Query 010035
Match_columns 519
No_of_seqs 362 out of 1523
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 6.1E-32 2.1E-36 264.3 20.6 176 2-215 69-258 (265)
2 2j63_A AP-endonuclease; base e 100.0 7.8E-31 2.7E-35 281.6 20.8 164 15-214 266-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.8E-27 6.1E-32 229.7 16.7 178 2-213 64-256 (257)
4 2jc5_A Exodeoxyribonuclease; h 99.9 1.2E-26 4E-31 223.3 16.7 177 2-215 67-257 (259)
5 1hd7_A DNA-(apurinic or apyrim 99.9 8E-27 2.7E-31 235.7 15.8 174 2-213 129-317 (318)
6 2jc4_A Exodeoxyribonuclease II 99.9 1.7E-26 5.8E-31 221.9 17.0 179 2-213 63-255 (256)
7 2o3h_A DNA-(apurinic or apyrim 99.9 1.9E-26 6.6E-31 226.9 17.7 174 2-213 96-284 (285)
8 1ako_A Exonuclease III; AP-end 99.9 5.2E-26 1.8E-30 219.9 14.3 180 2-213 63-267 (268)
9 1vyb_A ORF2 contains A reverse 99.9 2.3E-23 8E-28 197.4 14.1 157 2-213 72-238 (238)
10 2ei9_A Non-LTR retrotransposon 99.9 6.9E-22 2.4E-26 193.8 10.5 157 2-216 56-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.8 9.1E-19 3.1E-23 169.2 13.8 154 2-214 81-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.7 9.3E-17 3.2E-21 166.5 15.2 159 2-213 185-361 (362)
13 3teb_A Endonuclease/exonucleas 99.7 5.6E-17 1.9E-21 156.3 11.1 156 2-214 93-266 (266)
14 4fva_A 5'-tyrosyl-DNA phosphod 99.7 4.2E-16 1.5E-20 148.1 15.3 159 2-213 79-255 (256)
15 3l1w_A Uncharacterized protein 99.6 2.1E-15 7.3E-20 145.5 13.7 129 28-216 125-253 (257)
16 3g6s_A Putative endonuclease/e 99.6 3E-15 1E-19 145.5 13.8 132 28-216 131-262 (267)
17 4gz1_A Tyrosyl-DNA phosphodies 99.6 1.6E-14 5.4E-19 136.9 13.6 139 28-215 115-255 (256)
18 1zwx_A SMCL, sphingomyelinase- 99.6 1.5E-14 5E-19 142.8 13.6 130 2-155 101-256 (301)
19 2ddr_A Sphingomyelin phosphodi 99.5 6.3E-14 2.1E-18 138.4 14.9 138 2-156 101-262 (306)
20 3mpr_A Putative endonuclease/e 99.5 5.4E-14 1.8E-18 140.1 13.6 146 28-216 135-291 (298)
21 4f1h_A Tyrosyl-DNA phosphodies 99.5 8.5E-14 2.9E-18 129.5 13.9 150 17-213 93-249 (250)
22 3i41_A Beta-hemolysin; beta to 99.4 4.3E-12 1.5E-16 128.2 16.4 132 2-156 120-275 (317)
23 4b8c_D Glucose-repressible alc 98.9 5.6E-10 1.9E-14 125.4 3.4 56 28-83 548-610 (727)
24 3ngq_A CCR4-NOT transcription 98.6 2.8E-07 9.7E-12 97.0 14.8 51 29-83 197-260 (398)
25 1sr4_B CDT B, cytolethal diste 98.6 3.9E-07 1.3E-11 90.9 13.5 73 3-81 97-182 (261)
26 2f1n_A CDT B, cytolethal diste 98.5 2.3E-07 7.7E-12 92.2 9.9 73 3-83 108-192 (262)
27 2a40_B Deoxyribonuclease-1; WA 98.3 1.5E-07 5.2E-12 91.5 2.8 46 28-82 127-174 (260)
28 2imq_X Salivary nitrophorin; f 98.1 2.2E-06 7.4E-11 85.7 5.2 57 21-82 117-177 (282)
29 1i9z_A Synaptojanin, phosphati 97.9 4.9E-05 1.7E-09 78.6 10.8 49 28-80 159-211 (347)
30 2xsw_A 72 kDa inositol polypho 97.7 0.00097 3.3E-08 69.2 17.1 31 200-231 306-336 (357)
31 3mtc_A Type II inositol-1,4,5- 95.5 0.11 3.8E-06 52.8 12.4 51 28-82 136-196 (313)
32 4a9c_A Phosphatidylinositol-3, 94.3 0.31 1.1E-05 49.6 12.0 49 28-80 138-195 (316)
33 1hy9_A Cocaine and amphetamine 66.3 2.5 8.6E-05 30.0 1.6 35 462-510 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 25.2 16 0.00056 23.3 0.2 12 354-365 8-19 (26)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=6.1e-32 Score=264.32 Aligned_cols=176 Identities=29% Similarity=0.506 Sum_probs=153.1
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|||||+|.++.. .|.+||+|.++++.|+|+|||+|+... ..+|+.+|+.|++.|..++..+...+.++|
T Consensus 69 ~Gvail~k~~~~~~~~~~~~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~r~~~~~~l~~~~~~~~~~~~~~i 147 (265)
T 3g91_A 69 SGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKYKLEFYDAFLEDVNRERDSGRNVI 147 (265)
T ss_dssp CCEEEEESSCCSEEECCCSCHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEecChHHhccCCCCcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 4999999997543 368999999999999999999999986 578999999999999999998876689999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
|+||||+++.++|..++. .+|.+.+ |.+|+.++ +. +|+|+||.+||.. +.||||+++.+++..|.|+|||
T Consensus 148 i~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~--gl~D~~r~~~p~~-~~yT~~~~~~~~~~~~~~~rID 222 (265)
T 3g91_A 148 ICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-EN--GYVDTFRMFNSDP-GQYTWWSYRTRARERNVGWRLD 222 (265)
T ss_dssp EEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HT--TEEETHHHHCCCS-CCCSBCCSSTTTTTTTCCBCCE
T ss_pred EECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hc--CcEEeeHhhCCCC-CCCCCcCCCCCccccCceEEEE
Confidence 999999999999987642 4566655 88999988 44 5999999999996 5899999999999999999999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEecc
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 215 (519)
|||+++.++ ..|.++.|+.. ..+|||+||+++|...
T Consensus 223 ~il~s~~~~-------------~~~~~~~i~~~-------------------~~~SDH~Pv~~~~~~~ 258 (265)
T 3g91_A 223 YFFVNEEFK-------------GKVKRSWILSD-------------------VMGSDHCPIGLEIELL 258 (265)
T ss_dssp EEEEEGGGG-------------GGEEEEEECTT-------------------CCSSSBCCEEEEEECC
T ss_pred EEEECHHHH-------------hhhcEEEEeCC-------------------CCCCCcceEEEEhhhh
Confidence 999999874 37899999864 4789999999999754
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.97 E-value=7.8e-31 Score=281.63 Aligned_cols=164 Identities=26% Similarity=0.405 Sum_probs=137.9
Q ss_pred ccCCCCEEEEEE----------CCEEEEEEEeCCCCCCChhhHHHHH-HHHHHHHHHHHHHHh-----------------
Q 010035 15 IDSEGRCVITDH----------GHFILFNVYGPRADSEDTVRIQFKL-QFFHVLQKRWEFLLC----------------- 66 (519)
Q Consensus 15 lD~EGR~Ii~~~----------~~~vLiNVY~P~~~~~~~eR~~fKl-~F~~~L~~ri~~ll~----------------- 66 (519)
.|.|||+|.+++ ..|+|+|||+|+.+. ..+|+.||+ .|++.|..++..+..
T Consensus 266 ~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~-~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~ 344 (467)
T 2j63_A 266 GDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGM-GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSG 344 (467)
T ss_dssp CCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCT-TSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------
T ss_pred cCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCc-chHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhccc
Confidence 367999999998 579999999999874 367899998 466888888887642
Q ss_pred -cCCcEEEeCCCCCCCCcccccCC--------CCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCC
Q 010035 67 -QGRRIFVVGDLNIAPAAIDRCDA--------GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGA 137 (519)
Q Consensus 67 -~g~~VII~GDfN~~~~~iD~~d~--------~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~a 137 (519)
.+.+||||||||+++..+|++++ ..+|.+.+ |.||+.+|... +|+|+||.+||...+.||||+++.++
T Consensus 345 ~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~e-r~~~~~lL~~~--gL~DafR~~~p~~~~~yTw~s~r~~~ 421 (467)
T 2j63_A 345 SSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEE-RMSFRETMQRT--NSVDIFRQLYPQAGPVYSFWSQRING 421 (467)
T ss_dssp CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHH-HHHHHHHHHHT--TEEEHHHHHCTTBCSCCSBCCTTTTT
T ss_pred ccCCcEEEeccccCCCchhhhccccchhhcccccccCHHH-HHHHHHHHhhC--CCEEehHhhCCCCCCCccccCCCCCc
Confidence 36899999999999999998762 24677666 99999988654 59999999999765789999999999
Q ss_pred ccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEec
Q 010035 138 EQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214 (519)
Q Consensus 138 r~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 214 (519)
+..|.|+||||||+++.+. .+|.+|.|+.+ ..+||||||+++|..
T Consensus 422 ~~~n~g~RIDyIlvS~~l~-------------~~v~~~~I~~~-------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 422 RPRNLGWRLDYFVVSSRLA-------------SYVVDCFPMPT-------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp TTTTCCBCCEEEEEEGGGG-------------GGEEEEEECTT-------------------CCSSSBCCEEEEEEC
T ss_pred ccCCCCceeEEEEEcHHHH-------------cceeEEEECCC-------------------CCCCCcccEEEEEEc
Confidence 9899999999999998763 36899999764 579999999999964
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.95 E-value=1.8e-27 Score=229.69 Aligned_cols=178 Identities=27% Similarity=0.351 Sum_probs=143.3
Q ss_pred CceEEEecCcccc----c-----cCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK----I-----DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~----l-----D~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|+|||+|.++.. + | +||+|.++++.|.|+|||+|+......+|+.+|++|++.|..+++.+...+.++|
T Consensus 64 ~G~ailsr~~~~~~~~~~~~~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~I 142 (257)
T 2voa_A 64 NGVAIASLEEPEDVSFGLDSEPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAV 142 (257)
T ss_dssp EEEEEEESSCCEEEEESCSSSSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEE
T ss_pred cEEEEEEccChHHheecCCCCccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4899999997542 1 3 8999999999999999999998754457888899999999999887655678999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCC-CCCCccCCcccee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS-NTGAEQFNYGTRI 146 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~-~~~ar~~N~GsRI 146 (519)
|+||||+.+..+|.+++. .++...+ +.+|+.++ +. +|+|+||.+||.. +.||||+. +.+++..+.|+||
T Consensus 143 l~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~--~l~D~~~~~~p~~-~~~T~~~~~~~~~~~~~~~~rI 217 (257)
T 2voa_A 143 WCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-EL--GFVDVLRKIHPNE-RIYTFYDYRVKGAIERGLGWRG 217 (257)
T ss_dssp EEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TT--TCEEHHHHHSTTC-CCCSBCCTTSTTTTTTTCCBCC
T ss_pred EEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-Hc--CcEeeehhhCCCC-CCcceeccccCCceecCceEEE
Confidence 999999999988876532 3454444 77888887 33 5999999999985 67999998 7777777889999
Q ss_pred eEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 147 DyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
||||+++.+. ..|.++.|....+.+ ..+|||+||+++|.
T Consensus 218 D~i~~s~~~~-------------~~~~~~~v~~~~~~~---------------~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 218 DAILATPPLA-------------ERCVDCYADIKPRLA---------------EKPSDHLPLVAVFD 256 (257)
T ss_dssp EEEEECHHHH-------------TTEEEEEECCHHHHS---------------SSCCSBCCEEEEEC
T ss_pred EEEEECHHHH-------------hhhheeEeehhhccC---------------CCCCCccCEEEEEe
Confidence 9999998763 258889887643211 37999999999985
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.94 E-value=1.2e-26 Score=223.34 Aligned_cols=177 Identities=28% Similarity=0.412 Sum_probs=144.2
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|++||+|.++.. .|.+||++.++++.|.|+|||+|+... ..+|..+|+.|++.|..+++.+...+.++|
T Consensus 67 ~G~ailsr~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~~~~~~~~l~~~~~~~~~~~~~~I 145 (259)
T 2jc5_A 67 SGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQVKYRFLDAFYPMLEAMKNEGRDIV 145 (259)
T ss_dssp CCEEEEESSCCSEEEESCSCHHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred ceEEEEEecCceeEEeCCCCCccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 5899999998543 257999999999999999999999875 468888999999999999987755689999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
|+||||+.+..+|..... .+|.+.+ +.+|..++... +|+|+||..+|... .||||+.....+..+.|.|||
T Consensus 146 l~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~d~~~~~~~~~~-~~T~~~~~~~~~~~~~~~rID 221 (259)
T 2jc5_A 146 VCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKL--GWTDMWRTLYPDVP-GYTWWSNRGQAYAKDVGWRID 221 (259)
T ss_dssp EEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTT--CCEEHHHHHCTTCC-CCCEESCSSHHHHTTCEECCE
T ss_pred EEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccC--CcEEeeHhhCCCCC-CccEECCcCCCccCCCeeEEE
Confidence 999999999988875432 2444444 77888888543 59999999999754 499999887666677899999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEecc
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 215 (519)
|||+++.+. ..|.++.|+.. ..+|||+||+++|.+.
T Consensus 222 ~i~~s~~~~-------------~~~~~~~v~~~-------------------~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 222 YQMVTPELA-------------AKAVSAHVYKD-------------------EKFSDHAPLVVEYDYA 257 (259)
T ss_dssp EEEECHHHH-------------TTEEEEEECCS-------------------SCCSSBCCEEEEESCC
T ss_pred EEEECHHHH-------------hHHhheeecCC-------------------CCCCCcccEEEEEecc
Confidence 999998652 25888998753 5899999999999753
No 5
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.94 E-value=8e-27 Score=235.75 Aligned_cols=174 Identities=29% Similarity=0.446 Sum_probs=141.6
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.||+||+|.++.. .|.+||+|.++++.|+|+|||+|+... ..+|+.+|++|++.|..+++.+.. ..+||
T Consensus 129 ~Gvailsr~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~~r~~~~~~l~~~l~~~~~-~~pvI 206 (318)
T 1hd7_A 129 SGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLEYRQRWDEAFRKFLKGLAS-RKPLV 206 (318)
T ss_dssp CCEEEEESSCCSEEEESCSCGGGSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHHHHHHHHHHHHHHHHHHHH-HSCEE
T ss_pred ceEEEEEcCCceeEEecCCCcccCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHHHHHHHHHHHHHHHHhccc-CCCEE
Confidence 4899999987432 367999999999999999999998764 346788899999999999987643 38999
Q ss_pred EeCCCCCCCCcccccCC-----CCCCCchHHHHHH-HHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCcccee
Q 010035 73 VVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~-----~~~f~~~e~R~~l-~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRI 146 (519)
|+||||+.+..+|++.+ ..+|...+ +.+| ..++.. +|+|+||.+||...+.||||++...++..+.|.||
T Consensus 207 l~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~---~l~D~~r~~~p~~~~~~T~~~~~~~~~~~~~~~rI 282 (318)
T 1hd7_A 207 LCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV---PLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRL 282 (318)
T ss_dssp EEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT---TCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCC
T ss_pred EEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC---CCEEeehhhCCCCCCCcceECCcCCCcccCCceEE
Confidence 99999999998886532 34566554 7888 888852 59999999999854469999988776667889999
Q ss_pred eEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 147 DyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
||||+++.+. ..|.++.|... ..+|||+||+++|.
T Consensus 283 D~il~s~~~~-------------~~v~~~~v~~~-------------------~~~SDH~Pv~~~l~ 317 (318)
T 1hd7_A 283 DYFLLSHSLL-------------PALCDSKIRSK-------------------ALGSDHCPITLYLA 317 (318)
T ss_dssp EEEEECGGGG-------------GGEEEEEECTT-------------------CCSSSBCCEEEEEC
T ss_pred EEEEECHHHH-------------hhhhheEeecc-------------------CCCCCccCEEEEec
Confidence 9999998763 25889999763 46899999999985
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.94 E-value=1.7e-26 Score=221.87 Aligned_cols=179 Identities=26% Similarity=0.388 Sum_probs=144.2
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|++||+|.++.. .|.++|++.++++.|.|+|||+|+......+++.+|+.|++.|..+++.++..+.+||
T Consensus 63 ~G~ailsr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~i 142 (256)
T 2jc4_A 63 NGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLV 142 (256)
T ss_dssp CCEEEEESSCCEEEEESCTTSTTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred eEEEEEECCChHHheecCCCCccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4899999997542 2468999999999999999999998764567888899999999999988766789999
Q ss_pred EeCCCCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceee
Q 010035 73 VVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 147 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~-----~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRID 147 (519)
|+||||+.+...|..++ ..++.+.+ +.+|+.++. . +|+|+||.++|.. +.||||++..+.+..+.+.|||
T Consensus 143 l~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~~-~--~l~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~rID 217 (256)
T 2jc4_A 143 LLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLLD-L--GLTDSLRQVHPEG-AFYTWFDYRGAMFQRKLGLRID 217 (256)
T ss_dssp EEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHHT-T--TCEEHHHHHCCSS-CCCCBCCTTTTHHHHTCCBCCE
T ss_pred EEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHHh-c--CcEEhhhhhCCCC-CceeeEcCCCCccccCcEEEEE
Confidence 99999999988776542 23455444 778888773 3 5999999999985 6799999887766667889999
Q ss_pred EEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 148 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 148 yILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
|||+++.+. ..|.++.|+...+. ...+|||+||+++|.
T Consensus 218 ~i~~s~~~~-------------~~~~~~~v~~~~~~---------------~~~~SDH~pv~~~l~ 255 (256)
T 2jc4_A 218 HILVSPAMA-------------AALKDVRVDLETRA---------------LERPSDHAPVTAEFD 255 (256)
T ss_dssp EEEECHHHH-------------TTEEEEEECHHHHT---------------SSSCCSBCCEEEEEC
T ss_pred EEEECHHHH-------------hheeEEEEEhhccc---------------CCCCCCcccEEEEec
Confidence 999998753 25889999764321 147999999999985
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.94 E-value=1.9e-26 Score=226.89 Aligned_cols=174 Identities=29% Similarity=0.444 Sum_probs=141.2
Q ss_pred CceEEEecCcccc---------ccCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKDELLK---------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~~l~~---------lD~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|++||+|.++.. .|.+||+|.++++.|+|+|||+|+... ..+|+++|++|++.|..+++.+. .+.+||
T Consensus 96 ~Gvailsr~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~~r~~~~~~l~~~l~~~~-~~~p~I 173 (285)
T 2o3h_A 96 SGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLEYRQRWDEAFRKFLKGLA-SRKPLV 173 (285)
T ss_dssp CCEEEEESSCCSEEEESCSCGGGSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHHHHHHHHHHHHHHHHHHH-TTSCEE
T ss_pred ceEEEEEccChHHeeeccCCcccCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHHHHHHHHHHHHHHHHhhc-cCCCEE
Confidence 4899999987432 367999999999999999999998764 35688889999999999998764 358999
Q ss_pred EeCCCCCCCCcccccCCC-----CCCCchHHHHHH-HHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCcccee
Q 010035 73 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 146 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~-----~~f~~~e~R~~l-~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRI 146 (519)
|+||||+.+..+|.+.+. .+|...+ +.+| ..++.. +|+|+||.+||+..+.||||+....++..+.+.||
T Consensus 174 l~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~---~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rI 249 (285)
T 2o3h_A 174 LCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV---PLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRL 249 (285)
T ss_dssp EEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT---TCEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCC
T ss_pred EEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC---CCEEEEEecCCCCCCcEeEecCcCCccccCceeEE
Confidence 999999999888875432 3455444 7888 888853 59999999999854469999988776666789999
Q ss_pred eEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 147 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 147 DyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
||||+++.+. ..|.++.|... ..+|||+||+++|.
T Consensus 250 D~i~~s~~~~-------------~~v~~~~v~~~-------------------~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 250 DYFLLSHSLL-------------PALCDSKIRSK-------------------ALGSDHCPITLYLA 284 (285)
T ss_dssp EEEEECGGGG-------------GGEEEEEECTT-------------------CCSSSBCCEEEEEC
T ss_pred EEEEECHHHH-------------hhhhheEeecc-------------------CCCCCeecEEEEec
Confidence 9999998763 25889999763 46899999999986
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.93 E-value=5.2e-26 Score=219.91 Aligned_cols=180 Identities=24% Similarity=0.439 Sum_probs=141.0
Q ss_pred CceEEEecCccccc---------cCCCCEEEEEE----CCEEEEEEEeCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 010035 2 EGLEDFSKDELLKI---------DSEGRCVITDH----GHFILFNVYGPRADSE-DTVRIQFKLQFFHVLQKRWEFLLCQ 67 (519)
Q Consensus 2 ~Gvailsr~~l~~l---------D~EGR~Ii~~~----~~~vLiNVY~P~~~~~-~~eR~~fKl~F~~~L~~ri~~ll~~ 67 (519)
.|++||+|.++..+ +.+++++.+++ +.|+|+|+|+|+.... .+++..+|..|++.|..+++.+...
T Consensus 63 ~G~ailsr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 142 (268)
T 1ako_A 63 YGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKR 142 (268)
T ss_dssp EEEEEEESSCCSEEEESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ceEEEEEecCcceeeeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhC
Confidence 48999999986442 34688988887 4799999999987642 2357778899999999999876556
Q ss_pred CCcEEEeCCCCCCCCcccccC-----------CCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCC
Q 010035 68 GRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 136 (519)
Q Consensus 68 g~~VII~GDfN~~~~~iD~~d-----------~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ 136 (519)
+.+|||+||||+.+...|... ...+|.+.+ +.+++.++. . +|+|+||.+||...+.||||+++.+
T Consensus 143 ~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~~-~--gl~D~~~~~~~~~~~~~T~~~~~~~ 218 (268)
T 1ako_A 143 DNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLMS-W--GLVDTFRHANPQTADRFSWFDYRSK 218 (268)
T ss_dssp TSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHHH-T--TEEEHHHHHSTTCCSCCSBCCTTTT
T ss_pred CCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHhc-C--CCEEeEhhhCCCCCCCeeEeCCcCC
Confidence 789999999999998887642 224566654 778887763 3 5999999999986567999999887
Q ss_pred CccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 137 AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 137 ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
+++.|.|.||||||+++.+. ..+.++.|....+.+ ..+|||+||+++|.
T Consensus 219 ~~~~~~~~riD~il~s~~~~-------------~~~~~~~i~~~~~~~---------------~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 219 GFDDNRGLRIDLLLASQPLA-------------ECCVETGIDYEIRSM---------------EKPSDHAPVWATFR 267 (268)
T ss_dssp HHHHTCCBCCEEEEEEHHHH-------------TTEEEEEECHHHHTS---------------SSCCSBCCEEEEEC
T ss_pred ccccCceEEEEEEEeCHHHH-------------HHHHhceechhhcCC---------------CCCCCcccEEEEcc
Confidence 77778899999999998763 256788887643221 47899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.90 E-value=2.3e-23 Score=197.43 Aligned_cols=157 Identities=21% Similarity=0.390 Sum_probs=118.9
Q ss_pred CceEEEecCc-ccc-----ccCCCCEEEEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcE
Q 010035 2 EGLEDFSKDE-LLK-----IDSEGRCVITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 71 (519)
Q Consensus 2 ~Gvailsr~~-l~~-----lD~EGR~Ii~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~V 71 (519)
.|++||+|.+ +.. .|.+||+|.+++ ..|.|+|||+|+... + +|++.|...+..+ .+.++
T Consensus 72 ~Gvail~r~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~------~~~~~l~~~l~~~--~~~~~ 140 (238)
T 1vyb_A 72 AGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P------RFIKQVLSDLQRD--LDSHT 140 (238)
T ss_dssp CCEEEEECTTCCCEEEEEEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H------HHHHHHHHHTTTT--CCTTE
T ss_pred ceEEEEEeCCCCccccceeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H------HHHHHHHHHHHhc--cCCCE
Confidence 4999999986 222 478999998876 479999999998753 2 3555555555432 36899
Q ss_pred EEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEE
Q 010035 72 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 151 (519)
Q Consensus 72 II~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILv 151 (519)
||+||||+.+..+|... .++...+ +.+|..++.+. +|+|+||.+||.. ..||||+.+.+ .++||||||+
T Consensus 141 Il~GDFN~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~--~l~d~~~~~~~~~-~~~T~~~~~~~-----~~~rID~i~~ 209 (238)
T 1vyb_A 141 LIMGDFNTPLSTLDRST--RQKVNKD-TQELNSALHQA--DLIDIYRTLHPKS-TEYTFFSAPHH-----TYSKIDHIVG 209 (238)
T ss_dssp EEEEECSSCSSGGGBTT--CCCCCHH-HHHHHHHHHHT--TEEEHHHHHCTTC-CCCSEEETTTT-----EEECCEEEEE
T ss_pred EEEccCCCCCCccccCC--CCCCcHH-HHHHHHHHhhC--CCEEhhHhhCCCC-CceeEEcCCCC-----cccceEEEEe
Confidence 99999999988877654 2344444 77888888654 5999999999975 56999987643 3589999999
Q ss_pred cCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 152 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 152 S~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
++.+. ..+.++.|.. ..+|||+||+++|.
T Consensus 210 s~~~~-------------~~~~~~~v~~--------------------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 210 SKALL-------------SKCKRTEIIT--------------------NYLSDHSAIKLELR 238 (238)
T ss_dssp EGGGG-------------GGEEEEEEEC--------------------CSSSSSCEEEEEEC
T ss_pred CHHHH-------------hhhhhceeec--------------------CCCCCcccEEEEeC
Confidence 98763 2678888875 37899999999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.86 E-value=6.9e-22 Score=193.77 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=107.4
Q ss_pred CceEEEecCc--ccc----c-cCCCCEEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEe
Q 010035 2 EGLEDFSKDE--LLK----I-DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 74 (519)
Q Consensus 2 ~Gvailsr~~--l~~----l-D~EGR~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~ 74 (519)
.||||+++.. +.. + +.++|+|.++++.|+|+|||+|++.. .++|++|++.|...+ .++++||+
T Consensus 56 ~gvail~~~~~~~~~~~~~~~~~~~~~i~i~~~~i~i~svY~P~~~~-----~~~~~~~l~~l~~~~-----~~~~~Ii~ 125 (240)
T 2ei9_A 56 PKAGVYIRNRVLPCAVLHHLSSTHITVVHIGGWDLYMVSAYFQYSDP-----IDPYLHRLGNILDRL-----RGARVVIC 125 (240)
T ss_dssp CSEEEEESSTTSCEEECGGGCCSSEEEEEETTTTEEEEEEECCTTSC-----SHHHHHHHHHHHHHT-----TTSCEEEE
T ss_pred CCEEEEEecCCcceeeecccCCCCEEEEEEeeccEEEEEEEcCCCCc-----hhHHHHHHHHHHHhc-----CCCcEEEE
Confidence 5899999863 211 2 45566777777899999999999864 256677777765432 35799999
Q ss_pred CCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeec--ccCCCCCCCCCcCCCCCCCccCCccceeeEEEEc
Q 010035 75 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR--SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152 (519)
Q Consensus 75 GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R--~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS 152 (519)
||||+++...+.......+.+.+ |.+...+|. +|+|.+| .+||.. +.||||+++. |+||||||+|
T Consensus 126 GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~----~~~d~~~l~~~~~~~-~~~T~~s~~~-------~~rID~~l~s 192 (240)
T 2ei9_A 126 ADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME----DFIGARRLVVHNADG-HLPTFSTANG-------ESYVDVTLST 192 (240)
T ss_dssp EECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH----HHHHHTTCEECCCTT-CCCSEEETTE-------EECCEEEEEC
T ss_pred EecccccccccCCCCCCCCcchh-hHHHHHHHH----HHHHhcCCEecCCCC-CCceEeCCCC-------ceEEEEEEec
Confidence 99999885432110001344433 544455553 3889988 458853 4799998542 6999999999
Q ss_pred CCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEeccC
Q 010035 153 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 153 ~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~~ 216 (519)
+.++ . .++.|.. ..+|||+||+++|....
T Consensus 193 ~~l~--------------~-~~~~i~~--------------------~~~SDH~Pv~~~l~~~~ 221 (240)
T 2ei9_A 193 RGVR--------------V-SEWRVTN--------------------ESSSDHRLIVFGVGGGT 221 (240)
T ss_dssp TTCC--------------E-EEEEECS--------------------CCSSSBCCEEEEEEC--
T ss_pred Cccc--------------c-CCeEECC--------------------CCCCCcccEEEEECCCC
Confidence 9863 2 5566642 47999999999998754
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.78 E-value=9.1e-19 Score=169.17 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=100.9
Q ss_pred CceEEEecC-ccc--c---ccCCCCE-EEEEE--CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEE
Q 010035 2 EGLEDFSKD-ELL--K---IDSEGRC-VITDH--GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 72 (519)
Q Consensus 2 ~Gvailsr~-~l~--~---lD~EGR~-Ii~~~--~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VI 72 (519)
.|+|||++. .+. . .+.+|.. +.++. +.|+|+|||+|+.... ..|++.|...++.+ .+.++|
T Consensus 81 ~GvaIl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~--------~~~~~~l~~~~~~~--~~~~~I 150 (245)
T 1wdu_A 81 VKAAIAVFDHDLDVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI--------ESYLEQIKRVERKM--GPKRLI 150 (245)
T ss_dssp CCEEEEECCSSCEEEECTTTCCSSEEEEEEECSSCEEEEEEEECCTTSCS--------HHHHHHHHHHHHTT--CSSSEE
T ss_pred CCeEEEEECCCcceEEecccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH--------HHHHHHHHHHHHHh--CCCcEE
Confidence 489999964 321 1 2334432 23333 4799999999987531 24666666655543 457999
Q ss_pred EeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEc
Q 010035 73 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 152 (519)
Q Consensus 73 I~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS 152 (519)
|+||||+.+..++.. ... +.+.+|..++...| | +..+|. +.||||+++.+ .+.++||||||++
T Consensus 151 i~GDfN~~~~~~~~~-----~~~-~~~~~l~~~~~~~~--l----~~~~~~--~~~T~~~~~~~---~~~~~rID~i~~s 213 (245)
T 1wdu_A 151 FGGDANAKSTWWGSK-----EDD-ARGDQLMGTLGELG--L----HILNEG--DVPTFDTIRGG---KRYQSRVDVTFCT 213 (245)
T ss_dssp EEEECCCCCGGGTCS-----SCC-HHHHHHHHHHHHHT--C----EECCCS--CCCSEEC--------CCEECCEEEEEC
T ss_pred EEeccccCcccCCCC-----CcC-cchHHHHHHHHHCC--c----EEecCC--CCCcEECCCCC---CCCCCEEEEEEeC
Confidence 999999987544321 112 22566777776554 4 455663 46999997653 2457999999999
Q ss_pred CCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEec
Q 010035 153 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214 (519)
Q Consensus 153 ~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 214 (519)
+.++ ..|.++.|... ..+|||+||+++|.+
T Consensus 214 ~~~~-------------~~v~~~~v~~~-------------------~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 214 EDML-------------DLIDGWRVDED-------------------LVSSDHNGMVFNIRL 243 (245)
T ss_dssp GGGB-------------TTEEEEEECTT-------------------SSSSSBCCEEEEECC
T ss_pred hHHH-------------hhccceEEcCC-------------------CCCCCcccEEEEEEe
Confidence 8764 36788998752 589999999999964
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.70 E-value=9.3e-17 Score=166.54 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=103.5
Q ss_pred CceEEEecCccccc---------cCCCCE-EEEEE--C--CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHH--
Q 010035 2 EGLEDFSKDELLKI---------DSEGRC-VITDH--G--HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-- 65 (519)
Q Consensus 2 ~Gvailsr~~l~~l---------D~EGR~-Ii~~~--~--~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll-- 65 (519)
.|++||+|.++... ...+|. +.+++ + .|.|+|+|.++......+ |...+..|..++..+.
T Consensus 185 ~G~aIlsk~~i~~~~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~----R~~Q~~~l~~~~~~~~~~ 260 (362)
T 4gew_A 185 YYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQ----RCAQFGFCMDKVREIIAQ 260 (362)
T ss_dssp SEEEEEEETTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHH----HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeccCccccccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccchhH----HHHHHHHHHHHhHhhhhc
Confidence 48999999864221 234553 34443 2 699999999987542222 3334444444444432
Q ss_pred hcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCC--cc
Q 010035 66 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN--YG 143 (519)
Q Consensus 66 ~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N--~G 143 (519)
..+.+|||+||||+.+...+.. . .+|.|+||.+++.....||||.+.......+ .+
T Consensus 261 ~~~~pvIl~GDFN~~p~~~~~~---------------------~-~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~ 318 (362)
T 4gew_A 261 NPGALVFFGGDLNLRDEEVSRV---------------------P-DGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAK 318 (362)
T ss_dssp CTTCEEEEEEECCCCGGGCCCC---------------------C-TTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCE
T ss_pred CCCCCeEEeecCCCCCcccchh---------------------c-chHHHHHHHhCCCCCCCcCcccccCcccccCCCCC
Confidence 4578999999999876543210 1 2599999999877656799998776554433 45
Q ss_pred ceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 144 sRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
.||||||+++.+ .+..+.++...+ ++ ..+..+|||+||+++|.
T Consensus 319 ~RIDyIf~s~~l---------------~~~~~~vi~~~r------i~------~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 319 MRFDRLYWSGPL---------------DKVKFTLEGRQR------IR------SCLCFPSDHWAINATFF 361 (362)
T ss_dssp ECCEEEEEESSC---------------CEEEEEEECCSC------CT------TTSSCSCSSCEEEEEEE
T ss_pred cceEEEEEcCCc---------------ceeEEEEEeeee------cC------CCCCCCCcccCEEEEEc
Confidence 899999999876 455566543211 00 11346899999999985
No 13
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.69 E-value=5.6e-17 Score=156.27 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=102.4
Q ss_pred CceEEEecCccccc-----c-------CCCC-EEEEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----D-------SEGR-CVITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 64 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----D-------~EGR-~Ii~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~l 64 (519)
.|++||+|.++... . .+.| ++.+.+ ..|.|+|+|.+........| ...++.|..++
T Consensus 93 ~g~ailsr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r----~~q~~~l~~~~--- 165 (266)
T 3teb_A 93 EGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETEDM----GKNIQTILNRT--- 165 (266)
T ss_dssp EEEEEEESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCH----HHHHHHHHTSS---
T ss_pred CeEEEEECceecCceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChHHH----HHHHHHHHHHH---
Confidence 48999999886431 1 1345 445554 37999999998864322333 23444444433
Q ss_pred HhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCcc-CCcc
Q 010035 65 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ-FNYG 143 (519)
Q Consensus 65 l~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~-~N~G 143 (519)
..+.+|||+||||..+.. . ...++.++. .+|+|+|+..+|.. ..|||..... .+. ...+
T Consensus 166 -~~~~~~il~GDfN~~~~~-----------~---~~~~~~l~~---~~l~d~~~~~~~~~-~~~t~~~~~~-~~~~~~~~ 225 (266)
T 3teb_A 166 -QNSNLKILMGDFNTDAIG-----------N---VAAYENILS---QGLFDTYVMAEKKD-DGITVDKSIH-GWDNDKAK 225 (266)
T ss_dssp -CSCCEEEEEEECCCCTTT-----------C---HHHHHHHHT---TTCEEHHHHCSEEC-CCCCEECC-------CTTE
T ss_pred -hcCCcEEEEeECCCCCCC-----------C---CcHHHhhcc---ccccchHHhhcccc-CCccccCccC-CcCcCCcC
Confidence 237899999999997621 0 234555552 25999999999875 5588844332 232 2467
Q ss_pred ceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEec
Q 010035 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 214 (519)
Q Consensus 144 sRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 214 (519)
.||||||+++.+ .|..+.|+.... .+..+|||+||+++|.+
T Consensus 226 ~riD~i~~s~~~---------------~~~~~~v~~~~~---------------~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 226 KRLDYIFSNKEL---------------KVKESKVIFNNK---------------NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp ECCEEEEESSCC---------------CEEEEEEESSSS---------------SSCCCSSSCEEEEEECC
T ss_pred CeeEEEEeCCCe---------------EEEEEEEEeCCC---------------CCCCcCCccCEEEEEEC
Confidence 899999999875 578888876411 12578999999999863
No 14
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.68 E-value=4.2e-16 Score=148.05 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=98.9
Q ss_pred CceEEEecCcccc-----c----cCCCC-EEEEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHH--
Q 010035 2 EGLEDFSKDELLK-----I----DSEGR-CVITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-- 65 (519)
Q Consensus 2 ~Gvailsr~~l~~-----l----D~EGR-~Ii~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll-- 65 (519)
.|++||++..+.. + ...+| ++.+++ ..|.|+|+|.+.......+|. ..++.+...+..+.
T Consensus 79 ~g~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~----~q~~~~~~~~~~~~~~ 154 (256)
T 4fva_A 79 YYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRC----AQFGFCMDKVREIIAQ 154 (256)
T ss_dssp SEEEEEEETTCEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cceEEEEeecccceecccccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchHHHH----HHHHHHHHHhhhhhhc
Confidence 4899998876422 1 12344 334443 369999999988654222222 22333333333332
Q ss_pred hcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCCCccC--Ccc
Q 010035 66 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQF--NYG 143 (519)
Q Consensus 66 ~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~--N~G 143 (519)
..+.+|||+||||+.+...+.. ..+|.|+|+..++.....|||+......... ..+
T Consensus 155 ~~~~~vIl~GDfN~~~~~~~~~----------------------~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~ 212 (256)
T 4fva_A 155 NPGALVFFGGDLNLRDEEVSRV----------------------PDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAK 212 (256)
T ss_dssp STTCEEEEEEECCCCGGGCCCC----------------------CTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCE
T ss_pred cCCCcEEEeccCCCCcchhhhh----------------------hcchhhHHHHhCCCCCCCcccccccCcccccCCCCC
Confidence 4578999999999865432210 1259999999987766679998766543322 345
Q ss_pred ceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 144 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 144 sRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
.||||||+++.+ .+.++.+....+- ...+..+|||+||+++|.
T Consensus 213 ~RiD~I~~~~~~---------------~~~~~~~~~~~~~------------~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 213 MRFDRLYWSGPL---------------DKVKFTLEGRQRI------------RSCLCFPSDHWAINATFF 255 (256)
T ss_dssp ECCEEEEEESSC---------------CEEEEEEECCSCC------------TTTCSCSCSSCEEEEEEE
T ss_pred cCeEEEEEcCCc---------------eeeEEEEEeeEec------------CCCCCCcCcccCEEEEEc
Confidence 799999999875 4556665432110 011246799999999985
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.63 E-value=2.1e-15 Score=145.55 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=89.0
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHH
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 107 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~ 107 (519)
.|.|+|+|.+..+. ..|...++.|..++++.+..+ +||||||||..+.. ..++ +|.
T Consensus 125 ~~~v~~~Hl~~~~~------~~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~----------------~~~~-~l~ 180 (257)
T 3l1w_A 125 PFLVINVHLDHISA------HARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE----------------EVHQ-LVQ 180 (257)
T ss_dssp CEEEEEEECCSSCH------HHHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS----------------HHHH-HHT
T ss_pred EEEEEEeCCCCCCH------HHHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc----------------HHHH-Hhh
Confidence 69999999987532 234566777777777433445 99999999987542 1122 342
Q ss_pred HcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCC
Q 010035 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187 (519)
Q Consensus 108 ~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~ 187 (519)
.+|.|+|+..++. ...+||..... .++.+.+.||||||+ +.+ .+.++.|+....
T Consensus 181 ---~~l~d~~~~~~~~-~~~~t~~~~~~-~~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~----- 234 (257)
T 3l1w_A 181 ---KKFQDSKNLATHY-GPRGTFQNFTY-TKPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI----- 234 (257)
T ss_dssp ---TTCEEGGGTSEEE-SCSCCBCTTCT-TCCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB-----
T ss_pred ---hhccchhhhhccc-CCCCcccCCcc-cCCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc-----
Confidence 2599999998876 35578755432 234567799999999 554 678888876311
Q ss_pred CCCCCCCCCCCCCCCCCccceEEEEeccC
Q 010035 188 NAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 188 ~~~~w~~~~~~~~~gSDH~PV~~~L~~~~ 216 (519)
....+|||+||+++|.+..
T Consensus 235 ----------~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 235 ----------DGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp ----------TTBCSSSBCCEEEEEEEC-
T ss_pred ----------CCcccCCcceEEEEEEEEe
Confidence 1257899999999998653
No 16
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.62 E-value=3e-15 Score=145.54 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=91.0
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHH
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 107 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~ 107 (519)
.|+|+|+|.+.... ..|...++.|..+++.+. .+.+||||||||..+.. ..++.|.
T Consensus 131 ~~~v~~~Hl~~~~~------~~R~~q~~~l~~~l~~~~-~~~pvIl~GDfN~~~~~----------------~~~~~l~- 186 (267)
T 3g6s_A 131 IFMAVNTHFDHVGE------EARRQSALLIIRKIKEIV-GERPAVVTGDFNVTDAS----------------DAYETIT- 186 (267)
T ss_dssp EEEEEEEECCSSCH------HHHHHHHHHHHHHHHHHT-TTSCEEEEEECSSCTTS----------------HHHHHHH-
T ss_pred EEEEEEeCCCCCCH------HHHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCCC----------------HHHHHhh-
Confidence 69999999976542 334566777777777753 47899999999986643 1233333
Q ss_pred HcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCCC
Q 010035 108 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 187 (519)
Q Consensus 108 ~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~~ 187 (519)
..|.+|.|+|+..++.....|||....... .+.+.||||||+++.+ .+..+.|+...
T Consensus 187 ~~~~~l~d~~~~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~------ 243 (267)
T 3g6s_A 187 TNEFVMKDAYKTAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEV------ 243 (267)
T ss_dssp SSSSCCEEHHHHCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCC------
T ss_pred cCCcchhhhHhhhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCC------
Confidence 221149999999874333468887654321 3567899999999875 67888887641
Q ss_pred CCCCCCCCCCCCCCCCCccceEEEEeccC
Q 010035 188 NAPRWKGGMSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 188 ~~~~w~~~~~~~~~gSDH~PV~~~L~~~~ 216 (519)
..+ ..|||+||+++|...+
T Consensus 244 ---------~~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 244 ---------PEA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp ---------SSS-CCCSBCCEEEEEEEC-
T ss_pred ---------CCC-CCCCcccEEEEEEecc
Confidence 012 6899999999997654
No 17
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.57 E-value=1.6e-14 Score=136.90 Aligned_cols=139 Identities=17% Similarity=0.116 Sum_probs=86.8
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHH
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 107 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~ 107 (519)
.|.|+|+|.+..... ...+.+.+..|...+++. ..+.+|||+||||+.+...+ ...+.
T Consensus 115 ~~~v~~~Hl~~~~~~----~~~~~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~----------------~~~~~- 172 (256)
T 4gz1_A 115 EFCLMTSHLESTREH----SAERIRQLKTVLGKMQEA-PDSTTVIFAGDTNLRDQEVI----------------KCGGL- 172 (256)
T ss_dssp EEEEEECBCCCSGGG----HHHHHHHHHHHHHHHHHS-CTTSEEEEEEECCCCHHHHH----------------HHTCS-
T ss_pred EEEEEeecccccccc----hhhhhHHHHHHhhhhhhc-cCcceEEEeCccCCCcchhh----------------hhhhc-
Confidence 699999999876432 223344555565666543 45789999999998643211 11111
Q ss_pred HcCCCeEeeecccCCCCCCCCCcCCCCCC--CccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010035 108 ESGGSFFDVFRSKHPERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 185 (519)
Q Consensus 108 ~~g~~LvD~~R~~hP~~~~~yT~ws~~~~--ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~ 185 (519)
..++.|+|+..++.....|||+..... ....+.+.||||||+++.... + .+..+++....+
T Consensus 173 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~--- 235 (256)
T 4gz1_A 173 --PDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEK--- 235 (256)
T ss_dssp --CTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSC---
T ss_pred --cchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEeccc---
Confidence 236999999998765556776554432 234567899999999976421 1 234444443210
Q ss_pred CCCCCCCCCCCCCCCCCCCccceEEEEecc
Q 010035 186 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 215 (519)
Q Consensus 186 ~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 215 (519)
+ .....+|||+||+++|++.
T Consensus 236 ---~-------~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 236 ---L-------DCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp ---C-------TTSSCSCSBCEEEEEEEEC
T ss_pred ---c-------CCCCCCCccccEEEEEEEE
Confidence 0 1135789999999999864
No 18
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.57 E-value=1.5e-14 Score=142.84 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=84.9
Q ss_pred CceEEEecCccccc-----c-------CCCC-EEEEEE----CCEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----D-------SEGR-CVITDH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWE 62 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----D-------~EGR-~Ii~~~----~~~vLiNVY~P~~~~~~--~eR~~fKl~F~~~L~~ri~ 62 (519)
.|++||+|.++... . .+.| ++.+++ ..|.|+|+|.++..... ......|..+++.|..+++
T Consensus 101 ~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 180 (301)
T 1zwx_A 101 GGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIA 180 (301)
T ss_dssp CCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 48999999986431 1 1245 455555 26999999998875321 2355667788888888887
Q ss_pred HH-HhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeE--eeecccCCCCCCCCCcCCCCC----
Q 010035 63 FL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNT---- 135 (519)
Q Consensus 63 ~l-l~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~Lv--D~~R~~hP~~~~~yT~ws~~~---- 135 (519)
.+ ...+.+||||||||+.+... .++.|+...+ +. |+|+- ..|||.....
T Consensus 181 ~~~~~~~~pvIl~GDfN~~~~~~----------------~~~~l~~~~~--~~~~d~~~g------~~~T~~~~~n~~~~ 236 (301)
T 1zwx_A 181 KKNIPKDEIIFIGGDLNVNYGTD----------------EYHDMLKLLN--VSSPANFNG------QMATWDPTTNSMLK 236 (301)
T ss_dssp HHTCCTTSEEEEEEECCCCTTSH----------------HHHHHHHHHT--BCCCTTCCT------TSCSBCTTTCHHHH
T ss_pred HhCCCCCCeEEEEeeCCCCCCcH----------------HHHHHHHHcC--CCCCccccC------CCceECCccCcccc
Confidence 75 34568999999999987531 2344454333 55 88862 2478753211
Q ss_pred CCccCCccceeeEEEEcCCc
Q 010035 136 GAEQFNYGTRIDHILCAGPC 155 (519)
Q Consensus 136 ~ar~~N~GsRIDyILvS~~l 155 (519)
..++.+.+.||||||+++.+
T Consensus 237 ~t~~~~~~~rID~I~~~~~~ 256 (301)
T 1zwx_A 237 ESYPKAAPEYLDYIFVENGH 256 (301)
T ss_dssp HHCTTSCCBCCEEEEEBTTS
T ss_pred ccCCCCCcceEeEEEEeCCC
Confidence 01223457899999999875
No 19
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.54 E-value=6.3e-14 Score=138.39 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=83.7
Q ss_pred CceEEEecCccccc-----------c-CCCC-EEEEEE----CCEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----------D-SEGR-CVITDH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWE 62 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----------D-~EGR-~Ii~~~----~~~vLiNVY~P~~~~~~--~eR~~fKl~F~~~L~~ri~ 62 (519)
.|++||+|.++... | .++| ++.+++ ..|.|+|+|.++..... ......|..+++.|..+++
T Consensus 101 ~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 180 (306)
T 2ddr_A 101 GGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIK 180 (306)
T ss_dssp CCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 49999999986431 1 2466 444554 26999999998774311 1245567788888888887
Q ss_pred HH-HhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCC----C
Q 010035 63 FL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----A 137 (519)
Q Consensus 63 ~l-l~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~----a 137 (519)
.+ ...+.+||||||||+.+...|... . . .++.++...+ +.|. .. . ...|||...... .
T Consensus 181 ~~~~~~~~pvil~GDfN~~~~~~d~~~-----s-~----~~~~l~~~~~--~~~~--~~--~-g~~~T~~~~~n~~~~~t 243 (306)
T 2ddr_A 181 NKNIPNNEYVLIGGDMNVNKINAENNN-----D-S----EYASMFKTLN--ASVP--SY--T-GHTATWDATTNSIAKYN 243 (306)
T ss_dssp HHTCCTTSCEEEEEECCCCCTTTSSCT-----T-S----HHHHHHHHHT--BCCC--EE--E-ECSCSBCTTTCHHHHHH
T ss_pred HhcCCCCCEEEEEeeCCCCcccccccC-----C-H----HHHHHHHhcC--CCCc--cc--C-CCCcccCCCCCcccccc
Confidence 75 234679999999999886655321 1 1 2344443332 5442 11 1 135888432110 1
Q ss_pred ccCCccceeeEEEEcCCcc
Q 010035 138 EQFNYGTRIDHILCAGPCL 156 (519)
Q Consensus 138 r~~N~GsRIDyILvS~~ll 156 (519)
++.+.+.||||||+++.+.
T Consensus 244 ~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 244 FPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp CTTSCCBCCEEEEEBTTSC
T ss_pred CCCCCcceeeEEEEeCCCC
Confidence 2223468999999998753
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.4e-14 Score=140.10 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh-cCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHH
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 106 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~-~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL 106 (519)
.|+|+|+|.+..+. ..|....+.|..+++.+.. .+.+||||||||..+.. ..++.|.
T Consensus 135 ~~~v~~~Hl~~~~~------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~l~ 192 (298)
T 3mpr_A 135 EFLFFNLHMDHIGK------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDAFV 192 (298)
T ss_dssp EEEEEEEECCSSCH------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHHHH
T ss_pred EEEEEEecCCCCCH------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHHHh
Confidence 69999999975431 3445667777777776532 47899999999987642 1244444
Q ss_pred HHcCCCeEeeecccCCCCCCCCCcCCCCCCCccCCccceeeEEEEcCCccccccccccccccccceeeEEEeccccccCC
Q 010035 107 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 186 (519)
Q Consensus 107 ~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~~~V~~~~I~~~~r~~~~ 186 (519)
. . +.|.|+|+..++.....+||...... ...+.||||||+++.+ .|..+.|+.... |..
T Consensus 193 ~-~-g~l~D~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~---------------~v~~~~v~~~~~-~~~ 251 (298)
T 3mpr_A 193 S-K-GVLCDSYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF---------------HVKRYGVLTDTY-RSV 251 (298)
T ss_dssp T-T-SSSEEHHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS---------------EEEEEEECCCCE-EEE
T ss_pred c-C-CcchhhHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe---------------eEEEEEEecCcc-ccC
Confidence 2 2 35999999877432235787554321 1246899999999875 567777764311 100
Q ss_pred ---------CCC-CCCCCCCCCCCCCCCccceEEEEeccC
Q 010035 187 ---------GNA-PRWKGGMSTRLEGSDHAPVYMCLGEVP 216 (519)
Q Consensus 187 ---------~~~-~~w~~~~~~~~~gSDH~PV~~~L~~~~ 216 (519)
.+. ..+.-........|||+||+++|....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 252 RENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp CC----------------CCEEEECSSSBCCEEEEEEECS
T ss_pred CCcccccCcccchhhhccChhhcccCCCCCcEEEEEecch
Confidence 000 000000001125799999999997643
No 21
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.52 E-value=8.5e-14 Score=129.52 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=90.3
Q ss_pred CCCCEE-EEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcccccCCCC
Q 010035 17 SEGRCV-ITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP 91 (519)
Q Consensus 17 ~EGR~I-i~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~~iD~~d~~~ 91 (519)
..+|.+ ++.+ ..|.|+|+|.+..... ...+..+++.|.+++++. ..+.+|||+||||+.+...+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~----~~~r~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~~~--- 164 (250)
T 4f1h_A 93 QMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ----SQERTKQLRVVLQKIKEA-PEDAIVIFAGDTNLRDAEVANVG--- 164 (250)
T ss_dssp SSCCEEEEEEEEETTEEEEEEECBCCCSGGG----HHHHHHHHHHHHHHHHHS-CTTEEEEEEEECCCCHHHHHTTT---
T ss_pred cccceEEEEEEecCCcEEEEecccccccccc----HHHHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCcchhhhh---
Confidence 455654 3333 3689999999876432 223445566666666553 35678999999998654322111
Q ss_pred CCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCC--CccCCccceeeEEEEcCCccccccccccccccc
Q 010035 92 DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 169 (519)
Q Consensus 92 ~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~--ar~~N~GsRIDyILvS~~ll~~~~~l~~~~~~~ 169 (519)
++ ...+.|+|+.+++.....++|+..... ....+.+.||||||+++.... ..
T Consensus 165 -------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~-------~~--- 218 (250)
T 4f1h_A 165 -------------GL---PAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTA-------PP--- 218 (250)
T ss_dssp -------------SS---CTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTS-------CC---
T ss_pred -------------hc---cccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccc-------cc---
Confidence 11 135899999999876556666554332 233456789999999986531 00
Q ss_pred cceeeEEEeccccccCCCCCCCCCCCCCCCCCCCCccceEEEEe
Q 010035 170 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 213 (519)
Q Consensus 170 ~~V~~~~I~~~~r~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~ 213 (519)
..+....+....+ + .....+|||+||+++|+
T Consensus 219 ~~~~~~~~~~~~~------~-------~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 219 VTPDHMALIGMEK------L-------DCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CEEEEEEEECCSC------C-------TTSSCSCSBCEEEEEEE
T ss_pred eeeeEEEEecccc------c-------CCCCCCCcccCEEEEEe
Confidence 1233333332100 0 11256899999999985
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.40 E-value=4.3e-12 Score=128.22 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=86.1
Q ss_pred CceEEEecCccccc-----------c-CCCCE-EEEEE----CCEEEEEEEeCCCCCC--ChhhHHHHHHHHHHHHHHHH
Q 010035 2 EGLEDFSKDELLKI-----------D-SEGRC-VITDH----GHFILFNVYGPRADSE--DTVRIQFKLQFFHVLQKRWE 62 (519)
Q Consensus 2 ~Gvailsr~~l~~l-----------D-~EGR~-Ii~~~----~~~vLiNVY~P~~~~~--~~eR~~fKl~F~~~L~~ri~ 62 (519)
.|++||+|.++... | .+.|. +.+++ ..|.|+|+|.++.... +......|...+..|..+++
T Consensus 120 ~G~~ilSr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 199 (317)
T 3i41_A 120 GGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVK 199 (317)
T ss_dssp CCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCccceeEECCCCCCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 49999999986432 1 24554 34443 2699999999876531 12345667788888988888
Q ss_pred HH-HhcCCcEEEeCCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCeEeeecccCCCCCCCCCcCCCCCC----C
Q 010035 63 FL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----A 137 (519)
Q Consensus 63 ~l-l~~g~~VII~GDfN~~~~~iD~~d~~~~f~~~e~R~~l~~lL~~~g~~LvD~~R~~hP~~~~~yT~ws~~~~----a 137 (519)
.. +..+.+||||||||..+.. ..++.|+... ++.|.-. .. ..|||+..... .
T Consensus 200 ~~~~~~~~pvIl~GDfN~~~~s----------------~~~~~l~~~l--~l~~~~~-~g----~~~t~d~~~n~~~~~~ 256 (317)
T 3i41_A 200 KKNIPKDETVYIGGDLNVNKGT----------------PEFKDMLKNL--NVNDVLY-AG----HNSTWDPQSNSIAKYN 256 (317)
T ss_dssp HHTCCTTSCEEEEEECCCCTTS----------------HHHHHHHHHH--TBCCCEE-EE----CSCSBCTTTCHHHHHH
T ss_pred HhccCCCCeEEEEeECCCCCCC----------------HHHHHHHHhc--CCCCccc-CC----CCcccCCCCCcccccc
Confidence 75 3457899999999998743 1233444333 3666522 11 24788765431 3
Q ss_pred ccCCccceeeEEEEcCCcc
Q 010035 138 EQFNYGTRIDHILCAGPCL 156 (519)
Q Consensus 138 r~~N~GsRIDyILvS~~ll 156 (519)
++.+.+.||||||+++..+
T Consensus 257 ~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 257 YPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp CTTCCCBCCEEEEEBTTSC
T ss_pred CCCCCCcceEEEEEeCCcC
Confidence 4556678999999999864
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=5.6e-10 Score=125.39 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=0.0
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHH-------hcCCcEEEeCCCCCCCCc
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-------CQGRRIFVVGDLNIAPAA 83 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll-------~~g~~VII~GDfN~~~~~ 83 (519)
.|.|+|+|.+........|......+++.|...++... ..+.+||||||||..++.
T Consensus 548 ~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 548 TIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp ---------------------------------------------------------------
T ss_pred eEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 58899999876532223444433333333333222110 135689999999998875
No 24
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=98.64 E-value=2.8e-07 Score=97.02 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHh-------------cCCcEEEeCCCCCCCCc
Q 010035 29 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-------------QGRRIFVVGDLNIAPAA 83 (519)
Q Consensus 29 ~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~-------------~g~~VII~GDfN~~~~~ 83 (519)
|+|+|+|.-... ++-..|+.....|.++++++.. ...+||||||||..|+.
T Consensus 197 l~V~nTHL~~~p----~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 197 LIVANAHMHWDP----EYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp EEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred EEEEEeCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 899999986642 2334566677777777776542 24689999999998874
No 25
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=98.60 E-value=3.9e-07 Score=90.86 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=47.3
Q ss_pred ceEEEecCcccc---cc-----CCCC-EEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHH-hcC---C
Q 010035 3 GLEDFSKDELLK---ID-----SEGR-CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQG---R 69 (519)
Q Consensus 3 Gvailsr~~l~~---lD-----~EGR-~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll-~~g---~ 69 (519)
|+|||+|.++.. +. .|.| +|.++++.+.+|++|+...+. .++. ...+.|..+++... ..+ .
T Consensus 97 g~AIlSR~~~~~v~~l~~~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~--~ea~----~~v~~I~~~~~~~~~~~~~~~~ 170 (261)
T 1sr4_B 97 NLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGG--SDAV----SLIRNIFTTFNSSSSPPERRVY 170 (261)
T ss_dssp CEEEEESSCCSEEEEECCCCCSSCCCCEEEEEETTEEEEEEECCTTTT--TTHH----HHHHHHHHHHHC---CGGGGGC
T ss_pred ceEEEEccchhceEEcCCCCCCCcCcceEEEEECCeEEEEeCCCCCCC--chHH----HHHHHHHHHHHhcccCCcccCC
Confidence 899999986432 22 4667 566788889999999987752 2332 22334555543320 013 6
Q ss_pred cEEEeCCCCCCC
Q 010035 70 RIFVVGDLNIAP 81 (519)
Q Consensus 70 ~VII~GDfN~~~ 81 (519)
++|||||||..+
T Consensus 171 ~~ii~GDFN~~p 182 (261)
T 1sr4_B 171 SWMVVGDFNRAP 182 (261)
T ss_dssp EEEEEEECSSCH
T ss_pred cEEEEeeCCCCh
Confidence 999999999863
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=98.54 E-value=2.3e-07 Score=92.24 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=48.9
Q ss_pred ceEEEecCcccc---c---cCCCC-EEEEEECCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcC-----Cc
Q 010035 3 GLEDFSKDELLK---I---DSEGR-CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-----RR 70 (519)
Q Consensus 3 Gvailsr~~l~~---l---D~EGR-~Ii~~~~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g-----~~ 70 (519)
|+||+||.+..+ + ....| .|-++++.++++|+|+-..+. .+|.+ ..+.+.+++... .. .+
T Consensus 108 nlAIlSr~~adev~vLp~~~~~~Rp~lgiri~~~~ff~tHa~a~~g--~da~a----~v~~I~~~~~~~--~~~~~~~~p 179 (262)
T 2f1n_A 108 NLALVSNRRADEVFVLSPVRQGGRPLLGIRIGNDAFFTAHAIAMRN--NDAPA----LVEEVYNFFRDS--RDPVHQALN 179 (262)
T ss_dssp CEEEEESSCCSEEEEECCSSTTCCCEEEEEETTEEEEEEECCSSSS--CSHHH----HHHHHHHHHHTC--SSHHHHTCE
T ss_pred eeEEEEcccccceEECCCCCCCCCceEEEEECCEEEEEEEecCCCC--ccHHH----HHHHHHHHHhcC--cccccCCCc
Confidence 899999986432 2 12356 566888999999999987643 34432 244444444331 22 49
Q ss_pred EEEeCCCCCCCCc
Q 010035 71 IFVVGDLNIAPAA 83 (519)
Q Consensus 71 VII~GDfN~~~~~ 83 (519)
+||+||||..|+.
T Consensus 180 wii~GDFNr~P~s 192 (262)
T 2f1n_A 180 WMILGDFNREPAD 192 (262)
T ss_dssp EEEEEECSSCHHH
T ss_pred EEEEecCCCCCcc
Confidence 9999999998764
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.33 E-value=1.5e-07 Score=91.53 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHH--hcCCcEEEeCCCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPA 82 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll--~~g~~VII~GDfN~~~~ 82 (519)
.|+|+|+|.+..+. .+ ..+.|...++.+. ....+||||||||..+.
T Consensus 127 ~~~vi~~Hl~~~~~---~~------q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 127 EFAIVALHSAPSDA---VA------EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp EEEEEECCCCGGGH---HH------HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred eEEEEEecCCCCCc---HH------HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 69999999975431 11 1334444443332 24679999999998654
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.09 E-value=2.2e-06 Score=85.72 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=32.8
Q ss_pred EEEEEE----CCEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC
Q 010035 21 CVITDH----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 82 (519)
Q Consensus 21 ~Ii~~~----~~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~ll~~g~~VII~GDfN~~~~ 82 (519)
++.+.+ ..|.++|+|..+......+|.. -++.|.+++.. +....+|||+||||.-.+
T Consensus 117 av~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~----~~~~I~~~~~~-~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 117 GIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKY----AYDTRLDYSKK-DDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp EEEEEEEETTEEEEEEEEECCTTCCCTTSSSS----SCCGGGCTTSS-SSCCSEEEEEEECSCCBC
T ss_pred eEEEEEEECCEEEEEEEECCCCCCchHHHHHH----HHHHHHHhhhc-cCccceEEEecccccccC
Confidence 455554 2699999999987432233321 22223333222 134568999999997543
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=97.87 E-value=4.9e-05 Score=78.56 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=30.2
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHH----HHhcCCcEEEeCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----LLCQGRRIFVVGDLNIA 80 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~----ll~~g~~VII~GDfN~~ 80 (519)
.|.+||+|..++...-.+ |..-|..|...+.- .+....+|||+||||.-
T Consensus 159 ~l~fvn~HLaa~~~~~~~----R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyR 211 (347)
T 1i9z_A 159 GLCFITSHLAAGYTNYDE----RDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYR 211 (347)
T ss_dssp EEEEEEEECCCCSSCHHH----HHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCC
T ss_pred EEEEEEecCCCCCccHHH----HHHHHHHHHHhhccCcccccccCccEEEecccccc
Confidence 699999999887542122 33444444443320 01245789999999953
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=97.70 E-value=0.00097 Score=69.16 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=25.2
Q ss_pred CCCCCccceEEEEeccCCCCCCCCCccccccc
Q 010035 200 LEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 231 (519)
Q Consensus 200 ~~gSDH~PV~~~L~~~~~~~~~~~p~l~~~~l 231 (519)
+..|||-||++.|.... -+.....+|++.++
T Consensus 306 ~~~SDHrPV~a~f~v~v-~~~~~~ipl~~~~f 336 (357)
T 2xsw_A 306 IKTSDHRPVYGLFRVKV-RPGRDNIPLAAGKF 336 (357)
T ss_dssp CCSSSSCCEEEEEEEEC-CCCCSCSCBCSSCC
T ss_pred ccCCCcCCceeEEEEEE-ecCCcccccccccc
Confidence 68899999999998765 34456688999987
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=95.49 E-value=0.11 Score=52.81 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=31.1
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHH----------HHhcCCcEEEeCCCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----------LLCQGRRIFVVGDLNIAPA 82 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~~----------ll~~g~~VII~GDfN~~~~ 82 (519)
.|.+||.|..++.. ..+.|..=|..|..++.- .+.....||++||||--.+
T Consensus 136 s~cFVnsHLaA~~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 136 SICVVNSHLAAHIE----EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp EEEEEEEECCCSGG----GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred EEEEEeeccCCCch----HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 69999999987643 234444445555444321 0112456999999997543
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=94.34 E-value=0.31 Score=49.59 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=28.2
Q ss_pred CEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHH----HH-----HhcCCcEEEeCCCCCC
Q 010035 28 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE----FL-----LCQGRRIFVVGDLNIA 80 (519)
Q Consensus 28 ~~vLiNVY~P~~~~~~~eR~~fKl~F~~~L~~ri~----~l-----l~~g~~VII~GDfN~~ 80 (519)
.|.+||.|..++... ...|..=|..|.+++. .+ ...-.+||++||||--
T Consensus 138 s~~FVn~HLaAg~~~----~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 138 SFGFVNCHLTSGNEK----TARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEEEEEEECCCSTTC----HHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCC
T ss_pred EEEEEEeccccCchH----HHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCC
Confidence 699999999886542 2223333444433321 00 0012479999999974
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=66.28 E-value=2.5 Score=29.98 Aligned_cols=35 Identities=31% Similarity=0.874 Sum_probs=25.5
Q ss_pred CCCcCCCCCCCcccccccCCCCCCCcceeecCCCCCCCCCCCCCCCcee
Q 010035 462 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 510 (519)
Q Consensus 462 ~~P~C~~h~~~~~~~~v~K~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~ 510 (519)
..|.|.- +|.|.+| .|+-.||. |.=|+| ..||||+
T Consensus 3 ~~P~Cd~-GeqCAvR----kG~Rigkl---C~C~rg------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCDA-GEQCAVR----KGARIGKL---CDCPRG------TSCNSFL 37 (41)
T ss_dssp CCCBCCS-SSCSEEE----CSSSEEEC---CBCCTT------CCBCTTT
T ss_pred cCCcCCc-cchhhhh----cccccchh---cCCCCC------Ccchhhh
Confidence 4799995 8999754 48888874 444444 7899996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=25.19 E-value=16 Score=23.25 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.6
Q ss_pred CccccccccccC
Q 010035 354 GQLSLKSFFHKR 365 (519)
Q Consensus 354 ~Q~sL~sFF~~~ 365 (519)
|-.+|-+||++=
T Consensus 8 g~~TLesFFK~L 19 (26)
T 2zvk_U 8 GMQTLESFFKPL 19 (26)
T ss_pred ccccHHHHhccC
Confidence 445999999984
Done!