Query 010035
Match_columns 519
No_of_seqs 362 out of 1523
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 2.7E-40 5.9E-45 329.2 14.0 179 2-213 64-260 (261)
2 PRK13911 exodeoxyribonuclease 100.0 2.7E-38 5.9E-43 315.8 18.6 173 2-212 63-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 7.2E-33 1.6E-37 277.1 18.2 180 2-213 63-267 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 9.5E-31 2.1E-35 259.6 17.4 178 2-212 63-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 3.6E-28 7.9E-33 239.0 18.5 175 2-212 66-254 (255)
6 KOG1294 Apurinic/apyrimidinic 99.9 1.7E-21 3.8E-26 201.2 13.3 187 10-248 4-197 (335)
7 KOG1294 Apurinic/apyrimidinic 99.7 2.1E-17 4.6E-22 171.0 14.0 163 16-213 156-334 (335)
8 PF14529 Exo_endo_phos_2: Endo 99.5 2.8E-13 6.2E-18 118.0 9.9 98 29-156 1-99 (119)
9 PF06839 zf-GRF: GRF zinc fing 99.3 7.7E-13 1.7E-17 99.0 3.9 45 464-515 1-45 (45)
10 COG3568 ElsH Metal-dependent h 99.3 2.2E-11 4.7E-16 122.2 12.7 152 2-215 92-258 (259)
11 PRK05421 hypothetical protein; 99.2 1.9E-10 4.2E-15 115.8 16.0 140 2-215 108-262 (263)
12 PTZ00297 pantothenate kinase; 99.0 6.1E-09 1.3E-13 125.8 17.0 178 2-215 103-315 (1452)
13 PF03372 Exo_endo_phos: Endonu 99.0 1.8E-09 4E-14 102.1 8.8 77 2-85 74-173 (249)
14 KOG3873 Sphingomyelinase famil 98.9 6.3E-09 1.4E-13 107.5 11.8 169 2-216 80-294 (422)
15 TIGR03395 sphingomy sphingomye 98.9 2.4E-08 5.3E-13 102.0 14.7 130 2-155 91-245 (283)
16 PRK15251 cytolethal distending 98.7 2.3E-07 5E-12 94.1 13.5 73 3-83 119-199 (271)
17 COG3021 Uncharacterized protei 98.6 2E-07 4.3E-12 95.6 10.6 144 3-214 152-307 (309)
18 PLN03144 Carbon catabolite rep 98.3 6E-06 1.3E-10 92.3 14.1 51 29-83 419-470 (606)
19 KOG2756 Predicted Mg2+-depende 97.4 0.00025 5.5E-09 71.6 6.5 110 18-151 190-308 (349)
20 KOG1956 DNA topoisomerase III 97.3 9E-05 1.9E-09 81.8 2.2 41 463-512 718-758 (758)
21 smart00476 DNaseIc deoxyribonu 97.2 0.0018 3.9E-08 66.4 9.5 47 28-81 143-189 (276)
22 smart00128 IPPc Inositol polyp 96.4 0.017 3.7E-07 60.1 9.9 61 17-81 126-194 (310)
23 KOG0566 Inositol-1,4,5-triphos 95.2 0.091 2E-06 61.1 9.7 49 28-80 674-726 (1080)
24 COG2374 Predicted extracellula 95.1 0.028 6.2E-07 63.9 5.5 126 48-216 652-790 (798)
25 KOG4399 C2HC-type Zn-finger pr 94.5 0.019 4.1E-07 57.8 1.8 49 461-516 11-59 (325)
26 KOG2338 Transcriptional effect 93.2 0.28 6E-06 53.8 7.8 52 28-83 253-307 (495)
27 PLN03191 Type I inositol-1,4,5 93.1 0.89 1.9E-05 51.3 11.7 17 200-216 577-593 (621)
28 KOG0620 Glucose-repressible al 92.9 0.23 5E-06 52.9 6.7 17 200-216 337-353 (361)
29 COG5239 CCR4 mRNA deadenylase, 92.9 0.58 1.2E-05 49.6 9.4 57 28-84 191-258 (378)
30 COG5411 Phosphatidylinositol 5 89.4 0.69 1.5E-05 50.2 6.0 16 200-215 312-327 (460)
31 PTZ00312 inositol-1,4,5-tripho 73.5 7.3 0.00016 40.7 5.9 55 28-82 81-142 (356)
32 PF06373 CART: Cocaine and amp 56.8 3.7 8.1E-05 33.8 0.1 35 462-510 35-69 (73)
33 PF09507 CDC27: DNA polymerase 54.8 4.4 9.6E-05 43.3 0.3 15 351-365 416-430 (430)
34 PF01396 zf-C4_Topoisom: Topoi 49.6 21 0.00045 25.9 3.0 19 488-514 20-38 (39)
35 PF05325 DUF730: Protein of un 36.8 37 0.0008 29.8 3.1 45 462-512 19-65 (122)
36 PF14552 Tautomerase_2: Tautom 28.1 1.8E+02 0.0038 24.6 5.8 32 27-63 27-58 (82)
37 cd02854 Glycogen_branching_enz 24.3 77 0.0017 27.5 3.0 11 70-80 18-28 (99)
38 TIGR01766 tspaseT_teng_C trans 22.7 1.4E+02 0.0031 24.2 4.2 30 50-79 5-34 (82)
39 cd01829 SGNH_hydrolase_peri2 S 21.7 2.8E+02 0.0061 25.8 6.6 66 51-123 91-156 (200)
40 KOG2338 Transcriptional effect 20.7 1E+02 0.0023 34.4 3.8 24 191-214 469-493 (495)
41 KOG1387 Glycosyltransferase [C 20.5 75 0.0016 34.3 2.5 49 28-84 45-93 (465)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-40 Score=329.21 Aligned_cols=179 Identities=35% Similarity=0.585 Sum_probs=160.1
Q ss_pred CceEEEecCcccc----------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcE
Q 010035 2 EGLEDFSKDELLK----------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71 (519)
Q Consensus 2 ~Gvailsr~~l~~----------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~V 71 (519)
.|||||+|.++.. .|.|||+|.++++.|.|+|+|+||+.....+|+.||++|+..|+.++++++..+++|
T Consensus 64 sGVailsr~~~~~v~~g~~~~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~ 143 (261)
T COG0708 64 SGVAILSKKPPDDVRRGFPGEEEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPV 143 (261)
T ss_pred ceEEEEEccCchhhhcCCCCCccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCE
Confidence 5999999987532 257899999999999999999999998678999999999999999999999999999
Q ss_pred EEeCCCCCCCCcccccCCC--------CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCcc
Q 010035 72 FVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 143 (519)
Q Consensus 72 II~GDfN~~~~~iD~~d~~--------~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~G 143 (519)
|||||||++|.+||..++. .+|.+.| |.||+.|+. . +|+|+||.+||+.. .||||+++.++++.|.|
T Consensus 144 vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~--G~~D~~R~~~p~~~-~YTwW~YR~~~~~~n~G 218 (261)
T COG0708 144 VLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-A--GFVDTFRLFHPEPE-KYTWWDYRANAARRNRG 218 (261)
T ss_pred EEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-c--chhhhhHhhCCCCC-cccccccccchhhhcCc
Confidence 9999999999999988773 4677766 999999985 3 59999999999974 49999999998888899
Q ss_pred ceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 144 sRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
+||||||+|+.|+ .++++|.|+.+.+.|+ .+||||||+++|.
T Consensus 219 ~RID~~l~S~~L~-------------~~~~~a~I~~~~rg~e---------------~pSDHaPV~~e~~ 260 (261)
T COG0708 219 WRIDYILVSPALA-------------DRLKDAGIDREVRGWE---------------KPSDHAPVWVELD 260 (261)
T ss_pred eeEEEEEeCHHHH-------------HHHHhcCccHHHhcCC---------------CCCCcCcEEEEec
Confidence 9999999999874 4899999999877763 7899999999986
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=2.7e-38 Score=315.76 Aligned_cols=173 Identities=34% Similarity=0.547 Sum_probs=152.8
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|||||+|..+.. .|.|||+|+++++.|+|+|||+|+++. ..+|++||++|+..|.+++..+ ..+++||
T Consensus 63 ~GVAi~~k~~~~~v~~~~~~~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~~K~~~~~~~~~~l~~l-~~~~~~I 140 (250)
T PRK13911 63 SGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLSYRMSWEVEFKKFLKAL-ELKKPVI 140 (250)
T ss_pred ceEEEEEcCCchheEEcCCCCcccccCCEEEEEECCEEEEEEEecCCCC-CCcchHHHHHHHHHHHHHHHhc-ccCCCEE
Confidence 5999999986422 378999999999999999999999985 4679999999999999999986 5678999
Q ss_pred EeCCCCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~-----~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
||||||++|.+||++++ ..+|.+.| |+||+.++. . +|+|+||.+||+..+.||||+++.+++..|+|+|||
T Consensus 141 i~GD~Nva~~~~D~~~~~~~~~~~gf~~~e-r~~f~~~l~-~--gl~D~~R~~~p~~~~~yTww~~~~~~~~~n~g~RID 216 (250)
T PRK13911 141 VCGDLNVAHNEIDLENPKTNRKNAGFSDEE-RGKFSELLN-A--GFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRID 216 (250)
T ss_pred EEccccCCCChhhccChhhcCCCCCcCHHH-HHHHHHHHh-c--CCeehhhhhCCCCCCCCccCCCcCCccccCCcceEE
Confidence 99999999999999864 35788776 999999996 3 599999999999768899999999999999999999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEE
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L 212 (519)
|||+++.+. ..+.+|.|... ..+||||||+++|
T Consensus 217 yilvs~~~~-------------~~~~~~~i~~~-------------------~~~SDH~Pv~~~~ 249 (250)
T PRK13911 217 YFLCSNPLK-------------TRLKDALIYKD-------------------ILGSDHCPVGLEL 249 (250)
T ss_pred EEEEChHHh-------------hhEEEEEECCC-------------------CCCCCcccEEEEe
Confidence 999999874 37888888653 5789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=7.2e-33 Score=277.09 Aligned_cols=180 Identities=26% Similarity=0.419 Sum_probs=149.6
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEE----CCEEEEEEEeCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDH----GHFILFNVYGPRADSE-DTVRIQFKLQFFHVLQKRWEFLLCQ 67 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~----~~~vLiNVY~P~~~~~-~~eR~~fKl~F~~~L~~ri~~ll~~ 67 (519)
.|||||+|.++.. .+.+||+|.+.+ +.|.|+|+|+|++... ..+++.+|++|++.|..++..+++.
T Consensus 63 ~GvailSr~p~~~~~~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~ 142 (268)
T PRK11756 63 YGVALLSKQTPIAVRKGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSP 142 (268)
T ss_pred CEEEEEECCChHHeEECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhcc
Confidence 5999999987632 145799998887 3699999999998643 3467788999999999999888778
Q ss_pred CCcEEEeCCCCCCCCcccccCC-----------CCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCC
Q 010035 68 GRRIFVVGDLNIAPAAIDRCDA-----------GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 136 (519)
Q Consensus 68 g~~VII~GDfN~~~~~iD~~d~-----------~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ 136 (519)
+.+||||||||++|..+|.+.+ ..+|.+.| |.|++.++. . +|+|+||.+||+..+.||||+++.+
T Consensus 143 ~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~e-r~~~~~l~~-~--~l~D~~R~~~p~~~~~~T~~~~~~~ 218 (268)
T PRK11756 143 DNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWLDRLMD-W--GLVDTFRQLNPDVNDRFSWFDYRSK 218 (268)
T ss_pred CCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHH-HHHHHHHHh-C--CcEeehhhhCCCCCCcccCcCCccc
Confidence 8999999999999999998642 23566655 999998774 3 5999999999985578999999999
Q ss_pred CccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 137 AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 137 ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
+++.|+|+||||||+++.+. .+|++|.|+.+.+.+ ..+||||||+++|.
T Consensus 219 ~~~~~~g~RIDyi~~s~~~~-------------~~v~~~~i~~~~~~~---------------~~~SDH~PV~~~~~ 267 (268)
T PRK11756 219 GFDDNRGLRIDLILATQPLA-------------ERCVETGIDYDIRGM---------------EKPSDHAPIWATFK 267 (268)
T ss_pred ccccCCceEEEEEEeCHHHH-------------hhheEeEEeHHHhCC---------------CCCCCcccEEEEEe
Confidence 98889999999999999874 379999998764322 46899999999986
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.97 E-value=9.5e-31 Score=259.62 Aligned_cols=178 Identities=33% Similarity=0.582 Sum_probs=149.7
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.||+||+|..+.. .|.+||+|.+++..|+|+|+|+|+++....+|+.+|++|++.|.+++..+...+.+||
T Consensus 63 ~Gvailsr~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~pvI 142 (254)
T TIGR00195 63 SGVAIFSKEEPLSVRRGFGVEEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLEKLVDKDKPVL 142 (254)
T ss_pred ceEEEEEcCCcceEEECCCCcccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 5899999965322 2579999999999999999999997766678999999999999999998877789999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
||||||+++..+|+.++. .+|.+.+ |.+|+.++. . +|+|+||.+||. .+.||||+++.+++..|+|.|||
T Consensus 143 i~GDfN~~~~~~d~~~~~~~~~~~~~~~~e-~~~~~~l~~-~--~l~D~~r~~~~~-~~~~T~~~~~~~~~~~~~g~RID 217 (254)
T TIGR00195 143 ICGDMNIAPTEIDLHSPDENRNHTGFLPEE-REWLDRLLE-A--GLVDTFRKFNPD-EGAYSWWDYRTKARDRNRGWRID 217 (254)
T ss_pred EEeecccCCChhhccChhhcCCCcCcChHH-HHHHHHHHH-c--CCEeeecccCCC-CCCCcccCCcCCccccCCceEEE
Confidence 999999999999987542 4676655 889999884 4 499999999998 47899999988888889999999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEE
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L 212 (519)
|||+++.+. .+|.+|.|....+.+ ..+|||+||+++|
T Consensus 218 ~i~~s~~~~-------------~~v~~~~i~~~~~~~---------------~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 218 YFLVSEPLK-------------ERCVDCGIDYDIRGS---------------EKPSDHCPVVLEF 254 (254)
T ss_pred EEEECHHHH-------------hhhhEEEEcHHHhcC---------------CCCCCcccEEEeC
Confidence 999999874 378999997742211 4789999999975
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.6e-28 Score=239.03 Aligned_cols=175 Identities=35% Similarity=0.592 Sum_probs=144.5
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|++||+|.++.. .|.+||+|.++++.|+|+|||+|+++....++..+|+.|++.|...+.+++..+.++|
T Consensus 66 ~G~ailsr~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~I 145 (255)
T TIGR00633 66 SGVAILSKVEPLDVRYGFGGEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEKELDAGKPVI 145 (255)
T ss_pred ceEEEEEcCCcceEEECCCCCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 5899999987532 3679999999999999999999998855677889999999999888776666788999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
|+||||+++..+|+.+.. .++...+ +.+|+.++. . +|+|+||.+||...+.||||+.+...+..+.|.|||
T Consensus 146 l~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID 221 (255)
T TIGR00633 146 ICGDMNVAHTEIDLGNPKENKGNAGFTPEE-REWFDELLE-A--GLVDTFRHFNPDTEGAYTWWDYRSGARDRNRGWRID 221 (255)
T ss_pred EEeecccCCChHHccChhhcCCCCCcCHHH-HHHHHHHHH-c--CCEecchhhCCCCCCcCcCcCCccCccccCCceEEE
Confidence 999999999988876542 2344433 788999885 4 599999999998656899999887777778999999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEE
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 212 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L 212 (519)
|||+++.+. .++.++.|... ..+|||+||+++|
T Consensus 222 ~i~~s~~~~-------------~~~~~~~i~~~-------------------~~~SDH~pv~~~~ 254 (255)
T TIGR00633 222 YFLVSEPLA-------------ERVVDSYIDSE-------------------IRGSDHCPIVLEL 254 (255)
T ss_pred EEEECHHHH-------------hhhcEeEECCC-------------------CCCCCcccEEEEE
Confidence 999998763 36788888753 3579999999998
No 6
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.86 E-value=1.7e-21 Score=201.23 Aligned_cols=187 Identities=31% Similarity=0.409 Sum_probs=133.1
Q ss_pred CccccccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCC
Q 010035 10 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 89 (519)
Q Consensus 10 ~~l~~lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~ 89 (519)
++...+|.||||+++++..+++++||||....+..+| |+.|+..|+.+++.++.+|+++|+ |+++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~ 76 (335)
T KOG1294|consen 4 KEALELDSEGRCVIVDKEMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEA 76 (335)
T ss_pred hhhhhhhccCCeeeeecccccccceeccccCCcchhh---hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhh
Confidence 3455679999999999999999999999998755555 899999999999999999999999 998888776553
Q ss_pred CCCCCchH-HHHHHHHHH--HHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCcccccccccccc
Q 010035 90 GPDFAKNE-FRIWFRSML--VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 166 (519)
Q Consensus 90 ~~~f~~~e-~R~~l~~lL--~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~ 166 (519)
...|.... ...++..++ .+.. ..+|..+..||+ .+.||+|.........+|+.+|||+.+.+.+++
T Consensus 77 ~~~~~~~~~~~~~l~d~~~~~~t~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~--------- 145 (335)
T KOG1294|consen 77 CEKFSGDPEISSELRDLQCLLETK-CTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH--------- 145 (335)
T ss_pred hhccccchhccccchhhhhhhhcc-ceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee---------
Confidence 32222110 111222211 1121 349999999999 588999998888888999999999999765421
Q ss_pred ccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEeccCCCCCCCCCcccccccch----hhhhHHHHH
Q 010035 167 FVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI----IRGVQQTLV 242 (519)
Q Consensus 167 ~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~~~~~~~~~p~l~~~~lpe----f~g~q~~i~ 242 (519)
|.. +.++|||+||...+... .....|++.|+|. +...+-.|.
T Consensus 146 -------------------------~~~----~~~~s~h~~~g~~i~~e-----~e~~~l~~~y~p~~~~~~~~~~~~~~ 191 (335)
T KOG1294|consen 146 -------------------------YGF----GAMGSDHRPVGRVIIAE-----FEIFILINTYVPNIGGGLVNLVYRIL 191 (335)
T ss_pred -------------------------ecc----cccCCccCccceEEEEe-----ecceeeccccCcccccccchhhhhhh
Confidence 110 12699999998877543 3445666666654 444444444
Q ss_pred HHHhhc
Q 010035 243 SVLMKR 248 (519)
Q Consensus 243 ~ff~~~ 248 (519)
.++.+.
T Consensus 192 ~~~~~~ 197 (335)
T KOG1294|consen 192 DRWDKE 197 (335)
T ss_pred hhhHHH
Confidence 555555
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.73 E-value=2.1e-17 Score=171.01 Aligned_cols=163 Identities=26% Similarity=0.429 Sum_probs=129.2
Q ss_pred cCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHH--HHHHHHHHHHHHHHHh---cCCcEEEeCCCCCCCCcccc---c
Q 010035 16 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK--LQFFHVLQKRWEFLLC---QGRRIFVVGDLNIAPAAIDR---C 87 (519)
Q Consensus 16 D~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fK--l~F~~~L~~ri~~ll~---~g~~VII~GDfN~~~~~iD~---~ 87 (519)
+.+||+|++++..+.|+|.|+|+.... ..+..|+ .++-..++..+..+-. ...+++++||+|+.|..||. +
T Consensus 156 ~~~g~~i~~e~e~~~l~~~y~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~ 234 (335)
T KOG1294|consen 156 RPVGRVIIAEFEIFILINTYVPNIGGG-LVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPL 234 (335)
T ss_pred CccceEEEEeecceeeccccCcccccc-cchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccc
Confidence 579999999999999999999998863 5566665 3444445555544311 12479999999999999994 2
Q ss_pred -C------CCCCCCchHHHHHH-HHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCccccc
Q 010035 88 -D------AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 159 (519)
Q Consensus 88 -d------~~~~f~~~e~R~~l-~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~ 159 (519)
. ..++|.+.+ |.|+ ..++. . +.++|+||+.||+....||+|.+..+.+..|.|+|+|||+|++..+
T Consensus 235 ~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~-~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~--- 308 (335)
T KOG1294|consen 235 VSPAGNTLSNAGFTPEE-RDSFFAELLE-K-GPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGP--- 308 (335)
T ss_pred cccccCCcCCCCCCHHH-hhhHHHhhcc-C-CcceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCC---
Confidence 1 125777766 9999 56663 3 4699999999999877899999999999999999999999998864
Q ss_pred cccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 160 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 160 ~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
..+.++.|...+ +.+||||||++.|.
T Consensus 309 ----------n~~r~~~Ic~r~------------------~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 309 ----------NNGRRFYICSRP------------------IHGSDHCPITLEFF 334 (335)
T ss_pred ----------CCCceeeeecCc------------------cCCCCCCCeeeeec
Confidence 478899997741 68999999999874
No 8
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.46 E-value=2.8e-13 Score=117.96 Aligned_cols=98 Identities=24% Similarity=0.348 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCch-HHHHHHHHHHH
Q 010035 29 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-EFRIWFRSMLV 107 (519)
Q Consensus 29 ~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~-e~R~~l~~lL~ 107 (519)
++|+|||+|... .+..|+..|...+.... ..++||+||||+.+..++... .. ...+.|..++.
T Consensus 1 i~i~~vY~pp~~--------~~~~~~~~l~~~~~~~~--~~~~Ii~GDFN~~~~~w~~~~------~~~~~~~~l~~~~~ 64 (119)
T PF14529_consen 1 ITIISVYAPPSS--------EREEFFDQLRQLLKNLP--PAPIIIGGDFNAHHPNWDSSN------TNSRRGEQLLDWLD 64 (119)
T ss_dssp EEEEEEE--TTS---------CHHHHHHHHHHHHCCT--TSSEEEEEE-----GGGT-SC------HHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCc--------cHHHHHHHHHHHHHhCC--CCCEEEEeECCCCchhhhhcc------ccchhHHHHHHHhh
Confidence 589999999976 23467888887776531 229999999999665554311 11 22445666666
Q ss_pred HcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCcc
Q 010035 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 156 (519)
Q Consensus 108 ~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll 156 (519)
+. +|+++ ++.. ..|||++... ++|||+||++..++
T Consensus 65 ~~--~l~~~----~~~~-~~~T~~~~~~-------~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 65 SH--NLVDL----NPPG-RPPTFISNSH-------GSRIDLILTSDNLL 99 (119)
T ss_dssp HC--TEEE-------TT----SEEECCC-------EE--EEEEEECCGC
T ss_pred hc--eeeee----ecCC-CCCcccCCCC-------CceEEEEEECChHH
Confidence 55 48887 3322 3499987543 59999999999874
No 9
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.34 E-value=7.7e-13 Score=99.00 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=40.6
Q ss_pred CcCCCCCCCcccccccCCCCCCCcceeecCCCCCCCCCCCCCCCceeecCCC
Q 010035 464 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 515 (519)
Q Consensus 464 P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~~~~ 515 (519)
|+|. ||++|++++++|.|+|.||.||.|++..+ .+|+||+|.|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 58999999999999999999999998743 789999999973
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=122.18 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=91.8
Q ss_pred CceEEEecCcccc-----ccC----CCCE-EEEEE-----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 010035 2 EGLEDFSKDELLK-----IDS----EGRC-VITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66 (519)
Q Consensus 2 ~Gvailsr~~l~~-----lD~----EGR~-Ii~~~-----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~ 66 (519)
.|+++||+.++.. ++. |.|- +.+++ +.|.|+|+|.--.. .+ |++.++.|...+ . +.
T Consensus 92 ~GnaiLS~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~---~~----R~~Q~~~L~~~~-~-l~ 162 (259)
T COG3568 92 HGNAILSRLPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLGLSE---ES----RLRQAAALLALA-G-LP 162 (259)
T ss_pred eeeEEEecCcccchhhccCCCCCCCCCceeEEEEEEcCCCCEEEEEEEeccccH---HH----HHHHHHHHHhhc-c-Cc
Confidence 5999999776432 332 7784 33333 37999999985221 22 334444444411 2 23
Q ss_pred cCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCcccee
Q 010035 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146 (519)
Q Consensus 67 ~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRI 146 (519)
...++|+|||||..++.-+..-. .+..+. ....+.+++.-.++-. .-||-+...- .||
T Consensus 163 ~~~p~vl~GDFN~~p~s~~yr~~------------~~~~~~-~~~~~~~~~~~a~~~~--~~tfps~~p~-------lri 220 (259)
T COG3568 163 ALNPTVLMGDFNNEPGSAEYRLA------------ARSPLN-AQAALTGAFAPAVGRT--IRTFPSNTPL-------LRL 220 (259)
T ss_pred ccCceEEEccCCCCCCCccceec------------cCCchh-hccccccccCcccCcc--cCCCCCCCcc-------ccc
Confidence 44599999999998876543211 111121 1124666666655532 1244332221 499
Q ss_pred eEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEecc
Q 010035 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215 (519)
Q Consensus 147 DyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 215 (519)
||||+++.+ .|..+.+..+.. | ...|||.||.++|.+.
T Consensus 221 D~Ifvs~~~---------------~i~~~~v~~~~~-a---------------~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 221 DRIFVSKEL---------------AIRSVHVLTDRL-A---------------RVASDHLPLLAELRLK 258 (259)
T ss_pred cEEEecCcc---------------cEEEEEeecCCC-c---------------cccccccceEEEEecC
Confidence 999999976 677888877521 2 5799999999999763
No 11
>PRK05421 hypothetical protein; Provisional
Probab=99.24 E-value=1.9e-10 Score=115.82 Aligned_cols=140 Identities=15% Similarity=0.237 Sum_probs=84.2
Q ss_pred CceEEEecCccccc-----c----CCCCE-EEEEE----C-CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 010035 2 EGLEDFSKDELLKI-----D----SEGRC-VITDH----G-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 66 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----D----~EGR~-Ii~~~----~-~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~ 66 (519)
.|++||||.++... + .++|. +++++ + .|.|+|+|.++....... +...++.|...+..
T Consensus 108 ~GvaiLSR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~----r~~q~~~l~~~~~~--- 180 (263)
T PRK05421 108 SGVMTLSKAHPVYCCPLREREPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGVDV----YSKQLEPIGDQIAH--- 180 (263)
T ss_pred cceeEeeecccceeeccCCCCccccCcceeEEEEEEeCCCCEEEEEEECccccCcChHH----HHHHHHHHHHHHHh---
Confidence 49999999986432 1 13454 44443 2 499999999765322122 23344555555543
Q ss_pred cCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCcccee
Q 010035 67 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146 (519)
Q Consensus 67 ~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRI 146 (519)
...++||+||||..... . ..+|+.++... ++.|++ .|.... + ..++.||
T Consensus 181 ~~~p~Il~GDFN~~~~~-----------~---~~~l~~~~~~~--~l~~~~---~~~~~~-~-----------~~~~~~I 229 (263)
T PRK05421 181 HSGPVILAGDFNTWSRK-----------R---MNALKRFAREL--GLKEVR---FTDDQR-R-----------RAFGRPL 229 (263)
T ss_pred CCCCEEEEcccccCccc-----------c---hHHHHHHHHHc--CCCccC---cCCccc-c-----------cccCCCc
Confidence 35689999999974321 0 23456666443 354532 111100 0 1125799
Q ss_pred eEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEecc
Q 010035 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215 (519)
Q Consensus 147 DyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 215 (519)
||||++ .+ .+.++.+.. ..+|||+||+++|.+.
T Consensus 230 D~I~~~-~~---------------~v~~~~v~~--------------------~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 230 DFVFYR-GL---------------NVSKASVLV--------------------TRASDHNPLLVEFSLK 262 (263)
T ss_pred ceEEEC-Cc---------------EEEEEEcCC--------------------CCCCCccCEEEEEEec
Confidence 999985 33 577777764 4799999999999753
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=99.00 E-value=6.1e-09 Score=125.83 Aligned_cols=178 Identities=18% Similarity=0.155 Sum_probs=94.7
Q ss_pred CceEEEecCccccc-----cC-------CCCE-E--EEEE-------CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----DS-------EGRC-V--ITDH-------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQK 59 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----D~-------EGR~-I--i~~~-------~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ 59 (519)
.|+|||||.++... .. +-|- | .+++ +.+.|+|+|.-.... +..|. +..++|.+
T Consensus 103 ~G~AILSR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~-~~~R~----~Q~~ql~~ 177 (1452)
T PTZ00297 103 NGLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDS-LPSTS----SQVQETRR 177 (1452)
T ss_pred CEEEEEECCChhhceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCC-cchHH----HHHHHHHH
Confidence 59999999997542 11 2342 2 3333 259999998865433 12343 34445555
Q ss_pred HHHHHH---------hcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccC---CCCCCC
Q 010035 60 RWEFLL---------CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH---PERREA 127 (519)
Q Consensus 60 ri~~ll---------~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~h---P~~~~~ 127 (519)
+++..+ ..+.+|||+||||+.. +|..+... ...+....++.+. ..+.+|.|+|+..+ |.....
T Consensus 178 ~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~~~~--~s~e~~~ml~~l~-~~~~~l~dv~~~~~~~~~~T~p~ 252 (1452)
T PTZ00297 178 FVESVIANVYEQNNDGAEIPFVIAGDFNING--IDPHNGGH--PTKRFQELLNELQ-DLGSGVREVIYDETGQHPPTRPP 252 (1452)
T ss_pred HHHHhhhhhcccccCCCCCCEEEEeeCCCcc--ccccccCC--ccHHHHHHHHHhh-hccccHhHHhHhhcCCCCCCCCc
Confidence 554311 2456899999999842 22211000 0112233333333 22334556554433 222123
Q ss_pred CCcCCCCC-CCccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCcc
Q 010035 128 YTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 206 (519)
Q Consensus 128 yT~ws~~~-~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~ 206 (519)
.+||.... -.+......||||||+++.+ .|.++.|...... .-..| .+.|||+
T Consensus 253 ~~~fP~~~p~~~~~~~~~riD~Ifv~~~v---------------~v~~~~v~~~~~~----~~~~~-------~~~SDH~ 306 (1452)
T PTZ00297 253 ILFFPEQSKLERYSSTPQRQDYFFVTPCV---------------QVEKPRIEKFVVS----SRRPY-------TYLSDHF 306 (1452)
T ss_pred cccccccCccccccCCCcceeEEEEeCCc---------------eEEEEEEeccccc----CCCCC-------CCcCcCc
Confidence 45555331 11111233599999999765 5777777542100 00112 5899999
Q ss_pred ceEEEEecc
Q 010035 207 PVYMCLGEV 215 (519)
Q Consensus 207 PV~~~L~~~ 215 (519)
||+++|.+.
T Consensus 307 Pv~a~l~l~ 315 (1452)
T PTZ00297 307 GVSARLTLP 315 (1452)
T ss_pred cEEEEEEeC
Confidence 999999873
No 13
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.97 E-value=1.8e-09 Score=102.07 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=43.1
Q ss_pred CceEEEecCccccc--------cCCCCEEEE----E---------ECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI--------DSEGRCVIT----D---------HGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 60 (519)
Q Consensus 2 ~Gvailsr~~l~~l--------D~EGR~Ii~----~---------~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~r 60 (519)
.|++||+|.++... +.++..+.. . ...|+|+|+|.|... ..|. .....|...
T Consensus 74 ~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~~~---~~~~----~~~~~~~~~ 146 (249)
T PF03372_consen 74 YGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPSSN---DERQ----EQWRELLAR 146 (249)
T ss_dssp EEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTSHH---HHHH----HHHHHHHHH
T ss_pred ceEEEEEccccccccccccccccccccccccccccccccccccccceEEEeeeccccccc---hhhh----hhhhhhhhh
Confidence 37999999975431 234443211 1 125789999988732 1222 223344444
Q ss_pred HHHHHhcCC--cEEEeCCCCCCCCccc
Q 010035 61 WEFLLCQGR--RIFVVGDLNIAPAAID 85 (519)
Q Consensus 61 i~~ll~~g~--~VII~GDfN~~~~~iD 85 (519)
+..+..... ++|||||||..+...+
T Consensus 147 ~~~~~~~~~~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 147 IQKIYADNPNEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHHHHHTSSCCEEEEEEE-SS-BSSGG
T ss_pred hhhcccccccceEEEEeecccCCccch
Confidence 444433333 6999999999877543
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=98.93 E-value=6.3e-09 Score=107.53 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=100.8
Q ss_pred CceEEEecCccccc-----cCCCCE-------------E---EEEECCEEEEEEE-----eCCCCCCChhhHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----DSEGRC-------------V---ITDHGHFILFNVY-----GPRADSEDTVRIQFKLQFFH 55 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----D~EGR~-------------I---i~~~~~~vLiNVY-----~P~~~~~~~eR~~fKl~F~~ 55 (519)
.|+++|||.++... --.||. | .+.++. .+||+| +|.+.+. ++=+.+|....-
T Consensus 80 aGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g-~~v~~yntHLHAeY~rq~-D~YL~HR~~QAw 157 (422)
T KOG3873|consen 80 AGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGG-RMVNLYNTHLHAEYDRQN-DEYLCHRVAQAW 157 (422)
T ss_pred CceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCC-EEeeeeehhccccccccC-chhhhHHHHHHH
Confidence 49999999996542 223332 2 223343 445554 4444432 344556666666
Q ss_pred HHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCC---------
Q 010035 56 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE--------- 126 (519)
Q Consensus 56 ~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~--------- 126 (519)
.|...|+...+.+.-||++||||.-|.++-++ +|.. .+|+|+|+..|++...
T Consensus 158 dlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~-----------------ll~~--a~l~daw~~~h~~q~e~~~~r~s~~ 218 (422)
T KOG3873|consen 158 DLAQFIRATRQNADVVILAGDLNMQPQDLGHK-----------------LLLS--AGLVDAWTSLHLDQCESDSFRLSED 218 (422)
T ss_pred HHHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------eeec--cchhhhHhhhchhhhcCcccccchh
Confidence 67788887777888899999999987765331 2222 2478888888875311
Q ss_pred -----CCCcCCCCC-----CCc-cCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCC
Q 010035 127 -----AYTCWPSNT-----GAE-QFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 195 (519)
Q Consensus 127 -----~yT~ws~~~-----~ar-~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~ 195 (519)
.-||-+... ..+ ..-.|.||||+|+.+.-. .....++++... | +
T Consensus 219 ~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~------------~~~~a~~~~t~~-r------v------ 273 (422)
T KOG3873|consen 219 KELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDC------------NAKIAEVEFTEP-R------V------ 273 (422)
T ss_pred hhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcce------------EEEeeeEEecCC-C------C------
Confidence 114533111 111 123589999999998642 113344444331 1 1
Q ss_pred CCCCCCCCCccceEEEEeccC
Q 010035 196 MSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 196 ~~~~~~gSDH~PV~~~L~~~~ 216 (519)
+-.+...|||..++++|.+..
T Consensus 274 P~~d~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 274 PGEDCSYSDHEALMATLKIFK 294 (422)
T ss_pred CCCCCCccchhhheeEEEeec
Confidence 112467899999999998775
No 15
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.90 E-value=2.4e-08 Score=102.02 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=73.6
Q ss_pred CceEEEecCcccccc------C------CCC-EEEEEE----CCEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKID------S------EGR-CVITDH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWE 62 (519)
Q Consensus 2 ~Gvailsr~~l~~lD------~------EGR-~Ii~~~----~~~vLiNVY~P~~~~~~--~eR~~fKl~F~~~L~~ri~ 62 (519)
.|++||||.++.... . +.| ++.++. ..|.|+|+|.-...... ......|...++.|.+++.
T Consensus 91 ~G~~iLSr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~ 170 (283)
T TIGR03395 91 GGVAIVSKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFID 170 (283)
T ss_pred CEEEEEECCCccccEEEEccCCCCCccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHh
Confidence 599999999864321 1 123 344444 25899999986543210 1112446677778887775
Q ss_pred HH-HhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCc---
Q 010035 63 FL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE--- 138 (519)
Q Consensus 63 ~l-l~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar--- 138 (519)
.. +..+.+|||+||||+.+.. .+ +..|+...+ ..|.. +.. -.||| ....+..
T Consensus 171 ~~~~~~~~pvIl~GDfN~~~~s------------~~----~~~ml~~l~--~~~p~---~~g--~~~T~-d~~~N~~a~~ 226 (283)
T TIGR03395 171 SKNIPKDETVLIGGDLNVNKGS------------NE----YHDMFKTLN--VSEPR---YVG--VPATW-DATTNSIAKY 226 (283)
T ss_pred hccCCCCceEEEEeeCCCCCCC------------HH----HHHHHHHhc--ccCCC---cCC--CCCCc-CCCcCchhhh
Confidence 42 2346789999999997643 12 233443322 22221 111 24786 3322221
Q ss_pred --cCCccceeeEEEEcCCc
Q 010035 139 --QFNYGTRIDHILCAGPC 155 (519)
Q Consensus 139 --~~N~GsRIDyILvS~~l 155 (519)
......||||||++..-
T Consensus 227 ~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 227 YYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred hcCCCCcceEEEEEEECCC
Confidence 22345699999999764
No 16
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=98.69 E-value=2.3e-07 Score=94.06 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred ceEEEecCcccc---c---cCCCC-EEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHH-HHHhcCCcEEEe
Q 010035 3 GLEDFSKDELLK---I---DSEGR-CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQGRRIFVV 74 (519)
Q Consensus 3 Gvailsr~~l~~---l---D~EGR-~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~-~ll~~g~~VII~ 74 (519)
|+|||||.+... + -.+-| +|.++++.++++++|+.+.+. .++ ....+.+.++.. .. ...++||+
T Consensus 119 glAIlSr~~a~~~~~l~~p~~~~Rpilgi~i~~~~ffstH~~a~~~--~da----~aiV~~I~~~f~~~~--~~~pw~I~ 190 (271)
T PRK15251 119 NLAIVSRRRADEVIVLRPPTVASRPIIGIRIGNDVFFSIHALANGG--TDA----GAIVRAVHNFFRPNM--RHINWMIA 190 (271)
T ss_pred eEEEEecccccceEEecCCCCcccceEEEEecCeEEEEeeecCCCC--ccH----HHHHHHHHHHHhhcc--CCCCEEEe
Confidence 899999998533 2 13444 667889999999999998853 223 345666666654 21 23689999
Q ss_pred CCCCCCCCc
Q 010035 75 GDLNIAPAA 83 (519)
Q Consensus 75 GDfN~~~~~ 83 (519)
||||-.|+.
T Consensus 191 GDFNr~P~s 199 (271)
T PRK15251 191 GDFNRSPDR 199 (271)
T ss_pred ccCCCCCcc
Confidence 999988765
No 17
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=2e-07 Score=95.63 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=79.1
Q ss_pred ceEEEecCc--ccc------ccCCCCEEEEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 010035 3 GLEDFSKDE--LLK------IDSEGRCVITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 70 (519)
Q Consensus 3 Gvailsr~~--l~~------lD~EGR~Ii~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~ 70 (519)
|++++++.. +.. -...++.+..-. ..++|++++.-+..- ....|| ..+..|.+.+.. -..+
T Consensus 152 ~~a~~sr~~~~~~~~~e~~~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~---~~~~~~-~ql~~l~~~i~~---~~gp 224 (309)
T COG3021 152 TLAILSRRPCCPLTEAEPWLRLPKSALATAYPLPDGTELTVVALHAVNFPV---GTDPQR-AQLLELGDQIAG---HSGP 224 (309)
T ss_pred eeeeccccccccccccCccccCCccceeEEEEcCCCCEEEEEeeccccccC---CccHHH-HHHHHHHHHHHc---CCCC
Confidence 456777664 211 134555443322 368888887764321 223444 444455555544 3589
Q ss_pred EEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEE
Q 010035 71 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 150 (519)
Q Consensus 71 VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyIL 150 (519)
||+.||||..|..- .-+.++.+. | .+.+...- ...|-+|+.. +..-.|.+|||||
T Consensus 225 vIlaGDfNa~pWS~-------------~~~R~~~l~---~---~~~~~~aG---~~~~~~~p~~---~~r~~g~PIDhvf 279 (309)
T COG3021 225 VILAGDFNAPPWSR-------------TAKRMAALG---G---LRAAPRAG---LWEVRFTPDE---RRRAFGLPIDHVF 279 (309)
T ss_pred eEEeecCCCcchhH-------------HHHHHHHhc---c---cccchhcc---CCccccCHHH---HhhccCCCcceee
Confidence 99999999976530 002233331 1 12222111 1223333321 1124678999999
Q ss_pred EcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEec
Q 010035 151 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214 (519)
Q Consensus 151 vS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 214 (519)
..+ + .+.++..+. ..||||.||+++|..
T Consensus 280 ~rg-l---------------~~~ka~rl~--------------------~~gSDH~PLLveF~~ 307 (309)
T COG3021 280 YRG-L---------------TVMKARRLP--------------------DRGSDHRPLLVEFSY 307 (309)
T ss_pred ecC-c---------------chhhhhhcc--------------------ccCCCCCceEEEEEe
Confidence 988 3 344444444 389999999999975
No 18
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.33 E-value=6e-06 Score=92.32 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh-cCCcEEEeCCCCCCCCc
Q 010035 29 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAA 83 (519)
Q Consensus 29 ~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~-~g~~VII~GDfN~~~~~ 83 (519)
|.|+|+|.- .+ ++....|+.....|...++.+.. .+.+|||+||||..|+.
T Consensus 419 l~VaNTHL~-~~---p~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 419 LCVANTHIH-AN---QELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred EEEEEeeec-cC---CccchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 889999983 22 22334556666667777766532 36799999999998874
No 19
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=97.44 E-value=0.00025 Score=71.58 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCEE-EEEE----CCEEEEEEEeCCCCCCChhhHH-HHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCC
Q 010035 18 EGRCV-ITDH----GHFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP 91 (519)
Q Consensus 18 EGR~I-i~~~----~~~vLiNVY~P~~~~~~~eR~~-fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~ 91 (519)
=||-+ |++. ..++|.+.|.-......++|.. |+ .-++..++.|+.+ .+..||.+||+|-.....-+|.
T Consensus 190 M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~-~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev~r~~--- 263 (349)
T KOG2756|consen 190 MMRNLLIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFK-MVLKKMQEAIESL--PNATVIFGGDTNLRDREVTRCG--- 263 (349)
T ss_pred hhheeEEEEEeecCceEEEEeccccCCCCCChHHHHHHH-HHHHHHHHHHHhC--CCceEEEcCcccchhhhcccCC---
Confidence 45543 4443 2588888887666555677765 33 3355666666654 7889999999998533211111
Q ss_pred CCCchHHHHHHHHHHHHcCCCeEeeecccC-CCCCCCCCcCCCCCCCccCCcc--ceeeEEEE
Q 010035 92 DFAKNEFRIWFRSMLVESGGSFFDVFRSKH-PERREAYTCWPSNTGAEQFNYG--TRIDHILC 151 (519)
Q Consensus 92 ~f~~~e~R~~l~~lL~~~g~~LvD~~R~~h-P~~~~~yT~ws~~~~ar~~N~G--sRIDyILv 151 (519)
.+ .+++|+|-.+- |.. -.|||-......-.++.| .|+|.||+
T Consensus 264 --lP---------------D~~vDvWE~lg~p~~-~~FTwDT~~N~nl~G~~a~k~RfDRi~~ 308 (349)
T KOG2756|consen 264 --LP---------------DNIVDVWEFLGKPKH-CQFTWDTQMNSNLGGTAACKLRFDRIFF 308 (349)
T ss_pred --CC---------------chHHHHHHHhCCCCc-CceeeecccCcccchhHHHHHHHHHHhh
Confidence 01 24889998887 654 569985555443333333 59999999
No 20
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.34 E-value=9e-05 Score=81.80 Aligned_cols=41 Identities=29% Similarity=0.706 Sum_probs=34.4
Q ss_pred CCcCCCCCCCcccccccCCCCCCCcceeecCCCCCCCCCCCCCCCceeec
Q 010035 463 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 512 (519)
Q Consensus 463 ~P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~ 512 (519)
-..|.| +..++.+.|.|.|+|.||.||.|..+ ..|+||.|+
T Consensus 718 ~~~c~c-~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 718 EVTCGC-GTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred ccccCC-cchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 356887 67788888889999999999999754 459999996
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.18 E-value=0.0018 Score=66.40 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=28.8
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAP 81 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~ 81 (519)
.|+|||+|.-..+ +...-...++.+....++. ...+||||||||+..
T Consensus 143 ~F~li~~H~~p~~-----~~~e~~aL~~v~~~~~~~~--~~~~villGDFNa~~ 189 (276)
T smart00476 143 EFVIVPLHTTPEA-----AVAEIDALYDVYLDVRQKW--GTEDVIFMGDFNAGC 189 (276)
T ss_pred cEEEEEecCChHH-----HHHHHHHHHHHHHHHHHhh--ccCCEEEEccCCCCC
Confidence 6999999985432 2221112244344444432 468999999999954
No 22
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=96.43 E-value=0.017 Score=60.05 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=38.0
Q ss_pred CCCCEEEEEECC--EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHH----H--HhcCCcEEEeCCCCCCC
Q 010035 17 SEGRCVITDHGH--FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----L--LCQGRRIFVVGDLNIAP 81 (519)
Q Consensus 17 ~EGR~Ii~~~~~--~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~----l--l~~g~~VII~GDfN~~~ 81 (519)
..|.++-+.+.. |.+||+|.+++... .+.|..-|..+...+.- . +....+||++||||---
T Consensus 126 KG~v~i~~~~~~~~~~fv~~HL~a~~~~----~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi 194 (310)
T smart00128 126 KGAVAVRFKLSDTSFCFVNSHLAAGASN----VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRL 194 (310)
T ss_pred CceEEEEEEEcCcEEEEEeeccccccch----hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceee
Confidence 455556666654 99999999997642 23344455555433311 0 12357899999999743
No 23
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.091 Score=61.07 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=27.6
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHH----HHhcCCcEEEeCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----LLCQGRRIFVVGDLNIA 80 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~----ll~~g~~VII~GDfN~~ 80 (519)
.|-+|+-|.-++-..-.||-. =|..|...|.- .+.....|+||||||--
T Consensus 674 sfCFv~SHlAAG~snv~ERn~----DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 674 SFCFVCSHLAAGQSNVEERNE----DYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred cEEEEecccccccchHhhhhh----hHHHHHHhccccCCccccCCceEEEeccccee
Confidence 577777777665543344432 23333333321 12345678999999963
No 24
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=95.14 E-value=0.028 Score=63.88 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHH--hcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCC
Q 010035 48 QFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 125 (519)
Q Consensus 48 ~fKl~F~~~L~~ri~~ll--~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~ 125 (519)
..|.+...+|..+++.+. ....+++|+||||.-..+ ++ ++ .|... ++...--.+|+..
T Consensus 652 ~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e------------dp----I~-~l~~a--Gy~~l~~~~~~~~- 711 (798)
T COG2374 652 QTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE------------DP----IQ-ALEGA--GYMNLAARFHDAG- 711 (798)
T ss_pred hHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc------------cH----HH-HHhhc--CchhhhhhccCCC-
Confidence 345566777877777532 346799999999985432 11 22 23222 3444444455443
Q ss_pred CCCCcCCCCCCCccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCC-----------CCCCCCC
Q 010035 126 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG-----------NAPRWKG 194 (519)
Q Consensus 126 ~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~-----------~~~~w~~ 194 (519)
..|++. .+. +. --|||||++.++.+ +|..+.++.-. .-+|+ ++...+.
T Consensus 712 ~~YSY~---f~G---~~-gtLDhaLas~sl~~-------------~v~~a~ewHIN-AdE~~~ldYn~~Fk~q~~~~~~~ 770 (798)
T COG2374 712 DRYSYV---FNG---QS-GTLDHALASASLAA-------------QVSGATEWHIN-ADEPDALDYNLEFKGQNVSLYKT 770 (798)
T ss_pred CceEEE---ECC---cc-chHhhhhhhhhhhh-------------hccCceeeeec-ccccchhhhhhhhcccccccccc
Confidence 236542 221 11 25999999998865 34444333210 00110 0111110
Q ss_pred CCCCCCCCCCccceEEEEeccC
Q 010035 195 GMSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 195 ~~~~~~~gSDH~PV~~~L~~~~ 216 (519)
......|||=||++.|++.-
T Consensus 771 --~~~fR~SDHDPvvvglnL~~ 790 (798)
T COG2374 771 --TNPFRASDHDPVVVGLNLLG 790 (798)
T ss_pred --CCccccCCCCCeEEEEEecc
Confidence 12467899999999998764
No 25
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=94.48 E-value=0.019 Score=57.82 Aligned_cols=49 Identities=27% Similarity=0.501 Sum_probs=38.9
Q ss_pred CCCCcCCCCCCCcccccccCCCCCCCcceeecCCCCCCCCCCCCCCCceeecCCCC
Q 010035 461 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 516 (519)
Q Consensus 461 ~~~P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~~~~~ 516 (519)
.++|+|. | -||.+. ||+.|+---|.||+|+--+- ...-|+||+|.++.-
T Consensus 11 ~~~P~C~-H-GP~LLF-~K~~~~E~~~~F~ACs~~R~----d~kfC~F~~~~d~~~ 59 (325)
T KOG4399|consen 11 VPAPLCP-H-GPTLLF-VKVTQKEETRRFYACSACRM----DDKFCHFFMFEDEFF 59 (325)
T ss_pred CCCCcCC-C-CCeEEE-EEccCcchheeeehhhhhhc----chhccchhhhccccc
Confidence 5789999 6 688765 57889999999999986432 356799999998753
No 26
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=93.17 E-value=0.28 Score=53.81 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=34.1
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh---cCCcEEEeCCCCCCCCc
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC---QGRRIFVVGDLNIAPAA 83 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~---~g~~VII~GDfN~~~~~ 83 (519)
.+.|.|.|.=.......+ |++....|.+.+++..+ .+.++|+|||||+.|+.
T Consensus 253 ~ilVanTHLl~np~~~~v----rL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 253 GILVANTHLLFNPSRSDV----RLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred ceEEEeeeeeecCcccch----hhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 688888877554322234 44555556666665543 34599999999999864
No 27
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=93.06 E-value=0.89 Score=51.32 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.6
Q ss_pred CCCCCccceEEEEeccC
Q 010035 200 LEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 200 ~~gSDH~PV~~~L~~~~ 216 (519)
+..|||-||++.|....
T Consensus 577 i~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 577 IRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cccCCchhcceEEEEEE
Confidence 68899999999997653
No 28
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=92.89 E-value=0.23 Score=52.94 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCCCCccceEEEEeccC
Q 010035 200 LEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 200 ~~gSDH~PV~~~L~~~~ 216 (519)
...|||.|++++|++.+
T Consensus 337 ~~pSDHi~L~~ef~~~~ 353 (361)
T KOG0620|consen 337 HHPSDHIPLLAEFEIAP 353 (361)
T ss_pred CCCCccchhhccccccC
Confidence 68999999999998765
No 29
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=92.87 E-value=0.58 Score=49.60 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=34.4
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh----------cCC-cEEEeCCCCCCCCcc
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC----------QGR-RIFVVGDLNIAPAAI 84 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~----------~g~-~VII~GDfN~~~~~i 84 (519)
.+.+.|++.|..-..+.-.+-..+--|+.+..++.+..+ .++ .+.++||||..+...
T Consensus 191 ~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~ 258 (378)
T COG5239 191 TPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASL 258 (378)
T ss_pred ceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecce
Confidence 588888888876433233333344445555555554322 122 679999999987654
No 30
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=89.37 E-value=0.69 Score=50.15 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=14.0
Q ss_pred CCCCCccceEEEEecc
Q 010035 200 LEGSDHAPVYMCLGEV 215 (519)
Q Consensus 200 ~~gSDH~PV~~~L~~~ 215 (519)
++.|||-||++.+...
T Consensus 312 l~~SDHrPV~a~~~~~ 327 (460)
T COG5411 312 LMISDHRPVYATFRAK 327 (460)
T ss_pred eeecCCCeEEEEEecc
Confidence 6899999999999754
No 31
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=73.50 E-value=7.3 Score=40.68 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=37.7
Q ss_pred CEEEEEEEeCCCCCCChhh-------HHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVR-------IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 82 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR-------~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~ 82 (519)
.|-|||||.=+....-.++ ..+|.+=|..+..++..++....++|+.||||.-.+
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 5899999987765432233 234555566666666666667789999999998654
No 32
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=56.80 E-value=3.7 Score=33.77 Aligned_cols=35 Identities=34% Similarity=0.927 Sum_probs=16.2
Q ss_pred CCCcCCCCCCCcccccccCCCCCCCcceeecCCCCCCCCCCCCCCCcee
Q 010035 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510 (519)
Q Consensus 462 ~~P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~ 510 (519)
.+|+|.- ||.|.+| .|+-.||. |.=|+| ..||||+
T Consensus 35 ~vP~Cd~-GE~CAvr----kG~RIGkl---CdC~rG------~~CN~fl 69 (73)
T PF06373_consen 35 QVPSCDV-GEQCAVR----KGPRIGKL---CDCPRG------TSCNFFL 69 (73)
T ss_dssp ---B--S-SS-SEEE-----SSSEEE-----B--TT--------B-TTT
T ss_pred cCCCCCC-Cchhhhc----cccccccc---cCCCCC------CchhhhH
Confidence 5899996 9999754 48888874 544444 7899996
No 33
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=54.80 E-value=4.4 Score=43.29 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 010035 351 SQLGQLSLKSFFHKR 365 (519)
Q Consensus 351 ~~~~Q~sL~sFF~~~ 365 (519)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 456899999999863
No 34
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=49.57 E-value=21 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.0
Q ss_pred ceeecCCCCCCCCCCCCCCCceeecCC
Q 010035 488 RFFVCARAEGPASNPEANCGYFKWAFS 514 (519)
Q Consensus 488 ~Fy~C~~p~g~~~~~~~~C~fF~W~~~ 514 (519)
.||.|+.- -.|.|..|...
T Consensus 20 ~F~~Cs~y--------P~C~~~~~~~~ 38 (39)
T PF01396_consen 20 KFLGCSNY--------PECKYTEPLPK 38 (39)
T ss_pred CEEECCCC--------CCcCCeEeCCC
Confidence 99999861 26999999764
No 35
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=36.82 E-value=37 Score=29.78 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=30.9
Q ss_pred CCCcCCCCCCCcccccccCCCCCCCcceeecCC--CCCCCCCCCCCCCceeec
Q 010035 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR--AEGPASNPEANCGYFKWA 512 (519)
Q Consensus 462 ~~P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~--p~g~~~~~~~~C~fF~W~ 512 (519)
.+.-|.| +..-|..| ...-...|..||.|+- ..|| ...|+|-.|-
T Consensus 19 v~ie~dc-nakvvvat-s~dpvts~klyfscpyeisdg~----g~~~gfkrww 65 (122)
T PF05325_consen 19 VPIECDC-NAKVVVAT-SRDPVTSGKLYFSCPYEISDGP----GRGCGFKRWW 65 (122)
T ss_pred cceeccC-CceEEEEe-ccCCcccceeeecCccccccCC----CCCccceeEE
Confidence 4556888 34433333 3456788999999987 3453 4789999984
No 36
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=28.08 E-value=1.8e+02 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 010035 27 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 63 (519)
Q Consensus 27 ~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ 63 (519)
..+++|.|-+=.+.. .+.|.+||+.|.+++..
T Consensus 27 ~~~v~I~It~~~gRs-----~e~K~~ly~~l~~~L~~ 58 (82)
T PF14552_consen 27 DDFVIIQITSGAGRS-----TEQKKALYRALAERLAE 58 (82)
T ss_dssp TT-EEEEEEECS--------HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCC-----HHHHHHHHHHHHHHHHH
Confidence 468899998855443 46789999999999976
No 37
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=24.25 E-value=77 Score=27.49 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.5
Q ss_pred cEEEeCCCCCC
Q 010035 70 RIFVVGDLNIA 80 (519)
Q Consensus 70 ~VII~GDfN~~ 80 (519)
.|-|+||||.-
T Consensus 18 ~V~l~GdFn~W 28 (99)
T cd02854 18 EVYLIGDFNNW 28 (99)
T ss_pred EEEEEccCCCC
Confidence 56778999963
No 38
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=22.66 E-value=1.4e+02 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCC
Q 010035 50 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNI 79 (519)
Q Consensus 50 Kl~F~~~L~~ri~~ll~~g~~VII~GDfN~ 79 (519)
+..|+..+...+-.....+..+|++|||+-
T Consensus 5 ~~d~~hk~a~~iv~~~~~~~~~Ivie~L~~ 34 (82)
T TIGR01766 5 VEDFLHKIVKQIVEYAKENNGTIVLEDLKN 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccc
Confidence 446666666666543323557899999993
No 39
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.73 E-value=2.8e+02 Score=25.76 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCC
Q 010035 51 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 123 (519)
Q Consensus 51 l~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~ 123 (519)
..|...|...++.+.+.+.+||+++..-.....+ . . ...+...+++.+..+.+..|+|+|..+-..
T Consensus 91 ~~~~~~l~~lv~~~~~~~~~vili~~pp~~~~~~---~--~--~~~~~~~~~~~~a~~~~~~~id~~~~~~~~ 156 (200)
T cd01829 91 EEYRQRIDELLNVARAKGVPVIWVGLPAMRSPKL---S--A--DMVYLNSLYREEVAKAGGEFVDVWDGFVDE 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCCChhH---h--H--HHHHHHHHHHHHHHHcCCEEEEhhHhhcCC
Confidence 3455555555555555688999998743321110 0 0 001123455565555667899998777543
No 40
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=20.70 E-value=1e+02 Score=34.38 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.4
Q ss_pred CCCCCCCC-CCCCCCccceEEEEec
Q 010035 191 RWKGGMST-RLEGSDHAPVYMCLGE 214 (519)
Q Consensus 191 ~w~~~~~~-~~~gSDH~PV~~~L~~ 214 (519)
-|+.|.-. +.++|||.-+++.|.+
T Consensus 469 ~~k~~~p~~~~~~SDH~aL~~~~~~ 493 (495)
T KOG2338|consen 469 MWKAGQPPNGRYGSDHIALVAQFSL 493 (495)
T ss_pred hhccCCCCCCCCcccceEeeEeeEe
Confidence 35655544 5899999999999875
No 41
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=20.51 E-value=75 Score=34.34 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=30.6
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcc
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAI 84 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~i 84 (519)
.|.++.=||-+++. .||.= +.++..-.++ .+...-||-.||||+.+..|
T Consensus 45 tvgfFHPYCNAGGG--GErVL-----W~Avr~~q~k-~~n~~~viYsGD~n~t~~~I 93 (465)
T KOG1387|consen 45 TVGFFHPYCNAGGG--GERVL-----WKAVRITQRK-FPNNVIVIYSGDFNVTPENI 93 (465)
T ss_pred EEEEecccccCCCC--cceeh-----hHHHHHHHHh-CCCceEEEEeCCCCCCHHHH
Confidence 35677779977765 46642 2333332222 24556788899999988654
Done!