BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010035
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 115 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 174
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 279
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 280 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPAKQCPA 322
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 323 LCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 339 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 398
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 399 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 458
NK+P +DEK ER W+ +
Sbjct: 432 TVLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 459 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 50/264 (18%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-- 110
+LQ R E LL G + ++GDLN A ID DA F ++ R W S+L G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 111 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLMKRE 249
L +R+LP G Q ++ L+ E
Sbjct: 324 LCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)
Query: 4 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 54
++DF+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 55 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML----VE 108
+LQ R E LL G + ++GDLN A ID DA F ++ R W +L E
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 109 SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 165
SG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------------- 280
Query: 166 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 225
+ ++ID + + + GSDH PV L V +P P
Sbjct: 281 -------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPP 323
Query: 226 LASRYLPIIRGVQQTLVSVLM 246
L + +LP G Q ++ L+
Sbjct: 324 LCTCFLPEFAGTQLKILRFLV 344
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 42/208 (20%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFV 73
IDSEGRC++ D FIL VY P E+ R++++ F+ L++R E L+ +G R+I +
Sbjct: 131 IDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRERIERLIKEGNRKIIL 188
Query: 74 VGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFF-DVFRSKHPERRE 126
VGD+NI ID D ++ E R W R +L+ S D+ R +HP R+
Sbjct: 189 VGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKG 248
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
+TCW + NYGTRID+ L L V + DI+ +
Sbjct: 249 MFTCWNTRLNTRPTNYGTRIDYTLATPDLLP-------------WVQDADIMAE------ 289
Query: 187 GNAPRWKGGMSTRLEGSDHAPVYMCLGE 214
+ GSDH PVY+ L E
Sbjct: 290 -------------VMGSDHCPVYLDLKE 304
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 452 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 497
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 105/295 (35%), Gaps = 75/295 (25%)
Query: 6 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64
D + L++DSEGRCV+ + ++ +VY P + F+L+F VL +R L
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNL 210
Query: 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNE 97
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTP 270
Query: 98 FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHI 149
R F +L +S G D R R + YT W NYG+RID I
Sbjct: 271 HRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFI 330
Query: 150 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 209
L S C + DIL D + GSDH PVY
Sbjct: 331 LV------------SLKLERC-IKAADILPD-------------------ILGSDHCPVY 358
Query: 210 MCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 259
L + P Q P +RY +R ++ + K++ K+ K+
Sbjct: 359 SDLDILDDRIEPGTTQVPIPKFEARYKYNLR--NHNVLEMFAKKDTNKESNKQKY 411
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 3 GLEDFSKDELLKI---------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 53
G FSK E L++ D EGR + + + + VY P + RI +++Q+
Sbjct: 65 GTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNS-RRGLERIDYRMQW 123
Query: 54 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSML 106
L + L Q + + + GDLN+A ID R +AG F+ E + R
Sbjct: 124 EEALLS-YILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--F 178
Query: 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 161
+E+G F D FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 179 LEAG--FVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 12 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71
+ K D+EGR + ++ F + N Y P A + R+ ++++ + V + + L + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 128
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 129 TCWPSNTGAEQFNYGTRIDHILCA 152
T W G N G R+D+ + +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFVVS 329
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLCQGRRIF 72
D GR + ++ F L NVY P + V ++ ++ + F K+ + L + +
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL----KPVV 568
Query: 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCW 131
+ GD+N++ ID + + F R + E G F D FR +P+R+ AYT W
Sbjct: 569 ICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFW 628
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 179
A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 629 TYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + FIL Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFILVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F ML D FR +P
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGEML--QAVPLADSFRHLYPNTAY 261
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 262 AYTFWTYMMNARSKNVGWRLDYFLLS 287
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ ++ F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEYDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLTDSFRHLYPNTAY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
AYT W A N G R+D+ L + L
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLLSQSVL 292
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 75
D+EGR V + F L N Y P + + R+ ++++ + L + + + + G
Sbjct: 370 DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTG 428
Query: 76 DLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRSKHPERREAYTCW 131
DLN A ID + + F I F + L++ G F D FR +HP YT W
Sbjct: 429 DLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQHPGVV-GYTYW 485
Query: 132 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 176
G + N G R+D+ L + HD +++ +N D
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 526
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTAY 261
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 262 AYTFWTYMMNARSKNVGWRLDYFLLS 287
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----LLC--QGR 69
D EGR + + F L Y P A S VR+ ++ K W+ LC R
Sbjct: 145 DKEGRVITAEFPDFFLVTAYVPNA-SRGLVRLDYR--------KTWDVDFRAYLCGLDAR 195
Query: 70 RIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 121
+ V+ GDLN+A ID R +AG F E R F + L+E+G F D FR +
Sbjct: 196 KPLVLCGDLNVAHQEIDLKNPKGNRKNAG--FTPEE-REGF-TQLLEAG--FTDSFRELY 249
Query: 122 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156
P++ AYT W A N G R+D+ + + L
Sbjct: 250 PDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 284
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTPY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLLS 288
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTPY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLLS 288
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTPY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLLS 288
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 50/207 (24%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTPY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186
AYT W A N G R+D+ L SH+ +T L D K
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLL------------SHSLLTA-------LCDSK---- 299
Query: 187 GNAPRWKGGMSTRLEGSDHAPVYMCLG 213
+ ++ GSDH P+ + L
Sbjct: 300 ---------IRSKALGSDHCPITLYLA 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 73
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 74 VGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 126
GDLN+A ID + +AG F E R F +L D FR +P
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGELL--QAVPLADSFRHLYPNTPY 262
Query: 127 AYTCWPSNTGAEQFNYGTRIDHILCA 152
AYT W A N G R+D+ L +
Sbjct: 263 AYTFWTYMMNARSKNVGWRLDYFLLS 288
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
PLCK H CV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 506 PLCKMHHRRCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 548
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 354 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 413
Q L S HK+ +H + + N+ ++++ L H S+ P+
Sbjct: 456 AQSKLFSSAHKKFKPAHTSATELK----SYNSGLSNSELQTNRTRGHHSKSDGSPL---- 507
Query: 414 CSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHK 470
C +H V V E KG++F EW + S P C+ H
Sbjct: 508 CKMHHRRCVLRVV--RKDGENKGRQFYACSLPRGAQCGFFEW------ADLSFPFCR-HG 558
Query: 471 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+ + + V K GP G+ FFVC + + C +F+WA
Sbjct: 559 KRSIMKTVLKIGPNNGKNFFVCPLEK------KKQCNFFQWA 594
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 458 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
L+ P C H PC RVV+K G GR F+ C A EA CG+F+WA
Sbjct: 500 LLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFFEWA 548
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 433 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 488
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 525 ENKGRHFYACPLAREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 576
Query: 489 FFVCARAEGPASNPEANCGYFKWA 512
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 27 GHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID 85
G+ + N Y P+ +S D ++ K QF+ LQ E L + + ++GD+NI+P +D
Sbjct: 101 GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160
Query: 86 RCDAGPDFAKNEFRIWFRSMLVES--------GGSFFDVFRSKHPERREAYTCWPSNTGA 137
G + K R S L E D FR +P+ + ++ + +
Sbjct: 161 -IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKG 219
Query: 138 EQFNYGTRIDHILCAGPC 155
N G RID +L + P
Sbjct: 220 FDDNRGLRIDLLLASQPL 237
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR + + F + VY P A D ++ + Q + + L + + +
Sbjct: 108 MDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEKPVLAT 165
Query: 75 GDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N+A ID + P F E R F ++L F D FR H + E YT
Sbjct: 166 GDYNVAHNEIDLANPASNRRSPGFTDEE-RAGFTNLL---ATGFTDTFRHVHGDVPERYT 221
Query: 130 CWPSNTGAEQF-NYGTRIDHILCA 152
W + + N G RID+ L +
Sbjct: 222 WWAQRSKTSKINNTGWRIDYWLTS 245
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 15 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74
+D EGR + + F + VY P A D ++ + Q + + L + + +
Sbjct: 108 MDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEKPVLAT 165
Query: 75 GDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 129
GD N+A ID + P F E R F ++L F D FR H + E YT
Sbjct: 166 GDYNVAHNEIDLANPASNRRSPGFTDEE-RAGFTNLL---ATGFTDTFRHVHGDVPERYT 221
Query: 130 CWPSNTGAEQF-NYGTRIDHILCA 152
W + + N G RID+ L +
Sbjct: 222 WWAQRSKTSKINNTGWRIDYWLTS 245
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 27 GHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID 85
G+ + N Y P+ +S D ++ K QF+ LQ E L + ++GD+NI+P +D
Sbjct: 101 GNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLD 160
Query: 86 ---------------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
+C P E R W S L++ G D FR +P+ + ++
Sbjct: 161 IGIGEENRKRWLRTGKCSFLP-----EEREWM-SRLLKWG--LVDTFRQANPQTMDKFSW 212
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPC 155
+ + N G RID +L + P
Sbjct: 213 FDYRSKGFVDNRGLRIDLLLASAPL 237
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 27 GHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID 85
G+ + N Y P+ +S D ++ K QF+ LQ E L + ++GD+NI+P +D
Sbjct: 101 GNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLD 160
Query: 86 ---------------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 130
+C P E R W S L++ G D FR +P+ + ++
Sbjct: 161 IGIGEENRKRWLRTGKCSFLP-----EEREWM-SRLLKWG--LVDTFRQANPQTMDKFSW 212
Query: 131 WPSNTGAEQFNYGTRIDHILCAGPC 155
+ + N G RID +L + P
Sbjct: 213 FDYRSKGFVDNRGLRIDLLLASAPL 237
>sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3
Length = 605
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
P C H C+ RVV K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVGKDGENKGRQFYACPLPR------EAQCGFFEWA 547
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 433 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 488
E KG++F L +E EW + S P C H + + V K GP G+
Sbjct: 524 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRSTMKTVLKIGPNNGKN 575
Query: 489 FFVCARAEGPASNPEANCGYFKWA 512
FFVC + E C +F+WA
Sbjct: 576 FFVCPLGK------EKQCNFFQWA 593
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 16 DSEGRCVI----TDHGHFILFNVYGPRADSE-DTVRIQFKLQFFHVLQKRWEFLLCQGRR 70
D++ R ++ T+ G + N Y P+ +S + K +F+ LQ+ E +
Sbjct: 86 DAQKRIIMADLETEFGLLTVINGYFPQGESRAHETKFPAKEKFYADLQQYLEKEHDKSNP 145
Query: 71 IFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSFFD 115
I ++GD+NI+P+ +D +C P E R W++ L + G D
Sbjct: 146 ILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLP-----EERAWYQR-LYDYGLE--D 197
Query: 116 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152
FR +P + ++ + + N G RIDHIL +
Sbjct: 198 SFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVS 234
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 460 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 511
E ++P C H +P +VKK GP GR F+ C +GP ++ C +FKW
Sbjct: 165 ENNVPSCH-HSQPAKLVMVKKEGPNKGRLFYTC---DGPKAD---RCKFFKW 209
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 471 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+P V R V+K GP GR+F CA+ E CG+F+W
Sbjct: 903 QPAVTRTVQKDGPNKGRQFHTCAKPR------EQQCGFFQWV 938
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 471 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
+P V R V+K GP GR+F CA+ E CG+F+W
Sbjct: 901 QPSVTRTVQKDGPNKGRQFHTCAKPR------EQQCGFFQWV 936
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 460 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
E+ LC G ++P V+K GP GR ++ C + + C +F+WA
Sbjct: 1029 ESETVLCTGCQQPARQNTVRKNGPNLGRLYYKCPKPD--------ECNFFQWA 1073
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 35.8 bits (81), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 473 CVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512
V +VV+K GP G++F+ C+ P ++ E C +FKWA
Sbjct: 724 AVTKVVQKEGPNKGKKFYTCSL---PYTSSE-KCNFFKWA 759
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 371 DDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 430
+ + L+V + D+ LS+EE P+ H N+ T Y +HEL D
Sbjct: 105 EQGEARPSPGLSVGPAAGDSKLSEEEPPKKKHRRNRTTFTTY--QLHELERAFEKSHYPD 162
Query: 431 ---QDEKKGKRFLDKERNNVAL----LEWRRIQQLMETSIPL 465
++E GK L + R V +WRR ++L +S+ L
Sbjct: 163 VYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKL 204
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 30/88 (34%)
Query: 452 WRRIQQLMETSI-------------PLCKGHKEPCVAR----VVKKPGPTFGRRFFVCAR 494
WRR+ ++ +++ PLCK C R VV GP G+ F+ C
Sbjct: 570 WRRLPSILTSTVNLQEPWKSGKMTPPLCK-----CGRRSKRLVVSNNGPNHGKVFYCC-- 622
Query: 495 AEGPASNPEAN---CGYFKWAFSKSKQK 519
P + N CGYFKW + K++
Sbjct: 623 ---PIGKYQENRKCCGYFKWEQTLQKER 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,271,694
Number of Sequences: 539616
Number of extensions: 8521939
Number of successful extensions: 23118
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 22628
Number of HSP's gapped (non-prelim): 477
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)