YP_003845852.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580077|gb|ADL54088.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 254
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR + D + + ++Y P S + R K F L GR + V
Sbjct: 87 QFDAEGRYLCADFADYSVVSLYLPSGSSGEE-RQGVKFSFMEAFLPHLRELRASGREVIV 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W + E G F DVFR HPE EAYT
Sbjct: 146 CGDWNIAHKEIDLKNWRGNKKNSGFLPEERAWLTQLFDEVG--FVDVFRRVHPE-LEAYT 202
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A N G RID+
Sbjct: 203 WWSNRGQAWAKNVGWRIDY 221
>gi|344305039|gb|EGW35271.1| AP endonuclease [Spathaspora passalidarum NRRL Y-27907]
Length = 484
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 45/194 (23%)
Query: 4 LEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR-W 61
++D + L +DSEGRCV+ + + ++F++Y P S +F+L+F VL +R +
Sbjct: 156 VDDLDSQQGLNLDSEGRCVVIEFTNNLVVFSLYCPANSSGTEEGEEFRLKFMKVLFERCY 215
Query: 62 EFLLCQGRRIFVVGDLNIAPAAIDRCDA------------GP--------------DFAK 95
G+ + ++GD+NI+ ID P DF K
Sbjct: 216 NLKFKLGKEVLIMGDINISTDLIDHAQTIEDMVLNRLGKNSPNGNNFETINYEQCCDFKK 275
Query: 96 --------NEFRI--WFRSMLVESGGS-------FFDVFRSKHPERREAYTCWPSNTGAE 138
NE+ I + + ++S S +D R R + YT W + T +
Sbjct: 276 STPARHLLNEYVIPGLWHDLSLQSSPSDSHRKQFLYDTTRFLQGRRMKMYTVWNTLTNSR 335
Query: 139 QFNYGTRIDHILCA 152
N+G+RID IL +
Sbjct: 336 AVNFGSRIDLILTS 349
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + ++ + + N Y P A R+ +KL F ++ E L + + + +
Sbjct: 85 EFDEEGRVITLEYERYYVVNAYFPNA-GRGLPRLGYKLAFDQAIENYLEGLRAR-KGVVL 142
Query: 74 VGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+GDLN+A ID + F E R W + L + + D FR HP+ AY
Sbjct: 143 MGDLNVAHREIDIARPKQNQKSAGFTPEE-RAWIDAFLKKG---WIDTFRHLHPDATGAY 198
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD--LQSHNFVTCHVNECDIL 178
T W A N G RID+IL + L D + + + HV +L
Sbjct: 199 TWWTYRFNARAKNIGWRIDYILISEDLLPHLMDAYIYYDAYASDHVPVVAVL 250
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 43/203 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D+EGR + ++ F L NVY P + + R+ ++ + FH K E + + +
Sbjct: 89 DTEGRVICAEYDTFYLVNVYVPNS-GQKLERLDYRKGWDTDFHNYLKNIE----KTKSVI 143
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNE--FRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
+ GDLN+A AID + ++ K +I M F D FR HPE AYT
Sbjct: 144 LCGDLNVAHQAIDLKNDKANYNKTAGYTQIEIDGMDNFLNEGFVDTFRHFHPETV-AYTY 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W + + N G RID+ L + P + + VN+ +IL +Y
Sbjct: 203 WSYRFKSRERNTGWRIDYFLVSNPLVEK-------------VNKVEILSEYF-------- 241
Query: 191 RWKGGMSTRLEGSDHAPVYMCLG 213
GSDH P+ + +G
Sbjct: 242 -----------GSDHCPIKLEIG 253
>gi|57237312|ref|YP_178325.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|148926400|ref|ZP_01810084.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
gi|57166116|gb|AAW34895.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|145844792|gb|EDK21897.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
Length = 259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK+QF+ + LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 208
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 209 SYRMKARERNVGWRIDYFFIS 229
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 21/158 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRR 70
+ D+EGR + + F L NVY P A T RI F++Q+ F V R L + +
Sbjct: 84 EFDTEGRVITVEFEKFTLINVYTPNAQRGLT-RIDFRMQWEDAFRVYLLR----LQESKP 138
Query: 71 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
+ V GDLN+A ID R +AG F+ E + L++SG + D FR +PE
Sbjct: 139 VVVCGDLNVAHNEIDLKNYKTNRGNAG--FSDEERGK--MTELLQSGLT--DSFRYLYPE 192
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ YT W A N G RID+ L + Q D
Sbjct: 193 KTGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQIED 230
>gi|86149633|ref|ZP_01067863.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597280|ref|ZP_01100515.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218561918|ref|YP_002343697.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168
= ATCC 700819]
gi|317511923|ref|ZP_07969188.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384447548|ref|YP_005655599.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403055041|ref|YP_006632446.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407941706|ref|YP_006857346.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415732396|ref|ZP_11473859.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|419626455|ref|ZP_14159440.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|419628923|ref|ZP_14161668.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419632465|ref|ZP_14165003.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|419637977|ref|ZP_14170111.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|419638983|ref|ZP_14171026.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419646732|ref|ZP_14178191.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419650601|ref|ZP_14181817.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419651439|ref|ZP_14182536.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419660313|ref|ZP_14190789.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419662243|ref|ZP_14192547.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419667742|ref|ZP_14197699.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-10]
gi|419676175|ref|ZP_14205415.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
110-21]
gi|419678025|ref|ZP_14207133.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419693096|ref|ZP_14221133.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|424849397|ref|ZP_18273853.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|85839901|gb|EAQ57160.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190341|gb|EAQ94315.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112359624|emb|CAL34409.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168
= ATCC 700819]
gi|284925531|gb|ADC27883.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927175|gb|EFV06525.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315928582|gb|EFV07877.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487448|gb|EHI17397.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380603300|gb|EIB23419.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|380608666|gb|EIB28434.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380608875|gb|EIB28618.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|380614477|gb|EIB33854.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|380617635|gb|EIB36800.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380623097|gb|EIB41820.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380628275|gb|EIB46596.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380631186|gb|EIB49393.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380637065|gb|EIB54723.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380638622|gb|EIB56167.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380645423|gb|EIB62470.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380650540|gb|EIB67164.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
110-21]
gi|380652432|gb|EIB68914.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380667726|gb|EIB83138.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|401780693|emb|CCK66386.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407905544|gb|AFU42373.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 252
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK+QF+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 62/225 (27%)
Query: 7 FSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
FSK++ L I D EGR + + F L NVY P + + RI +++ + +
Sbjct: 69 FSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS-QQKLARIDYRMAWENDF 127
Query: 58 QKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLV 107
+ ++L L + + + V GDLN+A ID R +AG D + +F L+
Sbjct: 128 R---DYLNELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF-----DELL 179
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 167
+SG F D +R +P++ AY+ W A N G RID+ L + D +
Sbjct: 180 KSG--FIDTYRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE---- 226
Query: 168 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
D L+D + T++EGSDH PV + +
Sbjct: 227 --------DRLVD-------------ANIHTQIEGSDHCPVELII 250
>gi|357418867|ref|YP_004931859.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
gi|355396333|gb|AER65762.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
Length = 262
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 21 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIA 80
C+ D H I N+Y P+ + D + KL+FF L K + +I VVGDLN+A
Sbjct: 98 CLFGDDLHLI--NLYVPQGKALDHPDYEMKLKFFDRLLKYLDKNFTPESKIIVVGDLNVA 155
Query: 81 PAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 134
P +D + PD +N + + F S+L E G F DVFR P E ++ W
Sbjct: 156 PTDMDVTN--PDNKRNHVCFHEDVKKAFNSLL-EWG--FVDVFRKHRPGEGE-FSFWDYR 209
Query: 135 T-GAEQFNYGTRIDHILCAGPCLHQKHD 161
A + N G RIDH+L P + D
Sbjct: 210 VKNALERNIGWRIDHLLATKPVAERSKD 237
>gi|406706210|ref|YP_006756563.1| exodeoxyribonuclease III [alpha proteobacterium HIMB5]
gi|406651986|gb|AFS47386.1| exodeoxyribonuclease III [alpha proteobacterium HIMB5]
Length = 258
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID----R 86
L N+Y P + DT + ++K + + L K+ + L + I + GD NI P+A D +
Sbjct: 104 LINIYTPNGNPVDTEKYEYKKDWINQLIKQLKSLSKKNSNIILAGDFNIIPSAEDVYNPK 163
Query: 87 CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146
+ E R +R ML DV+R + E +E YT W GA Q N G RI
Sbjct: 164 SFEDDALFRLEIRKKYREML---NLGLNDVYRHFY-EDKEGYTFWDYMRGAWQKNNGMRI 219
Query: 147 DHILCAGPCL 156
DH L + +
Sbjct: 220 DHFLVSNSLI 229
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F L NVY P + E R+ +++ + Q E L + + V G
Sbjct: 86 DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCE-DLSKKKTTIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAYTCWPSN 134
D+N+A ID + + F R L F D FR +P+R AYT W
Sbjct: 144 DMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAYTWWSYM 203
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 204 FKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 249
>gi|73539900|ref|YP_294420.1| AP endonuclease [Ralstonia eutropha JMP134]
gi|72117313|gb|AAZ59576.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ralstonia
eutropha JMP134]
Length = 258
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR V + H + +VY P S + R Q K +F L GR I +
Sbjct: 88 EFDSEGRYVEVQYPHLAVISVYVPSGSSSEE-RQQAKFRFMEAFLPHLLQLKASGREIVL 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID + + + F R W + G + DVFR P R E YT
Sbjct: 147 CGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGQLFDMHG--YVDVFRQLDP-RPEQYT 203
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W + A N G RID+ L
Sbjct: 204 WWSNRGQAYAKNVGWRIDYHLA 225
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D+EGR + + + L NVY P + E R+++++++ F V K+ E Q + +
Sbjct: 87 DNEGRVITLEFEEYFLVNVYTPNSKRE-LERLEYRMKWEDDFRVYLKQLE----QTKPVI 141
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYT 129
+ GD+N+A ID + + F + R S L+E G F D FR+ +P++ AYT
Sbjct: 142 ICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDTFRTLYPDKTGAYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
W A + N G RID+ C L +
Sbjct: 200 WWSYMFKAREKNVGWRIDY-FCISEALKDR 228
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 62/229 (27%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK++ L I D EGR + + F L NVY P + + RI +++ +
Sbjct: 65 GTAVFSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS-QQKLARIDYRMAW 123
Query: 54 FHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFR 103
+ + +L L + + + V GDLN+A ID R +AG D + +F
Sbjct: 124 ENDFRS---YLNELNKAKPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF----- 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
L++SG F D +R +P++ AY+ W A N G RID+ L + D +
Sbjct: 176 GELLKSG--FIDTYRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE 226
Query: 164 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
D L+D K + T++EGSDH PV + +
Sbjct: 227 ------------DRLVDAK-------------IHTQIEGSDHCPVELII 250
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F L NVY P + E R+ +++ + Q E L + + V G
Sbjct: 93 DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCE-DLSKKKTTIVCG 150
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAYTCWPSN 134
D+N+A ID + + F R L F D FR +P+R AYT W
Sbjct: 151 DMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAYTWWSYM 210
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 211 FKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 256
>gi|114707219|ref|ZP_01440117.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114537415|gb|EAU40541.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 24 TDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAA 83
TD G + ++Y P + T + ++KL + L++ E LL R+ + GD N+ P
Sbjct: 98 TDSGPLRVASIYLPNGNPLGTAKFEYKLAWMDRLERHAEALLAHEERLILAGDYNVIPQP 157
Query: 84 IDRCDAGPDFAKNEFRIWFRS---MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQF 140
D D F+ R LV G F D R +R E YT W GA Q
Sbjct: 158 KDVHDPAAWLNDALFQPESRGNLRRLVHLG--FADALRMTD-DRAELYTFWDYQAGAWQK 214
Query: 141 NYGTRIDHILCA 152
N G RIDH+L +
Sbjct: 215 NNGIRIDHLLLS 226
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFF 54
E L+ S +++ D EGR ++ + +F L NVY P R D T I+F L +
Sbjct: 75 EPLQVISDIGIVEHDREGRVIVAEFENFFLLNVYVPNSGEALARLDYRQTWDIEF-LAYC 133
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESG 110
LQK+ + C GD N+A ID P++ K+ + I S +++G
Sbjct: 134 RQLQKKKPLIAC--------GDFNVAHQEIDIARPKPNYNKSAGYTQVEIDGFSRFLDAG 185
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
D FR HP+ AY+ W GA N G RID++L +
Sbjct: 186 --LVDTFRHFHPD-TVAYSWWSFRGGARARNVGWRIDYVLTS 224
>gi|283955677|ref|ZP_06373170.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|283792902|gb|EFC31678.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
Length = 252
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLAYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANVNTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|119358281|ref|YP_912925.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
gi|119355630|gb|ABL66501.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
Length = 256
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D E R + G F L Y PR + ++ R+ KL++F + E LL +GR+
Sbjct: 84 EIPAFDFENRTCVLHTGQFTLTGCYVPRGEGDEHYRL--KLRYFEQTRLFIENLLLEGRQ 141
Query: 71 IFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
I GD+N+A ID + G + E R + L DV R + PER +
Sbjct: 142 IVFTGDMNVAHRDIDVHRSQNKPGAVGLRAEERSSIDACLALG---LRDVMRERAPERND 198
Query: 127 AYTCWPSNTGAEQFNYGTRID 147
+T WP A + N G RID
Sbjct: 199 LFTWWPYWKNARERNLGWRID 219
>gi|256269259|gb|EEU04581.1| Apn2p [Saccharomyces cerevisiae JAY291]
gi|259144827|emb|CAY77766.1| Apn2p [Saccharomyces cerevisiae EC1118]
gi|365767051|gb|EHN08539.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 520
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDIVDDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + ++ + L VY P A D R+ F+L++ F+ RR V
Sbjct: 85 EFDHEGRVITLEYEDYYLMTVYTPNA-QRDLKRLGFRLKWGQAFT---NFIDRLDRRKPV 140
Query: 74 V--GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
V GDLN+A AID + + F R S L+++G F D FR HP+R AY
Sbjct: 141 VFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSELLDTG--FIDSFRYLHPDREGAY 198
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W A N G RID+ + +
Sbjct: 199 SWWSYMGNARARNVGWRIDYFVIS 222
>gi|6319452|ref|NP_009534.1| DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|586406|sp|P38207.1|APN2_YEAST RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|536013|emb|CAA84838.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810316|tpg|DAA07101.1| TPA: DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|392301201|gb|EIW12290.1| Apn2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 520
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 105/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+L+F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKAADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L + P Q P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDILDDRIEPGTTQVPIPKFEARYKYNLR--NHNVLEMFAKKDTNKESNKQKY 411
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D+G + +VY P S D R FK+ + Q+ L ++ + G
Sbjct: 87 DNEGRFIRADYGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRPKLILCG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID D + + F R W L F D FR+ HPE +E YT W
Sbjct: 146 DYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFIDTFRALHPELQE-YTWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + P + + N H + C +L++
Sbjct: 202 SYRFNSRAKNKGWRIDYCMVTEPVRSMLKEARILN-DAVHSDHCPMLLE 249
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 31/152 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL--LCQG 68
D EGR + + F L NVY P + E +R+ +++ RWE +L L Q
Sbjct: 86 DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYLTALDQS 136
Query: 69 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
+ + + GD+N+A ID R +AG D +++ + L+E+G F D FR
Sbjct: 137 KPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHI 189
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+P++ +AYT W A N G RID+ L +
Sbjct: 190 YPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|365762129|gb|EHN03737.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 414
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 102/266 (38%), Gaps = 73/266 (27%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D ++ L++DSEGRCV+ + ++ +VY P + F+++F VL +R + L
Sbjct: 151 DLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKGELFRIKFLKVLLRRVKNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA------------KNEFR------------- 99
G++I ++GD+N+ ID D +F+ + +R
Sbjct: 211 DKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDLEQRYRDEAIQFIVNPETP 270
Query: 100 -------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
I F S+L ++ G D R R YT W S + NYG+RID I
Sbjct: 271 HRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVWNSLKNSRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LA------------SSKLEQC-IKAGDILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEVPEIPQHST-----PSLASRY 230
L + + ST P +RY
Sbjct: 359 SDLDLRDQEVKSSTTEISIPKFEARY 384
>gi|323356266|gb|EGA88070.1| Apn2p [Saccharomyces cerevisiae VL3]
Length = 520
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDIVDDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 411
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|51013817|gb|AAT93202.1| YBL019W [Saccharomyces cerevisiae]
Length = 520
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 105/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+L+F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKAADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L + P Q P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDILDDRIEPGTTQVPIPKFEARYKYNLR--NHNVLEMFAKKDTNKESNKQKY 411
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|410100459|ref|ZP_11295420.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
gi|409215701|gb|EKN08697.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
Length = 253
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D+EGR + D+G + +VY P S D R FK+++ QK L + + +
Sbjct: 87 KYDNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMEWLEDFQKYVVELQKTRKNLIL 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NI ID D + + F R W L F D FR +PE+++ YT
Sbjct: 146 CGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGFIDTFRHLNPEKQQ-YT 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPC 155
W A + N G RID+ + + P
Sbjct: 202 WWSYRFNARKNNKGWRIDYCMVSEPV 227
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 31/152 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL--LCQG 68
D EGR + + F L NVY P + E +R+ +++ RWE +L L Q
Sbjct: 86 DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYLTALDQS 136
Query: 69 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
+ + + GD+N+A ID R +AG D +++ + L+E+G F D FR
Sbjct: 137 KPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHI 189
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+P++ +AYT W A N G RID+ L +
Sbjct: 190 YPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|359727783|ref|ZP_09266479.1| exodeoxyribonuclease III [Leptospira weilii str. 2006001855]
gi|417779927|ref|ZP_12427703.1| exodeoxyribonuclease III [Leptospira weilii str. 2006001853]
gi|410779896|gb|EKR64499.1| exodeoxyribonuclease III [Leptospira weilii str. 2006001853]
Length = 254
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N Y P + D VR K++F + QK + I +
Sbjct: 88 FDKEGRSIYLEYSNFALWNSYFPSGTTGD-VRQAAKMKFLDLFQKEAIKRRKKQPNIILC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWLSGFLAQ---GWVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|323338805|gb|EGA80020.1| Apn2p [Saccharomyces cerevisiae Vin13]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 94/266 (35%), Gaps = 73/266 (27%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 26 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 85
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 86 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 145
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 146 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 205
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 206 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 233
Query: 210 MCLGEV-----PEIPQHSTPSLASRY 230
L V P Q + P +RY
Sbjct: 234 SDLDIVDDRIEPGTTQVAIPKFEARY 259
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + H + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFEHVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P++
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDQ 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|398347543|ref|ZP_10532246.1| exodeoxyribonuclease III [Leptospira broomii str. 5399]
Length = 254
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 19/154 (12%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+F D EGR V+ D+G F ++ VY P + DT R K++F K +
Sbjct: 84 GVEEF--------DREGRSVLADYGDFAIWTVYFPSGTTGDT-RQAAKMRFLDEFLKLSK 134
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVF 117
+ + + + GD+NIA D D + AKN E R W L ++G + D F
Sbjct: 135 KIRKKHPNLILCGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KTG--WIDSF 190
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
R +PE++E Y+ W GA N G RID+
Sbjct: 191 RELYPEKQE-YSWWTFRAGARGNNKGWRIDYFFV 223
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + +F + VY P + +E +R+ +++ + + + L + + + V G
Sbjct: 86 DQEGRVITLEFDNFYMVTVYTPNSKNE-LLRLDYRMVWEDEF-RSYLLRLNETKPVIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID + + F I R S L++SG F D FR +PE AY+ W
Sbjct: 144 DLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTLLDSG--FIDTFRFFYPELEGAYSWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
A + N G RID+ L + D + H
Sbjct: 202 YRFNARKNNAGWRIDYFLTSQELKENLKDAKIH 234
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 27/164 (16%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKL----QFFHVLQKRWEFLLCQGRR 70
D EGR + + F L VY P +S+D + R+ +++ F LQK L Q +
Sbjct: 87 DHEGRVITLEMEKFFLVTVYTP--NSQDGLKRLDYRMTWDDDFRAYLQK-----LDQSKP 139
Query: 71 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
+ V GDLN+A ID R +AG D + +F+ +L+++G F D FR +P
Sbjct: 140 VLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG--FIDTFRYFYP 192
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
E+ Y+ W A + N G RID+ L + + + + H
Sbjct: 193 EQTNIYSWWSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHT 236
>gi|386347698|ref|YP_006045947.1| exodeoxyribonuclease III Xth [Spirochaeta thermophila DSM 6578]
gi|339412665|gb|AEJ62230.1| exodeoxyribonuclease III Xth [Spirochaeta thermophila DSM 6578]
Length = 256
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR +I D G F+ F Y P + E R+ +KL + + +++R + + GR + +
Sbjct: 88 FDREGRTLIADFGSFVFFGCYFPNS-QEAGARLDYKLAYCNAVKERADAYVAAGRHVLIS 146
Query: 75 GDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA +D + P + E R W + + SG + D FR E YT
Sbjct: 147 GDFNIAHTPLDLARPEANEKNPGYLPEE-REWM-TYFLSSG--YVDTFRMFTKEGGH-YT 201
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W A + + G RID+
Sbjct: 202 WWTYRFKAREKDIGWRIDY 220
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 49/203 (24%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F VY P A +E R+ +++++ + W L + + + V G
Sbjct: 86 DQEGRVITLEYEDFYFVTVYTPNAQNE-LARLDYRMKWEDDF-RAWLKKLEENKPVVVTG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
D+N+A ID R AG D + +F + L+++G F D FR +P++
Sbjct: 144 DMNVAHKEIDLKNPKTNRKSAGFSDEERQKF-----TELLDAG--FIDTFRYFYPDQEGI 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
Y+ W A + N G RID+ C CL D L+D
Sbjct: 197 YSWWSYRFRAREKNAGWRIDY-FCVSECLK------------------DRLVD------- 230
Query: 188 NAPRWKGGMSTRLEGSDHAPVYM 210
G+ T + GSDH PV +
Sbjct: 231 ------AGILTDIMGSDHCPVVL 247
>gi|323349886|gb|EGA84099.1| Apn2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 455
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMFAKKDTNKESNKQKY 411
>gi|347359779|ref|YP_387047.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
gi|342906313|gb|ABB37352.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
Length = 255
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 18/172 (10%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FS+ E L + EGR ++ ++ F FN+Y P S D R+Q+KL F
Sbjct: 68 GVAAFSRREPLSVAYDLPVEQYQGEGRVIMLEYDAFYYFNIYFPNGQSGDE-RLQYKLGF 126
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVES 109
+ + + L + + I V GD N A +D + + F R W ++
Sbjct: 127 YDAFLEHAQ-TLRRKKPIVVCGDFNTAHRPVDLARPRENEGTSGFLPVERAWM-DKFIDH 184
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
G + D FR HP+ + Y+ W A N G RID+ + H D
Sbjct: 185 G--YVDTFRLVHPDAQAMYSWWSYRFKARDRNVGWRIDYFFVSDELRHAVKD 234
>gi|152992239|ref|YP_001357960.1| exodeoxyribonuclease III [Sulfurovum sp. NBC37-1]
gi|151424100|dbj|BAF71603.1| exodeoxyribonuclease III [Sulfurovum sp. NBC37-1]
Length = 256
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ I +EGR G ++LFNVY P + R+ +KL F+ + +G+ I
Sbjct: 87 IDILNEGRINEYHFGSYVLFNVYFPNGQRSEE-RLAYKLAFYERFLAYINEVRTEGKSII 145
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD+N A ID + + F R W +L + D FR H + + Y
Sbjct: 146 ICGDVNTAHKEIDLARPKSNENTSGFLPVERAWMDKLL---DNGYIDTFRYIHGDEPDRY 202
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W T A + N G RID+ +
Sbjct: 203 SWWSYRTKARERNVGWRIDYFFVS 226
>gi|57168378|ref|ZP_00367512.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|305432793|ref|ZP_07401952.1| exodeoxyribonuclease III [Campylobacter coli JV20]
gi|419537619|ref|ZP_14077023.1| exodeoxyribonuclease III [Campylobacter coli 111-3]
gi|419539254|ref|ZP_14078594.1| exodeoxyribonuclease III [Campylobacter coli 90-3]
gi|419541394|ref|ZP_14080602.1| exodeoxyribonuclease III [Campylobacter coli Z163]
gi|419542601|ref|ZP_14081721.1| exodeoxyribonuclease III [Campylobacter coli 2548]
gi|419544998|ref|ZP_14083933.1| exodeoxyribonuclease III [Campylobacter coli 2553]
gi|419547518|ref|ZP_14086232.1| exodeoxyribonuclease III [Campylobacter coli 2680]
gi|419549499|ref|ZP_14088088.1| exodeoxyribonuclease III [Campylobacter coli 2685]
gi|419550710|ref|ZP_14089200.1| exodeoxyribonuclease III [Campylobacter coli 2688]
gi|419555182|ref|ZP_14093283.1| exodeoxyribonuclease III [Campylobacter coli 2698]
gi|419557883|ref|ZP_14095777.1| exodeoxyribonuclease III [Campylobacter coli 80352]
gi|419561482|ref|ZP_14099084.1| exodeoxyribonuclease III [Campylobacter coli 86119]
gi|419561787|ref|ZP_14099317.1| exodeoxyribonuclease III [Campylobacter coli 1091]
gi|419565000|ref|ZP_14102360.1| exodeoxyribonuclease III [Campylobacter coli 1098]
gi|419567103|ref|ZP_14104338.1| exodeoxyribonuclease III [Campylobacter coli 1148]
gi|419569086|ref|ZP_14106205.1| exodeoxyribonuclease III [Campylobacter coli 1417]
gi|419570878|ref|ZP_14107904.1| exodeoxyribonuclease III [Campylobacter coli 7--1]
gi|419571123|ref|ZP_14108084.1| exodeoxyribonuclease III [Campylobacter coli 132-6]
gi|419574147|ref|ZP_14110914.1| exodeoxyribonuclease III [Campylobacter coli 1891]
gi|419575404|ref|ZP_14112095.1| exodeoxyribonuclease III [Campylobacter coli 1909]
gi|419578203|ref|ZP_14114730.1| exodeoxyribonuclease III [Campylobacter coli 59-2]
gi|419580139|ref|ZP_14116520.1| exodeoxyribonuclease III [Campylobacter coli 1948]
gi|419581318|ref|ZP_14117623.1| exodeoxyribonuclease III [Campylobacter coli 1957]
gi|419583258|ref|ZP_14119443.1| exodeoxyribonuclease III [Campylobacter coli 1961]
gi|419586004|ref|ZP_14122031.1| exodeoxyribonuclease III [Campylobacter coli 202/04]
gi|419587704|ref|ZP_14123611.1| exodeoxyribonuclease III [Campylobacter coli 67-8]
gi|419592104|ref|ZP_14127423.1| exodeoxyribonuclease III [Campylobacter coli 37/05]
gi|419595728|ref|ZP_14130824.1| exodeoxyribonuclease III [Campylobacter coli LMG 23336]
gi|419597634|ref|ZP_14132602.1| exodeoxyribonuclease III [Campylobacter coli LMG 23341]
gi|419599416|ref|ZP_14134275.1| exodeoxyribonuclease III [Campylobacter coli LMG 23342]
gi|419600412|ref|ZP_14135171.1| exodeoxyribonuclease III [Campylobacter coli LMG 23344]
gi|419603134|ref|ZP_14137696.1| exodeoxyribonuclease III [Campylobacter coli 151-9]
gi|419605160|ref|ZP_14139608.1| exodeoxyribonuclease III [Campylobacter coli LMG 9853]
gi|419609408|ref|ZP_14143556.1| exodeoxyribonuclease III [Campylobacter coli H6]
gi|419613482|ref|ZP_14147315.1| exodeoxyribonuclease III [Campylobacter coli H9]
gi|419615214|ref|ZP_14148965.1| exodeoxyribonuclease III [Campylobacter coli H56]
gi|419616775|ref|ZP_14150413.1| exodeoxyribonuclease III [Campylobacter coli Z156]
gi|57020186|gb|EAL56860.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|304444190|gb|EFM36844.1| exodeoxyribonuclease III [Campylobacter coli JV20]
gi|380514162|gb|EIA40483.1| exodeoxyribonuclease III [Campylobacter coli 111-3]
gi|380514591|gb|EIA40810.1| exodeoxyribonuclease III [Campylobacter coli Z163]
gi|380515539|gb|EIA41699.1| exodeoxyribonuclease III [Campylobacter coli 90-3]
gi|380520481|gb|EIA46308.1| exodeoxyribonuclease III [Campylobacter coli 2680]
gi|380522637|gb|EIA48309.1| exodeoxyribonuclease III [Campylobacter coli 2548]
gi|380524295|gb|EIA49912.1| exodeoxyribonuclease III [Campylobacter coli 2553]
gi|380525632|gb|EIA51141.1| exodeoxyribonuclease III [Campylobacter coli 2685]
gi|380529866|gb|EIA54984.1| exodeoxyribonuclease III [Campylobacter coli 2688]
gi|380530475|gb|EIA55552.1| exodeoxyribonuclease III [Campylobacter coli 2698]
gi|380535443|gb|EIA60151.1| exodeoxyribonuclease III [Campylobacter coli 86119]
gi|380540757|gb|EIA65053.1| exodeoxyribonuclease III [Campylobacter coli 1098]
gi|380540969|gb|EIA65258.1| exodeoxyribonuclease III [Campylobacter coli 80352]
gi|380542764|gb|EIA66991.1| exodeoxyribonuclease III [Campylobacter coli 1091]
gi|380544320|gb|EIA68363.1| exodeoxyribonuclease III [Campylobacter coli 1417]
gi|380544553|gb|EIA68575.1| exodeoxyribonuclease III [Campylobacter coli 1148]
gi|380545549|gb|EIA69522.1| exodeoxyribonuclease III [Campylobacter coli 7--1]
gi|380550100|gb|EIA73800.1| exodeoxyribonuclease III [Campylobacter coli 1891]
gi|380553657|gb|EIA77160.1| exodeoxyribonuclease III [Campylobacter coli 1909]
gi|380554267|gb|EIA77747.1| exodeoxyribonuclease III [Campylobacter coli 132-6]
gi|380555530|gb|EIA78840.1| exodeoxyribonuclease III [Campylobacter coli 1948]
gi|380555577|gb|EIA78886.1| exodeoxyribonuclease III [Campylobacter coli 59-2]
gi|380559678|gb|EIA82824.1| exodeoxyribonuclease III [Campylobacter coli 1957]
gi|380561037|gb|EIA84020.1| exodeoxyribonuclease III [Campylobacter coli 202/04]
gi|380563208|gb|EIA86049.1| exodeoxyribonuclease III [Campylobacter coli 67-8]
gi|380563590|gb|EIA86423.1| exodeoxyribonuclease III [Campylobacter coli 1961]
gi|380566769|gb|EIA89343.1| exodeoxyribonuclease III [Campylobacter coli 37/05]
gi|380573018|gb|EIA95182.1| exodeoxyribonuclease III [Campylobacter coli LMG 23336]
gi|380573033|gb|EIA95195.1| exodeoxyribonuclease III [Campylobacter coli LMG 23341]
gi|380574857|gb|EIA96949.1| exodeoxyribonuclease III [Campylobacter coli LMG 23342]
gi|380578644|gb|EIB00478.1| exodeoxyribonuclease III [Campylobacter coli LMG 9853]
gi|380579637|gb|EIB01424.1| exodeoxyribonuclease III [Campylobacter coli 151-9]
gi|380583058|gb|EIB04641.1| exodeoxyribonuclease III [Campylobacter coli LMG 23344]
gi|380584037|gb|EIB05530.1| exodeoxyribonuclease III [Campylobacter coli H6]
gi|380587643|gb|EIB08826.1| exodeoxyribonuclease III [Campylobacter coli H9]
gi|380591796|gb|EIB12758.1| exodeoxyribonuclease III [Campylobacter coli H56]
gi|380595035|gb|EIB15797.1| exodeoxyribonuclease III [Campylobacter coli Z156]
Length = 252
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ E LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYAKFLVYLEKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|319940717|ref|ZP_08015059.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319805868|gb|EFW02635.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 263
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D G I+ +VY P S D R K +F + + L GR + +
Sbjct: 88 EFDAEGRYVEADFGSVIVISVYFPSGSSSDD-RQSAKFRFLDAFKVHMDELRQSGREVII 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID + + + F R W + G + DVFR P R E YT
Sbjct: 147 CGDINIAHKEIDLKNWKGNLDHSGFLPEERAWLDQRFGKEG--WVDVFRMLDP-RPERYT 203
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W A N G RID+
Sbjct: 204 WWSQRGQARAKNVGWRIDY 222
>gi|114566736|ref|YP_753890.1| DNA-(apurinic or apyrimidinic site) lyase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337671|gb|ABI68519.1| DNA-(apurinic or apyrimidinic site) lyase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 237
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +I+ H + +L NVY P + R+ +KL+F+ L E L + R+ +
Sbjct: 71 EFDREGRVLISFHENLVLLNVYFPNGQMGEE-RLAYKLRFYEYLINFCEELKKRYPRLVI 129
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWP 132
GD N A ID + + ++ F R ML + D FR +PE+ + Y+ W
Sbjct: 130 CGDFNTAHREIDLKNPKANEGRSGFLPIEREMLDRFLSYGYVDAFRYLYPEKVQ-YSWWS 188
Query: 133 SNTGAEQFNYGTRID 147
T A + N G RID
Sbjct: 189 YRTRARERNAGWRID 203
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + F L NVY P + E R+++++ F H L++ L + +
Sbjct: 87 DREGRIITLEMEDFFLVNVYTPNS-QEGLKRLEYRMTWEDDFLHFLKQ-----LKTQKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GDLN+A ID R +AG +E R F +L F D FR +P +
Sbjct: 141 IVCGDLNVAHQEIDLKNPKTNRKNAG---FTDEERYKFTQLL---SAGFTDTFRYFYPNQ 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
++ Y+ W A + N G RID+ L A L++K
Sbjct: 195 KDIYSWWSYRFKAREKNAGWRIDYFL-ASASLNEK 228
>gi|419594012|ref|ZP_14129203.1| exodeoxyribonuclease III [Campylobacter coli LMG 9854]
gi|380567977|gb|EIA90467.1| exodeoxyribonuclease III [Campylobacter coli LMG 9854]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ E LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYAKFLVYLEKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + + + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFENVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDTFRYLYPDR 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + H + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFEHVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P++
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDQ 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K+E L + + EGR + + F L NVY P + D R+ ++L++
Sbjct: 64 GTAVFTKEEPLSVHYGLGDVENEPEGRIITLEFPKFYLVNVYTPNS-QRDLARLPYRLEW 122
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGS 112
+ + + L + + + + GDLN+A ID + + + F R+ + E
Sbjct: 123 EDRI-RSYLIDLDKDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSELLNAG 181
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
F D FR +PE+ AYT W A + N G RID+ + +
Sbjct: 182 FIDTFRYFYPEKEGAYTWWSYINKARERNIGWRIDYFIAS 221
>gi|419611477|ref|ZP_14145500.1| exodeoxyribonuclease III [Campylobacter coli H8]
gi|380588017|gb|EIB09176.1| exodeoxyribonuclease III [Campylobacter coli H8]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK+QF+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|366990495|ref|XP_003675015.1| hypothetical protein NCAS_0B05590 [Naumovozyma castellii CBS 4309]
gi|342300879|emb|CCC68643.1| hypothetical protein NCAS_0B05590 [Naumovozyma castellii CBS 4309]
Length = 539
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 93/247 (37%), Gaps = 69/247 (27%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
+G+E SKDE L +DS+GRCV+ + ++ VY P F+++F VL KR
Sbjct: 145 DGIE-MSKDEALDLDSQGRCVMIELKCQIVVICVYCPANSGLSEEGELFRMKFLKVLFKR 203
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------------GPDFAKN------EF--- 98
L G+ ++GD+N+ ID ++ G KN EF
Sbjct: 204 IRNLYAMGKNPILMGDVNVCRDLIDSAESLEVLRIPVTNNTDGIQLEKNYCLNCQEFVMN 263
Query: 99 -----RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTR 145
R +L +S G D R +R + YT W + NYG+R
Sbjct: 264 PATPHRRLLNQLLKDSIVPDLAKDGILVDSTRWLQTRKRVKMYTVWNTLKNYRPVNYGSR 323
Query: 146 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 205
+D IL + + E DIL D + GSDH
Sbjct: 324 VDFILTSDKLIPS-------------FKESDILAD-------------------VMGSDH 351
Query: 206 APVYMCL 212
PVY+ L
Sbjct: 352 CPVYLDL 358
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H E + + + G+RF+VC R +G N E++CG+F+W
Sbjct: 493 PLCK-HGEDAILKTSRTSTHP-GKRFWVCNRPQGDTGNTESSCGFFQWV 539
>gi|325981921|ref|YP_004294323.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
gi|325531440|gb|ADZ26161.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
Length = 257
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
ID+EGR + D G+ + ++Y P S + + F +FF VLQ L R I
Sbjct: 88 IDAEGRFLQADFGNLSIISIYLPSGSSGEHRQAAKFYFMEKFFPVLQN----LKISNREI 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GD NIA ID + + + F R W ++L SG F DVFR + E +
Sbjct: 144 ILCGDWNIAHKEIDLKNWRSNQKNSGFLPEEREWLSNVLENSG--FIDVFRRLNAE-PDQ 200
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
YT W + A N G RID+ + A P + Q
Sbjct: 201 YTWWSNRGQAWAKNVGWRIDYQI-ATPAIAQ 230
>gi|78186003|ref|YP_374046.1| AP endonuclease [Chlorobium luteolum DSM 273]
gi|78165905|gb|ABB23003.1| AP endonuclease, family 1 [Chlorobium luteolum DSM 273]
Length = 267
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D E R V+ G + Y PR DS KL + + + LL GR+
Sbjct: 84 EIPPFDIENRTVVLHTGELSIIGTYVPRGDSAQ--HYVLKLGYLEAMHEYVRELLACGRQ 141
Query: 71 IFVVGDLNIAPAAID--RCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERR 125
I V GD+N+A +D R + P R RS L+ G S DV R +PER
Sbjct: 142 ILVTGDMNVAHRQVDLHRSENRP--GATGIRPEERSAIDRLIALGLS--DVMRELNPERD 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAG 153
+ +T WP A + N G RID +G
Sbjct: 198 DLFTWWPYWRMARERNIGWRIDCFYLSG 225
>gi|363754355|ref|XP_003647393.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891030|gb|AET40576.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
Length = 460
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 68/239 (28%)
Query: 10 DELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 68
D+ ++DS+GRCVI + ++ + Y P ++ F+++F +L KR L QG
Sbjct: 148 DDAEELDSQGRCVIIELACGIVVISTYCPANSTQTEEGEVFRMKFLKLLFKRVRNLKEQG 207
Query: 69 RRIFVVGDLNIAPAAIDR-------------CDAGPDFAK-----------NEFRI---W 101
+ + ++GD+N++ ID+ DAG +F K + RI
Sbjct: 208 KEVVLMGDINVSRDLIDKAEALEQQRLIIRDADAGLEFEKKYMNAVRGFIYDPLRITCRM 267
Query: 102 FRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAG 153
ML +S G D R R + YT W + + NYG+R+D+I
Sbjct: 268 LNEMLADSIIPEFARNGILIDSTRYIQGRNRLKMYTVWNTIMNSRPVNYGSRLDYI---- 323
Query: 154 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
FVT + + NA W M GSDH PV++ L
Sbjct: 324 -------------FVTTALQS----------RIRNANIWPQIM-----GSDHCPVFLDL 354
>gi|419555879|ref|ZP_14093881.1| exodeoxyribonuclease III [Campylobacter coli 84-2]
gi|419607406|ref|ZP_14141728.1| exodeoxyribonuclease III [Campylobacter coli LMG 9860]
gi|380535456|gb|EIA60163.1| exodeoxyribonuclease III [Campylobacter coli 84-2]
gi|380584746|gb|EIB06146.1| exodeoxyribonuclease III [Campylobacter coli LMG 9860]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ E LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYAKFLVYLEKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|154148197|ref|YP_001407152.1| exodeoxyribonuclease III [Campylobacter hominis ATCC BAA-381]
gi|153804206|gb|ABS51213.1| exodeoxyribonuclease III [Campylobacter hominis ATCC BAA-381]
Length = 251
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
++EGR + D LFN+Y P +D R+ FK++F+ + L QGR+I + G
Sbjct: 86 ENEGRVLQHDFNEISLFNIYFPNG-QKDENRLNFKMEFYDKFLIYLDKLKKQGRKIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + ++ F R W +L F D FR+ + ++ AY+ W
Sbjct: 145 DVNTAHREIDLKNPKSNSDRSGFLPIERAWIDKLLSH---GFVDTFRAINGDKI-AYSWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 201 SYRFNARAKNAGWRIDYFFIS 221
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRIFV 73
EGR + ++ F L NVY P + D R+ F+L +F ++ +L Q + + V
Sbjct: 91 EGRILTLEYEDFFLVNVYTPNS-QRDLARLPFRLDWEDRFLAYIK-----MLDQQKSVIV 144
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWP 132
GDLN+A A ID + + + F R + G F D FR +PE + YT W
Sbjct: 145 CGDLNVAHAEIDLKNPKSNRNNSGFTEEERGKMTRLLGEGFSDTFRHFYPELTDKYTWWS 204
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+ N G RID+ + + D + H
Sbjct: 205 YMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIH 237
>gi|419698718|ref|ZP_14226400.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23211]
gi|380673488|gb|EIB88482.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23211]
Length = 252
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLAYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L Y P + +E R+Q++ F+H L++ L + + +
Sbjct: 86 DQEGRLITLEYPEFFLVTCYTPNSQNELKRLDYRLQWEEAFYHYLEE-----LKKQKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID + +AG F E R F +L F D FR +PE+
Sbjct: 141 VCGDLNVAHQEIDLKNWKTNQKNAG--FTMEE-RTAFSHLL---ANGFIDTFRYFYPEQT 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
Y+ W A + N G RID+ L + + D + H + + C + +D K
Sbjct: 195 GIYSWWSYRFNARKNNAGWRIDYFLTSDELKPRLIDAKIHTSIMGS-DHCPVELDLK 250
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ- 52
G FSK E L I D EGR + + F + VY P + E R++++++
Sbjct: 64 GTAIFSKKEPLNIRYGIGIEEHDQEGRVITLEFEKFYMVTVYTPNSQRE-LARLEYRMKW 122
Query: 53 ---FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE- 108
F H L+ L Q + + GDLN+A ID + + F R L
Sbjct: 123 EDDFLHYLRD-----LEQLKPVIFCGDLNVAHKEIDLKNPKANKNNAGFSAEERGKLTRV 177
Query: 109 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
F D FR +PE+ EAYT W A N G RID+ + Q D +N
Sbjct: 178 MDQGFTDTFRYFYPEQTEAYTWWSYMFNARANNAGWRIDYFCVSAELKDQLKDAVIYN 235
>gi|151946376|gb|EDN64598.1| AP endonuclease [Saccharomyces cerevisiae YJM789]
gi|349576362|dbj|GAA21533.1| K7_Apn2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 520
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKAADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L + P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDILDDRIEPGTTQVAIPKFEARYKYNLR--NHNVLEMFAKKDTNKESNKQKY 411
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|88601744|ref|YP_501922.1| exodeoxyribonuclease III [Methanospirillum hungatei JF-1]
gi|88187206|gb|ABD40203.1| exodeoxyribonuclease III (xth) [Methanospirillum hungatei JF-1]
Length = 264
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 41/203 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR + F+L NVY P + D R+ FKL+F+ ++ + + G RI
Sbjct: 96 EFDSEGRIITARFPEFVLMNVYFPNGGASDE-RLAFKLRFYDAFLEKIKTMDAAGERIIF 154
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W ++ F+D FR E + Y+
Sbjct: 155 CGDVNTAHKPIDLARPKENELVSGFLPIEREWIDRVI---AAGFYDSFRLFSDEGNQ-YS 210
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W + A N G RID+ + + F+T
Sbjct: 211 WWDYKSRARTRNVGWRIDYFFV---------NTAAKPFIT-------------------- 241
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
G+ + GSDH PV + L
Sbjct: 242 ---GAGIRNDIMGSDHCPVTLTL 261
>gi|419552755|ref|ZP_14091047.1| exodeoxyribonuclease III [Campylobacter coli 2692]
gi|380530631|gb|EIA55697.1| exodeoxyribonuclease III [Campylobacter coli 2692]
Length = 252
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|207347830|gb|EDZ73883.1| YBL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 442
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMFAKKDTNKESNKQKY 411
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 56/209 (26%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ---FFHVLQKRWEFLLCQGRRIF 72
+ +GR +I ++ ++ L N Y P + + K +F ++K L + I
Sbjct: 147 NGKGRIIIAEYENYYLINAYVPNSGRGLVNLDKRKFWDDCYFSFIKK-----LDLNKPIV 201
Query: 73 VVGDLNIAPAAIDRCDAGPDFAK---------NEFRIWFRSMLVESGGSFFDVFRSKHPE 123
VGDLN+A ID + ++ K N+F + L+++G F DVFR +PE
Sbjct: 202 YVGDLNVAHQEIDLANPKTNYNKTAGFTDQERNDF-----TRLLDAG--FVDVFRRLNPE 254
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
+ YT W + A + N G R+D+ + + +++ V ECDIL K
Sbjct: 255 KEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNK-------------VKECDILCSVK- 300
Query: 184 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
GSDH P+ + +
Sbjct: 301 ------------------GSDHCPLSLTI 311
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 56/209 (26%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ---FFHVLQKRWEFLLCQGRRIF 72
+ +GR +I ++ ++ L N Y P + + K +F ++K L + I
Sbjct: 140 NGKGRIIIAEYENYYLINAYVPNSGRGLVNLDKRKFWDDCYFSFIKK-----LDLNKPIV 194
Query: 73 VVGDLNIAPAAIDRCDAGPDFAK---------NEFRIWFRSMLVESGGSFFDVFRSKHPE 123
VGDLN+A ID + ++ K N+F + L+++G F DVFR +PE
Sbjct: 195 YVGDLNVAHQEIDLANPKTNYNKTAGFTDQERNDF-----TRLLDAG--FVDVFRRLNPE 247
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
+ YT W + A + N G R+D+ + + +++ V ECDIL K
Sbjct: 248 KEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNK-------------VKECDILCSVK- 293
Query: 184 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
GSDH P+ + +
Sbjct: 294 ------------------GSDHCPLSLTI 304
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 41/204 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ--GRRIFV 73
+ EGR + + F L VY P A D R+ ++L++ + R+ L Q G++ V
Sbjct: 86 EPEGRVITLEFQDFYLVTVYTPNA-KRDLSRLDYRLEW----EDRFRNYLLQLDGKKPVV 140
Query: 74 V-GDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTCW 131
V GDLN+A ID +A + + F R M F D +R +P++ +AYT W
Sbjct: 141 VCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAGFVDTYRYFYPDQTDAYTWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
+ N G RID+ L + +R P
Sbjct: 201 SFMPKVRERNIGWRIDYFLAS-----------------------------ERLAPALL-- 229
Query: 192 WKGGMSTRLEGSDHAPVYMCLGEV 215
+ G+ +++ GSDH PV + LG +
Sbjct: 230 -RAGIDSQVMGSDHCPVVLELGTI 252
>gi|399573806|gb|AFP49242.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 228
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L +Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 95 LDSEGRCVVLEFPAFVLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 152
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 153 GDLNVIRGEMDTCNV 167
>gi|330814067|ref|YP_004358306.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
gi|327487162|gb|AEA81567.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
Length = 247
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 3 GLEDFSKDELLKIDSE-------GRCVITDHGH----FILFNVYGPRADSEDTVRIQFKL 51
G+ SK+EL SE RC+ + H F+L ++Y P + +T + +K
Sbjct: 54 GVAIISKEELKVTTSEFKDPLGQSRCIAAEVSHNDKKFLLVSIYLPNGNPINTEKYDYKK 113
Query: 52 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLV 107
++ V +K + + I + GD N+ P+ D + K E R FRS+L
Sbjct: 114 KWMDVFEKYIVGKFKKNKNIIITGDFNVIPSEEDVGNPEDWTNDALFKLEIRKKFRSLL- 172
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 167
F D FR + E +E YT W G+ Q N G RIDH L + + ++ F
Sbjct: 173 --NLGFKDGFRLFNKEPKE-YTFWDYQQGSWQRNKGLRIDHYLVSDSMIQDLKTIEIDKF 229
>gi|329114100|ref|ZP_08242864.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
gi|326696639|gb|EGE48316.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
Length = 261
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D R V H +L N+Y P +S KL+F + L R LL + + G
Sbjct: 85 DPAARYVEVRTQHIVLGNLYLPNGNSGGEQGYATKLEFLNALTARARLLLAEETDFVLAG 144
Query: 76 DLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI PA ID GP+ + + R +R +L D R+ HP AYT W
Sbjct: 145 DYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLLWL---GLTDALRAVHPT-GAAYTFW 200
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + + G RIDH+L +
Sbjct: 201 DYQARAWERDCGLRIDHMLLS 221
>gi|206895175|ref|YP_002247534.1| exodeoxyribonuclease III [Coprothermobacter proteolyticus DSM 5265]
gi|206737792|gb|ACI16870.1| exodeoxyribonuclease III [Coprothermobacter proteolyticus DSM 5265]
Length = 250
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 27 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDR 86
G ++ NVY P D + R K+Q++ KR E LL + ++ +VGD NIA D
Sbjct: 90 GDTLIVNVYAPHGDLRGSPRFFQKIQWYKAFSKRMEELLRRYPKVLIVGDFNIALKDNDV 149
Query: 87 CDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQF 140
D P K+ E R +++L F DVFR+ +PE+ + +T W G
Sbjct: 150 WD--PILLKDTVGTFPEEREALKALL---SVGFVDVFRAIYPEKVQ-FTWWDYRQGRMWK 203
Query: 141 NYGTRIDHILCAGPCLHQKHDL 162
N G RID++ + + D+
Sbjct: 204 NQGMRIDYVFSSETLMPSIEDV 225
>gi|224532103|ref|ZP_03672735.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
gi|224511568|gb|EEF81974.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
Length = 255
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGIIAYYDDFVLINGYFPNSQALRR-RLVYKLDFLSYIENLIDSLVNGGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W + L + D FR + E YT
Sbjct: 146 DFNIAHTEIDLI--SPDSNRDSPGYYIEETTWIDNFL---NKGYVDTFRIFNKE-PGYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W TGA + N G RID+ + + F +V + IL
Sbjct: 200 WWNYRTGAREKNMGWRIDYFVV-------------NEFFKRNVKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
gi|300076743|gb|ADJ66142.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
Length = 258
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V D+G + ++Y P S + R + K +F L GR + +
Sbjct: 88 EFDDEGRYVECDYGDLTVISLYAPSGSSSEE-RQEAKFRFMEAFLPHLMELEKSGREVVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAY 128
GD NIA ID + + + F R W + + G DV+R HPE EAY
Sbjct: 147 CGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDQLG--LVDVYRRLHPETTGEAY 204
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W + A N G RID+
Sbjct: 205 TWWSNRGQAWANNVGWRIDY 224
>gi|189235831|ref|XP_966759.2| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 344
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGRC+ ++ F + NVY P A V + +L + +K + L Q + + + G
Sbjct: 225 DTEGRCITVEYETFFVVNVYVPNA-GRKLVTLPKRLDWNEQFEKFIKNLDSQ-KPVIICG 282
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR-SMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N+A ID + + F + R M G + D++R +PE+ +AYT W
Sbjct: 283 DMNVAHKEIDLANPKTNTKNAGFTVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFW 339
>gi|329119607|ref|ZP_08248288.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
gi|327464204|gb|EGF10508.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
Length = 276
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
L D + R + G + NVY ++ D+ + Q+K Q+F L + L + ++
Sbjct: 96 LPDDPQRRVIAATIGGVRVINVYCVNGEAPDSPKFQYKKQWFAALTEFVRGELARHDKLV 155
Query: 73 VVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
++GD NIAPA D D G ++ R WF+++L G D R HPE A+
Sbjct: 156 LLGDFNIAPADADCYDPEKWRGKILCTDQERGWFQTLL---GLGLTDSLRRIHPE--GAF 210
Query: 129 TCWPSNTGAE-QFNYGTRIDHIL 150
W GA Q G RIDH+L
Sbjct: 211 YTWFDYRGAMFQRGLGLRIDHLL 233
>gi|157414552|ref|YP_001481808.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|415746036|ref|ZP_11475281.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419636145|ref|ZP_14168418.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|157385516|gb|ABV51831.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|315932053|gb|EFV11006.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380610501|gb|EIB30090.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|419621753|ref|ZP_14155001.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23216]
gi|380601159|gb|EIB21477.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23216]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 66/229 (28%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK--- 50
G F+K+E + + D EGR + ++ + L VY P A D R+ ++
Sbjct: 67 GTAIFTKEEPISVQYGLGIEEHDQEGRVITAEYADYYLVTVYTPNA-KRDLTRLSYRQVW 125
Query: 51 ----LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIW 101
L F L++ + C GDLN+A ID + + F K E +
Sbjct: 126 EDDFLAFIKKLEETKPVIFC--------GDLNVAHKEIDLANPKTNTKNAGFTKEEREKF 177
Query: 102 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+VE+G D FR ++PE AYT W GA N G RID+ + +
Sbjct: 178 --DQIVENG--LVDAFRFRYPEAVGAYTWWSYMGGARARNIGWRIDYFVVS--------- 224
Query: 162 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 210
+T + E I D + GSDH PV M
Sbjct: 225 ----EVLTSRIQEVKIRAD-------------------VTGSDHCPVEM 250
>gi|205356520|ref|ZP_03223283.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
gi|205345525|gb|EDZ32165.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
Length = 259
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 151
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 208
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 209 SYRMKARERNVGWRIDYFFIS 229
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRR 70
+++ EGR + + + NVY P + D R++ +LQ+ V K+ L +
Sbjct: 83 ELEDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKK----LNSRKA 137
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 127
+ + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P + A
Sbjct: 138 VILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQEGA 195
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YT W + N G RID+ + +
Sbjct: 196 YTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|86153870|ref|ZP_01072073.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|419670267|ref|ZP_14199996.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-11]
gi|85842831|gb|EAQ60043.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|380644944|gb|EIB62042.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|167004926|ref|ZP_02270684.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
gi|419618499|ref|ZP_14152038.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
129-258]
gi|419654476|ref|ZP_14185409.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419666357|ref|ZP_14196381.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419681947|ref|ZP_14210750.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
140-16]
gi|419687481|ref|ZP_14215872.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380594688|gb|EIB15473.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
129-258]
gi|380630881|gb|EIB49097.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380641194|gb|EIB58575.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380656910|gb|EIB73037.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
140-16]
gi|380662330|gb|EIB78078.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|283955329|ref|ZP_06372828.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283793089|gb|EFC31859.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|255323252|ref|ZP_05364387.1| exodeoxyribonuclease III [Campylobacter showae RM3277]
gi|255299775|gb|EET79057.1| exodeoxyribonuclease III [Campylobacter showae RM3277]
Length = 256
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G+ +LFN+Y P +D R+ +K+ F+ + L+ QG+ + G
Sbjct: 86 DDEGRVLEHRFGNVVLFNIYFPNGQKDDA-RLAYKMDFYAKFLAYIQELVKQGKDVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCWPSN 134
D+N A ID + + + F R+ L E F D FR + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVACGFIDTFRHVRGDAADAYSWWSYR 204
Query: 135 TGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 205 FNARAKNVGWRIDYFFIS 222
>gi|384442595|ref|YP_005658847.1| Exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|419620840|ref|ZP_14154248.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419624796|ref|ZP_14157873.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|419633809|ref|ZP_14166233.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|419645293|ref|ZP_14176848.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|419649253|ref|ZP_14180535.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|419656249|ref|ZP_14187063.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419658622|ref|ZP_14189236.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-1]
gi|419664105|ref|ZP_14194278.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419671933|ref|ZP_14201561.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419673955|ref|ZP_14203397.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419678328|ref|ZP_14207387.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419683835|ref|ZP_14212505.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|419685622|ref|ZP_14214155.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419690758|ref|ZP_14218950.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419695704|ref|ZP_14223592.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23210]
gi|424847271|ref|ZP_18271851.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|315057682|gb|ADT72011.1| Exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|356485378|gb|EHI15372.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|380597742|gb|EIB18227.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|380598351|gb|EIB18765.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380610987|gb|EIB30552.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|380620606|gb|EIB39478.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|380624933|gb|EIB43554.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|380633153|gb|EIB51156.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380635608|gb|EIB53398.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380641572|gb|EIB58908.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380648748|gb|EIB65573.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380652521|gb|EIB68999.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657295|gb|EIB73376.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380660994|gb|EIB76919.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380662820|gb|EIB78505.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380668252|gb|EIB83621.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380677603|gb|EIB92467.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23210]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K E L++ D EGR + ++ F L VY P + +E R+ ++L +
Sbjct: 64 GTAIFTKHEPLQVTYGLNIAEHDQEGRVITLEYNDFYLVTVYTPNSQNE-LARLDYRLTW 122
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESG 110
+ + L + + V GDLN+A ID + + F I R + L+ SG
Sbjct: 123 EEAF-RNYLIGLDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSG 181
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
F D FR +P + Y+ W GA N G RID+ + +
Sbjct: 182 --FIDTFRYFYPTKENCYSWWSYRAGARAKNVGWRIDYFITS 221
>gi|169787224|gb|ACA80051.1| putative DNA lyase [Colletotrichum caudatum]
gi|399573804|gb|AFP49241.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 233
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L +Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|86151219|ref|ZP_01069434.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123837|ref|YP_004065841.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841566|gb|EAQ58813.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017559|gb|ADT65652.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 252
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|121613613|ref|YP_999970.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504268|gb|EAQ73304.2| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
Length = 259
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 151
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 208
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 209 SYRMKARERNVGWRIDYFFIS 229
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + + + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFENLFVVNCYTPNA-KRGLERIDYRLQWEADFKEYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F+ E + S L+ +G F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SALLNTG--FTDSFRYLYPDR 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL--LCQG 68
D+EGR + ++ F L VY P + +E R+ +++ WE FL L
Sbjct: 88 DTEGRVITLEYADFFLVTVYTPNSQNE-LKRLDYRMA--------WEDDFRNFLVSLKAK 138
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREA 127
+ + V GD+N+A ID + + F R+ + E S F D FR+ +PE ++A
Sbjct: 139 KPVIVCGDMNVAHEEIDIKNPSANRRNAGFTDEERAKMTELLASGFIDTFRTLNPELKDA 198
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
Y+ W A + N G RID+ L + + D + H
Sbjct: 199 YSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIH 236
>gi|256419936|ref|YP_003120589.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
gi|256034844|gb|ACU58388.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
Length = 254
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++ D+EGR + D G L N Y P S D R +K Q+ + L +
Sbjct: 85 FMQSDAEGRVIRLDFGDITLINTYMPSGTSGDE-RQTYKYQWLEEFYGYVDQLKATRPNL 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GD NI ID D + + F R W + F D FR HPE +
Sbjct: 144 IICGDYNICHKPIDIHDPVGNKKSSGFLPEERAWLDKLF---SNGFVDTFRHYHPEPHQ- 199
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPC 155
Y+ W T A N G RID+I P
Sbjct: 200 YSWWSVRTNARANNKGWRIDYISVTAPL 227
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 22/165 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFK 50
G F+K E L++ D EGR + + F + VY P + +E + R++++
Sbjct: 64 GTAIFTKKEPLQVTYGMGIEEHDKEGRVITLEFEDFYMVTVYTPNSQNELARLSYRMEWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLV 107
+F L+K L + + + V GDLN+A ID + + F I R S L+
Sbjct: 124 DEFRRFLKK-----LEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELL 178
Query: 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
E+G F D FR +P+ + Y+ W A + N G RID+ L +
Sbjct: 179 EAG--FIDTFRYFYPDAMDMYSWWSYRFKAREKNTGWRIDYFLAS 221
>gi|237747055|ref|ZP_04577535.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
gi|229378406|gb|EEO28497.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
Length = 260
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
+ D+EGR + D+ F L ++Y P S + +F FF L+K L + R
Sbjct: 88 EFDAEGRYLQCDYKDFSLVSLYAPSGSSSPERQEAKFRFMDHFFPFLEK-----LKESER 142
Query: 71 IFVV-GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 125
F++ GD NIA ID + + + F R W +L E G DV+R HP+
Sbjct: 143 EFIICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLSRILDELG--LIDVYRCLHPDTT 200
Query: 126 EAYTCWPSNTG-AEQFNYGTRIDH 148
+A W SN G A Q N G RID+
Sbjct: 201 DASYTWWSNRGQAWQKNVGWRIDY 224
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + + + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFENVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDR 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|307719602|ref|YP_003875134.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
gi|306533327|gb|ADN02861.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
Length = 256
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR +I D F+LF+ Y P + E R+ +KL + + +++R + + GR + +
Sbjct: 87 EFDREGRTLIADFRSFVLFDCYFPNS-QEAGARLDYKLAYCNAVKERADAYVAAGRHVLI 145
Query: 74 VGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD NIA +D + P + E R W L + D FR E Y
Sbjct: 146 SGDFNIAHTPLDLARPEANEKNPGYLPEE-REWMTYFL---SSGYVDTFRMFTKEGGH-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W A + + G RID+
Sbjct: 201 TWWTYRFKAREKDIGWRIDY 220
>gi|393775143|ref|ZP_10363457.1| exodeoxyribonuclease iii [Ralstonia sp. PBA]
gi|392717720|gb|EIZ05280.1| exodeoxyribonuclease iii [Ralstonia sp. PBA]
Length = 258
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V G+ + +VY P S + R Q K +F V L GR I +
Sbjct: 88 EFDDEGRYVEARFGNLAVISVYVPSGSSSEE-RQQAKFRFMDVFLPHLAQLKAAGREIVL 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID + + + F R W ++ G + DVFR P R E YT
Sbjct: 147 CGDVNIAHREIDIKNWKGNLKNSGFLPEERAWLTNLFDNHG--YVDVFRVLDP-RPEQYT 203
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
W + A N G RID+ L P + Q
Sbjct: 204 WWSNRGQAYAKNVGWRIDYHLTT-PGIAQ 231
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + + + N Y P A RI ++LQ F LQK L Q + +
Sbjct: 87 DQEGRVITLEFENVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQK-----LDQKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F+ E + S+L+ +G F D FR +P++
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SVLLNAG--FTDSFRYLYPDQ 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|108762443|ref|YP_632150.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
gi|108466323|gb|ABF91508.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D EGR I G + N Y P + +D RI +KL F+ L +R E L G R+
Sbjct: 87 ELDVEGRLQIARFGKLTVVNGYFPNGNGKDRDLSRIPYKLTFYRRLFERLEKPLRDGGRV 146
Query: 72 FVVGDLNIAPAAID-------RCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
V+GD N A ID R +G P+ + EF W R+ + D FR +
Sbjct: 147 LVMGDFNTAHQEIDLARPKENRETSGFRPE-EREEFDRWIRA-------GWVDTFRHFN- 197
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+ Y+ W G + N G RID++L +
Sbjct: 198 KGGGNYSWWSQRAGVREKNIGWRIDYVLAS 227
>gi|378821643|ref|ZP_09844523.1| exodeoxyribonuclease III [Sutterella parvirubra YIT 11816]
gi|378599588|gb|EHY32596.1| exodeoxyribonuclease III [Sutterella parvirubra YIT 11816]
Length = 263
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRR 70
+ D+EGR V D G I+ + Y P S D + +F QF +++R +GR
Sbjct: 87 EFDAEGRFVEADFGTHIVMSAYFPSGTSGDERQAAKYRFLDQFLDYVERR----RAEGRE 142
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 126
I GD+NIA ID + + + F R W +L E + DVFR P R +
Sbjct: 143 IVFCGDVNIAHKEIDLKNWKGNMKNSGFLPEERAWMTKLLSEH--DWRDVFRLLDP-RPD 199
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
YT W A N G RID+ + A P L
Sbjct: 200 QYTWWSQRGQARAKNVGWRIDYQI-ATPLL 228
>gi|94309094|ref|YP_582304.1| exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
gi|93352946|gb|ABF07035.1| Exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
Length = 258
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V + H + +VY P S + R Q K +F L GR I +
Sbjct: 88 EFDAEGRYVEVQYPHLAVISVYVPSGSSSEE-RQQAKFRFMEAFLPHLLELKASGREIVL 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID + + + F R W + G + DVFR P R E YT
Sbjct: 147 CGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDNHG--YVDVFRQLDP-RPEQYT 203
Query: 130 CWPSNTGAEQFNYGTRIDHIL 150
W + A N G RID+ L
Sbjct: 204 WWSNRGQAYAKNVGWRIDYHL 224
>gi|383784277|ref|YP_005468846.1| exodeoxyribonuclease III [Leptospirillum ferrooxidans C2-3]
gi|383083189|dbj|BAM06716.1| putative exodeoxyribonuclease III [Leptospirillum ferrooxidans
C2-3]
Length = 266
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D + R V D G + N Y P T + +K+++ L K E L + + V G
Sbjct: 85 DHQKRVVSADIGGIRVVNCYIPNGQDLGTEKFLYKMEWLAALTKYLETLHPKDHPVIVTG 144
Query: 76 DLNIAPAAIDRCDAGPD------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIAP +D D PD F + R + + F D FR +PE R+ Y+
Sbjct: 145 DFNIAPTDLDLWD--PDGMRDQIFCSKDERDHLQRIF---DLGFSDCFRQDNPEVRQ-YS 198
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPC 155
W G + N G RID +L + P
Sbjct: 199 WWDYRQGMFRQNKGLRIDLVLASAPL 224
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D+EGR + + F L NVY P + E R+++++++ + E+L L Q + + +
Sbjct: 87 DNEGRVITLEFEEFFLVNVYTPNSKRE-LERLEYRMKWEDDFR---EYLKQLEQTKPVII 142
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTC 130
GD+N+A ID + + F + R S L+E G F D FR +P++ AYT
Sbjct: 143 CGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQLLEHG--FVDTFRMLYPDKTGAYTW 200
Query: 131 WPSNTGAEQFNYGTRIDHILCAGP 154
W + + N G RID+ +G
Sbjct: 201 WSYMFKSREKNAGWRIDYFCVSGA 224
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRI 71
+ D EGR + ++ F L N Y P + +E R+ F+ F +E++ L Q + I
Sbjct: 85 EFDHEGRVITLEYPDFYLINTYVPNSGAE-LKRLDFRHGFNEAF---YEYVNQLSQQKSI 140
Query: 72 FVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + P F E R F S L++SG F D FR +P++
Sbjct: 141 VWCGDLNVAHQEIDLKNPQSNHHHPGFTDEE-RFDF-SKLLKSG--FTDTFRYFYPDQEH 196
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
+Y+ W A Q N G RID+ + + Q D + H+
Sbjct: 197 SYSWWSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIHD 236
>gi|409122308|ref|ZP_11221703.1| exodeoxyribonuclease [Gillisia sp. CBA3202]
Length = 259
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR + D +F + ++Y P + + R++FKLQF Q+ + L Q + +
Sbjct: 89 MDFEGRNIRVDFENFSVMSLYLPSGTNIN--RLEFKLQFMADFQRYVDILKTQIPNLIIC 146
Query: 75 GDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NI AID R F E R W + +SG F D FR + E + Y+
Sbjct: 147 GDYNICHEAIDIHDPVRLKNTSGFLPVE-RKWIDGFM-KSG--FIDTFRYFNKEATDQYS 202
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+ L +
Sbjct: 203 WWSYRAGARGNNKGWRIDYNLVS 225
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D+EGR + + F Y P A + R+ +++ + K++ L + + + +
Sbjct: 203 KHDNEGRVITAEFEKFYFVTAYIPNA-GDKLKRLSYRVGEWDPDFKKYLKSLDENKPVVL 261
Query: 74 VGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID + + F K E R F S+L ++ D FR +P+++EAY
Sbjct: 262 CGDLNVAHKEIDIANPKTNQRSAGFTKEE-RESFSSLLEDN--KLIDSFRDLYPDKKEAY 318
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W + A + N G R+D+ L +
Sbjct: 319 SYWSYRSNARKNNKGWRLDYFLVS 342
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK + L + D EGR + ++ F L NVY P + E R+ +++++
Sbjct: 64 GVAIFSKTKPLSVAYDMGIAHHDKEGRIICAEYKDFYLVNVYTPNSKRE-LERLSYRMEW 122
Query: 54 ---FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
F K E + + + V GDLN+A ID R +AG F E
Sbjct: 123 EDDFRAYLKNLE----KTKPVIVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--M 174
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+ L++SG F D FR +P AY+ W A + N G RID+ LC+
Sbjct: 175 TQLLDSG--FTDTFRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|398341999|ref|ZP_10526702.1| exodeoxyribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 254
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V+ D+G F ++ VY P + D +R K++F K + L + + +
Sbjct: 87 EFDKEGRSVLADYGDFAIWTVYFPSGTTGD-IRQAAKMRFLDEFLKLSKKLRKKHPNLIL 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD+NIA D D + AKN E R W L +SG + D FR +PE++E Y
Sbjct: 146 CGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KSG--WIDSFRELYPEKQE-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDHILC 151
+ W GA N G RID+
Sbjct: 201 SWWTFRAGARGNNKGWRIDYFFV 223
>gi|429216366|ref|YP_007174356.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
gi|429132895|gb|AFZ69907.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
Length = 245
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 83/204 (40%), Gaps = 46/204 (22%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR + + F + N Y P A T R+ +KL F ++K FL + +
Sbjct: 82 EFDSEGRNITLEFDEFYVINSYFPNAQHGLT-RLDYKLSFNSQMEK---FLSSLKKPKII 137
Query: 74 VGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD N+A ID P F + E R W L E G + D FR H E Y
Sbjct: 138 CGDFNVAHKEIDIARPKDNVNNPGFTQQE-RDWMTHFL-ELG--YIDAFRIFHKEPNR-Y 192
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W A + N G RID+ + + + + V +CDI+
Sbjct: 193 SWWSYRFHAREKNIGWRIDYCVVSSDIVKR-------------VKDCDIM---------- 229
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL 212
++ GSDHAPVY+ +
Sbjct: 230 ---------DKIMGSDHAPVYLII 244
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 89/218 (40%), Gaps = 62/218 (28%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F L NVY P A D R+++++ + F K L + +
Sbjct: 86 DPEGRVLTLEFPAFFLVNVYTPNA-RRDLSRLEYRIAWEERFRAYLKE----LDARKPVV 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG F E R L+E+G F D FR +P+R
Sbjct: 141 VCGDLNVAHREIDLKNAKFNRGNAG--FTDEEREAMTR--LLEAG--FTDTFRHFYPDRT 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA---GPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
+AYT W + N G RID+ L + P L D LID
Sbjct: 195 DAYTWWSFMPKVRERNIGWRIDYFLVSARLAPYLE------------------DALID-- 234
Query: 183 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCL---GEVPE 217
+ + GSDH PV + + GE PE
Sbjct: 235 ---------------SGIMGSDHCPVGLLMRDPGEQPE 257
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 21/163 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L N Y P R + R+Q++ F L K L + +
Sbjct: 89 DKEGRVITLEYEKFFLVNTYTPNSQRGLTRLDYRMQWEEDFRSYLLK-----LDSLKPVI 143
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG F E ++L+ SG F D FR +P+++
Sbjct: 144 LCGDLNVAHQEIDIKNPAANRRNAG--FTDEEREK--MTILLNSG--FIDTFRYFYPDKK 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+AYT W A + N G R+D+ + + D Q H+ V
Sbjct: 198 DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEV 240
>gi|392401590|ref|YP_006438202.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
gi|390609544|gb|AFM10696.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
Length = 270
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + G ++F Y P D + KL F+ + L + +R+ G
Sbjct: 105 DHEGRVLGVEAGDLVIFGNYFPNGGKSDAAWRE-KLVFYDHFHQYIAALRKKKKRVLFTG 163
Query: 76 DLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + F E R W ++ ++ + DVFRS++PE +YT
Sbjct: 164 DLNVAHNPIDLARPKENEKHVGFLPEE-RAWVDRLVADN---WVDVFRSRYPET-VSYTW 218
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W + A + N G RID+ + P + +++ N
Sbjct: 219 WQMQSRARERNIGWRIDYFIVDKPLYPKVREIRHLN 254
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-------QG 68
D EGR + + F + VY P A D R+ ++L+ WE C +
Sbjct: 87 DPEGRIITLEFPSFYVVTVYTPNA-KRDLSRLPYRLE--------WEDAFCAYLCALDRE 137
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREA 127
+ + GDLN+A ID +A + + F R+ + E F D FR+ HP +
Sbjct: 138 KPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLAAGFVDTFRALHPNVTDK 197
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YT W + G + N G RID+ L +
Sbjct: 198 YTWWSNMPGVRERNIGWRIDYFLVS 222
>gi|444912439|ref|ZP_21232603.1| Exodeoxyribonuclease III [Cystobacter fuscus DSM 2262]
gi|444717021|gb|ELW57858.1| Exodeoxyribonuclease III [Cystobacter fuscus DSM 2262]
Length = 262
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSE--DTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D+EGR + G + N Y P + + D R+ FKL F+ L + E L G RI
Sbjct: 88 EMDTEGRLQVARFGRLTVVNCYFPNGNGKERDNSRVPFKLAFYRRLFELLEKGLRDGERI 147
Query: 72 FVVGDLNIAPAAID-------RCDAGPDF-AKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
VVGD N A ID R +G + EF W R+ + D FR H E
Sbjct: 148 VVVGDFNTAHQEIDLARPKDNRETSGFLLEERQEFCRWLRA-------GWVDTFR--HFE 198
Query: 124 RREA-YTCWPSNTGAEQFNYGTRIDHILCA 152
+ Y+ W G + N G R+D++L +
Sbjct: 199 KGAGHYSWWSQRFGVRERNVGWRLDYVLAS 228
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK++++ I ++EGR + + F L VY P A SE VR+ +++
Sbjct: 189 GVSIFSKEKVISIKKGIDIAEHENEGRVLTAEFDKFYLVVVYVPNAGSE-LVRLDYRVNS 247
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESG 110
F + + L + + + GDLN+A ID + + F I R S +ESG
Sbjct: 248 FDKDFQNYLNQLKLKKNVILCGDLNVAHQEIDIANPKSNRNSPGFTIEERNSFSKFLESG 307
Query: 111 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151
+ D FR +PE + Y+ W T A + N G RID+ +
Sbjct: 308 --WIDTFRFLYPETIK-YSWWSVRTKARESNIGWRIDYFVV 345
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
+ EGR + + + NVY P + D R++ +LQ+ V K+ L + +
Sbjct: 85 EDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKK----LNSRKAVI 139
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYT 129
+ GDLN+A A ID + P+ + F I R + L+ SG F D FR +P + AYT
Sbjct: 140 LCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQEGAYT 197
Query: 130 CWPSNTGAEQFNYGTRIDHILCA 152
W + N G RID+ + +
Sbjct: 198 WWSYMNKVRERNIGWRIDYFIVS 220
>gi|419640953|ref|ZP_14172866.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23357]
gi|380618487|gb|EIB37613.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23357]
Length = 252
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYVDFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|436837117|ref|YP_007322333.1| exodeoxyribonuclease III Xth [Fibrella aestuarina BUZ 2]
gi|384068530|emb|CCH01740.1| exodeoxyribonuclease III Xth [Fibrella aestuarina BUZ 2]
Length = 262
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLCQG 68
L D EGR + TD + N Y P + + V++QF +FF +Q L Q
Sbjct: 85 LAHYDCEGRILRTDFDDITVLNCYFPSGTTGELRQGVKMQFLAEFFDYVQD-----LRQS 139
Query: 69 R-RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKH 121
R + VVGD NIA D D P KN E R W F D FR+K+
Sbjct: 140 RPNLIVVGDYNIAHTERDIHD--PARNKNTTGFLPEERAWMDRWF---ASGFVDAFRTKN 194
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
P+ E Y+ W GA N G RID+I A
Sbjct: 195 PDAVE-YSWWSYRAGARANNKGWRIDYISVA 224
>gi|319956878|ref|YP_004168141.1| exodeoxyribonuclease iii [Nitratifractor salsuginis DSM 16511]
gi|319419282|gb|ADV46392.1| exodeoxyribonuclease III [Nitratifractor salsuginis DSM 16511]
Length = 258
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
+ I EGR FNVY P + R+ +KL+F+ + E L +G I
Sbjct: 89 VDILKEGRINEIHFDKIAFFNVYFPNGKRNEE-RLAYKLEFYDRFFEHIEGLRKKGMSII 147
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD+N A ID + + F R W L+E G + D FR H + E Y
Sbjct: 148 FCGDVNTAHRPIDLARPKENEGISGFLPVERAWI-DKLIEHG--YIDTFRYIHGDEPERY 204
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W T A + N G RID+ + DL+ + + DIL
Sbjct: 205 SWWSMRTKARERNVGWRIDYFFVS-------KDLKE------RILDADIL---------- 241
Query: 189 APRWKGGMSTRLEGSDHAPVYMCLGE 214
+EGSDHAPV + L +
Sbjct: 242 ---------AEIEGSDHAPVSLRLAK 258
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
++EGR + + + + +Y P A D R+ ++LQ+ ++ L Q +F G
Sbjct: 86 ENEGRVITLEFETYYVVTMYTPNA-KRDLSRLPYRLQWEKAAREYLTLLATQKPVVFC-G 143
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN+A ID R + G +E R F +L E+G F D FR +P+ +A+T W
Sbjct: 144 DLNVAHQPIDVRNDRANVGNSGFTDEERAEFGKLL-EAG--FVDTFRHFYPDDEDAFTWW 200
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
N G RID+ L + + D H+ V
Sbjct: 201 SYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVL---------------------- 238
Query: 192 WKGGMSTRLEGSDHAPVYMCLGEVP 216
GSDH P+ +CL P
Sbjct: 239 ----------GSDHCPIELCLDLQP 253
>gi|419694359|ref|ZP_14222326.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9872]
gi|380670894|gb|EIB86134.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9872]
Length = 252
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKVNTNTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|323306058|gb|EGA59792.1| Apn2p [Saccharomyces cerevisiae FostersB]
Length = 404
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 106/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 113 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 172
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 173 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 232
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 233 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 292
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 293 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 320
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 321 SDLDIVDDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 373
>gi|408671145|ref|YP_006871216.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
gi|407240967|gb|AFT83850.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
Length = 255
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYIENLIDSLVNGGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W S L + F +F +K P YT
Sbjct: 146 DFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------EKVMGSDHCPVFLELADV 253
>gi|332666113|ref|YP_004448901.1| exodeoxyribonuclease III [Haliscomenobacter hydrossis DSM 1100]
gi|332334927|gb|AEE52028.1| exodeoxyribonuclease III Xth [Haliscomenobacter hydrossis DSM 1100]
Length = 256
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR-R 70
+ K D EGR + +D G + N Y P + D VR +FK+ F K W L + R +
Sbjct: 87 MAKYDDEGRILRSDFGDLTILNCYFPSGTTGD-VRQEFKMVFLEDFFK-WAHELQKERPK 144
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ V+GD NIA D D P KN E R W S SG F D FR +P++
Sbjct: 145 LIVLGDYNIAHTERDIHD--PRGNKNSSGFLPEEREWL-SKWFNSG--FTDAFRFLNPDK 199
Query: 125 REAYTCWPSNTGAEQFNYGTRIDH 148
E Y+ W GA + N G RID+
Sbjct: 200 VE-YSWWSFRAGARKNNKGWRIDY 222
>gi|45657327|ref|YP_001413.1| exodeoxyribonuclease [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|294828126|ref|NP_712697.2| exodeoxyribonuclease [Leptospira interrogans serovar Lai str.
56601]
gi|386074520|ref|YP_005988837.1| exodeoxyribonuclease [Leptospira interrogans serovar Lai str. IPAV]
gi|417764317|ref|ZP_12412286.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|418711951|ref|ZP_13272699.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 08452]
gi|421083950|ref|ZP_15544816.1| exodeoxyribonuclease III [Leptospira santarosai str. HAI1594]
gi|421102157|ref|ZP_15562765.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600565|gb|AAS70050.1| exodeoxyribonuclease [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|293385973|gb|AAN49715.2| exodeoxyribonuclease [Leptospira interrogans serovar Lai str.
56601]
gi|353458309|gb|AER02854.1| exodeoxyribonuclease [Leptospira interrogans serovar Lai str. IPAV]
gi|400353466|gb|EJP05637.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|410367985|gb|EKP23365.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433497|gb|EKP77842.1| exodeoxyribonuclease III [Leptospira santarosai str. HAI1594]
gi|410791530|gb|EKR85203.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 08452]
Length = 254
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|134093450|ref|YP_001098525.1| nuclease [Herminiimonas arsenicoxydans]
gi|133737353|emb|CAL60396.1| Putative Nuclease [Herminiimonas arsenicoxydans]
Length = 259
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D G+ + +VY P S + R Q K +F V L QGR +
Sbjct: 88 EFDAEGRYVQCDFGNLSVISVYCPSGSSGEE-RQQAKFRFMDVFLPHLLELKSQGREFVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP-ERREAY 128
GD NIA ID + + + F R W + E G DV+R HP E Y
Sbjct: 147 CGDWNIAHNEIDLKNYKGNRKNSGFLPEEREWLTRVFDEVG--LVDVYRRLHPGTTEECY 204
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCL 156
T W + A N G RID+ + A P L
Sbjct: 205 TWWSNRGQAYAKNVGWRIDYQV-ATPSL 231
>gi|417770005|ref|ZP_12417918.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Pomona]
gi|418682137|ref|ZP_13243357.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418703940|ref|ZP_13264822.1| exodeoxyribonuclease III [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418730649|ref|ZP_13289143.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12758]
gi|400326147|gb|EJO78416.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|409948022|gb|EKN98013.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Pomona]
gi|410766424|gb|EKR37109.1| exodeoxyribonuclease III [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410774858|gb|EKR54862.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12758]
gi|455670418|gb|EMF35400.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455789000|gb|EMF40941.1| exodeoxyribonuclease III [Leptospira interrogans serovar Lora str.
TE 1992]
Length = 254
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWIDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|419689247|ref|ZP_14217547.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380663551|gb|EIB79185.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
Length = 252
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLNKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|374631714|ref|ZP_09704088.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
gi|373525544|gb|EHP70324.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
Length = 245
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 81/203 (39%), Gaps = 44/203 (21%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ DSEGR + + F + N Y P + E R+QFKL F Q EF+ + + V
Sbjct: 82 EFDSEGRVITLEFPDFYVVNAYFPNS-GEGLRRLQFKLSFDEAFQ---EFVGSLRKPLVV 137
Query: 74 VGDLNIAPAAID--RCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N+A ID R + D A E R WF L+ F D FR E Y+
Sbjct: 138 CGDFNVAHEEIDIARPEENEDHAGFTREEREWFHKFLLSG---FVDTFRMFVKEGGH-YS 193
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ L + + V +IL D
Sbjct: 194 WWSYRTKARERNVGWRIDYCLVSAE-------------LAGRVRRANILED--------- 231
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
+ GSDHAP+ + L
Sbjct: 232 ----------MMGSDHAPITLQL 244
>gi|384440911|ref|YP_005657214.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni M1]
gi|307747194|gb|ADN90464.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni M1]
Length = 198
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 32 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYVDFLVYLDKLLKDGFEIIICG 90
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 91 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 147
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 148 SYRMKARERNVGWRIDYFFIS 168
>gi|456825500|gb|EMF73896.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. LT1962]
Length = 254
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|417762544|ref|ZP_12410533.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000624]
gi|417775062|ref|ZP_12422922.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000621]
gi|417783614|ref|ZP_12431332.1| exodeoxyribonuclease III [Leptospira interrogans str. C10069]
gi|418671514|ref|ZP_13232865.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000623]
gi|418692233|ref|ZP_13253312.1| exodeoxyribonuclease III [Leptospira interrogans str. FPW2026]
gi|400358023|gb|EJP14142.1| exodeoxyribonuclease III [Leptospira interrogans str. FPW2026]
gi|409941537|gb|EKN87165.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000624]
gi|409953238|gb|EKO07739.1| exodeoxyribonuclease III [Leptospira interrogans str. C10069]
gi|410575159|gb|EKQ38181.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000621]
gi|410581473|gb|EKQ49283.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000623]
Length = 254
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|394989998|ref|ZP_10382830.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
gi|393790263|dbj|GAB72469.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
Length = 259
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ +ID+EGR + D G + ++Y P S + R K +F L +G+ +
Sbjct: 85 IAEIDAEGRYLQADFGKLSVISLYLPSGSSGEE-RQAAKFRFLDYFAPHLVELKAEGQEV 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-E 126
+ GD NIA ID + + + F R W + E G + D++R HPE E
Sbjct: 144 VLCGDWNIAHKEIDLKNWKSNQKNSGFLPAERTWMTKVFDELG--WVDIYRQLHPEATGE 201
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILC 151
AYT W + A N G RID+ +
Sbjct: 202 AYTWWSNRGQAWAKNVGWRIDYQIA 226
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + + L Y P + + R+++++++ + K + L + + + + G
Sbjct: 89 DQEGRLITAEFKNHFLVVCYTPNSQRQ-LARLEYRMKWENDF-KNYLLKLTESKPVILCG 146
Query: 76 DLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + + F +E + + S L+E+G F D FR +P++++AY+
Sbjct: 147 DLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRYLYPDKKDAYSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
W + + N G RID+ L + ++ D + H
Sbjct: 203 WSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|421097644|ref|ZP_15558324.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200901122]
gi|410799194|gb|EKS01274.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200901122]
Length = 254
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ F L+N Y P + + VR K++F + QK Q I +
Sbjct: 88 FDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAAKMKFLDLFQKEATKRKKQQPNIILC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L E G + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWLTKFL-EKG--WVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|307353485|ref|YP_003894536.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156718|gb|ADN36098.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 254
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 41/203 (20%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
++DSEGR +I ++ F L+++Y P R+QFK+ F+ + L G+ + +
Sbjct: 87 ELDSEGRIIIAEYSDFNLYDIYFPNGKMSKE-RLQFKMDFYEECLRHAVSDLDSGKNVII 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+N A ID + + F R W +L F D FR E Y+
Sbjct: 146 CGDVNTAHKEIDLARPKENSKVSGFLEIERKWIDRLL---DAGFKDSFRMFTSEGG-YYS 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W +GA + N G RID+ + + ++ V IL
Sbjct: 202 WWDLKSGARERNVGWRIDYFFVS-------------DGISGRVKSASIL----------- 237
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
+++EGSDH PV + L
Sbjct: 238 --------SQVEGSDHCPVELEL 252
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 43/198 (21%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVG 75
EGRC+ + F L NVY P + D R++ +L H ++ ++ L + + + G
Sbjct: 88 EGRCITLEFEDFYLLNVYTPNS-KRDLSRLEDRL---HWEERVRAYIKELDEIKPVIYCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID + + + F R S L+ G F D FR +PE+ ++YT W
Sbjct: 144 DLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEG--FVDSFRHLYPEKDQSYTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
+ + N G RID+ + + D
Sbjct: 202 YMSKVRERNIGWRIDYFIVSDRLKDSLKD------------------------------- 230
Query: 193 KGGMSTRLEGSDHAPVYM 210
GM T + GSDH PVY+
Sbjct: 231 -AGMHTDVLGSDHCPVYI 247
>gi|320536290|ref|ZP_08036333.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
gi|320146850|gb|EFW38423.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
Length = 258
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT-VRIQFKLQFFHVLQKRWEFLLCQGR 69
+L + DSEGR + D G + + Y P +S+D R+ +KL+F +++ + L +G+
Sbjct: 88 DLEEFDSEGRVIAADFGKLTVISAYFP--NSQDAGARLAYKLEFCAAMREFCDNLQKEGQ 145
Query: 70 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ + GD NIA ID + P + E R W M V +G + D FR E
Sbjct: 146 DVILCGDYNIAHKPIDLANPKTNEKNPGYLPEE-REW---MDVFTGAGYVDTFRHFCAE- 200
Query: 125 REAYTCWPSNTGAEQFNYGTRIDH 148
E YT W A + N G RID+
Sbjct: 201 PEHYTWWTYRFKARERNVGWRIDY 224
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFK 50
G F+K E L++ D EGR + + F VY P + E R+ F+
Sbjct: 64 GTAIFTKKEPLRVFYGLSVAEHDQEGRVITLEFEQFYFITVYTPNSQPELARLAYRMSFE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSM 105
F + ++ L Q + + GDLN+A ID + P F+ E R F ++
Sbjct: 124 EAFLNYVKN-----LDQEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEE-RGKFTTV 177
Query: 106 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
L ESG F D FR +PE+ AY+ W A N G RID+ + + + D + H
Sbjct: 178 L-ESG--FVDTFRHFYPEKEGAYSWWSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIH 234
>gi|398333589|ref|ZP_10518294.1| exodeoxyribonuclease III [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 256
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N Y P + D VR K++F + QK + I +
Sbjct: 90 FDKEGRSIYLEYSNFALWNSYFPSGTTGD-VRQAAKMKFLDLFQKEAIKRRKKQPNIILC 148
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + + D FR +PE++E Y+
Sbjct: 149 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWLSGFLDQ---GWVDTFRYLYPEKQE-YSW 204
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 205 WTFRAGARAKNKGWRIDYFFVT 226
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
DSEGR + ++ F L N Y P A E R+++++++ + + L + + + G
Sbjct: 86 DSEGRVITVEYEPFYLVNCYTPNAQRE-LARLEYRMKWEDDF-RAYLMSLDAKKPVVLCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSN 134
DLN+A ID + + F R+ + E G F D FR+ +P+ AYT W
Sbjct: 144 DLNVAHQEIDLKNPKTNRRNAGFSDEERAKMTELLAGGFVDTFRALYPDVTGAYTWWSYL 203
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHD 161
A N G RID+ + + HD
Sbjct: 204 RRARDTNAGWRIDYFIVSERLRGAVHD 230
>gi|419643553|ref|ZP_14175271.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni ATCC
33560]
gi|380621081|gb|EIB39916.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni ATCC
33560]
Length = 252
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYADFLVYLNKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|456989136|gb|EMG23986.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 267
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 215
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 216 WTFRAGARAKNKGWRIDYFFVTE---ELKKNVKSHS 248
>gi|442320915|ref|YP_007360936.1| exodeoxyribonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488557|gb|AGC45252.1| exodeoxyribonuclease III [Myxococcus stipitatus DSM 14675]
Length = 260
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D EGR + G + NVY P + +D RI FKL F+ L E L G R+
Sbjct: 87 EMDVEGRLQMARFGKLTVANVYFPNGNGKDRDLSRIPFKLSFYRRLFSALEKPLRDGGRV 146
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRI--------WFRSMLVESGGSFFDVFRSKHPE 123
V+GD N A ID + + FR W R+ V D FR H +
Sbjct: 147 LVMGDFNTAHQDIDLARPRENRETSGFRPEEREELDRWLRAGWV-------DTFR--HFQ 197
Query: 124 RREA-YTCWPSNTGAEQFNYGTRIDHILCA 152
R Y+ W G + N G RID++L +
Sbjct: 198 RDGGHYSWWSQRFGVREKNIGWRIDYVLAS 227
>gi|393788369|ref|ZP_10376499.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
gi|392656042|gb|EIY49683.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
Length = 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D G + +VY P S D R FK+ + QK L + + G
Sbjct: 89 DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELQKSRPNLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID D + + F R W L F D FR+ +PE++E YT W
Sbjct: 148 DYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPC 155
+ N G RID+ + + P
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|51598785|ref|YP_072973.1| exodeoxyribonuclease III [Borrelia garinii PBi]
gi|51573356|gb|AAU07381.1| exodeoxyribonuclease III [Borrelia garinii PBi]
Length = 255
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W S L + F +F +K P YT
Sbjct: 146 DFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR ++ + F L NVY P + + R+ ++ + L + L Q + + G
Sbjct: 89 DQEGRVLVAEFESFYLLNVYVPNS-GDGLARLDYRQTWDAALLAYLQQLQNQ-KPVIACG 146
Query: 76 DLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D N+A AID ++ K+ + I S E+G F D FR HPE AY+ W
Sbjct: 147 DFNVAHQAIDIARPKANYNKSAGYTQTEIDGFSRFTEAG--FIDSFRHFHPET-VAYSWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
GA N G RID++L + L + D
Sbjct: 204 SYRAGARAKNIGWRIDYVLTSQALLPRIQD 233
>gi|153951075|ref|YP_001397480.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
gi|152938521|gb|ABS43262.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
Length = 259
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYTDFLVYLNKLLKDGFEIIICG 151
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFVDTFREINGEIKEKYSWW 208
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 209 SYRMKARERNVGWRIDYFFIS 229
>gi|430807985|ref|ZP_19435100.1| exodeoxyribonuclease III [Cupriavidus sp. HMR-1]
gi|429499679|gb|EKZ98088.1| exodeoxyribonuclease III [Cupriavidus sp. HMR-1]
Length = 258
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 11/149 (7%)
Query: 7 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66
F DE D+EGR V + H + +VY P S + ++ K +F L
Sbjct: 84 FGNDEF---DAEGRYVEVQYPHLAVISVYVPSGSSSEERQLA-KFRFMEAFLPHLLELKA 139
Query: 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 122
GR I + GD+NIA ID + + + F R W + G + DVFR P
Sbjct: 140 SGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDNHG--YVDVFRQLDP 197
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILC 151
R E YT W + A N G RID+ L
Sbjct: 198 -RPEQYTWWSNRGQAYAKNVGWRIDYHLT 225
>gi|399573808|gb|AFP49243.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
gi|399573810|gb|AFP49244.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 228
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 95 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 152
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 153 GDLNVIRGEMDTCNV 167
>gi|386853934|ref|YP_006203219.1| ExoA protein [Borrelia garinii BgVir]
gi|365193968|gb|AEW68866.1| ExoA [Borrelia garinii BgVir]
Length = 255
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNSGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W S L + F +F +K P YT
Sbjct: 146 DFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F ++ + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFVV-------------NEFFKRNIKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRR 70
K D EGR + + F L VY P A + VR+ +++++ F K E +
Sbjct: 183 KHDKEGRVITAEFDKFYLVAVYVPNA-GKKLVRLDYRMEWDKDFRAYLKELE----AKKH 237
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 127
+ + GD+N+A ID + + F R + L+ESG F D FR +P+++ A
Sbjct: 238 VVLCGDMNVAHQEIDLANPKTNKKNAGFTQEERDGFTALLESG--FVDSFRHLYPDKKGA 295
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YT W A N G R+D+ + +
Sbjct: 296 YTFWTYMMNARAKNVGWRLDYFILS 320
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 53/209 (25%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + ++ + Y P + SE R+ +++Q+ F + K+ L + +
Sbjct: 86 DQEGRVITLSYPNYYVVTCYTPNSKSE-LKRLDYRMQWEDDFQLYLKK----LDSEKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID + AG F+K E R+ F ++L F D FR +P+
Sbjct: 141 LCGDLNVAHENIDLKNWKTNQLSAG--FSKEE-RMKFSALL---DAGFIDTFRYFYPDLE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
AYT W A + N G RID+ C L H+ E IL D
Sbjct: 195 GAYTWWNYRFNARKTNAGWRIDY-FCVSTRLQD------------HLQEARILDD----- 236
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ GSDH PV + L E
Sbjct: 237 --------------IVGSDHCPVELILKE 251
>gi|218130897|ref|ZP_03459701.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
gi|217987241|gb|EEC53572.1| exodeoxyribonuclease III [Bacteroides eggerthii DSM 20697]
Length = 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
DSEGR + D+G + +VY P S D R FK+ + ++ L ++ + G
Sbjct: 89 DSEGRFMRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFRQYVVELQRTRPKLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID D + + F R W L E F D FR HP+++E YT W
Sbjct: 148 DYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDKQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + P D + N H + C ++++
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVNEPVRPMLKDARILN-DAVHSDHCPMMLE 251
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|451811792|ref|YP_007448247.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776950|gb|AGF47949.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 270
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA--DSEDTVRIQFKLQFFHVLQKR 60
GLED + IDSEGR + D + NVY P D ++ F +F L++
Sbjct: 92 GLEDKN------IDSEGRVIRIDWEKISIINVYFPSGSNDERQKAKLIFLQKFELYLKEI 145
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDV 116
+ + R + + GD NIA +D + + K F R W ++ + + DV
Sbjct: 146 YSESILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDV 203
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
FR HP +E YT W + + + N G RID+
Sbjct: 204 FRKLHPH-QEQYTWWSNRARSWERNVGWRIDY 234
>gi|418670214|ref|ZP_13231586.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421119287|ref|ZP_15579611.1| exodeoxyribonuclease III [Leptospira interrogans str. Brem 329]
gi|421136683|ref|ZP_15596781.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410019141|gb|EKO85968.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347917|gb|EKO98768.1| exodeoxyribonuclease III [Leptospira interrogans str. Brem 329]
gi|410753985|gb|EKR15642.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|418724843|ref|ZP_13283627.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12621]
gi|409961740|gb|EKO25483.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12621]
Length = 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 88 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 147 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + ++ F L NVY P A D R+ +L + L + L + + + GDL
Sbjct: 88 EGRIITLEYEDFYLVNVYTPNA-QRDLARLPLRLTWEEHLASYLQDLNSK-KPVVYCGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPSNTG 136
N+A ID +A + + F R+ E S F D FR KHP + +T W
Sbjct: 146 NVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGFVDSFRYKHPNETDHFTWWSYMNK 205
Query: 137 AEQFNYGTRIDHILCA 152
+ N G RID+ + +
Sbjct: 206 VRERNIGWRIDYFIVS 221
>gi|397641752|gb|EJK74832.1| hypothetical protein THAOC_03468, partial [Thalassiosira oceanica]
Length = 599
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-----FFHVLQKRWEFLLCQGRR 70
D EGR I + F L N Y P + + R++++ + F H ++ L G+
Sbjct: 423 DGEGRICIAEFPLFYLVNTYVPNS-GQKLDRLKYRTEEWDTDFLHKMRS----LEDDGKP 477
Query: 71 IFVVGDLNIAPAAIDRCDAG----PDFAKN--EFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ +GDLN+A D + G P A E R F L G F D FR HPE
Sbjct: 478 VIWLGDLNVAFNEKDTWNEGAKHLPKSAGTTPEERASFDRQL---GAGFVDAFRHLHPEG 534
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
R Y+ W G N G R+D+ +C+
Sbjct: 535 RGHYSYWSQRAGNRGPNKGLRLDYFICS 562
>gi|257092320|ref|YP_003165961.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044844|gb|ACV34032.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 266
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + D G + +Y P S + R + K +F ++ L GR + V
Sbjct: 88 EFDREGRYLRADFGALSVVCLYQPSGSSSEQ-RQEAKFRFMALIYPHLLELAASGRDVVV 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER-REAY 128
GD NIA ID + + + F R W +L E G + DV+R HPE E+Y
Sbjct: 147 CGDWNIAHQEIDLKNWRSNRRNSGFLPEERAWVSRLLNEGG--WCDVYRRLHPESTEESY 204
Query: 129 TCWPSNTGAEQFNYGTRIDHILC 151
T W + A N G R+D+ L
Sbjct: 205 TWWSNRGQAWAKNVGWRLDYQLA 227
>gi|429463013|ref|YP_007184476.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338527|gb|AFZ82950.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 261
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA--DSEDTVRIQFKLQFFHVLQKR 60
GLED + IDSEGR + D + NVY P D ++ F +F L++
Sbjct: 83 GLEDKN------IDSEGRVIRIDWEKISIINVYFPSGSNDERQKAKLIFLQKFELYLKEI 136
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDV 116
+ + R + + GD NIA +D + + K F R W ++ + + DV
Sbjct: 137 YSESILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDV 194
Query: 117 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
FR HP +E YT W + + + N G RID+
Sbjct: 195 FRKLHPH-QEQYTWWSNRARSWERNVGWRIDY 225
>gi|419627919|ref|ZP_14160809.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23263]
gi|380606030|gb|EIB25965.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23263]
Length = 252
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLNFKMKFYTDFLVYLNKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + E +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFVDTFREINGEIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
DSEGR V + F L N Y P + + R+ +++ + + + L + + + + G
Sbjct: 320 DSEGRLVTAEFDSFYLLNAYVPNS-GDGLKRLSYRVSQWDLSLSNYMKELEKSKPVILNG 378
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN A ID R +AG +E R F + + G F D FR +HP+ Y
Sbjct: 379 DLNCAHQEIDIYNPAGNRRNAG---FTDEERQSFETNFLSRG--FVDSFRKQHPDVV-GY 432
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
T W G + N G R+D+ L + Q HD
Sbjct: 433 TYWGYRHGGRKTNKGWRLDYFLVSESISDQVHD 465
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+E+F D EGR + + + L N Y P + + R+ +++++ VL + +
Sbjct: 81 GIEEF--------DDEGRTITLEFPDYYLINSYTPNSQPK-LKRVDYRMRYDDVL-REYM 130
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVF 117
L + + + GDLN+A ID + P F+ E R F S L++SG F D F
Sbjct: 131 LQLSADKPVILCGDLNVAHEEIDLKNPKTNHKNPGFSDQE-RDKF-SELLDSG--FIDSF 186
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA--GPCLHQKHDLQSHNFVTCHVNEC 175
RS HP+ + Y+ W A + N G RID+ + + G L Q D+ + + + H C
Sbjct: 187 RSLHPQEIK-YSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADILTDIYGSDH---C 242
Query: 176 DILID 180
I +D
Sbjct: 243 PIELD 247
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + + L Y P + + R+++++++ + K + L + + + + G
Sbjct: 89 DQEGRLITAEFENHFLVVCYTPNSQRQ-LARLEYRMKWENDF-KNYLLKLTESKPVILCG 146
Query: 76 DLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + + F +E + + S L+E+G F D FR +P++++AY+
Sbjct: 147 DLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRYLYPDKKDAYSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
W + + N G RID+ L + ++ D + H
Sbjct: 203 WSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|418744526|ref|ZP_13300882.1| exodeoxyribonuclease III [Leptospira santarosai str. CBC379]
gi|418752145|ref|ZP_13308417.1| exodeoxyribonuclease III [Leptospira santarosai str. MOR084]
gi|409967874|gb|EKO35699.1| exodeoxyribonuclease III [Leptospira santarosai str. MOR084]
gi|410794977|gb|EKR92877.1| exodeoxyribonuclease III [Leptospira santarosai str. CBC379]
Length = 254
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR--IF 72
D EGR + ++ F L+N Y P + D VR K++F + QK E + + R+ I
Sbjct: 88 FDQEGRSIYLEYPEFALWNCYFPSGTTGD-VRQAAKMKFLDLFQK--EAIQRKKRQPNII 144
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD+NIA D D + + F R W L E+G + D FR +PE++E Y
Sbjct: 145 LCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWLTQFL-ENG--WVDTFRYLYPEKQE-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W GA N G RID+
Sbjct: 201 SWWTFRAGARAKNKGWRIDYFFVT 224
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
+ EGR + ++ F + VY P + D R+ +L++ L + + L Q + + G
Sbjct: 86 EDEGRIITLEYERFYVVTVYTPNS-KRDLARLDERLEWEDNL-RAYLIELDQQKPVIYCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A AID +A P+ + F R ++L+ SG F D FR+ +P+ +T W
Sbjct: 144 DLNVAHEAIDLKNAKPNVGNSGFTNEERGKMTLLLNSG--FTDTFRAMYPQEDNRFTWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCA 152
+ N G RID+ + +
Sbjct: 202 YMNKVRERNIGWRIDYFIVS 221
>gi|359686334|ref|ZP_09256335.1| exodeoxyribonuclease III [Leptospira santarosai str. 2000030832]
Length = 256
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR--IF 72
D EGR + ++ F L+N Y P + D VR K++F + QK E + + R+ I
Sbjct: 90 FDQEGRSIYLEYPEFALWNCYFPSGTTGD-VRQAAKMKFLDLFQK--EAIQRKKRQPNII 146
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD+NIA D D + + F R W L E G + D FR +PE++E Y
Sbjct: 147 LCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWLTQFL-EKG--WVDTFRYLYPEKQE-Y 202
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W GA N G RID+
Sbjct: 203 SWWTFRAGARAKNKGWRIDYFFVT 226
>gi|418700055|ref|ZP_13261000.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bataviae
str. L1111]
gi|421116292|ref|ZP_15576680.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410012296|gb|EKO70399.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410760927|gb|EKR27120.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bataviae
str. L1111]
Length = 267
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWIDTFRYLYPDKQE-YSW 215
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 216 WTFRAGARAKNKGWRIDYFFVT 237
>gi|419589231|ref|ZP_14125035.1| exodeoxyribonuclease III [Campylobacter coli 317/04]
gi|380567993|gb|EIA90482.1| exodeoxyribonuclease III [Campylobacter coli 317/04]
Length = 252
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P +D R+ FK++F+ + LL G I + G
Sbjct: 86 DEEGRVLEHRFKNIALFNIYFPNG-QKDEERLSFKMKFYADFLVYLDKLLKDGFEIIICG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + F R W +L F D FR + + +E Y+ W
Sbjct: 145 DVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLL---KLGFIDTFREINGDIKEKYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + N G RID+ +
Sbjct: 202 SYRMKARERNVGWRIDYFFIS 222
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 77
EGR + ++ +F L NVY P A D R+ +L + L + L + + + GDL
Sbjct: 88 EGRIITLEYQNFYLVNVYTPNA-QRDLARLPLRLTWEDRLAGYLQDLNSK-KPVVYCGDL 145
Query: 78 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPSNTG 136
N+A ID +A + + F R+ E S F D FR KHP + +T W
Sbjct: 146 NVAHTEIDLKNAKSNVGNSGFTYEERAKFSELLASGFVDSFRYKHPNETDHFTWWSYMNK 205
Query: 137 AEQFNYGTRIDHILCA 152
+ N G RID+ + +
Sbjct: 206 VRERNIGWRIDYFIVS 221
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D+EGR + + + L NVY P + E R+++++++ F + K+ E + + +
Sbjct: 89 DNEGRVITLEFDQYFLVNVYTPNSKRE-LERLEYRMKWEDDFRIYLKQLE----ETKPVI 143
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYT 129
+ GD+N+A ID + + F + R S L+E G F D +R+ +P++ AYT
Sbjct: 144 ICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDSYRTLYPDKTGAYT 201
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCL 156
W A + N G RID+ C L
Sbjct: 202 WWSYMFKARERNVGWRIDY-FCVSEVL 227
>gi|415907668|ref|ZP_11552880.1| Exodeoxyribonuclease III [Herbaspirillum frisingense GSF30]
gi|407762911|gb|EKF71671.1| Exodeoxyribonuclease III [Herbaspirillum frisingense GSF30]
Length = 270
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V D+G + ++Y P S + R + K +F L GR + +
Sbjct: 100 EFDDEGRYVECDYGDLTVISLYAPSGSSSEE-RQEAKFRFMEAFLPHLMDLEKSGREVVI 158
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAY 128
GD NIA ID + + + F R W + + G DV+R HPE +AY
Sbjct: 159 CGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDQLG--LVDVYRRLHPETTGDAY 216
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W + A N G RID+
Sbjct: 217 TWWSNRGQAWANNVGWRIDY 236
>gi|338535221|ref|YP_004668555.1| exodeoxyribonuclease III [Myxococcus fulvus HW-1]
gi|337261317|gb|AEI67477.1| exodeoxyribonuclease III [Myxococcus fulvus HW-1]
Length = 247
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D EGR I G + N Y P + +D RI +KL F+ L +R E L G R+
Sbjct: 74 ELDVEGRLQIARFGKLTVVNGYFPNGNGKDRDLSRIPYKLTFYRRLFERLEKPLRDGGRV 133
Query: 72 FVVGDLNIAPAAID-------RCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
V+GD N A +D R +G P+ + EF W R+ + D FR +
Sbjct: 134 LVMGDFNTAHQEVDLARPKENRETSGFRPE-EREEFDRWIRA-------GWVDTFRHFN- 184
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+ Y+ W G + N G RID++L +
Sbjct: 185 KGGGHYSWWSQRAGVREKNIGWRIDYVLAS 214
>gi|300771561|ref|ZP_07081436.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
gi|300761550|gb|EFK58371.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
Length = 255
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + D F + + Y P + +T R FK QF Q+ + LL + V G
Sbjct: 90 DFEGRIIRADFEKFSVMSTYFPSGTTGET-RQTFKYQFLDDFQQYSDRLLKDIPNLIVCG 148
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID + +A E R W + + SG + D FR +PE + Y+ W
Sbjct: 149 DYNICHRAIDIHNPKSNANTSGFLPEEREWMEN-FINSG--YVDSFRHLNPEPHQ-YSWW 204
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
GA N G RID+ + + P Q N H + C ++++
Sbjct: 205 SYRAGARARNLGWRIDYNMVSAPLASQIEKSYLLN-DAVHSDHCPVVVE 252
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 30/178 (16%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFK 50
G F+K E LK+ D EGR + + F L VY P R + R+ ++
Sbjct: 64 GTAVFTKQEPLKVTYGIGKEEHDQEGRVITLEFEGFYLVTVYTPNSQRGLARLEYRMTWE 123
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
+F L+ L Q + + GDLN+A ID R +AG F+ E R F
Sbjct: 124 EEFLSFLKN-----LEQAKPVIFCGDLNMAHTEIDLKNPKTNRKNAG--FSDEE-RAKFG 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+L + F D FR +P++ EAYT W A N G RID+ + Q D
Sbjct: 176 ELLKKG---FIDTFRYFYPDKTEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQLRD 230
>gi|255089617|ref|XP_002506730.1| predicted protein [Micromonas sp. RCC299]
gi|226522003|gb|ACO67988.1| predicted protein [Micromonas sp. RCC299]
Length = 310
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
WR++Q+ E + P C GH E C RVVKK GP FGR FF C R + + +C +F+W
Sbjct: 189 WRKVQR--EITPPKCTGHDEVCKVRVVKKSGPNFGRLFFTCPRTK------DDSCDFFQW 240
>gi|421124299|ref|ZP_15584559.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410438218|gb|EKP87314.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
Length = 267
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 215
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
W GA N G RID+ K +++SH+
Sbjct: 216 WTFRAGARAKNKGWRIDYFFVTE---ELKKNVKSHS 248
>gi|410448345|ref|ZP_11302426.1| exodeoxyribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|421114101|ref|ZP_15574531.1| exodeoxyribonuclease III [Leptospira santarosai str. JET]
gi|422004204|ref|ZP_16351426.1| exodeoxyribonuclease III [Leptospira santarosai serovar Shermani
str. LT 821]
gi|410017818|gb|EKO79869.1| exodeoxyribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|410800522|gb|EKS06710.1| exodeoxyribonuclease III [Leptospira santarosai str. JET]
gi|417257182|gb|EKT86588.1| exodeoxyribonuclease III [Leptospira santarosai serovar Shermani
str. LT 821]
gi|456874679|gb|EMF89951.1| exodeoxyribonuclease III [Leptospira santarosai str. ST188]
Length = 254
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR--IF 72
D EGR + ++ F L+N Y P + D VR K++F + QK E + + R+ I
Sbjct: 88 FDQEGRSIYLEYPEFALWNCYFPSGTTGD-VRQAAKMKFLDLFQK--EAIQRKKRQPNII 144
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD+NIA D D + + F R W L E G + D FR +PE++E Y
Sbjct: 145 LCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWLTQFL-EKG--WVDTFRYLYPEKQE-Y 200
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W GA N G RID+
Sbjct: 201 SWWTFRAGARAKNKGWRIDYFFVT 224
>gi|349574927|ref|ZP_08886857.1| exodeoxyribonuclease III [Neisseria shayeganii 871]
gi|348013459|gb|EGY52373.1| exodeoxyribonuclease III [Neisseria shayeganii 871]
Length = 280
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V TD G+ + ++Y P S + R Q K +F + GR I V
Sbjct: 110 EFDAEGRFVRTDFGNLSVISLYLPSGSSAEE-RQQVKYRFLDAFYPMLHDMKHSGRDIVV 168
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W ++ E G + D++R+ +PE YT
Sbjct: 169 CGDWNIAHQNIDLKNWKGNLKNSGFLPEERAWIGKVIAELG--WVDMWRTLYPE-APGYT 225
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A + G RID+
Sbjct: 226 WWSNRGQAYAKDVGWRIDY 244
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQGRR--IF 72
D EGR + + +F L VY P +S+D + R+ +++ + +K +LL R+ +
Sbjct: 88 DHEGRVITLEMENFYLVTVYTP--NSQDGLKRLDYRMTWEEDFRK---YLLQLDRQKPVL 142
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GDLN+A ID R +AG D + +F+ +L+++G F D FR +P +
Sbjct: 143 VCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG--FIDTFRHFYPTQ 195
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
Y+ W A + N G RID+ L + + D + H
Sbjct: 196 ENIYSWWSYRFKAREKNAGWRIDYFLASSRIADKLQDAKIH 236
>gi|116328536|ref|YP_798256.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331264|ref|YP_800982.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116121280|gb|ABJ79323.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124953|gb|ABJ76224.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 254
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ F L+N Y P + + VR K++F + QK + I +
Sbjct: 88 FDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAVKMKFLDLFQKEAAKRRKKQPNILLC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W + +E G + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCAG 153
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVTA 225
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 21/163 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L N Y P R + R++++ F L K L + +
Sbjct: 89 DKEGRVITLEYKKFFLVNAYTPNSQRGLTRLNYRMEWEEDFRSYLLK-----LDSVKPVI 143
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG F E ++L+ SG F D FR +P+++
Sbjct: 144 LCGDLNVAHQEIDIKNPAANRRNAG--FTDEEREK--MTILLNSG--FIDTFRYFYPDKK 197
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
+AYT W A + N G R+D+ + + D Q H+ V
Sbjct: 198 DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEV 240
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D+EGR + ++ F L NVY P + + R+++++ + V + +L L + + + +
Sbjct: 89 DNEGRVITLEYDKFFLVNVYTPNS-QQKLARLEYRMSWEDVFRN---YLKDLEKNKPVIL 144
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWP 132
GDLN+A ID + + F RS + E S F D FR +P+ Y+ W
Sbjct: 145 CGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSELLNSGFTDTFRYFYPDIEGVYSWWS 204
Query: 133 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 192
A N G RID+ + + + D + H
Sbjct: 205 YRFNARANNAGWRIDYFIVSQSLNDKLEDAKIH--------------------------- 237
Query: 193 KGGMSTRLEGSDHAPV 208
T +EGSDH PV
Sbjct: 238 -----TSIEGSDHCPV 248
>gi|158522569|ref|YP_001530439.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158511395|gb|ABW68362.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 262
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRAD-SEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D+EGR V D G FI FN+Y P ED R+ +KL F+ + QGR + +
Sbjct: 95 DNEGRIVELDLGDFIFFNIYFPNGQMGED--RLTYKLDFYRDFFAYADAYRKQGRSLVIC 152
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD N A ID + + + F R W + S + D FR +P+ + Y+
Sbjct: 153 GDYNTAHNEIDLKNPKANENTSGFMRIERDWLDKI---SADGYVDTFRHLYPDTVK-YSW 208
Query: 131 WPSNTGAEQFNYGTRIDHILC 151
W A + N G RID+
Sbjct: 209 WTYRFKARERNVGWRIDYFFV 229
>gi|114330706|ref|YP_746928.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307720|gb|ABI58963.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
Length = 257
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQG 68
+ +ID+EGR + D G+ + ++Y P S + + F FF +LQ L G
Sbjct: 85 IAEIDAEGRFLRVDFGNLTVISIYLPSGSSGEHRQAAKFFFMEHFFPLLQS----LAEGG 140
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 124
R + + GD NIA ID + + + F R W ++ E DVFR+ +PE
Sbjct: 141 REVLLCGDWNIAHKEIDLKNWRSNQKNSGFLPEERAWLSTVFDEL--KLVDVFRTINPE- 197
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
+ YT W + A N G RID+ + A P L S + +LIDY
Sbjct: 198 PDQYTWWSNRGQAWAKNVGWRIDYQI-ATPGLASTATGASIYKTERFSDHAPLLIDY 253
>gi|427402461|ref|ZP_18893458.1| exodeoxyribonuclease III (xth) [Massilia timonae CCUG 45783]
gi|425718753|gb|EKU81699.1| exodeoxyribonuclease III (xth) [Massilia timonae CCUG 45783]
Length = 256
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 13 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
++ D+EGR D G + ++Y P S ++ K +F V + L +GR I
Sbjct: 87 VEFDAEGRYTRCDFGDLTVISLYAPSGSSSPERQLA-KFRFMEVFLPHLQELQAEGREIV 145
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 128
+ GD NIA ID + + + F R W + E G DV R P R E Y
Sbjct: 146 ICGDWNIAHKEIDLKNWKGNLKNSGFLPEERAWMTRIFDELG--LVDVHRGLDP-RPEQY 202
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 183
T W + A N G RID+ + A P L + S + ++IDY+R
Sbjct: 203 TWWSNRGQAYAKNVGWRIDYHV-ATPGLAKCAKAVSVYKDVKFSDHAPLIIDYER 256
>gi|393784198|ref|ZP_10372364.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
gi|392666238|gb|EIY59753.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
Length = 254
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR V D+G + +VY P S D R FK+ + Q+ L ++ + G
Sbjct: 89 DNEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQQYVTELQKSRPKLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI ID D + + F R W L F D FR+ +PE++E YT W
Sbjct: 148 DYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPC 155
+ N G RID+ + + P
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K+E L + D EGR + D G L Y P + R+ +++ +
Sbjct: 67 GTAIFTKEEPLSVTYGLGIEEHDQEGRLITADFGSHYLLCCYTPNS-QRGLARLSYRMTW 125
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGS 112
+ K + L + + + GDLN+A ID + + F R + +
Sbjct: 126 EKAM-KEYMTKLAAEKPVILCGDLNVAHEDIDIANPASNHKNAGFTDEERGRMTDLLAAG 184
Query: 113 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
F D FR HP+ ++AY+ W A + N G RID+ L +
Sbjct: 185 FTDSFRHLHPDEKDAYSWWSYFAKARERNVGWRIDYFLVS 224
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDLEGV 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|398834943|ref|ZP_10592339.1| exodeoxyribonuclease III [Herbaspirillum sp. YR522]
gi|398219524|gb|EJN05999.1| exodeoxyribonuclease III [Herbaspirillum sp. YR522]
Length = 257
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D G + ++Y P S + ++ K +F V L GR I +
Sbjct: 88 EFDAEGRYVECDFGDLTVISLYAPSGSSSEERQLA-KFRFMEVFLPHLMELERSGREIVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAY 128
GD NIA ID + + + F R W + + G DV+R HPE +AY
Sbjct: 147 CGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDQLG--LVDVYRLLHPETTGDAY 204
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W + A N G RID+
Sbjct: 205 TWWSNRGQAWANNVGWRIDY 224
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + + F VY P + SE + RIQ++ F L+ L Q + +
Sbjct: 86 DKEGRVITLEFEEFYFVTVYTPNSQSELARLSYRIQWETDFLAYLKG-----LEQKKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A A ID R +AG +E R F +L F D FR +PE
Sbjct: 141 FAGDLNVAYAEIDLKNPKTNRKNAG---FTDEERAKFGEVL---KAGFIDTFRYFYPEME 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
Y+ W A N G RID+ C L +
Sbjct: 195 GIYSWWSYRFSARAKNAGWRIDY-FCVSESLKDR 227
>gi|418708979|ref|ZP_13269779.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410770909|gb|EKR46122.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|456968926|gb|EMG10029.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 267
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N+Y P + D +R K++F + QK + I V
Sbjct: 101 FDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQPNIIVC 159
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + D FR +P+++E Y+
Sbjct: 160 GDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQE-YSW 215
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 216 WTFRAGARAKNKGWRIDYFFVT 237
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + +F + VY P + +E R+ +++ + + + +L + + + V G
Sbjct: 86 DKEGRVITLEFENFYMVTVYTPNSKNE-LARLDYRMVWEDAFRDYLK-VLDEKKPVIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSN 134
DLN+A ID + + F RS E F D FR +P+ AY+ W
Sbjct: 144 DLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGFVDTFRYFYPDEVGAYSWWSYR 203
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 168
A N G RID+ L + + D + H+ V
Sbjct: 204 FNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEV 237
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR---IF 72
D EGR + + F + VY P A D R+ ++L++ + + LC R +
Sbjct: 9 DPEGRIITLEFPSFYVVTVYTPNA-KRDLSRLPYRLEW----EDAFRAYLCALDREKPVI 63
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCW 131
GDLN+A ID +A + + F R+ + E F D FR+ +P + YT W
Sbjct: 64 ACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLDAGFVDTFRALYPNVTDKYTWW 123
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
+ G + N G RID+ L +
Sbjct: 124 SNMPGVRERNIGWRIDYFLVS 144
>gi|169787256|gb|ACA80067.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787264|gb|ACA80071.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787302|gb|ACA80090.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787310|gb|ACA80094.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
IDSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 IDSEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ ID C+
Sbjct: 164 GDLNVIRDEIDTCNV 178
>gi|149922823|ref|ZP_01911246.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
gi|149816290|gb|EDM75794.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
Length = 280
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ D EGR + G + NVY P + D R+ +KL F+ + + E G R+
Sbjct: 104 RFDDEGRVQLARFGRLFVANVYFPNGNGRDRDNSRVPYKLDFYRAVFELVERKRRGGYRV 163
Query: 72 FVVGDLNIAPAAIDRCDAGPDFA--------KNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
V+GD N A AID + + E W R+ + D FRS P
Sbjct: 164 LVMGDFNTAHEAIDLARPKQNVKTSGFLPEEREELDRWIRA-------GWIDTFRSLEPG 216
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID++L +
Sbjct: 217 PGH-YSWWSQRGTARERNVGWRIDYVLAS 244
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F L VY P + E+ R+ +++++ F K+ E + + +
Sbjct: 87 DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKKLE----EKKPVI 141
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GDLN+A ID R +AG D + +F + L+ESG F D FR +PE+
Sbjct: 142 VCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKF-----TTLLESG--FTDTFRYFYPEQ 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 195 EGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|410026254|gb|AFV52282.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 233
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 1 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60
M + + ++ +D+EGRCV+ + F+LF VY P + + +R F+ F L R
Sbjct: 86 MADIAEIGGEDPAGLDAEGRCVVVEFPAFVLFGVYSPA--NSNGLRDGFRHGFVCALDHR 143
Query: 61 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFRIWFRSMLV 107
L+ G+ + +VGDLN+ I D+GP +F R F L+
Sbjct: 144 IRNLIKAGKNVILVGDLNVTRHEI---DSGPTLEEMRKGLITHEEFISGPNRRIFNQQLI 200
Query: 108 ES-----------GGSFFDVFRSKHPERREAYT 129
+ G F+D R HP+R+ YT
Sbjct: 201 DGEVVGERDEGREKGVFWDTTRIFHPDRKGMYT 233
>gi|401420792|ref|XP_003874885.1| endonuclease/exonuclease protein-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491121|emb|CBZ26386.1| endonuclease/exonuclease protein-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 736
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 5 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
+ FS+DE + EGR V+T H F+L NVY P A R FKL+F H L+K+ E L
Sbjct: 145 QPFSEDEF---NEEGRAVVTHHNAFVLVNVYVPNA--RGGARHTFKLRFLHALEKKMEQL 199
Query: 65 LCQ-GRRIFVVGDLNIAPAAID 85
G+ + +VGDLN+ A D
Sbjct: 200 RQDTGKPVILVGDLNMTYCAHD 221
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGLEEHDQEGRVITLEFENVFVITVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|365154350|ref|ZP_09350783.1| exodeoxyribonuclease III (xth) [Campylobacter sp. 10_1_50]
gi|363650188|gb|EHL89279.1| exodeoxyribonuclease III (xth) [Campylobacter sp. 10_1_50]
Length = 252
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + +LFN+Y P +D R+ +K+ F+ + L+ G+ + G
Sbjct: 86 DTEGRVLEHKFDDIVLFNIYFPNGQKDDE-RLAYKMDFYEKFLAYCKELVRSGKEVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W +L +SG F D FR+ + + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWIDEVL-KSG--FIDTFRAVNGDVADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|169787200|gb|ACA80039.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
IDSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 IDSEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ ID C+
Sbjct: 164 GDLNVIRDEIDTCNV 178
>gi|83311632|ref|YP_421896.1| exonuclease III [Magnetospirillum magneticum AMB-1]
gi|82946473|dbj|BAE51337.1| Exonuclease III [Magnetospirillum magneticum AMB-1]
Length = 440
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D + R + G + L ++Y P + + +KL + L+ + LL QG + G
Sbjct: 270 DEQARYIEATIGGWRLASLYLPNGNPAPGDKFDYKLAWMARLRTHAQALLAQGIPFVLGG 329
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D NI P D D P + + R +RS +V G + FR+ HP + Y+
Sbjct: 330 DFNICPTDDDVYDP-PKWRDDALCRPDSRAAWRS-IVNLG--LTEAFRALHPGEKGRYSF 385
Query: 131 WPSNTGAEQFNYGTRIDHILC---AGPCLH 157
W GA Q + G RIDH L A CLH
Sbjct: 386 WDYQAGAWQRDEGLRIDHFLLSPQAADCLH 415
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ F VY P + SE R+++++ + K + L + + + V G
Sbjct: 86 DTEGRVITLEYDKFFFITVYTPNSGSE-LKRLEYRMSWEEDF-KNYLLALNKTKGVVVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID + + F R + L+++G F D FR +P+ AY+ W
Sbjct: 144 DLNVAHTEIDLKNPKSNMKNAGFTPEEREKFTKLLDAG--FIDTFRYYNPDLTGAYSWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCA 152
A + N G RID+ L +
Sbjct: 202 YRFNARKNNAGWRIDYFLVS 221
>gi|326798804|ref|YP_004316623.1| exodeoxyribonuclease III [Sphingobacterium sp. 21]
gi|326549568|gb|ADZ77953.1| exodeoxyribonuclease III Xth [Sphingobacterium sp. 21]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + D + + Y P S D R FK QF ++ + LL + + + G
Sbjct: 90 DKEGRIIRADFEELSIISAYFPSGSSGDA-RQDFKYQFLDDFRRYSDKLLTEFPSLVISG 148
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID + +A E R W S + SG + D FR HPE + YT W
Sbjct: 149 DYNICHRAIDIHNPKSNANSSGFLPEERAWMES-FINSG--YIDTFRHLHPEPHQ-YTWW 204
Query: 132 PSNTGAEQFNYGTRIDH 148
A N G RID+
Sbjct: 205 SYRANARAKNLGWRIDY 221
>gi|218781643|ref|YP_002432961.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
gi|218763027|gb|ACL05493.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
Length = 253
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ F L NVY P A + VR+ +KL F L K + L + + + + G
Sbjct: 90 DAEGRVITLEYDDFYLMNVYFPNAQPK-LVRLDWKLGFNQTLHK-FANALGEKKSVVLCG 147
Query: 76 DLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D N+A ID + P ++ E R W + G + D FR + E + YT
Sbjct: 148 DYNVAHKPIDLANPKQNEQNPGYSPEE-RAWMDEFI---GSGYVDAFRMFNQE-PDNYTW 202
Query: 131 WPSNTGAEQFNYGTRIDHI 149
W A N G RID+
Sbjct: 203 WSYRFNARAKNIGWRIDYF 221
>gi|169787326|gb|ACA80102.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
IDSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 IDSEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ ID C+
Sbjct: 164 GDLNVIRDEIDTCNV 178
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 17 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRIF 72
SEGR + + F L NVY P + D R+ +LQ F+ LQ+ L + +
Sbjct: 88 SEGRILTLEFASFFLVNVYTPNS-QRDLARLHERLQWEDAFYAYLQE-----LENEKPVI 141
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF-DVFRSKHPERREAYTCW 131
V GD+N+A ID +A + + F R+ + + D +R +P++ AYT W
Sbjct: 142 VCGDMNVAHEEIDLRNAKSNRGNSGFTTEERAKMTRLQSEWLIDSYRYYYPDQEGAYTWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
+ N G RID+ L + +D+ ++
Sbjct: 202 SYMKTVRERNIGWRIDYFLVSDKLKSAMNDVSIYS 236
>gi|418718987|ref|ZP_13278187.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|421092901|ref|ZP_15553629.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410364277|gb|EKP15302.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410744140|gb|EKQ92881.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|456890159|gb|EMG01009.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200701203]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ F L+N Y P + + VR K++F + QK + I +
Sbjct: 88 FDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAAKMKFLDLFQKEAAKRRKKQPNILLC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W + +E G + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 78/205 (38%), Gaps = 49/205 (23%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQKRWEFLLCQG 68
D EGR + + F L Y P A +E RI +++Q + L K+ +LC
Sbjct: 86 DHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDKKKPVVLC-- 142
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREA 127
GDLN+A ID + + F R + E S F D FR+ +P+R A
Sbjct: 143 ------GDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTELLSSGFTDTFRALYPDRTGA 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
YT W A + N G RID+ + + L + D H
Sbjct: 197 YTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH---------------------- 234
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL 212
+EGSDH PV + L
Sbjct: 235 ----------AEVEGSDHCPVELVL 249
>gi|424821490|ref|ZP_18246528.1| exodeoxyribonuclease III [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|342328269|gb|EGU24753.1| exodeoxyribonuclease III [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P S D R+ +K+ F+ L+ +G+ + G
Sbjct: 86 DDEGRVLEHKFDNIHLFNIYFPNGQSGDE-RLAYKMDFYDKFLSYINALVSEGKGVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W +++SG F D FR + ++ AY+ W
Sbjct: 145 DVNTAHRKIDLKNPKANSKTSGFLPIERAWI-DRVIDSG--FIDTFRFINGDKENAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G+ FSK E L + D EGR + ++ F L VY P + + +R+ +++Q+
Sbjct: 64 GVMVFSKKEPLSVSYGLGIDEHDHEGRVITCEYDTFYLVCVYTPNS-KDGLLRLDYRMQW 122
Query: 54 ---FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
F +R L + + + V GDLN+A ID R +AG F E
Sbjct: 123 EDAFRAYLQR----LKESKSVVVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--M 174
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
+ L+ SG F D +R +P++ Y+ W A + N G RID+ L + + + Q
Sbjct: 175 TTLLSSG--FVDSYRYLYPDKENVYSWWSYRFSAREKNAGWRIDYFLVSEDAKERIEEAQ 232
Query: 164 SHN 166
H
Sbjct: 233 IHT 235
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L Y P R R Q+ F L+K L + + +
Sbjct: 92 DKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGYRQQWNKDFLSYLKK-----LDEIKPVI 146
Query: 73 VVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
+ GDLN+A ID + + F K E R F ++L G F D FR +P+++ A
Sbjct: 147 LCGDLNVAHKDIDLANPKTNTRTAGFTKEE-RADFTTLL---GEGFKDTFRELYPDKKSA 202
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
YT W GA N G R+D+ + +
Sbjct: 203 YTFWSYMGGARAKNVGWRLDYFVVS 227
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|118475279|ref|YP_892840.1| exodeoxyribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|118414505|gb|ABK82925.1| exodeoxyribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + LFN+Y P S D R+ +K+ F+ L+ +G+ + G
Sbjct: 86 DDEGRVLEHKFDNIHLFNIYFPNGQSGDE-RLAYKMDFYDKFLSYINALVSEGKGVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W + ++SG F D FR + ++ AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANSKTSGFLPIERAWIDKV-IDSG--FIDTFRFINGDKENAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 62/229 (27%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G F+K+E L + D EGR + + F + VY P + E +R+ +++ +
Sbjct: 64 GTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEKFYMITVYTPNSKDE-LLRLDYRMVW 122
Query: 54 FHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFR 103
+K +L L + + + V GDLN+A ID R +AG D + +F
Sbjct: 123 EDEFRK---YLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF----- 174
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
+ L+ESG F D FR +P+ AY+ W A + N G RID+ + + D +
Sbjct: 175 TELLESG--FIDTFRYFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAE 232
Query: 164 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
H + EGSDH PV + L
Sbjct: 233 IH--------------------------------AQTEGSDHCPVVLFL 249
>gi|15594879|ref|NP_212668.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|195941668|ref|ZP_03087050.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi 80a]
gi|216264267|ref|ZP_03436259.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223888847|ref|ZP_03623438.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224532684|ref|ZP_03673301.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225548581|ref|ZP_03769628.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226321012|ref|ZP_03796557.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
gi|226321840|ref|ZP_03797366.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|2688454|gb|AAC66902.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|215980740|gb|EEC21547.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223885663|gb|EEF56762.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224512302|gb|EEF82686.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225370611|gb|EEH00047.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226233029|gb|EEH31782.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|226233613|gb|EEH32349.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+ + + G
Sbjct: 87 DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
G+ED S + EGR + + + VY P A D R+ ++L++ + +
Sbjct: 48 GIEDDS-------EPEGRIITLEFEACYVVTVYTPNA-KRDLSRLPYRLEWEDRF-RAYL 98
Query: 63 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKH 121
L Q + + GDLN+A ID +A + + F RS + + F D FR H
Sbjct: 99 LHLDQNKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERSKMTQLLDAGFTDTFRYLH 158
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
P+R +AYT W + + N G RID+ L +
Sbjct: 159 PDRADAYTWWSNMPKVRERNIGWRIDYFLIS 189
>gi|418738616|ref|ZP_13295009.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410745314|gb|EKQ98224.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ F L+N Y P + + VR K++F + QK + I +
Sbjct: 88 FDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAAKMKFLDLFQKEAAKRRKKQPNILLC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W + +E G + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|329955159|ref|ZP_08296116.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
gi|328526158|gb|EGF53177.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D+G + +VY P S D R FK+ + Q+ L ++ + G
Sbjct: 89 DNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFQQYVVELQRTRPKLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI AID D + + F R W L F D FR HP+++E YT W
Sbjct: 148 DYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPDKQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + P + + N H + C ++++
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVNEPVRPMLKEARILN-DAVHSDHCPMMLE 251
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDLEGV 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLLCQGRRI 71
D EGR + + + + N Y P A RI ++LQ F LQK L + + +
Sbjct: 87 DQEGRVITLEFENLFVVNCYTPNA-KRGLERIDYRLQWEADFKEYLQK-----LDRKKPV 140
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG F+ E + S L+ +G F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SALLNTG--FTDSFRYLYPDR 194
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W T A + N G R+D+++ +
Sbjct: 195 EGGYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR + ++ F L N Y P A E R+ FK +F L + L + + + +
Sbjct: 316 QFDDEGRVLTLEYPDFYLINTYSPNAQPE-LKRLAFKQEFNRTLLAYMDRLRSE-KTVVL 373
Query: 74 VGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID + P F++ E R W ++ + D FR + E + Y
Sbjct: 374 CGDLNVAHKEIDLANPKANVKNPGFSEQE-RAWMDELI---AAGYVDTFRQFNQEAGQ-Y 428
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAG 153
T W A N G RID+ + G
Sbjct: 429 TWWSYRFNARAKNIGWRIDYFIVDG 453
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDIEGV 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|329910713|ref|ZP_08275356.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
gi|327546113|gb|EGF31174.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
Length = 256
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D+G+ + +VY P S + ++ K +F V L GR + +
Sbjct: 88 EFDAEGRYVQCDYGNLSIVSVYCPSGSSGEERQLA-KFRFMDVFLPHLAALKASGREVVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W + E + DVFR + ER E YT
Sbjct: 147 CGDWNIAHQEIDLKNWKGNKKNSGFLPEERAWLSRLFDEV--ALVDVFR-RVDERAEQYT 203
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A N G RID+
Sbjct: 204 WWSNRGQAWANNVGWRIDY 222
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 47/202 (23%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ F L Y P + E +R+ +++ + + + L + + + V G
Sbjct: 86 DNEGRLITLEYEDFFLVTCYTPNSKQE-LLRLDYRMVWEDAF-RNYLLELNKTKSVIVCG 143
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID R +AG F E S+L++SG F D FR +P++ Y
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAG--FTDQEREK--MSILLDSG--FTDTFRYFYPDKENEY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W + + N G RID+ L + + D Q H
Sbjct: 198 SWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQ---------------------- 235
Query: 189 APRWKGGMSTRLEGSDHAPVYM 210
R+ GSDH PVY+
Sbjct: 236 ----------RILGSDHCPVYL 247
>gi|224539496|ref|ZP_03680035.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|423224999|ref|ZP_17211467.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
gi|224518891|gb|EEF87996.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|392634046|gb|EIY27978.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D G + +VY P S D R FK+ + Q+ L ++ + G
Sbjct: 89 DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRPKLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI ID D + + F R W L F D FR HPE++E YT W
Sbjct: 148 DYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + P + + N H + C +L+D
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVTEPVRPLLKEARILN-DAVHSDHCPMLLD 251
>gi|218249629|ref|YP_002375040.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
gi|218164817|gb|ACK74878.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+ + + G
Sbjct: 87 DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLFYVENLADSLVCDGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + VNE +KR N
Sbjct: 200 WWSYRTRARERNMGWRIDYFI---------------------VNEF-----FKR----NV 229
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
K + ++ GSDH PV++ L +V
Sbjct: 230 E--KSLILDKVMGSDHCPVFLELADV 253
>gi|113866254|ref|YP_724743.1| exodeoxyribonuclease III [Ralstonia eutropha H16]
gi|113525030|emb|CAJ91375.1| Exodeoxyribonuclease III [Ralstonia eutropha H16]
Length = 258
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFF-HVLQKRWEFLLCQGR 69
+ DSEGR V + H + +VY P S + + +F F H+LQ L GR
Sbjct: 88 EFDSEGRYVEVQYPHLAVISVYVPSGSSGEERQLAKFRFMEAFLPHLLQ-----LKASGR 142
Query: 70 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 125
I + GD+NIA ID + + + F R W + G + DVFR P R
Sbjct: 143 EIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDVHG--YVDVFRKLDP-RP 199
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILC 151
E YT W + A N G RID+ L
Sbjct: 200 EQYTWWSNRGQAYAKNVGWRIDYHLA 225
>gi|399573824|gb|AFP49251.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ +
Sbjct: 106 LDSEGRCVVIEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|157164085|ref|YP_001465973.1| exodeoxyribonuclease III [Campylobacter concisus 13826]
gi|112801830|gb|EAT99174.1| exodeoxyribonuclease III [Campylobacter concisus 13826]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + +LFN+Y P +D R+ +K+ F+ + L+ G+ + G
Sbjct: 86 DTEGRVLEHRFDDIVLFNIYFPNGQKDDE-RLAYKMDFYEKFLAYCKELVKSGKEVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W +L +SG F D FR+ + + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWIDEVL-KSG--FIDTFRAVNGDVADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDLEGI 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|399573814|gb|AFP49246.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 228
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 95 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 152
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 153 GDLNVIRDEMDTCNV 167
>gi|405375874|ref|ZP_11029891.1| Exodeoxyribonuclease III [Chondromyces apiculatus DSM 436]
gi|397085828|gb|EJJ17001.1| Exodeoxyribonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 247
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D EGR + G + N Y P + +D RI +KL F+ L +R E L G R+
Sbjct: 74 ELDVEGRLQMARFGKLTVVNGYFPNGNGKDRDLSRIPYKLTFYRRLFERLEKPLRDGGRV 133
Query: 72 FVVGDLNIAPAAID-------RCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
V+GD N A ID R +G P+ + EF W R+ + D FR +
Sbjct: 134 LVLGDFNTAHQEIDLARPRENRETSGFRPE-EREEFDRWIRA-------GWVDTFRHFN- 184
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
+ Y+ W G + N G RID++L +
Sbjct: 185 KGGGHYSWWSQRAGVREKNIGWRIDYVLAS 214
>gi|416113660|ref|ZP_11593411.1| Exodeoxyribonuclease III [Campylobacter concisus UNSWCD]
gi|384578444|gb|EIF07709.1| Exodeoxyribonuclease III [Campylobacter concisus UNSWCD]
Length = 252
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + +LFN+Y P +D R+ +K+ F+ + L+ G+ + G
Sbjct: 86 DTEGRVLEHRFDDIVLFNIYFPNGQKDDE-RLAYKMDFYEKFLAYCKELVKSGKEVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W +L +SG F D FR+ + + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWIDEVL-KSG--FIDTFRAVNGDVADAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A N G RID+ +
Sbjct: 202 SYRFNARAKNVGWRIDYFFIS 222
>gi|456865148|gb|EMF83508.1| exodeoxyribonuclease III [Leptospira weilii serovar Topaz str.
LT2116]
Length = 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + ++ +F L+N Y P + D +R K++F + QK + I +
Sbjct: 88 FDKEGRSIYLEYSNFALWNSYFPSGTTGD-MRQAAKMKFLDLFQKEAIKRRKKQPNIILC 146
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD+NIA D D + + F R W L + + D FR +PE++E Y+
Sbjct: 147 GDINIAHTPQDIHDPKGNAKSSGFLPEEREWLSGFLDQ---GWVDTFRYLYPEKQE-YSW 202
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G RID+
Sbjct: 203 WTFRAGARAKNKGWRIDYFFVT 224
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + ++ +F + VY P + SE + R+Q++ F LQ+ L + + +
Sbjct: 86 DQEGRVITLEYENFYMVTVYTPNSQSELARLSYRMQWEDDFRAYLQQ-----LDEKKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ GDLN+A ID R +AG +E R F + L F D FR +P++
Sbjct: 141 MCGDLNVAHQEIDLKNPKTNRHNAG---FTDEEREKFTTFL---DAGFTDTFRYFYPDKT 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
E Y+ W A + N G RID+ C L +K
Sbjct: 195 EIYSWWSYRFKAREKNAGWRIDY-FCTSKRLDEK 227
>gi|387826172|ref|YP_005805625.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
gi|312147931|gb|ADQ30590.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+ + + G
Sbjct: 87 DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLNFLSYVENLADSLVCDGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|221218058|ref|ZP_03589524.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224533538|ref|ZP_03674127.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225549668|ref|ZP_03770634.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|387827436|ref|YP_005806718.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
gi|221192006|gb|EEE18227.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224513211|gb|EEF83573.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369945|gb|EEG99392.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|312149695|gb|ADQ29766.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+ + + G
Sbjct: 87 DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 32/193 (16%)
Query: 7 FSKDELLKIDS---------EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 57
FSK E L I++ EGR + ++ F L N Y P + + R+ F++ + +
Sbjct: 68 FSKQEPLNIETGLDDDEFNHEGRTITLEYPDFYLINSYTPNSQPK-LKRLDFRMGYNDAM 126
Query: 58 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFA---KNEFRIWFRSMLVES 109
K + L + + + + GDLN+A ID + P F+ +N+F S L++S
Sbjct: 127 WKHMQ-TLSKKKPVILCGDLNVAHNEIDIKNDKTNHKNPGFSDEERNKF-----SELLDS 180
Query: 110 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA--GPCLHQKHDLQSHNF 167
G F D FR HPE + Y+ W A + N G RID+ + + G L Q D+ + +
Sbjct: 181 G--FTDTFRYLHPEEVK-YSWWSYRFNARKNNAGWRIDYFVISNNGQDLIQNADILNDVY 237
Query: 168 VTCHVNECDILID 180
+ H C I +D
Sbjct: 238 GSDH---CPIQLD 247
>gi|219112079|ref|XP_002177791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410676|gb|EEC50605.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 580
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFV 73
+D++GRCV+TDHG F+LFNVY P + + + FK++F + L++ + ++ + +
Sbjct: 118 LDAQGRCVMTDHGTFVLFNVYVPASGGQP---LAFKMKFLNALRRSMRKQRQEKQKPVVL 174
Query: 74 VGDLNIA 80
VGDLNIA
Sbjct: 175 VGDLNIA 181
>gi|237749208|ref|ZP_04579688.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380570|gb|EEO30661.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 260
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
+ D+EGR D F L ++Y P S + +F +F+ L+K L GR
Sbjct: 88 EFDAEGRYFQCDFRDFSLVSLYAPSGSSSPERQEAKFRFMDEFYPYLKK----LKDSGRE 143
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 125
+ GD NIA ID + + + F R W + E G + DV+R HP+
Sbjct: 144 FVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTDVFDELG--WVDVYRLLHPDTTG 201
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
EAYT W + A N G RID+ + A P + +K
Sbjct: 202 EAYTWWSNRGQAYAKNVGWRIDYQI-ATPGIAKK 234
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 24/152 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + F L VY P + D R+ +++ +F L+ L + + +
Sbjct: 86 DQEGRVITLEFDTFYLVTVYTPNS-QRDLARLDYRMIWEAEFLGYLKN-----LEKSKPV 139
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG +E R F +L F D FR +P++
Sbjct: 140 ILCGDLNVAHTEIDLKNPKTNRKNAG---FTDEERAKFSELL---KNGFIDTFRHFNPDK 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+EAYT W A N G RID+ C L
Sbjct: 194 KEAYTWWSYMFNARANNAGWRIDY-FCVSESL 224
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 38/182 (20%)
Query: 7 FSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL------ 51
F+K+E L + D+EGR + + F L NVY P + + R+ +++
Sbjct: 69 FTKEEPLSVKIGIGIEEHDNEGRVLTLEFNDFYLVNVYTPNS-KQGLERLDYRMVWEDVF 127
Query: 52 -QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFR 103
Q+ L+K+ +LC GDLN+A ID R +AG + E +I
Sbjct: 128 RQYLKELEKKKPVILC--------GDLNVAHKEIDLKNPKVNRKNAGFTDEERE-KI--- 175
Query: 104 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 163
+ L++SG F D +R +P++ AY+ W A N G RID+ L + + D +
Sbjct: 176 TQLLDSG--FIDTYRFFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAK 233
Query: 164 SH 165
H
Sbjct: 234 IH 235
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 78/205 (38%), Gaps = 49/205 (23%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQKRWEFLLCQG 68
D EGR + + F L Y P A +E RI +++Q + L K+ +LC
Sbjct: 86 DHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDKKKPVVLC-- 142
Query: 69 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREA 127
GDLN+A ID + + F R + E S F D FR+ +P+R A
Sbjct: 143 ------GDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTELLSSGFTDTFRALYPDRTGA 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187
YT W A + N G RID+ + + L + D H
Sbjct: 197 YTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH---------------------- 234
Query: 188 NAPRWKGGMSTRLEGSDHAPVYMCL 212
+EGSDH PV + L
Sbjct: 235 ----------AEVEGSDHCPVELVL 249
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDLEGV 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|339324366|ref|YP_004684059.1| exodeoxyribonuclease III [Cupriavidus necator N-1]
gi|338164523|gb|AEI75578.1| exodeoxyribonuclease III [Cupriavidus necator N-1]
Length = 258
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V + H + +VY P S + R Q K +F L GR I +
Sbjct: 88 EFDNEGRYVEVQYPHLAVISVYVPSGSSGEE-RQQAKFRFMEAFLPHLLQLKASGREIVL 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD+NIA ID + + + F R W + G + DVFR P R + YT
Sbjct: 147 CGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDSHG--YVDVFRKLDP-RPDQYT 203
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W + A N G RID+ L
Sbjct: 204 WWSNRGQAYAKNVGWRIDYHLA 225
>gi|225552135|ref|ZP_03773075.1| exodeoxyribonuclease III [Borrelia sp. SV1]
gi|225371133|gb|EEH00563.1| exodeoxyribonuclease III [Borrelia sp. SV1]
Length = 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 43/205 (20%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+ + + G
Sbjct: 87 DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGKNVVICG 145
Query: 76 DLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D NIA ID P + E W L + F +F +K P YT
Sbjct: 146 DFNIAHTEIDLISPDSNRESPGYYIEE-TTWLDDFLNKGYVDTFRIF-NKDP---GYYTW 200
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 190
W T A + N G RID+ + + F +V + IL
Sbjct: 201 WSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL------------ 235
Query: 191 RWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 -------DKVMGSDHCPVFLELADV 253
>gi|399573820|gb|AFP49249.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573822|gb|AFP49250.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 233
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|409408449|ref|ZP_11256884.1| exodeoxyribonuclease III protein [Herbaspirillum sp. GW103]
gi|386431771|gb|EIJ44599.1| exodeoxyribonuclease III protein [Herbaspirillum sp. GW103]
Length = 258
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V D+G + ++Y P S + R + K +F L GR + +
Sbjct: 88 EFDDEGRYVECDYGDLTVISLYAPSGSSSEE-RQEAKFRFMEAFLPHLMELEKSGREVVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EAY 128
GD NIA ID + + + F R W + + G DV+R +PE EAY
Sbjct: 147 CGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDQLG--LVDVYRRLYPETTGEAY 204
Query: 129 TCWPSNTGAEQFNYGTRIDH 148
T W + A N G RID+
Sbjct: 205 TWWSNRGQAWANNVGWRIDY 224
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 24/152 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + F L VY P + D R+ +++ +F L+ L + + +
Sbjct: 86 DQEGRVITLEFDTFYLVTVYTPNS-QRDLARLDYRMIWEAEFLGYLKN-----LEKSKPV 139
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
+ GDLN+A ID R +AG +E R F +L F D FR +P++
Sbjct: 140 ILCGDLNVAHTEIDLKNPKTNRKNAG---FTDEERAKFSELL---KNGFIDTFRHFNPDK 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+EAYT W A N G RID+ C L
Sbjct: 194 KEAYTWWSYMFNARANNAGWRIDY-FCVSESL 224
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + F + VY P + +E R+ +++ +F L K L + + +
Sbjct: 86 DQEGRVITLEFEDFYMVTVYTPNSKNE-LERLDYRMIWEDEFRSYLAK-----LNEAKPV 139
Query: 72 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GD+N+A ID R +AG +E R F +L F D FR +P+R
Sbjct: 140 VVCGDMNVAHEEIDLKNPKTNRRNAG---FTDEERTKFTELL---KAGFTDSFRYLYPDR 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
AY+ W A + N G RID+ + + Q + + H
Sbjct: 194 LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F L VY P + E+ R+ +++++ F K+ E + + +
Sbjct: 87 DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKKLE----EKKPVI 141
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG +E R F ++L ESG F D FR +PE+
Sbjct: 142 VCGDLNVAHKEIDLKNPKTNRKNAG---FTDEERAKFTTLL-ESG--FTDTFRYFYPEQE 195
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 196 GIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|445494771|ref|ZP_21461815.1| exodeoxyribonuclease ExoA [Janthinobacterium sp. HH01]
gi|444790932|gb|ELX12479.1| exodeoxyribonuclease ExoA [Janthinobacterium sp. HH01]
Length = 257
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D G+ + +VY P + S R + K +F + + L +GR + +
Sbjct: 88 EFDAEGRYVRCDFGNLTVISVYCP-SGSSGPERQEAKFRFMDLFLPHLQALHAEGREVVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W + E G + DV R P R E YT
Sbjct: 147 CGDWNIAHKEIDLKNWKGNKKNSGFLPEEREWMTRIFDEVG--YVDVHRGLDP-REEQYT 203
Query: 130 CWPSNTGAEQFNYGTRID-HILCAG 153
W + A N G RID H+ G
Sbjct: 204 WWSNRGQAYAKNVGWRIDYHVATPG 228
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLRVMYGIGIEEHDQEGRVITLEFENLFVMTVYTPNS-KRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L + + + + GDLN+A ID R +AG F+ E + R L
Sbjct: 124 EEALLS-YILELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--L 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G R+D+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIED 231
>gi|399573818|gb|AFP49248.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 228
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 95 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 152
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 153 GDLNVIRDEMDTCNV 167
>gi|269958811|ref|YP_003328599.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848641|gb|ACZ49285.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
Length = 295
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 33 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD 92
+VY P DT +KL F L+ R LL I V GD N+AP +D DA
Sbjct: 129 SVYVPNGQEVDTETFVYKLNFLRSLKARMLKLLEGEEWIVVGGDYNVAPECMDVYDAQAL 188
Query: 93 FAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 148
K F R R++L F D FR H ++E ++ W G+ Q N G RIDH
Sbjct: 189 DGKLCFHPEERARLRAILY---SGFTDAFRVLHGGKQE-FSWWNYREGSWQRNRGMRIDH 244
Query: 149 ILCA 152
IL +
Sbjct: 245 ILLS 248
>gi|84500937|ref|ZP_00999172.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
gi|84391004|gb|EAQ03422.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
Length = 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 21 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIA 80
V+ +H + +Y P + + +KL + L++R L+ Q + GD NI
Sbjct: 95 TVVGEHAALRVCGLYLPNGNPAPGPKYDYKLAWMERLRERARQLIAQEEPALMAGDYNII 154
Query: 81 PAAID--RCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 136
P D R DA D A + + R +R +L F + FR++HP Y+ W G
Sbjct: 155 PQPEDVARPDAWRDDALFRLDSRDAYRRVL---NLGFTEAFRTRHPAPGH-YSFWDYQAG 210
Query: 137 AEQFNYGTRIDHILCAGPCLHQKHD 161
A Q N G RIDHIL C D
Sbjct: 211 AWQRNNGIRIDHILMTPQCADLMQD 235
>gi|223039251|ref|ZP_03609541.1| exodeoxyribonuclease III [Campylobacter rectus RM3267]
gi|222879612|gb|EEF14703.1| exodeoxyribonuclease III [Campylobacter rectus RM3267]
Length = 256
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + G+ LFN+Y P +D R+ +K+ F+ + L+ QG+ + G
Sbjct: 86 DDEGRVLEHRFGNVALFNIYFPNG-QKDEARLAYKMDFYAKFLAYAQELVKQGKDVIFCG 144
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D+N A ID + + + F R W ++ F D FR + +AY+ W
Sbjct: 145 DVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVSH---GFIDTFRHVRGDAVDAYSWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
A N G RID+ + + D
Sbjct: 202 SYRFNARAKNVGWRIDYFFISASLKDRLKD 231
>gi|169787216|gb|ACA80047.1| putative DNA lyase [Colletotrichum caudatum]
gi|169787218|gb|ACA80048.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|342214112|ref|ZP_08706820.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
gi|341595797|gb|EGS38436.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
Length = 175
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F L Y P + E R+++++++ V + + L + + + G
Sbjct: 10 DQEGRVITAEYEKFYLVTCYTPNSQRE-LARLEYRMEW-EVAFREYLLALDAKKPVILCG 67
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSN 134
DLN+A ID + + F R + E F D FR +P+ +AY+ W
Sbjct: 68 DLNVAHQEIDLKNPKTNRKNAGFSDEEREKMTELLAAGFTDTFRYLYPDAVDAYSWWSYM 127
Query: 135 TGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
A + N G RID+ L + + + + H
Sbjct: 128 GKARERNVGWRIDYFLVSNSIADKIQEAKIH 158
>gi|217969119|ref|YP_002354353.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
gi|217506446|gb|ACK53457.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
Length = 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGR + D G + ++Y P + S R Q K F + L G+ + V
Sbjct: 89 IDAEGRFLQLDFGKLSVVSLYLP-SGSSSAERQQVKFDFMDRFLPHMDQLFQSGQEVVVC 147
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA-YT 129
GD NIA D + + + F R W + E G + DV+R HPE EA YT
Sbjct: 148 GDWNIAHREADLKNWKSNQKNSGFLPEERAWLGRLFDEQG--WIDVYRRLHPEATEACYT 205
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A N G R+D+
Sbjct: 206 WWSNRGQAWAKNVGWRLDY 224
>gi|169787278|gb|ACA80078.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 58/227 (25%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + +Y P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLRVMYGIGIEEHDQEGRVITLEFENVFVMTIYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSM 105
L + L + + + + GDLN+A ID R +AG D + F S
Sbjct: 124 EEALLS-YILELDKKKPVILCGDLNVAHQEIDLKNPKANRKNAGFSDQERGAF-----SR 177
Query: 106 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
L+E+G + D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 178 LLEAG--YVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED---- 231
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212
G+S + GSDH PV + +
Sbjct: 232 ----------------------------AGISKDVMGSDHCPVELII 250
>gi|399573816|gb|AFP49247.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 226
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|45198534|ref|NP_985563.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|44984485|gb|AAS53387.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|374108792|gb|AEY97698.1| FAFR016Wp [Ashbya gossypii FDAG1]
Length = 558
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 38/188 (20%)
Query: 2 EGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQK 59
+GL S ++DSEGRC++ + ++ +VY P A+S +T + F+L+F L K
Sbjct: 170 DGLPYGSDANAQELDSEGRCLLVELACKVVVISVYCP-ANSMNTEEGEVFRLRFLKTLFK 228
Query: 60 RWEFLLCQGRRIFVVGDLNIAPAAIDR--------------CDAGP----------DFAK 95
R + G+R+ ++GDLN+ ID CD +F
Sbjct: 229 RVRNIENLGKRVVLMGDLNVCRDLIDHASCITRNNIKINPDCDGAVLERIYQEEAREFIY 288
Query: 96 NEFRIWFR---SMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGT 144
RI R ML++S G D R +R + YT W + + NYG+
Sbjct: 289 EPLRIGRRLLNEMLIDSIIPDLAEKGVLIDSTRYAQGRKRLKMYTVWDTYRNSRPANYGS 348
Query: 145 RIDHILCA 152
R+D+IL +
Sbjct: 349 RVDYILVS 356
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
++ PLCK H + V + K FG++F+ C R G + +A+CG+F+W
Sbjct: 508 SNAPLCK-HGDRSVLKT-SKTSTNFGKQFWTCKRPRGAPEDIKASCGFFQW 556
>gi|383455946|ref|YP_005369935.1| exodeoxyribonuclease III [Corallococcus coralloides DSM 2259]
gi|380734664|gb|AFE10666.1| exodeoxyribonuclease III [Corallococcus coralloides DSM 2259]
Length = 261
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
++D+EGR G + N Y P + +D RI FKL F+ L R E L +R+
Sbjct: 87 EMDAEGRLQFARFGKLTVVNGYFPNGNGKDRDLSRIPFKLDFYRRLFARLEKPLRDNQRV 146
Query: 72 FVVGDLNIAPAAID-------RCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 122
V+GD N A ID R +G P+ + EF W R+ V D FR +
Sbjct: 147 LVMGDFNTAHQDIDLARPRENRETSGFRPE-ERAEFDRWIRAGWV-------DTFRHFNA 198
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
Y+ W G + N G RID++L L
Sbjct: 199 AGGH-YSWWSQRAGVREKNIGWRIDYVLATPAAL 231
>gi|169787300|gb|ACA80089.1| putative DNA lyase [Colletotrichum miscanthi]
Length = 233
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L F + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGFLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
gi|151279863|gb|ABR88273.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
Length = 259
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+EGR V D G + +VY P S + ++ K +F V L QGR +
Sbjct: 88 EFDAEGRYVQCDFGKLSVISVYCPSGSSSEERQLA-KFRFMDVFLPHLLELKAQGRDFVI 146
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP-ERREAY 128
GD NIA ID + + + F R W + E G DV+R HP E Y
Sbjct: 147 CGDWNIAHNEIDLKNFKGNRKNSGFLPEERAWLSRVFDEVG--LVDVYRRLHPTTTEECY 204
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 158
T W + A N G RID+ + A P L +
Sbjct: 205 TWWSNRGQAYAKNVGWRIDYQV-ATPALAE 233
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK+E L + D EGR + + + VY P + +E R+ +++++
Sbjct: 66 GTALFSKEEPLSVSYGIGIPEHDREGRVISAEFPDCYILTVYVPNSQNE-LQRLSYRMEW 124
Query: 54 FHVLQKRWEFLLC--QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSML 106
+ E++L + + + GDLN+A ID + + F +E R F S L
Sbjct: 125 EDAFR---EYILSLEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDE-RAKF-SRL 179
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
++ G + D FR HPE R+AY+ W T A + N G RID+ + +
Sbjct: 180 LDCG--YLDSFRFLHPEERDAYSWWSYRTKARERNVGWRIDYFVVS 223
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + + F VY P + +E R+Q++ +F L+K L + +
Sbjct: 86 DKEGRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLKK-----LEAKKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG +E R F +L F D FR +PE+
Sbjct: 141 FCGDLNVAHREIDLKNPKTNRKNAG---FTDEERGKFTELL---SAGFIDTFRYFYPEQE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
Y+ W A N G RID+ C CL +
Sbjct: 195 GIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + F + VY P + SE R+++++++ + + L + + V G
Sbjct: 86 DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDF-RNYLLELSSKKGVVVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +++F S L+ SG F D FR +P+
Sbjct: 144 DLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRYFNPDLEGI 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|399573794|gb|AFP49236.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573796|gb|AFP49237.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573798|gb|AFP49238.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573800|gb|AFP49239.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573802|gb|AFP49240.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + F + VY P + +E R+ +++ +F L K L + + +
Sbjct: 86 DQEGRVITLEFEDFYMVTVYTPNSKNE-LERLDYRMVWEDEFRSYLAK-----LNEAKPV 139
Query: 72 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123
V GD+N+A ID R +AG D +++F + L+++G F D FR +P+
Sbjct: 140 VVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKF-----TELLKAG--FTDSFRYLYPD 192
Query: 124 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
R AY+ W A + N G RID+ + + Q + + H
Sbjct: 193 RLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|323310178|gb|EGA63370.1| Apn2p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 105/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+++F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKTADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L V P + P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDIVDDRIEPGTTXVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 411
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F VY P + SE R+ +++++ F K+ E + + +
Sbjct: 86 DQEGRVITCEFEDFYFVTVYTPNSQSE-LARLDYRMKWEDDFRAYLKKLE----KKKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GDLN+A ID R +AG D + +F + L+++G F D FR +P++
Sbjct: 141 VTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FIDTFRYFYPDQ 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
Y+ W A N G RID+ C CL +
Sbjct: 194 EGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|404379070|ref|ZP_10984141.1| exodeoxyribonuclease III (xth) [Simonsiella muelleri ATCC 29453]
gi|294483422|gb|EFG31107.1| exodeoxyribonuclease III (xth) [Simonsiella muelleri ATCC 29453]
Length = 259
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
K D+EGR V D GH + ++Y P S + R +K +F L GR + V
Sbjct: 87 KFDNEGRFVRADFGHLSVISLYLPSGTSAEE-RQAYKYEFLDAFYPLLAELKASGRDVVV 145
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W ++ + G + D++R+ +P+ YT
Sbjct: 146 CGDWNIAHQNIDIKNWKGNLKNSGFLPEEREWIGHVITKLG--WVDIWRTLYPD-VAGYT 202
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 181
W + A + G RID+ + + H + V + +++DY
Sbjct: 203 WWSNRGQAYANDVGWRIDYQMVTPNLATKAHTAHVYKEVKFS-DHAPLVVDY 253
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ K D+EGR + ++ F L N Y P + S + ++++ + V +++ L + + +
Sbjct: 84 IAKHDTEGRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDFQKYLVELDKKKPV 143
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 130
GDLN+A ID + + F I R+ + F D +R +P + A+T
Sbjct: 144 VWCGDLNVAHTEIDLKNPKTNTKSAGFTIQERTSFGDFLNKGFIDSYRHYNPGKEGAFTF 203
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W GA N G R+D+ + +
Sbjct: 204 WTYMGGARAKNVGWRLDYFVVS 225
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 53/203 (26%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ F L Y P + +E R+ +++Q+ F KR L + + +
Sbjct: 90 DHEGRVITLEYDAFYLVTCYTPNSQNE-LARLPYRMQWEEDFLAFLKR----LDEVKPVI 144
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG F+ E + L+ SG F D FR +P++
Sbjct: 145 VCGDLNVAHEEIDLKNPKTNRKNAG--FSDEERAK--MTTLLNSG--FTDTFRYFYPDKE 198
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
Y+ W A + N G RID+ + + CL +K LQS
Sbjct: 199 GIYSWWSYRFKAREKNAGWRIDYFITS-RCLDEK--LQS--------------------- 234
Query: 186 PGNAPRWKGGMSTRLEGSDHAPV 208
G+ T + GSDH PV
Sbjct: 235 --------AGIHTEVYGSDHCPV 249
>gi|449016247|dbj|BAM79649.1| similar to DNA-(apurinic or apyrimidinic site) lyase ARP
[Cyanidioschyzon merolae strain 10D]
Length = 411
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR-IFVV 74
D+EGRC++ ++ +L NVY P + R+ +++Q + + + L RR I +
Sbjct: 147 DAEGRCIVYEYPDLVLVNVYVPNSGLRSCERLAYRVQEWDSALRDYLRQLAATRRSIILC 206
Query: 75 GDLNIA-----PAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP-ERREAY 128
GD+N+A +++ C F +E R FR L E+G D F + H E +
Sbjct: 207 GDMNVALDDRDVYSVEACRGCAGFTSDE-RESFRRTLSEAG--LVDAFMALHGNEATPRF 263
Query: 129 TCWP--SNTGAEQFNYGTRIDHILCAGPCLHQ---KHDLQSHNFVTCHVNECDI----LI 179
T W + G + N G RID + + Q + HN + D +
Sbjct: 264 TFWDYRDSMGGVRRN-GWRIDLFCVSAAMVGQGRTPRQVLRHNDASAEACTADTSPQSMA 322
Query: 180 DYKRWKPGNA-PRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQ 238
WK PR + GSDH PV M L VP+ +
Sbjct: 323 TESVWKVVQVRPR------PDIYGSDHCPVEMVLAFVPDAEASA-------------AFS 363
Query: 239 QTLVSVLMKREVAK 252
Q LV+V +RE A+
Sbjct: 364 QPLVNVPERRESAE 377
>gi|189466093|ref|ZP_03014878.1| hypothetical protein BACINT_02463 [Bacteroides intestinalis DSM
17393]
gi|189434357|gb|EDV03342.1| exodeoxyribonuclease III [Bacteroides intestinalis DSM 17393]
Length = 254
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 16/172 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D G + +VY P S D R FK+ + Q+ L ++ + G
Sbjct: 89 DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTGLRKSRPKLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI ID D + + F R W L F D FR HPE++E YT W
Sbjct: 148 DYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILC---AGPCLHQKHDLQSHNFVTCHVNECDILID 180
+ N G RID+ + P L + L H + C +L+D
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVTELVRPLLREARILND----AVHSDHCPMLLD 251
>gi|169787198|gb|ACA80038.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787210|gb|ACA80044.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787260|gb|ACA80069.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787306|gb|ACA80092.1| putative DNA lyase [Colletotrichum hanaui]
Length = 233
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|103487661|ref|YP_617222.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
gi|98977738|gb|ABF53889.1| Exodeoxyribonuclease III [Sphingopyxis alaskensis RB2256]
Length = 256
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D + R + D + ++Y P + + + +KL++ L++R LL + G
Sbjct: 87 DEQSRYLEADAHGIRVASIYLPNGNPQPGPKFDYKLRWMARLRERARMLLAAEIPTVLAG 146
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFR-IWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
D N+ P D R A + E R WFR + G + D RS+HP +T
Sbjct: 147 DYNVIPHDDDVWDPRAMATDALMQPESRDAWFRLL----GDGWTDALRSRHPA-GHVWTY 201
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
W GA Q ++G RIDH+L + P L +
Sbjct: 202 WDYQAGAWQRDHGFRIDHLLLS-PALADR 229
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ F L VY P + +D R+ +++ + + + L + + + V G
Sbjct: 86 DTEGRVITLEYTDFYLVTVYVPNS-QDDLRRLGYRMTWEDDF-RAYLVELDKKKPVIVCG 143
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID R +AG +E R F+ +L F D FR HP++R+ Y
Sbjct: 144 DLNVAHQEIDLKNPKSNRRNAG---FTDEERGKFQELL---DAGFIDTFRYFHPDQRDIY 197
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
+ W A + N G RID+ + +
Sbjct: 198 SWWSYRFKARERNSGWRIDYFVTS 221
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + ++ F L VY P + + +R+ +++++ + + L + + + V G
Sbjct: 86 DHEGRVITCEYEDFYLVCVYTPNS-KDGLLRLDYRMEWEDAF-RTYLHKLNETKSVLVCG 143
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +N+ S+L++SG F D +R +PE+
Sbjct: 144 DLNVAHKEIDLKNPKTNRRNAGFTDEERNKM-----SVLLDSG--FIDSYRYLYPEQEGV 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFK 50
G FSK+E L + D EGR + + + L VY P + +E R+ ++
Sbjct: 66 GTAVFSKEEPLSVSYGIGIEEHDQEGRVITLEFDTYYLVTVYTPNSQNELARLPYRMTWE 125
Query: 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
F L+ L + + + GDLN+A ID R +AG D + +F
Sbjct: 126 EAFLAYLKG-----LEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKF---- 176
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 162
S ++E+G F D +R +PE+ Y+ W A + N G RID+ C CL
Sbjct: 177 -SQILENG--FIDTYRYFYPEQEGVYSWWSYRFRAREKNAGWRIDY-FCVSECLK----- 227
Query: 163 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 208
D L+D + + T + GSDH PV
Sbjct: 228 -------------DRLVDAR-------------IHTEITGSDHCPV 247
>gi|169787230|gb|ACA80054.1| putative DNA lyase [Colletotrichum axonopodi]
Length = 233
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|383791011|ref|YP_005475585.1| exodeoxyribonuclease III [Spirochaeta africana DSM 8902]
gi|383107545|gb|AFG37878.1| exodeoxyribonuclease III [Spirochaeta africana DSM 8902]
Length = 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 12 LLKIDSEGRCVITDHG------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 65
L + D EGR +I D+ + N Y P + E R+ +KL F + +
Sbjct: 85 LPEFDDEGRVLIIDYPAVNGSQELTVINAYFPNS-QEAGKRLDYKLAFCAAMLDICNEIT 143
Query: 66 CQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
GR + + GD NIA ID R P + E R W S L + D FR
Sbjct: 144 ASGRNLVLCGDYNIAHTPIDLANPERNTENPGYLPEE-RAWMDSFL---AAGYIDTFRLF 199
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
P+ YT W GA + N G RID+ C P L +
Sbjct: 200 TPDGGH-YTWWSYRFGARERNIGWRIDY-HCVNPSLRDR 236
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + + L VY P + E+ R+ +++++ F K+ E + + +
Sbjct: 87 DHEGRVITLELESYYLITVYTPNS-QEELRRLDYRMKWDDDFRAYLKKLE----EKKPVI 141
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GDLN+A ID R +AG +E R F ++L ESG F D FR +PE+
Sbjct: 142 VCGDLNVAHKEIDLKNPKTNRKNAG---FTDEERAKFTTLL-ESG--FTDTFRYFYPEQE 195
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166
Y+ W A + N G RID+ L + + Q H
Sbjct: 196 GIYSWWSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHT 236
>gi|169787258|gb|ACA80068.1| putative DNA lyase [Colletotrichum paspali]
gi|169787304|gb|ACA80091.1| putative DNA lyase [Colletotrichum paspali]
Length = 233
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
IDSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 IDSEGRCVVLEFEAFVLIGTYSPA--TRDSTRDDFRLGYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + + F L NVY P + + R+ +++ + V +K + L + + + + G
Sbjct: 87 DTEGRVITLEFKEFYLVNVYTPNS-KQGLERLDYRMVWEDVFRKYLK-ELEEKKPVIICG 144
Query: 76 DLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
DLN+A ID R +AG D +N+ S L+E+G F D +R +P
Sbjct: 145 DLNVAHEDIDLKNPKANRKNAGFTDEERNKI-----SELLEAG--FIDTYRYFYPNTEGV 197
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
Y+ W A N G RID+ L + + D + H
Sbjct: 198 YSWWSYRFNARGNNAGWRIDYFLASESLKDKLVDAKIH 235
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ F VY P + SE R+++++ + K + L + + I V G
Sbjct: 86 DTEGRVITLEYDKFFFITVYTPNSGSE-LKRLEYRMSWEEDF-KNYLLELNKTKGIVVCG 143
Query: 76 DLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
DLN+A ID + + F + E R F +L F D FR +P+ AY+
Sbjct: 144 DLNVAHTEIDLKNPKSNTKNAGFTQEE-REKFTKLL---DAGFIDTFRYYNPDLTGAYSW 199
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W A + N G RID+ L +
Sbjct: 200 WSYRFNARKNNAGWRIDYFLVS 221
>gi|399573792|gb|AFP49235.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 53/207 (25%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + + F + VY P + E +R+ +++ + +K +L L + + + V
Sbjct: 86 DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKNLEKKKPVVV 141
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG D + +F + L++SG F D FR +P
Sbjct: 142 CGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRYFYPNLE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
+ Y+ W A + N G RID+ + + D + H
Sbjct: 195 QVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------------- 234
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCL 212
T++EGSDH PV + L
Sbjct: 235 ------------TQIEGSDHCPVVLIL 249
>gi|313147282|ref|ZP_07809475.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|423277611|ref|ZP_17256525.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
gi|424663743|ref|ZP_18100780.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|313136049|gb|EFR53409.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|404577433|gb|EKA82171.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|404586808|gb|EKA91367.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
Length = 253
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + D G + +VY P S D R FK+ + QK L + + G
Sbjct: 89 DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRPNLILCG 147
Query: 76 DLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI ID D + + F R W L F D FR+ +PE++E YT W
Sbjct: 148 DYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPEKQE-YTWW 203
Query: 132 PSNTGAEQFNYGTRIDHILCAGPC 155
+ N G RID+ + + P
Sbjct: 204 SYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|193215004|ref|YP_001996203.1| exodeoxyribonuclease III Xth [Chloroherpeton thalassium ATCC 35110]
gi|193088481|gb|ACF13756.1| exodeoxyribonuclease III Xth [Chloroherpeton thalassium ATCC 35110]
Length = 281
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D+E R V +L +Y PR + +D + KLQ L R + L+ G + +
Sbjct: 112 EFDAENRIVEAAFKQTVLIGIYTPRGEKDD--HYELKLQMLEQLTLRAQGLMQNGADVLI 169
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREAYTCW 131
GD N+A D + R R+ + + S G D+ R+ +P+ E +T W
Sbjct: 170 CGDFNVAHTEKDVHSSQNKPNATGLRPKERAAIDRLLSAG-LIDITRALYPDNSELFTWW 228
Query: 132 PSNTGAEQFNYGTRID 147
P GA + N G RID
Sbjct: 229 PYWKGAREKNLGWRID 244
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + ++ +F + VY P + +E R+ +++++ F K+ E + + +
Sbjct: 92 DHEGRVITLEYENFYMVTVYTPNSQNE-LARLDYRMKWEDDFRAYLKKLE----ENKPVI 146
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
V GD+N+A ID R +AG + E M V F D FR +P++
Sbjct: 147 VCGDMNVAHNEIDLKNPKTNRKNAGFTDEERE------KMTVLLDDGFIDTFRYFYPDQE 200
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
Y+ W A + N G RID+ L + + D + H
Sbjct: 201 NIYSWWSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIH 240
>gi|401626731|gb|EJS44656.1| apn2p [Saccharomyces arboricola H-6]
Length = 524
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 108/283 (38%), Gaps = 77/283 (27%)
Query: 13 LKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
L++DSEGRCV+ + ++ +VY P + F+++F VL +R L G++I
Sbjct: 158 LELDSEGRCVMVELACGIVVISVYCPANSNLSEKGELFRMKFLKVLLRRIRNLDKMGKKI 217
Query: 72 FVVGDLNIAPAAIDRCDAGPDFA---------------------------KNEFRIWFRS 104
++GD+N+ ID D F+ + R F
Sbjct: 218 VLMGDVNVCRDLIDSADTLEQFSIPISDPMGGEELEARYRDKAMQFIINPETPHRRIFNQ 277
Query: 105 MLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
+L +S G D R R YT W S NYG+RID IL +
Sbjct: 278 ILSDSLLPDASKEGILIDTTRLIQTRNRLRMYTVWNSLKNLRPSNYGSRIDFILISSKF- 336
Query: 157 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG--- 213
K +++ N + DIL GSDH PVY L
Sbjct: 337 --KQLIKAGNILP------DIL-----------------------GSDHCPVYADLDLKD 365
Query: 214 ---EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 253
E+ I + STP +RY +R ++ + K+++ K+
Sbjct: 366 HKMELNTI-KVSTPKFEARYKYNLRN--HNVLEMFAKKDLNKE 405
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H E C+ + K P G++F++C R+ G + N E++CG+F+W
Sbjct: 478 PLCK-HGEQCILKTSKTPSNP-GKKFWICNRSRGDSGNTESSCGFFQWV 524
>gi|330999011|ref|ZP_08322736.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
gi|329575753|gb|EGG57279.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
Length = 295
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V + I+ ++Y P S + R Q K +F V++ R + LL GR + +
Sbjct: 125 EFDREGRYVEARFNNLIVVSIYFPSGSSSEE-RQQAKFRFLDVIKGRLDELLRDGRDVVL 183
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W L E + DVFR P R + +T
Sbjct: 184 CGDFNIAHKEIDIKNWKGNLKNSGFLPEERQWITDRLRE---GWQDVFRRLDP-RPDRFT 239
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A N G RID+
Sbjct: 240 WWSNRGRARINNVGWRIDY 258
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR + ++ +F VY P + SE R+++++ + K + L + + + V G
Sbjct: 86 DTEGRVITLEYDNFFFITVYTPNSGSE-LKRLEYRMSWEDDF-KDYLLTLNKDKGVIVCG 143
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 132
DLN+A ID + + F R + L+++G F D FR +P+ AY+ W
Sbjct: 144 DLNVAHTEIDLKNPKTNVKNAGFTPEEREKFTKLLDAG--FIDTFRYFNPDLTGAYSWWS 201
Query: 133 SNTGAEQFNYGTRIDHILCA 152
A + N G RID+ L +
Sbjct: 202 YRFNARKNNSGWRIDYFLVS 221
>gi|167860654|gb|ACA05109.1| exodeoxyribonuclease III [Flammeovirga yaeyamensis]
Length = 208
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 71/174 (40%), Gaps = 11/174 (6%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D EGR ++ + +F L N Y P S + R +FK QF + L +
Sbjct: 38 EIDTYDCEGRTILCEFENFTLINTYFPSGTSGEE-RQKFKYQFLDDYFEYIAKLKENYKN 96
Query: 71 IFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
+ V GD NI AID R F E R W + E G F D FR K E
Sbjct: 97 LVVCGDFNICHKAIDIHNPERNKNTSGFQPAE-REWVSKFINE--GGFIDAFR-KFDESP 152
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 179
Y+ W GA + N G RID+ + + Q HN H + C I I
Sbjct: 153 GKYSWWTYRAGARKKNLGWRIDYFMVQKEMENTLISSQLHN-EAVHSDHCPIEI 205
>gi|219685209|ref|ZP_03540029.1| exodeoxyribonuclease III [Borrelia garinii Far04]
gi|219673305|gb|EED30324.1| exodeoxyribonuclease III [Borrelia garinii Far04]
Length = 254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 53/207 (25%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + + F + VY P + E +R+ +++ + +K +L L + + + V
Sbjct: 86 DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKNLEKKKPVVV 141
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG D + +F + L++SG F D FR +P
Sbjct: 142 CGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRYFYPNLE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
+ Y+ W A + N G RID+ + + D + H
Sbjct: 195 QVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------------- 234
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCL 212
T++EGSDH PV + L
Sbjct: 235 ------------TQIEGSDHCPVVLIL 249
>gi|406990745|gb|EKE10369.1| Exonuclease III [uncultured bacterium]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 35/197 (17%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D + R + G + ++Y P + + + +KL F L + LL + + G
Sbjct: 86 DDQARYIEAVVGGMRVASIYVPNGTAVGSDKYVYKLDFLKHLYAHAQTLLTYDEALILGG 145
Query: 76 DLNIAPAAIDRCDAGP----DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI P+ D D + R RS++ DV R+ H +E YT W
Sbjct: 146 DFNITPSDEDVYDPQEWHEQILCSTQEREALRSIIYLG---VTDVLRASHQNAKELYTWW 202
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
GA Q N+G RIDH+L + Q D HV C++ K+W+
Sbjct: 203 DYRGGAFQNNFGLRIDHLLLSS----QAAD---------HVKSCEV---DKKWRAVE--- 243
Query: 192 WKGGMSTRLEGSDHAPV 208
+ SDHAP+
Sbjct: 244 ---------KASDHAPI 251
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRRIF 72
D EGR + + F + +Y P + R+ +++++ F KR L + + +
Sbjct: 87 DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LDEKKPVI 141
Query: 73 VVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
GDLN+A ID + P F+ E R F +L E F D +R +PE+ A
Sbjct: 142 FCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEEG---FIDTYRYLYPEQEGA 197
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169
Y+ W GA N G R+D+ + + H+ D + ++ VT
Sbjct: 198 YSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVT 239
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRR 70
ID EGR + ++ F L Y P + D R+ ++L F L+ L + +
Sbjct: 85 IDQEGRVIALEYSKFYLVTCYTPNS-KRDLSRLPYRLSWEEHFLAYLKN-----LEEKKP 138
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 127
+ + GDLN+A ID +A + + F R + L+ SG F D FR +PE +
Sbjct: 139 VILCGDLNVAHTEIDLKNAKSNHGNSGFTQEERGKMTTLLSSG--FTDSFRYLYPETTDK 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 182
Y+ W + N G RID+ + + + + HN + + C + ++ K
Sbjct: 197 YSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEILGS-DHCPVFLELK 250
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTV-------RIQFKLQF---FHVLQKRWEFLL 65
D+EGR + ++ F L NVY P +S++++ R+ +++++ F KR L
Sbjct: 97 DNEGRVITLEYPEFYLVNVYTP--NSQESLPGEVKPKRLGYRMKWEEDFRAYIKR----L 150
Query: 66 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHP 122
+ + + V GDLN+A ID +A + F R ++L+++G F D FR+ +P
Sbjct: 151 NETKPVIVCGDLNVAHQEIDIKNAKTNRNNAGFTDEEREKMTILLDNG--FIDTFRTMYP 208
Query: 123 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
E+ Y+ W A + N G RID+ L + +Q D + H
Sbjct: 209 EQV-IYSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIH 250
>gi|163782364|ref|ZP_02177362.1| exodeoxyribonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159882397|gb|EDP75903.1| exodeoxyribonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 258
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D + R + G + NVY P D T + +KL+F+ L + I +V
Sbjct: 85 FDQQKRVISAKVGEIRVINVYAPHGDLRGTEKFYYKLEFYDRLLRYLSDNFSPEEPICMV 144
Query: 75 GDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
GD N+A ID D P+ K+ E R F +L F D FR +P+R + +
Sbjct: 145 GDFNVAREDIDVFD--PELLKDTIGTMKEEREAFERVL---KWGFIDAFRYLYPDRVQ-F 198
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCL 156
T W G + G RID+IL P L
Sbjct: 199 TWWDYIGGMIWKDKGMRIDYILITEPLL 226
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR--IFV 73
D EGR + + F L N Y P A E T R+ +++++ L+ +LL R +
Sbjct: 86 DREGRAITLEFEDFYLVNCYVPNAQRELT-RLDWRMEWEDALRA---YLLELDSRKPVIY 141
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTC 130
GDLN+A ID +A + F R + L+E+G F D FR +P++ AY+
Sbjct: 142 CGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQLLEAG--FVDSFRHLYPDKTGAYSW 199
Query: 131 WPSNTGAEQFNYGTRIDHILCA 152
W A + N G RID+ L +
Sbjct: 200 WSYMFHAREKNAGWRIDYFLVS 221
>gi|383647890|ref|ZP_09958296.1| exodeoxyribonuclease III [Sphingomonas elodea ATCC 31461]
Length = 256
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 36/201 (17%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+ R + + G I+ +Y P + + + +KL++ L R LL + R + G
Sbjct: 87 DAHSRYIEAEVGDLIIGGLYLPNGNPQPGPKFDYKLRWMDRLYDRAAQLLAEERPAILAG 146
Query: 76 DLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D N+ P D R A + E R +R +L + + D R++ P + +T W
Sbjct: 147 DFNVIPNDDDTFSIRAMAEDALMQPESRERYRKLLAQ---GWTDALRTRFP-KGGVWTFW 202
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 191
GA Q + G RIDH+L + + F V++ DY+
Sbjct: 203 DYQAGAWQRDAGFRIDHLLLSPQA--------ADRFTGAGVDK-----DYR--------- 240
Query: 192 WKGGMSTRLEGSDHAPVYMCL 212
R + SDHAP ++ L
Sbjct: 241 ------GREKASDHAPTWVTL 255
>gi|303256316|ref|ZP_07342332.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
gi|302861045|gb|EFL84120.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
Length = 262
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 73
+ D EGR V + I+ ++Y P S + R Q K +F V++ R + LL GR + +
Sbjct: 92 EFDREGRYVEARFNNLIVVSIYFPSGSSSEE-RQQAKFRFLDVIKGRLDELLRDGRDVVL 150
Query: 74 VGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD NIA ID + + + F R W L E + DVFR P R + +T
Sbjct: 151 CGDFNIAHKEIDIKNWKGNLKNSGFLPEERQWITDRLRE---GWQDVFRRLDP-RPDRFT 206
Query: 130 CWPSNTGAEQFNYGTRIDH 148
W + A N G RID+
Sbjct: 207 WWSNRGRARINNVGWRIDY 225
>gi|209964343|ref|YP_002297258.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
gi|209957809|gb|ACI98445.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
Length = 257
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D + R V G + ++Y P + + + +KL++ L+ LL + + G
Sbjct: 86 DVQARYVEGTIGGLRIASLYLPNGNPVGSEKYPYKLRWMERLKAHVGELLAREVPFVLGG 145
Query: 76 DLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D N+ PA D D +G + E R FR +L + FR+ HP R AYT W
Sbjct: 146 DYNVIPAPEDVYDPEGWSGDALFRRETREKFREIL---NLGLTEAFRALHPAARHAYTFW 202
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
GA + G RIDH L +
Sbjct: 203 DYQAGAWPRDLGLRIDHFLLS 223
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 16 DSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D+EGR + + +F NVY P R + R++++ F L K L + +
Sbjct: 86 DAEGRVITLEFENFYFVNVYVPNSQRGLTRLDYRMKWEDDFREYLIK-----LDGIKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPER 124
GD N+A ID R +AG F E R + E S F D FR +P++
Sbjct: 141 CCGDKNVAHQEIDLKNPKSNRKNAG--FTDEE-----RQKMTELLNSGFIDAFRYLYPDK 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 180
++AYT W A + N G RID+ + + + D++ H+ V + C +L+D
Sbjct: 194 KDAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVMGS-DHCPVLLD 248
>gi|169787480|gb|ACA80179.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ +
Sbjct: 106 LDSEGRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|169787414|gb|ACA80146.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ +
Sbjct: 106 LDSEGRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 48/203 (23%)
Query: 18 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL--QFFHVLQKRWEFLLCQGRRIFVVG 75
EGR ++ ++ F L N Y P + + K+ FF K+ L + + G
Sbjct: 214 EGRLIVAEYDKFYLINAYVPNSGRGLVNLAKRKIWDDFFIDYIKQ----LDASKAVIYAG 269
Query: 76 DLNIAPAAIDRCDAGPDFAKNE---FRIWFR---SMLVESGGSFFDVFRSKHPERREAYT 129
DLN+A ID A P +N+ F R + L+++G F DV+RS HP++ AYT
Sbjct: 270 DLNVAHEEIDL--ANPKTNRNKTAGFTDQERGDFTRLLQAG--FVDVYRSLHPDKTGAYT 325
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W + A N G R+D+ + + + + V C +N
Sbjct: 326 FWSTMHNARATNIGWRLDYFVVSERLMDK--------VVKCEIN---------------- 361
Query: 190 PRWKGGMSTRLEGSDHAPVYMCL 212
+R+ GSDH P+ + +
Sbjct: 362 --------SRVMGSDHCPLTLQI 376
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 14 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-----LCQG 68
K D EGR + + + L VY P + + D + +L + L+ +FL L
Sbjct: 89 KHDQEGRVITAEFEDYYLVTVYTPNSQNHDENKRPRRLDY-RTLEWDVDFLAYVKGLEVT 147
Query: 69 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
+ + GDLN+A ID R +AG D + F ++E+G F D FR
Sbjct: 148 KPVVFCGDLNVAHTEIDLANPKTNRKNAGFTDEERGRF-----DAIIEAG--FIDTFRHL 200
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+P+R E Y+ W A Q N G RID+ + +Q D
Sbjct: 201 YPDRTEQYSWWSYRAAARQRNIGWRIDYFCVSDAVKNQIRD 241
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 32/170 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L + D+EGR + + + VY P A +E RI +++ +
Sbjct: 64 GTALFSKKEPLSVSYGLGIAEHDTEGRVITAEFEEAYVVTVYTPNAQNE-LARIDYRMAW 122
Query: 54 ---FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWF 102
F K+ E + + + + GDLN+A ID R +AG D + +F
Sbjct: 123 EDAFKAYLKKLE----ENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGKF---- 174
Query: 103 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
L+E+G F D FR +P+ AY+ W A + N G RID+ L +
Sbjct: 175 -GELLEAG--FIDTFRYFYPDLEGAYSWWSYRFKAREKNTGWRIDYFLAS 221
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ K D+EGR + ++ F + N Y P A + R+ ++++ + V + + L + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
T W G N G R+D+ + +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFVVS 329
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + ++ +F + VY P + +E R+ +++++ + E+L L Q + + V
Sbjct: 97 DHEGRVITLEYDNFYMVTVYTPNSQNE-LARLDYRMKWEDDFR---EYLKQLEQTKPVVV 152
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GD+N+A ID R +AG D + +F S L++SG F D FR +P+
Sbjct: 153 CGDMNVAHTEIDLKNPKTNRKNAGFTDEEREKF-----STLLDSG--FVDTFRFFNPDAE 205
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 206 GIYSWWSYRFKAREKNAGWRIDYFLTS 232
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + L VY P +S+D ++ +L +
Sbjct: 65 GTAIFSKIEPLRVTYGMNMPDHDQEGRLITAEFPDYYLCTVYTP--NSQDGLK---RLVY 119
Query: 54 FHVLQKRWEFLLCQGRRI---FVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSM 105
++ + L + RR+ + GDLN+A ID + P F E R F+++
Sbjct: 120 RQSWERDFLTYLQELRRVKPVIICGDLNVAHREIDLKNPAANRKNPGFTDEE-RAEFQTL 178
Query: 106 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
L F D FR +PE+ E Y+ W A N G RID+ L +
Sbjct: 179 L---DAGFVDTFRYFYPEKPEEYSWWSYRFNARSRNAGWRIDYFLVS 222
>gi|193211783|ref|YP_001997736.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
gi|193085260|gb|ACF10536.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
Length = 253
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 11 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
E+ D E R ++ F L Y PR + + + KL++ L++ L+ +G+
Sbjct: 83 EVPPFDVENRTLVLHAPQFTLIGTYVPRGNGAEHYAV--KLRYLADLKEYIASLIAEGQE 140
Query: 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERREA 127
+ + GD+N+A ID + R RS + +E G D+ R +P++++
Sbjct: 141 VILAGDMNVALTEIDVHRSQNKPGATGLRPEERSAIEAHLELG--LHDIVRELNPDKKDL 198
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
+T WP+ A + N G RID I + P L K
Sbjct: 199 FTWWPNWKFARERNLGWRIDCIYLS-PALAGK 229
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 53/207 (25%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR + + F + VY P + E +R+ +++ + +K +L L + + + V
Sbjct: 86 DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKNLEKKKPVVV 141
Query: 74 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG D + +F + L++SG F D FR +P
Sbjct: 142 CGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FVDTFRYFYPNLE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185
+ Y+ W A + N G RID+ + + D + H
Sbjct: 195 QVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------------- 234
Query: 186 PGNAPRWKGGMSTRLEGSDHAPVYMCL 212
T++EGSDH PV + L
Sbjct: 235 ------------TQIEGSDHCPVVLIL 249
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLCQGRRIF 72
D GR + ++ F L NVY P + V ++ ++ + F K+ + L + +
Sbjct: 541 DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL----KPVV 595
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCW 131
+ GD+N++ ID + + F R + E G F D FR +P+R+ AYT W
Sbjct: 596 ICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFW 655
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 179
A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 656 TYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 702
>gi|189485031|ref|YP_001955972.1| exodeoxyribonuclease III [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170286990|dbj|BAG13511.1| exodeoxyribonuclease III [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D+EGR + D FI+FNVY P + R+++K++F+ L K + + + + +
Sbjct: 88 FDNEGRIIRLDFKDFIIFNVYFPNGGASQE-RLKYKMEFYDYLIKYLK--QFKDKTVIIC 144
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERREAYTCW 131
GD N A +ID + + F R LV SG F D FR + E YT W
Sbjct: 145 GDYNTAHFSIDLARPKENEKVSGFMPEEREKLDNLVSSG--FIDTFRYFNKEPGN-YTWW 201
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
T A N G RIDH +
Sbjct: 202 DYKTAARSRNIGWRIDHFFMS 222
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQGRR--IF 72
D EGR + + F L VY P +S+D + R+ +++Q+ + +LL R +
Sbjct: 86 DKEGRVITLEMPDFFLVTVYTP--NSQDGLKRLDYRMQWEEAFRA---YLLQLDTRKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 124
V GDLN+A ID R +AG D + +F I L++SG F D FR +P+R
Sbjct: 141 VCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFRFFYPDR 193
Query: 125 REAYTCWPSNTGAEQFNYGTRIDHILCA 152
Y+ W A + N G RID+ L +
Sbjct: 194 EGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|169787476|gb|ACA80177.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ +
Sbjct: 106 LDSEGRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILT 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRDEMDTCNV 178
>gi|389877363|ref|YP_006370928.1| exodeoxyribonuclease III Xth [Tistrella mobilis KA081020-065]
gi|388528147|gb|AFK53344.1| exodeoxyribonuclease III Xth [Tistrella mobilis KA081020-065]
Length = 277
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 3 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 62
GL F ++ I EG I D G + +VY P S + + +KL F
Sbjct: 79 GLPGFEDEQARWI--EGTVAIGDQGVRVA-SVYVPNGQSVTSEKFPYKLAFLDAFVSHAR 135
Query: 63 FLLCQGRRIFVVG-DLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVF 117
+L R V+G D NIAP A D D AG E R FR++L + + D F
Sbjct: 136 SMLGDASRPAVIGGDFNIAPEAGDLYDPKGWAGDVLFHPEERRRFRAVLHQG---WTDAF 192
Query: 118 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
R+ H E Y+ W G Q ++G RIDH+L +
Sbjct: 193 RALHAEAGR-YSWWDYRAGMWQKDHGLRIDHLLLS 226
>gi|347736249|ref|ZP_08868938.1| exodeoxyribonuclease III [Azospirillum amazonense Y2]
gi|346920322|gb|EGY01471.1| exodeoxyribonuclease III [Azospirillum amazonense Y2]
Length = 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID+EGR V G + +VY P S + R K F L L GR++ +
Sbjct: 93 IDAEGRYVEAVFGDLSVVSVYLPSGSSGEH-RQAAKFAFMDRLLPHMAALAQAGRQVILC 151
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE-RREAYT 129
GD NIA ID + + + F R W + E G + DV+R +PE E YT
Sbjct: 152 GDWNIAHKEIDLKNWKGNLKNSGFLPEERAWLTRLFDEQG--WVDVYRRLYPEVGEEGYT 209
Query: 130 CWPSNTGAEQFNYGTRIDHILC 151
W + A N G RID+ +
Sbjct: 210 WWSNRGQAWAKNVGWRIDYQIA 231
>gi|169787272|gb|ACA80075.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787318|gb|ACA80098.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787322|gb|ACA80100.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787324|gb|ACA80101.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLA 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|375013291|ref|YP_004990279.1| exodeoxyribonuclease III [Owenweeksia hongkongensis DSM 17368]
gi|359349215|gb|AEV33634.1| exodeoxyribonuclease III [Owenweeksia hongkongensis DSM 17368]
Length = 252
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
ID EGR + D+G+ + +VY P + +R K+QF QK LL + + V
Sbjct: 88 IDLEGRIIRADYGNLSIMSVYIPSGT--NMLRQGLKMQFLADFQKHISELLKERPNLIVC 145
Query: 75 GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD NI AID + + + F R W S ++SG F D FR + E Y+
Sbjct: 146 GDYNICHKAIDIHNPIQNANSSGFLPEEREWV-SGFIDSG--FIDSFRYFNQEPHN-YSW 201
Query: 131 WPSNTGAEQFNYGTRIDHILCAGP 154
W A N G RID+ + + P
Sbjct: 202 WSYRANARNNNKGWRIDYNMASTP 225
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 47/204 (23%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLLCQGRRI 71
D EGR + + + VY P + +E R+ +++ +F L+K L + + +
Sbjct: 87 DKEGRVITAEFEDYYFVTVYTPNSKNE-LERLDYRMIWEDEFRSYLKK-----LEEKKPV 140
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
V GDLN+A ID + + F I R + L+E+G F D FR +P++ AY
Sbjct: 141 IVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFTELIENG--FIDTFRYFYPDKIHAY 198
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 188
+ W A + N G RID+ C L D L+D
Sbjct: 199 SWWSYRGNARKNNTGWRIDY-FCVSSSLK------------------DRLVD-------- 231
Query: 189 APRWKGGMSTRLEGSDHAPVYMCL 212
+ ++EGSDH PV + +
Sbjct: 232 -----AEIHDKVEGSDHCPVVLYI 250
>gi|163787138|ref|ZP_02181585.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
gi|159877026|gb|EDP71083.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
Length = 253
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR + D+ + + ++Y P ++ R+ K ++ ++ + L + + VV
Sbjct: 89 MDFEGRNIRVDYDNVSVMSMYLPSGTND--ARLAHKFEYMDLIHEYLNNLQKEKSNLVVV 146
Query: 75 GDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
GD NI AID + F E R W + ++SG F D FR HP+R+E Y+
Sbjct: 147 GDYNICHEAIDIHNPKMKGVSGFLPEE-REWLGN-FIDSG--FIDSFRYLHPKRQE-YSW 201
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT--CHVNECDILID 180
W + N G R+D+ + + P + +++ +T H + C IL++
Sbjct: 202 WSYRANSRANNKGWRLDYAMASKPL---QENIKRSVILTEAVHSDHCPILLE 250
>gi|421849785|ref|ZP_16282759.1| exodeoxyribonuclease III [Acetobacter pasteurianus NBRC 101655]
gi|371459402|dbj|GAB27962.1| exodeoxyribonuclease III [Acetobacter pasteurianus NBRC 101655]
Length = 247
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D R V + +L N+Y P +S KL+F + L R LL + + G
Sbjct: 71 DPAARYVEVNTQGVVLGNLYLPNGNSGGEQGYATKLEFLNALTARARLLLAEETDFALAG 130
Query: 76 DLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 131
D NI PA ID GP+ + + R +R +L D R+ HP AYT W
Sbjct: 131 DYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLLWL---GLTDALRALHPT-GAAYTFW 186
Query: 132 PSNTGAEQFNYGTRIDHILCA 152
A + + G RIDH+L +
Sbjct: 187 DYQARAWERDCGLRIDHMLLS 207
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-- 51
G F+K E L + D EGR + + F + VY P + +E R+ +++
Sbjct: 64 GTAIFTKKEPLSVSYGLGIEEHDQEGRVICLEFEDFYMVTVYTPNSKNE-LERLDYRMIW 122
Query: 52 --QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIW 101
+F + L K L + + + V GD+N+A ID R +AG D +N+F
Sbjct: 123 EDEFRNYLSK-----LNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNKF--- 174
Query: 102 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ L+++G F D FR +P+ AY+ W A + N G RID+ + + Q +
Sbjct: 175 --TELLQAG--FTDSFRYLYPDTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQE 230
Query: 162 LQSH 165
+ H
Sbjct: 231 AEIH 234
>gi|169787274|gb|ACA80076.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+DSEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ +
Sbjct: 106 LDSEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLA 163
Query: 75 GDLNIAPAAIDRCDA 89
GDLN+ +D C+
Sbjct: 164 GDLNVIRGEMDTCNV 178
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72
D EGR + + F VY P + SE R++++ F L K L + + +
Sbjct: 86 DKEGRVITLEFKEFYFVTVYTPNSQSELRRLEYRMEWERDFLAYLLK-----LQESKPVI 140
Query: 73 VVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125
GDLN+A ID R +AG +E R F +L ESG F D FR +P++
Sbjct: 141 CCGDLNVAHEEIDLKNPKTNRKNAG---FTDEERACFTKVL-ESG--FIDTFRYFYPDKE 194
Query: 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159
Y+ W A + N G RID+ + + P L +K
Sbjct: 195 GIYSWWSYRFKAREKNAGWRIDYFITS-PSLKEK 227
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D EGR + + + + VY P A RI +++Q+ L + L Q + + + G
Sbjct: 87 DQEGRVITLEFENMFVMTVYTPNA-KRGLERIDYRMQWEEDLLS-YILELDQKKPVILCG 144
Query: 76 DLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 128
DLN+A ID R +AG F+ E + R +E+G F D FR +P+ AY
Sbjct: 145 DLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--FLEAG--FIDSFRHVYPDLEGAY 198
Query: 129 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+ W GA N G RID+ + + Q D
Sbjct: 199 SWWSYRAGARDRNIGWRIDYFVVSERLKDQIED 231
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
D EGR + + +F L VY P +S+D + R+ +++ + +R+ L + + V
Sbjct: 86 DREGRVITLEMENFYLVTVYTP--NSQDGLKRLDYRMTWEDAF-RRYLLELDAKKPVLVC 142
Query: 75 GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 127
GDLN+A ID R +AG F E R F+++L F D FR +PE+
Sbjct: 143 GDLNVAHKEIDLKNPKTNRMNAG--FTDQE-REKFQTLL---DAGFIDTFRYFYPEQEGI 196
Query: 128 YTCWPSNTGAEQFNYGTRIDHILCAG 153
Y+ W A + N G RID+ L +
Sbjct: 197 YSWWSYRFRAREKNAGWRIDYFLASA 222
>gi|219684183|ref|ZP_03539127.1| exodeoxyribonuclease III [Borrelia garinii PBr]
gi|219672172|gb|EED29225.1| exodeoxyribonuclease III [Borrelia garinii PBr]
Length = 255
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+ + + G
Sbjct: 87 DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGKNVVICG 145
Query: 76 DLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
D NIA ID PD ++ E W L + F +F +K P YT
Sbjct: 146 DFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP---GYYT 199
Query: 130 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 189
W T A + N G RID+ + + F +V + IL
Sbjct: 200 WWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----------- 235
Query: 190 PRWKGGMSTRLEGSDHAPVYMCLGEV 215
++ GSDH PV++ L +V
Sbjct: 236 --------DKVMGSDHCPVFLELADV 253
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQKRWEFLLCQG 68
D+EGR + ++ F L NVY P + + R+ +++ + ++L+ R ++C
Sbjct: 88 DTEGRVITCEYEDFFLVNVYTPNS-KQKLERLDYRMVWEDEFHNYLNILRDRKPVIVC-- 144
Query: 69 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 120
GDLN+A ID R AG D +N+ S+L+ G + D FR
Sbjct: 145 ------GDLNVAHNEIDLKNPQSNRRSAGFTDEERNKM-----SLLLNDG--YIDTFRYF 191
Query: 121 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
+P++ + Y+ W A + N G RID+ L + D + H
Sbjct: 192 YPDKTDEYSYWSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIH 236
>gi|162456399|ref|YP_001618766.1| exodeoxyribonuclease III [Sorangium cellulosum So ce56]
gi|161166981|emb|CAN98286.1| exodeoxyribonuclease III [Sorangium cellulosum So ce56]
Length = 269
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 31 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 90
+ NVY P + T +KL + L+ E ++I + GD N+AP AID +
Sbjct: 103 VINVYVPNGQAVGTPAFAYKLAWLERLRSELEARYRPDQQIMICGDFNVAPEAIDVAEP- 161
Query: 91 PDFAKNEFRIWFR-------SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143
K E ++ F L+E G D FR+ HP +EAY+ W GA + N G
Sbjct: 162 ---KKWEGQVLFHPDERAALGRLMEWG--LVDAFRACHPA-KEAYSWWDYRMGAFRRNKG 215
Query: 144 TRIDHILCAGPCLHQKHDL 162
RID L P + D+
Sbjct: 216 LRIDLALVTRPLAARCTDV 234
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,395,058,063
Number of Sequences: 23463169
Number of extensions: 349745669
Number of successful extensions: 789688
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 3535
Number of HSP's that attempted gapping in prelim test: 781692
Number of HSP's gapped (non-prelim): 7050
length of query: 519
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 372
effective length of database: 8,910,109,524
effective search space: 3314560742928
effective search space used: 3314560742928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)