Query 010037
Match_columns 519
No_of_seqs 682 out of 3301
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 4.7E-54 1E-58 441.5 27.8 452 1-506 1-487 (712)
2 KOG0271 Notchless-like WD40 re 100.0 3.1E-35 6.7E-40 277.1 21.1 259 225-506 105-445 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.2E-34 6.9E-39 270.3 22.6 260 229-498 151-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-34 4.1E-39 275.2 18.4 243 236-506 176-424 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-34 1.2E-38 272.1 17.5 244 228-498 210-458 (459)
6 KOG0263 Transcription initiati 100.0 4.6E-33 1E-37 284.6 22.6 246 235-501 378-650 (707)
7 KOG0273 Beta-transducin family 100.0 3.1E-31 6.7E-36 256.3 27.4 252 236-516 236-499 (524)
8 KOG0286 G-protein beta subunit 100.0 5.2E-30 1.1E-34 234.5 26.4 250 226-504 46-307 (343)
9 KOG0279 G protein beta subunit 100.0 4.7E-30 1E-34 233.5 25.0 247 227-500 55-313 (315)
10 KOG0279 G protein beta subunit 100.0 9E-30 1.9E-34 231.7 24.0 254 228-506 8-268 (315)
11 KOG0286 G-protein beta subunit 100.0 1.4E-28 3.1E-33 225.1 24.1 283 167-498 53-343 (343)
12 KOG0645 WD40 repeat protein [G 100.0 5.8E-29 1.3E-33 225.5 21.1 261 146-500 38-311 (312)
13 KOG0315 G-protein beta subunit 100.0 2.6E-28 5.7E-33 218.7 23.6 251 230-507 35-295 (311)
14 KOG0291 WD40-repeat-containing 100.0 2.8E-28 6E-33 247.4 25.5 250 231-506 346-618 (893)
15 KOG0295 WD40 repeat-containing 100.0 1.7E-28 3.6E-33 230.7 20.5 250 231-507 104-371 (406)
16 KOG0285 Pleiotropic regulator 100.0 5.1E-28 1.1E-32 226.7 19.7 258 220-507 133-396 (460)
17 KOG0284 Polyadenylation factor 100.0 1E-28 2.2E-33 235.1 14.7 237 236-500 97-337 (464)
18 KOG0284 Polyadenylation factor 100.0 1E-28 2.3E-33 235.0 13.7 241 231-499 134-379 (464)
19 KOG0295 WD40 repeat-containing 100.0 2.8E-27 6.1E-32 222.5 20.1 243 230-499 145-405 (406)
20 KOG0645 WD40 repeat protein [G 100.0 1.3E-26 2.7E-31 210.4 22.4 208 228-500 7-225 (312)
21 KOG0266 WD40 repeat-containing 100.0 1.6E-26 3.4E-31 241.3 26.5 246 235-506 159-415 (456)
22 KOG0265 U5 snRNP-specific prot 100.0 2.2E-26 4.8E-31 211.6 23.8 259 226-497 38-335 (338)
23 KOG0281 Beta-TrCP (transducin 100.0 3.9E-28 8.4E-33 226.6 11.1 226 243-502 203-430 (499)
24 KOG0318 WD40 repeat stress pro 99.9 1.9E-25 4E-30 219.0 28.7 245 231-502 186-562 (603)
25 KOG0282 mRNA splicing factor [ 99.9 2E-27 4.4E-32 230.8 14.7 244 228-498 207-503 (503)
26 KOG0276 Vesicle coat complex C 99.9 1.6E-26 3.4E-31 230.3 21.2 247 234-506 12-263 (794)
27 KOG0273 Beta-transducin family 99.9 2E-26 4.4E-31 223.0 21.3 209 229-500 270-523 (524)
28 KOG0263 Transcription initiati 99.9 2.2E-26 4.7E-31 235.9 21.1 204 230-461 446-651 (707)
29 cd00200 WD40 WD40 domain, foun 99.9 3.6E-25 7.8E-30 214.3 28.9 248 230-505 4-254 (289)
30 KOG0296 Angio-associated migra 99.9 8.8E-26 1.9E-30 212.6 22.7 252 227-506 56-362 (399)
31 PTZ00421 coronin; Provisional 99.9 2.1E-25 4.5E-30 232.5 27.4 214 231-507 71-297 (493)
32 KOG0291 WD40-repeat-containing 99.9 1.6E-25 3.5E-30 227.5 25.6 239 237-503 309-553 (893)
33 KOG0319 WD40-repeat-containing 99.9 7.9E-26 1.7E-30 229.5 21.3 246 231-500 361-619 (775)
34 KOG0292 Vesicle coat complex C 99.9 1.1E-25 2.4E-30 231.7 22.3 256 236-519 10-301 (1202)
35 KOG0316 Conserved WD40 repeat- 99.9 2.6E-25 5.6E-30 198.0 21.2 252 227-506 9-263 (307)
36 KOG0266 WD40 repeat-containing 99.9 4.3E-25 9.2E-30 230.5 25.2 248 228-500 196-454 (456)
37 KOG0275 Conserved WD40 repeat- 99.9 1.6E-25 3.4E-30 207.5 18.1 250 237-507 215-474 (508)
38 KOG0313 Microtubule binding pr 99.9 5.9E-25 1.3E-29 207.9 21.9 241 247-519 115-388 (423)
39 KOG0293 WD40 repeat-containing 99.9 2.3E-25 4.9E-30 212.4 19.1 268 230-501 219-514 (519)
40 cd00200 WD40 WD40 domain, foun 99.9 2.8E-24 6.1E-29 208.0 27.4 237 234-498 50-289 (289)
41 PLN00181 protein SPA1-RELATED; 99.9 3.8E-24 8.3E-29 239.1 31.4 264 231-499 479-792 (793)
42 KOG0315 G-protein beta subunit 99.9 5.8E-25 1.3E-29 197.3 19.2 187 248-503 11-200 (311)
43 KOG0646 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 209.2 23.9 276 143-507 16-314 (476)
44 KOG0643 Translation initiation 99.9 2.4E-24 5.2E-29 195.2 22.6 252 230-501 5-318 (327)
45 KOG0319 WD40-repeat-containing 99.9 7.8E-25 1.7E-29 222.3 21.1 248 235-506 323-583 (775)
46 KOG1407 WD40 repeat protein [F 99.9 1.6E-24 3.4E-29 195.8 20.0 263 231-500 16-311 (313)
47 KOG0276 Vesicle coat complex C 99.9 9.3E-25 2E-29 217.7 19.5 234 236-496 56-295 (794)
48 KOG0285 Pleiotropic regulator 99.9 7.1E-25 1.5E-29 205.7 17.0 209 277-507 144-355 (460)
49 KOG0640 mRNA cleavage stimulat 99.9 1.1E-24 2.3E-29 201.0 16.9 217 231-508 108-343 (430)
50 KOG0318 WD40 repeat stress pro 99.9 2.5E-23 5.4E-28 204.1 26.9 246 237-507 61-357 (603)
51 PTZ00421 coronin; Provisional 99.9 2.3E-23 5E-28 217.2 27.7 208 239-502 24-247 (493)
52 KOG0641 WD40 repeat protein [G 99.9 8.8E-23 1.9E-27 180.7 26.9 250 236-502 33-305 (350)
53 KOG0310 Conserved WD40 repeat- 99.9 3E-24 6.4E-29 209.2 19.3 202 234-506 67-274 (487)
54 PTZ00420 coronin; Provisional 99.9 3.2E-23 6.9E-28 217.3 28.0 216 229-508 68-301 (568)
55 KOG0283 WD40 repeat-containing 99.9 2.6E-24 5.7E-29 222.4 19.2 208 233-506 265-538 (712)
56 KOG0296 Angio-associated migra 99.9 9.4E-24 2E-28 198.9 21.1 262 230-500 101-398 (399)
57 KOG0278 Serine/threonine kinas 99.9 3.5E-24 7.5E-29 192.3 15.3 202 234-505 99-302 (334)
58 KOG0265 U5 snRNP-specific prot 99.9 1.7E-23 3.7E-28 192.6 20.1 203 278-501 41-247 (338)
59 KOG0292 Vesicle coat complex C 99.9 3E-23 6.5E-28 213.9 23.4 256 220-500 32-321 (1202)
60 PTZ00420 coronin; Provisional 99.9 1.7E-22 3.8E-27 211.8 28.3 187 253-501 50-249 (568)
61 KOG0277 Peroxisomal targeting 99.9 8.9E-24 1.9E-28 190.3 15.4 239 236-499 61-308 (311)
62 KOG0306 WD40-repeat-containing 99.9 3.3E-23 7.2E-28 210.6 20.5 237 240-504 417-668 (888)
63 KOG0316 Conserved WD40 repeat- 99.9 3.9E-23 8.5E-28 184.1 18.1 206 278-507 11-220 (307)
64 KOG0274 Cdc4 and related F-box 99.9 1.2E-22 2.7E-27 212.1 23.6 239 237-510 210-451 (537)
65 KOG0264 Nucleosome remodeling 99.9 6.6E-23 1.4E-27 198.5 19.3 216 226-501 168-405 (422)
66 KOG0305 Anaphase promoting com 99.9 1.8E-22 3.9E-27 203.9 23.2 238 235-502 217-463 (484)
67 KOG0268 Sof1-like rRNA process 99.9 2E-23 4.3E-28 196.5 14.3 249 228-510 59-312 (433)
68 KOG0281 Beta-TrCP (transducin 99.9 6.7E-24 1.5E-28 198.3 10.6 251 215-504 213-481 (499)
69 KOG1332 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 182.3 17.9 258 231-507 7-294 (299)
70 KOG0772 Uncharacterized conser 99.9 4.8E-23 1E-27 201.5 16.2 224 226-502 158-396 (641)
71 KOG0299 U3 snoRNP-associated p 99.9 2.7E-22 5.9E-27 194.2 20.9 253 228-502 135-412 (479)
72 KOG0288 WD40 repeat protein Ti 99.9 1.3E-22 2.9E-27 193.8 17.1 239 228-498 212-459 (459)
73 KOG0264 Nucleosome remodeling 99.9 2.8E-22 6.1E-27 194.2 19.4 231 234-519 123-372 (422)
74 KOG0289 mRNA splicing factor [ 99.9 1.1E-22 2.3E-27 195.5 16.3 194 241-504 225-423 (506)
75 KOG0282 mRNA splicing factor [ 99.9 4E-23 8.6E-28 201.1 12.9 170 276-506 206-378 (503)
76 KOG0274 Cdc4 and related F-box 99.9 4.4E-22 9.6E-27 208.0 20.9 240 231-506 245-488 (537)
77 PLN00181 protein SPA1-RELATED; 99.9 2.5E-21 5.4E-26 216.5 28.4 223 256-501 457-691 (793)
78 KOG0294 WD40 repeat-containing 99.9 3.4E-21 7.4E-26 178.6 23.0 232 249-502 3-283 (362)
79 KOG0313 Microtubule binding pr 99.9 1.1E-21 2.3E-26 186.0 20.0 257 231-500 140-418 (423)
80 KOG0275 Conserved WD40 repeat- 99.9 1.7E-23 3.8E-28 193.9 7.6 170 282-506 211-384 (508)
81 KOG0308 Conserved WD40 repeat- 99.9 3.5E-22 7.5E-27 200.5 17.4 242 244-502 34-287 (735)
82 KOG0973 Histone transcription 99.9 1.5E-21 3.2E-26 206.9 21.4 262 227-504 61-359 (942)
83 KOG0973 Histone transcription 99.9 1.3E-21 2.8E-26 207.3 19.8 208 237-489 15-238 (942)
84 KOG0288 WD40 repeat protein Ti 99.9 4.4E-22 9.5E-27 190.3 14.6 250 230-507 170-424 (459)
85 KOG0299 U3 snoRNP-associated p 99.9 4.2E-21 9.1E-26 186.0 20.7 229 233-490 200-445 (479)
86 KOG0277 Peroxisomal targeting 99.9 3.5E-21 7.6E-26 173.6 18.8 192 255-519 36-233 (311)
87 KOG0641 WD40 repeat protein [G 99.9 3.5E-20 7.5E-25 164.3 24.4 249 232-500 86-349 (350)
88 KOG1408 WD40 repeat protein [F 99.9 4E-21 8.7E-26 194.2 20.1 261 223-504 447-717 (1080)
89 KOG0647 mRNA export protein (c 99.9 1.3E-20 2.8E-25 173.9 20.6 197 235-502 27-230 (347)
90 KOG0269 WD40 repeat-containing 99.9 9E-22 2E-26 201.1 14.2 238 241-500 93-340 (839)
91 KOG0305 Anaphase promoting com 99.9 1.1E-20 2.5E-25 190.9 21.9 235 241-505 183-424 (484)
92 KOG0310 Conserved WD40 repeat- 99.9 5.8E-21 1.2E-25 186.4 17.6 202 234-505 25-231 (487)
93 KOG0300 WD40 repeat-containing 99.9 4.4E-21 9.4E-26 177.7 15.9 245 228-503 141-389 (481)
94 KOG0267 Microtubule severing p 99.9 3.1E-22 6.7E-27 203.0 8.4 207 230-506 23-232 (825)
95 KOG0640 mRNA cleavage stimulat 99.9 6.6E-21 1.4E-25 176.1 16.4 208 227-499 164-425 (430)
96 KOG1446 Histone H3 (Lys4) meth 99.9 2.3E-19 5E-24 167.0 25.0 213 276-507 6-269 (311)
97 KOG1446 Histone H3 (Lys4) meth 99.9 2.3E-19 5E-24 167.0 24.3 244 235-501 14-304 (311)
98 KOG0289 mRNA splicing factor [ 99.9 8.7E-20 1.9E-24 175.6 22.1 244 228-499 254-505 (506)
99 KOG0302 Ribosome Assembly prot 99.9 1.8E-20 4E-25 177.4 16.8 195 246-500 164-378 (440)
100 KOG0301 Phospholipase A2-activ 99.9 7.6E-20 1.6E-24 185.1 22.3 224 241-501 64-289 (745)
101 KOG2096 WD40 repeat protein [G 99.8 1.5E-19 3.2E-24 167.9 21.4 250 229-498 80-400 (420)
102 KOG0302 Ribosome Assembly prot 99.8 3.1E-20 6.8E-25 175.8 16.7 211 223-497 199-436 (440)
103 KOG0306 WD40-repeat-containing 99.8 1.3E-19 2.9E-24 184.6 22.1 248 231-505 369-627 (888)
104 KOG1273 WD40 repeat protein [G 99.8 1.6E-19 3.5E-24 167.4 20.7 241 240-510 28-290 (405)
105 KOG0308 Conserved WD40 repeat- 99.8 3.1E-20 6.8E-25 186.6 17.2 256 228-500 66-327 (735)
106 KOG4283 Transcription-coupled 99.8 5.3E-20 1.2E-24 169.1 17.3 210 232-504 40-280 (397)
107 KOG2445 Nuclear pore complex c 99.8 5.6E-19 1.2E-23 163.5 24.0 253 232-502 10-320 (361)
108 KOG0301 Phospholipase A2-activ 99.8 6.7E-20 1.5E-24 185.5 19.2 237 231-500 10-249 (745)
109 KOG2096 WD40 repeat protein [G 99.8 1.9E-19 4.1E-24 167.1 18.8 213 276-500 78-308 (420)
110 KOG0267 Microtubule severing p 99.8 3.9E-21 8.4E-26 195.1 8.1 192 230-491 65-259 (825)
111 KOG1274 WD40 repeat protein [G 99.8 7.1E-19 1.5E-23 183.3 24.5 240 233-501 11-263 (933)
112 KOG0300 WD40 repeat-containing 99.8 1.5E-19 3.1E-24 167.6 17.2 256 227-502 182-478 (481)
113 KOG0643 Translation initiation 99.8 2.4E-19 5.2E-24 162.9 18.1 207 279-507 5-227 (327)
114 KOG4328 WD40 protein [Function 99.8 4.9E-19 1.1E-23 171.6 19.9 253 230-505 181-455 (498)
115 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-19 3.8E-24 178.9 16.3 238 215-506 275-567 (577)
116 KOG0269 WD40 repeat-containing 99.8 1E-19 2.3E-24 186.1 14.8 214 231-504 34-254 (839)
117 KOG1036 Mitotic spindle checkp 99.8 1.1E-18 2.4E-23 161.7 20.1 235 235-503 13-265 (323)
118 KOG0772 Uncharacterized conser 99.8 4.9E-19 1.1E-23 173.6 18.4 242 236-498 215-485 (641)
119 KOG0270 WD40 repeat-containing 99.8 4.1E-19 8.9E-24 171.7 17.0 194 246-501 191-405 (463)
120 KOG0268 Sof1-like rRNA process 99.8 1.4E-19 3E-24 170.7 13.3 239 229-501 103-346 (433)
121 KOG0278 Serine/threonine kinas 99.8 9.4E-20 2E-24 164.0 11.3 244 234-506 13-260 (334)
122 KOG0293 WD40 repeat-containing 99.8 2.6E-19 5.6E-24 171.3 14.7 170 273-502 213-386 (519)
123 KOG2106 Uncharacterized conser 99.8 1.3E-17 2.8E-22 163.4 26.6 263 229-502 194-479 (626)
124 KOG0639 Transducin-like enhanc 99.8 3.4E-19 7.4E-24 174.0 15.5 245 236-502 420-665 (705)
125 KOG4378 Nuclear protein COP1 [ 99.8 4.9E-19 1.1E-23 172.8 16.3 195 240-502 84-282 (673)
126 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 168.4 18.6 256 176-505 188-454 (463)
127 KOG1407 WD40 repeat protein [F 99.8 1.6E-18 3.5E-23 157.1 18.1 241 278-519 14-281 (313)
128 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.6E-23 159.8 17.5 279 142-501 38-362 (370)
129 KOG0307 Vesicle coat complex C 99.8 5.8E-19 1.3E-23 188.2 14.1 247 237-503 66-330 (1049)
130 KOG2055 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 158.9 23.0 241 235-500 213-512 (514)
131 KOG0303 Actin-binding protein 99.8 5.8E-18 1.3E-22 161.4 16.6 196 247-501 44-250 (472)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.5E-16 5.4E-21 155.3 29.1 238 238-505 33-284 (300)
133 KOG0294 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 154.6 18.6 220 228-478 76-305 (362)
134 KOG1539 WD repeat protein [Gen 99.8 1.6E-17 3.4E-22 171.6 20.5 266 235-507 244-613 (910)
135 KOG1274 WD40 repeat protein [G 99.8 1.9E-17 4.2E-22 172.7 20.3 202 231-497 92-297 (933)
136 KOG2048 WD40 repeat protein [G 99.8 1.1E-16 2.5E-21 162.0 25.0 243 235-504 25-279 (691)
137 KOG1539 WD repeat protein [Gen 99.8 9.8E-18 2.1E-22 173.0 17.5 194 239-500 452-648 (910)
138 KOG0647 mRNA export protein (c 99.8 3.6E-17 7.9E-22 151.2 19.4 222 234-489 71-312 (347)
139 KOG1036 Mitotic spindle checkp 99.8 1.1E-16 2.5E-21 148.5 21.4 223 237-490 56-294 (323)
140 KOG0639 Transducin-like enhanc 99.8 2.1E-17 4.4E-22 161.7 16.2 235 238-499 468-703 (705)
141 KOG1332 Vesicle coat complex C 99.8 2.2E-17 4.9E-22 148.4 14.9 224 225-459 46-286 (299)
142 KOG1063 RNA polymerase II elon 99.7 2.1E-17 4.5E-22 167.5 15.9 211 225-500 515-763 (764)
143 KOG1063 RNA polymerase II elon 99.7 1.5E-16 3.3E-21 161.3 21.1 255 240-502 321-650 (764)
144 KOG0303 Actin-binding protein 99.7 2.2E-16 4.8E-21 150.7 19.8 210 230-503 76-297 (472)
145 KOG4283 Transcription-coupled 99.7 5.8E-17 1.3E-21 149.2 14.8 174 281-501 40-220 (397)
146 KOG1587 Cytoplasmic dynein int 99.7 2.2E-16 4.7E-21 164.3 20.6 250 236-502 243-518 (555)
147 KOG0650 WD40 repeat nucleolar 99.7 3.3E-16 7.1E-21 156.5 20.0 219 278-500 394-637 (733)
148 KOG1408 WD40 repeat protein [F 99.7 1.8E-16 3.9E-21 160.9 18.3 241 249-506 394-677 (1080)
149 KOG1273 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 147.9 16.3 152 287-500 26-226 (405)
150 KOG2106 Uncharacterized conser 99.7 4.8E-15 1E-19 145.6 27.4 246 237-500 248-521 (626)
151 KOG1538 Uncharacterized conser 99.7 3E-16 6.4E-21 158.2 19.0 254 237-501 14-294 (1081)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2E-15 4.3E-20 148.8 24.5 187 247-505 1-192 (300)
153 KOG1034 Transcriptional repres 99.7 9.1E-17 2E-21 150.1 13.7 188 246-500 104-383 (385)
154 KOG1009 Chromatin assembly com 99.7 4.1E-17 9E-22 156.3 10.9 207 236-489 14-249 (434)
155 KOG1188 WD40 repeat protein [G 99.7 4.2E-16 9.2E-21 146.5 17.2 189 248-503 41-245 (376)
156 KOG0646 WD40 repeat protein [G 99.7 6.3E-16 1.4E-20 150.6 18.3 203 248-519 51-274 (476)
157 KOG0649 WD40 repeat protein [G 99.7 7.3E-15 1.6E-19 132.2 22.9 233 240-501 15-275 (325)
158 KOG2445 Nuclear pore complex c 99.7 1.2E-15 2.7E-20 141.5 18.0 248 180-459 25-318 (361)
159 KOG0321 WD40 repeat-containing 99.7 4.9E-16 1.1E-20 156.4 16.4 263 231-502 96-393 (720)
160 KOG0322 G-protein beta subunit 99.7 1.4E-15 3E-20 138.4 16.9 250 230-499 9-322 (323)
161 KOG0321 WD40 repeat-containing 99.7 1.5E-15 3.2E-20 153.0 17.9 241 246-503 63-350 (720)
162 KOG1524 WD40 repeat-containing 99.7 9E-16 1.9E-20 151.5 15.6 209 248-499 76-285 (737)
163 KOG0650 WD40 repeat nucleolar 99.7 3.5E-15 7.7E-20 149.2 17.8 274 231-519 396-700 (733)
164 KOG4328 WD40 protein [Function 99.7 2.3E-15 4.9E-20 146.4 16.0 208 276-500 178-399 (498)
165 KOG1009 Chromatin assembly com 99.7 8.5E-15 1.8E-19 140.6 19.5 276 228-505 58-377 (434)
166 KOG2055 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 140.9 20.3 200 284-501 213-418 (514)
167 KOG2919 Guanine nucleotide-bin 99.6 2.6E-14 5.7E-19 133.5 21.1 243 241-501 55-328 (406)
168 KOG1445 Tumor-specific antigen 99.6 1.4E-15 3E-20 152.6 13.2 202 242-502 586-800 (1012)
169 KOG1310 WD40 repeat protein [G 99.6 2E-15 4.3E-20 149.5 13.8 226 220-503 32-306 (758)
170 KOG1007 WD repeat protein TSSC 99.6 5.9E-15 1.3E-19 135.8 15.5 209 235-501 63-290 (370)
171 KOG0644 Uncharacterized conser 99.6 6.1E-16 1.3E-20 159.6 9.7 248 229-504 184-472 (1113)
172 KOG1445 Tumor-specific antigen 99.6 2.7E-15 5.9E-20 150.6 13.6 199 239-500 631-844 (1012)
173 KOG0771 Prolactin regulatory e 99.6 1E-14 2.2E-19 141.0 16.3 201 239-460 148-355 (398)
174 KOG1523 Actin-related protein 99.6 1.6E-14 3.6E-19 134.8 16.5 203 236-502 11-238 (361)
175 KOG0307 Vesicle coat complex C 99.6 2.9E-15 6.2E-20 160.3 12.7 211 232-462 113-330 (1049)
176 KOG0290 Conserved WD40 repeat- 99.6 1.4E-14 3E-19 133.6 15.2 203 238-501 99-319 (364)
177 KOG1034 Transcriptional repres 99.6 2.9E-14 6.4E-19 133.5 16.6 157 238-459 41-211 (385)
178 KOG2048 WD40 repeat protein [G 99.6 2.4E-13 5.2E-18 138.2 24.2 202 283-507 24-240 (691)
179 KOG4378 Nuclear protein COP1 [ 99.6 2.7E-14 5.9E-19 140.0 16.7 184 230-482 116-305 (673)
180 KOG0642 Cell-cycle nuclear pro 99.6 1.4E-14 3E-19 144.4 14.8 219 225-464 334-566 (577)
181 KOG2919 Guanine nucleotide-bin 99.6 2.2E-14 4.8E-19 134.0 14.6 223 243-491 119-361 (406)
182 COG2319 FOG: WD40 repeat [Gene 99.6 1.5E-12 3.2E-17 132.6 29.3 249 230-506 60-320 (466)
183 KOG2394 WD40 protein DMR-N9 [G 99.6 6E-14 1.3E-18 139.0 16.9 226 243-506 181-458 (636)
184 PF08662 eIF2A: Eukaryotic tra 99.6 2.2E-13 4.7E-18 125.6 19.5 118 388-509 59-188 (194)
185 KOG1240 Protein kinase contain 99.5 1.5E-12 3.2E-17 140.2 23.6 262 236-505 1049-1339(1431)
186 COG2319 FOG: WD40 repeat [Gene 99.5 9.1E-12 2E-16 126.7 28.5 233 244-503 119-362 (466)
187 KOG4227 WD40 repeat protein [G 99.5 5.2E-13 1.1E-17 127.5 17.5 265 230-500 51-387 (609)
188 KOG1310 WD40 repeat protein [G 99.5 2.9E-14 6.4E-19 141.3 8.7 166 274-500 40-231 (758)
189 KOG1517 Guanine nucleotide bin 99.5 4.8E-13 1E-17 141.7 18.2 242 246-504 1122-1385(1387)
190 KOG1523 Actin-related protein 99.5 3.3E-13 7.2E-18 126.2 14.9 157 283-499 9-175 (361)
191 KOG2110 Uncharacterized conser 99.5 2.7E-11 5.9E-16 115.6 28.0 239 241-507 52-340 (391)
192 KOG1188 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 128.0 14.0 204 232-500 67-346 (376)
193 KOG0290 Conserved WD40 repeat- 99.5 6.2E-13 1.3E-17 122.8 16.1 193 241-455 156-361 (364)
194 PRK01742 tolB translocation pr 99.5 1.2E-12 2.7E-17 136.2 20.7 192 232-499 200-400 (429)
195 KOG4227 WD40 repeat protein [G 99.5 2.1E-13 4.6E-18 130.1 13.4 170 276-502 48-227 (609)
196 KOG1517 Guanine nucleotide bin 99.5 2.9E-12 6.2E-17 136.0 21.5 256 240-508 1069-1341(1387)
197 KOG0771 Prolactin regulatory e 99.5 3.2E-13 6.9E-18 130.7 12.7 162 288-513 148-324 (398)
198 PF08662 eIF2A: Eukaryotic tra 99.5 6.5E-12 1.4E-16 115.8 19.7 148 241-461 11-181 (194)
199 KOG1963 WD40 repeat protein [G 99.5 1.2E-11 2.7E-16 129.6 23.3 254 241-504 22-326 (792)
200 PRK11028 6-phosphogluconolacto 99.4 7.6E-11 1.6E-15 118.6 27.9 246 238-505 37-311 (330)
201 KOG2110 Uncharacterized conser 99.4 2.3E-11 5E-16 116.1 22.3 232 240-503 10-251 (391)
202 KOG1538 Uncharacterized conser 99.4 2.7E-11 5.8E-16 122.9 23.8 209 229-458 47-292 (1081)
203 KOG1963 WD40 repeat protein [G 99.4 1.9E-11 4.1E-16 128.2 23.2 257 238-501 208-539 (792)
204 KOG3881 Uncharacterized conser 99.4 8E-12 1.7E-16 119.9 18.2 202 247-506 115-326 (412)
205 PRK03629 tolB translocation pr 99.4 3E-11 6.5E-16 125.7 24.2 200 236-508 199-414 (429)
206 PRK05137 tolB translocation pr 99.4 2.9E-11 6.4E-16 126.2 24.1 205 231-508 197-420 (435)
207 PRK04922 tolB translocation pr 99.4 3.2E-11 7E-16 125.8 23.6 202 234-508 202-419 (433)
208 KOG1587 Cytoplasmic dynein int 99.4 1.2E-11 2.6E-16 129.2 19.6 225 257-503 222-475 (555)
209 KOG2111 Uncharacterized conser 99.4 3.5E-10 7.6E-15 106.2 26.8 212 257-495 75-317 (346)
210 KOG0649 WD40 repeat protein [G 99.4 8.4E-11 1.8E-15 106.3 19.5 197 236-497 115-313 (325)
211 KOG0644 Uncharacterized conser 99.4 1.6E-13 3.5E-18 142.0 2.4 120 273-459 179-300 (1113)
212 KOG2139 WD40 repeat protein [G 99.4 3.4E-11 7.5E-16 114.5 17.1 199 241-499 104-308 (445)
213 PRK05137 tolB translocation pr 99.4 2.2E-10 4.8E-15 119.6 24.9 178 256-505 181-371 (435)
214 PRK02889 tolB translocation pr 99.4 1.6E-10 3.5E-15 120.2 23.6 197 235-502 195-405 (427)
215 PRK01742 tolB translocation pr 99.3 5.5E-11 1.2E-15 123.9 20.0 176 256-507 183-368 (429)
216 KOG2111 Uncharacterized conser 99.3 2.6E-10 5.6E-15 107.0 21.3 229 241-503 11-259 (346)
217 PRK04922 tolB translocation pr 99.3 1.4E-10 3.1E-15 121.0 21.8 180 257-508 184-376 (433)
218 KOG2321 WD40 repeat protein [G 99.3 4.7E-11 1E-15 119.6 16.4 113 389-501 229-344 (703)
219 KOG0322 G-protein beta subunit 99.3 8.6E-12 1.9E-16 113.9 10.2 151 249-458 167-322 (323)
220 PRK03629 tolB translocation pr 99.3 4.6E-10 9.9E-15 116.8 24.6 180 257-508 179-371 (429)
221 KOG1272 WD40-repeat-containing 99.3 2E-12 4.3E-17 126.3 6.0 190 240-503 134-326 (545)
222 TIGR02800 propeller_TolB tol-p 99.3 4.8E-10 1E-14 116.6 24.1 197 238-507 192-404 (417)
223 KOG2394 WD40 protein DMR-N9 [G 99.3 6.7E-11 1.4E-15 117.7 16.4 121 387-508 218-370 (636)
224 PRK11028 6-phosphogluconolacto 99.3 1.2E-09 2.6E-14 110.0 25.8 228 251-501 6-259 (330)
225 KOG1354 Serine/threonine prote 99.3 7.7E-11 1.7E-15 111.4 14.3 235 235-500 25-301 (433)
226 TIGR02800 propeller_TolB tol-p 99.3 8.5E-10 1.9E-14 114.7 23.7 180 256-507 169-361 (417)
227 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.7E-15 123.0 18.3 197 287-502 90-290 (967)
228 KOG2321 WD40 repeat protein [G 99.3 1.7E-10 3.6E-15 115.7 17.0 222 282-505 49-307 (703)
229 KOG1524 WD40 repeat-containing 99.3 3.6E-11 7.9E-16 119.4 12.0 212 282-510 12-226 (737)
230 PRK02889 tolB translocation pr 99.3 8.7E-10 1.9E-14 114.8 22.9 180 257-508 176-368 (427)
231 KOG4497 Uncharacterized conser 99.3 1.1E-09 2.3E-14 103.2 20.6 261 236-510 49-401 (447)
232 PF02239 Cytochrom_D1: Cytochr 99.3 2.4E-09 5.1E-14 108.6 25.0 245 238-507 39-354 (369)
233 KOG1334 WD40 repeat protein [G 99.2 1.1E-10 2.3E-15 115.0 12.4 267 229-502 136-468 (559)
234 KOG1272 WD40-repeat-containing 99.2 1.5E-11 3.3E-16 120.2 5.9 188 236-498 171-360 (545)
235 PRK00178 tolB translocation pr 99.2 3.7E-09 8E-14 110.4 24.2 199 236-507 199-413 (430)
236 KOG3881 Uncharacterized conser 99.2 3.3E-10 7.1E-15 109.0 14.5 179 242-482 155-343 (412)
237 KOG1409 Uncharacterized conser 99.2 1.9E-09 4E-14 102.3 19.2 225 230-460 19-271 (404)
238 KOG4190 Uncharacterized conser 99.2 6E-11 1.3E-15 118.1 8.7 214 228-502 728-950 (1034)
239 PRK04792 tolB translocation pr 99.2 5.8E-09 1.3E-13 109.1 23.8 199 236-507 218-432 (448)
240 KOG0974 WD-repeat protein WDR6 99.2 3.5E-10 7.5E-15 120.8 14.4 149 241-460 139-289 (967)
241 KOG4497 Uncharacterized conser 99.2 7.9E-10 1.7E-14 104.1 14.7 190 241-502 14-242 (447)
242 KOG1334 WD40 repeat protein [G 99.1 3E-10 6.5E-15 111.9 11.6 209 276-499 134-365 (559)
243 PRK01029 tolB translocation pr 99.1 8.4E-09 1.8E-13 107.1 23.2 118 390-508 282-411 (428)
244 KOG2139 WD40 repeat protein [G 99.1 6.3E-09 1.4E-13 99.3 19.5 205 236-506 141-389 (445)
245 KOG1064 RAVE (regulator of V-A 99.1 1.6E-10 3.5E-15 128.6 9.1 196 231-506 2204-2404(2439)
246 PRK00178 tolB translocation pr 99.1 2E-08 4.3E-13 105.0 23.0 178 258-507 180-370 (430)
247 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.5E-07 3.3E-12 93.7 27.8 244 242-506 52-336 (352)
248 KOG4547 WD40 repeat-containing 99.1 7.4E-09 1.6E-13 104.8 18.2 198 294-501 3-221 (541)
249 PRK04792 tolB translocation pr 99.1 2.4E-08 5.3E-13 104.4 23.0 178 258-507 199-389 (448)
250 KOG1240 Protein kinase contain 99.1 7.3E-09 1.6E-13 112.3 18.2 211 279-506 1043-1279(1431)
251 KOG0280 Uncharacterized conser 99.0 2.7E-09 5.9E-14 99.2 12.5 194 240-498 126-331 (339)
252 PF02239 Cytochrom_D1: Cytochr 99.0 1.7E-07 3.8E-12 95.0 25.6 186 250-506 9-208 (369)
253 KOG0280 Uncharacterized conser 99.0 2.5E-08 5.3E-13 93.0 17.1 232 255-503 44-287 (339)
254 PF10282 Lactonase: Lactonase, 99.0 8.9E-07 1.9E-11 89.6 29.5 250 240-508 41-332 (345)
255 KOG2315 Predicted translation 98.9 1.9E-07 4E-12 94.2 22.0 243 241-505 131-395 (566)
256 KOG2041 WD40 repeat protein [G 98.9 2.6E-07 5.6E-12 95.3 23.3 261 239-501 18-338 (1189)
257 COG5170 CDC55 Serine/threonine 98.9 6.3E-09 1.4E-13 97.4 10.3 244 235-501 26-310 (460)
258 KOG2315 Predicted translation 98.9 9.8E-07 2.1E-11 89.1 24.2 254 240-506 39-350 (566)
259 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.4E-13 97.3 11.6 79 384-464 147-228 (390)
260 PLN02919 haloacid dehalogenase 98.8 7.3E-07 1.6E-11 102.0 25.7 218 239-505 627-893 (1057)
261 PF15492 Nbas_N: Neuroblastoma 98.8 2.7E-06 5.8E-11 79.7 24.5 243 241-505 3-264 (282)
262 KOG1354 Serine/threonine prote 98.8 4.3E-08 9.3E-13 93.1 11.8 202 248-506 99-365 (433)
263 KOG4547 WD40 repeat-containing 98.8 1E-06 2.2E-11 89.6 21.3 191 244-460 2-221 (541)
264 PRK01029 tolB translocation pr 98.8 5.7E-07 1.2E-11 93.5 19.9 94 388-482 326-426 (428)
265 COG5354 Uncharacterized protei 98.8 1.8E-06 3.8E-11 86.3 21.9 265 221-505 110-400 (561)
266 KOG2314 Translation initiation 98.8 7.4E-07 1.6E-11 89.7 19.4 114 388-504 445-577 (698)
267 KOG3914 WD repeat protein WDR4 98.8 8.7E-08 1.9E-12 93.0 12.5 101 404-506 127-229 (390)
268 PRK04043 tolB translocation pr 98.8 2.9E-06 6.3E-11 87.8 24.6 194 240-508 192-408 (419)
269 KOG4190 Uncharacterized conser 98.7 1.4E-08 3.1E-13 101.5 6.7 172 278-506 729-912 (1034)
270 KOG0309 Conserved WD40 repeat- 98.7 4.2E-08 9.2E-13 101.3 9.7 210 245-519 79-298 (1081)
271 COG5354 Uncharacterized protei 98.7 3.1E-06 6.6E-11 84.7 20.7 239 238-507 35-313 (561)
272 KOG1409 Uncharacterized conser 98.7 5.5E-07 1.2E-11 85.8 14.4 209 277-502 17-272 (404)
273 KOG0882 Cyclophilin-related pe 98.7 2.8E-07 6.1E-12 90.5 12.8 245 243-507 16-312 (558)
274 PF04762 IKI3: IKI3 family; I 98.6 7.9E-06 1.7E-10 92.0 24.7 252 234-502 119-458 (928)
275 KOG2041 WD40 repeat protein [G 98.6 1.7E-07 3.7E-12 96.6 9.2 171 284-502 14-188 (1189)
276 PF07433 DUF1513: Protein of u 98.6 4.6E-05 1E-09 73.6 24.8 251 237-499 6-284 (305)
277 KOG4532 WD40-like repeat conta 98.6 9.9E-06 2.1E-10 75.0 19.0 114 391-505 161-287 (344)
278 COG4946 Uncharacterized protei 98.6 1.2E-05 2.5E-10 79.9 20.4 171 246-490 331-508 (668)
279 PF00400 WD40: WD domain, G-be 98.5 2.1E-07 4.5E-12 61.6 5.7 36 277-312 4-39 (39)
280 COG4946 Uncharacterized protei 98.5 1.8E-05 4E-10 78.5 21.3 122 386-508 357-485 (668)
281 COG2706 3-carboxymuconate cycl 98.5 0.0002 4.3E-09 69.4 27.4 249 240-508 44-331 (346)
282 PLN02919 haloacid dehalogenase 98.5 3.3E-05 7.2E-10 88.6 26.0 221 240-507 572-840 (1057)
283 PF10282 Lactonase: Lactonase, 98.5 0.00012 2.5E-09 74.2 27.2 247 250-505 2-282 (345)
284 KOG2695 WD40 repeat protein [G 98.5 4.5E-07 9.8E-12 86.4 7.9 123 387-509 251-385 (425)
285 KOG1064 RAVE (regulator of V-A 98.5 7.4E-07 1.6E-11 100.4 10.7 162 280-506 2204-2372(2439)
286 KOG4714 Nucleoporin [Nuclear s 98.5 2.7E-06 5.8E-11 78.3 12.3 107 391-498 182-316 (319)
287 PRK04043 tolB translocation pr 98.4 3.7E-05 8.1E-10 79.6 22.0 117 390-509 234-366 (419)
288 PF04762 IKI3: IKI3 family; I 98.4 2.5E-05 5.4E-10 88.1 22.1 240 236-503 76-336 (928)
289 COG2706 3-carboxymuconate cycl 98.4 7.8E-05 1.7E-09 72.1 22.0 186 256-506 15-229 (346)
290 PF00400 WD40: WD domain, G-be 98.4 9.7E-07 2.1E-11 58.3 5.7 37 379-415 2-39 (39)
291 KOG1275 PAB-dependent poly(A) 98.4 8.4E-06 1.8E-10 86.8 15.0 183 246-500 146-342 (1118)
292 KOG1832 HIV-1 Vpr-binding prot 98.4 2.4E-07 5.1E-12 97.6 3.4 205 270-506 1087-1297(1516)
293 KOG0309 Conserved WD40 repeat- 98.3 1.9E-06 4.2E-11 89.4 9.3 201 284-501 24-233 (1081)
294 KOG4714 Nucleoporin [Nuclear s 98.3 3E-06 6.4E-11 78.0 8.6 93 409-501 159-255 (319)
295 PF11768 DUF3312: Protein of u 98.2 0.0002 4.2E-09 73.8 21.5 112 389-502 206-331 (545)
296 KOG2066 Vacuolar assembly/sort 98.2 5.6E-05 1.2E-09 79.8 17.9 170 246-500 48-233 (846)
297 KOG4532 WD40-like repeat conta 98.2 0.00011 2.4E-09 68.2 17.4 183 250-503 131-334 (344)
298 KOG2695 WD40 repeat protein [G 98.2 9.9E-06 2.1E-10 77.4 11.0 152 252-471 229-388 (425)
299 PF08450 SGL: SMP-30/Gluconola 98.2 0.0034 7.3E-08 60.2 28.0 223 241-489 5-244 (246)
300 COG5170 CDC55 Serine/threonine 98.2 8.6E-06 1.9E-10 76.7 8.9 162 281-499 169-366 (460)
301 TIGR03300 assembly_YfgL outer 98.1 0.00074 1.6E-08 69.2 23.8 231 246-505 104-343 (377)
302 PF13360 PQQ_2: PQQ-like domai 98.1 0.0007 1.5E-08 64.3 22.0 215 256-505 2-235 (238)
303 KOG1912 WD40 repeat protein [G 98.1 0.00019 4.2E-09 75.5 18.8 237 239-501 19-305 (1062)
304 KOG1832 HIV-1 Vpr-binding prot 98.1 2.5E-06 5.3E-11 90.2 4.0 217 231-485 1097-1316(1516)
305 KOG1912 WD40 repeat protein [G 98.0 8.3E-05 1.8E-09 78.1 14.3 250 247-505 79-369 (1062)
306 KOG1008 Uncharacterized conser 98.0 1.2E-06 2.6E-11 89.7 0.9 191 246-500 69-275 (783)
307 PF11768 DUF3312: Protein of u 98.0 0.00026 5.6E-09 72.9 15.6 95 386-482 257-369 (545)
308 KOG2114 Vacuolar assembly/sort 97.9 0.0015 3.2E-08 69.9 21.4 202 241-462 29-246 (933)
309 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.014 2.9E-07 58.6 26.0 62 257-327 27-98 (352)
310 PF15492 Nbas_N: Neuroblastoma 97.9 0.0024 5.1E-08 60.3 19.1 191 241-464 49-264 (282)
311 KOG1645 RING-finger-containing 97.9 0.00057 1.2E-08 67.0 15.2 243 234-500 192-461 (463)
312 TIGR03300 assembly_YfgL outer 97.8 0.003 6.6E-08 64.7 21.5 225 246-505 64-302 (377)
313 PF08450 SGL: SMP-30/Gluconola 97.8 0.0081 1.8E-07 57.5 22.5 192 289-505 4-217 (246)
314 KOG0882 Cyclophilin-related pe 97.8 7.5E-05 1.6E-09 73.9 8.1 101 406-507 119-238 (558)
315 KOG1920 IkappaB kinase complex 97.8 0.0016 3.5E-08 72.1 18.8 240 236-503 69-325 (1265)
316 KOG2066 Vacuolar assembly/sort 97.7 0.00054 1.2E-08 72.6 13.8 104 399-506 82-193 (846)
317 KOG3617 WD40 and TPR repeat-co 97.7 0.00038 8.2E-09 73.9 12.5 71 239-316 63-133 (1416)
318 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0036 7.8E-08 51.1 15.2 99 391-495 2-109 (111)
319 PF08596 Lgl_C: Lethal giant l 97.7 0.0067 1.5E-07 62.1 20.5 251 238-498 4-333 (395)
320 PF13360 PQQ_2: PQQ-like domai 97.6 0.003 6.6E-08 59.9 16.6 105 398-504 35-144 (238)
321 KOG1275 PAB-dependent poly(A) 97.6 0.00044 9.5E-09 74.2 11.4 144 242-458 182-341 (1118)
322 PF06977 SdiA-regulated: SdiA- 97.6 0.018 3.9E-07 54.9 21.2 206 279-497 16-247 (248)
323 PF04053 Coatomer_WDAD: Coatom 97.5 0.003 6.4E-08 65.6 15.9 87 410-501 127-215 (443)
324 PF08596 Lgl_C: Lethal giant l 97.5 0.024 5.3E-07 58.0 21.7 152 286-458 3-172 (395)
325 KOG2314 Translation initiation 97.5 0.0014 3E-08 66.8 11.9 96 390-487 251-363 (698)
326 PRK11138 outer membrane biogen 97.4 0.054 1.2E-06 55.8 24.2 231 246-505 119-358 (394)
327 PF07433 DUF1513: Protein of u 97.4 0.11 2.4E-06 50.5 24.0 206 288-508 8-255 (305)
328 KOG1645 RING-finger-containing 97.4 0.00035 7.6E-09 68.4 6.8 81 381-461 186-268 (463)
329 PF00780 CNH: CNH domain; Int 97.4 0.16 3.5E-06 49.4 26.3 234 244-515 4-270 (275)
330 PF06433 Me-amine-dh_H: Methyl 97.4 0.069 1.5E-06 52.6 22.1 247 241-506 41-326 (342)
331 KOG3621 WD40 repeat-containing 97.4 0.00086 1.9E-08 70.2 9.4 164 283-511 32-208 (726)
332 KOG4640 Anaphase-promoting com 97.3 0.001 2.2E-08 69.0 9.3 91 388-480 20-115 (665)
333 smart00320 WD40 WD40 repeats. 97.3 0.00047 1E-08 43.6 4.8 35 278-312 6-40 (40)
334 COG3490 Uncharacterized protei 97.3 0.013 2.8E-07 55.4 15.8 209 241-499 119-347 (366)
335 PRK02888 nitrous-oxide reducta 97.3 0.016 3.4E-07 61.5 18.3 102 388-490 320-451 (635)
336 KOG3617 WD40 and TPR repeat-co 97.3 0.00034 7.3E-09 74.3 5.7 107 392-500 19-131 (1416)
337 KOG4640 Anaphase-promoting com 97.3 0.001 2.2E-08 68.9 8.5 79 427-506 19-98 (665)
338 KOG3621 WD40 repeat-containing 97.2 0.0013 2.7E-08 69.0 9.1 111 390-501 35-155 (726)
339 KOG1920 IkappaB kinase complex 97.2 0.034 7.4E-07 62.1 20.1 208 235-458 109-364 (1265)
340 PF04053 Coatomer_WDAD: Coatom 97.2 0.012 2.7E-07 61.0 16.2 177 238-460 35-215 (443)
341 PF03178 CPSF_A: CPSF A subuni 97.1 0.12 2.5E-06 51.7 22.0 174 257-497 62-262 (321)
342 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.039 8.4E-07 45.1 14.7 66 388-455 42-110 (111)
343 smart00320 WD40 WD40 repeats. 97.0 0.0021 4.6E-08 40.4 5.6 37 420-457 3-40 (40)
344 PRK02888 nitrous-oxide reducta 97.0 0.031 6.8E-07 59.4 16.9 102 397-501 285-405 (635)
345 COG0823 TolB Periplasmic compo 97.0 0.018 4E-07 59.5 15.1 109 393-503 242-361 (425)
346 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.34 7.4E-06 49.1 24.3 253 244-508 1-324 (353)
347 PF04841 Vps16_N: Vps16, N-ter 97.0 0.091 2E-06 54.4 20.2 58 440-500 189-246 (410)
348 KOG2114 Vacuolar assembly/sort 97.0 0.13 2.8E-06 55.7 21.2 200 291-503 30-246 (933)
349 PRK11138 outer membrane biogen 97.0 0.075 1.6E-06 54.8 19.5 95 400-499 295-393 (394)
350 PF08553 VID27: VID27 cytoplas 96.9 0.031 6.7E-07 61.4 15.8 118 379-499 515-646 (794)
351 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.51 1.1E-05 47.8 23.6 97 393-489 239-346 (353)
352 COG3391 Uncharacterized conser 96.6 0.84 1.8E-05 46.8 23.6 196 240-507 78-290 (381)
353 PF04841 Vps16_N: Vps16, N-ter 96.6 0.49 1.1E-05 49.0 21.8 102 388-506 216-320 (410)
354 PF08553 VID27: VID27 cytoplas 96.5 0.054 1.2E-06 59.6 14.8 150 295-458 492-646 (794)
355 PF02897 Peptidase_S9_N: Proly 96.5 1.2 2.7E-05 46.0 27.3 249 240-507 128-411 (414)
356 KOG1008 Uncharacterized conser 96.5 0.00098 2.1E-08 69.1 1.2 113 385-499 99-224 (783)
357 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.83 1.8E-05 43.0 20.4 193 246-514 22-221 (354)
358 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.096 2.1E-06 49.0 13.6 104 401-506 25-129 (354)
359 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.5E-07 40.4 5.6 39 467-505 8-46 (47)
360 PF03178 CPSF_A: CPSF A subuni 96.4 0.29 6.3E-06 48.9 18.1 109 387-500 87-202 (321)
361 KOG2395 Protein involved in va 96.3 0.12 2.6E-06 53.1 14.5 152 294-459 343-500 (644)
362 PF02897 Peptidase_S9_N: Proly 96.3 1.7 3.7E-05 45.0 25.4 213 286-507 125-365 (414)
363 COG0823 TolB Periplasmic compo 96.3 0.081 1.8E-06 54.8 13.8 124 383-507 187-321 (425)
364 cd00216 PQQ_DH Dehydrogenases 96.1 1.8 3.9E-05 46.0 23.6 100 401-505 303-429 (488)
365 PF00780 CNH: CNH domain; Int 96.0 0.44 9.5E-06 46.3 16.9 113 391-507 38-172 (275)
366 PF12894 Apc4_WD40: Anaphase-p 95.9 0.026 5.7E-07 38.6 5.4 33 284-317 11-43 (47)
367 KOG2079 Vacuolar assembly/sort 95.9 0.027 5.8E-07 62.2 8.0 96 401-499 101-202 (1206)
368 PF06977 SdiA-regulated: SdiA- 95.8 0.6 1.3E-05 44.6 16.2 204 234-456 20-247 (248)
369 COG3391 Uncharacterized conser 95.6 1.6 3.5E-05 44.8 19.8 117 390-507 117-246 (381)
370 COG3386 Gluconolactonase [Carb 95.5 3 6.5E-05 41.3 21.2 108 381-490 155-275 (307)
371 PF05694 SBP56: 56kDa selenium 95.4 0.55 1.2E-05 47.8 15.0 141 360-501 153-343 (461)
372 PF14781 BBS2_N: Ciliary BBSom 95.3 0.98 2.1E-05 38.3 13.6 108 395-504 5-129 (136)
373 KOG2079 Vacuolar assembly/sort 95.3 0.3 6.6E-06 54.3 13.4 84 246-335 98-181 (1206)
374 PRK13616 lipoprotein LpqB; Pro 95.2 0.55 1.2E-05 50.8 15.3 104 391-499 399-524 (591)
375 COG3490 Uncharacterized protei 95.1 3.2 6.8E-05 39.9 17.9 201 240-508 72-318 (366)
376 KOG2444 WD40 repeat protein [G 95.1 0.054 1.2E-06 49.8 6.2 100 401-500 72-177 (238)
377 KOG2395 Protein involved in va 94.9 0.69 1.5E-05 47.8 13.9 118 379-500 367-500 (644)
378 COG3204 Uncharacterized protei 94.8 3.9 8.5E-05 39.5 17.7 198 280-487 81-300 (316)
379 cd00216 PQQ_DH Dehydrogenases 94.6 3.7 8E-05 43.6 19.8 52 440-492 405-458 (488)
380 PF06433 Me-amine-dh_H: Methyl 94.5 1.7 3.7E-05 43.1 15.1 59 410-468 270-329 (342)
381 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 9 0.0002 41.1 23.9 55 451-505 441-495 (527)
382 KOG4499 Ca2+-binding protein R 94.1 2.3 4.9E-05 39.6 14.1 89 391-480 160-263 (310)
383 PF15390 DUF4613: Domain of un 94.0 0.95 2.1E-05 47.5 12.8 115 387-502 55-188 (671)
384 PHA02713 hypothetical protein; 93.9 2.1 4.5E-05 46.3 16.1 95 409-507 432-540 (557)
385 PRK13616 lipoprotein LpqB; Pro 93.8 0.44 9.5E-06 51.6 10.7 110 388-503 349-482 (591)
386 PF05096 Glu_cyclase_2: Glutam 93.7 3.7 7.9E-05 39.3 15.2 113 388-504 44-161 (264)
387 KOG3630 Nuclear pore complex, 93.5 1.1 2.5E-05 50.3 13.0 100 388-488 155-261 (1405)
388 KOG4441 Proteins containing BT 93.5 5.5 0.00012 43.2 18.4 109 399-509 427-555 (571)
389 TIGR02604 Piru_Ver_Nterm putat 93.5 2.6 5.7E-05 42.9 15.3 98 390-489 73-202 (367)
390 PF14583 Pectate_lyase22: Olig 93.2 11 0.00023 38.2 22.3 252 241-505 41-333 (386)
391 PF05096 Glu_cyclase_2: Glutam 93.1 8.4 0.00018 36.9 19.9 156 286-506 46-209 (264)
392 PF12234 Rav1p_C: RAVE protein 93.1 2.9 6.4E-05 45.2 15.2 109 389-499 30-155 (631)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 93.0 12 0.00027 38.5 24.6 75 428-505 307-403 (415)
394 KOG2444 WD40 repeat protein [G 93.0 0.38 8.2E-06 44.4 7.3 66 246-317 69-135 (238)
395 PF10168 Nup88: Nuclear pore c 92.9 1.8 3.9E-05 48.0 13.7 33 386-418 144-180 (717)
396 PF10168 Nup88: Nuclear pore c 92.8 4.4 9.6E-05 44.9 16.5 80 237-317 86-182 (717)
397 KOG1897 Damage-specific DNA bi 92.8 20 0.00043 40.3 22.5 114 390-507 776-907 (1096)
398 KOG1897 Damage-specific DNA bi 92.4 22 0.00048 39.9 25.9 114 391-504 490-619 (1096)
399 PF07569 Hira: TUP1-like enhan 92.4 1 2.3E-05 42.2 9.7 61 440-501 21-96 (219)
400 PF08728 CRT10: CRT10; InterP 92.0 9 0.00019 42.0 17.2 108 391-499 103-245 (717)
401 PF11635 Med16: Mediator compl 91.9 19 0.00042 40.5 20.5 68 427-495 258-345 (753)
402 PF10313 DUF2415: Uncharacteri 91.8 0.54 1.2E-05 31.3 4.9 31 285-315 1-34 (43)
403 KOG4460 Nuclear pore complex, 91.5 9.4 0.0002 39.8 15.6 37 389-425 166-206 (741)
404 PF07995 GSDH: Glucose / Sorbo 91.5 17 0.00036 36.5 25.1 75 421-495 245-330 (331)
405 COG3386 Gluconolactonase [Carb 91.3 3.9 8.4E-05 40.5 12.7 109 238-347 165-275 (307)
406 KOG3630 Nuclear pore complex, 91.0 0.51 1.1E-05 52.9 6.6 111 390-500 102-228 (1405)
407 PF14583 Pectate_lyase22: Olig 90.9 14 0.0003 37.5 16.2 97 395-491 87-208 (386)
408 PF14870 PSII_BNR: Photosynthe 90.8 18 0.00039 35.7 17.2 107 387-497 185-301 (302)
409 PHA03098 kelch-like protein; P 90.8 13 0.00028 39.9 17.4 96 409-508 406-519 (534)
410 PF08728 CRT10: CRT10; InterP 90.7 6.7 0.00014 43.0 14.6 71 388-458 163-245 (717)
411 PF15390 DUF4613: Domain of un 90.6 16 0.00035 38.7 16.6 97 392-490 116-221 (671)
412 PF10313 DUF2415: Uncharacteri 90.3 0.89 1.9E-05 30.3 4.8 32 429-460 1-34 (43)
413 COG3204 Uncharacterized protei 90.2 5.9 0.00013 38.3 12.1 115 385-500 82-210 (316)
414 KOG1983 Tomosyn and related SN 90.1 3.3 7.2E-05 47.7 12.4 76 383-463 193-268 (993)
415 PF10647 Gmad1: Lipoprotein Lp 89.8 4.4 9.5E-05 38.9 11.5 109 390-499 25-143 (253)
416 PF07569 Hira: TUP1-like enhan 89.7 1.6 3.4E-05 40.9 8.1 73 241-314 16-95 (219)
417 KOG1916 Nuclear protein, conta 89.6 0.052 1.1E-06 58.8 -2.1 163 243-418 191-375 (1283)
418 KOG1916 Nuclear protein, conta 88.8 0.4 8.8E-06 52.3 3.7 61 255-315 151-214 (1283)
419 PF12234 Rav1p_C: RAVE protein 88.5 13 0.00027 40.5 14.6 70 387-459 71-156 (631)
420 PF14761 HPS3_N: Hermansky-Pud 88.4 12 0.00025 34.7 12.4 109 393-503 22-166 (215)
421 PRK13684 Ycf48-like protein; P 87.5 30 0.00066 34.7 16.2 107 388-498 214-329 (334)
422 TIGR03074 PQQ_membr_DH membran 87.3 11 0.00024 42.3 13.8 107 399-505 194-349 (764)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.7 49 0.0011 35.5 21.1 97 408-505 180-338 (527)
424 TIGR02604 Piru_Ver_Nterm putat 86.7 22 0.00048 36.2 14.9 71 238-313 16-98 (367)
425 COG5167 VID27 Protein involved 86.5 22 0.00049 37.0 14.1 153 293-459 476-632 (776)
426 COG3823 Glutamine cyclotransfe 86.5 27 0.00058 32.2 13.3 154 295-448 55-248 (262)
427 PF14870 PSII_BNR: Photosynthe 85.6 21 0.00046 35.2 13.5 117 387-507 143-267 (302)
428 PF07995 GSDH: Glucose / Sorbo 85.2 13 0.00028 37.3 12.1 101 390-491 3-134 (331)
429 PF11715 Nup160: Nucleoporin N 85.0 3.3 7.2E-05 44.7 8.4 81 245-325 156-259 (547)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 84.6 17 0.00038 37.4 12.7 88 393-480 6-118 (415)
431 PF12657 TFIIIC_delta: Transcr 84.4 6.8 0.00015 35.2 8.8 30 389-418 86-122 (173)
432 KOG2247 WD40 repeat-containing 84.0 0.1 2.2E-06 53.1 -3.5 100 388-491 74-179 (615)
433 KOG2377 Uncharacterized conser 84.0 16 0.00035 37.4 11.7 68 246-317 32-99 (657)
434 PRK10115 protease 2; Provision 83.8 78 0.0017 35.3 28.6 68 240-316 131-209 (686)
435 KOG2280 Vacuolar assembly/sort 82.6 51 0.0011 36.2 15.3 51 388-438 216-269 (829)
436 COG5167 VID27 Protein involved 81.3 38 0.00083 35.4 13.3 96 404-500 532-632 (776)
437 PHA03098 kelch-like protein; P 81.0 34 0.00073 36.7 14.2 106 401-508 345-472 (534)
438 KOG4441 Proteins containing BT 80.9 15 0.00032 39.9 11.2 117 392-508 326-460 (571)
439 KOG3616 Selective LIM binding 80.6 3.4 7.4E-05 44.6 5.9 72 426-500 12-83 (1636)
440 PF12657 TFIIIC_delta: Transcr 80.4 8.9 0.00019 34.4 8.0 30 472-501 87-122 (173)
441 PF14727 PHTB1_N: PTHB1 N-term 79.8 80 0.0017 32.7 18.5 148 353-500 36-204 (418)
442 KOG2247 WD40 repeat-containing 79.4 0.27 5.8E-06 50.2 -2.5 137 241-450 40-179 (615)
443 PF14761 HPS3_N: Hermansky-Pud 79.2 12 0.00027 34.5 8.4 56 442-497 29-92 (215)
444 KOG4499 Ca2+-binding protein R 78.9 24 0.00052 33.1 10.0 104 240-343 162-270 (310)
445 KOG1900 Nuclear pore complex, 77.9 21 0.00045 41.5 11.2 71 387-460 177-273 (1311)
446 PF10433 MMS1_N: Mono-function 76.1 1.1E+02 0.0025 32.5 22.5 98 401-498 224-340 (504)
447 TIGR03074 PQQ_membr_DH membran 75.8 1.5E+02 0.0031 33.6 21.8 98 408-506 335-483 (764)
448 TIGR03118 PEPCTERM_chp_1 conse 75.0 88 0.0019 30.7 20.4 215 286-505 24-284 (336)
449 PF12768 Rax2: Cortical protei 74.5 38 0.00082 33.0 10.9 91 409-500 16-123 (281)
450 PF10214 Rrn6: RNA polymerase 74.3 1.6E+02 0.0035 33.3 19.4 118 386-504 77-236 (765)
451 PF11715 Nup160: Nucleoporin N 73.8 11 0.00024 40.6 7.9 66 440-505 157-253 (547)
452 PF14781 BBS2_N: Ciliary BBSom 73.7 37 0.00079 29.0 9.1 69 433-503 3-84 (136)
453 KOG2280 Vacuolar assembly/sort 73.5 1.5E+02 0.0033 32.7 18.2 36 428-464 216-251 (829)
454 KOG1983 Tomosyn and related SN 73.0 47 0.001 38.6 12.8 30 479-508 243-272 (993)
455 KOG2377 Uncharacterized conser 73.0 88 0.0019 32.4 13.0 115 387-504 65-189 (657)
456 PF05694 SBP56: 56kDa selenium 72.8 32 0.0007 35.4 10.1 128 287-419 183-344 (461)
457 PHA02713 hypothetical protein; 72.8 43 0.00093 36.3 12.0 105 401-507 306-447 (557)
458 PF10647 Gmad1: Lipoprotein Lp 72.7 91 0.002 29.8 19.5 158 238-413 26-192 (253)
459 PRK13684 Ycf48-like protein; P 71.3 72 0.0016 32.0 12.5 115 388-506 172-293 (334)
460 PLN00033 photosystem II stabil 70.9 1.1E+02 0.0025 31.4 13.9 112 391-507 241-362 (398)
461 PF07676 PD40: WD40-like Beta 70.8 14 0.0003 23.6 4.9 31 467-497 5-38 (39)
462 TIGR02276 beta_rpt_yvtn 40-res 68.9 21 0.00046 22.9 5.6 39 398-436 1-41 (42)
463 PF05935 Arylsulfotrans: Aryls 68.9 89 0.0019 33.1 13.1 109 394-506 153-307 (477)
464 TIGR02276 beta_rpt_yvtn 40-res 68.1 17 0.00037 23.3 5.0 39 440-478 2-41 (42)
465 TIGR03118 PEPCTERM_chp_1 conse 67.6 1.3E+02 0.0028 29.6 21.1 235 241-480 28-307 (336)
466 KOG2063 Vacuolar assembly/sort 66.1 1.3E+02 0.0029 34.1 14.0 74 242-318 21-100 (877)
467 PF15477 SMAP: Small acidic pr 65.0 4.4 9.5E-05 30.2 1.7 13 61-73 10-22 (69)
468 KOG4460 Nuclear pore complex, 64.9 75 0.0016 33.5 10.8 74 429-503 104-201 (741)
469 TIGR03606 non_repeat_PQQ dehyd 64.9 1.9E+02 0.0041 30.4 15.4 53 386-438 27-88 (454)
470 PF14727 PHTB1_N: PTHB1 N-term 64.0 1.9E+02 0.004 30.1 23.5 64 246-313 36-104 (418)
471 PF10214 Rrn6: RNA polymerase 63.8 2.6E+02 0.0056 31.7 21.3 109 389-501 146-277 (765)
472 PHA02790 Kelch-like protein; P 62.2 2.2E+02 0.0047 30.2 18.9 99 399-504 362-474 (480)
473 PF08801 Nucleoporin_N: Nup133 60.8 2.1E+02 0.0045 29.6 16.2 31 471-501 190-220 (422)
474 PF13449 Phytase-like: Esteras 60.1 1.9E+02 0.0041 28.8 18.0 109 390-500 86-249 (326)
475 COG1520 FOG: WD40-like repeat 59.8 1.3E+02 0.0029 30.3 12.2 104 398-504 67-175 (370)
476 PLN00033 photosystem II stabil 59.3 2.2E+02 0.0048 29.4 17.8 105 388-497 280-396 (398)
477 PF12341 DUF3639: Protein of u 57.7 24 0.00051 21.0 3.5 26 471-498 2-27 (27)
478 PF11538 Snurportin1: Snurport 57.7 15 0.00033 24.1 3.0 23 48-71 4-26 (40)
479 KOG1898 Splicing factor 3b, su 57.6 3.6E+02 0.0077 31.3 17.3 102 394-500 939-1048(1205)
480 PF10395 Utp8: Utp8 family; I 57.3 3E+02 0.0065 30.3 16.9 31 284-314 129-159 (670)
481 TIGR03032 conserved hypothetic 57.2 1.1E+02 0.0023 30.4 9.9 88 413-506 189-296 (335)
482 COG4590 ABC-type uncharacteriz 56.3 42 0.0009 34.6 7.2 168 236-463 221-390 (733)
483 PF11635 Med16: Mediator compl 56.1 3.4E+02 0.0075 30.6 15.8 66 388-454 259-345 (753)
484 PF13449 Phytase-like: Esteras 55.3 2.1E+02 0.0046 28.4 12.5 101 388-490 19-166 (326)
485 smart00564 PQQ beta-propeller 53.6 26 0.00055 21.2 3.6 22 484-505 8-29 (33)
486 PF01731 Arylesterase: Arylest 48.3 84 0.0018 24.5 6.4 49 451-501 36-85 (86)
487 TIGR03548 mutarot_permut cycli 48.3 2.8E+02 0.0061 27.3 12.9 82 409-491 139-233 (323)
488 PHA02790 Kelch-like protein; P 48.3 2E+02 0.0044 30.4 11.6 104 399-507 318-430 (480)
489 PF01436 NHL: NHL repeat; Int 47.7 52 0.0011 19.4 4.1 24 473-496 4-27 (28)
490 PF14779 BBS1: Ciliary BBSome 46.6 1.5E+02 0.0033 28.4 9.1 70 387-456 175-255 (257)
491 PF03088 Str_synth: Strictosid 45.3 91 0.002 24.5 6.2 51 447-497 33-84 (89)
492 KOG3611 Semaphorins [Signal tr 45.2 1.9E+02 0.0041 32.4 10.9 76 378-455 398-489 (737)
493 PF07676 PD40: WD40-like Beta 44.0 81 0.0018 19.9 5.5 28 387-414 7-38 (39)
494 KOG1900 Nuclear pore complex, 43.5 3.4E+02 0.0074 32.1 12.6 33 386-418 240-273 (1311)
495 PF02333 Phytase: Phytase; In 42.6 3.9E+02 0.0085 27.3 21.2 100 401-501 173-291 (381)
496 PLN02193 nitrile-specifier pro 40.6 4.6E+02 0.01 27.6 21.1 95 410-507 295-417 (470)
497 PLN02193 nitrile-specifier pro 40.3 4.7E+02 0.01 27.6 13.6 104 401-508 231-359 (470)
498 PF01011 PQQ: PQQ enzyme repea 40.0 50 0.0011 21.0 3.4 21 484-504 2-22 (38)
499 PF14779 BBS1: Ciliary BBSome 39.8 2E+02 0.0043 27.6 8.8 71 427-497 175-255 (257)
500 PLN02153 epithiospecifier prot 38.6 4.1E+02 0.0089 26.4 20.1 192 246-503 32-287 (341)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-54 Score=441.50 Aligned_cols=452 Identities=43% Similarity=0.744 Sum_probs=326.3
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 010037 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS- 79 (519)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~- 79 (519)
|+...+||| |+|||+.|+++. .|+||+..|+||.|||+|||++|| |+..
T Consensus 1 ~~~~~~ee~-~~f~~~~~~~~~---------------------------~~~~w~~~p~sv~err~~~l~~mg--ls~~~ 50 (712)
T KOG0283|consen 1 MGAPGEEEE-DRFFDASERVSP---------------------------DYDLWTSSPGSVSERRRKFLNGMG--LSSKK 50 (712)
T ss_pred CCCcccccc-ccccccccccCc---------------------------chhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence 566666444 999999999961 099999999999999999999999 6753
Q ss_pred cccccCC-CcccccccccccccccccCCceeccCCCCCCcccccCCCCcccCCCccccccccccCCcceeeeecCCCcee
Q 010037 80 LMNAEDL-EDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL 158 (519)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 158 (519)
......+ ..........++. .+.-.+-++...+ ++.-++.++ -.. ......+.. ++.|.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~~~~~~s-~~~------~~~~~~~~~--~~~~~e~ 112 (712)
T KOG0283|consen 51 TLSRSETVDRLSSSSVESNVD--------ESNHNSVEDTDSE-QCRPSSSSS-KSR------VSQSSSSIE--LDTGDEF 112 (712)
T ss_pred ccccccccccccccccccccc--------ccccccccccccc-cCCcccccc-ccc------cccccccee--eccccee
Confidence 2221111 1111111111110 0000011111111 110000000 000 001111111 6899999
Q ss_pred EEccCCCchhhhhhcccccCCCcccccccccCCCCCCccccccCCcccccc-c-------cchh-----hhhhhhccccc
Q 010037 159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE-S-------RDLV-----DAKRKVKRGWL 225 (519)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~-~-------~~~~-----~~~~~~~~~w~ 225 (519)
++.+...++++++ +.+++++..+++++|+...+.++. +.++++++..+ . .... ...++....|+
T Consensus 113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l 189 (712)
T KOG0283|consen 113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL 189 (712)
T ss_pred eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence 9999999999987 999999999999999999988888 89988866543 1 1111 11333445588
Q ss_pred cccCCeeeEeecccc---eeecCCCCe-----E--EeeecC--------CeEEEeeCCccccccccccccceee-cCCCC
Q 010037 226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS 286 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~---~~~sp~g~~-----l--asgs~d--------g~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~ 286 (519)
+.++.+.+..+.... -.+..+..- + .++..+ ..+++-...+..+++..++..|++. +|+++
T Consensus 190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga 269 (712)
T KOG0283|consen 190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA 269 (712)
T ss_pred hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence 888777666554321 111111111 0 111111 5688888888889999999999999 99999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC-CceeeeeeeccCCCee
Q 010037 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLT 365 (519)
Q Consensus 287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~ 365 (519)
|++|+||+||+|||+||+||.|+||.+...+. +........++.+.......+-+..... ................
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 99999999999999999999999999977554 3333444455555544444443333333 2222233334444555
Q ss_pred EEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (519)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~ 445 (519)
+...+...+.+.++|++.+.||.+.|.+|+|+.+++|+++++|+|||||++....|+++|.|.++||||+|+|.|.+||+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 446 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+|+.||+||||++...+++.|.+....|+++||.|||++.++|+.+|.|++|++.+.++++
T Consensus 427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999988764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-35 Score=277.10 Aligned_cols=259 Identities=21% Similarity=0.371 Sum_probs=221.0
Q ss_pred ccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC
Q 010037 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (519)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~ 304 (519)
.+....+.+|...+-|+.|+|+|..|++|+.|.++++||+.... ...+.++|...|.|++|+|||+.||+|+.
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence 44556788899999999999999999999999999999988543 33467999999999999999999999999
Q ss_pred CCcEEEEecccCeee-ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037 305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (519)
Q Consensus 305 Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (519)
||+|++||..+++++ ..+..|...+.++.|.+.+...-. ......+.++.+.+|+... +..+..
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~-----------r~las~skDg~vrIWd~~~----~~~~~~ 242 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC-----------RRLASSSKDGSVRIWDTKL----GTCVRT 242 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc-----------cceecccCCCCEEEEEccC----ceEEEE
Confidence 999999999988765 567888888888888877643211 1345677889999998876 345788
Q ss_pred eeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE---------------------------------------
Q 010037 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--------------------------------------- 424 (519)
Q Consensus 384 ~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~--------------------------------------- 424 (519)
+.+|+.+|+|+.|--+|+|++|+.|++|++|+...|.+.+.
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 99999999999999888999999999999998654321110
Q ss_pred -----------------------------------------ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 425 -----------------------------------------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 425 -----------------------------------------~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
..|..-|+.+.|+| |+.|+|+++.|..|++||-++++.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcch
Confidence 02667799999999 999999999999999999999998
Q ss_pred E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+ .+.+|-..|+.++|+.|.++|++|+.|.++++|++++.++.+
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 8 588899999999999999999999999999999999988754
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=270.26 Aligned_cols=260 Identities=23% Similarity=0.356 Sum_probs=219.6
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-----CCCEEEEEe
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLASGG 303 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~LaSgs 303 (519)
.+.++|..=|-|++|+|||+.||+|+.||.|++||.+.+... ...|.+|...|++++|.| ..++||+++
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceeccc
Confidence 345666677778999999999999999999999998866543 346889999999999976 567999999
Q ss_pred CCCcEEEEecccCeeeceeeccCCCCceEEEeec-------CCCCeEEeeccCC--------------------------
Q 010037 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN-------HLSQLIPIDVDKE-------------------------- 350 (519)
Q Consensus 304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------------------------- 350 (519)
.||.|+|||+..+.++..+..|...++|+.|-.. ....+..+....+
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 9999999999999999999999999999877422 1111111111110
Q ss_pred --------ce--------------------eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-e
Q 010037 351 --------KI--------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (519)
Q Consensus 351 --------~~--------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 401 (519)
+. ..-..+.++.+.++++|++... .+|+..+.+|..-|+.+.|+|++ +
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCccE
Confidence 00 0012467788888888887653 46788899999999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC 479 (519)
Q Consensus 402 L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s 479 (519)
+++++.|+.|++||.++|+.+.+|. |-..|+.|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.|+
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 9999999999999999999999998 999999999999 9999999999999999999999887 688899999999999
Q ss_pred eCCCEEEEEecCCeEEEEE
Q 010037 480 PDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 480 pdg~~l~sgs~dg~v~iwd 498 (519)
|||+.+++|+.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=275.17 Aligned_cols=243 Identities=21% Similarity=0.324 Sum_probs=212.0
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEec
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~I~iWd~ 313 (519)
.++..+.|+++++.||+|+.+|.++||+.... ...++|.+|+..|.++.|+|. +..||||+.||+|++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 34455789999999999999999999998743 344679999999999999996 668999999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+...+..+..|...+..+.|.+++.- ..+++-+.+-.+|+... ...+....||...|.+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~t----k~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLET----KSELLLQEGHSKGVFS 308 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhccccc----chhhHhhcccccccce
Confidence 999999999999888888888877632 23445555666666654 2345567899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCC
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 470 (519)
++|+|+| +++||+.|..-+|||+++++++..+. |...|.+|+|+| +|..+|||+.|++++|||++..+.+ ....|.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS 387 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence 9999999 99999999999999999999999996 999999999999 9999999999999999999998777 578899
Q ss_pred CceEEEEEee-CCCEEEEEecCCeEEEEECCCCeeee
Q 010037 471 EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 471 ~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+.|+.|+|+| .|.+|++++.|++++||...+.++.+
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK 424 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcccch
Confidence 9999999999 78999999999999999998876643
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=272.09 Aligned_cols=244 Identities=20% Similarity=0.344 Sum_probs=218.3
Q ss_pred cCCeeeEeecccceeecCC--CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 228 LGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~--g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
...+.+|...++++.|+|. +..+|+|+.||+|++|++... ...+.+.+|...|..++|+|+|++|+|++.|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASFD 282 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeecccc
Confidence 3457778888999999998 668999999999999998743 3446789999999999999999999999999
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
.+-++||+.++..+.....|...+.++.|.+++. ...+++.+....+|+.+. +..+..+.
T Consensus 283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRt----gr~im~L~ 342 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRT----GRCIMFLA 342 (459)
T ss_pred cchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeeccc----CcEEEEec
Confidence 9999999999998888888888888888877652 224566677777888876 45688899
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
+|..+|.+++|+|+| .|+||+.|++++|||++..+++.++. |.+-|+.|.|.|..|.+|+|++.|++++||..++.++
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 999999999999999 99999999999999999999988886 9999999999998899999999999999999999998
Q ss_pred E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
+ .+.+|.+.|.++.++||++.+++++.|.+|++|.
T Consensus 423 ~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred chhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8 5899999999999999999999999999999995
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.6e-33 Score=284.62 Aligned_cols=246 Identities=27% Similarity=0.419 Sum_probs=216.2
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccc-------cccc-----------------cccccceeecCCCCEEEE
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTM 290 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~l 290 (519)
...+.|..|++++.+||.|..|-.|++|.+...+ ..+. ......++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3455678999999999999999999999998422 0111 111224588999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (519)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (519)
.|+|+.++|+++++|++||+|.+.+..++..+..|..++..+.|.+.+ ....+++.+.+..+|.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLWs 521 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLWS 521 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeeee
Confidence 999999999999999999999999999999999888888888877553 3345567777777887
Q ss_pred CccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 010037 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS 448 (519)
Q Consensus 371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs 448 (519)
... .+|++.+.+|.+.|.|++|+|+. +++|||.|++||+||+.+|..++.|. |.++|++|+|+| +|.+|++|+
T Consensus 522 ~d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ 596 (707)
T KOG0263|consen 522 TDH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGD 596 (707)
T ss_pred ccc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecc
Confidence 655 57889999999999999999999 99999999999999999999999997 999999999999 999999999
Q ss_pred CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 449 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.||.|.|||+.++.++ .+.+|.+.|+++.|+.||..||+|+.|.+|++||+..
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999998877 6889999999999999999999999999999999864
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-31 Score=256.26 Aligned_cols=252 Identities=22% Similarity=0.397 Sum_probs=207.8
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
..+.+++|+.+|..||+|..+|.++||+..... ..+|..|+++|.+|+|+..|+||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 566789999999999999999999999986432 234678999999999999999999999999999999999
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
++....+..+..+..-+.|..+. .....+.++.+.++.... ..|+.++.+|.+.|.+|.
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~-----------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSND-----------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALK 366 (524)
T ss_pred ceEEEeeeeccCCccceEEecCc-----------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEE
Confidence 99988888777653333332221 112233343343333222 367889999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC--------CCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVV- 464 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~--------d~~~l~sgs~Dg~V~iwd~~~~~~~- 464 (519)
|+|.+ +|++++.|++++||.+....+...+. |+..|..+.|+|. .+..+++++.|++|++||+..+.++
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence 99999 99999999999999999888887775 9999999999884 3468999999999999999999988
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc-ceeEEe
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT-AYLFAL 516 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~-~~~~~l 516 (519)
.+..|..+|.+++|+|+|+++|+|+.||.|.||+++++++++-... ..++.+
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel 499 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL 499 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence 5779999999999999999999999999999999999999876443 234443
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=234.54 Aligned_cols=250 Identities=20% Similarity=0.356 Sum_probs=213.6
Q ss_pred cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
+..+.+++|..++.++.|++|.++|++++.||.+.|||.-...+. +.+..-...|..++|+|.|+++|.||.|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcC
Confidence 334678899999999999999999999999999999998755543 2345567789999999999999999999
Q ss_pred CcEEEEecccC------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 306 GTVRVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 306 g~I~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
....||++.+. ...+.+..+.....|..|..+. ..++++.+.+|.+|+... ++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-----------------~ilT~SGD~TCalWDie~----g~ 177 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-----------------HILTGSGDMTCALWDIET----GQ 177 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-----------------ceEecCCCceEEEEEccc----ce
Confidence 99999999755 2334566666666666665432 346889999999999886 45
Q ss_pred ceeEeeccCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037 380 PLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (519)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw 456 (519)
.+..|.+|.+.|.+++++| ++ .+++|+-|++.+|||++.+.++++|. |...|++|.|.| +|.-|++|+.|++.|+|
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLY 256 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEE
Confidence 5788999999999999999 56 99999999999999999999999997 999999999999 99999999999999999
Q ss_pred EcCCCcEEeecc---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 457 EVRRCQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 457 d~~~~~~~~~~~---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
|++..+.+.... ...+|++++|+..|++|.+|..|.++.+||.-.++.
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence 999987774433 345799999999999999999999999999865443
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-30 Score=233.55 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=205.2
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
..+.+++|...+..++.+++|++.++++.|+++++||+..+. ..+.|.+|...|.+++|++|.+.|+||+.|.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 345677888888899999999999999999999999998543 3456899999999999999999999999999
Q ss_pred cEEEEecccCeeeceeecc-CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
+|++|++............ ..-+.|+.|.|+....++ +.++.+..+.+|+....++ .+.+.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I--------------vs~s~DktvKvWnl~~~~l----~~~~~ 189 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII--------------VSASWDKTVKVWNLRNCQL----RTTFI 189 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE--------------EEccCCceEEEEccCCcch----hhccc
Confidence 9999998655433322222 567889999988754433 4667788899998887654 56778
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
||++.++.++++|+| ++++|+.||.+.+||++.++++..+.|...|.+++|+| +...| ....+..|+|||+.++.++
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-nrywL-~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-NRYWL-CAATATSIKIWDLESKAVV 267 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-CceeE-eeccCCceEEEeccchhhh
Confidence 999999999999999 99999999999999999999999999999999999999 55444 4445667999999998877
Q ss_pred e-----eccC-----CCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 465 D-----YTDI-----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 465 ~-----~~~~-----~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
. ..+. .-...+++|++||+.|+.|-.|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3 2222 2335678999999999999999999999875
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=9e-30 Score=231.72 Aligned_cols=254 Identities=20% Similarity=0.305 Sum_probs=214.7
Q ss_pred cCCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
.+.+.+|.+-|.+++..+. -..+++++.|..|.+|++......+ ....+.+.||...|..+..++||++.++++.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--CceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3457778888888887777 4577889999999999998664332 234567899999999999999999999999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
++++||+.+++....+..|...+.++.+.++... .++++.+.++.+|+... ....+...
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q----------------ivSGSrDkTiklwnt~g-----~ck~t~~~ 144 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ----------------IVSGSRDKTIKLWNTLG-----VCKYTIHE 144 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCce----------------eecCCCcceeeeeeecc-----cEEEEEec
Confidence 9999999999999999999999999988876633 35667777777776543 33344433
Q ss_pred c--CCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 387 H--SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 387 h--~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
+ ...|.|+.|+|+ . +|++++.|++|++||+++.+....+. |+++++.++++| ||.+.++|+.||.+.+||++.
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence 3 789999999998 4 99999999999999999999888875 999999999999 999999999999999999999
Q ss_pred CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
++.+....+...|.+++|+|+...|+.+.. ..|+|||+.++.++.
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVE 268 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhh
Confidence 999999999999999999999877766664 459999999877653
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=225.10 Aligned_cols=283 Identities=18% Similarity=0.261 Sum_probs=229.6
Q ss_pred hhhhhhcccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceee
Q 010037 167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL 243 (519)
Q Consensus 167 ~~~~~~~l~~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 243 (519)
||.++ |..+.| .|.|-.++-++-+- ||........ +.-...+.| |...+|
T Consensus 53 GH~~K--i~~~~ws~Dsr~ivSaSqDGklI-----vWDs~TtnK~-------haipl~s~W-------------VMtCA~ 105 (343)
T KOG0286|consen 53 GHLNK--IYAMDWSTDSRRIVSASQDGKLI-----VWDSFTTNKV-------HAIPLPSSW-------------VMTCAY 105 (343)
T ss_pred ccccc--eeeeEecCCcCeEEeeccCCeEE-----EEEcccccce-------eEEecCcee-------------EEEEEE
Confidence 45555 556555 55666666665554 7765543211 111222333 223599
Q ss_pred cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (519)
Q Consensus 244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~ 323 (519)
+|.|+++|+|+-|+...||++.....+- .....+++.+|++-+.|+.|-+|+ .|+|++.|.+..+||+++++....+.
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec
Confidence 9999999999999999999998543322 234556789999999999999865 58899999999999999999999999
Q ss_pred ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (519)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L 402 (519)
.|...+..+.+.+...+ ..+.++.+....+|+.+. +..++.|.+|...|+.++|.|+| -+
T Consensus 184 GH~gDV~slsl~p~~~n---------------tFvSg~cD~~aklWD~R~----~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGN---------------TFVSGGCDKSAKLWDVRS----GQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred CCcccEEEEecCCCCCC---------------eEEecccccceeeeeccC----cceeEeecccccccceEEEccCCCee
Confidence 98888888777765332 234667777888888876 45688999999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCeEEEEecC---CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037 403 LSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (519)
Q Consensus 403 ~sgs~Dg~V~lWdl~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~ 478 (519)
++|+.|++.|+||++..+.+..+.| ...|++++|+- .|++|.+|..|.++.+||.-.++.+ .+.+|.+.|+++..
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 9999999999999999999999975 45799999999 9999999999999999999888777 68899999999999
Q ss_pred eeCCCEEEEEecCCeEEEEE
Q 010037 479 CPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwd 498 (519)
+|||..|++|+.|..++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-29 Score=225.52 Aligned_cols=261 Identities=17% Similarity=0.217 Sum_probs=219.7
Q ss_pred ceeeeecCCCceeEEccCCCchhhhhhcccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhcc
Q 010037 146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222 (519)
Q Consensus 146 ~~~~~~~d~g~~~~~~~~~~~~~~~~~~l~~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~ 222 (519)
.-+|+++-.+..|.|+....++|.++ +|.+++ |++|+.++|+.+.. +|+-..+++++...++++++++|+
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~~lEGHEnEVK~ 110 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVATLEGHENEVKC 110 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEeeeeccccceeE
Confidence 35677777777899999999999999 999999 99999999999999 999888899998888877777665
Q ss_pred ccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE
Q 010037 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (519)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg 302 (519)
++|+++|.+||++++|+.|-||.+.... .+.+...++.|+..|..+.|+|...+|+|+
T Consensus 111 ------------------Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 111 ------------------VAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ------------------EEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 7999999999999999999999988332 344556789999999999999999999999
Q ss_pred eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (519)
Q Consensus 303 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (519)
++|.+|++|+-..+.- -....
T Consensus 169 SYDnTIk~~~~~~ddd-----------------------------------------------------------W~c~~ 189 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDD-----------------------------------------------------------WECVQ 189 (312)
T ss_pred ccCCeEEEEeecCCCC-----------------------------------------------------------eeEEE
Confidence 9999999998642110 12356
Q ss_pred EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
++.+|...|.+++|+|.| .|++++.|++|+||-..+. -...|+..++.+.|. ...|++++.|+.|++|.....
T Consensus 190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec---ccceEeccCCCEEEEEEecCC
Confidence 788999999999999999 9999999999999986622 122388899999996 468999999999999987642
Q ss_pred ------cEE--eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037 462 ------QVV--DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 462 ------~~~--~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~ 500 (519)
+++ ....|...|++++|.|. .++|++|+.||.|++|.+.
T Consensus 264 ~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111 24568889999999994 6789999999999999874
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=218.68 Aligned_cols=251 Identities=16% Similarity=0.292 Sum_probs=203.4
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
++......|+.+.+.|+++.||+++. ..|++||+...+.. ...+|.+|++.|.++.|..+|++++||++||+++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 34444556777999999999999865 67999999865542 3457899999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
|||++...+.+.++.. .++.++...++.. ..+.+..++.+.+|+...-.....++.+ ...
T Consensus 109 IWdlR~~~~qR~~~~~-spVn~vvlhpnQt----------------eLis~dqsg~irvWDl~~~~c~~~liPe---~~~ 168 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQHN-SPVNTVVLHPNQT----------------ELISGDQSGNIRVWDLGENSCTHELIPE---DDT 168 (311)
T ss_pred EEeccCcccchhccCC-CCcceEEecCCcc----------------eEEeecCCCcEEEEEccCCccccccCCC---CCc
Confidence 9999998777777665 5666666665542 3345667788888887654433333322 236
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe------EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
.|.+++..|+| +|+.+...|...+|++-+.+ ++..+. |+..+..+.++| +++||++++.|.+++||+..+.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 89999999999 99999999999999987653 333443 999999999999 9999999999999999999987
Q ss_pred cEE--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 462 QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 462 ~~~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
-.. .+.+|...+..++|+.||.+|++|+.|+.+++|+++.++.+..
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 222 5778889999999999999999999999999999999886543
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=247.43 Aligned_cols=250 Identities=22% Similarity=0.386 Sum_probs=204.1
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
..+|.+.+.+++++|||+++|+|+.||.|+|||... .++..+|..|+..|+.+.|+..|+.|++++.||+|+.
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 466788899999999999999999999999999873 3455678999999999999999999999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
||+......+++..+... .......+..+.++++ ..-....+.+|+.+. ++.+..+.||.++
T Consensus 419 wDlkRYrNfRTft~P~p~-QfscvavD~sGelV~A-------------G~~d~F~IfvWS~qT----GqllDiLsGHEgP 480 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCA-------------GAQDSFEIFVWSVQT----GQLLDILSGHEGP 480 (893)
T ss_pred eeecccceeeeecCCCce-eeeEEEEcCCCCEEEe-------------eccceEEEEEEEeec----CeeeehhcCCCCc
Confidence 999999988888765432 2222233333333322 223344677777766 4457789999999
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--- 465 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--- 465 (519)
|.+++|+|.+ .|+++|.|++||+||+-.. ..+.++.+...++.++|.| +|.-+++++.||.|.+||+..+..+.
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999999 9999999999999998543 5667888999999999999 99999999999999999987654331
Q ss_pred ------------------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 466 ------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 466 ------------------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
........+.++|++||..|++|+....|+||++.++-+++
T Consensus 560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred chhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 11233568999999999999999999999999999886554
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=230.67 Aligned_cols=250 Identities=21% Similarity=0.332 Sum_probs=218.2
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
++++...+..+-|+|+-..+++++.|++|++||...+.. ...++||+++|..|.|+..|++||+++.|-.+++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 556777777788999999999999999999999986554 3458999999999999999999999999999999
Q ss_pred Eeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 311 WKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 311 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
||..+ .++++.+..+...+.++.+.+.+. ..+..+.+.++..|+... +..+.++.+|..
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd----------------~ilS~srD~tik~We~~t----g~cv~t~~~h~e 236 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD----------------HILSCSRDNTIKAWECDT----GYCVKTFPGHSE 236 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCC----------------eeeecccccceeEEeccc----ceeEEeccCchH
Confidence 99987 667778888888888888887751 223455566666776655 456888999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC--------------CCCEEEEEeCCCeE
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DDNYFISGSIDGKV 453 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~--------------d~~~l~sgs~Dg~V 453 (519)
.|..++.+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|.|. .+.++.+++.|++|
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 99999999999 99999999999999999999998886 9999999999873 23699999999999
Q ss_pred EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
++||+.++.++ .+.+|.+.|..++|+|.|++|+++..|+++++||++++++...
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 99999999988 7999999999999999999999999999999999999887553
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=5.1e-28 Score=226.68 Aligned_cols=258 Identities=20% Similarity=0.367 Sum_probs=222.8
Q ss_pred hccccc---cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC
Q 010037 220 VKRGWL---KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG 296 (519)
Q Consensus 220 ~~~~w~---~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg 296 (519)
.+..|. +..+.+.+|..=+.|+++.|.+.++++|+.|++|+|||+..+...+ ++.||...|..+++|+-.
T Consensus 133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRH 205 (460)
T ss_pred CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccC
Confidence 445563 4445688899999999999999999999999999999998666443 478999999999999999
Q ss_pred CEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (519)
Q Consensus 297 ~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (519)
.||++++.|+.|+.||+..++.+..+..+-..+.|+...+.- ...++++.+..+.+|+.+.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRt--- 266 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRT--- 266 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeecc---
Confidence 999999999999999999999998888877766666554332 2345778888999999876
Q ss_pred cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
...++.+.||..+|..+.+.|-. .+++|+.|++|++||+..++...++. |...|.+++.+| ....||+++.| .|+
T Consensus 267 -r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik 343 (460)
T KOG0285|consen 267 -RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIK 343 (460)
T ss_pred -cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cce
Confidence 34588999999999999999877 99999999999999999998887775 889999999999 89999999987 699
Q ss_pred EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
-|++..+..+ .+.+|...|++++.+.|| ++++|+.+|.+.+||.+++..+|.
T Consensus 344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 344 QWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred eccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 9999998877 588899999999999988 688999999999999999876664
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=235.13 Aligned_cols=237 Identities=22% Similarity=0.355 Sum_probs=198.3
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
..|..+.|.|+|+.|++|+..|.+.+|+.....-+ ..+++|..+|.+|.|+++|.+++||..+|.|++|+..-
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHH-------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 34556899999999999999999999997532222 23678999999999999999999999999999999855
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
.........+...+.+++|+++.. +.++.+.++.+.+|+... .++-..+.||.-.|.+++
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDs----------------kF~t~SdDg~ikiWdf~~----~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDS----------------KFLTCSDDGTIKIWDFRM----PKEERVLRGHGWDVKSVD 229 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCc----------------eeEEecCCCeEEEEeccC----CchhheeccCCCCcceec
Confidence 443333333346778888877542 234567778888887654 344556799999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EEeeccCCCc
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREI 472 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~~ 472 (519)
|+|.. +|++++.|..|++||.+++.|+.++. |+..|..+.|+| ++++|+++|.|..++++|+++.+ +..+.+|...
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd 308 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD 308 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhh
Confidence 99987 99999999999999999999999886 999999999999 88999999999999999999654 4468889999
Q ss_pred eEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037 473 VSAVCYCPD-GKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 473 V~~v~~spd-g~~l~sgs~dg~v~iwdl~ 500 (519)
|++++|+|- ..+|.+|+.||.|..|.+.
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred heeeccccccccceeeccCCCceEEEecc
Confidence 999999994 4678889999999999987
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=235.00 Aligned_cols=241 Identities=19% Similarity=0.282 Sum_probs=208.8
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
+..|.+.|.++.|+++|.++++|+.+|.|++|+..... .+.+++| ...|++++|+|+...++||++||+|+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 34567888889999999999999999999999976333 2334555 48999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
|||....+....+..+.-.+.++.|.+... ....++.+..+.+|+++. +..+.++.+|+.
T Consensus 206 iWdf~~~kee~vL~GHgwdVksvdWHP~kg----------------LiasgskDnlVKlWDprS----g~cl~tlh~HKn 265 (464)
T KOG0284|consen 206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKG----------------LIASGSKDNLVKLWDPRS----GSCLATLHGHKN 265 (464)
T ss_pred EEeccCCchhheeccCCCCcceeccCCccc----------------eeEEccCCceeEeecCCC----cchhhhhhhccc
Confidence 999998888778888888888888776542 234566677888999987 456889999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--e
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--D 465 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~ 465 (519)
.|..+.|+|++ +|+|+|.|..++++|+++.+.+.++. |...|+++.|+|....+|.+|+.||.|..|.+...+.+ -
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 99999999999 99999999999999999888888886 99999999999999999999999999999999855544 3
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
-.+|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 4578899999999999999999999999999975
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=222.46 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=206.4
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+.+|.+.+..++|+..|++||+++.|-.+++|+.... ..+.+.+.+|...|.+++|-|.|.+|++++.|.+|+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 46778888888999999999999999999999998743 334456789999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+|++.++-+++++..+..-+..+... ... ......+.+..+.+|..... .....+..|.-
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~--~DG--------------ti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh 278 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVN--QDG--------------TIIASCSNDQTLRVWVVATK----QCKAELREHEH 278 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEec--CCe--------------eEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence 99999999999998877644333322 211 22345566667777766542 23566888999
Q ss_pred CeeEEEEcC--------------CC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037 390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (519)
Q Consensus 390 ~V~~l~~sp--------------~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (519)
+|-|++|-| ++ ++.+++.|++|++||+.++.|+.++. |...|..++|+| .|+||+++..|++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT 357 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence 999999976 22 88999999999999999999999986 999999999999 9999999999999
Q ss_pred EEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 453 V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
|++||+++.+++ .+..|..-|+++.|+.+-.++++|+.|..+++|.-
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999988 47789999999999999999999999999999974
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=210.40 Aligned_cols=208 Identities=24% Similarity=0.398 Sum_probs=175.5
Q ss_pred cCCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
.+.+.+|.+++-.++|+|. |..||+++.|+.|+||+...... ..+...+ .+|+..|+.++|+|.|+|||+|+.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 3456677788888999999 89999999999999999884211 1111112 3799999999999999999999999
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
.++.||.-..++. +.+.++.
T Consensus 83 ~t~~Iw~k~~~ef------------------------------------------------------------ecv~~lE 102 (312)
T KOG0645|consen 83 ATVVIWKKEDGEF------------------------------------------------------------ECVATLE 102 (312)
T ss_pred ceEEEeecCCCce------------------------------------------------------------eEEeeee
Confidence 9999998644331 2356789
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
||...|.|++|+++| +|+|++.|+.|-||.+..+ .+...+. |...|..+.|+| ...+|++++.|.+|++|.-..
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence 999999999999999 9999999999999999754 5666665 999999999999 899999999999999998773
Q ss_pred C---cEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 461 C---QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 461 ~---~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
. .++ .+.+|...|.+++|+|.|..|++++.|++|+||-+.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 2 334 678888899999999999999999999999999843
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=241.28 Aligned_cols=246 Identities=25% Similarity=0.455 Sum_probs=209.0
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec-
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV- 313 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~- 313 (519)
...+.++.|+|+|+.+++++.++.|++|+...... ...+++.+|...|.+++|+|++++|++|+.|++|+|||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 45566789999999999999999999999954332 233456899999999999999999999999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
..+.+++.+..|...+.++.|.+.. ..+ +.++.+..|.+|+.+. ++++..+.+|...|++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i---------------~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLL---------------VSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG 293 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-CEE---------------EEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence 5568889999999999888888776 333 4667888999999887 6778999999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEec-CCC--cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-ee
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~-h~~--~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 466 (519)
++|++++ +|++++.|+.|+|||+.++. ++..+. +.. .+++++|+| ++.++++++.|+.+++||+..+..+ .+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence 9999999 99999999999999999999 556664 333 699999999 9999999999999999999988776 46
Q ss_pred ccCCCc---eEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 467 TDIREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 467 ~~~~~~---V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
..|... +.+...++.|.++++|+.|+.|++||+.++...+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 666553 4455667899999999999999999999765544
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=211.57 Aligned_cols=259 Identities=20% Similarity=0.293 Sum_probs=203.5
Q ss_pred cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
.+...+.+|...+..+.|+|+|.++|+|+.|..|.+|++......+. .+++|.++|..+.|.+|++.|++++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCC
Confidence 34445667788888899999999999999999999999765444333 467999999999999999999999999
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee----------------------------ee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT----------------------------KS 357 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~ 357 (519)
.+|+.||+++++++..++.+..-+..+. +...+..........+..+. ..
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred ceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 9999999999999988888776554443 22222222111111111111 11
Q ss_pred eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEec---CC-
Q 010037 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS---HN- 428 (519)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~----~~~~~~~~---h~- 428 (519)
+.+.-++.+.+|+++. ....+.+.||..+|+.|..+|+| ++++-++|.+|++||++- .++++.+. |.
T Consensus 190 ~sggIdn~ikvWd~r~----~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRK----NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eeccccCceeeecccc----CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 3344455566666643 34578899999999999999999 999999999999999974 46677775 33
Q ss_pred -CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037 429 -NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (519)
Q Consensus 429 -~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw 497 (519)
......+|+| +++++.+|+.|..+++||.....++ .+.+|.+.|++++|+|....|.+++.|.+|++=
T Consensus 266 eknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 266 EKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 3456779999 9999999999999999999986666 799999999999999999999999999998763
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.9e-28 Score=226.57 Aligned_cols=226 Identities=22% Similarity=0.398 Sum_probs=190.6
Q ss_pred ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee
Q 010037 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (519)
Q Consensus 243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~ 322 (519)
+--|+..+++|..|++|+|||.+ ...+...+.||++.|.|+.|. .+.|++|+.|.+|+|||++++++++++
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred EEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence 44567789999999999999987 445556789999999999995 569999999999999999999999888
Q ss_pred eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeE
Q 010037 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402 (519)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L 402 (519)
-.+...+..+.|..+ ..++.+.+..+.+|+..... .....+.+.||...|+.+.|+.. ++
T Consensus 274 ihHceaVLhlrf~ng------------------~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-yI 333 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSNG------------------YMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-YI 333 (499)
T ss_pred hhhcceeEEEEEeCC------------------EEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-eE
Confidence 777666555544322 22455666777777765433 23445678899999999999766 99
Q ss_pred EEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEee
Q 010037 403 LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCP 480 (519)
Q Consensus 403 ~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp 480 (519)
++++.|.+|++|++.+.++++++. |...|-|+++ .++++++|+.|.+|++||+..|.++. +.+|..-|.++.|
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-- 408 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 408 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--
Confidence 999999999999999999999996 9999999998 67999999999999999999999984 7889999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCC
Q 010037 481 DGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 481 dg~~l~sgs~dg~v~iwdl~~~ 502 (519)
|.+.+++|..||+|+|||+..+
T Consensus 409 d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 409 DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred cCceeeeccccceEEEEecccc
Confidence 6778999999999999999754
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=1.9e-25 Score=218.96 Aligned_cols=245 Identities=20% Similarity=0.309 Sum_probs=185.9
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
...|..-|.++.|+|||.++|+.+.||+|.+||-+.+.+... ...-.+|++.|.+|.|+||++.|+|++.|.+++|
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 445667788899999999999999999999999876554211 0112489999999999999999999999999999
Q ss_pred EecccCeeeceeeccCCC---CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 311 WKVIEHERLDGFDVQDTD---PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
||+.+.++..++...... ...+.|. ...+ +.-+..+.+.++++... .+++.+.||
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~l---------------ItVSl~G~in~ln~~d~----~~~~~i~GH 319 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHL---------------ITVSLSGTINYLNPSDP----SVLKVISGH 319 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEe---CCeE---------------EEEEcCcEEEEecccCC----Chhheeccc
Confidence 999999988888665441 1111121 1112 22333444555544432 357778889
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--------------------------------------------
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-------------------------------------------- 422 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~-------------------------------------------- 422 (519)
...|++++.+|++ +|++|+.||.|.-|+..++..-
T Consensus 320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence 9999999999988 8999999999888876532110
Q ss_pred --------------------------------------------------------------------------------
Q 010037 423 -------------------------------------------------------------------------------- 422 (519)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (519)
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence
Q ss_pred --EEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 423 --RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 423 --~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
....|..+|++|+++| ++.|||+|...++|.+||+.+.++. .|.-|...|.+++|+|+.+++|+|+.|-.|.||+
T Consensus 480 e~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 0112567788888888 8888888888888888888877665 4677999999999999999999999999999999
Q ss_pred CCCC
Q 010037 499 IKGM 502 (519)
Q Consensus 499 l~~~ 502 (519)
+...
T Consensus 559 v~kP 562 (603)
T KOG0318|consen 559 VKKP 562 (603)
T ss_pred ccCh
Confidence 9754
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2e-27 Score=230.84 Aligned_cols=244 Identities=22% Similarity=0.341 Sum_probs=204.4
Q ss_pred cCCeeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
.....+|...+.++.|.| .+.+|++++.|+.|+||++... ..+.+++.+|..+|..++|+++|..++|++.|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 345778889999999999 8999999999999999998752 334567899999999999999999999999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|++||+++|+++..+.... .+.|+.+.+...+.+ +.+..++.++.|+.+... .++++..
T Consensus 281 ~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~f---------------l~G~sd~ki~~wDiRs~k----vvqeYd~ 340 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIF---------------LVGGSDKKIRQWDIRSGK----VVQEYDR 340 (503)
T ss_pred eeeeeccccceEEEEEecCC-CceeeecCCCCCcEE---------------EEecCCCcEEEEeccchH----HHHHHHh
Confidence 99999999999988887643 456777766663332 456677788888888754 4777888
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE--------------------------------ec-------
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--------------------------------FS------- 426 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~--------------------------------~~------- 426 (519)
|-+.|..+.|-++| ++++++.|++|+||+.+.+.+++. |.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999999999 999999999999999775433221 10
Q ss_pred ----------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCC-CEEEEEecCCeE
Q 010037 427 ----------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNC 494 (519)
Q Consensus 427 ----------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v 494 (519)
-.++-..+.|+| |+.+|++|+.||.+.+||.++.+++ .+..|..++..+.|+|.. ..+|+++.+|.|
T Consensus 421 nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred CHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCcee
Confidence 135567789999 9999999999999999999999888 688899999999999965 579999999999
Q ss_pred EEEE
Q 010037 495 RFYD 498 (519)
Q Consensus 495 ~iwd 498 (519)
++||
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9996
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=230.26 Aligned_cols=247 Identities=21% Similarity=0.294 Sum_probs=214.3
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
+.++|.++.|||....++++-.+|+|.||+++++. +.+.+.-..-||++.+|-+..+++++|+.|..||||++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 56888899999999999999999999999998544 33456667889999999999999999999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+++.+..+..|...+.++...|..+. .++.+.+..+.+|+-.. .....+++.||...|.+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~----------------vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPY----------------VLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQ 145 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCe----------------EEecCCccEEEEeeccC---ceeeeeEEcCcceEEEE
Confidence 999999999999999999887776543 23455566666665432 23457889999999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEE-eecc
Q 010037 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (519)
Q Consensus 394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~ 468 (519)
++|+|.. .+++++.|++|+||.+.+..+..++. |...|+||.+-|. +..||++|+.|.+|+|||..+..++ .+.+
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 9999977 99999999999999999999999886 9999999999872 2359999999999999999999998 4788
Q ss_pred CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 469 ~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
|...|..++|+|.-..+++|+.||++|||+..+-++..
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 99999999999999999999999999999998766543
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2e-26 Score=223.01 Aligned_cols=209 Identities=25% Similarity=0.426 Sum_probs=181.5
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----------------------------------cc
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SL 274 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----------------------------------~~ 274 (519)
.++.+|..++.++.|+..|.+|++++.||++.+||...+..... .-
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence 34677888899999999999999999999999999954332110 00
Q ss_pred cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (519)
Q Consensus 275 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (519)
.+..++.+|.++|.+|.|+|.|.+|+|++.|++++||......+
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~------------------------------------ 393 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS------------------------------------ 393 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc------------------------------------
Confidence 12246889999999999999999999999999999999765543
Q ss_pred eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC----------eEEEEeCCCcEEEEECCCCeEEEE
Q 010037 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLRV 424 (519)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----------~L~sgs~Dg~V~lWdl~~~~~~~~ 424 (519)
.+.+++|...|..+.|+|.| .|++++.|++|++||+..+.++.+
T Consensus 394 --------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 394 --------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred --------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 34466788888888888732 799999999999999999999999
Q ss_pred e-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 425 ~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
| +|..+|++|+|+| ++.|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|..+-.||.+++.|++
T Consensus 448 f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9 6999999999999 9999999999999999999999999888888889999999999999999999999999975
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=2.2e-26 Score=235.90 Aligned_cols=204 Identities=23% Similarity=0.371 Sum_probs=184.3
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+.+|..+|....|+|+.++|++++.|++|++|.+.... +.-.++||..||+++.|+|.|-|+|||+.|++.+
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 378899999999999999999999999999999987433 3345789999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+|........+.+..+...+.|+.|.|+.. ...+++.+.++.+|+.... ..++.|.||.+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~ 578 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVSTG----NSVRIFTGHKG 578 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCCC----cEEEEecCCCC
Confidence 999999999999999999999999988763 2346788889999988763 44888999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
+|.+++|+|+| +|++|+.|+.|+|||+.+++.+..+. |.+.|++|.|+. ++..||+|+.|.+|++||+...
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhh
Confidence 99999999999 99999999999999999999888875 999999999999 9999999999999999998653
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.6e-25 Score=214.28 Aligned_cols=248 Identities=25% Similarity=0.447 Sum_probs=202.0
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+..|.+.+.+++|+|+++++++++.+|.|++|++.... ....+..|...|..+.|+|++++|++++.||.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455677888899999999999999999999999987543 2235678999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+|++.+++....+..+...+.++.+.+. ..++ +.+..++.+.+|+... .+....+..|..
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~--------------~~~~~~~~i~~~~~~~----~~~~~~~~~~~~ 136 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRIL--------------SSSSRDKTIKVWDVET----GKCLTTLRGHTD 136 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCC--CCEE--------------EEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence 9999987777666665555556655544 1122 1222355666666552 344566778999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 467 (519)
.|.+++|+|++ ++++++.|+.|++||+++++.+..+. |...++++.|+| +++.+++++.|+.|++||+++++.+...
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999988 77777779999999999888888776 777999999999 8889999999999999999988877544
Q ss_pred -cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 468 -~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.+...+.+++|+|++.++++++.+|.|++||+.+++..
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 78889999999999988888888999999999876543
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=8.8e-26 Score=212.55 Aligned_cols=252 Identities=19% Similarity=0.206 Sum_probs=200.2
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
....+..|.+.+-+++.+|+.+++++|+.|..-.||+...+.. .-++.+|+..|.++.|+.+|.|||||+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 3445667888888999999999999999999999999986652 235789999999999999999999999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|+||+..++.....+...-..+.-+.|.+ .. ...+.++.++.+.+|..... ...+.+.|
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp---~a-------------~illAG~~DGsvWmw~ip~~----~~~kv~~G 188 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHP---RA-------------HILLAGSTDGSVWMWQIPSQ----ALCKVMSG 188 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEecc---cc-------------cEEEeecCCCcEEEEECCCc----ceeeEecC
Confidence 999999999987776653333333333332 11 12345677777777765442 44677899
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---C-----------------------------------
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H----------------------------------- 427 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h----------------------------------- 427 (519)
|+.++++=.|.|+| +++++..||+|++||..+++++..+. |
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 99999999999999 99999999999999999998876553 0
Q ss_pred --------------CCcEEEEEEeeC--CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037 428 --------------NNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 428 --------------~~~V~~v~fsp~--d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
...+.||.+.|. .-.++|+|+.||+|.|||+...++.+...|...|+.+.|-+ ..+|++++.+
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence 011112222221 33578899999999999999999999999999999999999 6789999999
Q ss_pred CeEEEEECCCCeeee
Q 010037 492 GNCRFYDIKGMQIFD 506 (519)
Q Consensus 492 g~v~iwdl~~~~l~~ 506 (519)
|.|+.||.++|++.-
T Consensus 348 g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 348 GKVRQWDARTGQLKF 362 (399)
T ss_pred ceEEeeeccccceEE
Confidence 999999999998854
No 31
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.1e-25 Score=232.50 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=170.2
Q ss_pred eeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcE
Q 010037 231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I 308 (519)
+.+|.+.+.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 566788888999999 888999999999999999975432111112334678999999999999975 699999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (519)
+|||+.+++. +..+.+|.
T Consensus 151 rIWDl~tg~~--------------------------------------------------------------~~~l~~h~ 168 (493)
T PTZ00421 151 NVWDVERGKA--------------------------------------------------------------VEVIKCHS 168 (493)
T ss_pred EEEECCCCeE--------------------------------------------------------------EEEEcCCC
Confidence 9999976642 23456788
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc-EEEEEEeeCCCCEEEEEe----CCCeEEEEEcCCC
Q 010037 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRRC 461 (519)
Q Consensus 389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~-V~~v~fsp~d~~~l~sgs----~Dg~V~iwd~~~~ 461 (519)
..|.+++|+|++ +|++++.|++|+|||+++++.+..+. |... +..+.|.| ++..+++++ .|+.|++||+++.
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999999999 99999999999999999999888775 6554 45778998 666666543 4799999999875
Q ss_pred c-EEeec--cCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeeeec
Q 010037 462 Q-VVDYT--DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 462 ~-~~~~~--~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~~~ 507 (519)
. .+... .....+....|++++++|++++ .||.|++||+.+++++..
T Consensus 248 ~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 248 ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 4 33322 2334566678999999999887 599999999998876543
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=227.48 Aligned_cols=239 Identities=27% Similarity=0.418 Sum_probs=200.2
Q ss_pred cccceeecCCCCeEEeeecC-CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 237 RHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~d-g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
++..++|+..|..||.|+.. |++-||++......+ ..++|...|.+++++|||+++|||++||.|+|||..+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 34457899999999997654 899999998544332 3578999999999999999999999999999999999
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc-CCCeeEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDL 394 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l 394 (519)
+-|..++..|...++.+.|...+. ..+..+.++++..|+.+.++- .+++... .....|+
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~----------------~llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGN----------------VLLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSCV 441 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCC----------------EEEEeecCCeEEeeeecccce----eeeecCCCceeeeEE
Confidence 999999999999888888876653 234567788888888765432 4444442 3467899
Q ss_pred EEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEeeccCC
Q 010037 395 SWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIR 470 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg-~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~~ 470 (519)
+..|.| .+.+|+.|. .|.+|++++|+.+-.+. |.++|.+++|+| .+..|++||.|.+||+||+-.. ..+....+.
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeec
Confidence 999999 667777664 59999999999999996 999999999999 9999999999999999998654 455666778
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
..+++++|+|||+.|++++.||.|.+||+..+.
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 889999999999999999999999999997654
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.9e-26 Score=229.52 Aligned_cols=246 Identities=21% Similarity=0.296 Sum_probs=204.0
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR 309 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~ 309 (519)
+.+|.+.+.++....+|.+|++|++|.++++|.+++... ...+.+...+|+..|.+++++..+ .+|+++|.|++++
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 455666666766667788999999999999999843332 233445568999999999998755 5999999999999
Q ss_pred EEecccCee---------eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037 310 VWKVIEHER---------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (519)
Q Consensus 310 iWd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (519)
+|++...+. ......|...+.++.+.++. ....+++.+.++.+|.... ...
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd----------------kLiAT~SqDktaKiW~le~----~~l 497 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND----------------KLIATGSQDKTAKIWDLEQ----LRL 497 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCC----------------ceEEecccccceeeecccC----ceE
Confidence 999976221 11223455566666666554 1234677788888887763 345
Q ss_pred eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
...+.||+..|.|+.|+|.. .++|+|.|++|+||.+.+..|+++|. |...|..+.|-. ++..|++++.||-|+||++
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence 78899999999999999988 99999999999999999999999998 999999999999 9999999999999999999
Q ss_pred CCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 459 ~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+++.+. .+..|.+.|++++-+|.+.++++|+.||.|.+|.=.
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999988 588899999999999999999999999999999643
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-25 Score=231.68 Aligned_cols=256 Identities=19% Similarity=0.284 Sum_probs=212.7
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
.++..++|||....++++-..|.|++||+..+. ....|..|.++|..+.|+|++.+++|||.|-.|+||++.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 456668999999999999999999999998433 2345789999999999999999999999999999999999
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
.+++.++..|...+..+.|...- -+.++.+.+-++.+|+... .+.+..+.||...|.|..
T Consensus 83 rrclftL~GHlDYVRt~~FHhey----------------PWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEY----------------PWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ceehhhhccccceeEEeeccCCC----------------ceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence 99999998888877777765433 3456778888888887765 467899999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCe----------------------------EE-EEe-cCCCcEEEEEEeeCCCCEE
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDR----------------------------CL-RVF-SHNNYVTSVAFNPVDDNYF 444 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~----------------------------~~-~~~-~h~~~V~~v~fsp~d~~~l 444 (519)
|+|.. .++++|.|.+|||||+..-+ .+ ..+ .|...|+-++|+| .-.+|
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli 221 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI 221 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence 99976 99999999999999985211 11 122 2889999999999 88899
Q ss_pred EEEeCCCeEEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc--ccceeEEecCC
Q 010037 445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS--TTAYLFALLGH 519 (519)
Q Consensus 445 ~sgs~Dg~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~--~~~~~~~l~GH 519 (519)
++|+.|..|++|..+..+.- ...+|.+.|+++-|+|...++++.+.|++|+|||+...+.++.- ....++-++.|
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laah 301 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH 301 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEec
Confidence 99999999999999876654 46789999999999999999999999999999999877655432 33344444433
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=198.01 Aligned_cols=252 Identities=17% Similarity=0.226 Sum_probs=212.8
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
+...+.|+...+..+.|+-+|++.++++.|.+|++|+...+. ..+++.+|...|..++.+.|...|++|+.|.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCc
Confidence 344577888899999999999999999999999999987443 4467899999999999999999999999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|.+||+.+|+....+..|...+..+.|.... ...+.++-+..+..|+.+... .+|++.+..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees----------------SVv~SgsfD~s~r~wDCRS~s--~ePiQilde 143 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES----------------SVVASGSFDSSVRLWDCRSRS--FEPIQILDE 143 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcc----------------eEEEeccccceeEEEEcccCC--CCccchhhh
Confidence 99999999999999999988888777775433 233466677788888876543 578888988
Q ss_pred cCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-e
Q 010037 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (519)
Q Consensus 387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~ 465 (519)
....|.++..... .+++|+.||++|.||++.++...-. ...+|+|++|++ ++++.++++.|++|++.|-.+++++ .
T Consensus 144 a~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 144 AKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred hcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH
Confidence 8999999987644 8999999999999999998765433 567899999999 9999999999999999999999998 4
Q ss_pred eccCCCce--EEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 466 YTDIREIV--SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 466 ~~~~~~~V--~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+.+|.+.= ...+++.....+++|+.||.|++||+.+.+++.
T Consensus 221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 77776654 445777778899999999999999998776543
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=230.53 Aligned_cols=248 Identities=24% Similarity=0.360 Sum_probs=208.5
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
...+.+|...+..++|+|+++++++|+.|++|+||++.... ...+++.+|...|++++|+|+|+++++|+.|++
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 34456788888899999999999999999999999994322 234578899999999999999999999999999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|+|||+.++++...+..+...++++.|..+... .+.++.++.+.+|+....... ++..+.++
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~----------------l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~ 331 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL----------------LVSASYDGTIRVWDLETGSKL--CLKLLSGA 331 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCCE----------------EEEcCCCccEEEEECCCCcee--eeecccCC
Confidence 999999999999999999999888888766532 234466888999988876543 34556665
Q ss_pred CCC--eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC---cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 388 ~~~--V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~---~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
... ++++.|+|++ +|++++.|+++++||+..+.++..+. |.. .+.+...++ .+.++++|+.|+.|++||+.+
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence 555 9999999999 99999999999999999999988886 555 344445566 899999999999999999998
Q ss_pred CcEE-eeccC-CCceEEEEEeeCCCEEEEEe--cCCeEEEEECC
Q 010037 461 CQVV-DYTDI-REIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK 500 (519)
Q Consensus 461 ~~~~-~~~~~-~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~ 500 (519)
+..+ .+.+| ...+..++++|..+++++++ .|+.+++|...
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7766 57777 78899999999999999998 68899999754
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=207.45 Aligned_cols=250 Identities=25% Similarity=0.365 Sum_probs=204.6
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCcccccccc-ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
.+-|..|+|||++|++|+.||.|.||++..++....- .+....|--|..+|.|+.|+.|...||+|+.||.|++|.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 3446789999999999999999999999866543221 222334667899999999999999999999999999999999
Q ss_pred Ceeeceee-ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 316 HERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
|.|+..+. .+...+.|+.|+.++...+ .++.+..+.+...+ .++.+.++.||...|+..
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiL----------------S~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQIL----------------SASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhh----------------cccccceEEEeccc----cchhHHHhcCccccccce
Confidence 99999997 6777888888877664332 23333334333333 256788999999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec--
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT-- 467 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~-- 467 (519)
.|.++| ++++++.||+|++|+.++.+|+.+|+ ...+|+++-.-|.+...++++....+|.|.++. ++++ .+.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG 433 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG 433 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence 999999 99999999999999999999999996 566899999999888999999999999999997 4554 332
Q ss_pred -cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 468 -~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
...+...+.+.+|.|.++.+.+.|+.++.|.+.+|++...
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 2345567789999999999999999999999999987653
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=5.9e-25 Score=207.86 Aligned_cols=241 Identities=21% Similarity=0.353 Sum_probs=188.8
Q ss_pred CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEecccCeeece--
Q 010037 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHERLDG-- 321 (519)
Q Consensus 247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~~~~~~~-- 321 (519)
++.+++|++||.++||+..... ...+.+|.++|.+++|.... ..|++++.|.++++|.+..+.....
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL 186 (423)
T ss_pred CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence 6899999999999999987432 24578999999988885533 3599999999999999987764322
Q ss_pred --eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc---------------------ccccc
Q 010037 322 --FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---------------------FRLLE 378 (519)
Q Consensus 322 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---------------------~~~~~ 378 (519)
...|...+.++.....+ ...+.++.+..+.+|+... .....
T Consensus 187 ~~~~GHk~~V~sVsv~~sg----------------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSG----------------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred hHhcccccceeEEEecCCC----------------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 22444444444332222 2234555566666666110 01123
Q ss_pred cceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
.|+..+.||..+|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++||..+| ..++||+|+.|..|++||.
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCC
Confidence 678899999999999999997799999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCC--cEE--eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037 459 RRC--QVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH 519 (519)
Q Consensus 459 ~~~--~~~--~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH 519 (519)
+++ .++ .+.+|.+.|.++.|+|.. .+|++|+.||++++||+++ +..++|.+.||
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-------~k~plydI~~h 388 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-------TKAPLYDIAGH 388 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-------CCCcceeeccC
Confidence 885 344 689999999999999965 5688999999999999975 33456666665
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=212.41 Aligned_cols=268 Identities=17% Similarity=0.243 Sum_probs=193.6
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+..|.+.|--+.|+++|++||+++.|.+..||.+..... +...+++.+|..+|.-+.||||.+||++|+.|..+.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 3455667777789999999999999999999999875432 344567899999999999999999999999999999
Q ss_pred EEecccCeeeceeecc-CCCCceEEEeecCCCCe--------EEeeccCCce--------eeeeeeccCCCeeEEEe---
Q 010037 310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQL--------IPIDVDKEKI--------DKTKSLRKSSDLTCVVL--- 369 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------~~~~~~~~s~~~~~~~~--- 369 (519)
+||+.++.+...+... ...+.+..|.++....+ +.++.++... .+...+.-+.++..++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999999988777554 45667777777764422 2222222211 11222222222221111
Q ss_pred CCcccccc--ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCE
Q 010037 370 PPKVFRLL--EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNY 443 (519)
Q Consensus 370 ~~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~ 443 (519)
+.++.-+. ...-..+-....+|++++.+.++ ++++.-.+..|++||+.....++.+. ....+-.-+|--.+..+
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 11111000 01111123345688888888888 77777788889999998776666553 34456666777656789
Q ss_pred EEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~ 501 (519)
+++||.|++|+||+..+++++ .+.+|...|++++|+|. ..++|+|+.||+||||-...
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999988 68999999999999995 46799999999999998764
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2.8e-24 Score=208.04 Aligned_cols=237 Identities=27% Similarity=0.474 Sum_probs=194.1
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
+...+..+.|.|+++++++++.+|.|++|++.... ....+..|...|.++.|+++++++++++.||.|++|++
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 33444568999999999999999999999998542 22356789999999999999999999988999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+++....+..+...+.++.+.+. ..++ +.+..++.+.+|+... .+++..+..|...|.+
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l--------------~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~ 182 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPD--GTFV--------------ASSSQDGTIKLWDLRT----GKCVATLTGHTGEVNS 182 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCc--CCEE--------------EEEcCCCcEEEEEccc----cccceeEecCccccce
Confidence 988877777755555666666554 1111 1222345566666543 3456677789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCC
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 470 (519)
++|+|++ .+++++.|+.|++||+++++.+..+ .|...+.+++|+| ++.++++++.||.|++||+.+++.. .+..|.
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 9999999 8999999999999999999999888 6888999999999 7888888888999999999987766 456788
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
..|.+++|+|++++|++++.||.+++|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999999999999999999999996
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=3.8e-24 Score=239.11 Aligned_cols=264 Identities=17% Similarity=0.250 Sum_probs=197.0
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccc-cccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I 308 (519)
+..|...+.+++|+|+|+++|+|+.|+.|+||+........... .....+ .+...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 44466778889999999999999999999999976421111110 111122 3456899999987 57899999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEe---------eccCCcee------------------eeeeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI---------DVDKEKID------------------KTKSLRKS 361 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------------~~~~~~~s 361 (519)
++||+.+++.+..+..+...+.++.|.+.....++.. +....... ....+.++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 9999999998888888888788887765433333322 22111100 11223455
Q ss_pred CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC------eEEEEec-CCCcEEEE
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTSV 434 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~------~~~~~~~-h~~~V~~v 434 (519)
.++.+.+|+..... .++..+.+|...|.++.|.+..+|++++.|++|+|||+..+ .++..+. |...++++
T Consensus 638 ~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 638 ADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 66677777765321 24667789999999999985559999999999999999743 4666665 88999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--------------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--------------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
+|+| ++.+|++|+.|+.|+||+......+. ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus 715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999 89999999999999999987653221 1234567999999999999999999999999996
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=5.8e-25 Score=197.29 Aligned_cols=187 Identities=21% Similarity=0.438 Sum_probs=165.8
Q ss_pred CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (519)
Q Consensus 248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~ 327 (519)
-+|++++.|.+|++|....+. +..+++...+.|+.+...|++++||+|+. ..||+||+.++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--------- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--------- 73 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------
Confidence 478999999999999987544 44567777889999999999999998875 5899999987652
Q ss_pred CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe
Q 010037 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (519)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs 406 (519)
.|+.++.+|...|+.+.|.-+| .++||+
T Consensus 74 ---------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 74 ---------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred ---------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecC
Confidence 3577899999999999999999 999999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCE
Q 010037 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG 484 (519)
Q Consensus 407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~ 484 (519)
.||+++|||++...+.+.+.|..+|++|..+| +...|++|..+|.|+|||+....+.. .......|.++...|||.+
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88899999999999999999876553 3445578999999999999
Q ss_pred EEEEecCCeEEEEECCCCe
Q 010037 485 GIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 485 l~sgs~dg~v~iwdl~~~~ 503 (519)
|+.+...|++++|++-+.+
T Consensus 182 l~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred EEEecCCccEEEEEccCCC
Confidence 9999999999999997643
No 43
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=209.15 Aligned_cols=276 Identities=19% Similarity=0.250 Sum_probs=212.8
Q ss_pred CCcceeeeecCCCceeE-EccCCCchhhhhhcccccCCCcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 010037 143 DHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK 221 (519)
Q Consensus 143 ~~~~~~~~~~d~g~~~~-~~~~~~~~~~~~~~l~~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~ 221 (519)
+...|.++|+..|...+ ++.-..-++... .-+. +.++.++.+.+-.- .+|++.+.+... .+
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl---~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~--------q~-- 77 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAASL---TALN-NEYLLSAQLKRPLL----HVWEILKKDQVV--------QY-- 77 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccchhh---hhhc-hhheeeecccCccc----cccccCchhhhh--------hh--
Confidence 45569999999999877 666644333332 1221 35555555554321 255554432211 00
Q ss_pred cccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE
Q 010037 222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (519)
Q Consensus 222 ~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS 301 (519)
......+.+++-+|.|.+|+.|+..|.|++|.+..+.. ...+.+|-.+|+|+.|+-||.+|+|
T Consensus 78 ----------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 78 ----------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHIIT 140 (476)
T ss_pred ----------cccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEEEe
Confidence 01124567889999999999999999999999886553 2346789999999999999999999
Q ss_pred EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (519)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (519)
||.||.|.+|.+..--. ... + ...+|+
T Consensus 141 gskDg~V~vW~l~~lv~-----------------a~~------------------------~------------~~~~p~ 167 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVS-----------------ADN------------------------D------------HSVKPL 167 (476)
T ss_pred cCCCccEEEEEEEeecc-----------------ccc------------------------C------------CCccce
Confidence 99999999999732110 000 0 023678
Q ss_pred eEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 382 HEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
+.+..|.-+|+++...+.| +|+|+|.|.++++||+..+..+.++.....+++++.+| .++.++.|+.+|.|.+.++
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeeh
Confidence 8999999999999998875 99999999999999999999999999999999999999 8999999999999999887
Q ss_pred CCCc-----------------EEeeccCCC--ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 459 RRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 459 ~~~~-----------------~~~~~~~~~--~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.+.. ...+.+|.+ .|++++++-||.+|++|+.||.|+|||+.+.+++..
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 5421 223667777 999999999999999999999999999998877653
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-24 Score=195.18 Aligned_cols=252 Identities=17% Similarity=0.247 Sum_probs=196.7
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+.+|..++..+.++.+|.+|.++++|..+.||-...+.. .-++.||++.|+|+....+.++|+||+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 3567888888899999999999999999999997654332 246899999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc---ccccccceeEeec
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQG 386 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~ 386 (519)
+||+.+|+++..++.+.. +..+.|.......++...-. -+....+.+++.+. -...+.|+..+..
T Consensus 78 LWDv~tGk~la~~k~~~~-Vk~~~F~~~gn~~l~~tD~~-----------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSP-VKRVDFSFGGNLILASTDKQ-----------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred EEEcCCCcEEEEeecCCe-eEEEeeccCCcEEEEEehhh-----------cCcceEEEEEEccCChhhhcccCceEEecC
Confidence 999999999888876432 33444444433222222111 11222333333321 1123567888888
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
+...++.+-|.|-+ .|++|..||.|.+||+++++.+..-. |...|+.++++| +..+|++++.|.+-++||.++-++
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence 99999999999999 99999999999999999986655443 999999999999 999999999999999999875321
Q ss_pred E--------------------------------------------------------eeccCCCceEEEEEeeCCCEEEE
Q 010037 464 V--------------------------------------------------------DYTDIREIVSAVCYCPDGKGGIV 487 (519)
Q Consensus 464 ~--------------------------------------------------------~~~~~~~~V~~v~~spdg~~l~s 487 (519)
+ ...+|-++|++++|+|+|+..++
T Consensus 225 ~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 225 LKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred EEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 1 12457788999999999999999
Q ss_pred EecCCeEEEEECCC
Q 010037 488 GTMTGNCRFYDIKG 501 (519)
Q Consensus 488 gs~dg~v~iwdl~~ 501 (519)
|+.||.|++.-...
T Consensus 305 GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCceEEEEEecc
Confidence 99999999986543
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.8e-25 Score=222.35 Aligned_cols=248 Identities=19% Similarity=0.256 Sum_probs=197.8
Q ss_pred eeccccee-ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 235 IDRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~-~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
.+.+..+. +.|..++||+++..+.+++++...... +.+.||+..|.++....+|.+|+||+.|.++++|.+
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 34444443 678999999999999999997764332 268899999999996667889999999999999988
Q ss_pred ccCe----eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc-----eeEe
Q 010037 314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-----LHEF 384 (519)
Q Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~~~~ 384 (519)
..+. +......+...+.++.++... ....+..+.+.++.+|+...-.-...+ ....
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~---------------asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLG---------------ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccC---------------ccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 4443 233334455555555553222 223345667777777776551111111 1234
Q ss_pred eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
..|...|+|++++|+. +++|||.|++.+||++.....+.++. |...|.||.|+| ..+.++++|.|++|+||.+.+..
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce
Confidence 5799999999999999 99999999999999999999999997 999999999999 89999999999999999999999
Q ss_pred EEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 463 VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 463 ~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
++. +.+|...|..+.|-.+|+.|++++.||-+++|+++++.+..
T Consensus 539 ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 539 CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 994 77799999999999999999999999999999999876643
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=195.84 Aligned_cols=263 Identities=17% Similarity=0.245 Sum_probs=197.4
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR 309 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~ 309 (519)
...|...+.+++|+-+|..|++|+.|++++||++..... .......+|.+.|-.++|+| +...|++++.|.+|+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 344556677899999999999999999999999986532 22335688999999999998 567899999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCC--------CCeEEeeccCCceeeeee-------eccCCCeeEEEeCCc--
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKTKS-------LRKSSDLTCVVLPPK-- 372 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~-- 372 (519)
+||++.+++...+......+ .+.|.+.+. ..+..+.....++..... +.-..+..+.+....
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999887776544332 233333322 222222222111110000 000011111111110
Q ss_pred cccc----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037 373 VFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 373 ~~~~----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~s 446 (519)
...+ .-+|+..+++|.....||.|+|+| +|++|+.|..|.|||+..--|++.+. +.-+|..|.|+. ++++||+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS 248 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS 248 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence 0011 247889999999999999999999 99999999999999999999999997 899999999999 9999999
Q ss_pred EeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC---------CeEEEEECC
Q 010037 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIK 500 (519)
Q Consensus 447 gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d---------g~v~iwdl~ 500 (519)
||.|..|-|=++.+|..+....+.++...++|+|...+||-++.| |.|++|-+.
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999999999999999999999999999999999987765 556666543
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.3e-25 Score=217.72 Aligned_cols=234 Identities=21% Similarity=0.312 Sum_probs=201.3
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
.++.+..|-+-.+.+++|+.|.+|+||++.+.. ..+.|.+|.+-|+|++.+|...+++|++.|-+|++||.+.
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 455556777788899999999999999998544 4467999999999999999999999999999999999976
Q ss_pred C-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 316 H-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 316 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
+ .+.+.+..|...+.+++|.|...+..+. ++.+.++.+|.... ..+..++++|...|+|+
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS---------------~sLDrTVKVWslgs----~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTFAS---------------ASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCV 189 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccceee---------------eeccccEEEEEcCC----CCCceeeeccccCcceE
Confidence 5 5777889999989999999888776654 34455666666543 45678999999999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccC
Q 010037 395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI 469 (519)
Q Consensus 395 ~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~ 469 (519)
.|-+.| +|++|+.|.+|+|||.++..|++++. |...|..+.|+| .-.++++|+.||+||||+..+-++.. +.-.
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g 268 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYG 268 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence 999977 99999999999999999999999997 999999999999 88999999999999999999877664 5555
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037 470 REIVSAVCYCPDGKGGIVGTMTGNCRF 496 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~dg~v~i 496 (519)
-+.|.+++-.+.+..+++|...|.|.+
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 678999999998888999988887644
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=7.1e-25 Score=205.68 Aligned_cols=209 Identities=21% Similarity=0.338 Sum_probs=180.5
Q ss_pred cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (519)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (519)
...+.+|.+.|.|+++.|-+.+|+||+.|++|+|||+.++++..++..+...+..+.++..++.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpY---------------- 207 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPY---------------- 207 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCce----------------
Confidence 3467899999999999999999999999999999999999999888887777777776665532
Q ss_pred eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEE
Q 010037 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV 434 (519)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v 434 (519)
.+....+..+..|+... .+.++.+.||-..|.|++.+|.- .|+||+.|.++||||+++...+.++. |..+|..|
T Consensus 208 lFs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred EEEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 23445566666666654 34578899999999999999987 99999999999999999999999997 99999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.+.| -+..+++||.|++|++||++.++.+ ....|...|.+++.+|....+|+++.| .|+-|++..+...+.
T Consensus 284 ~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 284 MCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred Eeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 9999 6667999999999999999998766 688899999999999999999999877 689999887766543
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=201.05 Aligned_cols=217 Identities=17% Similarity=0.323 Sum_probs=179.9
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCc------ccccc-----ccccccceeecCCCCEEEEEEccCCCEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK------QSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~------~~~~~-----~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (519)
++.|...+.+.+|+|||.++|+|+.|-.|+|.|++. ..... ..-...+++..|.+.|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 556777788899999999999999999999999972 11111 1123446788999999999999999999
Q ss_pred EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 300 aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
++|+.|++|+++|+......+.++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K-------------------------------------------------------- 211 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFK-------------------------------------------------------- 211 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHH--------------------------------------------------------
Confidence 999999999999986543222111
Q ss_pred ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
......+|.+|.|+|.| +|+.|....++++||+++-+|...-. |.+.|++|.+++ .+++.++|+.||.|+
T Consensus 212 ----~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 212 ----VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIK 286 (430)
T ss_pred ----HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEE
Confidence 11234679999999999 99999999999999999998876553 999999999999 999999999999999
Q ss_pred EEEcCCCcEEee--ccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037 455 IWEVRRCQVVDY--TDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 455 iwd~~~~~~~~~--~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~ 508 (519)
|||--.++++.. ..| ...|.+..|..+|+++++.+.|..+++|.+.++..++..
T Consensus 287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999988888853 233 457999999999999999999999999999998876653
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=2.5e-23 Score=204.12 Aligned_cols=246 Identities=19% Similarity=0.290 Sum_probs=195.3
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC--CcEEEEecc
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVI 314 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D--g~I~iWd~~ 314 (519)
.+.-..++|.|-++|+|...|+|+||+.......+. .+++.-.++|..|.|+++++.|+..|+- +-.+++-..
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 333467999999999999999999999875443332 3566678999999999999999887653 233333334
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
++.....+..+...+..+.+.+.. ....++++.+..+.++.-.-|+. ..++..|...|.|+
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~V 196 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCV 196 (603)
T ss_pred CCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccccccceeeE
Confidence 666666777666665555554443 33445677777887776554433 45667899999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----- 464 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~----- 464 (519)
.|+|+| ++++++.||+|.+||=.+++.+..+. |.+.|.+|+|+| |+..|++++.|.+++|||+.+.+++
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeec
Confidence 999999 99999999999999999999999986 999999999999 9999999999999999998764422
Q ss_pred ---------------------------------------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 465 ---------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 465 ---------------------------------------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
...+|...|++++.+||+++|++|+.||.|.-|+..++..-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 12457788999999999999999999999999999877654
Q ss_pred ec
Q 010037 506 DL 507 (519)
Q Consensus 506 ~~ 507 (519)
.+
T Consensus 356 ~~ 357 (603)
T KOG0318|consen 356 RL 357 (603)
T ss_pred cc
Confidence 33
No 51
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.3e-23 Score=217.17 Aligned_cols=208 Identities=21% Similarity=0.263 Sum_probs=161.4
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCcccccccc------ccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVW 311 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iW 311 (519)
.....++++..+++++.+.....|+...+...+.. ......+.+|.+.|++++|+| ++++|++|+.|++|+||
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 33456667666666666666666765432211100 011234789999999999999 88999999999999999
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
|+.++..... ...++..+.+|...|
T Consensus 104 di~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~V 128 (493)
T PTZ00421 104 GIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKKV 128 (493)
T ss_pred ecCCCccccc-------------------------------------------------------cCcceEEecCCCCcE
Confidence 9865431100 013356678999999
Q ss_pred eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec
Q 010037 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT 467 (519)
Q Consensus 392 ~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~ 467 (519)
.+++|+|.+ +|++++.|++|+|||+.+++.+..+. |...|++++|+| ++.+|++++.|++|+|||+++++.+ .+.
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 999999975 89999999999999999999888886 899999999999 9999999999999999999998877 455
Q ss_pred cCCCc-eEEEEEeeCCCEEEEEe----cCCeEEEEECCCC
Q 010037 468 DIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKGM 502 (519)
Q Consensus 468 ~~~~~-V~~v~~spdg~~l~sgs----~dg~v~iwdl~~~ 502 (519)
.|... +..+.|.+++..+++++ .|+.|++||+++.
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 66554 45788999988887754 4789999999864
No 52
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.8e-23 Score=180.73 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=191.1
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----c----ccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----S----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----~----~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
..+.+++|+|.|.+.|+|+..++++|-.+........ . ....+.-+.|.+.|.|.+|+|+|.+||+|+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 3456789999999999999999999987653222110 1 1112334679999999999999999999999999
Q ss_pred EEEEecccCeee-----ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037 308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (519)
Q Consensus 308 I~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (519)
|++..+....+. ..+..+...+.-+.|.......- ......+..+..+++.+... +.+++
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~-----------~il~s~gagdc~iy~tdc~~----g~~~~ 177 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG-----------AILASAGAGDCKIYITDCGR----GQGFH 177 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc-----------eEEEecCCCcceEEEeecCC----CCcce
Confidence 999877554432 23444555555555544332211 11112233333444443332 56788
Q ss_pred EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (519)
.+.+|.+-|..+ ++-++ .+++|+.|++|++||++-..++.++. .+..|.+++..| .+++|++|-.|...
T Consensus 178 a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC 255 (350)
T ss_pred eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence 999999999987 34456 99999999999999999999999885 246799999999 99999999999999
Q ss_pred EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.+||++.++++ .+..|...|.++.|+|...++++++.|..|++-|+.+.
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999988 58889999999999999999999999999999999864
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=209.23 Aligned_cols=202 Identities=21% Similarity=0.335 Sum_probs=172.8
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd 312 (519)
..+.+.++.|..||.+||+|...|.|+|+|++... ....+.+|+.+|..+.|+| ++..|++|++|+.+++||
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 34667778999999999999999999999955311 2245789999999999999 456888999999999999
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
+.+... ...+.+|+..|.
T Consensus 140 ~s~a~v--------------------------------------------------------------~~~l~~htDYVR 157 (487)
T KOG0310|consen 140 LSTAYV--------------------------------------------------------------QAELSGHTDYVR 157 (487)
T ss_pred cCCcEE--------------------------------------------------------------EEEecCCcceeE
Confidence 976541 234678999999
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEe-ec
Q 010037 393 DLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YT 467 (519)
Q Consensus 393 ~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~-~~ 467 (519)
|.+|+|.. .++||+.||+|++||+++. ..+..+.|..+|-.+.+-| .|..+++++. ..|+|||+-++ +.+. ..
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~ 235 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMF 235 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhh
Confidence 99999976 8999999999999999987 8888999999999999999 8899998874 58999999965 4443 45
Q ss_pred cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
.|...|||+++..++..|++|+-|+.|++||+.+.+++.
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred cccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 599999999999999999999999999999988777653
No 54
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.2e-23 Score=217.29 Aligned_cols=216 Identities=17% Similarity=0.289 Sum_probs=163.4
Q ss_pred CCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCcccccccc-ccccceeecCCCCEEEEEEccCCCE-EEEEeCC
Q 010037 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGED 305 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~D 305 (519)
..+.+|...+.+++|+|+ +.+||+|+.||+|+||++......... ......+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 345667788889999997 789999999999999999754321111 1122357899999999999998875 5799999
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
++|+|||+.+++... .+.
T Consensus 148 gtIrIWDl~tg~~~~--------------------------------------------------------------~i~ 165 (568)
T PTZ00420 148 SFVNIWDIENEKRAF--------------------------------------------------------------QIN 165 (568)
T ss_pred CeEEEEECCCCcEEE--------------------------------------------------------------EEe
Confidence 999999998765321 112
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEE-----EEEeeCCCCEEEEEeCCC----eEE
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KVR 454 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~-----v~fsp~d~~~l~sgs~Dg----~V~ 454 (519)
|...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |.+.+.+ ..|++ ++.+|++++.|+ +|+
T Consensus 166 -~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 166 -MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMK 243 (568)
T ss_pred -cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEE
Confidence 44679999999999 88999999999999999999988886 7765443 33457 788899888774 799
Q ss_pred EEEcCC-CcEEeeccCC---CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037 455 IWEVRR-CQVVDYTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 455 iwd~~~-~~~~~~~~~~---~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~ 508 (519)
|||+++ .+++....+. +.+......++|.++++|+.|+.|++|++..+.+..+.
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 999995 4555433332 33333334556899999999999999999877655543
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=222.43 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=171.1
Q ss_pred eEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc---------------------------c--cc-----------
Q 010037 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E--LS----------- 272 (519)
Q Consensus 233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~---------------------------~--~~----------- 272 (519)
.|.+.|-++.|++||+|||+|+.|+.|+||.+..... . ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5677777899999999999999999999998876000 0 00
Q ss_pred --c-----------ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCC
Q 010037 273 --S-----------LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339 (519)
Q Consensus 273 --~-----------~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (519)
. -.+...|.||.+.|..|.||.++ +|+|++.|.+||+|++...+|+..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence 0 00123588999999999999765 8999999999999999877764433
Q ss_pred CCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC
Q 010037 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG 417 (519)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~ 417 (519)
.|...|+|++|+|.. ++++|+.|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 389999999999965 99999999999999999
Q ss_pred CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---e-------ccCCCceEEEEEeeCC-CEEE
Q 010037 418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---Y-------TDIREIVSAVCYCPDG-KGGI 486 (519)
Q Consensus 418 ~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---~-------~~~~~~V~~v~~spdg-~~l~ 486 (519)
..+.+........|++++|.| +|++.+.|+.+|.+++|+....+.+. . ..+. .||.+.|.|.. ..|+
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVL 518 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEE
Confidence 999888888779999999999 89999999999999999999877652 1 1233 79999999844 4588
Q ss_pred EEecCCeEEEEECCCCeeee
Q 010037 487 VGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 487 sgs~dg~v~iwdl~~~~l~~ 506 (519)
+.+.|..|||||+++.+++.
T Consensus 519 VTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred EecCCCceEEEeccchhhhh
Confidence 88999999999997665543
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=9.4e-24 Score=198.92 Aligned_cols=262 Identities=13% Similarity=0.187 Sum_probs=195.0
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+++|.+.|.++.|+.+|.+||+|..+|.|+||+..++..... +..--..|.-|.|+|.+..|+.|+.||.|-
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~-------~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK-------LDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE-------eecccCceEEEEecccccEEEeecCCCcEE
Confidence 4677889999999999999999999999999999986654332 223446788999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEe--------eccCCce-------------------eeeeeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKI-------------------DKTKSLRKSS 362 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------------------~~~~~~~~s~ 362 (519)
+|.+.++...+.+..+..+.++-.|.+.+...+... ....... .....+.++.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 999999877788888777777766666532221111 1100000 0001112222
Q ss_pred CeeEEEeCCcccccc---c-cceeEeeccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEE
Q 010037 363 DLTCVVLPPKVFRLL---E-KPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~---~-~~~~~~~~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v 434 (519)
++.+++......+.. . ........+...+.|+.+.|.. +.++|+.||+|.|||+...++.+.+.|...|+.+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 222222222211110 0 0111112455566677766654 7789999999999999999999999999999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.|-+ ..+|++++.+|+|++||.++++++ .+.+|...|.+++++|+++++++++.|++.+||++.
T Consensus 334 ~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9987 678999999999999999999988 699999999999999999999999999999999874
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=3.5e-24 Score=192.32 Aligned_cols=202 Identities=20% Similarity=0.337 Sum_probs=178.4
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
|..-|.+++|+.|.++|++|+.+..++|++++...... .++.+|++.|..+.|....+.++++++|++||+||.
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 33455568999999999999999999999998655433 467899999999999998889999999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.++...+.+.. +..|++
T Consensus 173 rTgt~v~sL~~---------------------------------------------------------------~s~VtS 189 (334)
T KOG0278|consen 173 RTGTEVQSLEF---------------------------------------------------------------NSPVTS 189 (334)
T ss_pred ccCcEEEEEec---------------------------------------------------------------CCCCcc
Confidence 99987655432 456889
Q ss_pred EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCC
Q 010037 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE 471 (519)
Q Consensus 394 l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~ 471 (519)
+.++++|.+++...-+.|++||..+..+++.+..+..|.+..++| +..++++|+.|..++.||..++.-+. ..+|.+
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 999999988888888999999999999999999999999999999 77999999999999999999998773 388999
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
+|.++.|+|||...++|+.||+|+||.+.-++-.
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999998765543
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=192.64 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=173.8
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc-cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (519)
..+.+|++.|+.+.|+|+|.+|||||.|..|.+|++. ..+....++.+...+..+.+..+. ..
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~----------------s~ 104 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG----------------SH 104 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC----------------CE
Confidence 3478999999999999999999999999999999964 334444555666655555554443 23
Q ss_pred eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEE
Q 010037 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434 (519)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v 434 (519)
.+..+.+..+..|+..+ ++.++.+++|..-|+.+.-+.-| ++.+++.|++++|||+++..+++++.....++++
T Consensus 105 i~S~gtDk~v~~wD~~t----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv 180 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAET----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAV 180 (338)
T ss_pred EEEecCCceEEEEeccc----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEE
Confidence 35567788888888876 56688899999999999855556 8889999999999999999999999999999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.|.. .+..+++|+.|+.|++||++..... .+.+|.++|+.+..+|+|.++.+-+.|.++++||++-
T Consensus 181 ~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 181 GFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred Eecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 9998 8899999999999999999998877 5889999999999999999999999999999999973
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3e-23 Score=213.94 Aligned_cols=256 Identities=19% Similarity=0.293 Sum_probs=203.8
Q ss_pred hccccccccCC----eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC
Q 010037 220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (519)
Q Consensus 220 ~~~~w~~~~~~----~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (519)
+...|.-+.++ +..|..+|..++|||.+.++++|+.|-.|+||+++..+.. .++.||-+-|..+.|++.
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe 104 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE 104 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence 34456555554 4567888889999999999999999999999999866543 358899999999999999
Q ss_pred CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (519)
Q Consensus 296 g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (519)
-.+++|++.|.+|+||++++.+++..+..|...+.|..|.+..... ++++.+-++.+|+....+
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI----------------VSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI----------------VSASLDQTVRVWDISGLR 168 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE----------------EEecccceEEEEeecchh
Confidence 9999999999999999999999999999999988888887754322 223333344444432111
Q ss_pred c---------------------c----ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE---ec
Q 010037 376 L---------------------L----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---FS 426 (519)
Q Consensus 376 ~---------------------~----~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~---~~ 426 (519)
. - .-..+.+.||...|+-++|+|.- .+++|+.|..|++|.++..+.-.. ..
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg 248 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG 248 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence 1 0 01245688999999999999998 999999999999999876554322 24
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
|...|.++-|+| ..+++++.+.|++|+|||+...+.++ +....+..+.++-+|..++++.|. |+-+.+|.+.
T Consensus 249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 999999999999 89999999999999999999988874 555677889999999999777665 5455566654
No 60
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.7e-22 Score=211.78 Aligned_cols=187 Identities=18% Similarity=0.322 Sum_probs=152.0
Q ss_pred eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCce
Q 010037 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC 331 (519)
Q Consensus 253 gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 331 (519)
|+.++.|++|+..... ....+.+|.++|.+++|+|+ +.+||||+.||+|+|||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------- 112 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----------
Confidence 6678899999876432 23457899999999999996 78999999999999999975431000
Q ss_pred EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCC
Q 010037 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK 409 (519)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg 409 (519)
....++..+.+|...|.+++|+|++ .|++++.|+
T Consensus 113 --------------------------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 113 --------------------------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred --------------------------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 0012244567899999999999988 567999999
Q ss_pred cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEE-----EEEeeCCC
Q 010037 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDGK 483 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~-----v~~spdg~ 483 (519)
+|+|||+++++.+..+.|...|++++|+| ++.+|++++.|++|+|||+++++.+ .+..|.+.+.. ..|++++.
T Consensus 149 tIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred eEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 99999999999888888888999999999 9999999999999999999999877 46677765443 23458999
Q ss_pred EEEEEecCC----eEEEEECCC
Q 010037 484 GGIVGTMTG----NCRFYDIKG 501 (519)
Q Consensus 484 ~l~sgs~dg----~v~iwdl~~ 501 (519)
+|++++.++ .|+|||+++
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCC
Confidence 999988775 799999985
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.9e-24 Score=190.26 Aligned_cols=239 Identities=18% Similarity=0.243 Sum_probs=192.5
Q ss_pred ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 010037 236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~ 313 (519)
|..-.++|+++. +.+++++.||.+++||...... +.+.++.|...|.++.|++ ++..+++++-|++|++|+.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 334457888864 5778899999999999765443 3346788999999999999 5667888899999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
..++.+.++..+..-+....|.+...+.+. ..+.++.+.+|+.+. .++++. +..|...|+|
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa---------------s~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~ 195 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFA---------------SASGDGTLRLWDVRS---PGKFMS-IEAHNSEILC 195 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCCCCeEE---------------EccCCceEEEEEecC---CCceeE-EEeccceeEe
Confidence 988888888776666656666666554433 456777888888543 355555 8889999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eec
Q 010037 394 LSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT 467 (519)
Q Consensus 394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~ 467 (519)
+.|++-+ .|+||+.|+.|+.||++.- .++..+ .|.-.|..|+|+|....+|++++.|=++||||...+.-. ...
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 9999976 9999999999999999874 455555 499999999999988889999999999999999865433 466
Q ss_pred cCCCceEEEEEee-CCCEEEEEecCCeEEEEEC
Q 010037 468 DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 468 ~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl 499 (519)
.|..-|..+.|++ ++.++|..+.|+.++||+.
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeecc
Confidence 7888899999998 6678999999999999984
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=3.3e-23 Score=210.63 Aligned_cols=237 Identities=22% Similarity=0.429 Sum_probs=186.6
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc----
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE---- 315 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~---- 315 (519)
+..|-|.++++++|...|.+.|+++... ....++.+|++.|+.|+.+||+..++|||.|.+|++||+.-
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASA-------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehh-------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 4679999999999999999999998732 33445789999999999999999999999999999999732
Q ss_pred -Ceeeceeecc-------CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 316 -HERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 316 -~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
+...+.+... +..+.|+.++|+.. +.++.+ .+.++.++-...+ +....+.||
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVsL--------------LdnTVkVyflDtl----KFflsLYGH 549 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVSL--------------LDNTVKVYFLDTL----KFFLSLYGH 549 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEEe--------------ccCeEEEEEecce----eeeeeeccc
Confidence 1111111111 12233444443332 222111 1223333322222 335678999
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~- 464 (519)
.-+|.||..+|++ .++|||.|++|++|-+.-|.|.+.+ .|.+.|.+|.|-| ...+|.+++.|+.|+-||-.+...+
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhhe
Confidence 9999999999999 9999999999999999999998877 5999999999999 8999999999999999999987766
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
.+.+|...|++++.+|+|.++++++.|.+|++|....-.+
T Consensus 629 ~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred eeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 6889999999999999999999999999999999765443
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.9e-23 Score=184.14 Aligned_cols=206 Identities=19% Similarity=0.393 Sum_probs=175.8
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (519)
..+..|+++|..+.|+-||+|.++|+.|.+|++|+...+.+++++..+...+.-.....+ ....
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------nskf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------NSKF 74 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc----------------cccc
Confidence 457889999999999999999999999999999999999999998877665544433322 2334
Q ss_pred eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEec-CCCcEEE
Q 010037 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTS 433 (519)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~-h~~~V~~ 433 (519)
..++.+..+.+|+... ++.++.+.+|.+.|+.++|+.+. .+++|+.|.+|++||.++. ++++++. ..+.|.+
T Consensus 75 ~s~GgDk~v~vwDV~T----Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNT----GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred ccCCCCceEEEEEccc----CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 5677888999999887 45688999999999999999988 9999999999999998764 6777776 7788999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
|..+ +..+++|+.||++|.||++.++... .....+|++++|++||+.+++++.|+++++.|-.+|++.+.
T Consensus 151 i~v~---~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred EEec---ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 9985 5789999999999999999998772 22356899999999999999999999999999999988654
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=212.14 Aligned_cols=239 Identities=21% Similarity=0.336 Sum_probs=198.7
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
.+.+..|+ +.++++++.+++|++|+......... .+.+|.+.|+++++..-+.+|++|+.|.++++||..++
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceEEEe------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 33345566 77899999999999999875544322 37899999999999887889999999999999999999
Q ss_pred eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (519)
++...+..+...+.++.... .....++.+.++.+|+... +..++.+.+|.++|.++..
T Consensus 282 ~C~~~l~gh~stv~~~~~~~------------------~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDP------------------FLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred cEEEEecCCCceEEEEEccC------------------ceEeeccCCceEEEEeccC----cceEEEeccccccEEEEEe
Confidence 99999987777666554322 2234477888898888873 5567888889999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEE-eeccCCCce
Q 010037 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREIV 473 (519)
Q Consensus 397 sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~-~~~~~~~~V 473 (519)
+ ..++++|+.|++|++||+.++++++.+. |...|+++.+.+ . .++++|+.|++|++||+++. +++ .+..|...+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 8 4499999999999999999999999997 999999998865 3 89999999999999999999 777 577777777
Q ss_pred EEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT 510 (519)
Q Consensus 474 ~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~ 510 (519)
..+.+ .++.|++++.||.|++||..++++.+.-..
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 55544 677999999999999999999887765444
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=6.6e-23 Score=198.52 Aligned_cols=216 Identities=19% Similarity=0.297 Sum_probs=176.6
Q ss_pred cccCCeeeEeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEe
Q 010037 226 KKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG 303 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs 303 (519)
++-..+.+|.+....++|++... .|++|+.|++|.+||+.....+-........+.+|...|..++|++ +...|++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 33445677777566688888654 7889999999999999876665333444556899999999999999 567899999
Q ss_pred CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (519)
Q Consensus 304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (519)
.|+.+.|||++++. .++.+.
T Consensus 248 dd~~L~iwD~R~~~------------------------------------------------------------~~~~~~ 267 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNT------------------------------------------------------------SKPSHS 267 (422)
T ss_pred CCCeEEEEEcCCCC------------------------------------------------------------CCCccc
Confidence 99999999998632 123445
Q ss_pred eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
..+|.+.|.|++|+|-+ .||||+.|++|+|||++.- +++.++. |...|.+|.|+|.....||+++.|+.+.|||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 67899999999999977 9999999999999999874 4566665 999999999999889999999999999999986
Q ss_pred CC-c--------------EEeeccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECCC
Q 010037 460 RC-Q--------------VVDYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 460 ~~-~--------------~~~~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~~ 501 (519)
.- + +....+|...|..+.|+|...+ |++.+.|+.+.||.+..
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 41 1 1245688999999999998765 66788999999999874
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-22 Score=203.90 Aligned_cols=238 Identities=17% Similarity=0.329 Sum_probs=199.3
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
.+.+.++.|+++|.+||+|..+|.|.|||....+.. ..+.+ |...|-+++|+ +..|.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 356778999999999999999999999998754432 33556 99999999998 678999999999999999
Q ss_pred ccCeeece-eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
+..+.... +..|...+-.+.|+.+. .....++.+..+.+|+. ....++..+..|.+.|.
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~----~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDG----LSPEPKFTFTEHTAAVK 347 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccC----CCccccEEEeccceeee
Confidence 88876655 55566666566665544 23456778888999988 33567888999999999
Q ss_pred EEEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCCcEE-e
Q 010037 393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVV-D 465 (519)
Q Consensus 393 ~l~~sp~~--~L~sgs--~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~s--gs~Dg~V~iwd~~~~~~~-~ 465 (519)
.++|+|-. +||+|+ .|++|++||+.++..+........|.+|.|++ ..+-|++ |..+..|.||+..+.+.+ .
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeee
Confidence 99999965 888874 79999999999999999999999999999999 5554554 345778999999997766 6
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8999999999999999999999999999999998763
No 67
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=196.45 Aligned_cols=249 Identities=16% Similarity=0.262 Sum_probs=196.3
Q ss_pred cCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
.+.+.+|.++|.+++=+|.. ..+|+|+.||.|+|||+.... +...+.+|.+.|..|++.. ..++++|.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecCCc
Confidence 45689999999999999998 789999999999999987433 4456899999999999986 5688999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
+|+.|.+... .+.++.... .+..++ .........+....+-+|+... ..|+..+.-
T Consensus 130 tvK~wk~~~~-p~~tilg~s--------------~~~gId-----h~~~~~~FaTcGe~i~IWD~~R----~~Pv~smsw 185 (433)
T KOG0268|consen 130 TVKQWKIDGP-PLHTILGKS--------------VYLGID-----HHRKNSVFATCGEQIDIWDEQR----DNPVSSMSW 185 (433)
T ss_pred ceeeeeccCC-cceeeeccc--------------cccccc-----cccccccccccCceeeeccccc----CCccceeec
Confidence 9999998552 222221100 000000 0011112233344566666643 467778887
Q ss_pred cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-E
Q 010037 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-V 463 (519)
Q Consensus 387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~ 463 (519)
....|.++.|+|.. .|++|..|+.|.|||++++.+++.+...-.-+.|+|+| ....|.+|+.|..++.||++.-+ .
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP 264 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhccc
Confidence 88899999999977 88899999999999999999999988778889999999 88899999999999999999754 3
Q ss_pred E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT 510 (519)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~ 510 (519)
+ ...+|...|..+.|+|.|+-+++|+.|.+|+||.+..++.-++...
T Consensus 265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence 3 5788999999999999999999999999999999988765554433
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=6.7e-24 Score=198.34 Aligned_cols=251 Identities=20% Similarity=0.362 Sum_probs=193.0
Q ss_pred hhhhhhcccccccc----CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEE
Q 010037 215 DAKRKVKRGWLKKL----GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM 290 (519)
Q Consensus 215 ~~~~~~~~~w~~~~----~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l 290 (519)
+.+-...+.|.+.. ..+.+|...+-| +.-+.+.+++|+.|.+|+|||++.+. +.+++.+|...|..+
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLC--Lqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHTGSVLC--LQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHL 283 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCCCcEEe--eeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEE
Confidence 34444556776654 335666665554 44566799999999999999998554 345678899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecccCeee---ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037 291 KFSLDGQYLASGGEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (519)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 367 (519)
.|+ ..+++|++.|.+|.+||+.....+ ..+..+...+..+ .++. ...++++++.++.
T Consensus 284 rf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-------------dfd~-----kyIVsASgDRTik 343 (499)
T KOG0281|consen 284 RFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-------------DFDD-----KYIVSASGDRTIK 343 (499)
T ss_pred EEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-------------cccc-----ceEEEecCCceEE
Confidence 997 459999999999999999765422 2222222222222 2221 2456778888888
Q ss_pred EeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~s 446 (519)
+|+..+. ..+.++.+|...|.|+.+... ++++|+.|.+|++||+.+|.+++.+. |..-|.||.| +...+++
T Consensus 344 vW~~st~----efvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVS 415 (499)
T KOG0281|consen 344 VWSTSTC----EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVS 415 (499)
T ss_pred EEeccce----eeehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeee
Confidence 8887763 457889999999999987422 89999999999999999999999996 9999999999 5678999
Q ss_pred EeCCCeEEEEEcCCCcE---------E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 447 GSIDGKVRIWEVRRCQV---------V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 447 gs~Dg~V~iwd~~~~~~---------~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
|..||+|+|||+..+.- + ....|.+.|..+.| |...+++++.|.+|.|||.-++.-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 99999999999987532 1 45678889999998 667899999999999999876543
No 69
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=182.29 Aligned_cols=258 Identities=18% Similarity=0.229 Sum_probs=197.2
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I 308 (519)
.+.|.+.+..+...-.|+.||+++.|++|+|+.+..... .+...+|.||.+||+.++|.. -|.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 456778888888888999999999999999999986553 234457899999999999966 89999999999999
Q ss_pred EEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.||.-..++ .......+...+.++.+.+.....++++....+.+... .++.... .........
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl------------~~~~~g~---w~t~ki~~a 147 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL------------TYDSSGG---WTTSKIVFA 147 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE------------EEcCCCC---ccchhhhhc
Confidence 999988774 33455667778889999998877776655444433221 1111100 011234577
Q ss_pred cCCCeeEEEEcCCC---------------eEEEEeCCCcEEEEECCCCeEE--EEe-cCCCcEEEEEEeeCCC---CEEE
Q 010037 387 HSSEVLDLSWSKNG---------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI 445 (519)
Q Consensus 387 h~~~V~~l~~sp~~---------------~L~sgs~Dg~V~lWdl~~~~~~--~~~-~h~~~V~~v~fsp~d~---~~l~ 445 (519)
|.-.|++++|.|-. .|++|+.|..|+||+...++.+ +++ .|.+.|+.++|.|..+ .+++
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 99999999999851 5999999999999999887433 223 3999999999999432 4899
Q ss_pred EEeCCCeEEEEEcCCC----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC-Ceeeec
Q 010037 446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG-MQIFDL 507 (519)
Q Consensus 446 sgs~Dg~V~iwd~~~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~-~~l~~~ 507 (519)
++++||+|.||-.+.. +...+......+..+.|++.|+.|++++.|+.|.+|.-.. |+-+++
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence 9999999999987732 1112445678899999999999999999999999997543 344443
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=4.8e-23 Score=201.54 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=174.3
Q ss_pred cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
.+.-.+.++...|.++++.|.|-.+++|+.|..|++||+......+..+...+.-.. ..|+++.|++.|..|+..+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEecC
Confidence 344456677778888999999999999999999999999977766555444333333 469999999999988888888
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
..++|+|-...+.......... -..+..-+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQY--------------------------------------------------I~Dm~nTK 265 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQY--------------------------------------------------IRDMYNTK 265 (641)
T ss_pred cceeEEccCCceeeeeeccchh--------------------------------------------------hhhhhccC
Confidence 8999999754443222211000 01133457
Q ss_pred ccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw 456 (519)
||...++|.+|+|.. .++|++.|+++||||+... +.++++. ..-.++.++|+| ++..||+|+.||.|.+|
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeee
Confidence 899999999999987 9999999999999999764 4445554 345789999999 99999999999999999
Q ss_pred EcCCCcEE----eeccCCC--ceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 457 EVRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 457 d~~~~~~~----~~~~~~~--~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+.....+. ....|.. .|++|.|++||++|++-+.|+++++||++..
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 98654322 2344554 8999999999999999999999999999853
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.7e-22 Score=194.23 Aligned_cols=253 Identities=22% Similarity=0.305 Sum_probs=202.7
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccc--cc--------ccccccee-ecCCCCEEEEEEccCC
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LS--------SLYTGQEF-LAHEGSILTMKFSLDG 296 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~--~~--------~~~~~~~l-~~H~~~I~~l~fspdg 296 (519)
+..+..|.-.+.+++++|++++.++++.+++|.=|++..+... +. .....+.- .+|.+.|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4456667778888999999999999999999999998766533 11 01111112 3899999999999999
Q ss_pred CEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (519)
Q Consensus 297 ~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (519)
+|||+|+.|..|.||+.++.+.++.+..+...+.++.|-..... .+..+.+..+.+|+...+.+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------LYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc----------------eeeeecCCceEEEehhHhHH
Confidence 99999999999999999999999988888888877777544322 23455666777777665543
Q ss_pred cccceeEeeccCCCeeEEEEcCCCeEE-EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037 377 LEKPLHEFQGHSSEVLDLSWSKNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (519)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~~~L~-sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i 455 (519)
+.++.+|.+.|..|....-..++ .|+.|+++++|++.....+.-..+.+.+-|++|- +...|++|+.+|.|.+
T Consensus 279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL 352 (479)
T ss_pred ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence 56789999999999988777555 5559999999999766666666688899999997 5788999999999999
Q ss_pred EEcCCCcEEee--cc-----------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 456 WEVRRCQVVDY--TD-----------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 456 wd~~~~~~~~~--~~-----------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
|++.+.+++.. .. ++.+|++++..|...++++|+.+|.|++|-+.++
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99998877631 11 1238999999999999999999999999999987
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=193.85 Aligned_cols=239 Identities=18% Similarity=0.278 Sum_probs=189.2
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
.+++.+....+..+.|.+++.++++++.|+.+++|++.... ...+|.+|++.|+++.|......+++|+.|.+
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-------hhhhhcccccceeeehhhccccceeeccccch
Confidence 34566666778889999999999999999999999988433 33468899999999999987767999999999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|++||+....|.+++....... .+... ....+.+..+..+.+|+.+.. .+......+
T Consensus 285 iK~WDl~k~~C~kt~l~~S~cn---DI~~~----------------~~~~~SgH~DkkvRfwD~Rs~----~~~~sv~~g 341 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLPGSQCN---DIVCS----------------ISDVISGHFDKKVRFWDIRSA----DKTRSVPLG 341 (459)
T ss_pred hhhhhhhhhheecccccccccc---ceEec----------------ceeeeecccccceEEEeccCC----ceeeEeecC
Confidence 9999999988776653322111 11000 122344555666777776542 334445555
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
. .|+++..++++ .|++++.|.++.+.|+++.....++. ....++.++|+| ++.|+++|+.||.|+||++.++
T Consensus 342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCc
Confidence 4 89999999999 99999999999999999999988885 344589999999 9999999999999999999999
Q ss_pred cEEe-ec--cCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 462 QVVD-YT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 462 ~~~~-~~--~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
++.. .. .....|++++|+|.|.+|++++.++.+.+|.
T Consensus 420 KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8774 22 2333699999999999999999999999993
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2.8e-22 Score=194.18 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=179.1
Q ss_pred EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccc---cccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcE
Q 010037 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV 308 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I 308 (519)
|...|+.+..-|... .+|+++..+.|.|||+.+...... .......+.+|++.-..|.|++.. -+|++|+.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 344455566667655 556688899999999986554332 223334789999988899999954 489999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (519)
++||+........ ...+...+.+|.
T Consensus 203 ~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 203 CLWDINAESKEDK-------------------------------------------------------VVDPKTIFSGHE 227 (422)
T ss_pred EEEeccccccCCc-------------------------------------------------------cccceEEeecCC
Confidence 9999965432100 013356688999
Q ss_pred CCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--
Q 010037 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (519)
Q Consensus 389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~--~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-- 461 (519)
..|.+++|++.. ++++++.|+.+.|||+++ .++.+.. .|...|+|++|+|.++.+||+|+.|++|++||+|+-
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 999999999976 999999999999999995 4444444 399999999999999999999999999999999984
Q ss_pred cEEeeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeee------ccccceeEEecCC
Q 010037 462 QVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFD------LSTTAYLFALLGH 519 (519)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~------~~~~~~~~~l~GH 519 (519)
.+..+..|...|..|.|+|.. ..||+++.|+.+.|||+..-.-.+ -.+-+.+|...||
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc
Confidence 344789999999999999965 578889999999999997422111 2344567888888
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=195.51 Aligned_cols=194 Identities=23% Similarity=0.354 Sum_probs=170.0
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
+...|....+++|+.|..+.++|..... ....+.||...|+.+.|+|+...+++++.|..|+||.+.....
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 4455556899999999999999987433 3356899999999999999999999999999999999754331
Q ss_pred eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (519)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 400 (519)
......|..+|+.+..+|.|
T Consensus 296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence 12245689999999999999
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEecCC---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEE
Q 010037 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (519)
Q Consensus 401 -~L~sgs~Dg~V~lWdl~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~ 475 (519)
||++++.|++..+.|++++.++....+. -.+++.+||| ||.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999999999999999999888764 3489999999 9999999999999999999988766 68899999999
Q ss_pred EEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 476 VCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 476 v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
++|+.+|.+|++++.|+.|++||++..+.
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcc
Confidence 99999999999999999999999986554
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=4e-23 Score=201.08 Aligned_cols=170 Identities=26% Similarity=0.513 Sum_probs=154.3
Q ss_pred ccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037 276 TGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (519)
....+.+|+..|.++.|.| .+.+|++|+.|+.|+||++....
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------------------------- 248 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------------------------- 248 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------------------------------
Confidence 3456889999999999999 89999999999999999985521
Q ss_pred eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEE
Q 010037 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS 433 (519)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~ 433 (519)
..++++.+|..+|.+++|+++| .+++++.|+.|++||+++|+++..|.....++|
T Consensus 249 ------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~c 304 (503)
T KOG0282|consen 249 ------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTC 304 (503)
T ss_pred ------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCcee
Confidence 2367789999999999999999 999999999999999999999999999999999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+.|+|.+.+.|++|+.|+.|+.||++++++++ +..|-+.|..+.|-++|+++++.+.|++++||+....-.++
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 99999555999999999999999999999884 67788999999999999999999999999999998664443
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=4.4e-22 Score=208.01 Aligned_cols=240 Identities=22% Similarity=0.387 Sum_probs=202.2
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
+.+|.+.+.++++...+..|++|+.|.+++|||...+. +...+.+|...|.++... +.++++|+.|.+|++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 56677888888998889999999999999999987544 445688999999999875 557889999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
|++.++.++..+..+...+.++... ....+.++.++.+.+|+... .++++.+.+|...
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR 373 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence 9999999988887766666666544 12335677778899998884 5779999999999
Q ss_pred eeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-
Q 010037 391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT- 467 (519)
Q Consensus 391 V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~- 467 (519)
|.++.+.+..++++|+.|++|++||+.+. +|+.++. |...|..+.+ .+++|++++.|++|++||..+++++...
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence 99999888569999999999999999999 9999987 7777877776 5689999999999999999999988543
Q ss_pred c-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 468 D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 468 ~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
. +...|+++++. ...+++++.||.+++||++++++..
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 3 45788888876 4578999999999999999988765
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.5e-21 Score=216.51 Aligned_cols=223 Identities=15% Similarity=0.247 Sum_probs=170.6
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee--------ceeeccCC
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL--------DGFDVQDT 327 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~--------~~~~~~~~ 327 (519)
+|.+++|+....... .......+..|.+.|.+++|+|+|++||+|+.|+.|+||++...... ..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVK--ADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS 533 (793)
T ss_pred hhhhhhhcccceEEE--EeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence 677888887643321 11222346679999999999999999999999999999997542100 0000 011
Q ss_pred CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-CC-eEEEE
Q 010037 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSS 405 (519)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~-~L~sg 405 (519)
.+..+.|.+.. ....+.++.++.+.+|+... .+.+..+.+|...|++++|+| ++ +|++|
T Consensus 534 ~v~~l~~~~~~---------------~~~las~~~Dg~v~lWd~~~----~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 534 KLSGICWNSYI---------------KSQVASSNFEGVVQVWDVAR----SQLVTEMKEHEKRVWSIDYSSADPTLLASG 594 (793)
T ss_pred ceeeEEeccCC---------------CCEEEEEeCCCeEEEEECCC----CeEEEEecCCCCCEEEEEEcCCCCCEEEEE
Confidence 11222222111 12235666788888888764 345677889999999999997 55 99999
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--EEeeccCCCceEEEEEeeCCC
Q 010037 406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGK 483 (519)
Q Consensus 406 s~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spdg~ 483 (519)
+.|++|++||++++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+ ...+..|...|+++.|. ++.
T Consensus 595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS 673 (793)
T ss_pred cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC
Confidence 999999999999999998888778899999976579999999999999999998865 23577899999999997 788
Q ss_pred EEEEEecCCeEEEEECCC
Q 010037 484 GGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 484 ~l~sgs~dg~v~iwdl~~ 501 (519)
+|++++.|+.|+|||+..
T Consensus 674 ~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 674 TLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EEEEEECCCEEEEEeCCC
Confidence 999999999999999974
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.4e-21 Score=178.61 Aligned_cols=232 Identities=20% Similarity=0.291 Sum_probs=182.8
Q ss_pred eEEeeecCCeEEEeeCCccccccc-----cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037 249 ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (519)
Q Consensus 249 ~lasgs~dg~I~vw~~~~~~~~~~-----~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~ 323 (519)
.+++|+....|.=+++........ .+...-.+.+|.++|++++.+ +.|+|||+.|-+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 467888888888887765442111 122233567899999999985 8999999999999999999998888888
Q ss_pred ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (519)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L 402 (519)
.+...++++.|...... ...+.++.++.+.+|+...|. .+..+++|.+.|+.++.+|.+ +.
T Consensus 81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~----~~~slK~H~~~Vt~lsiHPS~KLA 142 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWE----LLKSLKAHKGQVTDLSIHPSGKLA 142 (362)
T ss_pred ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeE----EeeeecccccccceeEecCCCceE
Confidence 88777777777654321 255788899999999999884 478899999999999999999 77
Q ss_pred EEEeCCCcEEEEECCCCeEEEEecCCCc----------------------------------------EEEEEEeeCCCC
Q 010037 403 LSSSADKTVRLWQVGIDRCLRVFSHNNY----------------------------------------VTSVAFNPVDDN 442 (519)
Q Consensus 403 ~sgs~Dg~V~lWdl~~~~~~~~~~h~~~----------------------------------------V~~v~fsp~d~~ 442 (519)
++.+.|+.+++||+-.++.-..+..... +.|+.|. ++.
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~ 220 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGS 220 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCc
Confidence 8889999999999877654433332222 3333333 577
Q ss_pred EEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE--eeCCCEEEEEecCCeEEEEECCCC
Q 010037 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 443 ~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~--spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+|++|..|+.|++||.....+. .+.+|...|-++.+ .|++.+|++++.||.|+|||+...
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8889999999999999987666 58889999999884 467899999999999999999865
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=1.1e-21 Score=185.95 Aligned_cols=257 Identities=19% Similarity=0.267 Sum_probs=183.6
Q ss_pred eeeEeecccceeec---CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 231 MARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 231 ~~~~~~~~~~~~~s---p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
+.+|.+++.++++. +....+++++.|.++++|.++........... -.||..+|.++...++|..+++|+.|..
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccce
Confidence 44455555544432 33346999999999999999876655544333 3599999999999999999999999999
Q ss_pred EEEEecccCee--ece----------eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037 308 VRVWKVIEHER--LDG----------FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (519)
Q Consensus 308 I~iWd~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (519)
|+||+..+... ... ..........+.....+...+..+.+.. ....+..+.+.++..|+.....
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d----~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD----ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC----CCceEeecccceEEEEEeeccc
Confidence 99999322110 000 0000111112223333333333332222 2234566778888888876643
Q ss_pred ccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 010037 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 376 ~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~---~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
. +.++. -...++|++++|.. +|++|+.|..|+|||.+++. ..+.| .|...|.++.|+|.+..+|++|+.|
T Consensus 293 ~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 293 L----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred c----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 3 22222 35678999999987 99999999999999998763 22333 5999999999999889999999999
Q ss_pred CeEEEEEcCCCc-EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 451 GKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 451 g~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+++++||+|+.+ .+ ....|.+.|.++.|.. +.+|++|+.|.+|+|+.-.
T Consensus 368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999999876 44 7889999999999965 4579999999999999653
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=193.90 Aligned_cols=170 Identities=26% Similarity=0.497 Sum_probs=151.8
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (519)
Q Consensus 282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (519)
+.+.-+-|..|+|||+||++|+.||-|.+|++.+|+..+.++...
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------------------- 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------------------- 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence 456678899999999999999999999999999998655543221
Q ss_pred CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEee
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp 438 (519)
...+--+..+|.|+.|+.+. .|++|+.||.|++|.+.+|.|++.|. |...|+|+.|+.
T Consensus 256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 12234477899999999999 99999999999999999999999996 999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
|+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|.+||..+++++.||+|++|+.++..+..
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 8999999999999999999999998 589999999999999999999999999999999999876543
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.5e-22 Score=200.51 Aligned_cols=242 Identities=20% Similarity=0.286 Sum_probs=202.2
Q ss_pred cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC--eeece
Q 010037 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDG 321 (519)
Q Consensus 244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~--~~~~~ 321 (519)
.|.+++|.+|++||.|++|++.....+.+.. ....++.|.+.|+.+....+++.|++++.|-+|++|+...+ -++..
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence 3577789999999999999998666544433 23467899999999999999999999999999999999877 57778
Q ss_pred eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc------cccceeEee-ccCCCeeEE
Q 010037 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDL 394 (519)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~V~~l 394 (519)
+..|...+.|+++...... ....++.+..+.+|+...... .......+. |+...|.++
T Consensus 113 ir~H~DYVkcla~~ak~~~---------------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNE---------------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred hhcccchheeeeecccCce---------------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 8888888888887533222 224566677777777764311 123333444 899999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCC
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE 471 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~ 471 (519)
+.++.| .+++|+..+.+++||.++.+.+..+ +|...|.++..++ +|+.+++++.||+|++||+...+++ .+..|..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 999999 9999999999999999998776666 5999999999999 9999999999999999999999888 5888999
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.|+++..+|+-..+.+|+.||.|..=|+++.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999999999884
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.5e-21 Score=206.93 Aligned_cols=262 Identities=18% Similarity=0.236 Sum_probs=201.6
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCc-----------cccccccccccceeecCCCCEEEEEEccC
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (519)
.+..+..|...+.|+.|+|||++||+|+.|+.|.||.... +......+.....+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3445666778888999999999999999999999999873 11112233345678999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (519)
Q Consensus 296 g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (519)
+.+||+++.|++|.||+..+.+++..+..|...+..+.|.+.+. .....+.|..+.+|....|.
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk----------------y~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK----------------YFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC----------------eeeeecCCceEEEEEcccce
Confidence 99999999999999999999999999999999888888876652 22345667777777765554
Q ss_pred ccccceeEee--ccCCCeeEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeC----C---
Q 010037 376 LLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV----D--- 440 (519)
Q Consensus 376 ~~~~~~~~~~--~h~~~V~~l~~sp~~-~L~sgs----~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~----d--- 440 (519)
+....-..+. .-.....-+.|+|+| +|++.. .-.++.|.+-.+-+.-..+ .|..++.++.|+|. .
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence 4221111111 123467889999999 887763 2346788877666644444 69999999999983 1
Q ss_pred -----C----CEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 441 -----D----NYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 441 -----~----~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
. ..+|+|+.|++|-||.....+++. ..-....|..++|+|||..|++++.||+|.+..+....+
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 2 168899999999999998777663 333467899999999999999999999999999876543
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.3e-21 Score=207.31 Aligned_cols=208 Identities=24% Similarity=0.391 Sum_probs=161.3
Q ss_pred cccceeecCCCCeEEeee--cCCeEEEeeCCcccccccc-----ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs--~dg~I~vw~~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+-++.++|++..+|+|+ .|+.++||+...-..+... ....-....|.+.|+|+.|+|||+|||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 356789999999999999 8999999988643221111 111224567999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
||..... .... ++...+. ...+ . ..+.+..+.+|.+
T Consensus 95 iW~~~~~-~~~~----------~fgs~g~------------------------~~~v-----E----~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 95 IWERAEI-GSGT----------VFGSTGG------------------------AKNV-----E----SWKVVSILRGHDS 130 (942)
T ss_pred Eeeeccc-CCcc----------ccccccc------------------------cccc-----c----eeeEEEEEecCCC
Confidence 9997641 0000 0000000 0000 0 0134677899999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY- 466 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~- 466 (519)
.|.+++|+|++ +|++++.|++|.||+..+.+.++++. |.+.|-.+.|.| -|+|||+-+.|++|+||++.+..+.+.
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence 99999999999 99999999999999999999998886 999999999999 999999999999999999887655532
Q ss_pred ------ccCCCceEEEEEeeCCCEEEEEe
Q 010037 467 ------TDIREIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 467 ------~~~~~~V~~v~~spdg~~l~sgs 489 (519)
......+..+.|+|||++|++.-
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchh
Confidence 22344588999999999999854
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=4.4e-22 Score=190.32 Aligned_cols=250 Identities=18% Similarity=0.235 Sum_probs=202.3
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+.+|...++.+.|-++...|++|+.|..|++|++...+.++ ..++.|..++|+.+.|.++++++++++.|+.++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----hhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 466777888889999999999999999999999998655332 346778889999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+|++...+...++.+|...++++.+...+.. .+.++.+.++..|+.........++ ...
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S 303 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS 303 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence 9999999999999998888877766554432 2455566666666655432222221 234
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-c-
Q 010037 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T- 467 (519)
Q Consensus 390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~- 467 (519)
.+.+|..++ ..+++|..|++||+||+++..+.......+.|+++..++ ++..+.+++.|.++.+.|+++..+... .
T Consensus 304 ~cnDI~~~~-~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 304 QCNDIVCSI-SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred cccceEecc-eeeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence 455555542 278999999999999999999999999788999999999 999999999999999999999887742 1
Q ss_pred ---cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 468 ---~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
......+.++|+|++.|+++|+.||.|+||++.++++...
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 1233489999999999999999999999999999998754
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.2e-21 Score=186.05 Aligned_cols=229 Identities=18% Similarity=0.277 Sum_probs=183.8
Q ss_pred eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
.|...+-+++.+|||++||+|+.|..|.||+..... ..+.+.+|.+.|.+++|-.....|++++.|++|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 566677789999999999999999999999987433 3456899999999999998888999999999999999
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
+.....+.++..|+..+..+...... . ....+..+.++.+|.. .+.....+.+|.+.+-
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~re--R--------------~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRE--R--------------CVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID 331 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhccc--c--------------eEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence 99888887777776655443322111 0 1112334555555544 4455667889999999
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec--C-----------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 393 ~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~--h-----------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
|++|-.+.++++|+.+|.|.||++.+.+++.+.. | +.+|++|+..| ..+++|+|+.+|.|++|-+.
T Consensus 332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 9999998899999999999999999999888764 2 23899999999 99999999999999999998
Q ss_pred CC----cEEeeccCCCceEEEEEeeCCCEEEEEec
Q 010037 460 RC----QVVDYTDIREIVSAVCYCPDGKGGIVGTM 490 (519)
Q Consensus 460 ~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~ 490 (519)
.+ .++.-....+.|++++|+++|+.|++|..
T Consensus 411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred CCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 77 34444557788999999999997777643
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.5e-21 Score=173.59 Aligned_cols=192 Identities=25% Similarity=0.467 Sum_probs=157.1
Q ss_pred cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEE
Q 010037 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (519)
Q Consensus 255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (519)
..|++.|.++..... +...+.+ .-.+.+..++|+++ .+.+++++.||+++|||+...
T Consensus 36 G~G~L~ile~~~~~g----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----------------- 93 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKG----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----------------- 93 (311)
T ss_pred cCceEEEEecCCCCC----eEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCC-----------------
Confidence 368899988862221 1111122 23578999999995 468899999999999995221
Q ss_pred EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcE
Q 010037 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTV 411 (519)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V 411 (519)
.+|++.++.|...|.++.|++.. .+++++.|++|
T Consensus 94 --------------------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 94 --------------------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred --------------------------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 24678889999999999999965 88888999999
Q ss_pred EEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEee-CCCEEEEE
Q 010037 412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCP-DGKGGIVG 488 (519)
Q Consensus 412 ~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~sp-dg~~l~sg 488 (519)
+||+..-++.+++|. |...|...+|+|..+++|+++|.|+++++||++. ++.+.+..|...|.++.|+. +.+.|+||
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999999999999997 9999999999999999999999999999999986 45556788888999999987 56789999
Q ss_pred ecCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037 489 TMTGNCRFYDIKGMQIFDLSTTAYLFALLGH 519 (519)
Q Consensus 489 s~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH 519 (519)
+.|+.|++||++..+ .+++.|.||
T Consensus 210 ~vd~~vr~wDir~~r-------~pl~eL~gh 233 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLR-------TPLFELNGH 233 (311)
T ss_pred CCCceEEEEehhhcc-------ccceeecCC
Confidence 999999999998754 346666666
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-20 Score=164.31 Aligned_cols=249 Identities=18% Similarity=0.260 Sum_probs=195.9
Q ss_pred eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc----CCCEEEEEe-CCC
Q 010037 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGG-EDG 306 (519)
Q Consensus 232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~LaSgs-~Dg 306 (519)
+.|...+.|.+|+|.|.++|+|+.|++|++...+........ ...+|.-|.+.|..++|-. .|..|++++ .|.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 456777888999999999999999999999887654433222 2235788999999999965 346788876 478
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|.+-|-.+++....+..+...+..++.. .......++.+.++.+|+.++.......-..+.+
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilalysw-----------------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALYSW-----------------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEEEe-----------------cCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 89999998888777776665544333211 1123356788889999998775443222222222
Q ss_pred ---cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 387 ---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 387 ---h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
....|..++..|.| +|++|-.|....+||++.++.++.|. |...|.|+.|+| ...|+++++.|.+|++-|+...
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence 24689999999999 99999999999999999999999985 999999999999 8999999999999999999753
Q ss_pred -----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 462 -----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 462 -----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.++....|++.+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 233567899999999999999889999999999999764
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=194.19 Aligned_cols=261 Identities=18% Similarity=0.241 Sum_probs=202.0
Q ss_pred ccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCCEE
Q 010037 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYL 299 (519)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~L 299 (519)
...+........+.++.+++++|+|++||+|..-|+++||++..... .-.+.+|...|.|+.|+. ..++|
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhh
Confidence 33444444455567778899999999999999999999999874332 224689999999999986 34789
Q ss_pred EEEeCCCcEEEEecccC-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037 300 ASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (519)
Q Consensus 300 aSgs~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (519)
|+++.|..|+|+|+... ..+.++..|...++.+.|..++.+.- .+.....+........+..++.+..
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~---------- 588 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFP---------- 588 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceecc----------
Confidence 99999999999999654 45667788888888888877664321 1222222222222222222222111
Q ss_pred cceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (519)
.++-.-....+.+|+..|+. ++++++.|+.|+|||+.+++..+.|+ |.+....+...| .+.|+++.+.|.+|
T Consensus 589 --r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl 665 (1080)
T KOG1408|consen 589 --RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTL 665 (1080)
T ss_pred --ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCce
Confidence 11111224678999999988 99999999999999999999999996 778888999999 99999999999999
Q ss_pred EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
.++|..+++++ +..+|...|+.+.|.+|-+.|++.+.||.|.||.+..-.+
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 99999999998 6899999999999999999999999999999999975433
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=173.90 Aligned_cols=197 Identities=18% Similarity=0.298 Sum_probs=166.2
Q ss_pred eecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
.|.+.+++|+| ...++++|+.||+||+|++..... ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 47788899999 556667999999999999985421 222445679999999999999999999999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+++. ..+..|.++|.+
T Consensus 102 ~S~Q~---------------------------------------------------------------~~v~~Hd~pvkt 118 (347)
T KOG0647|consen 102 ASGQV---------------------------------------------------------------SQVAAHDAPVKT 118 (347)
T ss_pred cCCCe---------------------------------------------------------------eeeeecccceeE
Confidence 88862 335669999999
Q ss_pred EEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---eec
Q 010037 394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT 467 (519)
Q Consensus 394 l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~~~ 467 (519)
+.|-+.. .|+|||.|++|+.||++...++.++.....|+++..- ..+++.+..+..|.+|+++++... ...
T Consensus 119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 9998765 8999999999999999999999999999999988763 458888899999999999876543 233
Q ss_pred cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
..+-.+.+|+..+|....+.|+..|.|.|..+..+
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 45667899999999999999999999999988764
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9e-22 Score=201.08 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=188.8
Q ss_pred eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
+.|+. +.++||+++..|.|.+||+.+.... .....|..|+..|+++.|++ ...+|+||+.||+|++||++..+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 44443 4578999999999999999873211 11234678999999999998 557999999999999999999988
Q ss_pred eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
...+......+.-+.|.+.....+ ......+.+..|+.+..+ .+...+.+|.++|.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F---------------~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKF---------------ASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred cccccccchhhhceeeccCCCceE---------------EEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecC
Confidence 888777777777788877764433 344556677788877654 34667889999999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCcEE--eeccCCC
Q 010037 399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQVV--DYTDIRE 471 (519)
Q Consensus 399 ~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~--Dg~V~iwd~~~~~~~--~~~~~~~ 471 (519)
++ +||||+.|++|+|||+.+.+ .+.++....+|.+|.|-|.....|++++. |-.|+|||++..-+. .+..|..
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 88 99999999999999998654 44555677899999999966777887774 779999999987655 5788999
Q ss_pred ceEEEEEee-CCCEEEEEecCCeEEEEECC
Q 010037 472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 472 ~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~ 500 (519)
.++.++|.. |-..|.+++.||.|..-.++
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhhh
Confidence 999999966 45678899999987554443
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-20 Score=190.89 Aligned_cols=235 Identities=21% Similarity=0.307 Sum_probs=187.6
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
+.|+ ..+.||+|. ...|++|+....... +...-+...|+++.|+++|.+||+|..+|.|.|||..+.+.+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~-------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVT-------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceE-------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 5677 445666653 457999998765521 1122347899999999999999999999999999999999888
Q ss_pred eeec-cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
.+.. +...+.++.|.. .....++.++.+..++.+...... ..+.+|...|..++|+++
T Consensus 254 ~~~~~h~~rvg~laW~~------------------~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWNS------------------SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPD 312 (484)
T ss_pred cccCCcCceeEEEeccC------------------ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCC
Confidence 8887 666676776652 122345556666666665543322 237899999999999999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe--CCCeEEEEEcCCCcEEeeccCCCceEE
Q 010037 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA 475 (519)
Q Consensus 400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~~~V~~ 475 (519)
+ +|++|+.|+.|.|||.....++..+. |...|.+++|+|....+||+|+ .|+.|++||..+++.+........|..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS 392 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence 9 99999999999999997777776664 9999999999998899999965 599999999999999999999999999
Q ss_pred EEEeeCCCEEEE--EecCCeEEEEECCCCeee
Q 010037 476 VCYCPDGKGGIV--GTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 476 v~~spdg~~l~s--gs~dg~v~iwdl~~~~l~ 505 (519)
+.|++..+-|++ |..++.|.||+..+.+..
T Consensus 393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred EEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence 999999977776 445778999999775443
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.8e-21 Score=186.40 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=167.8
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
..+.+.+++|+|...+=.+....-++.||+..... ..+++.-.++.|.++.|..||++||.|...|.|+|+|+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 34677789999988766555566789999876332 22334456788999999999999999999999999996
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+.. .+..+++|..+|..
T Consensus 98 k~r~--------------------------------------------------------------iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 98 KSRV--------------------------------------------------------------ILRQLYAHQAPVHV 115 (487)
T ss_pred ccHH--------------------------------------------------------------HHHHHhhccCceeE
Confidence 4421 14557889999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEeeccC
Q 010037 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI 469 (519)
Q Consensus 394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~ 469 (519)
+.|+|.+ .|++|+.|+.+++||+.+...+..+ .|.++|.|.+|+|.++.++++|+.||+||+||++.. ..+....|
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 9999987 8999999999999999999875444 499999999999988889999999999999999987 66677889
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEEEECC-CCeee
Q 010037 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-GMQIF 505 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~-~~~l~ 505 (519)
..+|..+.+-|.|..+++++. ..|+|||+. ++++.
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence 999999999999999999874 479999998 45543
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.4e-21 Score=177.66 Aligned_cols=245 Identities=18% Similarity=0.346 Sum_probs=184.3
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
.+.+.+|.+++-.++.......+.+++.|.+-+||.++.+.. ...+.||.+.|++|+|++.+.++++++.|++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcc
Confidence 345677888888888888888999999999999999986554 3458899999999999999999999999999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
.+||...-.-....-..+.....- ...-.. +. .. .........++ .....|+..+.+|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsE--------eE~e~s--De-~~-~d~d~~~~sD~----------~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSE--------EEEEHS--DE-HN-RDTDSSEKSDG----------HTIRVPLMRLTGH 271 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCch--------hhhhcc--cc-cc-cccccccccCC----------ceeeeeeeeeecc
Confidence 999984221111000000000000 000000 00 00 00000000000 0113568889999
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--cE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QV 463 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--~~ 463 (519)
.+.|.+..|-..| .+++++.|.+..+||++++.++..+. |....+.++-+| ..+++++.+.|.+.++||++.. .+
T Consensus 272 ~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV 350 (481)
T KOG0300|consen 272 RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSV 350 (481)
T ss_pred ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhccee
Confidence 9999999999988 99999999999999999999999986 999999999999 8999999999999999999953 23
Q ss_pred EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
..+.+|.+.|+++.|.-|.+ +++|+.|.+|+|||+++..
T Consensus 351 ~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 36899999999999998865 8899999999999998653
No 94
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.1e-22 Score=202.98 Aligned_cols=207 Identities=21% Similarity=0.460 Sum_probs=184.8
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
...+|...++++.....++.+++|+.|..+-+|.+.+.....+ |.+|..+|.+|.|+++..+|++|+.+|+|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-------~~~hespIeSl~f~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS-------LTGHESPIESLTFDTSERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe-------eeccCCcceeeecCcchhhhcccccCCcee
Confidence 4455666666666677888999999999999999987665443 789999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+||+.+.+. ++++.+|..
T Consensus 96 ~wDleeAk~--------------------------------------------------------------vrtLtgh~~ 113 (825)
T KOG0267|consen 96 VWDLEEAKI--------------------------------------------------------------VRTLTGHLL 113 (825)
T ss_pred eeehhhhhh--------------------------------------------------------------hhhhhcccc
Confidence 999976542 556788999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-ee
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 466 (519)
.+..+.|+|-+ +.++|+.|..+++||++..-|.+.+. |...|.++.|+| +|.++++|+.|.+++|||+..++++ .+
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccccccc
Confidence 99999999999 88999999999999999888999987 999999999999 9999999999999999999999998 57
Q ss_pred ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
..|...+.++.|+|..-+++.|+.|+++++||+++-+++.
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred ccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 7799999999999999999999999999999999776654
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=6.6e-21 Score=176.07 Aligned_cols=208 Identities=20% Similarity=0.390 Sum_probs=170.9
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg 306 (519)
-++++.-|.+.++++.|+|....|++|+.|++|+++|+.+...... + +.| .-..+|.++.|+|.|.+|+.|..-.
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-~---K~~-qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-F---KVF-QDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-H---HHh-hccceeeeEeecCCCceEEEecCCC
Confidence 3567788999999999999999999999999999999986543211 1 111 2346899999999999999999999
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
++++||+.+-++...-. .-.+
T Consensus 239 ~~rlYdv~T~Qcfvsan-----------------------------------------------------------Pd~q 259 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSAN-----------------------------------------------------------PDDQ 259 (430)
T ss_pred ceeEEeccceeEeeecC-----------------------------------------------------------cccc
Confidence 99999998877532110 1246
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--C-CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
|.+.|+++.+++.+ +.+|++.||.|+|||=-+++|+.++. | ...|.+..|.. +++|+++.+.|..|++|.+.+++
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCc
Confidence 99999999999999 89999999999999999999999996 4 45788999998 99999999999999999998766
Q ss_pred EEe-e-------------------------------------------------ccCCCceEEEEEeeCCCEEEEEecCC
Q 010037 463 VVD-Y-------------------------------------------------TDIREIVSAVCYCPDGKGGIVGTMTG 492 (519)
Q Consensus 463 ~~~-~-------------------------------------------------~~~~~~V~~v~~spdg~~l~sgs~dg 492 (519)
++. + .+|.+.+..+.-+|.+..+++|+.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 442 1 24666777788888888888888888
Q ss_pred eEEEEEC
Q 010037 493 NCRFYDI 499 (519)
Q Consensus 493 ~v~iwdl 499 (519)
.+|+|--
T Consensus 419 raRFWyr 425 (430)
T KOG0640|consen 419 RARFWYR 425 (430)
T ss_pred eeeeeee
Confidence 8888854
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-19 Score=167.02 Aligned_cols=213 Identities=22% Similarity=0.346 Sum_probs=154.8
Q ss_pred ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (519)
..+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+++..+.+......+..+.|.......+....
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--------- 76 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--------- 76 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---------
Confidence 34455566788999999999999999999999999999999999999888888777777665544333221
Q ss_pred eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC-------
Q 010037 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH------- 427 (519)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h------- 427 (519)
..+.++...+... .+.++.|.||...|+.|+.+|-+ .+++++.|++|++||++..+|...+..
T Consensus 77 -----k~d~tIryLsl~d----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~A 147 (311)
T KOG1446|consen 77 -----KEDDTIRYLSLHD----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAA 147 (311)
T ss_pred -----CCCCceEEEEeec----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCccee
Confidence 1122232222222 35588899999999999999988 999999999999999997665543321
Q ss_pred ---------------------------------------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ec
Q 010037 428 ---------------------------------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT 467 (519)
Q Consensus 428 ---------------------------------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~ 467 (519)
....+.|.|+| +|++++.+...+.+++.|.-+|.+.. +.
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 12345556666 66666666666666666666655442 22
Q ss_pred cCCC---ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 468 DIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 468 ~~~~---~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.+.. .-...+|+||++++++|+.||+|.+|++++++....
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 2221 125678999999999999999999999998876543
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-19 Score=167.03 Aligned_cols=244 Identities=18% Similarity=0.215 Sum_probs=181.0
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccc-------------------------------------ccccc
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-------------------------------------SLYTG 277 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~-------------------------------------~~~~~ 277 (519)
...+.++.|+++|.++++++.|..++||+...+..... .-...
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 45677899999999999999999999999876443211 00111
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (519)
+-|.||...|+.|+.+|-+..+++++.|++|++||++..++...+.....+ +.++.+ .+.++++.....
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp--~GLifA~~~~~~------- 162 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP--EGLIFALANGSE------- 162 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC--CCcEEEEecCCC-------
Confidence 347899999999999998899999999999999999988877666544332 233322 233333333222
Q ss_pred eccCCCeeEEEeCCccccccccceeEee---ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC---
Q 010037 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--- 429 (519)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~--- 429 (519)
.+.+++.+.+.. .|..++. +-....+.|.|+|+| .|+.++..+.+++.|.-.|..+.++. +..
T Consensus 163 -------~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 163 -------LIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred -------eEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 444555554432 2333332 346789999999999 89999999999999999999998886 221
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eecc-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.-...+|.| +++++++|+.||+|.+|+++++..+ .+.+ +..++.++.|+|.-.++++++ ..+.+|=...
T Consensus 234 ~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 234 LPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred cceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 225788999 9999999999999999999999877 4555 688999999999876666655 5677886543
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=175.60 Aligned_cols=244 Identities=18% Similarity=0.254 Sum_probs=199.1
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
+..+.+|...+..+.++|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||++++.||+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT 326 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-------CccccccccccceeeeeccCCcEEEEecCCce
Confidence 44577788888889999999999999999999999987544 22346789999999999999999999999999
Q ss_pred EEEEecccCeeeceeecc--CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 308 VRVWKVIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
..+.|+.++.++...... ....++..|.+++ .....+..++.+.+|+.+.. ..+..|.
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~----~~~a~Fp 386 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQ----TNVAKFP 386 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCc----cccccCC
Confidence 999999999877665442 2234444454443 23346677788888887653 3467889
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC- 461 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~- 461 (519)
+|.++|..|+|+.+| +|++++.|+.|++||++..+..+++. ....|.++.|.+ .|.||+.++.|=+|++++-.+.
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEeccccc
Confidence 999999999999999 99999999999999999988888886 334699999999 9999999988877777765443
Q ss_pred -c-EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 462 -Q-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 462 -~-~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
. +..+..|.+..+.+.|....+++++++.|..+++|.+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 3 3357778889999999999999999999999988864
No 99
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.8e-20 Score=177.40 Aligned_cols=195 Identities=21% Similarity=0.342 Sum_probs=156.0
Q ss_pred CCCeEEeeecCCeEEEeeCCcccccc---------ccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeccc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~ 315 (519)
+..+.|+=+..|+|+||++...-..+ +......++.+|.+.=+.|+|||-. ..|+||..-+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 44566677788999999987532222 2233445678999999999999922 2488888888999999876
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
+.-. .. ...+.+|+..|-+|+
T Consensus 244 g~W~--------------------------------------------------------vd---~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 244 GSWK--------------------------------------------------------VD---QRPFTGHTKSVEDLQ 264 (440)
T ss_pred Ccee--------------------------------------------------------ec---Cccccccccchhhhc
Confidence 5410 00 123567999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEECCCC---eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc---EE-ee
Q 010037 396 WSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DY 466 (519)
Q Consensus 396 ~sp~~--~L~sgs~Dg~V~lWdl~~~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~---~~-~~ 466 (519)
|+|.. .|++||-||+|+|||++.+ .++.+-.|.+.|+-|.|+. ...+||+|+.||+++|||+++-+ ++ .+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 99975 9999999999999999988 5556656999999999999 77799999999999999999743 33 78
Q ss_pred ccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037 467 TDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 467 ~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~ 500 (519)
..|..+|++|.|+|. ...|++++.|..|.|||+.
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 899999999999995 4568888999999999996
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=7.6e-20 Score=185.13 Aligned_cols=224 Identities=21% Similarity=0.328 Sum_probs=179.8
Q ss_pred eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~ 319 (519)
+++.+ ++..+++|+.|+.|.+|.... ......+.+|+..|.|+....++. |+||+.|.++++|... ++.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~-------~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~ 133 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQ-------AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV 133 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCC-------CCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence 55554 455699999999999998764 334456899999999999888887 9999999999999864 444
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
..++.|...+..+...+.. ..++++.+..+.+|... +.+.+|.+|...|..+++-++
T Consensus 134 ~~l~gH~asVWAv~~l~e~-----------------~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLPEN-----------------TYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred cccCCcchheeeeeecCCC-----------------cEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC
Confidence 4455555555444333222 44678888888888763 557889999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-CceEEEEE
Q 010037 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCY 478 (519)
Q Consensus 400 ~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~ 478 (519)
+.+++++.||.|++|++.....+....|...|+++...+ ++..+++++.|++++||+.. .+.+...+. ..|+++++
T Consensus 191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 999999999999999995555555667999999999777 78899999999999999987 555544444 48999999
Q ss_pred eeCCCEEEEEecCCeEEEEECCC
Q 010037 479 CPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
-++|. +++|+.||.||||....
T Consensus 268 L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 268 LLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeCCC-EEEeccCceEEEEEecc
Confidence 99997 78899999999998863
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=167.88 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=177.9
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc-----c---------------------------ccc
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----S---------------------------LYT 276 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~-----~---------------------------~~~ 276 (519)
..+++|.+.+.+++|+.||+.||+++.|+.|+||++++-..... + ++.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 34788999999999999999999999999999999875211000 0 000
Q ss_pred c--------------------ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEee
Q 010037 277 G--------------------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (519)
Q Consensus 277 ~--------------------~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (519)
. .--..|.-.|..+-...++.||+|++.|..|.+|++. |+.+..++...........++
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 0 0012355567677777788999999999999999998 888888777666665556655
Q ss_pred cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC----ccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcE
Q 010037 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP----KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTV 411 (519)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V 411 (519)
++.-.. ...+... +.+|.+ .-.-..-+.+..++||...|+.++|+|+. .++|.+.||++
T Consensus 239 ~GRFia-~~gFTpD---------------VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w 302 (420)
T KOG2096|consen 239 DGRFIA-VSGFTPD---------------VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW 302 (420)
T ss_pred CCcEEE-EecCCCC---------------ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE
Confidence 543221 1111111 111111 00001124467789999999999999999 99999999999
Q ss_pred EEEECCC-------CeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEE
Q 010037 412 RLWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVC 477 (519)
Q Consensus 412 ~lWdl~~-------~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~ 477 (519)
+|||+.- .+.+++.. ..+.-..+.++| .+..|+... ...|+++..++++... ...|...|++++
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is 380 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSIS 380 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEE
Confidence 9999863 22333331 233344899999 888887754 5589999999988773 456889999999
Q ss_pred EeeCCCEEEEEecCCeEEEEE
Q 010037 478 YCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 478 ~spdg~~l~sgs~dg~v~iwd 498 (519)
|+++|+++++++ |..++++.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999999988 66777775
No 102
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=175.84 Aligned_cols=211 Identities=18% Similarity=0.302 Sum_probs=162.4
Q ss_pred ccccccCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEE
Q 010037 223 GWLKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA 300 (519)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La 300 (519)
.-.+++.+..+|......+.|+|-. ..|++|..-+.|++|....+...... +.|.+|+.+|-.|+|||. ...||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence 3345566677777777789999943 34888999999999998875544332 346789999999999994 46899
Q ss_pred EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (519)
Q Consensus 301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (519)
||+.||+|+|||++.+... +
T Consensus 275 ScS~DgsIrIWDiRs~~~~------------------------------------------------------------~ 294 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKK------------------------------------------------------------A 294 (440)
T ss_pred eeecCceEEEEEecCCCcc------------------------------------------------------------c
Confidence 9999999999999877421 1
Q ss_pred eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (519)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~---~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i 455 (519)
....+.|.+.|+.|.|+..- +|++|+.||+++|||++. ++++..|+ |..+|++|.|+|.+...|++++.|.+|.|
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 12237799999999999887 899999999999999975 56788887 99999999999988889999999999999
Q ss_pred EEcCCCc-------------------EEeeccCCCceEEEEEeeCCC-EEEEEecCCeEEEE
Q 010037 456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFY 497 (519)
Q Consensus 456 wd~~~~~-------------------~~~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iw 497 (519)
||+.-.. ++........+.-+.|+++-. +|++.+.||...++
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 9985311 111112234577789998654 45666677754433
No 103
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=1.3e-19 Score=184.63 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=200.7
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
+.+|+..|.+++++.+...+++|. .+.|+||+....+ +.+++.. +-|.+..|.|.++++++|...|.+.+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k-------ciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK-------CIRTITC--GYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc-------eeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence 566777888899999988888875 5789999987433 3333432 47899999999999999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc-cccee-------
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLH------- 382 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~------- 382 (519)
+|+.+...+..++.|...+..+...+++... ++++.+.++.+|+.....-. +....
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~----------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGF----------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCce----------------EEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 9999999988888888888888877776543 34566666766665433221 10000
Q ss_pred EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
..-.-...|.|+++||+| +|+.+-.|.+|+||-+.+-+..-. ++|.-+|.|+..+| ++.+++|||.|..|+||-+.-
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence 111235789999999999 999999999999999998775544 46999999999999 999999999999999999999
Q ss_pred CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
|.+. .+.+|.+.|.++.|.|....+.+++.|+.|+-||-..-+.+
T Consensus 582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 9998 58899999999999999999999999999999998765443
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=167.39 Aligned_cols=241 Identities=12% Similarity=0.232 Sum_probs=177.9
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~ 319 (519)
|+.|++.|.+||+|+.+|.|.|||+.. +...+.+.+|..+|.+++||+||+.|+|++.|..|.+||+..|.+.
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T-------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDT-------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccc-------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 578999999999999999999999874 3355678999999999999999999999999999999999999988
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec------cCCCeeE
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLD 393 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~ 393 (519)
+.+.... ++....|.+...+..++..+..... ++.+.. +.+.+-. -.....+
T Consensus 101 ~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~-------------vi~~s~--------~~h~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 101 KRIRFDS-PVWGAQWHPRKRNKCVATIMEESPV-------------VIDFSD--------PKHSVLPKDDDGDLNSSASH 158 (405)
T ss_pred eEEEccC-ccceeeeccccCCeEEEEEecCCcE-------------EEEecC--------CceeeccCCCcccccccccc
Confidence 8877643 4555566665555554443333211 111111 0111100 1112223
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-------cE
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-------QV 463 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-------~~ 463 (519)
..|.+.| ++++|...|.+.++|..+.+++..+.. ...|..|-|+. .+.+|+..+.|..||.|+++.- .+
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~ 237 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEV 237 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCc
Confidence 3678888 999999999999999999999998873 36788999998 9999999999999999998631 11
Q ss_pred E---eec--cCCCceEEEEEeeCCCEEEEEecC-CeEEEEECCCCeeeecccc
Q 010037 464 V---DYT--DIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKGMQIFDLSTT 510 (519)
Q Consensus 464 ~---~~~--~~~~~V~~v~~spdg~~l~sgs~d-g~v~iwdl~~~~l~~~~~~ 510 (519)
- ++. -.+..=.+++|+.+|.+++.++.. ..++||.-..|.++.+-.+
T Consensus 238 e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 238 EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 1 011 112223578999999999888754 4599999999988876433
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.1e-20 Score=186.58 Aligned_cols=256 Identities=18% Similarity=0.285 Sum_probs=202.9
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE-ccCCCEEEEEeCCC
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG 306 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~LaSgs~Dg 306 (519)
...+..|.+=++.+++.-+++.|++++.|-+|++|+..... ..+..++..|++-|.|+++ -++...+||||-|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 34556666777777888899999999999999999987543 1344567889999999999 77888999999999
Q ss_pred cEEEEecccCee--eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037 307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (519)
Q Consensus 307 ~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
.|.+||+.++.. ...++.. +.......+...++.+...... ...+.++....+.+|+++. .+.+..+
T Consensus 141 ~IflWDin~~~~~l~~s~n~~----t~~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt----~~kimkL 209 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNV----TVNSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRT----CKKIMKL 209 (735)
T ss_pred cEEEEEccCcchhhhhhcccc----ccccCCCCCccceeeeecCCcc---eEEEecCcccceEEecccc----ccceeee
Confidence 999999998743 2222111 1111111334445555544433 4556788889999999986 4557788
Q ss_pred eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC- 461 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~- 461 (519)
.||+..|.++..+++| .+++++.||+|+|||+...+|+.++. |...|++++.+| +-.++++|+.||.|..=|+++.
T Consensus 210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCch
Confidence 9999999999999999 99999999999999999999999997 999999999999 8999999999999999999985
Q ss_pred cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+.........+|..+..+.+.+-+.+++.|+.|+-|...
T Consensus 289 ~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 289 KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 334455666778888887666666888899999999775
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=5.3e-20 Score=169.10 Aligned_cols=210 Identities=18% Similarity=0.240 Sum_probs=164.9
Q ss_pred eeEeecccceeecC-CCCeEEeeecCCeEEEeeCCcccccccccccc--------ceeecCCCCEEEEEEcc-CCCEEEE
Q 010037 232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------QEFLAHEGSILTMKFSL-DGQYLAS 301 (519)
Q Consensus 232 ~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~--------~~l~~H~~~I~~l~fsp-dg~~LaS 301 (519)
..|...++++.+.+ .|+++++|+.||.|.|||++............ +.-.+|+-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34556777777776 57899999999999999998654211111111 12346888999999999 6668889
Q ss_pred EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (519)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (519)
++.|.+++|||..+.+....++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------------------------------- 141 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------------------------------- 141 (397)
T ss_pred ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence 9999999999998776433322
Q ss_pred eEeeccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037 382 HEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (519)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw 456 (519)
-.+.|..-+|+|-. ++++|..|-.|++-|+.+|.+-+++. |.+.|.+|.|+|..+-.|++|+.||.|++|
T Consensus 142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 13345556666632 88899999999999999999999996 999999999999777788999999999999
Q ss_pred EcCCC-c--------------EEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 457 EVRRC-Q--------------VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 457 d~~~~-~--------------~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
|++.. - .++ -..|.+.|+.+||+.||.++++++.|..+++|+..+|.-
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 99863 1 111 345778899999999999999999999999999987653
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.6e-19 Score=163.45 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=181.0
Q ss_pred eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 010037 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR 309 (519)
Q Consensus 232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~ 309 (519)
++|.+-+.++.|.+.|+.+|+++.|++|+||+..+... +..+....+.|.+.|+.|.|.+ -|+.+|+++.|++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 45678888999999999999999999999999754332 4445567889999999999966 689999999999999
Q ss_pred EEecccC---------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC------ccc
Q 010037 310 VWKVIEH---------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------KVF 374 (519)
Q Consensus 310 iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~~ 374 (519)
||.=... .....+.-....+..+.|.+.+.+... ...+.++.+.++.. ..|
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLkl--------------A~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKL--------------AAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEE--------------EEeccCcEEEEEecCCccccccc
Confidence 9985311 112233333444555566665544333 33445555555542 112
Q ss_pred ccccc---ceeEeeccCCCeeEEEEcCCC----eEEEEeCC-----CcEEEEECCCC--eEEEE--e-cCCCcEEEEEEe
Q 010037 375 RLLEK---PLHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGID--RCLRV--F-SHNNYVTSVAFN 437 (519)
Q Consensus 375 ~~~~~---~~~~~~~h~~~V~~l~~sp~~----~L~sgs~D-----g~V~lWdl~~~--~~~~~--~-~h~~~V~~v~fs 437 (519)
.+..+ .+.....+.....|+.|+|.. +|+.|+.+ +.++||....+ +.++. + .|..+|+.|+|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 22111 111223577788999999865 77777766 57889976543 33322 2 399999999999
Q ss_pred eCCC---CEEEEEeCCCeEEEEEcCCCc--------------------EE-eeccCCCceEEEEEeeCCCEEEEEecCCe
Q 010037 438 PVDD---NYFISGSIDGKVRIWEVRRCQ--------------------VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (519)
Q Consensus 438 p~d~---~~l~sgs~Dg~V~iwd~~~~~--------------------~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~ 493 (519)
|.-| .+||+++.|| |+||.+.... .+ .+.+|+..|..+.|+-.|..|++.+.||.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 9533 4789999999 9999987311 11 36789999999999999999999999999
Q ss_pred EEEEECCCC
Q 010037 494 CRFYDIKGM 502 (519)
Q Consensus 494 v~iwdl~~~ 502 (519)
||+|...-.
T Consensus 312 VRLWkany~ 320 (361)
T KOG2445|consen 312 VRLWKANYN 320 (361)
T ss_pred eeehhhhhh
Confidence 999987543
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=6.7e-20 Score=185.50 Aligned_cols=237 Identities=21% Similarity=0.280 Sum_probs=190.0
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEE-EEEcc-CCCEEEEEeCCCcE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~LaSgs~Dg~I 308 (519)
+.+|...+..+++.+ +..++++++||++++|+-..... .....+.+|.+-|.+ +++-+ ++-.|++|+.|.+|
T Consensus 10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eccCccchheeEecC-CeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence 334444444445444 44788999999999998753322 222456788888877 88876 55569999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (519)
.+|.+.+......+..|+..+.++...... ..++++.+.+..+|.... ....+.+|.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-----------------~~iSgSWD~TakvW~~~~------l~~~l~gH~ 140 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-----------------TLISGSWDSTAKVWRIGE------LVYSLQGHT 140 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcC-----------------ceEecccccceEEecchh------hhcccCCcc
Confidence 999999999888888877765554422211 145777888888887653 345589999
Q ss_pred CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (519)
Q Consensus 389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 467 (519)
..|+.++.-|.+.++|||.|++|++|.- ++++++|. |.+.|+.+++-| +..|++++.||.|++|++....+..+.
T Consensus 141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ 216 (745)
T KOG0301|consen 141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH 216 (745)
T ss_pred hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence 9999999999999999999999999974 78888886 999999999987 557889999999999999666666899
Q ss_pred cCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+|...|+++...+++..+++++.|++++||+..
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999988888999999999999999986
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=167.14 Aligned_cols=213 Identities=19% Similarity=0.352 Sum_probs=155.3
Q ss_pred ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee----ceeeccCCCCceEEEeecCCCCeEEeeccCCc
Q 010037 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK 351 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (519)
....+++|.+.|++|+|+.||++|||++.|++|+||++..-... ...+.....++.+.|.++-...++.+. ...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCE
Confidence 33468999999999999999999999999999999999754321 112233345667777777666665554 2222
Q ss_pred eeeeeeec---cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-
Q 010037 352 IDKTKSLR---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS- 426 (519)
Q Consensus 352 ~~~~~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~- 426 (519)
+..+.... ++.....+-|+. .+--+.|...|..+-...++ +|++++.|.+|.||+++ |+.+..+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 21111111 111111111111 11223467777777777777 99999999999999999 88888775
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC---CC------cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RC------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~---~~------~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw 497 (519)
....-+..+.+| +|+++++++.---|++|.+- .+ ++..+.+|...|.++||+|+...+++.+.||+++||
T Consensus 227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 444567788999 99999999999999999963 22 244689999999999999999999999999999999
Q ss_pred ECC
Q 010037 498 DIK 500 (519)
Q Consensus 498 dl~ 500 (519)
|+.
T Consensus 306 dtd 308 (420)
T KOG2096|consen 306 DTD 308 (420)
T ss_pred ecc
Confidence 985
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.9e-21 Score=195.08 Aligned_cols=192 Identities=23% Similarity=0.430 Sum_probs=172.5
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.+++|...+.++.|++...+|++|+.+|+|++||+...+ ..+++.+|...|..+.|+|-+.|.|+|+.|+.++
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLK 137 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-------hhhhhhccccCcceeeeccceEEeccccccccce
Confidence 478999999999999999999999999999999998433 2346889999999999999999999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+||++...| .+.+.+|..
T Consensus 138 iwD~Rk~Gc--------------------------------------------------------------~~~~~s~~~ 155 (825)
T KOG0267|consen 138 IWDIRKKGC--------------------------------------------------------------SHTYKSHTR 155 (825)
T ss_pred ehhhhccCc--------------------------------------------------------------eeeecCCcc
Confidence 999875443 455678999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-e
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y 466 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~ 466 (519)
.|.++.|+|+| +++.++.|.+++|||+..++.+..|. |...+..+.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999999999 99999999999999999999999998 999999999999 88899999999999999999988884 4
Q ss_pred ccCCCceEEEEEeeCCCEEEEEecC
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
......|.+.+|+|+|..+++|...
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccCCceeeeecCCceeeecCchh
Confidence 4557889999999999988887755
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.1e-19 Score=183.26 Aligned_cols=240 Identities=16% Similarity=0.181 Sum_probs=183.1
Q ss_pred eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
.|..+...++|.|+|.+|++++.||.|++|+......+. ..+.-|...|.+++-. +.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------chhhccCceeEEEeec--ccceEEeeccceEEEee
Confidence 455566679999999999999999999999976542221 1223377788877764 55899999999999999
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
+.+++.-..+..-..+..++.+..++. ....++.+..+.+.+... ......+.+|.++|.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVL 142 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEeccc----cchheeecccCCcee
Confidence 988875544444444455555544332 223344455554444332 234677899999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
++.|+|++ +|++.+-||+|++||+.++.+..++. ....+..++|+| ++..|+.-..|+.|++|+..+..
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCce
Confidence 99999999 99999999999999999998877764 245678899999 77777777889999999999887
Q ss_pred EE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 463 VV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 463 ~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.. ....+...++.++|+|.|+|||+++.||.|.|||+.+
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 65 2334455599999999999999999999999999985
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.5e-19 Score=167.63 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=201.5
Q ss_pred ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeC------Ccccc--------c--cc-------------c----
Q 010037 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPV------KKQSR--------E--LS-------------S---- 273 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~------~~~~~--------~--~~-------------~---- 273 (519)
.+..+++|...++++.|++.+.++++++.|++-.||.. ..... + .+ .
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 34567889999999999999999999999999999973 21100 0 00 0
Q ss_pred ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCcee
Q 010037 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (519)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (519)
......|.+|.+.|.+..|-..|+.+++++.|.+..+||+++++.+..+..+....+.+...+..
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--------------- 326 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--------------- 326 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc---------------
Confidence 01123578999999999999999999999999999999999999998888877655443332221
Q ss_pred eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEecCCCcEE
Q 010037 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVT 432 (519)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~ 432 (519)
...++.+.+.+..+|+.+- ....+..|+||...|++..|..+..+++|+.|.+|+|||+++. .++.++....+++
T Consensus 327 -rLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 327 -RLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred -eEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 1223445566666676541 2244677999999999999999889999999999999999864 6788888899999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-----eccCCCceEEEEEeeCC--CEEEEEecCCeEEEEECCCC
Q 010037 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~~~~~V~~v~~spdg--~~l~sgs~dg~v~iwdl~~~ 502 (519)
.++.+. .+.+++.--.+..|++||++..++.. ..+|..+|++++|..+. .-|++++.|..+.-|.+...
T Consensus 403 Rvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 403 RVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999998 77788888888999999999876653 45789999999998654 34889999999999998653
No 113
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-19 Score=162.87 Aligned_cols=207 Identities=19% Similarity=0.305 Sum_probs=166.6
Q ss_pred eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeee
Q 010037 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (519)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (519)
.++||..+|+.|+++.+|.+|++|+.|.++.+|--..|+.+.++..|...+.|+...... ...+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s----------------~~li 68 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS----------------KHLI 68 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc----------------ceee
Confidence 368999999999999999999999999999999999999998888888777766554332 2346
Q ss_pred ccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe-----CCCcEEEEECC-------CCeEEEEe
Q 010037 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVG-------IDRCLRVF 425 (519)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs-----~Dg~V~lWdl~-------~~~~~~~~ 425 (519)
+++.+..+.+|+... ......-.-..+|..+.|+++| +++.+. ..+.|.++|++ ..++...+
T Consensus 69 TGSAD~t~kLWDv~t-----Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 69 TGSADQTAKLWDVET-----GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred eccccceeEEEEcCC-----CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 778888888887764 2333333456788899999998 333333 23568888887 44544444
Q ss_pred -cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-e-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 426 -~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.+.+.++.+-|.| -+.+|++|..||.|.+||+++++.+ . ...|...|+.++++||..++++++.|.+-++||+.+.
T Consensus 144 ~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 144 PTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred cCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 4778999999999 8999999999999999999998655 3 4678889999999999999999999999999999998
Q ss_pred eeeec
Q 010037 503 QIFDL 507 (519)
Q Consensus 503 ~l~~~ 507 (519)
+++..
T Consensus 223 ~v~Kt 227 (327)
T KOG0643|consen 223 EVLKT 227 (327)
T ss_pred eeEEE
Confidence 87654
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=4.9e-19 Score=171.62 Aligned_cols=253 Identities=18% Similarity=0.264 Sum_probs=175.8
Q ss_pred CeeeEeecccceeecCCCC--eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCC
Q 010037 230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~--~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg 306 (519)
.++.+..++.+++|+|... ++|+|..-|+|-+||+....+..... ..+..|.++|.+|.|+| +...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence 3455667888899999765 78999999999999996333322222 24678999999999999 446888999999
Q ss_pred cEEEEecccCeeeceeeccCCC--CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037 307 TVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
+|++-|+..+..-..+...... ...+.+.......++ +..-+...+|+.++- +.....+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~----------------~~~~G~f~~iD~R~~---~s~~~~~ 318 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF----------------GDNVGNFNVIDLRTD---GSEYENL 318 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE----------------eecccceEEEEeecC---Cccchhh
Confidence 9999999876543333322111 111111111111111 111112233333221 2224445
Q ss_pred eccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~-----~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd 457 (519)
.-|...|..|+++|.. +|+|++.|++++|||++.-. .+.++.|...|.+..|+|.+++ |++.+.|..|+|||
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEee
Confidence 6688899999999988 99999999999999998532 3566679999999999995555 99999999999999
Q ss_pred cC----CCcEEeeccCC----Cc--eEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 458 VR----RCQVVDYTDIR----EI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 458 ~~----~~~~~~~~~~~----~~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.. .-.....+.|. .. .....|.|+..++++|-.-..|-|||-.+++++
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence 84 22222222222 22 345789999999999999999999999999843
No 115
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.7e-19 Score=178.94 Aligned_cols=238 Identities=22% Similarity=0.353 Sum_probs=187.8
Q ss_pred hhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccc-cccccccceeecCCCCEEEEEEc
Q 010037 215 DAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFS 293 (519)
Q Consensus 215 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fs 293 (519)
..++...+.|..++ ++..|.+.+..++|+|....|++++.||.|++|++.+.... ...+....+|.+|.++|.|+++.
T Consensus 275 ~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 275 DLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred hhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec
Confidence 34455566787777 78888999999999999999999999999999999542211 12344556799999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc
Q 010037 294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (519)
Q Consensus 294 pdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (519)
+++..+++||.||+|+.|++....- -.... ++
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~--------------------------------------------dp-- 385 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQD--PDDSY--------------------------------------------DP-- 385 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCC--ccccc--------------------------------------------Cc--
Confidence 9999999999999999999852211 00000 00
Q ss_pred ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-------------------------------
Q 010037 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------------- 421 (519)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~------------------------------- 421 (519)
......+.||.+.|+.+++++.. .|++++.||+|++|+.....+
T Consensus 386 ----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 386 ----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred ----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence 01134578999999999999988 999999999999998754433
Q ss_pred -------------EEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037 422 -------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC 479 (519)
Q Consensus 422 -------------~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s 479 (519)
+..+. -...++-|.++| ...+.+++..|+.|+++|..++.++ ....|...++++++.
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~ 540 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID 540 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeec
Confidence 00110 113466788888 7889999999999999999999988 578899999999999
Q ss_pred eCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 480 PDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 480 pdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
|+|.+|++++.||.+++|.+....+.+
T Consensus 541 ~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 541 PNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred CCCceEEeecCCceeehhhccchheee
Confidence 999999999999999999987655543
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1e-19 Score=186.12 Aligned_cols=214 Identities=17% Similarity=0.271 Sum_probs=164.9
Q ss_pred eeeEe-ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 010037 231 MARII-DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~-~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I 308 (519)
+.|+. ...+.++..++-..++.++. ..++|+.+........-....+.-+.-.-.+..|+|.. +.++|||++..|.|
T Consensus 34 ~~~~~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 34 MNCKLKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred eeeecccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 44433 34445788888888888765 45777777643322210000000001112456788876 56899999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (519)
.+||+..... ++.+..|..|.
T Consensus 113 ~vWdlnk~~r-----------------------------------------------------------nk~l~~f~EH~ 133 (839)
T KOG0269|consen 113 SVWDLNKSIR-----------------------------------------------------------NKLLTVFNEHE 133 (839)
T ss_pred EEEecCcccc-----------------------------------------------------------chhhhHhhhhc
Confidence 9999854210 12345577899
Q ss_pred CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (519)
Q Consensus 389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~- 464 (519)
..++++.|++.. +|++|+.||+|++||++..+-..++. ....|..|+|+|..+++|+++...|.|++||++....-
T Consensus 134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH
Confidence 999999999976 99999999999999999988877775 77889999999988999999999999999999986533
Q ss_pred -eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
++..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++.
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 6899999999999999999999999999999999987654
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.1e-18 Score=161.73 Aligned_cols=235 Identities=18% Similarity=0.225 Sum_probs=162.3
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
.+.+.++.|+|.+..|++++.||.+++|++...... ....|..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 477888999999999999999999999999865321 12358999999999874 468999999999999998
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
++... .+..+...+.|+...... -..+.++.+..+.+|+++. +....-......|.++
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~----------------~~vIsgsWD~~ik~wD~R~-----~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV----------------GCVISGSWDKTIKFWDPRN-----KVVVGTFDQGKKVYCM 141 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC----------------CeEEEcccCccEEEEeccc-----cccccccccCceEEEE
Confidence 87632 333444455555544221 1234566677777777654 2222222234455555
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-----EEe
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVD 465 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-----~~~ 465 (519)
. -.+ .|+.|+.|..|.+||+++........ .+..+.||++.| ++.=+++++.||.|.+=.+...+ ...
T Consensus 142 ~--v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 142 D--VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred e--ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 3 344 77777777888888877665444222 455677888888 66667777778877776555431 111
Q ss_pred eccCC---------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 466 YTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 466 ~~~~~---------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+..|. .+|++++|+|--+.|+||+.||.|.+||+.+.+
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 22222 369999999998899999999999999998765
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=4.9e-19 Score=173.64 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=179.2
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCcccc--------ccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCC
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDG 306 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg 306 (519)
..++++.|+|.|.+|++.+..-+.+|+|-..... .+..+ ..-+||...++|.+|+|.. ..++|++.||
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm---~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM---YNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh---hccCCceeeeeccccccCcccceEEecCCC
Confidence 4566789999999999999999999998764321 11111 2347999999999999954 5889999999
Q ss_pred cEEEEecccCeeec-eeecc-----CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037 307 TVRVWKVIEHERLD-GFDVQ-----DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (519)
Q Consensus 307 ~I~iWd~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (519)
++|||++...+... .+... ...++.+.|.... .....+..++.+.+|+...+.. ...
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg----------------~~iAagc~DGSIQ~W~~~~~~v-~p~ 354 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG----------------KLIAAGCLDGSIQIWDKGSRTV-RPV 354 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc----------------chhhhcccCCceeeeecCCccc-ccc
Confidence 99999997654322 22111 1122233333222 1245667788888888644332 223
Q ss_pred eeEeeccCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEec---CCCcEEEEEEeeCCCCEEEEEeC----
Q 010037 381 LHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS---HNNYVTSVAFNPVDDNYFISGSI---- 449 (519)
Q Consensus 381 ~~~~~~h~~--~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~---- 449 (519)
.+.-++|.. .|+||+|+++| +|++-+.|.++++||++.. +++.+.. ....-+.++|+| +..+|++|..
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNG 433 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCC
Confidence 444567887 99999999999 9999999999999999864 5555553 455678899999 9999999864
Q ss_pred --CCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 450 --DGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 450 --Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
-|++.+||..+-..+. +.-....|..+.|+|--+.|.+|+.||.+++|-
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 4689999999988774 444467789999999999999999999999874
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.1e-19 Score=171.66 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=159.7
Q ss_pred CCCeEEeeecCCeEEEeeCCcccccccccccc--------------ceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEE
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV 310 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~i 310 (519)
-|+++|.|+.+-.|.|||+.-....+..+... ..-.+|++.|..|.|+.+- +.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999997544333222211 1234799999999998854 58999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
||+.++++. .++..|.+.
T Consensus 271 WD~~~g~p~--------------------------------------------------------------~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGKPK--------------------------------------------------------------SSITHHGKK 288 (463)
T ss_pred EEcCCCCcc--------------------------------------------------------------eehhhcCCc
Confidence 999988753 334568899
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEE-e
Q 010037 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-D 465 (519)
Q Consensus 391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~-~ 465 (519)
|.+++|+|.. .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....++++..||+|+-+|+|+. +++ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 9999999999999999953 333455678889999999988899999999999999999986 555 6
Q ss_pred eccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCC
Q 010037 466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~ 501 (519)
...|.+.|.++++++.- .+|++++.|+.|++|++..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 88999999999999855 4688899999999999864
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=170.69 Aligned_cols=239 Identities=20% Similarity=0.249 Sum_probs=186.1
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I 308 (519)
..+.+|.+.|..++++. ..+++++.|.+|+.|.+... ..+++.+ ...+..|.-+..+..+||||++ |
T Consensus 103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i 169 (433)
T KOG0268|consen 103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--I 169 (433)
T ss_pred heeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeeec-cccccccccccccccccccCce--e
Confidence 35667777777777776 67788889999999998752 2223333 4566777777777889999875 9
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (519)
.|||......+..+......+.++.+.+.....+. .+..+..+++++.+......+.+..
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa---------------s~~sDrsIvLyD~R~~~Pl~KVi~~----- 229 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA---------------SCASDRSIVLYDLRQASPLKKVILT----- 229 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchhee---------------eeccCCceEEEecccCCccceeeee-----
Confidence 99999988888888887777788887777655444 3345667777877765444333332
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
..-+.|+|+|.+ .+++|+.|..++.||++.- .++..+. |.+.|.+|.|+| .|+-|++||.|.+||||.++.+..-.
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchh
Confidence 345789999977 8999999999999999864 4555554 999999999999 99999999999999999999876553
Q ss_pred --eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 466 --YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 466 --~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
...--..|.++.|+.|.+++++|+.|+.|++|...-
T Consensus 309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 333345699999999999999999999999998753
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=9.4e-20 Score=163.96 Aligned_cols=244 Identities=17% Similarity=0.249 Sum_probs=195.0
Q ss_pred Eeecccceeec---CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 234 IIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 234 ~~~~~~~~~~s---p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
|..+|..++|+ |+|-+|+++++|+.-.+.+-+.+... -+|.+|++.|+...++.+...-|+++.|-+.+|
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-------gtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-------GTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-------EeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 34555566665 68999999999998888776654432 368999999999999999989999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
||..++..+..+.. ...+..+.|..+... .++++.+..+.+++.+. ...|..++.+|.+.
T Consensus 86 w~a~tgdelhsf~h-khivk~~af~~ds~~----------------lltgg~ekllrvfdln~---p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 86 WDAVTGDELHSFEH-KHIVKAVAFSQDSNY----------------LLTGGQEKLLRVFDLNR---PKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhh-hheeeeEEecccchh----------------hhccchHHHhhhhhccC---CCCCchhhcCCCCc
Confidence 99999987776643 233344444433322 23344444444444332 23566778999999
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 469 (519)
|..+.|.... .+++++.|++||+||.+++..++.+..+..|+++.+++ ++.+|.++ ..+.|.+||..+..+++....
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeeccC
Confidence 9999999877 88898999999999999999999999999999999999 88877664 567899999999999988888
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
...|.+..++|+...+++|+.|+.++.||..++.-+.
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 8899999999999999999999999999998876443
No 122
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.6e-19 Score=171.30 Aligned_cols=170 Identities=26% Similarity=0.449 Sum_probs=149.3
Q ss_pred cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (519)
Q Consensus 273 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (519)
+.+..+.+..|++.|+-+.||++|+||||++.|.+..||++.....
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---------------------------------- 258 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---------------------------------- 258 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------------------------------
Confidence 3445577899999999999999999999999999999999743321
Q ss_pred eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--C
Q 010037 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--N 429 (519)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~ 429 (519)
-+..+++.+|..+|.-+.|+|+. +|++|+.|..+++||+.++.+...+++. .
T Consensus 259 -------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~ 313 (519)
T KOG0293|consen 259 -------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGF 313 (519)
T ss_pred -------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCC
Confidence 02367788999999999999999 9999999999999999999999999854 8
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-CceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.+.+++|.| |+..|++|+.|+++..||+.....-.|.+.. ..|..++.++||+++++.+.|..|++|+..+.
T Consensus 314 S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 314 SVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred CcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 899999999 9999999999999999999877766666654 45899999999999999999999999998754
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.3e-17 Score=163.36 Aligned_cols=263 Identities=20% Similarity=0.242 Sum_probs=190.6
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCCEEEEEeCCCc
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
+.+++..+.+..++|+|.+..++.....+.+..|+......... ...+..+ ++-|.||+|.++|+ ++||..+|.
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~ 268 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN 268 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence 44666777777789999999888888899999998876543211 1123333 36799999999997 679999999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecC-------CCCeEEeeccCCceeeeee----------eccCCCeeEEEeC
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDKTKS----------LRKSSDLTCVVLP 370 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------~~~s~~~~~~~~~ 370 (519)
|.||+..+.+..+....++..+.++....+. ...+..++....+...... ..+..+ +++-.
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGT 346 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGT 346 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEee
Confidence 9999998888777777777776666554332 1122222211111110000 011111 22222
Q ss_pred Cccccc----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037 371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (519)
Q Consensus 371 ~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~ 445 (519)
.+.+-+ .........+|....+.++.+|+. .++|++.|+.|+||+ ..+++-+.....++.|+.|+| .+ .+|
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va 422 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA 422 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence 222111 122234567899999999999998 999999999999999 566666666788999999999 67 999
Q ss_pred EEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 446 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.|+..|...+.|..+...+.......+++.+.|+|+|.+||+|+.|+.|+||-+..+
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 999999999999999888876666999999999999999999999999999988643
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=3.4e-19 Score=174.05 Aligned_cols=245 Identities=18% Similarity=0.255 Sum_probs=194.9
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
..|.+++++...+++.+|++ |-|+|||+........ . ..-....-..-|.++.+.|||+.|++|++-.++.|||+..
T Consensus 420 EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-v-sqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-V-SQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-c-ccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 33445788889999999875 7899999985432111 0 0001122456799999999999999999999999999977
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
...............|.++..+... ...+....++.+.+|+.+. ...+..|+||...+.||.
T Consensus 497 pTprikaeltssapaCyALa~spDa--------------kvcFsccsdGnI~vwDLhn----q~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDA--------------KVCFSCCSDGNIAVWDLHN----QTLVRQFQGHTDGASCID 558 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCcc--------------ceeeeeccCCcEEEEEccc----ceeeecccCCCCCceeEE
Confidence 6654443433333444333322222 1224456677888888775 345788999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 474 (519)
.+++| .|.||+.|.+||-||+++++.+......+.|.++-.+| .+.+++.|-.++.|.|......+...+..|..-|.
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVL 637 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL 637 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEE
Confidence 99999 99999999999999999999988888889999999999 99999999999999999999888888999999999
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 475 AVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
++.|.+-|+++++.+.|..+..|.+.-|
T Consensus 638 SlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred EEEecccCceeeecCchhhhhhccCccc
Confidence 9999999999999999999999988644
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=4.9e-19 Score=172.82 Aligned_cols=195 Identities=17% Similarity=0.268 Sum_probs=166.2
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~ 319 (519)
|++......++++|+..+.|+|||++. ..+.+.+++|+..|++|.++....|||+++..|-|.|..+.++...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 455555668999999999999999872 2234557899999999999999999999999999999998877643
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
..+.. +....|.-+.|+|.
T Consensus 157 t~f~~-------------------------------------------------------------~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 157 TTFTI-------------------------------------------------------------DSGQSVRLLRYSPS 175 (673)
T ss_pred cceec-------------------------------------------------------------CCCCeEEEeecccc
Confidence 33221 11233557888987
Q ss_pred C--eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEE
Q 010037 400 G--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (519)
Q Consensus 400 ~--~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~ 475 (519)
. +|.+++.+|.|.|||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst 255 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST 255 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence 7 88899999999999999998888775 9999999999998899999999999999999998888777777889999
Q ss_pred EEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 476 VCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 476 v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
++|.++|.+|+.|+..|.|..||++..
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccC
Confidence 999999999999999999999999864
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=168.40 Aligned_cols=256 Identities=16% Similarity=0.163 Sum_probs=188.2
Q ss_pred ccCCCcccccccccCCCCCCccccccCCcccccccc-chhhhhhhhccccccccCCeeeEeecccceeecCCC-CeEEee
Q 010037 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESR-DLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELTLG 253 (519)
Q Consensus 176 ~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g-~~lasg 253 (519)
.-+.|+++++..|++.+- ||.|--+...... .+.....+++..-.++.....+|.+.+-.++|+..- +.||+|
T Consensus 188 ~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg 262 (463)
T KOG0270|consen 188 SGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG 262 (463)
T ss_pred CCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec
Confidence 445588999999999888 9987666544332 222222222222223444566788888778877754 467889
Q ss_pred ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceE
Q 010037 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (519)
Q Consensus 254 s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (519)
+.|.+|++||+..++. .+.+..|.+.|.++.|+| ...+|++|+.|++|++.|.+..... ..
T Consensus 263 saD~TV~lWD~~~g~p-------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-----------~~ 324 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKP-------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-----------GK 324 (463)
T ss_pred CCCceEEEEEcCCCCc-------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-----------Cc
Confidence 9999999999986553 345678999999999999 5679999999999999998742210 00
Q ss_pred EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCc
Q 010037 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT 410 (519)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~ 410 (519)
.| .-.+.|-.++|.|.. .+++++.||+
T Consensus 325 ~w---------------------------------------------------k~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 325 EW---------------------------------------------------KFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred eE---------------------------------------------------EeccceEEEEecCCCceeEEEecCCce
Confidence 00 124568889999987 8889999999
Q ss_pred EEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC---CceEEEEEeeCCC-E
Q 010037 411 VRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR---EIVSAVCYCPDGK-G 484 (519)
Q Consensus 411 V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~spdg~-~ 484 (519)
|+-+|++.. +++.++. |.+.|.+|++++...+++++++.|+.|++|++.....-....|. +...+.++.|+-. .
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence 999999976 7887776 99999999999988899999999999999998754332211111 2255666777653 5
Q ss_pred EEEEecCCeEEEEECCCCeee
Q 010037 485 GIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 485 l~sgs~dg~v~iwdl~~~~l~ 505 (519)
|+.|+..+.++|||+.++.-.
T Consensus 434 la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEecCccceEEEeecccChhH
Confidence 777888889999999876543
No 127
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.6e-18 Score=157.08 Aligned_cols=241 Identities=17% Similarity=0.265 Sum_probs=174.2
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee--eccCCCCceEEEeecCCCCeEEeeccCCcee--
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKID-- 353 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 353 (519)
+++++|.+.|.+|+|+.+|..|++|+.|+++++|++........+ ..+...+..+.+.+.++..++....+.....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 467889999999999999999999999999999999877655444 3344445556666666665555443322110
Q ss_pred -----eeeeeccCCCeeEEEeCCcc-ccc-------------cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 010037 354 -----KTKSLRKSSDLTCVVLPPKV-FRL-------------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL 413 (519)
Q Consensus 354 -----~~~~~~~s~~~~~~~~~~~~-~~~-------------~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~l 413 (519)
....+........+.|.+.. .-. ....+..-......+.-++|+.++ .++.....|+|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 01111111122222222211 000 001111112234567888998777 6666666799999
Q ss_pred EECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecC
Q 010037 414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 414 Wdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
.....-+++..+. |+....||.|+| +|+|||+|+.|..+.+||+..--++ .+..+.-+|..+.|+.||++||+|+.|
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred EeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 9999989988886 999999999999 9999999999999999999987766 467788899999999999999999999
Q ss_pred CeEEEEECCCC-eeeeccccceeEEecCC
Q 010037 492 GNCRFYDIKGM-QIFDLSTTAYLFALLGH 519 (519)
Q Consensus 492 g~v~iwdl~~~-~l~~~~~~~~~~~l~GH 519 (519)
-.|-|=++++| ++++++...+.++.+-|
T Consensus 253 h~IDIA~vetGd~~~eI~~~~~t~tVAWH 281 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIPCEGPTFTVAWH 281 (313)
T ss_pred ceEEeEecccCCeEEEeeccCCceeEEec
Confidence 99999999887 57788877777777665
No 128
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=159.85 Aligned_cols=279 Identities=17% Similarity=0.259 Sum_probs=196.6
Q ss_pred cCCcceeeeecCCCceeEEccCCCchhhhhhcccccCC---CcccccccccCCCC----CCccccccCCccccc-cccch
Q 010037 142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPG----SSSSFVQPLPSRQDE-ESRDL 213 (519)
Q Consensus 142 ~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~l~~v~~---~~~l~~~~f~~~~~----~s~~~v~~l~~~~~~-~~~~~ 213 (519)
.+|.++.|+-.+.|.++..+.++. +.++ |+.+.. ++.|-...|..+-+ .+.. +|.+...-.. ....
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aa-iw~ipe~~~~S~~~t- 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAA-IWQIPEPLGQSNSST- 111 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEE-EEecccccCccccch-
Confidence 358899999988898888777665 3343 666665 44554444443322 1233 5655432111 0000
Q ss_pred hhhhhhhccccccccCCe-eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE
Q 010037 214 VDAKRKVKRGWLKKLGAM-ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF 292 (519)
Q Consensus 214 ~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f 292 (519)
| .....+ +.+..++.|+.|.|++..+|+-. +..|.+|++.........+.. ..-..|....++-+|
T Consensus 112 ----------l-E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 112 ----------L-ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTSGAW 178 (370)
T ss_pred ----------h-hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-cccccccceeccccc
Confidence 0 011111 12234667899999999998875 889999999876653222211 122346777888999
Q ss_pred cc--CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037 293 SL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (519)
Q Consensus 293 sp--dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (519)
+| +|+.+++. .|+++..||+++.++...
T Consensus 179 spHHdgnqv~tt-~d~tl~~~D~RT~~~~~s------------------------------------------------- 208 (370)
T KOG1007|consen 179 SPHHDGNQVATT-SDSTLQFWDLRTMKKNNS------------------------------------------------- 208 (370)
T ss_pred CCCCccceEEEe-CCCcEEEEEccchhhhcc-------------------------------------------------
Confidence 99 78888776 578999999987664222
Q ss_pred CccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~s 446 (519)
.-.+|...|.++.|+|+. +|++|+.||.|+|||.+. ..+++.+. |...|++|.|+|...+++++
T Consensus 209 ------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 209 ------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred ------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 125688889999999987 999999999999999986 45666665 99999999999988999999
Q ss_pred EeCCCeEEEEEcCC------------------------------CcEEeeccCCCceEEEEEee-CCCEEEEEecCCeEE
Q 010037 447 GSIDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCR 495 (519)
Q Consensus 447 gs~Dg~V~iwd~~~------------------------------~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs~dg~v~ 495 (519)
|+.|..|.+|.... +++..+..|.+.|++++|+. |.-.+|+-++||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 99999999997532 11224567889999999987 555677889999998
Q ss_pred EEECCC
Q 010037 496 FYDIKG 501 (519)
Q Consensus 496 iwdl~~ 501 (519)
|=.+..
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 877653
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.8e-19 Score=188.15 Aligned_cols=247 Identities=18% Similarity=0.300 Sum_probs=186.1
Q ss_pred cccceeecCCCCe----EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 010037 237 RHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW 311 (519)
Q Consensus 237 ~~~~~~~sp~g~~----lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iW 311 (519)
+-+.++|.+.+.. ||.|..||.|.+|+..+... -........+..|+++|..+.|++.. +.||+|+.||.|.||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 3445778777766 88899999999999886311 11222334567899999999999955 599999999999999
Q ss_pred ecccCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 312 KVIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 312 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
|+...+...... .....+.++.|...- ......++..+.+.+|+.+.- +++-.+..|..
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkv---------------qhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~ 205 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKV---------------SHILASGSPSGRAVIWDLRKK----KPIIKLSDTPG 205 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhh---------------hHHhhccCCCCCceeccccCC----CcccccccCCC
Confidence 997755433331 122234444443222 222345666778888888753 44555554443
Q ss_pred --CeeEEEEcCCC--eEEEEeCCC---cEEEEECCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 390 --EVLDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 390 --~V~~l~~sp~~--~L~sgs~Dg---~V~lWdl~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
.+..++|+|++ .|++++.|. .|.+||++. ..+++++. |...|.++.|++.|..++++++.|+.|.+|+.++
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 57889999998 788887664 599999985 45777774 9999999999998889999999999999999999
Q ss_pred CcEE-eeccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCe
Q 010037 461 CQVV-DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~ 503 (519)
++++ .+....+++..+.|+|... .+++++.||.|.||.+.+..
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999 4666788999999999765 78889999999999998765
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.6e-17 Score=158.87 Aligned_cols=241 Identities=19% Similarity=0.295 Sum_probs=171.4
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEec
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~ 313 (519)
..++.++.|||....|++++.||+++||.+...... ..+.+.--..+|.+.+|.|+|. .+++++.-...+.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 456678999999999999999999999999854433 2334555578999999999998 8999999999999999
Q ss_pred ccCeeeceeeccCCC-CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 314 IEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
.+.+..+.-...... ...-.|...+...++++.. ..+-+.+..... ...+..++ -.+.|.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------------~~G~I~lLhakT----~eli~s~K-ieG~v~ 348 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------------NNGHIHLLHAKT----KELITSFK-IEGVVS 348 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcc--------------cCceEEeehhhh----hhhhheee-eccEEe
Confidence 887654322211111 1122333333333332222 222222222222 12233333 357799
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcE--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-------
Q 010037 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------- 462 (519)
Q Consensus 393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~------- 462 (519)
.++|+.++ .|++++.+|.|.+||++...+++.+...+.| ++++.++ ++.|||+|+..|.|.|||.++..
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence 99999999 8888899999999999999999999755554 6677778 89999999999999999965421
Q ss_pred -----------------------------------EEe---------ec---cCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037 463 -----------------------------------VVD---------YT---DIREIVSAVCYCPDGKGGIVGTMTGNCR 495 (519)
Q Consensus 463 -----------------------------------~~~---------~~---~~~~~V~~v~~spdg~~l~sgs~dg~v~ 495 (519)
+++ |. ..-+.|++++|+|.|-+||+|..+|.|.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 110 00 1123489999999999999999999999
Q ss_pred EEECC
Q 010037 496 FYDIK 500 (519)
Q Consensus 496 iwdl~ 500 (519)
+|.+.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99874
No 131
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=5.8e-18 Score=161.38 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=153.0
Q ss_pred CCeEEe---eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeecee
Q 010037 247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF 322 (519)
Q Consensus 247 g~~las---gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~ 322 (519)
.+++|. ++.-|-..|..+.+..+.-... -.+.||+++|..++|+| +.+.||||++|.+|.||++..+.....+
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~---P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASY---PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCC---CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 345544 3444556666555433222111 23579999999999999 6679999999999999999766532221
Q ss_pred eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--
Q 010037 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-- 400 (519)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-- 400 (519)
.+|+..+.+|...|--++|+|..
T Consensus 121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence 25678899999999999999976
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-ccCCC-ceEEEEE
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVCY 478 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~-~V~~v~~ 478 (519)
.|++++.|.+|.+||+.+++.+.++.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++.. ..|.+ .-..+.|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 99999999999999999999999999999999999999 999999999999999999999999853 34543 3456778
Q ss_pred eeCCCEEEEEec---CCeEEEEECCC
Q 010037 479 CPDGKGGIVGTM---TGNCRFYDIKG 501 (519)
Q Consensus 479 spdg~~l~sgs~---dg~v~iwdl~~ 501 (519)
-.+|..+.+|-. +..+-+||..+
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccCceeeeccccccccceeccCccc
Confidence 888885555543 55688888754
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=2.5e-16 Score=155.30 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=158.8
Q ss_pred ccceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeccc
Q 010037 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (519)
Q Consensus 238 ~~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg~I~iWd~~~ 315 (519)
+..++|+|++..+ +++..++.|++|+....... ..+..+.. +..+.|+|+++.|+++ +.|+.|++||+.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3458999999976 56778999999998754321 12333333 5678999999977654 5689999999998
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
.+.+..+.... .+..+.+.++.. .+...... ...+..++..... ...... ....+.+++
T Consensus 105 ~~~~~~~~~~~-~~~~~~~~~dg~--~l~~~~~~-------------~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~ 163 (300)
T TIGR03866 105 RKVLAEIPVGV-EPEGMAVSPDGK--IVVNTSET-------------TNMAHFIDTKTYE----IVDNVL-VDQRPRFAE 163 (300)
T ss_pred CeEEeEeeCCC-CcceEEECCCCC--EEEEEecC-------------CCeEEEEeCCCCe----EEEEEE-cCCCccEEE
Confidence 87666554322 234444444332 11111111 1112223322211 111111 223457899
Q ss_pred EcCCC-eEE-EEeCCCcEEEEECCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEE-EeCCCeEEEEEcCCCcEE
Q 010037 396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHN--------NYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 396 ~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~h~--------~~V~~v~fsp~d~~~l~s-gs~Dg~V~iwd~~~~~~~ 464 (519)
|+|++ +|+ ++..++.|++||+.+++.+..+... .....++|+| +++++++ ...++.|.+||+++++++
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999 664 5556999999999999887766411 1235688999 8887544 455678999999998887
Q ss_pred eeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCCeee
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~l~ 505 (519)
....+...+.+++|+|+|++|+++ ..+|.|++||+.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 243 DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 655556689999999999999886 46899999999998863
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.5e-17 Score=154.62 Aligned_cols=220 Identities=15% Similarity=0.226 Sum_probs=158.3
Q ss_pred cCCeeeEeecccceeecCCCC--eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 228 LGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~--~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
++.+..|.+.++++.|.+.-. .|++|+.||.|.+|+.. .+.....+++|.+.|+.++.+|.|++-++.+.|
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcCC
Confidence 456667778888889988876 99999999999999987 345567899999999999999999999999999
Q ss_pred CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
+.+++|++.+|+....+++..... .+.|.+.+...++.. ...+-+|...... +...-
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~-----------------~~~i~i~q~d~A~-----v~~~i 205 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSG-----------------RNKIDIYQLDNAS-----VFREI 205 (362)
T ss_pred ceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEe-----------------ccEEEEEecccHh-----Hhhhh
Confidence 999999999998766665544332 244443221111110 0011111111110 11111
Q ss_pred ccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEE--eeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC- 461 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~iwd~~~~- 461 (519)
.....+.|+.|...+.|++|..|+.|++||.....++..+. |...|-.+.+ +| .+.||++++.||.|+|||++..
T Consensus 206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEccccc
Confidence 12255888888887899999999999999999988888875 9999999985 34 6789999999999999999876
Q ss_pred ----cEEeeccCCCceEEEEE
Q 010037 462 ----QVVDYTDIREIVSAVCY 478 (519)
Q Consensus 462 ----~~~~~~~~~~~V~~v~~ 478 (519)
..+.....+..++|+..
T Consensus 285 k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 285 KKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCcceeEEeecCCccceeee
Confidence 33333334555555543
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=171.57 Aligned_cols=266 Identities=17% Similarity=0.260 Sum_probs=192.3
Q ss_pred eecccceeecCCCCe-EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 235 IDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~-lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
..+|.+++|..||.. +|+|+..|.+.+||+++.+... +...+|.+.|..+.|.|....|+|++.|..+++|=.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 467788999999975 5668888999999999765432 234579999999999999999999999999999976
Q ss_pred ccCe----eeceeeccCCCCceEEEeecCCCCeEEeeccC----------------------------------------
Q 010037 314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK---------------------------------------- 349 (519)
Q Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 349 (519)
.++. .++.-..|..++.|+.+.......+.....+.
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 6443 23333455556666655432221111111000
Q ss_pred --------Ccee--eeeeeccCCCeeEEEeCCc-------------------------------------------cccc
Q 010037 350 --------EKID--KTKSLRKSSDLTCVVLPPK-------------------------------------------VFRL 376 (519)
Q Consensus 350 --------~~~~--~~~~~~~s~~~~~~~~~~~-------------------------------------------~~~~ 376 (519)
.... ............+..|+.+ .+.+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 0000 0000000001111111110 0111
Q ss_pred c-ccceeEe---eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037 377 L-EKPLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (519)
Q Consensus 377 ~-~~~~~~~---~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (519)
. +-....+ ..|.++|+.++...-+ .+++++.+|.+++||.++...+..+.-...++++..+. ....++.+..|-
T Consensus 478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence 1 1112233 4789999999998877 99999999999999999999999998888999999998 788999999999
Q ss_pred eEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 452 KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 452 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.|+++|+.+.+++ .+.+|.+.|++++|+|||++|++++.|++|++||+.++++++.
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 9999999999988 5888999999999999999999999999999999999998763
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=172.67 Aligned_cols=202 Identities=17% Similarity=0.321 Sum_probs=162.1
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
++...-+...++|+-+|+++|.|+.|-.|++-+......+ ..+.+|+++|.+|.|+|++.+||+.+-||+|+|
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 3444456667899999999999999999999998865543 357899999999999999999999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
|+++++.+...+..-..... ......
T Consensus 165 w~~~~~~~~~tl~~v~k~n~------------------------------------------------------~~~s~i 190 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNE------------------------------------------------------FILSRI 190 (933)
T ss_pred EEcccchhhhhcccCCcccc------------------------------------------------------ccccce
Confidence 99998887655532111000 001445
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~ 466 (519)
+..++|+|++ .|+..+.|+.|++|+..+...+..+. +...+.+++|+| +|.|||+++.||.|.|||+.+.. .
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~ 266 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R 266 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence 6778999997 99999999999999999999888875 555699999999 89999999999999999999822 2
Q ss_pred ccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw 497 (519)
......|.+++|.|+++.+-.-...|...+|
T Consensus 267 ~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 4456789999999999877665555554444
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=162.02 Aligned_cols=243 Identities=16% Similarity=0.222 Sum_probs=187.4
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
...+.++|++.+.+.||++-.+|.|-||++.. ..+....+.++. ..|-+++|++ +..|++.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence 35667899999999999999999999999875 334444566654 6899999995 456889999999999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.+++.+..++.....+..++..+.... ..+. +.++.+..+....-.+. ....+...++.|.+
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~--l~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTI--LAIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLS 159 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccce--EEee--------------cCCceEEEEecCCceEE--EEeecccccceEEE
Confidence 999998888877777777766655422 2222 22222222222111111 12233445789999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
++|+|++ .|++|+.||.|++||+.++..+.... ....|++|.|-. ...+++|..-|+|.+||...+.+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcch
Confidence 9999999 79999999999999999998777321 334678888875 56899999999999999999998
Q ss_pred Ee-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 464 VD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 464 ~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
++ ...|...|.+++..+++.++++++.|+.|.-|...+++-
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 84 778899999999999999999999999999998877643
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=9.8e-18 Score=173.04 Aligned_cols=194 Identities=18% Similarity=0.319 Sum_probs=166.2
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
.+++.++-|++.+.|+..|.|-+++++.+-..-+-. .-.+|.++|+.++...-++.+++++.+|.+++||..+...
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 358899999999999999999999998654332200 1257999999999998889999999999999999977664
Q ss_pred eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
+..+.. ...+.++.++.
T Consensus 528 ~~~l~l---------------------------------------------------------------~~~~~~iv~hr 544 (910)
T KOG1539|consen 528 KKSLRL---------------------------------------------------------------GSSITGIVYHR 544 (910)
T ss_pred eeeecc---------------------------------------------------------------CCCcceeeeee
Confidence 433321 23456666666
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEE
Q 010037 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476 (519)
Q Consensus 399 ~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 476 (519)
.. .++++..|-.|+++|+.+.+.++.|. |.+.|++++|+| +|++|++++.|++||+||+.++.++.......+.+++
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl 623 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL 623 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence 65 88999999999999999999999997 999999999999 9999999999999999999999999988889999999
Q ss_pred EEeeCCCEEEEEecC-CeEEEEECC
Q 010037 477 CYCPDGKGGIVGTMT-GNCRFYDIK 500 (519)
Q Consensus 477 ~~spdg~~l~sgs~d-g~v~iwdl~ 500 (519)
.|+|+|.+||+...| .-|++|.-.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999998 459999754
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=3.6e-17 Score=151.21 Aligned_cols=222 Identities=12% Similarity=0.142 Sum_probs=162.7
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC--EEEEEeCCCcEEEE
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW 311 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~I~iW 311 (519)
|..++-+++|+.+|..+++|+.|+.+++||+..... +.+..|.++|.++.|-+... .|+||+.|++|+.|
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 456666789999999999999999999999985432 35678999999999988665 89999999999999
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec----c
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----H 387 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----h 387 (519)
|.+....+..+++++.. .+ .+-...++.+ +..+..+.+++.... ..+++. -
T Consensus 143 D~R~~~pv~t~~LPeRv---Ya--~Dv~~pm~vV--------------ata~r~i~vynL~n~------~te~k~~~SpL 197 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERV---YA--ADVLYPMAVV--------------ATAERHIAVYNLENP------PTEFKRIESPL 197 (347)
T ss_pred ccCCCCeeeeeecccee---ee--hhccCceeEE--------------EecCCcEEEEEcCCC------cchhhhhcCcc
Confidence 99988888777765431 11 1111111111 122222333332111 111121 2
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Eec-CC---------CcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFS-HN---------NYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~-h~---------~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
+-.+.|++..++. ..+.|+-.|.+-|..+..+.+.. +|+ |. ..|++|+|+| ....|++.+.||++.
T Consensus 198 k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 198 KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFS 276 (347)
T ss_pred cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEE
Confidence 3468899988888 77999999999999998863333 333 43 3588999999 677899999999999
Q ss_pred EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEe
Q 010037 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs 489 (519)
+||-.....+ ....+..+|++.+|+.+|.++|-+.
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999887666 4688999999999999999887653
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-16 Score=148.51 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=163.7
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
++-+.+|.+ ...+++|+-||.|+.+|+..+... .+..|..+|.||.+++-...+++||.|++|++||.+..
T Consensus 56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred ceeeeeccC-CceEEEeccCceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 333457777 568899999999999999865532 35679999999999998888999999999999999864
Q ss_pred eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (519)
.....+... ..+++++.... ..+.+..+..+.+|+.+...... ...-..-+-.+.|++.
T Consensus 127 ~~~~~~d~~--------------kkVy~~~v~g~-----~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~ 185 (323)
T KOG1036|consen 127 VVVGTFDQG--------------KKVYCMDVSGN-----RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVAL 185 (323)
T ss_pred ccccccccC--------------ceEEEEeccCC-----EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEE
Confidence 333332221 22333333222 22445666777788877654432 1111234567899999
Q ss_pred cCCC-eEEEEeCCCcEEEEECCCC----eEEEEec-C---------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 397 SKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H---------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 397 sp~~-~L~sgs~Dg~V~lWdl~~~----~~~~~~~-h---------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
-|++ -++.++-||.|.+=.+... .....|+ | -.+|++|+|+| -...|+||+.||.|.+||+.+.
T Consensus 186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcch
Confidence 9987 8888899999998776655 2222332 2 24799999999 6889999999999999999988
Q ss_pred cEE-eeccCCCceEEEEEeeCCCEEEEEec
Q 010037 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTM 490 (519)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~l~sgs~ 490 (519)
+.+ ++......|.+++|+.||..||+|+.
T Consensus 265 Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 766 56666788999999999999999885
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=2.1e-17 Score=161.74 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=197.5
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
+.++.+.|||+.|++|+.-.++.|||+......+. .++..-.-..++++.+||.+..+++..||.|.|||+....
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 34577999999999999999999999985543332 1233333457889999999999999999999999999999
Q ss_pred eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (519)
.+..++.+.....|+.+..++ ....+++.+.++..|+.+..+...+ ......|.++.++
T Consensus 543 ~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~c 601 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYC 601 (705)
T ss_pred eeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccC
Confidence 999999999999998876554 3456788888999998876432111 1235789999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEE
Q 010037 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476 (519)
Q Consensus 398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 476 (519)
|++ +|+.|-.++.|-|......+..+.-.|.+.|.++.|.+ .|++|++.+.|..+..|...-+..+........|.++
T Consensus 602 P~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsC 680 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 680 (705)
T ss_pred CCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcceee
Confidence 999 99999999999999888777666667999999999999 9999999999999999999999888777778899999
Q ss_pred EEeeCCCEEEEEecCCeEEEEEC
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl 499 (519)
..+.|.++|++|+.|....||.+
T Consensus 681 DIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 681 DISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999888875
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.2e-17 Score=148.38 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=166.0
Q ss_pred ccccCCeeeEeecccceeecC--CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEE
Q 010037 225 LKKLGAMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLA 300 (519)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~La 300 (519)
.+.+..+.+|..++-.++|.. .|.+||+++.||.|.||....+.. ....+...|...|++++|.|. |-.||
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-----~k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-----TKAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-----hhhhhhhhhcccceeecccccccceEEE
Confidence 345667888999998888866 899999999999999999886532 233456789999999999994 56899
Q ss_pred EEeCCCcEEEEecccC---eeeceeeccCCCCceEEEeecCCCCeEEeeccCCce-eeeeeeccCCCeeEEEeCCccccc
Q 010037 301 SGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRL 376 (519)
Q Consensus 301 Sgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~ 376 (519)
.++.||.|.|.++... ........|...+..+.+.+........ +.... .....+.++.+..+.+|....-.
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~---~~~~~~~~krlvSgGcDn~VkiW~~~~~~- 196 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV---DQGPAAKVKRLVSGGCDNLVKIWKFDSDS- 196 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc---ccCcccccceeeccCCccceeeeecCCcc-
Confidence 9999999999998765 1223345566667777776664321111 11111 13455678888888888765431
Q ss_pred cccceeEeeccCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC--eEEEEec--CCCcEEEEEEeeCCCCEEEEE
Q 010037 377 LEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID--RCLRVFS--HNNYVTSVAFNPVDDNYFISG 447 (519)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~~-----~L~sgs~Dg~V~lWdl~~~--~~~~~~~--h~~~V~~v~fsp~d~~~l~sg 447 (519)
-+.-+.|.+|.+.|.+++|.|.- .|++++.||+|.||..+.. ....++- ....+..+.|++ .+++|+.+
T Consensus 197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs 274 (299)
T KOG1332|consen 197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVS 274 (299)
T ss_pred -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEe
Confidence 13344589999999999999953 8999999999999987632 2222222 567899999999 99999999
Q ss_pred eCCCeEEEEEcC
Q 010037 448 SIDGKVRIWEVR 459 (519)
Q Consensus 448 s~Dg~V~iwd~~ 459 (519)
+.|.+|.+|--.
T Consensus 275 ~GdNkvtlwke~ 286 (299)
T KOG1332|consen 275 GGDNKVTLWKEN 286 (299)
T ss_pred cCCcEEEEEEeC
Confidence 999999999654
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.75 E-value=2.1e-17 Score=167.52 Aligned_cols=211 Identities=21% Similarity=0.334 Sum_probs=166.7
Q ss_pred ccccCCeeeEeecccceeecCCCCeEEeeecCC-----eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE
Q 010037 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (519)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg-----~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (519)
+.....+.+|--.+.+++.+|+++++|++++.. .|++|+.. .....+.+.+|.-.|+.|+|||||+||
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEE
Confidence 344455778888888999999999999987764 48999876 333445789999999999999999999
Q ss_pred EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 300 aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
++++.|+++.+|........ .+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~-e~--------------------------------------------------------- 609 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKD-EF--------------------------------------------------------- 609 (764)
T ss_pred EEeecCceEEeeeeecccch-hh---------------------------------------------------------
Confidence 99999999999997443210 00
Q ss_pred ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEE---ecCCCcEEEEEEeeCCCC----EEEEEeC
Q 010037 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSI 449 (519)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~---~~h~~~V~~v~fsp~d~~----~l~sgs~ 449 (519)
.....+.|+.-|.+..|+|++ +++|+|.|++|++|..... +.+.. +++...|+.++|.|.+.+ .++.|-.
T Consensus 610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle 689 (764)
T KOG1063|consen 610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE 689 (764)
T ss_pred hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEec
Confidence 012256799999999999999 8999999999999998877 44443 358999999999986554 8899999
Q ss_pred CCeEEEEEcCCC-c------------EEeeccCCCceEEEEEeeC----------CCEEEEEecCCeEEEEECC
Q 010037 450 DGKVRIWEVRRC-Q------------VVDYTDIREIVSAVCYCPD----------GKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 450 Dg~V~iwd~~~~-~------------~~~~~~~~~~V~~v~~spd----------g~~l~sgs~dg~v~iwdl~ 500 (519)
.|.|.+|....- + .-....+...|+.++|.|. ...|++|+.|..++|+++.
T Consensus 690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999999996511 1 1124567778999999974 2347999999999999874
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=1.5e-16 Score=161.31 Aligned_cols=255 Identities=20% Similarity=0.278 Sum_probs=179.5
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc----
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE---- 315 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~---- 315 (519)
..-|+|+++.+++-+..|-.++|..++. . .......+.||.+.|..+.|.|.|.||+|.|.|.+-|++---.
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~--~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDK--T--FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCc--c--ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence 3569999999999999999999983221 1 1222234689999999999999999999999999999986541
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee--------------------------------------
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS-------------------------------------- 357 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 357 (519)
...+..-+.|....+|+.+...... .+.. ...++.+...
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~-FVSg--AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQ-FVSG--ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred eeeecccccccccceeeehccCCce-eeec--ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 1233334555566666666553111 1000 0000000000
Q ss_pred ec--cCCCeeE----EEeC----------Ccc-----ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC-----Cc
Q 010037 358 LR--KSSDLTC----VVLP----------PKV-----FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KT 410 (519)
Q Consensus 358 ~~--~s~~~~~----~~~~----------~~~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D-----g~ 410 (519)
.. ....+.. .-.+ +.. ....-..++++.||...|.+++.+|++ ++++++.. ..
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 00 0000000 0000 000 000113357789999999999999999 88888754 45
Q ss_pred EEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCceEEEEEeeCCCE
Q 010037 411 VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKG 484 (519)
Q Consensus 411 V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~ 484 (519)
|+||+..+-..++.+. |+-.|+.++|+| |++||++.+.|.++.+|........ ....|...|.++.|+|++.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 9999999887777664 999999999999 9999999999999999998554322 36789999999999999999
Q ss_pred EEEEecCCeEEEEECCCC
Q 010037 485 GIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 485 l~sgs~dg~v~iwdl~~~ 502 (519)
++|++.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999999877
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.2e-16 Score=150.71 Aligned_cols=210 Identities=19% Similarity=0.262 Sum_probs=164.6
Q ss_pred CeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCc
Q 010037 230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT 307 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~ 307 (519)
.+.+|...+-.++|.|. +..||+|+.|-+|.||++...............|.+|...|-.|.|+|. .+.|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 34567777777899995 4567889999999999999777655555566789999999999999995 468999999999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.||++.+++.+ .++. |
T Consensus 156 v~iWnv~tgeal--------------------------------------------------------------i~l~-h 172 (472)
T KOG0303|consen 156 VSIWNVGTGEAL--------------------------------------------------------------ITLD-H 172 (472)
T ss_pred EEEEeccCCcee--------------------------------------------------------------eecC-C
Confidence 999999988742 1233 8
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC-cEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRC 461 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~-~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~ 461 (519)
...|+++.|+.+| +|+|++.|+.|||||.++++.+..-. |.+ .-..+.|-. ++.++-+|. .+.++-+||..+-
T Consensus 173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccc
Confidence 9999999999999 99999999999999999999988773 544 344555666 777666654 3778999997653
Q ss_pred c---EEeeccCCCceEEEEEeeCCCEEEE-EecCCeEEEEECCCCe
Q 010037 462 Q---VVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 462 ~---~~~~~~~~~~V~~v~~spdg~~l~s-gs~dg~v~iwdl~~~~ 503 (519)
. .....+..+.|.---|.||.+++.. |-.|+.||.|.+..-.
T Consensus 252 ~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2 2344555666776778888887765 4569999999987644
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=5.8e-17 Score=149.23 Aligned_cols=174 Identities=24% Similarity=0.421 Sum_probs=140.4
Q ss_pred ecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037 281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (519)
Q Consensus 281 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (519)
..|.+.|+++...+ .|+|+++|+.||.|.+||++.......-. ..+- .
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-----li~k----------------------~---- 88 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-----LIAK----------------------H---- 88 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-----ceeh----------------------e----
Confidence 45889999999988 78999999999999999997544211000 0000 0
Q ss_pred cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEe
Q 010037 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (519)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fs 437 (519)
.+.+ ....-.+|.-.|.++.|-|-. .+.+++.|++++|||.++-+....|...+.|++-+++
T Consensus 89 -----~c~v-----------~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 89 -----KCIV-----------AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred -----eeec-----------cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 0000 012235789999999999954 9999999999999999999999999999999999999
Q ss_pred eCC--CCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECCC
Q 010037 438 PVD--DNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 438 p~d--~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~~ 501 (519)
|.. ..++|+|..|-+|++-|+..+... .+.+|.+.|.++.|+|...+ |++|+.||.|++||++.
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 953 357788888999999999999877 58999999999999998765 77899999999999974
No 146
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=2.2e-16 Score=164.29 Aligned_cols=250 Identities=19% Similarity=0.188 Sum_probs=174.0
Q ss_pred ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEe
Q 010037 236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWK 312 (519)
Q Consensus 236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~LaSgs~Dg~I~iWd 312 (519)
..+.++.|+|.. .++|.|..+|+|.+||+.......... .......|..+|+.+.|..+. .-+++++.||.|..|+
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 456678899965 566778999999999999766532211 112345699999999997754 4499999999999998
Q ss_pred cccCeeeceeec------------cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc----
Q 010037 313 VIEHERLDGFDV------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---- 376 (519)
Q Consensus 313 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---- 376 (519)
++.-........ .....+++.|.+..... .+.++..+.+.....+....
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~---------------FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH---------------FIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCce---------------EEEEcCCcEEEEEeccCCcccccc
Confidence 754433111110 11123333444333332 22333333333322222221
Q ss_pred cccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC-CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037 377 LEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (519)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (519)
..++...+..|.++|.++.++|-+ .+++++ |.+|+||... ...++..+. +..+|++++|+|.....|+++..||.
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 124455677899999999999988 445555 9999999988 566666665 77889999999988899999999999
Q ss_pred EEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 453 VRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 453 V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
|.|||+...... .........+.+.|++.|+.|++|...|.+++|++...
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 999999764322 33334666788899999999999999999999999643
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.3e-16 Score=156.49 Aligned_cols=219 Identities=19% Similarity=0.391 Sum_probs=174.6
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (519)
..+.+|++.|.+|...|.|.+||+|+.||+|+||.+.++.|+..+.... .+.|+.|++.....++++....... ....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~-ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVL-IVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceE-EeCc
Confidence 4578999999999999999999999999999999999999999887754 6889999999888887776655411 1111
Q ss_pred ec-------------------cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeC---CCcEEEE
Q 010037 358 LR-------------------KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLW 414 (519)
Q Consensus 358 ~~-------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~---Dg~V~lW 414 (519)
.. ...+..++.|.....+....-++..-.|...|..|.|+..| +|++..- ...|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 00 12234555666554444444566777799999999999999 9888764 4679999
Q ss_pred ECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037 415 QVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTG 492 (519)
Q Consensus 415 dl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg 492 (519)
++.....+.-|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++ .+......|..++.+|.|.-|++|+.|+
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 998887777774 678899999999 6667777664 57999999987777 4566667899999999999999999999
Q ss_pred eEEEEECC
Q 010037 493 NCRFYDIK 500 (519)
Q Consensus 493 ~v~iwdl~ 500 (519)
.+..||+.
T Consensus 630 k~~WfDld 637 (733)
T KOG0650|consen 630 KMCWFDLD 637 (733)
T ss_pred eeEEEEcc
Confidence 99999986
No 148
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=1.8e-16 Score=160.92 Aligned_cols=241 Identities=21% Similarity=0.247 Sum_probs=180.1
Q ss_pred eEEeeecCCeEEEeeCCccccc-------c----c-ccccc---c---------------eeecCCCCEEEEEEccCCCE
Q 010037 249 ELTLGQRMRRVRVHPVKKQSRE-------L----S-SLYTG---Q---------------EFLAHEGSILTMKFSLDGQY 298 (519)
Q Consensus 249 ~lasgs~dg~I~vw~~~~~~~~-------~----~-~~~~~---~---------------~l~~H~~~I~~l~fspdg~~ 298 (519)
.+++++.|++|++|++...... + . ..+.. + ...+..-.|.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3789999999999998751110 0 0 00000 0 11223457999999999999
Q ss_pred EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (519)
Q Consensus 299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (519)
||+|..-|.++||++++.+....+..|+..+.|+.++.... .......++.+..+.+++.... .
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~-------------~~kLLASasrdRlIHV~Dv~rn---y 537 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL-------------TNKLLASASRDRLIHVYDVKRN---Y 537 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh-------------hhHhhhhccCCceEEEEecccc---c
Confidence 99999999999999999988888888888777776654322 2223345556666667665431 2
Q ss_pred cceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~ 449 (519)
.++.++.+|...|+++.|.-+| .+++++.|+.|.+=-.+...-...|. ....++.++..| ...++++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence 4577899999999999998877 89999999987654333221222222 345789999999 8999999999
Q ss_pred CCeEEEEEcCCCcEEe-e---ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 450 DGKVRIWEVRRCQVVD-Y---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 450 Dg~V~iwd~~~~~~~~-~---~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
|..|+|||+.+++..+ + .+|.+....+...|.|.||++.+.|.++.+||..+++++.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 9999999999998874 2 3466778889999999999999999999999998887653
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=147.87 Aligned_cols=152 Identities=24% Similarity=0.400 Sum_probs=133.2
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (519)
Q Consensus 287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (519)
-.|+.|++.|.+||.|+.||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 67999999999999999999999999976542
Q ss_pred EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC------
Q 010037 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------ 439 (519)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~------ 439 (519)
-..+.+|..+|++++|+++| .|+|+|.|..|++||+..+.+++.+...++|+.++|+|.
T Consensus 58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 23467899999999999999 999999999999999999999998887777777777663
Q ss_pred ----------------------------------------CCCEEEEEeCCCeEEEEEcCCCcEEeecc--CCCceEEEE
Q 010037 440 ----------------------------------------DDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVC 477 (519)
Q Consensus 440 ----------------------------------------d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~ 477 (519)
.|+|+++|...|.+.++|..+.+++.... ....|..+-
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII 203 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE
Confidence 57899999999999999999998885322 236788999
Q ss_pred EeeCCCEEEEEecCCeEEEEECC
Q 010037 478 YCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 478 ~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
++..|+.|++-+.|..||.|+++
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EeccCcEEEEecCCceEEEEehh
Confidence 99999999999999999999987
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=4.8e-15 Score=145.57 Aligned_cols=246 Identities=11% Similarity=0.143 Sum_probs=173.9
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
.|-|++|.++|+ +++|..+|.|.||+..... ..+...+|.+.|.+++.-.+|.+ +||+.|+.|..|| ..-
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNY 317 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccE-eecCccceEEecc-ccc
Confidence 455789999986 5699999999999985322 22334499999999999999975 5599999999999 444
Q ss_pred eeeceeeccCCCCceEEEeecCCCC--------eEEeeccCCce-----------------eeeeeeccCCCeeEEEeCC
Q 010037 317 ERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKI-----------------DKTKSLRKSSDLTCVVLPP 371 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------------~~~~~~~~s~~~~~~~~~~ 371 (519)
+.+...+.++.....-....+.... ++...+...-. .....++.+.+..+.+|+.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~ 397 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND 397 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence 4444444444333222222222221 11111111000 1112245556666777763
Q ss_pred ccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (519)
+. +.-. +.-..++.|+.|+|.|.++.|+..|...+.|.++...+..-..+.+++++.|+| +|.+||.|+.|+
T Consensus 398 ~k------~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 398 HK------LEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred Cc------eeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCC
Confidence 22 1111 223567899999999999999999999999999977777666789999999999 999999999999
Q ss_pred eEEEEEcCCC-cEE-e-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 452 KVRIWEVRRC-QVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 452 ~V~iwd~~~~-~~~-~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.|+||-+... ... . -..+..+|+.+.|++|+++|.+-+.|-.|..|...
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 9999998754 322 2 22334899999999999999999999999999443
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=3e-16 Score=158.18 Aligned_cols=254 Identities=14% Similarity=0.193 Sum_probs=154.9
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
.+..++|.|||..|+.+. +.++.|||...+. ..+++++|++.|+|++|+.||+.+|+|+.|..|.+|.-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 566799999999988874 4579999988654 34578999999999999999999999999999999986433
Q ss_pred eeeceeeccCCCCceEEEeecCCCCeEEe-------eccCCce------eeeeeeccCCCeeEEEeCCcccc-----ccc
Q 010037 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPI-------DVDKEKI------DKTKSLRKSSDLTCVVLPPKVFR-----LLE 378 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~-----~~~ 378 (519)
..++ ..|...+.|+.|.+-......+. +.....+ .+.....-..++.+......... ..+
T Consensus 86 G~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 86 GILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred ceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 3221 23455677777776543322211 1100000 01111111122222222111111 112
Q ss_pred cceeEeec---cCCCeeEEEEcCCC------eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 010037 379 KPLHEFQG---HSSEVLDLSWSKNG------FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 379 ~~~~~~~~---h~~~V~~l~~sp~~------~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~ 449 (519)
++...+.. .+.+|++++|+|.. .++......++.+|.+.....-+.-...-...|+++.| +|.|++.|+.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGs 242 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGGS 242 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEccC
Confidence 22233333 23345555555552 34444444444444443222111212233344555555 7888888888
Q ss_pred CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
|+.+.+|-...-.+-.......+|+.++..|+++.++.|+.||+|.-|++..
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9988888655444445666788999999999999999999999999999853
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=2e-15 Score=148.84 Aligned_cols=187 Identities=14% Similarity=0.216 Sum_probs=140.8
Q ss_pred CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeecc
Q 010037 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
+..+++++.|+.|++|+...... .+.+..|. .+.++.|+|+++.| ++++.++.|++||+.+++....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--- 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--- 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---
Confidence 35678899999999999875432 22344444 46789999999976 56778899999998776532211
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL- 403 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~- 403 (519)
..+. .+..++|+|++ .++
T Consensus 70 -----------------------------------------------------------~~~~-~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 70 -----------------------------------------------------------PSGP-DPELFALHPNGKILYI 89 (300)
T ss_pred -----------------------------------------------------------cCCC-CccEEEECCCCCEEEE
Confidence 1111 23567899998 554
Q ss_pred EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC-eEEEEEcCCCcEEeeccCCCceEEEEEeeCC
Q 010037 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg 482 (519)
+++.++.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 45678999999999998888887666688999999 999999888765 5778899988776543344556789999999
Q ss_pred CEEEEE-ecCCeEEEEECCCCeee
Q 010037 483 KGGIVG-TMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 483 ~~l~sg-s~dg~v~iwdl~~~~l~ 505 (519)
++|+++ ..+|.|++||+.++++.
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceee
Confidence 988655 46899999999988653
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=9.1e-17 Score=150.13 Aligned_cols=188 Identities=27% Similarity=0.466 Sum_probs=143.8
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeeceeec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDV 324 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~~~~ 324 (519)
...++|+|+.-|.|+|.|+.+.. ....+.+|...|+.|+|.|+. ++|++|+.|..||+|++++..++..+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG- 175 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG- 175 (385)
T ss_pred CCeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-
Confidence 35689999999999999987544 334588999999999999965 799999999999999999988654332
Q ss_pred cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE
Q 010037 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (519)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~ 403 (519)
-+.||.+.|.++.|+++| +|+
T Consensus 176 ----------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 176 ----------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred ----------------------------------------------------------ccccccCcEEEEEEcCCCCeee
Confidence 246788899999999988 999
Q ss_pred EEeCCCcEEEEECCCCeE-------------------------EEEec----CCCcEEE---------------------
Q 010037 404 SSSADKTVRLWQVGIDRC-------------------------LRVFS----HNNYVTS--------------------- 433 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~~~~-------------------------~~~~~----h~~~V~~--------------------- 433 (519)
++++|.+|++|++...+. ...|. |..+|.|
T Consensus 198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWK 277 (385)
T ss_pred ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEe
Confidence 999999999998872210 00110 3333322
Q ss_pred -----------------------------------EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCce
Q 010037 434 -----------------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIV 473 (519)
Q Consensus 434 -----------------------------------v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V 473 (519)
.+|+| -..+||.|.+.|+|.+||++..... ........|
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tV 356 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTV 356 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEecccccee
Confidence 22334 4567888999999999999886653 223345679
Q ss_pred EEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 474 SAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 474 ~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
...+|+.||..|+..+.|+.|.-||..
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999999999853
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=4.1e-17 Score=156.29 Aligned_cols=207 Identities=25% Similarity=0.415 Sum_probs=155.3
Q ss_pred ecccceeecCCCC-eEEeeecCCeEEEeeCCccccccc--cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 236 ~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
..+.++.|.++.. .+|+|+.|..|+||.+......-. .+.....+..|...|+++.|+|+|..||||+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4556678888877 999999999999998875443321 2333346788999999999999999999999999999998
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
...-... .... . . ............+.+|...|.
T Consensus 94 ~~~~~~~------~~d~-e-------------~--------------------------~~~ke~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 94 QGDVRIF------DADT-E-------------A--------------------------DLNKEKWVVKKVLRGHRDDIY 127 (434)
T ss_pred ecCcCCc------cccc-h-------------h--------------------------hhCccceEEEEEecccccchh
Confidence 6531100 0000 0 0 000000112455778999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc--
Q 010037 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-- 468 (519)
Q Consensus 393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-- 468 (519)
.++|+|++ ++++++.|..+++||+..++.+..+. |..+|..++|.| -.+|+++-+.|...+++.+...+++....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 99999999 99999999999999999999999886 999999999999 89999999999988888876654332111
Q ss_pred ------------------CC----CceEEEEEeeCCCEEEEEe
Q 010037 469 ------------------IR----EIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 469 ------------------~~----~~V~~v~~spdg~~l~sgs 489 (519)
|. .-...++|+|||.+|++..
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 11 1145689999999988854
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.2e-16 Score=146.46 Aligned_cols=189 Identities=20% Similarity=0.335 Sum_probs=149.4
Q ss_pred CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
..+|++...|.|++|+... ....+++++|...++.++|.. ....+.+|+.||+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--
Confidence 5788999999999999874 233457889999999999987 46789999999999999998766433322
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC-CCeeEEEEcCCC-eEE
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL 403 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~-~L~ 403 (519)
+.+|. .+..|++-.-++ .++
T Consensus 112 ----------------------------------------------------------~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 112 ----------------------------------------------------------WTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred ----------------------------------------------------------ccCCCCCcceEeeccCcCCeEE
Confidence 22222 344555554333 555
Q ss_pred EEe----CCCcEEEEECCCCeE-EEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC----cEEeeccCCCc
Q 010037 404 SSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTDIREI 472 (519)
Q Consensus 404 sgs----~Dg~V~lWdl~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~----~~~~~~~~~~~ 472 (519)
+|+ .+-.|.+||++..+. +..+. |.+.||+|+|+|.+.++|++||.||.|.|||+... .++....+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 467799999998876 66664 99999999999999999999999999999999864 24467788888
Q ss_pred eEEEEEeeCC-CEEEEEecCCeEEEEECCCCe
Q 010037 473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 473 V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~ 503 (519)
|..+.|..++ +.|.+-+..+...+|+++.+.
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9999999888 458888999999999998775
No 156
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.3e-16 Score=150.63 Aligned_cols=203 Identities=18% Similarity=0.295 Sum_probs=162.4
Q ss_pred CeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC
Q 010037 248 HELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (519)
Q Consensus 248 ~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~ 326 (519)
.+++++ .....|.+|.+.+...... ..--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~------ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN------ 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH------
Confidence 444444 3445799999886554331 11236789999999999999999999999999999987543
Q ss_pred CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE
Q 010037 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405 (519)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg 405 (519)
.+.+|-..|+|+.|+.+| +|+||
T Consensus 118 --------------------------------------------------------v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 118 --------------------------------------------------------VLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred --------------------------------------------------------HHHhhccceeEEEEeCCCcEEEec
Confidence 346788999999999999 99999
Q ss_pred eCCCcEEEEECC---------CCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037 406 SADKTVRLWQVG---------IDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (519)
Q Consensus 406 s~Dg~V~lWdl~---------~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 474 (519)
+.||.|.+|.+. +-+++..|. |.-.|+.+...+. -...++++|.|.++++||+..+.++........+.
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~ 221 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK 221 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcce
Confidence 999999999863 345667775 9999999999872 24689999999999999999999998888889999
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEECCCCeeeec--------cccceeEEecCC
Q 010037 475 AVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL--------STTAYLFALLGH 519 (519)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~--------~~~~~~~~l~GH 519 (519)
+++..|-+..+.+|+.+|.|.+.++....-+.. .....+..+.||
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 999999999999999999999988865432211 334456666666
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.3e-15 Score=132.18 Aligned_cols=233 Identities=21% Similarity=0.366 Sum_probs=165.0
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCcccc---ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
+-+++|.+++|++|..+|+|.+..++.... +.......-..++|.++|+.|+|. ..+|++|+ ||.|+-|...+.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 358999999999999999999998864221 111111222458999999999998 45777776 599999988654
Q ss_pred ee----eceeeccC---------CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037 317 ER----LDGFDVQD---------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (519)
Q Consensus 317 ~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (519)
.. ...+.... ..+..+...+... ..+....++.++.++.... +...+
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G----~i~r~ 151 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDG----RIQRE 151 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCC----EEEEE
Confidence 32 11111110 1111222222221 1233446777777777654 34688
Q ss_pred eeccCCCeeEEEE-cCCCeEEEEeCCCcEEEEECCCCeEEEEec---C--------CCcEEEEEEeeCCCCEEEEEeCCC
Q 010037 384 FQGHSSEVLDLSW-SKNGFLLSSSADKTVRLWQVGIDRCLRVFS---H--------NNYVTSVAFNPVDDNYFISGSIDG 451 (519)
Q Consensus 384 ~~~h~~~V~~l~~-sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---h--------~~~V~~v~fsp~d~~~l~sgs~Dg 451 (519)
++||+..|.++.- +.++.+++|+.||++||||++++++++.+. | ...|-+++. +..++++|+ ..
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GP 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CC
Confidence 9999999999987 445599999999999999999999998884 2 235666665 456777765 56
Q ss_pred eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 452 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.+.+|.++..+..........+..+.|..| .+++++....|.-|.+.+
T Consensus 228 ~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 899999999999988888889999999655 677777777788888754
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-15 Score=141.46 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=157.4
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecC--CCCeEEeeecCC
Q 010037 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDHELTLGQRMR 257 (519)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp--~g~~lasgs~dg 257 (519)
||.++..+-+.++. ||++-.. .+-|.......+|...+..+.|.+ -|+.+|+++.|+
T Consensus 25 GRRmAtCSsDq~vk-----I~d~~~~----------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 25 GRRMATCSSDQTVK-----IWDSTSD----------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred CceeeeccCCCcEE-----EEeccCC----------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 77788887777777 7765211 111222223344445555555543 688999999999
Q ss_pred eEEEeeCCcccccc--ccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCeee------ceee----
Q 010037 258 RVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERL------DGFD---- 323 (519)
Q Consensus 258 ~I~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~~~------~~~~---- 323 (519)
++.||.-.....+. .......++......|+.++|.| -|-.||+++.||.+|||+....-.+ ..++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999874322222 22334456778889999999999 5678999999999999987554322 2222
Q ss_pred ---ccCCCCceEEEeecCCC-CeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 324 ---VQDTDPSCLYFTINHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 324 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
.+.....|+.|++.... +.+++...... ..-..+.+|........-..+.++.+|..+|++|+|.|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a---------~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA---------PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCC---------ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 12233445555544322 22222222110 000111222111100011235567799999999999996
Q ss_pred C-----eEEEEeCCCcEEEEECCCC--------------------eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037 400 G-----FLLSSSADKTVRLWQVGID--------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 400 ~-----~L~sgs~Dg~V~lWdl~~~--------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (519)
- .|++++.|| |+||+++.. +.+..+. |+..|..+.|+- .|..|++.+.||.|
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~V 312 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCV 312 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCcee
Confidence 3 889999999 999998731 1122232 999999999998 89999999999999
Q ss_pred EEEEcC
Q 010037 454 RIWEVR 459 (519)
Q Consensus 454 ~iwd~~ 459 (519)
|+|...
T Consensus 313 RLWkan 318 (361)
T KOG2445|consen 313 RLWKAN 318 (361)
T ss_pred eehhhh
Confidence 999754
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=4.9e-16 Score=156.38 Aligned_cols=263 Identities=17% Similarity=0.207 Sum_probs=172.3
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVR 309 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~ 309 (519)
..+|...|-.+.|-|...+|++++.|.+|++||++.....-. ..+.+|++.|.+++|.|. ...|++|+.||.|.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 345666777789999888999999999999999986553221 246899999999999995 46899999999999
Q ss_pred EEecccCeee--c-----eeeccCCCCceEEE--eec-----CCCCe----EEeeccCCceeeeeeeccCCCeeEEEeCC
Q 010037 310 VWKVIEHERL--D-----GFDVQDTDPSCLYF--TIN-----HLSQL----IPIDVDKEKIDKTKSLRKSSDLTCVVLPP 371 (519)
Q Consensus 310 iWd~~~~~~~--~-----~~~~~~~~~~~~~~--~~~-----~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 371 (519)
|||++-.... . ....+........- ... ....+ ..+.+.. .......+..++.+.+|+.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD---e~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD---ESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec---cceeeeccCCCcceEEEee
Confidence 9998654410 0 00001110000000 000 00000 0000000 1111223345889999988
Q ss_pred cccccc--ccc--eeEeecc---CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEecC---CCcEEEEEEee
Q 010037 372 KVFRLL--EKP--LHEFQGH---SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH---NNYVTSVAFNP 438 (519)
Q Consensus 372 ~~~~~~--~~~--~~~~~~h---~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~h---~~~V~~v~fsp 438 (519)
+..... ..+ ...+.-| .-.+.++.....| +|++.+.|+.|.+|++.+.. ++..+.+ ...-..-..+|
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp 327 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP 327 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence 654322 222 2233334 3467788888878 77777779999999998654 3333321 11112234578
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCC
Q 010037 439 VDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~ 502 (519)
++.++++|+.|...++|.+.+.+.- .+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 328 -d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 328 -DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999999987644 578899999999998843 34777899999999999654
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=138.38 Aligned_cols=250 Identities=12% Similarity=0.158 Sum_probs=161.2
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTV 308 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~I 308 (519)
.+..|...+.++.|..++. |.+|...|.|++|.+....... .+. .|...|+.+.--|+ ..|.+-+.|+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3446667777888888776 8899999999999988544322 244 57889999999987 468899999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeE--EeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.+|++..+..+..-.+.-+......++........ ................+.....+.+-+. .-.+
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~~ 148 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SERS 148 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhcc
Confidence 99999775543322221111111111111100000 0000000000000000111111111111 1123
Q ss_pred cCCCeeEEEEcCC-C---eEEEEeCCCcEEEEECCCCeEEEEe-----------cCCCcEEEEEEeeC------------
Q 010037 387 HSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPV------------ 439 (519)
Q Consensus 387 h~~~V~~l~~sp~-~---~L~sgs~Dg~V~lWdl~~~~~~~~~-----------~h~~~V~~v~fsp~------------ 439 (519)
..+.+.|..|.-. + +|+.|-.+|.|.+||+.++..+-.+ .|..+|.++.+.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 4567777776443 2 7788889999999999987433222 15555555544332
Q ss_pred ---------------------------------CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEE
Q 010037 440 ---------------------------------DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGG 485 (519)
Q Consensus 440 ---------------------------------d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l 485 (519)
|++.+|+++.|+.||||..++.+.+ .+..|...|++++|+||...+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 8899999999999999999999888 578899999999999999999
Q ss_pred EEEecCCeEEEEEC
Q 010037 486 IVGTMTGNCRFYDI 499 (519)
Q Consensus 486 ~sgs~dg~v~iwdl 499 (519)
|.++.|+.|-+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=153.00 Aligned_cols=241 Identities=15% Similarity=0.236 Sum_probs=166.4
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeece--ee
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD 323 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~--~~ 323 (519)
....||.+..+|.|.++|.......+.. .......+|...|..+.|-|-...|++++.|.++++||+.+.++... +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 3456788999999999998865533111 11234678999999999999667899999999999999999988766 66
Q ss_pred ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc-----------------------cccc
Q 010037 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----------------------LEKP 380 (519)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----------------------~~~~ 380 (519)
.|...+..++|.+.....+ ..++.++.+.+|+.+.... ..+.
T Consensus 142 GH~~SvkS~cf~~~n~~vF---------------~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVF---------------CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred ccccccchhhhccCCCcce---------------eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 6666666666665554332 3455555555555432210 1122
Q ss_pred eeEeeccCCCeeE---EEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEec---------C---CCcEEEEEEeeCCCCE
Q 010037 381 LHEFQGHSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNY 443 (519)
Q Consensus 381 ~~~~~~h~~~V~~---l~~sp~~-~L~sgs~-Dg~V~lWdl~~~~~~~~~~---------h---~~~V~~v~fsp~d~~~ 443 (519)
++...+|...|.+ +.+..|. .|++++. |+.|+|||++......... | ...++++.... .|.+
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~ 285 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTY 285 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCe
Confidence 3344556655555 4444555 9998887 9999999999765443221 3 34578888877 6788
Q ss_pred EEEEeCCCeEEEEEcCCCcEEe---eccCC--CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 444 FISGSIDGKVRIWEVRRCQVVD---YTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~~---~~~~~--~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
|.+.+.|+.|++||+..-.+-. +.++. ..-..-..+||+.+|++|+.|+..++|.+.+.+
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 8877789999999998754331 22221 112234678999999999999999999997643
No 162
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=9e-16 Score=151.51 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=156.1
Q ss_pred CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (519)
Q Consensus 248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~ 327 (519)
..++.++.||.+.|-+-..+- .+.+.+|.+.|.+-.|+|||.-|+|+|+||.|+||.- +|-...++.....
T Consensus 76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence 467788899999988754221 1236789999999999999999999999999999985 4444455556667
Q ss_pred CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe
Q 010037 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (519)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs 406 (519)
.+.|+.|.++..+.+++..- .+.+-+... ...+-.+++|.+-|.++.|++.. .+++|+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g~-----------------h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQGG-----------------HISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecCC-----------------eEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence 78889998887766554211 111111110 12244578999999999999988 999999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (519)
Q Consensus 407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 486 (519)
.|-..+|||-........-.|..+|++|+|+| + ..++.+|.+ ++|+ .....+.|..++|+|||..++
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence 99999999976555544556999999999999 6 677777653 4552 233456789999999999999
Q ss_pred EEecCCeEEEEEC
Q 010037 487 VGTMTGNCRFYDI 499 (519)
Q Consensus 487 sgs~dg~v~iwdl 499 (519)
+|+..|.+.+=.+
T Consensus 273 ~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 273 CGTSTGQLIVAYA 285 (737)
T ss_pred ccccCceEEEeee
Confidence 9999998765444
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.5e-15 Score=149.17 Aligned_cols=274 Identities=14% Similarity=0.176 Sum_probs=176.9
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC--EEEEEeCCCcE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~I 308 (519)
+.+|.+.+.++...|.|.+||+|+.||+|+||.+..+.+... + ...+.|.||+|+|.+. .||.+-.. .+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~-------~-~~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT-------V-QFDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE-------E-eecceeEEEEecCCCCceeEEEEecC-ce
Confidence 678889999999999999999999999999999986654321 1 1345899999999764 45555444 46
Q ss_pred EEEecccCeeec---------eee-ccCCCCceEEEeecCC--------------CCeEEeeccCCceeeeeeeccCCCe
Q 010037 309 RVWKVIEHERLD---------GFD-VQDTDPSCLYFTINHL--------------SQLIPIDVDKEKIDKTKSLRKSSDL 364 (519)
Q Consensus 309 ~iWd~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (519)
.|-+..-|..+. ... ........+.|..... ..+..+.+....-+.......+...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 666654332111 110 0111112223333211 1111111111111111112222222
Q ss_pred eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCC
Q 010037 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442 (519)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~ 442 (519)
.+++...... +....|....+.|.++.|+|.. +|+.++. ..|+|||+.....++.+. ....|..++.+| .|.
T Consensus 547 ~VliHQLSK~----~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKR----KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGD 620 (733)
T ss_pred eEEEEecccc----cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCC
Confidence 3333322211 1112334456779999999998 7777665 579999998877766654 667899999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCCc-EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC-CCeeeeccccceeEEecCC
Q 010037 443 YFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-GMQIFDLSTTAYLFALLGH 519 (519)
Q Consensus 443 ~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~-~~~l~~~~~~~~~~~l~GH 519 (519)
-|+.|+.|+++..+|+.-.. +. .+..|...+++++|++.-.++++|+.||.+.||.-. -..+.+.+-.-++..|.||
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 99999999999999997653 33 577889999999999999999999999999888532 2334444444456666666
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.66 E-value=2.3e-15 Score=146.41 Aligned_cols=208 Identities=18% Similarity=0.253 Sum_probs=156.3
Q ss_pred ccceeecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEecccC----eeeceeeccCCCCceEEEeecCCCCeEEeeccC
Q 010037 276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg--~~LaSgs~Dg~I~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (519)
..+.++-|.+.|.+++|+|.. +.+|+|..-|+|-+||+.+. ..+..+..+..++.++.|.+.....++....++
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 344567799999999999954 58888999999999999532 234455667778899999998888777655443
Q ss_pred CceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEec-
Q 010037 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS- 426 (519)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~- 426 (519)
.+...+..... ...+..+......+.++.|+.+. .++.+..=|...+||++++.. ...+.
T Consensus 258 ---------------tiR~~D~~~~i--~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 258 ---------------TIRLQDFEGNI--SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred ---------------eeeeeeecchh--hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 23222221110 01122222334556777887776 777777777999999998754 33333
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---c--EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~---~--~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
|...|++|+++|+...+||+++.|++++|||++.- . .+....|...|.++.|+|+|-.|++.+.|..|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 88899999999999999999999999999999862 2 35778899999999999988889999999999999984
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=8.5e-15 Score=140.57 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=173.7
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc-------c--cccccccceeecCCCCEEEEEEccCCCE
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg~~ 298 (519)
...+..|...++++.|+|+|..||+|+.+|.|.+|....... . .......+.+.+|...|..++|+|++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 445777888889999999999999999999999998762111 0 0112334567889999999999999999
Q ss_pred EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC-CceeeeeeeccCCCeeEEEeCCcccccc
Q 010037 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (519)
Q Consensus 299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (519)
+++++.|..+++||+..|.....+..+...+..++|.+........ ..+. ..........-...............-.
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~-s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK-SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh-ccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 9999999999999999999999999888888888876654322111 1111 0000000000000000000111111111
Q ss_pred ccc-eeEeec--cCCCeeEEEEcCCC-eEEEEeC----CCc-----EEEEECC-CCeEEEEec-CCCcEEEEEEeeC---
Q 010037 378 EKP-LHEFQG--HSSEVLDLSWSKNG-FLLSSSA----DKT-----VRLWQVG-IDRCLRVFS-HNNYVTSVAFNPV--- 439 (519)
Q Consensus 378 ~~~-~~~~~~--h~~~V~~l~~sp~~-~L~sgs~----Dg~-----V~lWdl~-~~~~~~~~~-h~~~V~~v~fsp~--- 439 (519)
+.. .+.+.. -......++|+|+| +|++... .+. .++++-. ..++...+. ...++..+.|+|.
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 111 111111 12234568899999 7776531 222 2333321 112222222 4445666666653
Q ss_pred --------------CCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 440 --------------DDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 440 --------------d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
..-.+|.++. ..|.|||..+..++. -.-|-..|+.++|++||..|++.+.||.+-+-.+...+
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 2234556665 479999999977663 44577889999999999999999999999888887665
Q ss_pred ee
Q 010037 504 IF 505 (519)
Q Consensus 504 l~ 505 (519)
+-
T Consensus 376 lg 377 (434)
T KOG1009|consen 376 LG 377 (434)
T ss_pred cc
Confidence 54
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=140.89 Aligned_cols=200 Identities=17% Similarity=0.263 Sum_probs=155.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeccc--CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (519)
Q Consensus 284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (519)
.+.|++|.|+|....|++|+.||+++||.+.. +..++.+.....++.+..|.+++...++.. +
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---------------~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---------------G 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec---------------c
Confidence 46899999999999999999999999999854 446677777777888888877665433322 2
Q ss_pred CCeeEEEeCCccccccccceeEeeccC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~ 439 (519)
.....+.|+.....+ .++..+.++. ..+.....+|++ +|+..+..|.|.|....+++.+..++..+.|..++|+.
T Consensus 278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS- 354 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS- 354 (514)
T ss_pred cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence 222233343322221 2233344443 456777889998 99999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc--eEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
++..|++.+.+|.|.+||++...++....-.+. -+++|.+++|.+||+|+..|.|.|||..+
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 899999999999999999999988853333333 46788889999999999999999999754
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.65 E-value=2.6e-14 Score=133.51 Aligned_cols=243 Identities=14% Similarity=0.151 Sum_probs=168.6
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCcccccc-----ccccccceeec-CCCCEEEEEEc-------cCCCEEEEEeCCCc
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLA-HEGSILTMKFS-------LDGQYLASGGEDGT 307 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~-----~~~~~~~~l~~-H~~~I~~l~fs-------pdg~~LaSgs~Dg~ 307 (519)
..|+|||..|++-+.|..+.+|++...-... .......+++- ....|...+|- |+..++|+.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 5899999999999999999999986321110 01111112221 23457777774 56789999999999
Q ss_pred EEEEecccCeeeceeeccCC-----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc-cc---cccc
Q 010037 308 VRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VF---RLLE 378 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~---~~~~ 378 (519)
|++||.-+|+....+..... ...++.|++++...++ +....+.+++.. .. ....
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------------GykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------------GYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------------cccceEEEeeccCCCCCCcchh
Confidence 99999999998766654332 2345566665533222 112223333321 00 0000
Q ss_pred cceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC-CCeEE
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVR 454 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~ 454 (519)
...+.-.+..+-|.|++|+|-. .++.++.-..+-||.-..+.++..+. |.+.|+.++|.+ +|+.|.+|+. |.+|.
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence 1111123457789999999976 89999999999999998998888885 999999999999 8999999885 78999
Q ss_pred EEEcCCCcEE--eeccCCC-c--eEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 455 IWEVRRCQVV--DYTDIRE-I--VSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 455 iwd~~~~~~~--~~~~~~~-~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.||++...-. .+..|.+ . -.-....|+|++|++|+.||.|++||+++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999985433 3333333 2 22345678999999999999999999987
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=1.4e-15 Score=152.65 Aligned_cols=202 Identities=16% Similarity=0.319 Sum_probs=154.6
Q ss_pred eecCCCCeEEe--eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037 242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 242 ~~sp~g~~las--gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
.|.-+...+|+ .+.-|.|-|+++.+..+........ + -....|+.+.|.| |...||.+++||.|++|.+..+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--L-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--c-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 36667777766 5667999999998655432221111 1 1345799999999 888999999999999999976653
Q ss_pred eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
.... ..|-..+.+|...|+.+.|+|
T Consensus 663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP 687 (1012)
T ss_pred Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence 2111 234566889999999999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--c-cCCCc
Q 010037 399 NG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--T-DIREI 472 (519)
Q Consensus 399 ~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~-~~~~~ 472 (519)
-. .|++++.|-+|+|||+.+.+....+ .|.+.|..++|+| +|+.+++.+.||+|++|+.+++..-.. . .....
T Consensus 688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 65 9999999999999999998776666 4999999999999 999999999999999999988653321 1 11233
Q ss_pred eEEEEEeeCCCEEEEEecCC----eEEEEECCCC
Q 010037 473 VSAVCYCPDGKGGIVGTMTG----NCRFYDIKGM 502 (519)
Q Consensus 473 V~~v~~spdg~~l~sgs~dg----~v~iwdl~~~ 502 (519)
--.|.|.-||+++++.+.|. .|.+||..+.
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 35678889999999888765 4788887653
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2e-15 Score=149.48 Aligned_cols=226 Identities=18% Similarity=0.263 Sum_probs=167.4
Q ss_pred hccccccccC---CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--
Q 010037 220 VKRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-- 294 (519)
Q Consensus 220 ~~~~w~~~~~---~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-- 294 (519)
....|++++. .+.+|...|++++|+.+|.+|++|+.|-++.|||.-..+.... .-.+|...|.+++|-|
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------I~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------ISTGHTANIFSVKFVPYT 105 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------eecccccceeEEeeeccC
Confidence 3455666553 5899999999999999999999999999999999874433221 2368999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (519)
Q Consensus 295 dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (519)
+.+.++||+.|..|+++|+...+.-. +. .
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~-~d-------------------------~------------------------- 134 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGG-MD-------------------------H------------------------- 134 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccc-cc-------------------------c-------------------------
Confidence 56789999999999999996533100 00 0
Q ss_pred cccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE-------EEEe----cCCCcEEEEEEeeCCC
Q 010037 375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF----SHNNYVTSVAFNPVDD 441 (519)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~-------~~~~----~h~~~V~~v~fsp~d~ 441 (519)
-...+.+.+..|...|..|+-.|++ .+.+++.||+|+-+|++.... ...+ ..--...|+.++|.+.
T Consensus 135 -~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp 213 (758)
T KOG1310|consen 135 -GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP 213 (758)
T ss_pred -CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence 0012344567799999999999998 899999999999999986321 1111 1223568999999899
Q ss_pred CEEEEEeCCCeEEEEEcCCCc------------------EEeec--cCC-----------CceEEEEEeeCCCEEEEEec
Q 010037 442 NYFISGSIDGKVRIWEVRRCQ------------------VVDYT--DIR-----------EIVSAVCYCPDGKGGIVGTM 490 (519)
Q Consensus 442 ~~l~sgs~Dg~V~iwd~~~~~------------------~~~~~--~~~-----------~~V~~v~~spdg~~l~sgs~ 490 (519)
.+|++|+.|-..++||.+... ++.+. +|- ..++-++|+|+|.-|++.-.
T Consensus 214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~ 293 (758)
T KOG1310|consen 214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG 293 (758)
T ss_pred ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC
Confidence 999999999999999954211 12111 110 11567899999998888776
Q ss_pred CCeEEEEECCCCe
Q 010037 491 TGNCRFYDIKGMQ 503 (519)
Q Consensus 491 dg~v~iwdl~~~~ 503 (519)
.-.|+++|+..++
T Consensus 294 gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 294 GEHVYLFDVNEDK 306 (758)
T ss_pred CeEEEEEeecCCC
Confidence 7789999998665
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=5.9e-15 Score=135.83 Aligned_cols=209 Identities=18% Similarity=0.266 Sum_probs=151.3
Q ss_pred eecccceeecCCCCeE-EeeecC-------CeEEEeeCCccccc--cccccccceee-cCCCCEEEEEEccCCCEEEEEe
Q 010037 235 IDRHGSATLKPGDHEL-TLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG 303 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~l-asgs~d-------g~I~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs 303 (519)
.+.+..++-+|-...+ ++...+ ..+.||.+.+.... ..++.+...+. .|-+.|.|+.|.|++..||+-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 3445556777765544 333321 34789998754432 12222222333 4567999999999999998876
Q ss_pred CCCcEEEEecccCeee-ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037 304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (519)
Q Consensus 304 ~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (519)
|..|.+|++..+..+ ..+.. .
T Consensus 143 -dn~i~l~~l~ess~~vaev~s---------------------------------------------------------s 164 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLS---------------------------------------------------------S 164 (370)
T ss_pred -cCceEEEEcccCcchheeecc---------------------------------------------------------c
Confidence 789999999876542 11110 0
Q ss_pred EeeccCCCeeEEEEcCC--CeEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~--~~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
.-.+|....++-+|+|. +.-+....|+++..||+++..+...+. |...|..+.|+|....+|++|+.||.|+|||.
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 01124555677789993 455555678999999999988887775 99999999999966778999999999999999
Q ss_pred CCCc-EE-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037 459 RRCQ-VV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 459 ~~~~-~~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~ 501 (519)
+..+ ++ .+.+|...|.++.|+|. .++|++|+.|..|.+|....
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 9754 33 68899999999999995 46788999999999998753
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=6.1e-16 Score=159.63 Aligned_cols=248 Identities=15% Similarity=0.271 Sum_probs=186.7
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I 308 (519)
+.+.+|.+.|.|+.|...|.++++|+.|..|+||...... +.....||.+.|+.++.+.+..++|+++.|..|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 3467788999999999999999999999999999976433 334578999999999999999999999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc--cc------
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--KP------ 380 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~------ 380 (519)
++|.+..+..+..+..+...++.+.|.+.. ..+.+++|.+|+.+...+.. .|
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCcccc
Confidence 999999999999999999999999887765 22344455555444100000 00
Q ss_pred --e----------------eEeeccCCCeeEEEEcCCC-eE-----------EEEeCCCcEEEEECCCCeEEEEec-CCC
Q 010037 381 --L----------------HEFQGHSSEVLDLSWSKNG-FL-----------LSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (519)
Q Consensus 381 --~----------------~~~~~h~~~V~~l~~sp~~-~L-----------~sgs~Dg~V~lWdl~~~~~~~~~~-h~~ 429 (519)
+ .......-...+++|..+. .+ +++-.+..+.+|++.++..++.+. |..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0 0001111123334444443 33 333455668889999998887775 999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
++..+.++|.+.....+++.||+..|||+-.+..++ ..+ ...+...+|++||+.++....-|.++|...-.++.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 999999999888889999999999999999887663 334 55566779999999999988889999987754443
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=2.7e-15 Score=150.59 Aligned_cols=199 Identities=14% Similarity=0.250 Sum_probs=148.7
Q ss_pred cceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccC
Q 010037 239 GSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 239 ~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
..+.|.| |...||+++.||.|++|.+...............+.+|...|+.+.|+| -.+.|++++.|-+|++||+.++
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA 710 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence 3467888 5678999999999999999876655555566678999999999999999 4568999999999999999876
Q ss_pred eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (519)
+. ...+.+|.+.|.+++|
T Consensus 711 ~~--------------------------------------------------------------~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 711 KL--------------------------------------------------------------YSRLVGHTDQIFGIAW 728 (1012)
T ss_pred hh--------------------------------------------------------------hheeccCcCceeEEEE
Confidence 53 3456889999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEECCCCe-EEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC----eEEEEEcCCCc--EEe-
Q 010037 397 SKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQ--VVD- 465 (519)
Q Consensus 397 sp~~-~L~sgs~Dg~V~lWdl~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~iwd~~~~~--~~~- 465 (519)
+|+| .+++.+.||+|++|+-+++. ++..-. ....--.|.|.- +++++++.+.|. +|.+||..+-. .+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t 807 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT 807 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence 9999 99999999999999988764 333222 223335577877 899988877764 68888876532 221
Q ss_pred -eccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECC
Q 010037 466 -YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 466 -~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~ 500 (519)
..+..-.+.--.|.+|.. ++++|-.|..|.+|.+-
T Consensus 808 ~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 808 QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred eeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 111112222234555654 46677789999999884
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1e-14 Score=140.95 Aligned_cols=201 Identities=21% Similarity=0.250 Sum_probs=140.4
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
..++|+++|..+++|+.||.+|||++...... .....|.+.|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 35799999999999999999999998744332 3456799999999999999999999999 999999999965
Q ss_pred eceeeccC--CCCceEEEeecCCCCe-EEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cceeEeeccCCCeeEE
Q 010037 319 LDGFDVQD--TDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDL 394 (519)
Q Consensus 319 ~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l 394 (519)
+....... .....+.|........ ..+... .....+..++...|.... -+....-.-...|.++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEec------------CCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 54443111 1122233333321111 111110 011111112221111110 0011111224579999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
+.+++| +++.|++||.|.|++..+-++++.++ |...|+.|.|+| +.+++++.+.|....|.-+.-
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999 99999999999999999999888886 999999999999 999999999998888887654
No 174
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=1.6e-14 Score=134.83 Aligned_cols=203 Identities=14% Similarity=0.203 Sum_probs=164.5
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
..+.|.+|++++..+|++.....|.||...... .....+++..|...|++|.|+|..+.|++|+.|..-++|....
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 456667999999999999999999999887544 1334567889999999999999999999999999999998743
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
+.. -++...+..|+..++++.
T Consensus 87 ~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V~ 107 (361)
T KOG1523|consen 87 GGT-----------------------------------------------------------WKPTLVLLRINRAATCVK 107 (361)
T ss_pred CCe-----------------------------------------------------------eccceeEEEeccceeeEe
Confidence 321 123344566889999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEE---E--EecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC---------
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDRCL---R--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR--------- 460 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~---~--~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~--------- 460 (519)
|+|.. .+++|+.-+.|.||-++...-- + ...+.+.|+++.|+| ++-+|++|+.|++.||+...-
T Consensus 108 WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap 186 (361)
T KOG1523|consen 108 WSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAP 186 (361)
T ss_pred ecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCC
Confidence 99998 9999999999999987654422 1 113778899999999 899999999999999996421
Q ss_pred ---------CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 461 ---------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 461 ---------~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
++++ .+....+.|..+.|+|+|..|+-.+.|+.+.+=|....
T Consensus 187 ~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 187 TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1122 23356788999999999999999999999999998765
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.9e-15 Score=160.29 Aligned_cols=211 Identities=20% Similarity=0.323 Sum_probs=165.2
Q ss_pred eeEeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037 232 ARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR 309 (519)
Q Consensus 232 ~~~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~ 309 (519)
..|...|..+.|++.+. +||+|..+|.|.|||+.+....+... -..-.+.|.+|+|+. ..+.||+++.+|.+.
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 34556677789999877 99999999999999999755443321 123457899999987 456899999999999
Q ss_pred EEecccCeeeceeeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 310 VWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|||++..+.+-.+..... ....+.|.+++...++...-+. ..-.+..|+.+. ...+++++.+|
T Consensus 188 iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd------------~~PviqlWDlR~---assP~k~~~~H 252 (1049)
T KOG0307|consen 188 IWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD------------SAPVIQLWDLRF---ASSPLKILEGH 252 (1049)
T ss_pred eccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC------------CCceeEeecccc---cCCchhhhccc
Confidence 999998876665544433 3456777777766665443222 223445555443 24678888999
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
...|.+|.|++.+ +|++++.|+.|.+|+.++++.+..+. ....+..+.|+|.+...|++.+.||+|.||.+....
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999987 99999999999999999999999997 678999999999888899999999999999987654
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=1.4e-14 Score=133.56 Aligned_cols=203 Identities=16% Similarity=0.255 Sum_probs=154.0
Q ss_pred ccceeecCCCC-----eEEeeecCCeEEEeeCCc--cccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037 238 HGSATLKPGDH-----ELTLGQRMRRVRVHPVKK--QSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR 309 (519)
Q Consensus 238 ~~~~~~sp~g~-----~lasgs~dg~I~vw~~~~--~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~ 309 (519)
+..+.|.|+.. +||+. +..+++|.+.. .............-..|..++++..|+. +.++|.+++-|-+..
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT 176 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT 176 (364)
T ss_pred ccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence 34456666553 45553 45699999873 3322222222222345678999999998 778999999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
|||++++.. +.....+-+|..
T Consensus 177 iWdie~~~~-----------------------------------------------------------~~vkTQLIAHDK 197 (364)
T KOG0290|consen 177 IWDIETGVS-----------------------------------------------------------GTVKTQLIAHDK 197 (364)
T ss_pred EEEEeeccc-----------------------------------------------------------cceeeEEEecCc
Confidence 999987621 001234567999
Q ss_pred CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe---c-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCc
Q 010037 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF---S-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQ 462 (519)
Q Consensus 390 ~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~---~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~ 462 (519)
.|.+++|...+ .+++.+.||.||++|++....-..+ . ...+...++|++.+.+|+|+-..| ..|.|.|++...
T Consensus 198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC 277 (364)
T ss_pred ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence 99999999976 9999999999999999976544333 2 366889999999999999987665 479999999754
Q ss_pred --EEeeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037 463 --VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 463 --~~~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~ 501 (519)
+..+..|...|++++|.|. ...|++++.|..+.|||+..
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 3478999999999999995 46799999999999999964
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=2.9e-14 Score=133.49 Aligned_cols=157 Identities=25% Similarity=0.455 Sum_probs=122.4
Q ss_pred ccceeecC----CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC----CCEEEEEeCCCcEE
Q 010037 238 HGSATLKP----GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGGEDGTVR 309 (519)
Q Consensus 238 ~~~~~~sp----~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~LaSgs~Dg~I~ 309 (519)
+..++|++ +...+++.....++.+|....... ...++... -..|......++|+-+ ..+||.||.-|.|+
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-ir~lq~y~-D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-IRLLQSYA-DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-eeeeeecc-CCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 33455553 334444444557788888764331 11111110 1247788889999764 34899999999999
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
|.|+.++++ ...+.+|..
T Consensus 119 Vid~~~~~~--------------------------------------------------------------~~~~~ghG~ 136 (385)
T KOG1034|consen 119 VIDVVSGQC--------------------------------------------------------------SKNYRGHGG 136 (385)
T ss_pred EEecchhhh--------------------------------------------------------------ccceeccCc
Confidence 999977764 334678999
Q ss_pred CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 390 ~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
.|+.|.++|.. +++++|.|..||+|++++..|+..|. |.+.|.++.|++ ++.+|++++.|.+|++|++.
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecC
Confidence 99999999988 99999999999999999999999996 999999999999 99999999999999999987
No 178
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.4e-13 Score=138.23 Aligned_cols=202 Identities=18% Similarity=0.271 Sum_probs=155.6
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee-ceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-DGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (519)
Q Consensus 283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (519)
-..+|.+|+|+.+.+.||.+-.||.|-||++..+-.. ..+..+.. .+..++|. ... ..+..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~---------------RLFS~ 86 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGG---------------RLFSS 86 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCC---------------eEEee
Confidence 3578999999999999999999999999999875433 23333322 34445554 112 22344
Q ss_pred CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--c-CCCcEEEEEE
Q 010037 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAF 436 (519)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~-h~~~V~~v~f 436 (519)
+.++.+..|+... .+++..+....+.|++++.+|.+ .++.|+.||.+..++...+...... . ..+.|.++.|
T Consensus 87 g~sg~i~EwDl~~----lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 87 GLSGSITEWDLHT----LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred cCCceEEEEeccc----CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 5566777787765 35577778888999999999999 9999999998888888877665433 2 6789999999
Q ss_pred eeCCCCEEEEEeCCCeEEEEEcCCCcEEe-----ecc----CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~----~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
+| ++..+++|+.||.|++||+.+++.+. +.. ....|+++.|-.++ .|++|...|+|.+||...+.+++-
T Consensus 163 ~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 163 NP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred cC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhh
Confidence 99 89999999999999999999987664 222 23347888888776 489999999999999998887653
No 179
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.60 E-value=2.7e-14 Score=139.95 Aligned_cols=184 Identities=16% Similarity=0.298 Sum_probs=153.0
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCC-EEEEEeCCCc
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQ-YLASGGEDGT 307 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~-~LaSgs~Dg~ 307 (519)
.++.|.+.|.++.++..+.+||+++..|.|.|..+....+. .+|... ...|.-+.|+|..+ +|.+++++|.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-------cceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 46677888889999999999999999999999998754432 123322 34567999999765 5678899999
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.+||+.....+ .+-...|
T Consensus 189 VtlwDv~g~sp~-------------------------------------------------------------~~~~~~H 207 (673)
T KOG4378|consen 189 VTLWDVQGMSPI-------------------------------------------------------------FHASEAH 207 (673)
T ss_pred EEEEeccCCCcc-------------------------------------------------------------cchhhhc
Confidence 999998654421 2224569
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EE
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV 464 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~ 464 (519)
..+...|+|+|.+ +|++.+.|+.|.+||++.......+....+...|+|.+ +|.+|++|+..|.|..||++..+ ++
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCc
Confidence 9999999999988 89999999999999999998888888888999999999 99999999999999999999754 34
Q ss_pred -eeccCCCceEEEEEeeCC
Q 010037 465 -DYTDIREIVSAVCYCPDG 482 (519)
Q Consensus 465 -~~~~~~~~V~~v~~spdg 482 (519)
....|...|++++|.|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 577888899999998875
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.4e-14 Score=144.43 Aligned_cols=219 Identities=18% Similarity=0.270 Sum_probs=151.6
Q ss_pred ccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccc---ccccceeecCCCCEEEEEEccCCCEEEE
Q 010037 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (519)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~LaS 301 (519)
..++-++..|..+|-|+++.+++.++.+|+.||+|+.|++......... ......+.||++.||.+++|+....|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3455567788999999999999999999999999999988732221111 1233468899999999999999999999
Q ss_pred EeCCCcEEEEecccCeeeceeeccCCC--CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 302 GGEDGTVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
++.||+|++|+...... ..+...... +..+.+........+ .+.....++...+... .
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~------------------~s~~~~~~~~~~~ev~-s 473 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSL------------------ASFRFGYTSIDDMEVV-S 473 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhh------------------hhcccccccchhhhhh-h
Confidence 99999999999866654 222222221 222222211100000 0000001111110000 0
Q ss_pred ceeEee-------ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037 380 PLHEFQ-------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 380 ~~~~~~-------~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
.+..+. .-...+.-+.++|.+ +.+++..|+.|+++|..++.++.... |...++++++.| ++.+|++|+.|
T Consensus 474 ~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d 552 (577)
T KOG0642|consen 474 DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHD 552 (577)
T ss_pred heeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCC
Confidence 001110 112456778888988 99999999999999999999987764 999999999999 99999999999
Q ss_pred CeEEEEEcCCCcEE
Q 010037 451 GKVRIWEVRRCQVV 464 (519)
Q Consensus 451 g~V~iwd~~~~~~~ 464 (519)
+.|++|.+....++
T Consensus 553 ~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 553 GSVRLWKLDVKTCV 566 (577)
T ss_pred ceeehhhccchhee
Confidence 99999999877766
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=133.98 Aligned_cols=223 Identities=20% Similarity=0.309 Sum_probs=151.1
Q ss_pred ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC---CEEEEEEccCCCEEEEEeCCCcEEEEec-ccCee
Q 010037 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER 318 (519)
Q Consensus 243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~LaSgs~Dg~I~iWd~-~~~~~ 318 (519)
..|+..++|+.+.+.-|++||.-.++...+ +. ...|.. .-.+++|+|||.+|++| ....|+++|+ +.|..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 457888999999999999999987664332 11 112333 34589999999999865 6789999999 44432
Q ss_pred eceee-------ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 319 LDGFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 319 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
...+. .....+.|+.+.+.....+...... . ...+..++ ...|+..+.+|.+.|
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q------------~~giy~~~------~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-Q------------RVGIYNDD------GRRPLQLLGGHGGGV 253 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeeccc-c------------eeeeEecC------CCCceeeecccCCCe
Confidence 22221 1122334444544443322221111 0 00111111 136788889999999
Q ss_pred eEEEEcCCC-eEEEEe-CCCcEEEEECCCC-eEEEEec-CCC-cEEEEEE--eeCCCCEEEEEeCCCeEEEEEcCC-Cc-
Q 010037 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTSVAF--NPVDDNYFISGSIDGKVRIWEVRR-CQ- 462 (519)
Q Consensus 392 ~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~-~~~~~~~-h~~-~V~~v~f--sp~d~~~l~sgs~Dg~V~iwd~~~-~~- 462 (519)
+.+.|.++| .|++|+ .|..|..||++.. .++..+. |.. .-..|.| .| .+++|++|+.||.|++||+.+ +.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence 999999999 888887 4788999999864 3444443 433 3344555 57 899999999999999999998 55
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
+..+..+...++.++++|--.++++++..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc
Confidence 44677788899999999998888887754
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=1.5e-12 Score=132.61 Aligned_cols=249 Identities=25% Similarity=0.449 Sum_probs=185.9
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEE-ccCCC-EEEEEeC-C
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D 305 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~LaSgs~-D 305 (519)
....+...+.++.+.+.+..++.++.++.+.+|+....... ...+.++. ..+..+.+ ++++. +++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL------IKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee------EEEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 34455667777899999999999999999999999865411 12344433 37777777 88887 5555455 9
Q ss_pred CcEEEEeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC-CCeeEEEeCCccccccccceeE
Q 010037 306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHE 383 (519)
Q Consensus 306 g~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~ 383 (519)
+.+++|++.. ......+..+...+..+.+.+... . .+... .+..+.+|+... ...+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~----~~~~~~ 193 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--L--------------LASGSSLDGTIKLWDLRT----GKPLST 193 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC--E--------------EEecCCCCCceEEEEcCC----CceEEe
Confidence 9999999988 666666776666666666655543 1 11112 355666665554 455677
Q ss_pred eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEE-Eec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
+.+|...|.+++|+|++ .+++++.|+.|++||...+..+. .+. |...+ -..|+| ++.++++++.|+.+++|+++
T Consensus 194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeec
Confidence 78899999999999988 44444999999999999888877 454 66665 338999 77899999999999999998
Q ss_pred CCcE-E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 460 RCQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 460 ~~~~-~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
.... + ....|...|.++.|.|++..+++++.|+.+++|++.+.....
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 7664 3 335678899999999999999889999889999998766443
No 183
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=6e-14 Score=139.00 Aligned_cols=226 Identities=18% Similarity=0.278 Sum_probs=157.8
Q ss_pred ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeece
Q 010037 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDG 321 (519)
Q Consensus 243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~ 321 (519)
-.|.+-.|+.|-..|.|.+.+... .+.+.++.. ...-.+..|+|++|-|.+ ..++.+-.+|.+.+||..-..
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne-~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---- 253 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNE-ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---- 253 (636)
T ss_pred cCCCCcceEEeeccCceEEecchh--hHHHHhhhh-cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence 356777888898999999988765 223332222 111234789999999944 456667789999999872110
Q ss_pred eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-
Q 010037 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (519)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~- 400 (519)
....+ .+..-.....+.+ ..+..+ ....|+..+.--.+.|..++|+|+|
T Consensus 254 ---~~t~p---~~~~~k~~~~f~i---------------------~t~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~ 303 (636)
T KOG2394|consen 254 ---GATAP---SYQALKDGDQFAI---------------------LTSKSK---KTRNPVARWHIGEGSINEFAFSPDGK 303 (636)
T ss_pred ---cCCCC---cccccCCCCeeEE---------------------eeeecc---ccCCccceeEeccccccceeEcCCCc
Confidence 00000 0000000000000 000000 0113444555556789999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~ 478 (519)
+|++.+.||.+||+|..+.+++..++ --+...|++|+| |++||++|+.|.-|.||.+..++++ .-.+|+.+|+.|+|
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 99999999999999999988877775 567799999999 9999999999999999999999999 46889999999999
Q ss_pred ee-------------------------------C----C-------------CEEEEEecCCeEEEEECCCCeeee
Q 010037 479 CP-------------------------------D----G-------------KGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 479 sp-------------------------------d----g-------------~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
.| + + ..+.+.+.|-.+.+||+..-.|..
T Consensus 383 Dpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 383 DPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 83 0 1 246677889999999998766655
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=2.2e-13 Score=125.59 Aligned_cols=118 Identities=19% Similarity=0.453 Sum_probs=95.2
Q ss_pred CCCeeEEEEcCCC-eEE--EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 010037 388 SSEVLDLSWSKNG-FLL--SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRC 461 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~--sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~ 461 (519)
.++|.+++|+|+| .|+ .|..++.|.+||++ .+.+..+. ...++.|.|+| +|++|++++. .|.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999999 543 45577899999997 56666664 56788999999 9999999875 467999999998
Q ss_pred cEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeeeeccc
Q 010037 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIFDLST 509 (519)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~~~~~ 509 (519)
+.+....|.. ++.++|+|||++|++++. |+.++||+..+..+.....
T Consensus 136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 8887666654 789999999999999875 7889999998766655443
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=1.5e-12 Score=140.16 Aligned_cols=262 Identities=11% Similarity=0.085 Sum_probs=165.7
Q ss_pred eccccee-ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 236 DRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 236 ~~~~~~~-~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
..+..++ .++++.++++|+.||+|+||+..+............++.--...+.++...+.++.+|.++.||.|++.++.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 3344445 455569999999999999999987665543333444455457789999999999999999999999999986
Q ss_pred cCeeeceeeccCCCCceEEEe-ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037 315 EHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (519)
.....+.. ..+.... ....+.+..+............+.......++.|+.+...-... .......+.|++
T Consensus 1129 ~~~~~~~~------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1129 HYNVSKRV------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTS 1200 (1431)
T ss_pred ccccccce------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--hhcCccccceeE
Confidence 53111000 0000000 00001111111100000111223334445566676654322111 112234578999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCC--CEEEEEe--CCCeEEEEEcCCCcEEe-
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGS--IDGKVRIWEVRRCQVVD- 465 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~--~~l~sgs--~Dg~V~iwd~~~~~~~~- 465 (519)
++.+|.+ ++++|+..|.+.+||++-+.++.... +..+++.+..+|..+ ...++++ ..+.|.+|++.++....
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 9999999 99999999999999999999888876 556788888888544 4555544 47789999999875432
Q ss_pred -ecc------------------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 466 -YTD------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 466 -~~~------------------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
+.. +.-.....++..-+..+++|+.|+.|+.||.......
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 221 1111222334444567889999999999999765544
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=9.1e-12 Score=126.74 Aligned_cols=233 Identities=30% Similarity=0.464 Sum_probs=172.2
Q ss_pred cCCCC-eEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCeeec
Q 010037 244 KPGDH-ELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD 320 (519)
Q Consensus 244 sp~g~-~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~~~ 320 (519)
++++. .++.. ..++.+.+|+... .......+..|...|..++|+|++.++++++. |+.+++|++..+....
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 67777 45543 4499999999875 12223457889999999999999999999886 9999999999877777
Q ss_pred eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee-EeeccCCCeeEEEEcCC
Q 010037 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~ 399 (519)
.+..+...+.++.+.+... .. ......++.+.+|+.. ....+. .+.+|...+ ...|+|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~--~~-------------~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGG--LL-------------IASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred eeccCCCceEEEEEcCCcc--eE-------------EEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence 7776666677776663332 11 1113444555555333 223344 577888875 4489999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeE-EEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec---cCCCce
Q 010037 400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIV 473 (519)
Q Consensus 400 ~-~L~sgs~Dg~V~lWdl~~~~~-~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V 473 (519)
+ .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+++||..+....... .|...+
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 8 888999999999999987664 4444 5889999999999 8888888999999999999888766432 566679
Q ss_pred EEEEEeeCCCEEEEE-ecCCeEEEEECCCCe
Q 010037 474 SAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQ 503 (519)
Q Consensus 474 ~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~ 503 (519)
..+.|.+++..++.+ ..|+.+++|++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999994343566666 678899999998776
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=5.2e-13 Score=127.54 Aligned_cols=265 Identities=15% Similarity=0.194 Sum_probs=166.3
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV 308 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~Dg~I 308 (519)
.+..|...++++.|+.++++||+|+.|..++||++...-..... ...+.. ..|...|.|++|....++|.+|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-CCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 35567788889999999999999999999999998743221111 111122 3466899999999999999999999999
Q ss_pred EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee--------------------------------ee
Q 010037 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK--------------------------------TK 356 (519)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~ 356 (519)
...|+.+.+.+..+...........+.......+++.....+.+.. ..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999887766544332111111111111111111111111000 00
Q ss_pred eeccCCCeeEEEeCCccccccccceeE------eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEecCC
Q 010037 357 SLRKSSDLTCVVLPPKVFRLLEKPLHE------FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFSHN 428 (519)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~h~ 428 (519)
.+..+..+..-+|+.+.. ..++.. +......-..+.|+|+| .|++--....-.+||+-+.+| +..+.|+
T Consensus 210 i~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred EEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 011111111112221110 111111 11112233677899999 777777777778889887544 3344443
Q ss_pred C-------cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC------------------------cEEeeccCCCceEEEE
Q 010037 429 N-------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------------------QVVDYTDIREIVSAVC 477 (519)
Q Consensus 429 ~-------~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~------------------------~~~~~~~~~~~V~~v~ 477 (519)
. .+.+++|.- ...+++|+.+-.|+||.+... ....+.+|...++.+.
T Consensus 287 ~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2 356677764 556999999999999987531 1224678999999999
Q ss_pred EeeCCCEEEEEecCCeEEEEECC
Q 010037 478 YCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 478 ~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
|+|...+|++.+..+.++||.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999764
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=141.30 Aligned_cols=166 Identities=26% Similarity=0.442 Sum_probs=131.4
Q ss_pred ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCcee
Q 010037 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (519)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (519)
+...+++.||++.|+|+.|+.+|.+|++|+.|-.+.|||....+.+..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------------------------------- 87 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------------------------------- 87 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--------------------------------
Confidence 344567899999999999999999999999999999999865443221
Q ss_pred eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCC----------e
Q 010037 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID----------R 420 (519)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~----------~ 420 (519)
.-.||...|.++.|-|.. .+++|..|+.|+|+|+... .
T Consensus 88 -----------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 88 -----------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred -----------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 125799999999999953 8999999999999999842 2
Q ss_pred EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----------eeccCCCceEEEEEeeCC-CEEEE
Q 010037 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDG-KGGIV 487 (519)
Q Consensus 421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----------~~~~~~~~V~~v~~spdg-~~l~s 487 (519)
....+. |...|..|+-.|...+.|.+++.||+|+-+|++....- .+...--...++..+|.. .+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 233333 88999999999955699999999999999999874311 122222345788899854 67899
Q ss_pred EecCCeEEEEECC
Q 010037 488 GTMTGNCRFYDIK 500 (519)
Q Consensus 488 gs~dg~v~iwdl~ 500 (519)
|+.|-..++||.+
T Consensus 219 GgsdpfarLYD~R 231 (758)
T KOG1310|consen 219 GGSDPFARLYDRR 231 (758)
T ss_pred cCCCchhhhhhhh
Confidence 9999999999953
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.8e-13 Score=141.73 Aligned_cols=242 Identities=14% Similarity=0.212 Sum_probs=166.1
Q ss_pred CCCeEEeeecCCeEEEeeCCccc---ccc-ccccccce-eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQS---REL-SSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~---~~~-~~~~~~~~-l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
|..++++|+.||.|+||+-.... .++ +.....+. +.+-.+.=.-+.|.....+|+++|.-..|+|||........
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 44578899999999999754322 111 11111111 11112222457888877777777778999999998887766
Q ss_pred eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC--eeEEEEcC
Q 010037 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK 398 (519)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp 398 (519)
.+..... +++. ++..+ .......+.+..++.+.+++.+.-.. ...+...+.|+.. |..+.+.+
T Consensus 1202 diP~~s~--t~vT----------aLS~~--~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSS--TLVT----------ALSAD--LVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred ecccCCC--ccce----------eeccc--ccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence 5544321 1111 11110 11122334566777788887765433 2567778889887 99999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEe---cC---CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee----
Q 010037 399 NG--FLLSSSADKTVRLWQVGIDRCLRVF---SH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---- 466 (519)
Q Consensus 399 ~~--~L~sgs~Dg~V~lWdl~~~~~~~~~---~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~---- 466 (519)
+| .|++|+.||.|++||++.......+ .| .+.++++..|+ +...+|+|+. +.|+||++...++..+
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence 88 7999999999999999985322222 22 34699999999 8999999998 9999999987654422
Q ss_pred ---ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 467 ---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 467 ---~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
....+.+.+++|+|---+||+|..|..|.||......+
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 22345679999999999999999999999998876543
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=3.3e-13 Score=126.20 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=133.8
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCC
Q 010037 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (519)
Q Consensus 283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (519)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 357899999999999999999999999998755431
Q ss_pred CeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeEEE---EecCCCcEEEEEEe
Q 010037 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLR---VFSHNNYVTSVAFN 437 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl-~~~~~~~---~~~h~~~V~~v~fs 437 (519)
.++.+++..|...|++++|+|.. .|++|+.|..-+||.. ..++... .+.++..+++|.|+
T Consensus 45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 13467888999999999999998 9999999999999998 4444333 34599999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
| .++.|++|+.-..|.||-+....-- ....++..|+++.|+|++-+|++|+.|+.+|||..
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 9 9999999999999999988764422 23456788999999999999999999999999986
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.7e-11 Score=115.58 Aligned_cols=239 Identities=15% Similarity=0.200 Sum_probs=163.6
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
+-|+.+---++.......+++.+.++......- -...+|.+|.++. +.|+.+=++ .|.|||+.+.+.+.
T Consensus 52 mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--------~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 52 MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI--------FFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred eecccceeEEEecCCCceEEEEEcccCceEEEE--------ecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence 345444322333333356888888754432211 1346799999964 456666555 49999999999999
Q ss_pred eeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 321 GFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
++..... ....++++++..+...+... ....+.+++|+... -+++..+..|.+.+.+++|+++
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~------------s~t~GdV~l~d~~n----l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPG------------STTSGDVVLFDTIN----LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecC------------CCCCceEEEEEccc----ceeeeEEEecCCceeEEEECCC
Confidence 8877633 33456666666544443331 12255666666544 3567788999999999999999
Q ss_pred C-eEEEEeCCCc-EEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE----------
Q 010037 400 G-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---------- 464 (519)
Q Consensus 400 ~-~L~sgs~Dg~-V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---------- 464 (519)
| +|||+|..|+ |||+.+.+++.+..|. ....|.+++|+| ++.+|++.+..++|+||.+.+...-
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~ 263 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTS 263 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCc
Confidence 9 9999999998 6899999999999996 445689999999 9999999999999999987642100
Q ss_pred ------------------ee----------ccCCCce-EEEEEe--eCCCEEEEEecCCeEEEEECC---CCeeeec
Q 010037 465 ------------------DY----------TDIREIV-SAVCYC--PDGKGGIVGTMTGNCRFYDIK---GMQIFDL 507 (519)
Q Consensus 465 ------------------~~----------~~~~~~V-~~v~~s--pdg~~l~sgs~dg~v~iwdl~---~~~l~~~ 507 (519)
.. ....... ..+.+. +....+.+++.||.++.|.+. +|.+.-+
T Consensus 264 ~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~li 340 (391)
T KOG2110|consen 264 WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALI 340 (391)
T ss_pred ccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEE
Confidence 00 0000111 223344 467889999999999999875 3444433
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=128.00 Aligned_cols=204 Identities=16% Similarity=0.218 Sum_probs=146.6
Q ss_pred eeEeecccceeecC--CCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEe----C
Q 010037 232 ARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGG----E 304 (519)
Q Consensus 232 ~~~~~~~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs----~ 304 (519)
+++...++.+.|.. ....+.+++.||+|++||++....... ..+.+|. .+-.|++.+-.++.+++|. .
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s 141 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-----ISWTQQSGTPFICLDLNCKKNIIACGTELTRS 141 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----eeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence 33444444555555 456788999999999999986554322 2234555 5667888777788888875 3
Q ss_pred CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (519)
Q Consensus 305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
|-.|.+||++..+... -.-.
T Consensus 142 ~A~v~lwDvR~~qq~l------------------------------------------------------------~~~~ 161 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLL------------------------------------------------------------RQLN 161 (376)
T ss_pred ceEEEEEEeccccchh------------------------------------------------------------hhhh
Confidence 6789999997765310 1113
Q ss_pred eccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
..|...|+++.|+|+. +|++||.||-|.|||++.. ..+.++.|...|.++.|....-..+.+-+...+..+|++
T Consensus 162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 5699999999999988 9999999999999999764 345666788889999998733346777788888999987
Q ss_pred CCCcEE--------------------------------------------------------------ee-ccCCCceEE
Q 010037 459 RRCQVV--------------------------------------------------------------DY-TDIREIVSA 475 (519)
Q Consensus 459 ~~~~~~--------------------------------------------------------------~~-~~~~~~V~~ 475 (519)
+.+... .+ .+|...|.+
T Consensus 242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 653200 00 113334666
Q ss_pred EEEeeCCCEEEEEecCCeEEEEECC
Q 010037 476 VCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 476 v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+.|...+.++.+|+.||.+.+|...
T Consensus 322 i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 322 ILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HhhhcccceeeccCCCceEEEEecC
Confidence 7777778899999999999999854
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.51 E-value=6.2e-13 Score=122.76 Aligned_cols=193 Identities=13% Similarity=0.214 Sum_probs=132.4
Q ss_pred eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee
Q 010037 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
..|+. +-+++.+.+-|.+..||++..+. ..+....+.+|.+.|..++|...+ +.+|+.|.||.||++|++..+.
T Consensus 156 FDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccCCcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 33443 44688899999999999998652 122233578999999999999855 5899999999999999987654
Q ss_pred eceeeccCC---CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 319 LDGFDVQDT---DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 319 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
...+..... +..-+.+.....+.++.+.. ....+++.+.+. ...++..+++|.+.|+.|+
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~--------------dS~~V~iLDiR~---P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--------------DSNKVVILDIRV---PCTPVARLRNHQASVNGIA 294 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhc--------------CCceEEEEEecC---CCcceehhhcCcccccceE
Confidence 332222111 11112222222222222222 122333443332 3467889999999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEECCCCe------EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037 396 WSKNG--FLLSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (519)
Q Consensus 396 ~sp~~--~L~sgs~Dg~V~lWdl~~~~------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i 455 (519)
|.|.. .|+|++.|..+.+||+...- ++..+...+.|+.|+|+|..+..++.+.. +++.|
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99987 99999999999999997532 33344577899999999988889888764 44444
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.2e-12 Score=136.23 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=129.9
Q ss_pred eeEeecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 010037 232 ARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGT 307 (519)
Q Consensus 232 ~~~~~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~ 307 (519)
..+...+...+|+|+|+.|+..+.+ ..|++|++..+..... ..+.+| ...++|+|||++|+.+. .+|.
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-----~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-----ASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-----ecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 3344556678999999999987654 4799999875432111 112333 34689999999888764 6887
Q ss_pred EEEEec--ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 308 VRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 308 I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
+.||.+ .++. ...+.
T Consensus 272 ~~Iy~~d~~~~~---------------------------------------------------------------~~~lt 288 (429)
T PRK01742 272 LNIYVMGANGGT---------------------------------------------------------------PSQLT 288 (429)
T ss_pred EEEEEEECCCCC---------------------------------------------------------------eEeec
Confidence 777654 2221 11223
Q ss_pred ccCCCeeEEEEcCCC-eEEEE-eCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 386 GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sg-s~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
.+...+....|+|+| .|+.+ ..++...||++... .....+.+.. .+.+|+| ++++|+..+.++ +.+||+.+++
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCC
Confidence 345567789999999 55544 46788888876532 2223334443 4678999 899998887765 5669999887
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
...+... .....+.|+|||++|+.++.+|.+.+|++
T Consensus 365 ~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 365 TEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred eEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 6544322 23456889999999999999998887765
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.1e-13 Score=130.13 Aligned_cols=170 Identities=25% Similarity=0.318 Sum_probs=139.9
Q ss_pred ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (519)
+.+.+.+|.+.|++|.|+.++++||+|+.|..+++|++...-..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~------------------------------------ 91 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR------------------------------------ 91 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh------------------------------------
Confidence 34567899999999999999999999999999999998542110
Q ss_pred eeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCC---c
Q 010037 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y 430 (519)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~---~ 430 (519)
...+|+.... .|...|.|++|...+ .|++|..+++|.+.|+.+.+.+.++.|.. .
T Consensus 92 --------------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 92 --------------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred --------------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 0113333333 366899999999888 99999999999999999999999998766 9
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc----EEeeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCC
Q 010037 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~ 502 (519)
|+.+..+| ..+.|++.+.++.|.+||.+..+ ++...........+.|+|.. .+|++++..|-+.+||.+..
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 99999999 68999999999999999998765 33455566678889999965 56788899999999998754
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.9e-12 Score=135.97 Aligned_cols=256 Identities=16% Similarity=0.206 Sum_probs=163.5
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCe
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
.+.|+|-...++++....+|+|||+.+... +..+... ..-...|..|.+-. |..+|++|+.||.||||+-....
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 478999999999999899999999987654 2222111 12345788999866 45689999999999999753221
Q ss_pred -eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037 318 -RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (519)
Q Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (519)
....+-..............+.+.+..+.-..+ ..+..+.-..+.+|+...-... .....+....|+.+.-
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~tGd~r~IRIWDa~~E~~~---~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-----HLLVTGDVRSIRIWDAHKEQVV---ADIPYGSSTLVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCC-----eEEecCCeeEEEEEecccceeE---eecccCCCccceeecc
Confidence 111221111111122222222222222211111 1123333456667766542211 1111234455666654
Q ss_pred cC-CC-eEEEEeCCCcEEEEECCCCeE---EEEec-CCCc--EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---e
Q 010037 397 SK-NG-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---D 465 (519)
Q Consensus 397 sp-~~-~L~sgs~Dg~V~lWdl~~~~~---~~~~~-h~~~--V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~ 465 (519)
+. .| .++.|..||.|++||.+.... +.... |+.. |..+.+.+..-..|++|+.||.|++||++..... .
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 43 34 999999999999999987543 33333 7777 9999999843446999999999999999984222 2
Q ss_pred eccC---CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037 466 YTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 466 ~~~~---~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~ 508 (519)
...| ++.++++..+++...+|+|+. +.|+||++.+.++-.+.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence 2222 335999999999999999998 99999999987765443
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.2e-13 Score=130.71 Aligned_cols=162 Identities=31% Similarity=0.467 Sum_probs=125.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (519)
Q Consensus 288 ~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 367 (519)
.+++|+.+|..|++|+.||++|||++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------------------------------------------------- 178 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------------------------------------------------- 178 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence 7899999999999999999999999755432
Q ss_pred EeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCC--
Q 010037 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD-- 441 (519)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~-- 441 (519)
+.....|.+.|.+|.|+|+| .|++-+.| ..+||+++++.++.... .......+.|+. ++
T Consensus 179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 23345689999999999999 99999999 99999999997776654 444566777876 44
Q ss_pred -CEEE--EEeCCCeEEEEEcCCCc---EE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccccce
Q 010037 442 -NYFI--SGSIDGKVRIWEVRRCQ---VV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAY 512 (519)
Q Consensus 442 -~~l~--sgs~Dg~V~iwd~~~~~---~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~ 512 (519)
.+++ .-..-+.|+.|++.... .+ +.......|++++.++||++++.|+.||.|-||+..+.+.+++.....
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH 323 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH 323 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence 3333 33345677777764322 12 333445689999999999999999999999999999998887755543
Q ss_pred e
Q 010037 513 L 513 (519)
Q Consensus 513 ~ 513 (519)
.
T Consensus 324 ~ 324 (398)
T KOG0771|consen 324 L 324 (398)
T ss_pred e
Confidence 3
No 198
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=6.5e-12 Score=115.80 Aligned_cols=148 Identities=20% Similarity=0.427 Sum_probs=107.0
Q ss_pred eeecCCCCeEEeeec----------CCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEEEEE--eCCCc
Q 010037 241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASG--GEDGT 307 (519)
Q Consensus 241 ~~~sp~g~~lasgs~----------dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSg--s~Dg~ 307 (519)
+.|+|+|.+|++-.. -|...+|.++....... .+. ...++|.+++|+|+|+.||.. ..++.
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~------~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE------SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc------eeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 679999988876332 24456666543222221 122 235679999999999987654 45789
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.+||+. ++. +..+ +
T Consensus 85 v~lyd~~-~~~--------------------------------------------------------------i~~~--~ 99 (194)
T PF08662_consen 85 VTLYDVK-GKK--------------------------------------------------------------IFSF--G 99 (194)
T ss_pred cEEEcCc-ccE--------------------------------------------------------------eEee--c
Confidence 9999984 211 1222 2
Q ss_pred CCCeeEEEEcCCC-eEEEEeC---CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC------CCeEEEEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWE 457 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~---Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~iwd 457 (519)
...+..+.|+|+| +|++++. .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++.. |..++||+
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEE
Confidence 4567789999999 8887764 4679999999999998888765 78999999 9999998874 78899999
Q ss_pred cCCC
Q 010037 458 VRRC 461 (519)
Q Consensus 458 ~~~~ 461 (519)
....
T Consensus 178 ~~G~ 181 (194)
T PF08662_consen 178 FQGR 181 (194)
T ss_pred ecCe
Confidence 8644
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=129.57 Aligned_cols=254 Identities=18% Similarity=0.245 Sum_probs=172.4
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEecccCe
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
..|++|++.++... ...|+||....+. +...+.+|..++..+.+.|.. .++.+++.||.|++||...+.
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 47999999887764 5789999987544 334688999999999998844 478899999999999999999
Q ss_pred eeceeeccCCCCceEEEeecCCC--CeEEeeccCCce---------------------------------eeeeeeccCC
Q 010037 318 RLDGFDVQDTDPSCLYFTINHLS--QLIPIDVDKEKI---------------------------------DKTKSLRKSS 362 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------------------------~~~~~~~~s~ 362 (519)
.++.+...-....... .+.... ............ ........+.
T Consensus 94 Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 8887765443222211 010000 000000000000 0001111112
Q ss_pred CeeEEEeCCcccccc--ccc-----eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--C--eEEEEec-CCC
Q 010037 363 DLTCVVLPPKVFRLL--EKP-----LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D--RCLRVFS-HNN 429 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~--~~~-----~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~--~--~~~~~~~-h~~ 429 (519)
....++.....+.+. .+. ...-..|.-.++|.+++|++ ++++|..||.|.+|.--. + .....+. |..
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 222222111111110 000 00112366678999999999 999999999999996332 1 1223333 899
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
.|++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.++...|+.|.+..+.+..+
T Consensus 253 ~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 253 EVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 999999999 99999999999999999999999666778889999999999999999999999999998866543
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=7.6e-11 Score=118.64 Aligned_cols=246 Identities=12% Similarity=0.130 Sum_probs=145.3
Q ss_pred ccceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeccc
Q 010037 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE 315 (519)
Q Consensus 238 ~~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~ 315 (519)
...++++|++++|+++ ..++.|.+|++.... .+... ... ...+....+.|+|++++|++++. ++.|.+|++.+
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~~~---~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALTFA---AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceEEe---eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 3457999999998765 458899999986321 11111 111 12234678999999998888764 88999999964
Q ss_pred Ceee-ceeec--cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc-ccccc--eeEeeccCC
Q 010037 316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEKP--LHEFQGHSS 389 (519)
Q Consensus 316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~--~~~~~~h~~ 389 (519)
.... ..... ....+..+.+.++. ..++. ....+..+.+|+..... +.... ..... ...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g-~~l~v--------------~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~ 175 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDN-RTLWV--------------PCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGA 175 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCC-CEEEE--------------eeCCCCEEEEEEECCCCcccccCCCceecC-CCC
Confidence 3211 11111 11122233333322 11111 12233344444433211 11000 00111 123
Q ss_pred CeeEEEEcCCC-eEEEEeC-CCcEEEEECCC--C--eEEEEec-------CCCcEEEEEEeeCCCCEEEEEeC-CCeEEE
Q 010037 390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--D--RCLRVFS-------HNNYVTSVAFNPVDDNYFISGSI-DGKVRI 455 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~-Dg~V~lWdl~~--~--~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~i 455 (519)
....++|+|++ +|+++.. +++|.+|++.. + +.+..+. +......+.++| ++++++++.. ++.|.+
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV 254 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence 46789999999 7766655 89999999973 3 2333332 122344689999 8998888754 789999
Q ss_pred EEcCCCc-EE---eeccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECC--CCeee
Q 010037 456 WEVRRCQ-VV---DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--GMQIF 505 (519)
Q Consensus 456 wd~~~~~-~~---~~~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~--~~~l~ 505 (519)
|++.... .+ ...........++++|||++|+++.. +++|.+|++. ++.+.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 9996532 22 22222234568899999999998775 8899999874 45543
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2.3e-11 Score=116.07 Aligned_cols=232 Identities=14% Similarity=0.209 Sum_probs=156.5
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC--CcEEEEecccCe
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVIEHE 317 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D--g~I~iWd~~~~~ 317 (519)
...|+.+...|..|+.+| .+++......+-.. .....-.|.-+-|+.. ++|..+.+ +.+++.++..+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred eeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 355888999999999998 57777664333111 1112235666777644 55555544 458888887776
Q ss_pred eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (519)
.+..+..+. .++.+.+...+... .....+++++.+.+.+... +.....+...+..++.+
T Consensus 80 ~ICe~~fpt--------------~IL~VrmNr~RLvV------~Lee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 80 TICEIFFPT--------------SILAVRMNRKRLVV------CLEESIYIYDIKDMKLLHT-IETTPPNPKGLCALSPN 138 (391)
T ss_pred eEEEEecCC--------------ceEEEEEccceEEE------EEcccEEEEecccceeehh-hhccCCCccceEeeccC
Confidence 555544322 22333222222111 1122356666655543211 11222345556677776
Q ss_pred CCC-eEEE--EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcEEe-ecc--C
Q 010037 398 KNG-FLLS--SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD--I 469 (519)
Q Consensus 398 p~~-~L~s--gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~~~-~~~--~ 469 (519)
+.+ +|+- ....|.|.|||+.+-+++..+. |.+.+-|++|+| +|.+||++|..|+ |||+.+.+++.+. +.. .
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence 666 6664 2356899999999999998886 999999999999 9999999999886 8999999998873 322 2
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
...|.+++|+||+++|++.+..++|+||.+....
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 4568899999999999999999999999997654
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.44 E-value=2.7e-11 Score=122.94 Aligned_cols=209 Identities=16% Similarity=0.232 Sum_probs=139.4
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc-ccccccc---------------------------ccee
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYT---------------------------GQEF 280 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~-~~~~~~~---------------------------~~~l 280 (519)
..+++|.+.|.+++++.+|+.+|+|+.|+.|.||.-+-... ..+.... .+..
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence 45778899999999999999999999999999998652110 0000000 0011
Q ss_pred ecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeec---cCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037 281 LAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (519)
Q Consensus 281 ~~H--~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (519)
..| ...|.+++|..||+||+.|-.||+|.|-+- +++....++. ...++..+.|++.......
T Consensus 127 ~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~------------ 193 (1081)
T KOG1538|consen 127 SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN------------ 193 (1081)
T ss_pred HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc------------
Confidence 122 235778889999999999999999998864 3333333433 3445556666665431110
Q ss_pred eeeccCCCeeEEEeCCcc--ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcE
Q 010037 356 KSLRKSSDLTCVVLPPKV--FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV 431 (519)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V 431 (519)
.-..++-|.... ..+.++.+..-+.-.-...|+.+.++| +++.|+.|+.+++|. +.|-.+.++. ....|
T Consensus 194 ------di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 194 ------DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWI 266 (1081)
T ss_pred ------ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeE
Confidence 000111121110 112222233223334456799999999 999999999999995 6677777776 77899
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 432 TSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
+.|+..| ++++++.|+.||+|..|++
T Consensus 267 WtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 267 WTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEEcc-CCceEEEEEccCeeehhhh
Confidence 9999999 9999999999999999975
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.9e-11 Score=128.20 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=152.9
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
+.+.++||+++++|+|..||+|.||.--.... .-...+.+.-|...|.++.|+++|.+|+|||..|.+.+|.+.+++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 56789999999999999999999997654211 122345678899999999999999999999999999999999988
Q ss_pred eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec-----------c---------CCCeeEEEeCCccc--c
Q 010037 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR-----------K---------SSDLTCVVLPPKVF--R 375 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------s~~~~~~~~~~~~~--~ 375 (519)
.+-+......+..+.++++ +..+++......+....... . ..-.....++++.. .
T Consensus 285 -kqfLPRLgs~I~~i~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -cccccccCCeeEEEEEcCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 3333333334444444433 33333333333222111100 0 00001111222110 0
Q ss_pred ccccc--eeEee----------------------ccCCCeeEEEEcCCC-eEEEEe--------CC--CcEEEEECCCCe
Q 010037 376 LLEKP--LHEFQ----------------------GHSSEVLDLSWSKNG-FLLSSS--------AD--KTVRLWQVGIDR 420 (519)
Q Consensus 376 ~~~~~--~~~~~----------------------~h~~~V~~l~~sp~~-~L~sgs--------~D--g~V~lWdl~~~~ 420 (519)
+.+++ ++.+. .+.-.++.++.+-.| +++|.- .| -.+++|......
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 00111 11110 011124444444455 555542 22 246778665443
Q ss_pred EEEEe------cCCCcEEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCc----------EE-eeccCCCceEEEEEeeCC
Q 010037 421 CLRVF------SHNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQ----------VV-DYTDIREIVSAVCYCPDG 482 (519)
Q Consensus 421 ~~~~~------~h~~~V~~v~fsp-~d~~~l~sgs~Dg~V~iwd~~~~~----------~~-~~~~~~~~V~~v~~spdg 482 (519)
.-..+ +|...+...++.+ .....+++++.||.++||-+...+ +. .-..|..++++++|+.||
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG 521 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG 521 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence 22222 3776665555544 233389999999999999883321 11 112378899999999999
Q ss_pred CEEEEEecCCeEEEEECCC
Q 010037 483 KGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 483 ~~l~sgs~dg~v~iwdl~~ 501 (519)
.. ++.+.+++|.+||..+
T Consensus 522 sl-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 522 SL-LAVSFDDTITIWDYDT 539 (792)
T ss_pred cE-EEEecCCEEEEecCCC
Confidence 75 5556688999999987
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=8e-12 Score=119.92 Aligned_cols=202 Identities=15% Similarity=0.261 Sum_probs=149.6
Q ss_pred CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCC--CcEEEEecccCeeeceee
Q 010037 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFD 323 (519)
Q Consensus 247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~D--g~I~iWd~~~~~~~~~~~ 323 (519)
+..|++|-.+|.+.+|..+.....-+.+ ..+..| ..+..|.-++... ++|+||.. ..+.|||+...+.+..-+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 3467788899999999988444221111 122223 4566777777544 55668888 789999998774332211
Q ss_pred ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-
Q 010037 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G- 400 (519)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~- 400 (519)
...... .+..+ .-.++++.|-+. .
T Consensus 191 NvpnD~--------------------------------L~LrV---------------------PvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 191 NVPNDR--------------------------------LGLRV---------------------PVWITDIRFLEGSPNY 217 (412)
T ss_pred CCCCcc--------------------------------cccee---------------------eeeeccceecCCCCCc
Confidence 111000 00011 123556677665 4
Q ss_pred eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEE
Q 010037 401 FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAV 476 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v 476 (519)
.|++++.-+.||+||.+.+ +++..|. -..+++++...| +++++++|..-|.+..+|++.++.+ .+.+..+.|++|
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 9999999999999999875 5777776 678899999999 9999999999999999999999888 378899999999
Q ss_pred EEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
..+|.+++|++++.|..|||+|+.+.+++.
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhh
Confidence 999999999999999999999999976643
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3e-11 Score=125.68 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=132.6
Q ss_pred ecccceeecCCCCeEEeee---cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCC--cEE
Q 010037 236 DRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TVR 309 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs---~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg--~I~ 309 (519)
..+...+|+|||+.|+..+ ....|.+|++..+.... +....+.+..+.|+|||+.|+.. +.+| .|.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 3455689999999998654 34578999987543221 11222334468999999988754 4455 477
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+||+.+++.. .+..+..
T Consensus 271 ~~d~~tg~~~---------------------------------------------------------------~lt~~~~ 287 (429)
T PRK03629 271 VMDLASGQIR---------------------------------------------------------------QVTDGRS 287 (429)
T ss_pred EEECCCCCEE---------------------------------------------------------------EccCCCC
Confidence 7887655421 1111233
Q ss_pred CeeEEEEcCCC-eEEEEeCC-Cc--EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCc
Q 010037 390 EVLDLSWSKNG-FLLSSSAD-KT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQ 462 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~D-g~--V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~~~ 462 (519)
.+....|+|+| .|+..+.+ +. |.++|+.++.......+........|+| ++++|+..+.+ ..|.+||+.+++
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC
Confidence 46678999999 67666543 44 4555777766554444555667899999 88888776543 358899999887
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecCCe---EEEEECCCCeeeecc
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN---CRFYDIKGMQIFDLS 508 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~---v~iwdl~~~~l~~~~ 508 (519)
...+... .......|+|||++|+.++.++. +.++++.+.....+.
T Consensus 367 ~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 367 VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 6654432 23456789999999999888764 778888766555553
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.9e-11 Score=126.23 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=139.4
Q ss_pred eeeEeecccceeecCCCCeEEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG 306 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg 306 (519)
++.+...+.+.+|+|||+.|+..+. +..|.+|++..+.. +.+..+.+.+....|+|||+.|+ +.+.++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 3334445667899999999988653 46899999875432 12445667788899999998775 556666
Q ss_pred c--EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037 307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (519)
Q Consensus 307 ~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
. |.+||+.++.. ..+
T Consensus 269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L 285 (435)
T PRK05137 269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL 285 (435)
T ss_pred CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence 5 55556654432 112
Q ss_pred eccCCCeeEEEEcCCC-eEEEEeC-C--CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEE
Q 010037 385 QGHSSEVLDLSWSKNG-FLLSSSA-D--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE 457 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~-~L~sgs~-D--g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd 457 (519)
..+........|+|+| .|+..+. + ..|.+||+.++.......+...+....|+| ++++|+....+ ..|.+||
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence 2233345567999999 6666553 3 368888988776655554566677889999 89988876643 3688899
Q ss_pred cCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC------CeEEEEECCCCeeeecc
Q 010037 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 458 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d------g~v~iwdl~~~~l~~~~ 508 (519)
+.++....+.. ...+..+.|+|||+.|+..+.+ ..+.++|+.++....+.
T Consensus 365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 86655443322 3346788999999998876543 35888898877665544
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.2e-11 Score=125.83 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=135.5
Q ss_pred EeecccceeecCCCCeEEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC--c
Q 010037 234 IIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--T 307 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~ 307 (519)
+...+.+.+|+|+|+.|+..+. ...|.+|++..+... .+..+.+...++.|+|||+.|+ +.+.+| .
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 3345566899999999988763 346999998754421 1233344455789999999775 455555 4
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.+||+.+++.. .+..+
T Consensus 274 Iy~~d~~~g~~~---------------------------------------------------------------~lt~~ 290 (433)
T PRK04922 274 IYVMDLGSRQLT---------------------------------------------------------------RLTNH 290 (433)
T ss_pred EEEEECCCCCeE---------------------------------------------------------------ECccC
Confidence 888887655421 11223
Q ss_pred CCCeeEEEEcCCC-eEEEEe-CCCc--EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRR 460 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs-~Dg~--V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~ 460 (519)
.......+|+|+| .|+.++ .++. |.++|+.+++......+......++|+| ++++++..+.++ .|.+||+.+
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC
Confidence 3334567899999 666655 3444 6777777776554444445566799999 899888765443 699999988
Q ss_pred CcEEeeccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeecc
Q 010037 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~~ 508 (519)
++...+.. ........|+|||++|+..+.+ +.+.++++.++....+.
T Consensus 370 g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 370 GSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 87664443 2245567999999988877653 45888888766555443
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=1.2e-11 Score=129.18 Aligned_cols=225 Identities=18% Similarity=0.223 Sum_probs=150.8
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeee--ceee----ccCCCC
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFD----VQDTDP 329 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~--~~~~----~~~~~~ 329 (519)
+.+.||+++..... +....-...|.|++|+| +..+||.|..+|+|.+||+..+... ..+. .+..++
T Consensus 222 ~~~~vW~~~~p~~P-------e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-------ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCc-------eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 47999999864211 11223467899999999 6778899999999999999877652 1111 122222
Q ss_pred ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cce-eEee------ccCCCeeEEEEcCCC-
Q 010037 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPL-HEFQ------GHSSEVLDLSWSKNG- 400 (519)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~-~~~~------~h~~~V~~l~~sp~~- 400 (519)
..+.|..+ ... ...+..+.|+.+..|..+...... ... .... .....+++++|.+..
T Consensus 295 ~~vvW~~~-------------~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 295 TAVVWLQN-------------EHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred EEEEEecc-------------CCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence 22333222 222 334555668888888766554411 111 1111 223578999999977
Q ss_pred -eEEEEeCCCcEEEEE---CCCCe-----EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC-CCcEE-eecc
Q 010037 401 -FLLSSSADKTVRLWQ---VGIDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTD 468 (519)
Q Consensus 401 -~L~sgs~Dg~V~lWd---l~~~~-----~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~-~~~~~-~~~~ 468 (519)
.++.|+.+|.|.-=+ ..... .+..+ .|.+.|+++.++|.....|++++ |-+|+||.-. ...++ .+..
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh
Confidence 999999999988733 22222 12122 38999999999997667777766 9999999877 44444 5667
Q ss_pred CCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCe
Q 010037 469 IREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 469 ~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+...|++++|||.. ..++++..||.+.|||+....
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 77779999999976 457778889999999997543
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=3.5e-10 Score=106.16 Aligned_cols=212 Identities=12% Similarity=0.182 Sum_probs=138.8
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc-cCeeeceeeccCCCCceEEEe
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFT 335 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 335 (519)
..|.|||-.+... .. ++ ....+|.+|.+.++ .|+..- .+.|.||.+. ..+.+..+.....+...+...
T Consensus 75 NkviIWDD~k~~~-i~------el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERC-II------EL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcE-EE------EE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 5799999432221 11 11 24678999999865 465554 5689999997 455566665544443334444
Q ss_pred ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCc-EEE
Q 010037 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRL 413 (519)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~-V~l 413 (519)
+.....++++.... -+.+.+.+...... .+-..+.+|.+.|.|++.+.+| .+||+|..|+ |||
T Consensus 144 ~~~~k~~LafPg~k-------------~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFK-------------TGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred CCCCceEEEcCCCc-------------cceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 44333333322211 12222222111111 0235678999999999999999 9999999998 799
Q ss_pred EECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc---E-----------E-e----------
Q 010037 414 WQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---V-----------V-D---------- 465 (519)
Q Consensus 414 Wdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~---~-----------~-~---------- 465 (519)
||..++..+..+. ....|.||+|+| +..+|++.|..|+|+|+.++... . + +
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~ 287 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAK 287 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEE
Confidence 9999999999996 667899999999 99999999999999999987522 1 1 1
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCR 495 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~ 495 (519)
+.-..+....++|-.+.+-++..+.||.-+
T Consensus 288 f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 288 FQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred EEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 111223444566766655666666777643
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=8.4e-11 Score=106.28 Aligned_cols=197 Identities=14% Similarity=0.195 Sum_probs=141.7
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
-.++++.+.|..+-++.++.|+.++-||++.+.. ..+++||++-|.++.--.....++||++||++||||..+
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEE-------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 4566788999888888888999999999986553 356899999999999855455688999999999999999
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC-CCeeEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDL 394 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l 394 (519)
+++...+...... ..+..|. ..|-++
T Consensus 188 ~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wigal 214 (325)
T KOG0649|consen 188 QKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGAL 214 (325)
T ss_pred cceeEEeccccCh-----------------------------------------------------hhcCcccCceeEEE
Confidence 9876655432211 1122232 346777
Q ss_pred EEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (519)
Q Consensus 395 ~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 474 (519)
+-+.+ +|+.|+ ...+.+|+++..++..+|.....|..+.|. ...+++++....|.-|.+..--...........+
T Consensus 215 a~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~ 289 (325)
T KOG0649|consen 215 AVNED-WLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACY 289 (325)
T ss_pred eccCc-eEEecC-CCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCcccee
Confidence 76544 666655 467999999999999999999999999995 4678888888889999886533333333333455
Q ss_pred EEEEeeCC-CEEEEEecCCeEEEE
Q 010037 475 AVCYCPDG-KGGIVGTMTGNCRFY 497 (519)
Q Consensus 475 ~v~~spdg-~~l~sgs~dg~v~iw 497 (519)
+..|+... ++|-.++....+.|+
T Consensus 290 s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 290 SASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eecccCCceEEEEecccceeeeee
Confidence 55555443 344456666666665
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=1.6e-13 Score=142.01 Aligned_cols=120 Identities=31% Similarity=0.607 Sum_probs=106.9
Q ss_pred cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (519)
Q Consensus 273 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (519)
.....+.+.+|..+|+|+.|...|.++++|+.|..|+||...+..+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------------------- 224 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------------------- 224 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh----------------------------------
Confidence 3445566889999999999999999999999999999999877664
Q ss_pred eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc
Q 010037 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY 430 (519)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~ 430 (519)
+....||.+.|++++.+.++ .+++++.|..|++|.+.++.++.++. |.+.
T Consensus 225 ----------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 225 ----------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred ----------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 33457899999999999988 99999999999999999999998875 9999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
|++|+|+| +.+.+.||++++||.+
T Consensus 277 vtaiafsP-----~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 277 VTAIAFSP-----RASSSDDGTCRIWDAR 300 (1113)
T ss_pred eeeeccCc-----cccCCCCCceEecccc
Confidence 99999999 3477889999999988
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=114.46 Aligned_cols=199 Identities=14% Similarity=0.289 Sum_probs=141.4
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
++|++.-..+|++..|-.|++|+-.... .. .++ .-+..|.||+|-|.+ ..|+.|+.. -|.||.......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst~--pt------~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--PT------KLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCCC--Cc------eecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 6899977788899999999999876411 11 111 234679999999954 577777765 589998743211
Q ss_pred eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
.... +..-..+ ...+....+| ..|++|.|.+
T Consensus 175 ~~r~---------~~~~s~~---------------------------------------~~qvl~~pgh-~pVtsmqwn~ 205 (445)
T KOG2139|consen 175 ANRN---------IRMMSTH---------------------------------------HLQVLQDPGH-NPVTSMQWNE 205 (445)
T ss_pred cccc---------ccccccc---------------------------------------chhheeCCCC-ceeeEEEEcC
Confidence 0000 0000000 0012223455 7899999999
Q ss_pred CC-eEEEEe-CCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc-CCCcEEeeccCCCceE
Q 010037 399 NG-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVS 474 (519)
Q Consensus 399 ~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~-~~~~~~~~~~~~~~V~ 474 (519)
+| .|++++ .|..|.|||..++.++... ...+.++-+.|+| |+.+|.++.-|+..++|+. ++.....+.-..+.|.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq 284 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ 284 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence 99 888877 5678999999999888776 3667789999999 9999999999999999955 4455556777777999
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 475 AVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
..+|+|+|..|+.+.. |.-++|.+
T Consensus 285 tacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred eeeecCCCCEEEEEEc-CCceEEEE
Confidence 9999999998776553 34456655
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.2e-10 Score=119.64 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=128.0
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEecccCeeeceeeccCCCCceE
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (519)
...|.++|..... .+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------------- 239 (435)
T PRK05137 181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------------- 239 (435)
T ss_pred ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence 3478888875322 2345678889999999999999888764 468999998766421
Q ss_pred EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EEEeCCCc
Q 010037 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT 410 (519)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~sgs~Dg~ 410 (519)
.+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 112234456678999999 55 46666655
Q ss_pred --EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEE
Q 010037 411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (519)
Q Consensus 411 --V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (519)
|.+||+.++.......+....+...|+| +++.|+..+. +| .|++||+.++....+......+....|+|||+.|
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 7777998887766555666778899999 8888887663 33 6888898887766655555567778999999999
Q ss_pred EEEecC---CeEEEEECCCCeee
Q 010037 486 IVGTMT---GNCRFYDIKGMQIF 505 (519)
Q Consensus 486 ~sgs~d---g~v~iwdl~~~~l~ 505 (519)
+....+ ..|.+||+.++...
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~~ 371 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGER 371 (435)
T ss_pred EEEEcCCCceEEEEEECCCCceE
Confidence 887653 35888998665443
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.6e-10 Score=120.23 Aligned_cols=197 Identities=21% Similarity=0.215 Sum_probs=129.0
Q ss_pred eecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEE
Q 010037 235 IDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRV 310 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~i 310 (519)
...+.+.+|+|+|+.|+..+.. ..|.+|++..+... .+....+.+....|+|||+.|+ +.+.+|...|
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 3455568999999999876643 45999998755421 1223345567889999999876 5677888777
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
|.+..... ....+..+...
T Consensus 267 y~~d~~~~-------------------------------------------------------------~~~~lt~~~~~ 285 (427)
T PRK02889 267 YTVNADGS-------------------------------------------------------------GLRRLTQSSGI 285 (427)
T ss_pred EEEECCCC-------------------------------------------------------------CcEECCCCCCC
Confidence 76532110 01112223334
Q ss_pred eeEEEEcCCC-eEEEEe-CCCcEEEEEC--CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcE
Q 010037 391 VLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV 463 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs-~Dg~V~lWdl--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~ 463 (519)
.....|+|+| .|+..+ .++...||.+ .++...............+|+| ++++++..+.++ .|.+||+.+++.
T Consensus 286 ~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 286 DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 5567899999 666554 3456666654 4554433333344455789999 999988777654 699999998876
Q ss_pred EeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCC
Q 010037 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGM 502 (519)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~ 502 (519)
..+... .......|+|||+.|+.++.++ .+.+.++.+.
T Consensus 365 ~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 365 TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 654433 3346789999999988877654 3666666443
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.5e-11 Score=123.86 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=121.8
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceE
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (519)
+..|.|||...... +.+..|...|...+|+|||++|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------ 242 (429)
T ss_pred eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence 57899999864331 3456788899999999999999987654 369999987664210
Q ss_pred EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE-eCCCc
Q 010037 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT 410 (519)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg-s~Dg~ 410 (519)
+..+.+| ...++|+|+| .|+.+ +.++.
T Consensus 243 ------------------------------------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 243 ------------------------------------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ------------------------------------------------EecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 1112223 2357999999 66665 46777
Q ss_pred EEEE--ECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCC--CcEEeeccCCCceEEEEEeeCCCEE
Q 010037 411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG 485 (519)
Q Consensus 411 V~lW--dl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~--~~~~~~~~~~~~V~~v~~spdg~~l 485 (519)
+.|| |+.++.......+...+...+|+| ++..|+..+ .+|..+||++.. +... ...+.. ..+.|+|||++|
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGAS-LVGGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EecCCC--CCccCCCCCCEE
Confidence 6555 677776655555777788999999 888766555 578888887643 3322 223333 457899999999
Q ss_pred EEEecCCeEEEEECCCCeeeec
Q 010037 486 IVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 486 ~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
+.++.++ +.+||+.+++...+
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~l 368 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVL 368 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEe
Confidence 8887765 55699988765433
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=2.6e-10 Score=107.03 Aligned_cols=229 Identities=14% Similarity=0.219 Sum_probs=139.7
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC--CEEEEEEccCCCEEEEE-eCC------CcEEEE
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLASG-GED------GTVRVW 311 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~LaSg-s~D------g~I~iW 311 (519)
++|+.|...+++|..+| .+||+.+.-+..... +.+.+ .+.-|-| -.++||-. |.+ ..|.||
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r-------~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-------QFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhh-------ccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 78999999999998877 899998853332211 11222 2223333 23455443 332 479999
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc--CC
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH--SS 389 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h--~~ 389 (519)
|=....++.++..... +..+. +....+... ....+.+|.-. -..+.++.+..- ..
T Consensus 81 DD~k~~~i~el~f~~~-I~~V~-------------l~r~riVvv------l~~~I~VytF~---~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSE-IKAVK-------------LRRDRIVVV------LENKIYVYTFP---DNPKLLHVIETRSNPK 137 (346)
T ss_pred ecccCcEEEEEEeccc-eeeEE-------------EcCCeEEEE------ecCeEEEEEcC---CChhheeeeecccCCC
Confidence 9655555554443221 11111 111111000 01111111111 001223333221 22
Q ss_pred CeeEEEEcCCC-eEEE-EeCCCcEEEEECCCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcE
Q 010037 390 EVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQV 463 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~s-gs~Dg~V~lWdl~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~ 463 (519)
.+.+++-..+. +|+. |-.-|.|.|-|+...+. .....|...|.|++.+- +|..+||+|..|+ |||||..++..
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE
Confidence 23333222222 4443 44568999999987665 44556999999999999 9999999999996 89999999988
Q ss_pred Ee---eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 464 VD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 464 ~~---~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+. .......|.+++|+|+..+|++++..|+++||.++...
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 74 22345679999999999999999999999999998643
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.4e-10 Score=121.01 Aligned_cols=180 Identities=19% Similarity=0.159 Sum_probs=126.1
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEE
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (519)
.+|.+||..... .+.+..|...+.+.+|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 468888875322 12355677889999999999999987743 468899986654210
Q ss_pred EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EEEeCCC--
Q 010037 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK-- 409 (519)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~sgs~Dg-- 409 (519)
+..+.+.....+|+|+| .| ++.+.++
T Consensus 243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 11112233467899999 55 4555555
Q ss_pred cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 486 (519)
.|.+||+.+++......+.......+|+| ++++|+..+. +| .|.++|+.+++...+.........++|+|||++|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999988765555666667899999 8988887664 44 47777887776654444444456789999999998
Q ss_pred EEecCC---eEEEEECCCCeeeecc
Q 010037 487 VGTMTG---NCRFYDIKGMQIFDLS 508 (519)
Q Consensus 487 sgs~dg---~v~iwdl~~~~l~~~~ 508 (519)
..+.++ .|.+||+.+++...+.
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEECC
Confidence 766543 5999999888766554
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=4.7e-11 Score=119.60 Aligned_cols=113 Identities=12% Similarity=0.235 Sum_probs=95.0
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
..|+++.|+.+| .++.|+.+|.|.|||+++.+++..-.|. -+|..+.|.+.++.--+.......++|||-.+++...
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCcee
Confidence 459999999999 9999999999999999999998887754 5789999988433333333445689999999999998
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.......++.+|+-|++-++++|-.++.+..|=+..
T Consensus 309 siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 309 SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 888888899999999999999999998888876653
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=8.6e-12 Score=113.89 Aligned_cols=151 Identities=18% Similarity=0.278 Sum_probs=117.3
Q ss_pred eEEeeecCCeEEEeeCCccccccccc---cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 249 ELTLGQRMRRVRVHPVKKQSRELSSL---YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 249 ~lasgs~dg~I~vw~~~~~~~~~~~~---~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
++++|..+|.|.+||+..+.+.+.-. ........|..+|.++.|.+.-..=++|+.+..+..|.+........+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence 56789999999999998764433211 122234679999999999886555678888889999988543210000
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s 404 (519)
-.+..-.+-.|..+..-|++ .|+|
T Consensus 244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT 268 (323)
T KOG0322|consen 244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT 268 (323)
T ss_pred -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence 00111224457788888999 9999
Q ss_pred EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 405 gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
++.|+.||||..++..++.+++ |...|++++|+| +.+++|+++.|++|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999998 999999999999 8899999999999999986
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.6e-10 Score=116.83 Aligned_cols=180 Identities=14% Similarity=0.058 Sum_probs=124.5
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEecccCeeeceeeccCCCCceEE
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (519)
..|.++|...... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------- 237 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence 4688888764332 234456778999999999999886542 3468888886654210
Q ss_pred EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE-EeCCC--
Q 010037 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS-SSADK-- 409 (519)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s-gs~Dg-- 409 (519)
+..+.++ +...+|+|+| .|+. .+.++
T Consensus 238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 1111222 3457899999 5554 34454
Q ss_pred cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 486 (519)
.|.+||+.+++..+...+...+....|+| +++.|+..+.+ + .|.++|+.+++...+..........+|+|||++|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 58999999988776666666788999999 89988776654 3 45555777776655544445567789999999988
Q ss_pred EEecC---CeEEEEECCCCeeeecc
Q 010037 487 VGTMT---GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 487 sgs~d---g~v~iwdl~~~~l~~~~ 508 (519)
..+.+ ..|.+||+.+++...+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEEeC
Confidence 76653 35889999888765543
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=2e-12 Score=126.34 Aligned_cols=190 Identities=15% Similarity=0.205 Sum_probs=157.0
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~ 319 (519)
.+.++.+|.+|+.|+..|.|..+|+......+ ++. -...|.++.|-.+.+++|.+ ....+.|||-..-+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-------Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE-- 202 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-------EIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE-- 202 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeee-------eee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE--
Confidence 46788899999999999999999998654322 111 23568899999888888876 55689999853222
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
++-++. ...|..+.|-|.
T Consensus 203 -------------------------------------------------------------lHClk~-~~~v~rLeFLPy 220 (545)
T KOG1272|consen 203 -------------------------------------------------------------LHCLKR-HIRVARLEFLPY 220 (545)
T ss_pred -------------------------------------------------------------Eeehhh-cCchhhhcccch
Confidence 122222 356888999999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEE
Q 010037 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (519)
Q Consensus 400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v 476 (519)
. +|++++..|.++.-|+.+|+.+..+. ..+.+..+.-+| -+..+-+|...|+|.+|.....+.+ .+..|.++|.+|
T Consensus 221 HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 221 HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 9 88899999999999999999998886 677888899999 7888999999999999999988776 688999999999
Q ss_pred EEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
++.++|+++||.+.|..|+|||++.-.
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred EECCCCcEEeecccccceeEeeecccc
Confidence 999999999999999999999998643
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=4.8e-10 Score=116.59 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=133.0
Q ss_pred ccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCC--cEEEE
Q 010037 238 HGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVW 311 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg--~I~iW 311 (519)
+...+|+|+|++|+.+... ..|++|++..+... .+..+.+.+.+++|+|||+.|+. .+.++ .|.+|
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 4457899999999887644 47999998754321 12335566778999999987764 44444 47777
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
++.++... .+..+....
T Consensus 264 d~~~~~~~---------------------------------------------------------------~l~~~~~~~ 280 (417)
T TIGR02800 264 DLDGKQLT---------------------------------------------------------------RLTNGPGID 280 (417)
T ss_pred ECCCCCEE---------------------------------------------------------------ECCCCCCCC
Confidence 77554321 011122233
Q ss_pred eEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcEE
Q 010037 392 LDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVV 464 (519)
Q Consensus 392 ~~l~~sp~~-~L~sgs~-Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~~ 464 (519)
....|+|++ .|+..+. .+ .|.++|+.+++......+...+..+.|+| ++++++.++.++ .|.+||+.++...
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 456789998 6665543 33 58888888877655555667788899999 899998888776 8999999886654
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeec
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDL 507 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~ 507 (519)
.+... .......|+|||++|+..+.++ .+++.+..+.....+
T Consensus 360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 43332 2345568999999988877754 466777666554444
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=6.7e-11 Score=117.70 Aligned_cols=121 Identities=20% Similarity=0.382 Sum_probs=99.4
Q ss_pred cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--------------CeEEEEe--------------c-CCCcEEEEE
Q 010037 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLRVF--------------S-HNNYVTSVA 435 (519)
Q Consensus 387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~--------------~~~~~~~--------------~-h~~~V~~v~ 435 (519)
.+..|+|+.|-|.+ .++.+-.+|.+.+||... +...... . -.+.|+.++
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 45789999999976 888888999999997531 1111111 0 235788899
Q ss_pred EeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~ 508 (519)
|+| |+.+||+.+.||.+||+|..+.+++. ....-+...+++|+|||++|++|+.|--|.||.+..++++...
T Consensus 298 FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 298 FSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred EcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 999 99999999999999999999988873 5556678899999999999999999999999999999887653
No 224
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.30 E-value=1.2e-09 Score=109.98 Aligned_cols=228 Identities=13% Similarity=0.155 Sum_probs=133.5
Q ss_pred EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeccc-Cee--eceeeccC
Q 010037 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQD 326 (519)
Q Consensus 251 asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iWd~~~-~~~--~~~~~~~~ 326 (519)
++...++.|.+|++.... . +...+.+. +.+....+.++|++++|++++ .++.|.+|++.. +.. ...... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g-~---l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~ 79 (330)
T PRK11028 6 IASPESQQIHVWNLNHEG-A---LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P 79 (330)
T ss_pred EEcCCCCCEEEEEECCCC-c---eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C
Confidence 444678999999995321 1 11222333 345677899999999887664 578999999963 322 111111 1
Q ss_pred CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EE
Q 010037 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS 404 (519)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~s 404 (519)
..+..+.+.++.. .++.... .++.+.+|+........+.+..+. +.....+++++|++ ++ ++
T Consensus 80 ~~p~~i~~~~~g~-~l~v~~~--------------~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 80 GSPTHISTDHQGR-FLFSASY--------------NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred CCceEEEECCCCC-EEEEEEc--------------CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence 1233333433322 1222211 123333333221111111222222 22346778899998 55 45
Q ss_pred EeCCCcEEEEECCCCeEEE-------EecCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCC--CcE--Ee-ecc---
Q 010037 405 SSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTD--- 468 (519)
Q Consensus 405 gs~Dg~V~lWdl~~~~~~~-------~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~--~~~--~~-~~~--- 468 (519)
...++.|.+||+.+...+. ..........++|+| ++++++++.. +++|.+|++.. ++. +. ...
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 5567999999998643221 122344567899999 8999888776 89999999973 332 21 111
Q ss_pred ---CCCceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037 469 ---IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG 501 (519)
Q Consensus 469 ---~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~ 501 (519)
.......+.++|+|++|+++.. ++.|.+|++..
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1122346889999999998854 78899999853
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=7.7e-11 Score=111.43 Aligned_cols=235 Identities=19% Similarity=0.360 Sum_probs=151.2
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC------------CCEEEEEEccCCC--EEE
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La 300 (519)
.+-+.++.|..+|.+||+|...|+|.++.-.+..+. ......+++.|. ..|+.+.|.++++ .++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 456667899999999999999999999987654431 111122344454 4689999998664 566
Q ss_pred EEeCCCcEEEEecccCeeec-eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 301 SGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 301 Sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
..+.|.+|++|.+....... ........ ....+..+ + ....+..+..+. ..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~l--------r-~p~~~~~~~~ve----------a~ 154 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSL--------R-LPVEGRHDLEVE----------AS 154 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccC---------CCCcccee--------e-ceeeccccceee----------ee
Confidence 67789999999997654322 11111100 00000000 0 000001111111 12
Q ss_pred ceeEe-eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEec--------CCCcEEEEEEeeCCCCEEEEEeC
Q 010037 380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 380 ~~~~~-~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~ 449 (519)
|.+.+ .+|.--|++|.++.++..+....|=.|.||++.-. +...... ...-|++..|+|...++|+-.+.
T Consensus 155 prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 22222 45888999999999995555567889999998743 2222221 23468999999988899999999
Q ss_pred CCeEEEEEcCCCcEE-------e----------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 450 Dg~V~iwd~~~~~~~-------~----------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.|+|++-|++...+- . +...-..|..+.|+++|+++++-.. -+|++||+.
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 999999999953211 0 1122345888999999999988665 479999983
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=8.5e-10 Score=114.70 Aligned_cols=180 Identities=19% Similarity=0.146 Sum_probs=127.2
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceE
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (519)
...|.+++..... .+.+..+...+...+|+|||++|+.+..+ ..|++|++.+++..
T Consensus 169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------- 227 (417)
T TIGR02800 169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------- 227 (417)
T ss_pred cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-------------
Confidence 3457777764222 13355677789999999999999887654 47889998765421
Q ss_pred EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCC-
Q 010037 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK- 409 (519)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg- 409 (519)
.+..+...+.+++|+|++ .|+ +.+.++
T Consensus 228 --------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 228 --------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred --------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 011123345568899998 554 444444
Q ss_pred -cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEE
Q 010037 410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (519)
Q Consensus 410 -~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (519)
.|.+||+.++.......+........|+| +++.|+..+. ++ .|.++|+.+++...+......+..+.|+|+|++|
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 58999999887655555555566789999 8888776654 33 6888898888766665566677889999999999
Q ss_pred EEEecCC---eEEEEECCCCeeeec
Q 010037 486 IVGTMTG---NCRFYDIKGMQIFDL 507 (519)
Q Consensus 486 ~sgs~dg---~v~iwdl~~~~l~~~ 507 (519)
+.++.++ .|.+||+.++....+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEEc
Confidence 9888776 799999987655443
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.7e-10 Score=123.05 Aligned_cols=197 Identities=18% Similarity=0.271 Sum_probs=150.2
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (519)
Q Consensus 287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (519)
|....+..+...++.+..+..+.+||...+.....+...... . ++....-...........++..+.+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~---~---------l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC---T---------LYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE---E---------EEeEEEEeccCcEEEEEeccccccE
Confidence 334555667778888888999999999877665554432221 1 1111111122234445566777788
Q ss_pred EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EecCCCcEEEEEEeeCCCCE
Q 010037 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNY 443 (519)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~h~~~V~~v~fsp~d~~~ 443 (519)
++|.+. ...++. .+.||.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+. .|.|+..|..++|.| + .
T Consensus 158 ivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~ 230 (967)
T KOG0974|consen 158 IVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--R 230 (967)
T ss_pred EEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--e
Confidence 888877 333444 689999999999999999 99999999999999999988775 567999999999998 4 9
Q ss_pred EEEEeCCCeEEEEEcCCCcEEeeccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 444 FISGSIDGKVRIWEVRRCQVVDYTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+++++.|-+.++|+.+..+.-.+..| ...|..++..++...+++++.||.+++|++.+.
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999997776555555555 456899999999999999999999999998754
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.7e-10 Score=115.69 Aligned_cols=222 Identities=18% Similarity=0.215 Sum_probs=140.8
Q ss_pred cCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEe--------eccCCce
Q 010037 282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKI 352 (519)
Q Consensus 282 ~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 352 (519)
.|...-+.|..+|||+|+ |||..--.|++||+....+...-......+....+..+ ...++.+ ....+..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD-~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc-hhhheEeecCceeeehhhcCee
Confidence 467788999999999976 66778889999999776554333222222222211111 1111111 1111111
Q ss_pred eeeeeec---------cCCCeeEEEeCCcccccc---ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC
Q 010037 353 DKTKSLR---------KSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID 419 (519)
Q Consensus 353 ~~~~~~~---------~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~ 419 (519)
..+..-. .+.+.-+......++++. +..+..+....+.++++..++.. +|++|+.+|.|-.||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 1111100 111111111112222221 23345556667899999999977 9999999999999999988
Q ss_pred eEEEEec-------CCC-----cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC--CceEEEEEeeCCCEE
Q 010037 420 RCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGG 485 (519)
Q Consensus 420 ~~~~~~~-------h~~-----~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~l 485 (519)
..+.++. |.+ .|+++.|+. +|-.+++|+.+|.|.|||+++.+++....|. -+|..+.|.+.+..-
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 7777664 333 399999997 7999999999999999999999988666654 568889998764332
Q ss_pred -EEEecCCeEEEEECCCCeee
Q 010037 486 -IVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 486 -~sgs~dg~v~iwdl~~~~l~ 505 (519)
++......++|||-.+|+.+
T Consensus 287 ~v~S~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTGKPM 307 (703)
T ss_pred eEEecchHHhhhcccccCCce
Confidence 22333456999999888754
No 229
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.26 E-value=3.6e-11 Score=119.36 Aligned_cols=212 Identities=12% Similarity=0.216 Sum_probs=137.1
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (519)
Q Consensus 282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (519)
.|...|.|+.|+.+...+.++++ ..+.+|.-.+.........++.......+ +......+++- .-..+..+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~~~~~~p~df~pt~~h-------~~~rs~~~g~~-~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSVEVAKLPDDFVPTDMH-------LGGRSSGGGKG-SDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEeccC-ceEEEeecccchhhhhhhCCcccCCcccc-------ccccccCCCCC-cceEEEEc
Confidence 36667789999988776666654 45555544333333333333322211111 00001111111 11112233
Q ss_pred CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV 439 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~ 439 (519)
.++...+.+.. ++.-....+|.+.|.+-.|+|+| -|++++.||.|++|. ++|-...++. ....|+|++|.|.
T Consensus 83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCC
Confidence 34444333221 23344567899999999999999 999999999999997 4454444443 6778999999995
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037 440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT 510 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~ 510 (519)
..+.+.+. .+.+.|=-+.. .++++|..|.+.|.++.|+|..+.+++|+.|-..+|||..+..++.-...
T Consensus 157 S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 157 SNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE 226 (737)
T ss_pred CCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence 55555544 35666666654 56779999999999999999999999999999999999988777654433
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.7e-10 Score=114.77 Aligned_cols=180 Identities=19% Similarity=0.175 Sum_probs=118.4
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEE
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (519)
..|.++|..... .+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------- 234 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------- 234 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence 457777764322 12345677889999999999999887643 359999987765311
Q ss_pred EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCCcE
Q 010037 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTV 411 (519)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~V 411 (519)
+....+.+...+|+|+| .|+ +.+.++..
T Consensus 235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 11112334578999999 554 66778876
Q ss_pred EEEE--CCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEE--cCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037 412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (519)
Q Consensus 412 ~lWd--l~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd--~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 486 (519)
.||. +.++...+...+...+....|+| +++.|+..+. +|...||. +.++...............+|+|||++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6665 55555433333555667889999 8888776554 45556665 45555443332333445689999999998
Q ss_pred EEecCC---eEEEEECCCCeeeecc
Q 010037 487 VGTMTG---NCRFYDIKGMQIFDLS 508 (519)
Q Consensus 487 sgs~dg---~v~iwdl~~~~l~~~~ 508 (519)
..+.++ .|.+||+.+++...+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEcc
Confidence 877654 5999999888765553
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.26 E-value=1.1e-09 Score=103.22 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=164.1
Q ss_pred ecccceeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEec
Q 010037 236 DRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV 313 (519)
Q Consensus 236 ~~~~~~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~ 313 (519)
+.+.-+.|+-+..++++ ...++.|.+|++....... .+.....++..++|||||+ .|.+..-|-.|.+|.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence 33444566666666554 6778899999987544322 2455677899999999995 5566667899999999
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce--------------------eeeeeeccCCCeeEEEeCCcc
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI--------------------DKTKSLRKSSDLTCVVLPPKV 373 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~s~~~~~~~~~~~~ 373 (519)
.+.+.. -++.+......+.|.++..-..+....+-... +....-..-.+..+.+|+.-.
T Consensus 122 ~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 122 NTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred ccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 876643 22333334455555554432222211111000 000001111122233333221
Q ss_pred ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE-----------------------------
Q 010037 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR----------------------------- 423 (519)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~----------------------------- 423 (519)
- ..+. ...-.-.+..++|+|.+ +|+.|+.|+.+||.+--+-+...
T Consensus 201 e----ykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 201 E----YKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred h----heee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 0 0011 11123578999999977 99999999999986522111100
Q ss_pred -------------------------------Eec-------CCCcEEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCcE
Q 010037 424 -------------------------------VFS-------HNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQV 463 (519)
Q Consensus 424 -------------------------------~~~-------h~~~V~~v~fsp~d~~~l~sgs~--Dg~V~iwd~~~~~~ 463 (519)
.++ ..-.+--++|++ |..|+++-.. -..+-+||++..++
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhh
Confidence 000 112356689999 8888888543 35799999999888
Q ss_pred EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT 510 (519)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~ 510 (519)
........+|.+..|+|....|+++.....+++|...+...+..+..
T Consensus 355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~ 401 (447)
T KOG4497|consen 355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK 401 (447)
T ss_pred hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC
Confidence 87777778999999999999999999888999999998777666543
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=2.4e-09 Score=108.58 Aligned_cols=245 Identities=15% Similarity=0.142 Sum_probs=136.4
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEecccC
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH 316 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iWd~~~~ 316 (519)
+..+.|+|||+++++.+.||.|.++|+...+. ..++.... ....+++++||++++++. ..+.+.++|..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 33468999999999999999999999986552 22333333 357899999999998775 5899999999999
Q ss_pred eeeceeeccCCCC-----ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 317 ERLDGFDVQDTDP-----SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 317 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
+.++.+....... ........+....+.+.... . +.+.+.+.... ..............
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----------~--~~I~vVdy~d~---~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----------T--GEIWVVDYSDP---KNLKVTTIKVGRFP 174 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----------T--TEEEEEETTTS---SCEEEEEEE--TTE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----------C--CeEEEEEeccc---cccceeeecccccc
Confidence 8887775432211 11111111212212111111 1 11111111110 00111122233455
Q ss_pred eEEEEcCCC-eEE-EEeCCCcEEEEECCCCeEEEEec--------------CC---------------------------
Q 010037 392 LDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS--------------HN--------------------------- 428 (519)
Q Consensus 392 ~~l~~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~--------------h~--------------------------- 428 (519)
.+..|+|++ +++ +...+..|-++|..+++.+..+. |.
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 677888887 443 34556677777777665544321 11
Q ss_pred --------------CcEEEEEEeeCCCCEEEEE----eCCCeEEEEEcCCCcEEeeccC--CCceEEEEEeeCCCEEEEE
Q 010037 429 --------------NYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPDGKGGIVG 488 (519)
Q Consensus 429 --------------~~V~~v~fsp~d~~~l~sg----s~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spdg~~l~sg 488 (519)
+.-.-+..+| +++++.+. ...++|.++|.++.+++..... ...+..+.|++||+.+.++
T Consensus 255 d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp TTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred hhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 1113355678 88888887 4457999999999987754332 2348999999999988776
Q ss_pred ecCC--eEEEEECCCCeeeec
Q 010037 489 TMTG--NCRFYDIKGMQIFDL 507 (519)
Q Consensus 489 s~dg--~v~iwdl~~~~l~~~ 507 (519)
..++ .|.+||..+.++...
T Consensus 334 ~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 334 VWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EE--TTEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEECCCcEEEEE
Confidence 6543 699999999987653
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=115.05 Aligned_cols=267 Identities=17% Similarity=0.220 Sum_probs=170.2
Q ss_pred CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCC
Q 010037 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDG 306 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg 306 (519)
..+..|...++.+.|+..|..|++|+.|.+|.+|++......+. -..+|...|...+|-| +.+-|++++.||
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceeccccC
Confidence 34666778888899999999999999999999999987665443 1357888888888888 345788888999
Q ss_pred cEEEEecccCeee---ceeeccCCCCceEEEeecCCCCeEEeeccC---------Cce--------------eeee----
Q 010037 307 TVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDK---------EKI--------------DKTK---- 356 (519)
Q Consensus 307 ~I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------------~~~~---- 356 (519)
.|++=.+...... ..+..+...+..++..+.....+....-+. ... ..+.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 9888776433221 122233333333443333332222211110 000 0000
Q ss_pred -------eeccCCCeeEEEeCCcccccc--ccceeEee------ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--
Q 010037 357 -------SLRKSSDLTCVVLPPKVFRLL--EKPLHEFQ------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-- 418 (519)
Q Consensus 357 -------~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~------~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~-- 418 (519)
...++.+-...+++.+..... ..++..+. .....|+|++|+.++ -|+++-.|-.|+++.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 011111122222222221111 01122222 234579999999877 888888898999995332
Q ss_pred C----------eEEEE-ec-C--CCcEEEEEE-eeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCC
Q 010037 419 D----------RCLRV-FS-H--NNYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDG 482 (519)
Q Consensus 419 ~----------~~~~~-~~-h--~~~V~~v~f-sp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg 482 (519)
+ ..++. ++ | ...|..+.| -| ...|+++||.-|.|.||+-.+++++. +.+-...|+|+.=+|--
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 11222 33 3 345777876 45 78999999999999999999999985 44445589999999999
Q ss_pred CEEEEEecCCeEEEEECCCC
Q 010037 483 KGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 483 ~~l~sgs~dg~v~iwdl~~~ 502 (519)
..||+++.|..|+||...+.
T Consensus 449 PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred chhhccCCccceeeecCCcc
Confidence 99999999999999988543
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=1.5e-11 Score=120.23 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=146.5
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
..|..+.|-.+..++|++. ...++|||-.... +.+ ++.| ..|..|.|-|.--+|++++..|.++.-|+.+
T Consensus 171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-----lHC---lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-----LHC---LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred hhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----Eee---hhhc-CchhhhcccchhheeeecccCCceEEEeech
Confidence 4555678888888888874 5678999866322 111 2223 4688999999988999999999999999998
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
|+.+..+ ..-.+.+..|+
T Consensus 241 GklVa~~--------------------------------------------------------------~t~~G~~~vm~ 258 (545)
T KOG1272|consen 241 GKLVASI--------------------------------------------------------------RTGAGRTDVMK 258 (545)
T ss_pred hhhhHHH--------------------------------------------------------------HccCCccchhh
Confidence 8865443 22345677778
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCce
Q 010037 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (519)
Q Consensus 396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 473 (519)
-+|-+ .+-+|...|+|.+|.-...+++..+ .|.++|.+|++.| +|+|++|.+.|..|+|||+++...+.......+.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a 337 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA 337 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCc
Confidence 88877 8899999999999999988877554 5999999999999 9999999999999999999987755433335677
Q ss_pred EEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 474 SAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 474 ~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
..+++|.-| +++.+....|.||.
T Consensus 338 ~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 SNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ccccccccc--ceeeecCCeeeeeh
Confidence 888898876 34445556899994
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.7e-09 Score=110.41 Aligned_cols=199 Identities=22% Similarity=0.219 Sum_probs=126.6
Q ss_pred ecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC--cEE
Q 010037 236 DRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--TVR 309 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~I~ 309 (519)
..+....|+|+|+.|+..+.. ..|.+|++..+.... +....+.+....|+|||+.|+ +...+| .|.
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 344567899999999876543 368888887543221 122233455689999999887 444555 466
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+||+.++... .+..+..
T Consensus 271 ~~d~~~~~~~---------------------------------------------------------------~lt~~~~ 287 (430)
T PRK00178 271 VMDLASRQLS---------------------------------------------------------------RVTNHPA 287 (430)
T ss_pred EEECCCCCeE---------------------------------------------------------------EcccCCC
Confidence 6677654321 1111223
Q ss_pred CeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--eEEEEEcCCCc
Q 010037 390 EVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQ 462 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~iwd~~~~~ 462 (519)
......|+|+| .|+..+ .++ .|.++++.+++...............|+| ++++++..+.+ + .|.+||+.+++
T Consensus 288 ~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 288 IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCC
Confidence 34556899998 555444 333 57778888877554433333445678999 88888776643 3 58899999887
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeec
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDL 507 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~ 507 (519)
...+... .......|+|||+.|+..+.+ ..+.++++.++....+
T Consensus 367 ~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 367 VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred EEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 6544332 223356899999998877654 3477888876555444
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.3e-10 Score=109.00 Aligned_cols=179 Identities=12% Similarity=0.202 Sum_probs=138.0
Q ss_pred eecCCCC-eEEeeecC--CeEEEeeCCccccccccccccceeecCCC--CEEEEEEccC--CCEEEEEeCCCcEEEEecc
Q 010037 242 TLKPGDH-ELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLD--GQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 242 ~~sp~g~-~lasgs~d--g~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspd--g~~LaSgs~Dg~I~iWd~~ 314 (519)
.-+|... .+|+|+.. ..++||++....+.++.........+-.- .++++.|-+. ...||+++.-+.||+||..
T Consensus 155 r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 155 RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 3344444 45568888 88999999877544443322222222223 3567889886 7899999999999999987
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
.+. .|+..+.--..+|+++
T Consensus 235 ~qR-------------------------------------------------------------RPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 235 HQR-------------------------------------------------------------RPVAQFDFLENPISST 253 (412)
T ss_pred ccC-------------------------------------------------------------cceeEeccccCcceee
Confidence 554 2334444456789999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 471 (519)
...|.+ .+++|..-+.+..+|++.++.+.. +. ..+.|++|..+| ...++++++.|..|||+|+.+.+++.......
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 999999 999999999999999999998877 44 788999999999 88999999999999999999988887666677
Q ss_pred ceEEEEEeeCC
Q 010037 472 IVSAVCYCPDG 482 (519)
Q Consensus 472 ~V~~v~~spdg 482 (519)
.++.|-+.++-
T Consensus 333 ~lt~il~~~~~ 343 (412)
T KOG3881|consen 333 RLTFILLRDDV 343 (412)
T ss_pred cccEEEecCCc
Confidence 78888776643
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.9e-09 Score=102.26 Aligned_cols=225 Identities=19% Similarity=0.317 Sum_probs=143.2
Q ss_pred CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~ 309 (519)
.++++.+.++....-|...-+++.+.|.+++||-..+....-..+ ......++.++.+.++...|+.|-.+|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 467788888888888888899999999999999765433211111 123457889999999988999998899988
Q ss_pred EEeccc----CeeeceeeccCCCCceEEEeecCC--------CCeE-EeeccCCceeeeeeeccC----CCeeEEEeCCc
Q 010037 310 VWKVIE----HERLDGFDVQDTDPSCLYFTINHL--------SQLI-PIDVDKEKIDKTKSLRKS----SDLTCVVLPPK 372 (519)
Q Consensus 310 iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~ 372 (519)
-+.+.. ....+.+..+...+..+.+..... ..+. ...-...+.......... -+..+.....+
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 876532 222222222332222222221111 0000 000011111111111100 01111111111
Q ss_pred cccc--------cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEecCCCcEEEEEEeeCCC
Q 010037 373 VFRL--------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDD 441 (519)
Q Consensus 373 ~~~~--------~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~h~~~V~~v~fsp~d~ 441 (519)
.+.+ .-.++.++.+|.+.+.+++|.|.. .|.+|..|..|.+||+..+ .....+.|...|..++.-+ .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 1111 235678899999999999999987 9999999999999998654 4445556999999999988 78
Q ss_pred CEEEEEeCCCeEEEEEcCC
Q 010037 442 NYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 442 ~~l~sgs~Dg~V~iwd~~~ 460 (519)
..+++++.||.|.+||.+.
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8999999999999999764
No 238
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=6e-11 Score=118.08 Aligned_cols=214 Identities=14% Similarity=0.207 Sum_probs=153.8
Q ss_pred cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~ 307 (519)
+..+++|...+..++--.+.+-++++++|++|++|.++....+..+..+.-++++|+.+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345677778887766556777888999999999999987766666666777889999999999999999998876 889
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|++||.--+..+..+.-.. -.+.
T Consensus 806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a 828 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA 828 (1034)
T ss_pred ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence 9999986665433221100 0112
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
.+.|.|+.--... .++.++...+|+++|.+.......++ .+..+.+++..| .|+.++++-..|.|.+.|.++
T Consensus 829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence 2334444321112 44555889999999999987766654 346789999999 999999999999999999999
Q ss_pred CcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEE-EECCCC
Q 010037 461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKGM 502 (519)
Q Consensus 461 ~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i-wdl~~~ 502 (519)
++++. |....-....++- |..+.|+....|.++.+ |...++
T Consensus 908 G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 908 GKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence 99884 5554444444332 55556666666777777 765544
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.8e-09 Score=109.08 Aligned_cols=199 Identities=20% Similarity=0.203 Sum_probs=121.8
Q ss_pred ecccceeecCCCCeEEeeecC-C--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCc--EE
Q 010037 236 DRHGSATLKPGDHELTLGQRM-R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT--VR 309 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~d-g--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~--I~ 309 (519)
..+....|+|||+.|+..+.. + .|.+|++..+.... +....+......|+|||+.|+. .+.+|. |.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 344567999999999876543 3 58888876543211 1111223346799999997765 556665 55
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
+||+.+++. ..+..+..
T Consensus 290 ~~dl~tg~~---------------------------------------------------------------~~lt~~~~ 306 (448)
T PRK04792 290 VVDIATKAL---------------------------------------------------------------TRITRHRA 306 (448)
T ss_pred EEECCCCCe---------------------------------------------------------------EECccCCC
Confidence 556554431 11122233
Q ss_pred CeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCc
Q 010037 390 EVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQ 462 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~ 462 (519)
.....+|+|++ .|+..+ .++ .|.++|+.+++..............+|+| ++++|+..+. ++ .|.++|+.+++
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC
Confidence 45567899999 555444 333 46677887777654433333445679999 8888876654 34 46667888877
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecC-C--eEEEEECCCCeeeec
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKGMQIFDL 507 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d-g--~v~iwdl~~~~l~~~ 507 (519)
...+.... ......|+|||+.|+..+.+ | .++++++.+.....+
T Consensus 386 ~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 386 MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred eEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 65443321 22345899999988876654 3 377778765544444
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=3.5e-10 Score=120.78 Aligned_cols=149 Identities=23% Similarity=0.409 Sum_probs=124.9
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
+.++++.-++++|+.-+.|.+|+....++.. .+.+|.+.|..+.|+.||++++++++|.++|+|++.+.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 4578888899999999999999987333221 478999999999999999999999999999999998876321
Q ss_pred eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (519)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 400 (519)
...-+|+..|..+.+.|+
T Consensus 212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 212 -------------------------------------------------------------CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence 123579999999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEec-C-CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
+++|++.|.+.++|+.+..+.. ++. | ...+..++..+ +...++|++.|+.+++|++..
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 9999999999999976654443 554 4 45789999999 888999999999999999865
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.16 E-value=7.9e-10 Score=104.08 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=131.7
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEecccCeee
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~I~iWd~~~~~~~ 319 (519)
..|+|+|+++|+.+.. ++.|.|...-. ..|.+.. -+.|.-+.|..|.-+++. ...|+.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 4799999999999876 78888876322 2222221 356778899988876554 467889999998655421
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
..++....++..++|+|+
T Consensus 85 --------------------------------------------------------------ckIdeg~agls~~~WSPd 102 (447)
T KOG4497|consen 85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD 102 (447)
T ss_pred --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence 223445677889999999
Q ss_pred C--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------------------------
Q 010037 400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-------------------------- 451 (519)
Q Consensus 400 ~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-------------------------- 451 (519)
| .|.+...|-.|.+|.+.+.++...--....+..++|+| ++++.+..+.-.
T Consensus 103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 9 67788889999999999988766554455678899999 888887765421
Q ss_pred ----------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 452 ----------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.+.+||---.-.+-.....-.+..++|+|.+++|++|+.|+.+||.+--+-
T Consensus 182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 122222110001101112245788999999999999999999998775443
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3e-10 Score=111.95 Aligned_cols=209 Identities=20% Similarity=0.241 Sum_probs=144.0
Q ss_pred ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceee
Q 010037 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (519)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (519)
....|..|.+.|..|.|+..|..|+||+.|..|.+||+..+.....+.... ..+....|.+......+...
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~-------- 205 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS-------- 205 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec--------
Confidence 334578899999999999999999999999999999998887655543322 22222223333222211111
Q ss_pred eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec----CC
Q 010037 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HN 428 (519)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~ 428 (519)
+.++.+.+-........ +....+..|.+.|.-++.-|.. .|++++.|+.|.-.|++++.+...+. +.
T Consensus 206 ------s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 206 ------SRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred ------cccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 11222211111100000 1123456799999999999988 99999999999999999886655542 33
Q ss_pred C---cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE------E-eec------cCCCceEEEEEeeCCCEEEEEecCC
Q 010037 429 N---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV------V-DYT------DIREIVSAVCYCPDGKGGIVGTMTG 492 (519)
Q Consensus 429 ~---~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~------~-~~~------~~~~~V~~v~~spdg~~l~sgs~dg 492 (519)
. ...+|+.+|.+.++|++|+.|..+++||.+.-.. + ++. ...-.|++++|+.++.-|+++-.|-
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence 3 6789999997788999999999999999876321 1 111 2344699999999888888888888
Q ss_pred eEEEEEC
Q 010037 493 NCRFYDI 499 (519)
Q Consensus 493 ~v~iwdl 499 (519)
.|+++.-
T Consensus 359 ~IYLF~~ 365 (559)
T KOG1334|consen 359 DIYLFNK 365 (559)
T ss_pred ceEEecc
Confidence 9999943
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=8.4e-09 Score=107.12 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=82.3
Q ss_pred CeeEEEEcCCC-eEEEEe-CCCcEEEEE--CCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCC
Q 010037 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQ--VGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR 460 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs-~Dg~V~lWd--l~~-~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~ 460 (519)
.....+|+|+| .|+..+ .++...||. +.. +.....+ .+...+....|+| +++.|+..+.+ ..|.+||+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 34567999999 666554 466555554 432 2223333 3455678899999 89888766543 4799999999
Q ss_pred CcEEeeccCCCceEEEEEeeCCCEEEEEec---CCeEEEEECCCCeeeecc
Q 010037 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~---dg~v~iwdl~~~~l~~~~ 508 (519)
++...+......+....|+|||+.|+.... ...|+++|+.+++...+.
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 987766554456778999999998876443 346889999888766554
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.3e-09 Score=99.32 Aligned_cols=205 Identities=17% Similarity=0.235 Sum_probs=134.9
Q ss_pred ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccc-----ccccccee--ecCCCCEEEEEEccCCCEEEEEeC-CC
Q 010037 236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG 306 (519)
Q Consensus 236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~LaSgs~-Dg 306 (519)
..+.|++|.|.+ +-|++|+..| |.+|........-. .....+.+ .+| .+|++|.|.+||..|++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 345578999965 5666776655 99998764221111 11122223 345 68999999999999999885 67
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|.|||..++..+.-. ..
T Consensus 219 si~iWdpdtg~~~pL~--------------------------------------------------------------~~ 236 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLI--------------------------------------------------------------PK 236 (445)
T ss_pred eEEEEcCCCCCccccc--------------------------------------------------------------cc
Confidence 8999999888743211 11
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--- 461 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl-~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--- 461 (519)
..+.+.-+.|+|++ +|+.++-|+..++|+. ++-.+.+-.-..+.|+..+|+| .|.+|+..+. |.-++|.+.-.
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED 314 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence 24567889999999 9999999999999954 4444545455667999999999 6766554432 33445544210
Q ss_pred ----------cE--E-ee---------ccCCCceEEEEEeeCCCEEEEEecC--------CeEEEEECCCCeeee
Q 010037 462 ----------QV--V-DY---------TDIREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQIFD 506 (519)
Q Consensus 462 ----------~~--~-~~---------~~~~~~V~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~l~~ 506 (519)
.. + .+ .-..+.+.+++|.|.|.+||+.-.. +.|.+||.+.-..+.
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 00 0 11 1124678899999999999986543 336677776544433
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=1.6e-10 Score=128.56 Aligned_cols=196 Identities=19% Similarity=0.343 Sum_probs=150.4
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
++.+.+.+.++.-||...+-++|+.||.|++|.+..+..... .+ .+-+..|+.+.|+.+|+.+..+..||.+.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceee
Confidence 444556666788999999999999999999999986554322 11 122378999999999999999999999999
Q ss_pred EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
|.+.. ++....+.|...
T Consensus 2278 ~q~~p---------------------------------------------------------------k~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2278 WQASP---------------------------------------------------------------KPYTSWQCHNKA 2294 (2439)
T ss_pred cccCC---------------------------------------------------------------cceeccccCCcc
Confidence 98741 234445668888
Q ss_pred eeEEEEcCCCeEEEE---eCCCcEEEEECCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 391 VLDLSWSKNGFLLSS---SADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 391 V~~l~~sp~~~L~sg---s~Dg~V~lWdl~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
..++.|-.. .++++ +.++.+.+||..-.. .+....|...++++++-| ..++|++|+.+|.|++||++..++.+
T Consensus 2295 ~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2295 LSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred ccceeeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHH
Confidence 888888763 45554 367899999975432 222245999999999999 89999999999999999999988774
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
.... +. ...++++|+..|.++||++....++.
T Consensus 2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred Hhhh--------hh-hhheeeccCcccceEEEEccccchhh
Confidence 3222 44 55689999999999999998765543
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=2e-08 Score=104.96 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=119.7
Q ss_pred eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEEE
Q 010037 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (519)
Q Consensus 258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 334 (519)
+|.++|..... .+.+..+...+....|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46666765322 12345677789999999999999876643 358888886654211
Q ss_pred eecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCC--c
Q 010037 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T 410 (519)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg--~ 410 (519)
+....+.+...+|+|+| .|+ +.+.++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 00111223457899999 555 555555 5
Q ss_pred EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEE
Q 010037 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (519)
Q Consensus 411 V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~s 487 (519)
|.+||+.++.......+........|+| +++.++..+. +| .|+++|+.+++...+...........|+|||+.|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887665555666677889999 8887766553 33 688888888776544333333456789999999987
Q ss_pred EecC-C--eEEEEECCCCeeeec
Q 010037 488 GTMT-G--NCRFYDIKGMQIFDL 507 (519)
Q Consensus 488 gs~d-g--~v~iwdl~~~~l~~~ 507 (519)
.+.+ + .|.+||+.+++...+
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEc
Confidence 7653 3 488999988766554
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=1.5e-07 Score=93.66 Aligned_cols=244 Identities=11% Similarity=0.047 Sum_probs=145.4
Q ss_pred eecCCCCeEEeeec----------CCeEEEeeCCcccccccccccc-c-eeecCCCCEEEEEEccCCCEEEEEe-C-CCc
Q 010037 242 TLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTG-Q-EFLAHEGSILTMKFSLDGQYLASGG-E-DGT 307 (519)
Q Consensus 242 ~~sp~g~~lasgs~----------dg~I~vw~~~~~~~~~~~~~~~-~-~l~~H~~~I~~l~fspdg~~LaSgs-~-Dg~ 307 (519)
.++||++.|+++.. +..|.|||....+.... +... . .+. .-.....++++|||++|+... . +..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-IELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-EccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCE
Confidence 38999998877554 78999999986553211 1100 0 000 112234789999999998776 3 689
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.+.|+.+++.+..+..+. ...++........+.+ .+..... +....++....-...++.....++.
T Consensus 130 V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~--~Dg~~~~----v~~d~~g~~~~~~~~vf~~~~~~v~----- 196 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHC--RDGSLAK----VGYGTKGNPKIKPTEVFHPEDEYLI----- 196 (352)
T ss_pred EEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEe--ecCceEE----EEecCCCceEEeeeeeecCCccccc-----
Confidence 9999999999988887633 2222222222111111 1111100 0011111111111111100000000
Q ss_pred CCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCC-----CeEEEEec--------CCCcEEEEEEeeCCCCEEEEEe----
Q 010037 388 SSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS---- 448 (519)
Q Consensus 388 ~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~-----~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs---- 448 (519)
..+ .|.+ +| ++..... |+|.+.|+.. ......+. ....+.-++++| +++.++...
T Consensus 197 ~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~ 270 (352)
T TIGR02658 197 NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRA 270 (352)
T ss_pred cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCc
Confidence 111 3455 66 5555555 9999999644 33333332 233445599999 777666642
Q ss_pred ------CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEEe-cCCeEEEEECCCCeeee
Q 010037 449 ------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 449 ------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sgs-~dg~v~iwdl~~~~l~~ 506 (519)
..+.|.++|..+++++........+..++++|||+ +|++.. .++.|.++|+.+++.+.
T Consensus 271 ~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred cccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 12479999999999998777788999999999999 777666 57889999999987654
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=7.4e-09 Score=104.77 Aligned_cols=198 Identities=15% Similarity=0.240 Sum_probs=144.3
Q ss_pred cCCCEEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeecc-----------CCceeeeeeeccC
Q 010037 294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVD-----------KEKIDKTKSLRKS 361 (519)
Q Consensus 294 pdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~s 361 (519)
|-..|+|....||.++||+...++....+.... ...+|.+.... ..+... .........+.+.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 456799999999999999999998877764322 23334333322 111111 1112233445566
Q ss_pred CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV 439 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~ 439 (519)
..+.+..++.....+.. ...-..|.+.|.++.++.+- .|.+++.|+.+..|+....+.++.+. ....+.+++.+|
T Consensus 78 ~~g~v~~ys~~~g~it~--~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITA--KLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP- 154 (541)
T ss_pred CCccEEEEEecCCeEEE--EEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-
Confidence 66677776665433321 11224699999999998876 99999999999999999999998887 677899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeC-----CCEEEEE-ecCCeEEEEECCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-----GKGGIVG-TMTGNCRFYDIKG 501 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-----g~~l~sg-s~dg~v~iwdl~~ 501 (519)
|+..+++++ ++|++||+++++++ .+.+|.++|.+++|.-+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999886 68999999999988 68999999999999887 6666553 4455577776643
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.4e-08 Score=104.43 Aligned_cols=178 Identities=20% Similarity=0.183 Sum_probs=116.7
Q ss_pred eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEecccCeeeceeeccCCCCceEEE
Q 010037 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (519)
Q Consensus 258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 334 (519)
.|.++|...... +.+..+...+....|+|||+.|+..+. ++ .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------- 256 (448)
T PRK04792 199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------- 256 (448)
T ss_pred EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 566666653321 234456778899999999998887654 33 47777776554210
Q ss_pred eecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCCc--
Q 010037 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT-- 410 (519)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~-- 410 (519)
+..+. +.....+|+|+| .|+ +.+.++.
T Consensus 257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 00111 122357899999 554 5566665
Q ss_pred EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEE
Q 010037 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (519)
Q Consensus 411 V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~s 487 (519)
|.+||+.+++......+.......+|+| +++.|+..+. ++ .|.++|+.+++...+..........+|+|||++|+.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 7788998887665555666678899999 8887766553 33 577778887776554333333456799999999887
Q ss_pred EecC-C--eEEEEECCCCeeeec
Q 010037 488 GTMT-G--NCRFYDIKGMQIFDL 507 (519)
Q Consensus 488 gs~d-g--~v~iwdl~~~~l~~~ 507 (519)
.+.+ + .|.++|+.+++...+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQVL 389 (448)
T ss_pred EEecCCceEEEEEECCCCCeEEc
Confidence 6653 3 466678888776544
No 250
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.05 E-value=7.3e-09 Score=112.33 Aligned_cols=211 Identities=15% Similarity=0.254 Sum_probs=133.5
Q ss_pred eeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee-------eceeeccCCCCceEEEeecCCCCeEEeeccCC
Q 010037 279 EFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE 350 (519)
Q Consensus 279 ~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (519)
.+..|...|..++.++.. .+++||+.||+|++|+...-.. ..++........++.+..+... ++
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~--~A------ 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ--FA------ 1114 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe--EE------
Confidence 355688888888887754 8999999999999999854321 1111111222222222222211 11
Q ss_pred ceeeeeeeccCCCeeEEEeCCccccc---cccceeEeeccC-CCeeEE-EEcCC--C-eEEEEeCCCcEEEEECCCCeEE
Q 010037 351 KIDKTKSLRKSSDLTCVVLPPKVFRL---LEKPLHEFQGHS-SEVLDL-SWSKN--G-FLLSSSADKTVRLWQVGIDRCL 422 (519)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~~h~-~~V~~l-~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~ 422 (519)
.++.++.+.+........ ..........+. +.+.+| +|... . .|+.+..-+.|..||+++...+
T Consensus 1115 --------v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1115 --------VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred --------EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 124444444444333211 111112222222 223333 33332 2 7788888999999999987766
Q ss_pred EEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCC---CEEEEEe--cCC
Q 010037 423 RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDG---KGGIVGT--MTG 492 (519)
Q Consensus 423 ~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg---~~l~sgs--~dg 492 (519)
..++ ..+.|++++.+| .++++++|+..|.+.+||++-+..+. ...+..+++.++.+|-. ...++++ ..+
T Consensus 1187 w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 6554 457899999999 89999999999999999999888773 33455788888888743 3455544 466
Q ss_pred eEEEEECCCCeeee
Q 010037 493 NCRFYDIKGMQIFD 506 (519)
Q Consensus 493 ~v~iwdl~~~~l~~ 506 (519)
-|.+|++.+|...+
T Consensus 1266 evs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQT 1279 (1431)
T ss_pred ceeeeecccCcceE
Confidence 79999999886543
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=2.7e-09 Score=99.23 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=137.8
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
++.|++.+..++++..+|.+.+-+.... .+...|..++|+-.++..+|+. +.+.+.+||.|+.+..||++..+.
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 3678999999999999999985544422 3445567899999999999987 456899999999999999863220
Q ss_pred eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
+ + .+..+-|...|.+|.-+|
T Consensus 201 ---~---------i------------------------------------------------~~n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 201 ---F---------I------------------------------------------------WHNSKVHTSGVVSIYSSP 220 (339)
T ss_pred ---e---------e------------------------------------------------eecceeeecceEEEecCC
Confidence 0 0 111245888999999888
Q ss_pred CC--eEEEEeCCCcEEEEECC-CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE----E--eeccC
Q 010037 399 NG--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----V--DYTDI 469 (519)
Q Consensus 399 ~~--~L~sgs~Dg~V~lWdl~-~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~----~--~~~~~ 469 (519)
.. +++||+.|-.|++||.+ -++++..-...+.|+.+.++|.....++.++.-.-.+|-+...+.. + ....|
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc
Confidence 65 99999999999999999 5788877777899999999995443444444333466666655321 1 24556
Q ss_pred CCceEEEEEeeCCCEEEEEe-cCCeEE-EEE
Q 010037 470 REIVSAVCYCPDGKGGIVGT-MTGNCR-FYD 498 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs-~dg~v~-iwd 498 (519)
...+..-.|......|++++ .|..++ +|-
T Consensus 301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cceeeccccccccceeeeeeccccceeeeee
Confidence 66666666644445677754 355533 553
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.01 E-value=1.7e-07 Score=95.03 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=125.8
Q ss_pred EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCC
Q 010037 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (519)
Q Consensus 250 lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 329 (519)
+++-..+|.|.|.|....+. ...+......-..+.|+|||+++++++.||.|.++|+.+.+.+..+..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 34566789999999874332 223443333334578999999999999999999999998886554432
Q ss_pred ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE-eC
Q 010037 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SA 407 (519)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg-s~ 407 (519)
.....+++++++| +++++ ..
T Consensus 77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence 2235678999999 66654 57
Q ss_pred CCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEE--eeccCCCceEEE
Q 010037 408 DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV--DYTDIREIVSAV 476 (519)
Q Consensus 408 Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~--~~~~~~~~V~~v 476 (519)
.+.|.++|.++.++++.+. ....+..|..+| ....++..-. -+.|.+-|....+.+ ............
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 8999999999999998875 234678888888 6665555544 588888898775433 455556677889
Q ss_pred EEeeCCCEEEEE-ecCCeEEEEECCCCeeee
Q 010037 477 CYCPDGKGGIVG-TMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 477 ~~spdg~~l~sg-s~dg~v~iwdl~~~~l~~ 506 (519)
.|+|+|++++++ .....|-++|+.++++..
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ccCcccceeeecccccceeEEEeeccceEEE
Confidence 999999987765 456789999999987654
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=2.5e-08 Score=92.96 Aligned_cols=232 Identities=14% Similarity=0.185 Sum_probs=140.8
Q ss_pred cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEecccCeeeceeeccCCCCc
Q 010037 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330 (519)
Q Consensus 255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 330 (519)
..|.+.++++...+... .... ..--+..+..|.|+. +|. .|+-+-.+|.|.++..........+......
T Consensus 44 R~Gkl~Lys~~d~~~~~--l~~~--q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-- 117 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP--LDTL--QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-- 117 (339)
T ss_pred eccceEEEeecccccCc--ccee--eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--
Confidence 45778888887544321 1111 122345677888865 555 5677778899999987655433333221110
Q ss_pred eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCC
Q 010037 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (519)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~D 408 (519)
..... ..+.+.+...+.. .+.....+.+......... -+.++.+++|.-.++..+|+... .+++|+.|
T Consensus 118 --ki~~~---~~lslD~~~~~~~---i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 118 --KISVV---EALSLDISTSGTK---IFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred --hhhhe---eeeEEEeeccCce---EEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCC
Confidence 00000 0111111111111 1111111111111111111 13355788999999999998766 89999999
Q ss_pred CcEEEEECCC-CeEEEE--ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEeeCC--
Q 010037 409 KTVRLWQVGI-DRCLRV--FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDG-- 482 (519)
Q Consensus 409 g~V~lWdl~~-~~~~~~--~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg-- 482 (519)
+.+..||++. ++.+.. ..|...|.+|.-+|..+.++++|+.|..|++||.|+ ++++......+.|..+.++|.-
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH 267 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh
Confidence 9999999993 333333 238999999999998899999999999999999995 6777777777999999999943
Q ss_pred CEEEEEecCCeEEEEECCCCe
Q 010037 483 KGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 483 ~~l~sgs~dg~v~iwdl~~~~ 503 (519)
..|+++-..| .+|-+.+.+.
T Consensus 268 ~lL~~CMh~G-~ki~~~~~~~ 287 (339)
T KOG0280|consen 268 RLLAACMHNG-AKILDSSDKV 287 (339)
T ss_pred HHHHHHHhcC-ceEEEecccc
Confidence 2333333333 4566655443
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=8.9e-07 Score=89.59 Aligned_cols=250 Identities=13% Similarity=0.220 Sum_probs=148.8
Q ss_pred ceeecCCCCeEEeeec----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecc
Q 010037 240 SATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI 314 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~ 314 (519)
-++++|++++|.+... .+.|..|.+......+..+ ............++++|++++|+++.. +|.|.++++.
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3889999999988766 5799999887642222211 122223345567999999999998874 8999999997
Q ss_pred cC-eeeceeec-------------cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037 315 EH-ERLDGFDV-------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (519)
Q Consensus 315 ~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (519)
.. ........ ....+.++.+.++. ..++..+.....+.. +.++.....+..
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~------------~~~~~~~~~l~~-- 182 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYV------------YDIDDDTGKLTP-- 182 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEE------------EEE-TTS-TEEE--
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEE------------EEEeCCCceEEE--
Confidence 73 33222110 01112233333332 223333333332221 112221111111
Q ss_pred eeEee-ccCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECC--CCeE--EEEec-------CCCcEEEEEEeeCCCCEEEE
Q 010037 381 LHEFQ-GHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 381 ~~~~~-~h~~~V~~l~~sp~~-~L-~sgs~Dg~V~lWdl~--~~~~--~~~~~-------h~~~V~~v~fsp~d~~~l~s 446 (519)
...+. ........++|+|++ ++ ++.-.+++|.++++. .+.. +..+. .......|+++| ++++|++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyv 261 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYV 261 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEE
Confidence 12222 244568899999998 44 556678899999988 4432 22222 123688999999 8988777
Q ss_pred Ee-CCCeEEEEEcC--CCcEE--ee-ccCCCceEEEEEeeCCCEEEEEec-CCeEEEEEC--CCCeeeecc
Q 010037 447 GS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDI--KGMQIFDLS 508 (519)
Q Consensus 447 gs-~Dg~V~iwd~~--~~~~~--~~-~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl--~~~~l~~~~ 508 (519)
+. ..+.|.+|++. ++++. .. .........++++|+|++|+++.. ++.|.+|++ .+|++....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 66 46789999994 34433 22 223455899999999999998874 568999865 678776554
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.9e-07 Score=94.21 Aligned_cols=243 Identities=14% Similarity=0.199 Sum_probs=145.9
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC--CEEEE-----EeCCCcEEEEec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLAS-----GGEDGTVRVWKV 313 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~LaS-----gs~Dg~I~iWd~ 313 (519)
..|++|..+.|- -..+.+++|+........ -.-|...|..+.+||.+ ..+|+ .|.-+.|+||.+
T Consensus 131 ~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 131 PQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence 456666654433 235679999987633221 23467889999999964 34544 456678999998
Q ss_pred ccCeeeceeec---cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 314 IEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 314 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
.....-..+.. -......+.|.......++....+-++... .--+...+.++... +.....--...++
T Consensus 202 ~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~----SYYGEq~Lyll~t~-----g~s~~V~L~k~GP 272 (566)
T KOG2315|consen 202 PEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA----SYYGEQTLYLLATQ-----GESVSVPLLKEGP 272 (566)
T ss_pred ccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc----cccccceEEEEEec-----CceEEEecCCCCC
Confidence 63322111110 111112233333333333333222221100 00011122222221 0111111124789
Q ss_pred eeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCcEE
Q 010037 391 VLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVV 464 (519)
Q Consensus 391 V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~~~~ 464 (519)
|.++.|+|++ -++-|-+-.++.|+|++.. ++..| ..++=+++-|+| .|++++.++. -|.+-|||+.+.+++
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhc
Confidence 9999999999 4455668889999998754 44444 356678899999 8999888775 478999999998777
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeee
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIF 505 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~ 505 (519)
......+ -+-+.|+|||++++|++. |+.++||+..+..+.
T Consensus 350 ~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 350 AKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 4433333 355799999999999886 688999999765543
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2.6e-07 Score=95.27 Aligned_cols=261 Identities=13% Similarity=0.167 Sum_probs=161.9
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCcccc--------ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i 310 (519)
.|++|+....++|+|+.||.++|-.+..... ..+++.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.+
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 4689999999999999999999998864322 23456677999999999999999999999999999999999
Q ss_pred EecccCeeeceeeccCCCCc--eEEEeecCCC--------CeEEeeccCCceeeee-----------------eeccCCC
Q 010037 311 WKVIEHERLDGFDVQDTDPS--CLYFTINHLS--------QLIPIDVDKEKIDKTK-----------------SLRKSSD 363 (519)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----------------~~~~s~~ 363 (519)
|-+-.+.-...+-....... .+.|..++.. .++...+++.++.... .+.+-..
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence 99977764444332222222 2333332221 1112222222211000 0111222
Q ss_pred eeEEEeCCc-ccccccccee--E----eeccCCCeeEEEEc--------CCC-eEEEEeCCCcEEEEECCCCeEEEEecC
Q 010037 364 LTCVVLPPK-VFRLLEKPLH--E----FQGHSSEVLDLSWS--------KNG-FLLSSSADKTVRLWQVGIDRCLRVFSH 427 (519)
Q Consensus 364 ~~~~~~~~~-~~~~~~~~~~--~----~~~h~~~V~~l~~s--------p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h 427 (519)
+.+.+++.. .|...-+.-. . +......|..+.|. |+. .|+.+-..|.+.|-.-.+......+..
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 333333321 1111111111 0 11112235566664 355 899999999998876655555555666
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCC---------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 428 NNYVTSVAFNPVDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg---------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
.-.+..+.|+| +|..|+.++.+. .|.+|..-..-+-.+......|++++|-..|-.++.+- |+.|++=+
T Consensus 258 gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 258 GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred ccEeecceecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 67899999999 999999988652 45555544333335666777899999987776666554 56666655
Q ss_pred CCC
Q 010037 499 IKG 501 (519)
Q Consensus 499 l~~ 501 (519)
++-
T Consensus 336 IRP 338 (1189)
T KOG2041|consen 336 IRP 338 (1189)
T ss_pred ecc
Confidence 553
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=6.3e-09 Score=97.38 Aligned_cols=244 Identities=18% Similarity=0.261 Sum_probs=148.3
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC------------CCEEEEEEccCCC--EEE
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La 300 (519)
.+.+.++.|...|.+|++|...|+|.++.-.+...-. .....+|++|. ..|..+.|..++. .++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 3566778999999999999999999999876543111 11112355554 3588899977553 455
Q ss_pred EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (519)
Q Consensus 301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (519)
..+.|.+|++|.+........-+.. . .-.+.....+.+.. .........+....++ ..+|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nn---l-s~~~~~~~~g~~~s-------~~~l~lprls~hd~ii---------aa~p 163 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENN---L-SDSFHSPMGGPLTS-------TKELLLPRLSEHDEII---------AAKP 163 (460)
T ss_pred EecCCceeeeeeeecccchhhhccc---c-ccccccccCCCcCC-------HHHhhcccccccceEE---------Eecc
Confidence 5668999999998765432111000 0 00000000000000 0000000001111110 0122
Q ss_pred eeEe-eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE-EEEe---cC-----CCcEEEEEEeeCCCCEEEEEeCC
Q 010037 381 LHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVF---SH-----NNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 381 ~~~~-~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~-~~~~---~h-----~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
.+.+ ..|.--|.++.+..+...+..+.|=.|.+|++..... .... +| ...|++..|+|...+.|.-.+..
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 3333 5688889999999988555556788899999874322 1111 23 34689999999878888888999
Q ss_pred CeEEEEEcCCCcEE-------e----------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 451 GKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 451 g~V~iwd~~~~~~~-------~----------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
|.|++-|++...+- . +......|..+.|+++|+++++-+.- +|+|||++.
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm 310 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNM 310 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccc
Confidence 99999999853211 0 12233468889999999998887654 799999864
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=9.8e-07 Score=89.11 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=150.9
Q ss_pred ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-----eC-----CCcEE
Q 010037 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GE-----DGTVR 309 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-----s~-----Dg~I~ 309 (519)
..+++++|+++|.+ .++.|+|++.......+ .--...+.++.|+|-|.||.|- .. .-.++
T Consensus 39 v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~l---------t~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYS-DNQVVKVFEIATLKVVL---------CVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred eEEEcCCCcEEEEE-cCCeEEEEEccCCcEEE---------EeccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 35788999888876 45779999887544211 1122268899999999999872 12 23577
Q ss_pred EEecccCeeeceeeccCCCCceEEEeecCCC-------CeEEeeccC----------CceeeeeeeccCCCeeEEEeCCc
Q 010037 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLS-------QLIPIDVDK----------EKIDKTKSLRKSSDLTCVVLPPK 372 (519)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~ 372 (519)
+|++.++.....+........+..|+.+... .+....... .++.......+.....+.++-+.
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 9999986554444433333334444333211 111111111 11111111111122222222221
Q ss_pred c---------ccccc----cceeEeeccCCCeeEEEEcCCC--eEEEEe--CC---------CcEEEEECCCCeEEEEec
Q 010037 373 V---------FRLLE----KPLHEFQGHSSEVLDLSWSKNG--FLLSSS--AD---------KTVRLWQVGIDRCLRVFS 426 (519)
Q Consensus 373 ~---------~~~~~----~~~~~~~~h~~~V~~l~~sp~~--~L~sgs--~D---------g~V~lWdl~~~~~~~~~~ 426 (519)
. +.+.. .++..-.-....-..+.|++-| +|+.++ -| .++++.++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 1 11110 0110000012344568899877 444333 33 368999999778888888
Q ss_pred CCCcEEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec---CCeEEEEECCC
Q 010037 427 HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKG 501 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~s--gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~---dg~v~iwdl~~ 501 (519)
..++|.+++|+| ++.-|++ |-.-.++.|+|++..-+..+. .++-+++-|+|.|++|+.++- .|.|.|||+.+
T Consensus 269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 899999999999 7765554 556789999999865554443 345678899999999998876 48899999998
Q ss_pred Ceeee
Q 010037 502 MQIFD 506 (519)
Q Consensus 502 ~~l~~ 506 (519)
.+++.
T Consensus 346 ~K~i~ 350 (566)
T KOG2315|consen 346 RKLIA 350 (566)
T ss_pred hhhcc
Confidence 76653
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=2.1e-08 Score=97.28 Aligned_cols=79 Identities=23% Similarity=0.552 Sum_probs=70.0
Q ss_pred eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 384 ~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
.-||-..+++++|+|++ +|+++..|..||+-.......+..| +|...|..++.-+ +..|++|+.|++|++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 46799999999999999 9999999999999888777666665 4999999999986 56699999999999999999
Q ss_pred CcEE
Q 010037 461 CQVV 464 (519)
Q Consensus 461 ~~~~ 464 (519)
++.+
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 8765
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=7.3e-07 Score=102.02 Aligned_cols=218 Identities=10% Similarity=0.093 Sum_probs=136.4
Q ss_pred cceeecCCCCeEEee-ecCCeEEEeeCCccccc-ccc-ccccceeecC-------CCCEEEEEEcc-CCCEEEEEeCCCc
Q 010037 239 GSATLKPGDHELTLG-QRMRRVRVHPVKKQSRE-LSS-LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDGT 307 (519)
Q Consensus 239 ~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~-~~~-~~~~~~l~~H-------~~~I~~l~fsp-dg~~LaSgs~Dg~ 307 (519)
..+++.+++..|+++ ...+.|++++....... +.. ......+.+. -..-+.|+|+| ++..+++.+.++.
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~ 706 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ 706 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe
Confidence 457888888766554 44578898887643321 000 0000000000 11236899999 5666777778899
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|++||..++... .+. ..... .... +. . .....
T Consensus 707 I~v~d~~~g~v~-~~~------------G~G~~-------------------~~~~--------------g~-~-~~~~~ 738 (1057)
T PLN02919 707 IWEYNISDGVTR-VFS------------GDGYE-------------------RNLN--------------GS-S-GTSTS 738 (1057)
T ss_pred EEEEECCCCeEE-EEe------------cCCcc-------------------ccCC--------------CC-c-ccccc
Confidence 999998665421 110 00000 0000 00 0 00011
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-------------c-C--------CCcEEEEEEeeCCCCE
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDNY 443 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-------------~-h--------~~~V~~v~fsp~d~~~ 443 (519)
-.....|+++|++ .+++-+.++.|++||+.++...... . + -.....++++| ++++
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~L 817 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQI 817 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcE
Confidence 2346779999998 4556667799999999876532111 0 0 11246889999 8899
Q ss_pred EEEEeCCCeEEEEEcCCCcEEeeccCC--------------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 444 FISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~~~~~~~--------------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
+++-+.++.|++||..++.+....+.. .....++++++|+++++-+.++.|++||+.++++.
T Consensus 818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 999999999999999988776443221 24678999999998888888999999999988653
No 261
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=2.7e-06 Score=79.73 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=119.3
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~ 320 (519)
++.+++|++||+- .|..|.|...++.-.... -..+.-+.-.-.=+.++||||+..||.+...|+|+++|+....+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf- 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF- 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-
Confidence 4667888888775 677888877654322211 111111222223467999999999999999999999999764432
Q ss_pred eeeccCC-------CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC-ccccccccceeEeec-cCCCe
Q 010037 321 GFDVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KVFRLLEKPLHEFQG-HSSEV 391 (519)
Q Consensus 321 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~-h~~~V 391 (519)
.+..... .+..+.|...... ..-......+.-.+...-..... ..-...+.....+.. +...|
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKS--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccc--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 2221110 1111112111100 00001111111111111111111 000111112223333 46789
Q ss_pred eEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC------eEEEEEcCCCc
Q 010037 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG------KVRIWEVRRCQ 462 (519)
Q Consensus 392 ~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg------~V~iwd~~~~~ 462 (519)
.++.|+|.. +|+.|+ ....-..+. .....+++-..-.....+..+.+. |+ +..+|.+-+.+
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~ 220 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK 220 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence 999999987 554444 333211110 011112221111101111111111 11 12334433333
Q ss_pred EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.. ........|..+..+|||+.||+...+|.|.+|++.+.+++
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 22 22345678999999999999999999999999999886654
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=4.3e-08 Score=93.14 Aligned_cols=202 Identities=14% Similarity=0.271 Sum_probs=132.8
Q ss_pred CeEEeeecCCeEEEeeCCcccccccc--------------c--------------ccccee-ecCCCCEEEEEEccCCCE
Q 010037 248 HELTLGQRMRRVRVHPVKKQSRELSS--------------L--------------YTGQEF-LAHEGSILTMKFSLDGQY 298 (519)
Q Consensus 248 ~~lasgs~dg~I~vw~~~~~~~~~~~--------------~--------------~~~~~l-~~H~~~I~~l~fspdg~~ 298 (519)
..++..+.|.+|++|.+......... + .+.+.+ .+|+--|++|.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 45667778999999988754432200 0 000111 368888999999999998
Q ss_pred EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (519)
Q Consensus 299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (519)
++++ .|=.|.+|++.-..... .++-..+
T Consensus 179 ~lSA-DdLRINLWnlei~d~sF--------------------------------------------nIVDIKP------- 206 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSF--------------------------------------------NIVDIKP------- 206 (433)
T ss_pred Eeec-cceeeeeccccccCCce--------------------------------------------eEEEccc-------
Confidence 8877 57789999985322100 0000000
Q ss_pred cceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE----EEEec-------------CCCcEEEEEEeeC
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC----LRVFS-------------HNNYVTSVAFNPV 439 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~----~~~~~-------------h~~~V~~v~fsp~ 439 (519)
..+..-..-|++..|+|.. .++-.+..|+|+|-|++.... .+.|. .-..|..+.|++
T Consensus 207 ---~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~- 282 (433)
T KOG1354|consen 207 ---ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH- 282 (433)
T ss_pred ---cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-
Confidence 0111223457888899976 888888899999999984321 12221 124578899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-CcEEe-eccC------------CCc---eEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRR-CQVVD-YTDI------------REI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~-~~~~~-~~~~------------~~~---V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+|+|+++-.. -+|+|||++. .+.+. +.-| .+. -..++|+-++.++++|+....+++|++..|
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999998654 4899999953 33332 2211 111 245899999999999999999999997766
Q ss_pred eeee
Q 010037 503 QIFD 506 (519)
Q Consensus 503 ~l~~ 506 (519)
....
T Consensus 362 sk~d 365 (433)
T KOG1354|consen 362 SKED 365 (433)
T ss_pred ccee
Confidence 5443
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1e-06 Score=89.60 Aligned_cols=191 Identities=19% Similarity=0.282 Sum_probs=129.8
Q ss_pred cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE------c--------------cCCCEEEEEe
Q 010037 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------S--------------LDGQYLASGG 303 (519)
Q Consensus 244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------s--------------pdg~~LaSgs 303 (519)
.|...++|....||.++||+........ .+... ..-.+...+.+| + .+...|+-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~-e~~p~---~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ-EFAPI---ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee-eeccc---hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 4567799999999999999998654321 11111 111233334443 1 1334677788
Q ss_pred CCCcEEEEecccCeeeceeeccCCCCceEEEe-ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (519)
Q Consensus 304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (519)
..|.|.+|++..++....+............. ..... .....+.+..+..|..+.. ..++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---------------ciyS~~ad~~v~~~~~~~~----~~~~ 138 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---------------CIYSVGADLKVVYILEKEK----VIIR 138 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---------------ceEecCCceeEEEEecccc----eeee
Confidence 89999999999998877765433322221111 11111 1234456667777766653 3467
Q ss_pred EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCC-----CCEEEEE-eCCCeEE
Q 010037 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-----DNYFISG-SIDGKVR 454 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d-----~~~l~sg-s~Dg~V~ 454 (519)
.+.+....+.+++.+|++ .|++++ ++|++||+++++.+..|. |.++|.+++|-. . |.+++++ ..+.-+.
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeecccccccee
Confidence 788888999999999999 888887 689999999999999997 999999999987 4 5566554 3455678
Q ss_pred EEEcCC
Q 010037 455 IWEVRR 460 (519)
Q Consensus 455 iwd~~~ 460 (519)
+|-+..
T Consensus 216 ~w~v~~ 221 (541)
T KOG4547|consen 216 VWVVEK 221 (541)
T ss_pred EEEEEc
Confidence 887654
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=5.7e-07 Score=93.51 Aligned_cols=94 Identities=7% Similarity=0.020 Sum_probs=68.4
Q ss_pred CCCeeEEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRR 460 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~D---g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~ 460 (519)
...+....|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| ++++|+.... ...|.+||+.+
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 3456678899999 66655443 469999999988765544445678899999 8887775433 35799999998
Q ss_pred CcEEeeccCCCceEEEEEeeCC
Q 010037 461 CQVVDYTDIREIVSAVCYCPDG 482 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg 482 (519)
++...+....+.+...+|+|-.
T Consensus 405 g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 405 KKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEeecCCCcccCceecCCC
Confidence 8777666556667788888754
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.77 E-value=1.8e-06 Score=86.34 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=160.4
Q ss_pred ccccccccCCeeeEeeccc-------ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEc
Q 010037 221 KRGWLKKLGAMARIIDRHG-------SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS 293 (519)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~-------~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs 293 (519)
...|.-..+.+......+. -+.|+-+++++|-- -...++|+++. ......... .++ ...|....|+
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~---~lr--~~gi~dFsis 182 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFK---NLR--PVGILDFSIS 182 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchh---hcc--ccceeeEEec
Confidence 4556555555443333222 24577788877654 34568999873 222222111 111 3568889999
Q ss_pred cCC--CEEEE-----EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037 294 LDG--QYLAS-----GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (519)
Q Consensus 294 pdg--~~LaS-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (519)
|.+ ..||. .+.++.++||.+..+..+.....-....-.+.|...+...++.+.... +..+. . -+....
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKs--y--fgesnL 257 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKS--Y--FGESNL 257 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccc--e--eccceE
Confidence 953 44554 467899999999877766555544444444445444433332222111 10000 0 011122
Q ss_pred EEeCCccccccccceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 010037 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (519)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~ 443 (519)
.++.. .+..+.....-.++|.+.+|.|.+ -+++|-++..+.++|++.. +.-......=+.+.|+| .+++
T Consensus 258 yl~~~-----~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~ 329 (561)
T COG5354 258 YLLRI-----TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERY 329 (561)
T ss_pred EEEee-----cccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccE
Confidence 22222 223333333567899999999987 4555678999999999987 33333445567789999 8999
Q ss_pred EEEEeCC---CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeee
Q 010037 444 FISGSID---GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIF 505 (519)
Q Consensus 444 l~sgs~D---g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~ 505 (519)
++.++.| |.|-+||......+.-.-.....+-+.|+|||+++.+... |..|.|||+.+.+..
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 9987765 6799999987655532222223455689999999888654 778999999876654
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.4e-07 Score=89.73 Aligned_cols=114 Identities=13% Similarity=0.339 Sum_probs=79.6
Q ss_pred CCCeeEEEEcCCC-eEEEEe---CCCcEEEEECCC-C---eEEEEecCCCcEEEEEEeeCCCCEEEEEe---CCCeEEEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGI-D---RCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW 456 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs---~Dg~V~lWdl~~-~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~iw 456 (519)
...|...+|-|.| .+++-+ ...++.+|.+++ . +.+..+. ....+.|.|+| .|++++.+. ..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSP-KGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence 4567889999999 544433 246799998874 2 2233333 35678999999 899888754 46889999
Q ss_pred EcCCC--cEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCee
Q 010037 457 EVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQI 504 (519)
Q Consensus 457 d~~~~--~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l 504 (519)
|..-. +......| ...+.+.|.|.|+|+++++. |.--+||+.++..+
T Consensus 523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 99853 33333333 34578999999999999886 34467888876544
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=8.7e-08 Score=92.99 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=87.3
Q ss_pred EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeC
Q 010037 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPD 481 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spd 481 (519)
.++....+.+|....+.+...+.|-..++.|+|+| |+++++++..|.+|||-.......+. ..+|..-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 44556677788777788888889999999999999 89999999999999999998877773 5679999999999776
Q ss_pred CCEEEEEecCCeEEEEECCCCeeee
Q 010037 482 GKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 482 g~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
. .|++|+.|+++++||+.+++...
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCccc
Confidence 5 48999999999999999998754
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=2.9e-06 Score=87.76 Aligned_cols=194 Identities=9% Similarity=0.075 Sum_probs=119.0
Q ss_pred ceeecCCCCe-EEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEe
Q 010037 240 SATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVWK 312 (519)
Q Consensus 240 ~~~~sp~g~~-lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg--~I~iWd 312 (519)
...|+|+|+. ++..+. ...|.++++..+... .+....+.+....|+|||+.|+. .+.++ .|.+++
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 4689999985 554333 356888887654432 12234455667889999987654 33333 455555
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
+.++... .+..+.....
T Consensus 264 l~~g~~~---------------------------------------------------------------~LT~~~~~d~ 280 (419)
T PRK04043 264 TNTKTLT---------------------------------------------------------------QITNYPGIDV 280 (419)
T ss_pred CCCCcEE---------------------------------------------------------------EcccCCCccC
Confidence 5444311 1111111123
Q ss_pred EEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---------CeEEEEEcC
Q 010037 393 DLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEVR 459 (519)
Q Consensus 393 ~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---------g~V~iwd~~ 459 (519)
...|+|+| .|+-.+ ..+ .|.+.|+.+++..+....... ...|+| ++++++..... ..|.+.|+.
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 34799999 554443 333 588888888877554432222 248999 88888766543 368888998
Q ss_pred CCcEEeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeecc
Q 010037 460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDLS 508 (519)
Q Consensus 460 ~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~~ 508 (519)
++....+.... ......|+|||+.|+..+..+ .+.+.++.+.....+.
T Consensus 358 ~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 358 SDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 88766554432 334688999999887766432 3778888776655553
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.4e-08 Score=101.48 Aligned_cols=172 Identities=17% Similarity=0.299 Sum_probs=127.3
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (519)
+.+.||+..|..+.--.+.+-+++++.|++|++|.+....-- ...
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-------~~t---------------------------- 773 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-------IGT---------------------------- 773 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-------ccc----------------------------
Confidence 357899999999887777788999999999999998543210 000
Q ss_pred eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEE
Q 010037 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS 433 (519)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~ 433 (519)
.....+++.|+.+|.++.|-.+. ++++ -|+.|++||.--++++.... ..+.+..
T Consensus 774 --------------------saCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 774 --------------------SACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred --------------------ceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCce
Confidence 01245577899999999998876 5544 48999999988887776442 2333444
Q ss_pred EEEeeC-CCCEEEEE-eCCCeEEEEEcCCCcEE-e-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 434 VAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVV-D-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 434 v~fsp~-d~~~l~sg-s~Dg~V~iwd~~~~~~~-~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
|..-|. +..+++.| +...+|+++|.+.+.-. . .......+.+++..|.|++++++-..|.|.+.|.++|+++
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 444342 45555555 67889999999987644 2 2344567899999999999999999999999999999976
Q ss_pred e
Q 010037 506 D 506 (519)
Q Consensus 506 ~ 506 (519)
.
T Consensus 912 N 912 (1034)
T KOG4190|consen 912 N 912 (1034)
T ss_pred c
Confidence 4
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=4.2e-08 Score=101.30 Aligned_cols=210 Identities=18% Similarity=0.257 Sum_probs=145.9
Q ss_pred CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeeceee
Q 010037 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFD 323 (519)
Q Consensus 245 p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~~~ 323 (519)
|-..+-++......-.||++......... -.+.+|..+|+.+.|+|+. ..||+++.|-.|+.||+++...
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----- 149 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----- 149 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-----
Confidence 33445556566666778888754432221 2367999999999999955 5899999999999999976542
Q ss_pred ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (519)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L 402 (519)
++..+..-......++|+-.. .+
T Consensus 150 --------------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 150 --------------------------------------------------------PFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred --------------------------------------------------------ceeeeecccccCceeeecccCcch
Confidence 122222223445667887765 67
Q ss_pred EEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEE
Q 010037 403 LSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCY 478 (519)
Q Consensus 403 ~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~ 478 (519)
++.+..+.|++||++.+ .++..++ |-..|+.+.|+..-...+.+.+.||+|+.||..+...- .......+|..-+|
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 77777888999999876 4555554 88889999998766677889999999999998765433 45556678888889
Q ss_pred eeCCCEEEEE--ecCCeEEEEECCCCeeee--ccccceeEEecCC
Q 010037 479 CPDGKGGIVG--TMTGNCRFYDIKGMQIFD--LSTTAYLFALLGH 519 (519)
Q Consensus 479 spdg~~l~sg--s~dg~v~iwdl~~~~l~~--~~~~~~~~~l~GH 519 (519)
.|-|...++- -.+..+.+++-++..+.. .....+++++.||
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 9976654442 223356666665543322 2344579999998
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.68 E-value=3.1e-06 Score=84.67 Aligned_cols=239 Identities=15% Similarity=0.177 Sum_probs=152.9
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-----------
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG----------- 306 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg----------- 306 (519)
+..+.++|.|.+|++....| |.+|......+ +. .+. | ..|.-+.|+|+++||.|-+.-+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~------~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-LV------RFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhh-ee------eee-c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 33478999999999876654 89998764442 21 111 2 3588999999999999975433
Q ss_pred ----cEEEEecccCeeeceeeccCCC--Cc-eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037 307 ----TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (519)
Q Consensus 307 ----~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (519)
.+.+||+.++..+..+...... .. .+.|+.+..-.... ....+.++.. .-.+...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----------------v~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----------------VGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----------------ccCeEEEEec-CCccccC
Confidence 4899999999988877665544 22 33333332211111 0111122221 1112223
Q ss_pred ceeEeeccCCCeeEEEEcCCC---eEEE-----EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe--
Q 010037 380 PLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-- 448 (519)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~~---~L~s-----gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs-- 448 (519)
+.+.+. ...|...+|+|.+ .|+. ...++++++|.+..+..+.+.. ....=..+.|++ .+++|+.--
T Consensus 167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t 243 (561)
T COG5354 167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMT 243 (561)
T ss_pred chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEE
Confidence 333333 3568899999974 4443 4678899999999877766543 222224578888 777665421
Q ss_pred ---------CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe--cCCeEEEEECCCCeeeec
Q 010037 449 ---------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 449 ---------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~~~~l~~~ 507 (519)
....++|+++....+-...+..++|...+|.|.++.+++.+ ..-.+.++|++++-...+
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~ 313 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF 313 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEec
Confidence 12468888888655544447789999999999998776654 677899999988744444
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.67 E-value=5.5e-07 Score=85.77 Aligned_cols=209 Identities=17% Similarity=0.247 Sum_probs=126.1
Q ss_pred cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc-Ceeeceeec-cCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (519)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (519)
.+.+.||.+.|+....-|-..-+++.+.|.++|||--.. ++.-..+.. .+.+.+++.+.... ..+.+.........
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 345789999999988888777899999999999996433 332222211 12223333332222 11111111111110
Q ss_pred eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEE-------------------
Q 010037 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW------------------- 414 (519)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lW------------------- 414 (519)
... +. .+. .-...+.+..|...|..+-|+-.. .+++.+.|+.+.--
T Consensus 95 fs~---se----------dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~ 160 (404)
T KOG1409|consen 95 FAL---SE----------DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASA 160 (404)
T ss_pred EEh---hh----------hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCC
Confidence 000 00 000 001122333455555555444433 44444444332211
Q ss_pred --------------------EC--CCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--cEEeeccC
Q 010037 415 --------------------QV--GIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDYTDI 469 (519)
Q Consensus 415 --------------------dl--~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~ 469 (519)
.+ ..-.++..+ .|.+.+++++|.| ....|.+|..|..|.+||+-.. .......|
T Consensus 161 ~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 161 LQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred CceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 11 111122233 3899999999999 8899999999999999998654 45578889
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
...|..+++.+--+.|++++.||.|.+|++...
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999999999999999999999999999999754
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-07 Score=90.52 Aligned_cols=245 Identities=16% Similarity=0.149 Sum_probs=165.5
Q ss_pred ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCeeece
Q 010037 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG 321 (519)
Q Consensus 243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~~~~ 321 (519)
+..-.+++.+++.||.++.|.-.. .........+..|.+.|.+++.+.+|..+.|.+. |..++++|+..-..+.-
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 334557889999999999997653 1222333456789999999999999999999887 99999999988776655
Q ss_pred eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-
Q 010037 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (519)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~- 400 (519)
++....+..+... ......+..+. +....++.+.+++...-. ......-.-|..+|.++.+.+-+
T Consensus 92 iKL~~lPg~a~wv-~skGd~~s~IA-----------Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 92 IKLVDLPGFAEWV-TSKGDKISLIA-----------VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cccccCCCceEEe-cCCCCeeeeEE-----------eecccCCCcEEECCcCCc--CccceecccccCceEEEEeecccc
Confidence 5544333322222 22221111111 112223333333332211 01222334599999999999998
Q ss_pred eEEEEeCCCcEEEEECCC------CeEEEEe----------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~------~~~~~~~----------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
.+++....|.|.-|.... ......+ +.....+++.|+| ++..+.+-+.|.+|++++.++++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 888888899999998763 1111111 2456789999999 9999999999999999999988654
Q ss_pred eecc---------------------------------C-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 465 DYTD---------------------------------I-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 465 ~~~~---------------------------------~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
+..+ + ...-+.++|...|++|+-|+.=| |++.++.++.+..+
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 2110 1 11245688999999999988765 78999999887765
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.62 E-value=7.9e-06 Score=92.02 Aligned_cols=252 Identities=16% Similarity=0.183 Sum_probs=152.4
Q ss_pred EeecccceeecCCCCeEEeeecCCeEEEeeCCc-----------------------cccccc--------------cccc
Q 010037 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------------------QSRELS--------------SLYT 276 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-----------------------~~~~~~--------------~~~~ 276 (519)
...++.+++|+||+..|+..+.+++|.+-...= ++++-. ....
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 345677899999999999999999987753210 000000 0000
Q ss_pred ----cceeecCCCCEEEEEEccCCCEEEEEeC---C---CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEee
Q 010037 277 ----GQEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346 (519)
Q Consensus 277 ----~~~l~~H~~~I~~l~fspdg~~LaSgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (519)
...+. +...-..|+|-.||.|+|+.+. . ..||||+-+ |.....-.....-..++.|.|.+. .++...
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q 275 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQ 275 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEE
Confidence 00112 3445567999999999998874 2 579999965 554333332222333445554442 122111
Q ss_pred ccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--E
Q 010037 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--R 423 (519)
Q Consensus 347 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~--~ 423 (519)
. ......++++.....+..+ ....+......|..|+|++++ .|+....|. |.+|...+...- +
T Consensus 276 ~------------~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 276 R------------LPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred E------------cCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 1 1122344444433322211 111112345678999999999 777766554 999998876532 2
Q ss_pred Ee--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC----CC----------------cEEe----------------
Q 010037 424 VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC----------------QVVD---------------- 465 (519)
Q Consensus 424 ~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~----~~----------------~~~~---------------- 465 (519)
.+ .....+..+.|+|.+...|...+.+|.+..++.. .+ ..+.
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 22 2444566699999888888888887877666542 11 1111
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
.......|..++|++++..+++-..||.|.+|.....
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1224567999999999988999999999999986543
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=96.57 Aligned_cols=171 Identities=19% Similarity=0.282 Sum_probs=129.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (519)
Q Consensus 284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (519)
.....|+.|+.+..|+|.||.||.+++..+.+...-..... ++ . ...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------la----------a----------------~sn 60 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LA----------A----------------ASN 60 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------cc----------c----------------ccc
Confidence 35678999999999999999999999998866542111100 00 0 000
Q ss_pred eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe---cCCCcEEEEEEeeC
Q 010037 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV 439 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~---~h~~~V~~v~fsp~ 439 (519)
-..-+++.||+..|..+.|+.+. .|-|+..+|.|.+|-+-.+...... ...+.|.+++|+.
T Consensus 61 --------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~- 125 (1189)
T KOG2041|consen 61 --------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL- 125 (1189)
T ss_pred --------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence 01135689999999999999988 9999999999999998887655443 2667899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+|..++..-.||.|.+=.+...++....-.......+.|++|.+.++.+-..|.+++||..++
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 999999888899888877766555432222333457899999999999999999999998764
No 276
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=4.6e-05 Score=73.59 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=150.9
Q ss_pred cccceeecC-CCCeEEeeecCCe-EEEeeCCcccccc-ccccccceeecCCCCEEEEEEccCCCEEEEEe-----CCCcE
Q 010037 237 RHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGTV 308 (519)
Q Consensus 237 ~~~~~~~sp-~g~~lasgs~dg~-I~vw~~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-----~Dg~I 308 (519)
+...++.+| ....++.+-..|+ ..+||........ ......+-|.+|- .||+||++|++.- ..|.|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEE
Confidence 344578889 5556677777776 5678877554321 1223445677774 8999999999863 35889
Q ss_pred EEEecc-cCeeeceeeccCCCCceEEEeecCCCCeEEee-ccCC-ceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 309 RVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 309 ~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
-|||.. +.+.+.++..+.-.+.-+.+.++....+++.. +... ...+.+.-...-...+.+.+.....+.++....-.
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 999998 66777777777666666777666644333321 1111 00112222223333444444444333222111114
Q ss_pred ccCCCeeEEEEcCCCeEEEEeC-CC-------cEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEe-
Q 010037 386 GHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS- 448 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~~L~sgs~-Dg-------~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs- 448 (519)
-|...|..|++.++|.++.+.. .+ -|-+++- ++.+..+. ...++-+|++++ ++.++++.+
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsP 236 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSP 236 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECC
Confidence 4788999999999995555532 21 2444433 33333332 568999999999 777665544
Q ss_pred CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 449 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
..+.+.+||..+++++......+ +..++-.+++ ++..+..|.+.....
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLSP 284 (305)
T ss_pred CCCEEEEEECCCCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEccC
Confidence 67899999999999986554433 4566666666 444444565444443
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=9.9e-06 Score=74.96 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=88.6
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~- 464 (519)
+.++++++++ ++++.+....|-.|.+... ..+++. ...+.=.+..|+. ....||++++||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence 7889999999 8888899999999988653 223322 2455567888998 8889999999999999999975433
Q ss_pred -----eeccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCCCeee
Q 010037 465 -----DYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 465 -----~~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
....|.+.+..+.|+|-|. +|...-.-+.+.+-|+++++-.
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 2456889999999998764 4555666788999999987543
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.55 E-value=1.2e-05 Score=79.86 Aligned_cols=171 Identities=11% Similarity=0.159 Sum_probs=132.0
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEecccCeeeceeec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV 324 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-~I~iWd~~~~~~~~~~~~ 324 (519)
+|.+++..+. |+..|.+...... .-.+|.+.|.-..+..++.-++.|..|| .+-|+|..+++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------ 394 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------ 394 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence 5667766655 4555544332111 1246888899888988888899999999 899999887763
Q ss_pred cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE
Q 010037 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (519)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~ 403 (519)
..+...-+.|..+..+++| +++
T Consensus 395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence 2234455778999999999 788
Q ss_pred EEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC----eEEEEEcCCCcEEeeccCCCceEEEEE
Q 010037 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY 478 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~~~~~V~~v~~ 478 (519)
.+.....|.+.|+.++.....-. ..+-|+.+.||| +++++|-+--+| .|+++|+.++++.........=.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 88888899999999998755443 667899999999 999999877665 699999999999987777777778899
Q ss_pred eeCCCEEEEEec
Q 010037 479 CPDGKGGIVGTM 490 (519)
Q Consensus 479 spdg~~l~sgs~ 490 (519)
.|||++|.--+.
T Consensus 497 D~d~ryLYfLs~ 508 (668)
T COG4946 497 DPDGRYLYFLSA 508 (668)
T ss_pred CCCCcEEEEEec
Confidence 999998776553
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.1e-07 Score=61.56 Aligned_cols=36 Identities=47% Similarity=0.860 Sum_probs=33.9
Q ss_pred cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
.+++.+|.++|++|+|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356899999999999999999999999999999997
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.54 E-value=1.8e-05 Score=78.52 Aligned_cols=122 Identities=12% Similarity=0.176 Sum_probs=101.9
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg-~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
+|.+.|.-..+..++ -++.|..|| .+-|+|..+++..+....-+.|.++..+| +|.+++.+.....|.+.|+.++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 345556666665555 788899998 89999999999888878888999999999 999999999889999999999987
Q ss_pred Eee-ccCCCceEEEEEeeCCCEEEEEecCC----eEEEEECCCCeeeecc
Q 010037 464 VDY-TDIREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKGMQIFDLS 508 (519)
Q Consensus 464 ~~~-~~~~~~V~~v~~spdg~~l~sgs~dg----~v~iwdl~~~~l~~~~ 508 (519)
... ....+.|+.++|+|+++++|-+--+| .|++||+.+++++.+.
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 643 33456799999999999999877665 5899999999998764
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=0.0002 Score=69.39 Aligned_cols=249 Identities=14% Similarity=0.167 Sum_probs=148.7
Q ss_pred ceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeccc
Q 010037 240 SATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE 315 (519)
Q Consensus 240 ~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~ 315 (519)
=++|+|++++|.++-.+ |.|..|.+....-.+..+.. +.+.++ +-+.++++++|++|+++.. -|.|.++-++.
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 37999999999886554 78888888764333332211 122332 2378999999999999876 47899999866
Q ss_pred C-eeeceeec--cCCC----------CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037 316 H-ERLDGFDV--QDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (519)
Q Consensus 316 ~-~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (519)
. ......+. +... .....+.+.+ ..++..++..+++.. +......+......
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~--------------y~~~dg~L~~~~~~ 185 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFL--------------YDLDDGKLTPADPA 185 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEE--------------EEcccCcccccccc
Confidence 3 32221111 1111 1122222222 122333333333221 11111111111111
Q ss_pred EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEe-------cCCCcEEEEEEeeCCCCEEEEEeC
Q 010037 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVF-------SHNNYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~----~~~~~~-------~h~~~V~~v~fsp~d~~~l~sgs~ 449 (519)
.+ ........|.|+|++ ..+.+-.+++|.+|..... +.++.+ ......-.|..+| +|++|.++..
T Consensus 186 ~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR 263 (346)
T COG2706 186 EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR 263 (346)
T ss_pred cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence 12 345667899999999 3345567899999998873 222222 1456778899999 9999988764
Q ss_pred -CCeEEEEEcCC--CcEE---eeccCCCceEEEEEeeCCCEEEEEecCC-eEEEEEC--CCCeeeecc
Q 010037 450 -DGKVRIWEVRR--CQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDI--KGMQIFDLS 508 (519)
Q Consensus 450 -Dg~V~iwd~~~--~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg-~v~iwdl--~~~~l~~~~ 508 (519)
...|.+|.+.. +++. ....+........++|+|++|+++..++ .|.+|.. .+|+|-.+.
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 34788887754 3322 2334444578899999999999998865 4888865 467665543
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.50 E-value=3.3e-05 Score=88.63 Aligned_cols=221 Identities=10% Similarity=0.053 Sum_probs=131.4
Q ss_pred ceeecCC-CCeEEeeecCCeEEEeeCCccccccccc--cc----cceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 010037 240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSL--YT----GQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (519)
Q Consensus 240 ~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~--~~----~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iW 311 (519)
.+++++. +.++++-+..++|++++........... .. ..--.++-.....|++.++++.|+.+. .++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 4788875 5677777788999999976432110000 00 000011223457899999888665554 45678888
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
|+.++.. ..+....... ... .+.... ... .-...
T Consensus 652 d~~~~~V-~tlag~G~~g---------------~~~-----------~gg~~~---------------~~~----~ln~P 685 (1057)
T PLN02919 652 DFVNETV-RTLAGNGTKG---------------SDY-----------QGGKKG---------------TSQ----VLNSP 685 (1057)
T ss_pred ecCCCEE-EEEeccCccc---------------CCC-----------CCChhh---------------hHh----hcCCC
Confidence 8866542 1111000000 000 000000 000 01223
Q ss_pred eEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec---------------CCCcEEEEEEeeCCCC-EEEEEeCCCeE
Q 010037 392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGKV 453 (519)
Q Consensus 392 ~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------------h~~~V~~v~fsp~d~~-~l~sgs~Dg~V 453 (519)
.+++++| ++ .+++.+.++.|++||..++....... .-...+.|+|+| ++. ++++-+.++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 5789999 45 66777788999999998775532111 012356799999 766 56666778999
Q ss_pred EEEEcCCCcEEeecc--------------C--------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 454 RIWEVRRCQVVDYTD--------------I--------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 454 ~iwd~~~~~~~~~~~--------------~--------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
++||+.++......+ . -.....++++++|+++++-+.++.|++||..++.+..+
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 999998765321110 0 11246899999999888888899999999998876543
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.50 E-value=0.00012 Score=74.16 Aligned_cols=247 Identities=13% Similarity=0.150 Sum_probs=129.4
Q ss_pred EEeeecC----CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC----CCcEEEEecccC-eeec
Q 010037 250 LTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLD 320 (519)
Q Consensus 250 lasgs~d----g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~----Dg~I~iWd~~~~-~~~~ 320 (519)
+++|+.. +.|.+|+++.....+.... .+. -......|+++|++++|.++.+ +|.|..|++... ..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~---~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ---TVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEE---EEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEee---eec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence 3445444 7899999854444343221 211 2344567899999999998876 578999998764 2222
Q ss_pred eee-ccCCCCceEEEeecC-CCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037 321 GFD-VQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (519)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (519)
.+. ............... ...++......+.+.... +... +.+..... .+...+..............++.++|
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~-l~~~--g~l~~~~~-~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP-LDDD--GSLGEVVQ-TVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE-ECTT--SEEEEEEE-EEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE-ccCC--cccceeee-ecccCCCCCcccccccccceeEEECC
Confidence 221 111122222222222 222333333222221111 1110 00000000 00000000000011234577899999
Q ss_pred CC-eEEEE-eCCCcEEEEECCCCe--EEE----EecCCCcEEEEEEeeCCCCEEEEE-eCCCeEEEEEcC--CCcEE--e
Q 010037 399 NG-FLLSS-SADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVR--RCQVV--D 465 (519)
Q Consensus 399 ~~-~L~sg-s~Dg~V~lWdl~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~iwd~~--~~~~~--~ 465 (519)
++ ++++. -....|.+|++.... ... .+........+.|+| +++++++. -.+++|.++++. ++... .
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 98 55554 345679999997755 322 224667789999999 88777554 468899999998 44322 1
Q ss_pred -e--c--cC--CCceEEEEEeeCCCEEEEEe-cCCeEEEEEC--CCCeee
Q 010037 466 -Y--T--DI--REIVSAVCYCPDGKGGIVGT-MTGNCRFYDI--KGMQIF 505 (519)
Q Consensus 466 -~--~--~~--~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl--~~~~l~ 505 (519)
. . .. ......|+++|||++|.++. ..+.|.+|++ .++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT 282 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence 1 1 11 22578899999999988765 4678999999 334443
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=4.5e-07 Score=86.38 Aligned_cols=123 Identities=11% Similarity=0.246 Sum_probs=96.9
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
.++.|.++.|...+ ++..|+..|.|..+|++++ .+...+-|.+.|++++.-..++++|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 45678888888866 9999999999999999875 56777789999999998776788999999999999999987
Q ss_pred CcE---E-eeccCCCceEE--EEEeeCCCEEEEEecCCeEEEEECCCCeeeeccc
Q 010037 461 CQV---V-DYTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST 509 (519)
Q Consensus 461 ~~~---~-~~~~~~~~V~~--v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~ 509 (519)
-++ + ++.+|-..-.- +-..+....+++++.|-..|||.+..+++....+
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 554 3 45555433222 2234555678889999999999999999875433
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.46 E-value=7.4e-07 Score=100.38 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=125.1
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (519)
Q Consensus 280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (519)
++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------------------------------------ 2247 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------------------------------------ 2247 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------------------------------------
Confidence 45566788899989988999999999999999987665432221
Q ss_pred cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEe
Q 010037 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437 (519)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fs 437 (519)
..| ...|+.+.|+.+| .+..+-.||.+.+|.+.. ++.... .|+...+.+.|-
T Consensus 2248 ------------------------t~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2248 ------------------------TAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ------------------------ccC-cchhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeee
Confidence 112 2678888899988 899999999999999883 333333 388888888886
Q ss_pred eCCCCEEEEEe---CCCeEEEEEcCCC--cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 438 PVDDNYFISGS---IDGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 438 p~d~~~l~sgs---~Dg~V~iwd~~~~--~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
. ..+++.+ .++.+.+||..-. .-.....|.+.+++++|-|.-+.|++|+.+|.|++||++..++.+
T Consensus 2302 ~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2302 G---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred e---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 4 5566644 4788999997543 222238899999999999999999999999999999998766543
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=2.7e-06 Score=78.35 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=78.4
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--
Q 010037 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-- 464 (519)
Q Consensus 391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-- 464 (519)
|.+++-+|.. .+++|+.||.|-|||.+.......+ .|+..++.|-|+|.++..|++++.||.+..||..+.-+-
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~ 261 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS 261 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence 8888888866 8889999999999999987443332 299999999999999999999999999999998852211
Q ss_pred -------eeccCCCceEE--------------E-EEeeCCCEEEEEecCCeEEEEE
Q 010037 465 -------DYTDIREIVSA--------------V-CYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 465 -------~~~~~~~~V~~--------------v-~~spdg~~l~sgs~dg~v~iwd 498 (519)
.|. ..+++.+ + .|.--|..|++|+.-+.|++++
T Consensus 262 ~~~s~~s~WL-sgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 262 NQASVISSWL-SGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred Cccccccccc-cCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 010 0111111 1 2333567788888888888775
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=3.7e-05 Score=79.56 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=78.5
Q ss_pred CeeEEEEcCCC-eE-EEEeCC--CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCc
Q 010037 390 EVLDLSWSKNG-FL-LSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQ 462 (519)
Q Consensus 390 ~V~~l~~sp~~-~L-~sgs~D--g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~ 462 (519)
......|+|+| .| ++.+.+ ..|.++|+.++...+...+........|+| |++.|+-.+. .+ .|.++|+.+++
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence 34456799999 44 444433 568888988887655444444455678999 8887766553 23 68888998887
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecC---------CeEEEEECCCCeeeeccc
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKGMQIFDLST 509 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d---------g~v~iwdl~~~~l~~~~~ 509 (519)
.......... ...|+|||+.|+..... ..|.+.|+.++....+..
T Consensus 313 ~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 313 VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 6544332222 24899999998876654 368888998887665543
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=2.5e-05 Score=88.11 Aligned_cols=240 Identities=13% Similarity=0.183 Sum_probs=145.9
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEe----eCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw----~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW 311 (519)
+.+.++.+-++...++.+..+|.|.+. +......+. ...-...|.+++||||+..||..+.+++|.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 455667888899999999999999999 333222221 22346789999999999999999999988876
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE--EeCCccccccccceeEeeccCC
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS 389 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~h~~ 389 (519)
. .+...+........... ....+.+.++++.. .+.|+...... .-++... ......+. +..
T Consensus 148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeT----QF~Gs~gK~aa~~~~~p~~~---~~d~~~~s-~dd 210 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKET----QFHGSAGKAAARQLRDPTVP---KVDEGKLS-WDD 210 (928)
T ss_pred e-ccceEEEEeecCccccC--------CCceeeeccCcccC----ccCcchhhhhhhhccCCCCC---ccccCccc-cCC
Confidence 4 34444443333222111 01112222221111 11111111000 0001100 00011122 445
Q ss_pred CeeEEEEcCCC-eEEEEeC------CCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEc
Q 010037 390 EVLDLSWSKNG-FLLSSSA------DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~------Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~ 458 (519)
.-..|+|-.|| ++++.+. -..+|||+-+ |....+-. -.+--.+++|.| .|+++|+.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 66789999999 8887764 2579999855 55444433 333446789999 9999988764 345777776
Q ss_pred CCCcEEe----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 459 RRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 459 ~~~~~~~----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+.-+.-. +......|..++|++|+..||+...|. |.+|-..+.+
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 5433222 224556799999999999999977654 9999998765
No 289
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=7.8e-05 Score=72.13 Aligned_cols=186 Identities=15% Similarity=0.255 Sum_probs=128.6
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeccc--CeeeceeeccCCCCc
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS 330 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~--~~~~~~~~~~~~~~~ 330 (519)
++-|++|++......++.. .+..+.+.++-|+|+|++++|.++-.+ |.|..|.+.. |.. ..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLN------- 82 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEee-------
Confidence 5679999998666555433 234677888999999999999998655 5566665543 221 0000
Q ss_pred eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe-CC
Q 010037 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD 408 (519)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs-~D 408 (519)
..... ..+...++.++++ +|+++. .-
T Consensus 83 --------------------------------------------------~~~~~--g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 83 --------------------------------------------------RQTLP--GSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred --------------------------------------------------ccccC--CCCCeEEEECCCCCEEEEEEccC
Confidence 00011 2233778899999 666665 45
Q ss_pred CcEEEEECCC-Ce---EEEEecCCCc----------EEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEEe----eccC
Q 010037 409 KTVRLWQVGI-DR---CLRVFSHNNY----------VTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD----YTDI 469 (519)
Q Consensus 409 g~V~lWdl~~-~~---~~~~~~h~~~----------V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~~----~~~~ 469 (519)
+.|.++-++. |. .+..+.|... +....|.| ++++|++... -.+|.+|++..+++.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8899999876 33 3344456555 89999999 9999998775 3479999999876542 2345
Q ss_pred CCceEEEEEeeCCCEEEEEec-CCeEEEEECCC--Ceeee
Q 010037 470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG--MQIFD 506 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~--~~l~~ 506 (519)
......|.|+|+|++..+.+. +++|-+|.... +++-.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 566789999999998776554 88999999876 44433
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=9.7e-07 Score=58.30 Aligned_cols=37 Identities=46% Similarity=0.934 Sum_probs=34.7
Q ss_pred cceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWd 415 (519)
+++..+.+|...|++|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578899999999999999998 999999999999997
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=8.4e-06 Score=86.77 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=135.5
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
++..++.|+-...+..+|+...+.. +...-..+.|.-|+. ++++|.+|...|+|.+-|..+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-------- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-------- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc--------
Confidence 5567777777777888887744321 111112234655554 68899999999999999876554
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEE
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sg 405 (519)
.++++.+|.+.|.++...-+ .|+++
T Consensus 209 ------------------------------------------------------~iht~~aHs~siSDfDv~GN-lLitC 233 (1118)
T KOG1275|consen 209 ------------------------------------------------------TIHTFDAHSGSISDFDVQGN-LLITC 233 (1118)
T ss_pred ------------------------------------------------------eeeeeeccccceeeeeccCC-eEEEe
Confidence 36778889999988876533 78877
Q ss_pred e---------CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE---cCCCc--EEeeccCCC
Q 010037 406 S---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRCQ--VVDYTDIRE 471 (519)
Q Consensus 406 s---------~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd---~~~~~--~~~~~~~~~ 471 (519)
+ .|.-|+|||++.-+.+..+.....-.-+.|+|.-...+++.+..|+..+-| +.+.. +........
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 6 366799999999888777764444577889997778899999999999999 44432 223444555
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.+.+++++++|+.++.|..+|.|.+|--.
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeecCC
Confidence 69999999999999999999999999743
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=2.4e-07 Score=97.63 Aligned_cols=205 Identities=16% Similarity=0.267 Sum_probs=136.5
Q ss_pred ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC
Q 010037 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (519)
Q Consensus 270 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (519)
.++.+...+.|..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|......+.|...++.+.-..++...+....+..
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 34555566778899999999999999999999999999999999999988777777776665554444433332221111
Q ss_pred CceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-c-
Q 010037 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S- 426 (519)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~- 426 (519)
....+|.... ...+.+.|. .-.++.|++.- .-+.|+.-..+.|||+.++.++.++ .
T Consensus 1167 --------------PlsaLW~~~s---~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1167 --------------PLSALWDASS---TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred --------------chHHHhcccc---ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc
Confidence 0111122111 123334433 33567787765 4444555567999999999887773 2
Q ss_pred ---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 427 ---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 427 ---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
.+..-++..|+| +..+++ .||. +||++..+.++..+.-..-..-.|+|.|..++.-+ .|||+++-+
T Consensus 1226 ~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred chhhhhhccccccCC-CcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHH
Confidence 333448899999 666665 3664 79999987664333222333447999999998876 589999876
Q ss_pred eee
Q 010037 504 IFD 506 (519)
Q Consensus 504 l~~ 506 (519)
+..
T Consensus 1295 lLh 1297 (1516)
T KOG1832|consen 1295 LLH 1297 (1516)
T ss_pred HHh
Confidence 543
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.33 E-value=1.9e-06 Score=89.42 Aligned_cols=201 Identities=15% Similarity=0.223 Sum_probs=131.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (519)
Q Consensus 284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (519)
.+++..+..+|.|+-+|.++.-| +.+-|+...-....+- ...-.+....|++........+.....+.. .+.+..+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence 46788899999999999998876 4455654432222211 111122233444444333333333222211 1112222
Q ss_pred CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEe
Q 010037 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFN 437 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fs 437 (519)
.+..+ -..+.+|...|+++.|+|+. .|++++.|..|..||+++. .++..+. -......|+|+
T Consensus 102 s~~aI--------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 102 SSNAI--------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred Cccce--------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 22221 34578999999999999988 9999999999999999985 3444443 44556789999
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCcE-E-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037 438 PVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~ 501 (519)
-.+++.+|+ +....|++||++.+.. + ....|...|+.+.|..- -..+.+.+.||+|++||...
T Consensus 168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 866666655 5567899999998643 3 46667788888888652 24578899999999999864
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.29 E-value=3e-06 Score=78.03 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred CcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEee-CCCE
Q 010037 409 KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGKG 484 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~ 484 (519)
+..+.|+++..+.+..- .....|++++-+|...+++++|+.||.|-+||.++.... .+..|+..|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34556665543322221 133459999999977888999999999999999987544 4788999999999999 6678
Q ss_pred EEEEecCCeEEEEECCC
Q 010037 485 GIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 485 l~sgs~dg~v~iwdl~~ 501 (519)
|++++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999985
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=0.0002 Score=73.81 Aligned_cols=112 Identities=18% Similarity=0.316 Sum_probs=83.5
Q ss_pred CCeeEEEEcCCC--eEEEE----eCCCcE----EEEECCCCeEE----EEecCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 389 SEVLDLSWSKNG--FLLSS----SADKTV----RLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 389 ~~V~~l~~sp~~--~L~sg----s~Dg~V----~lWdl~~~~~~----~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
....++.|+... .+.|. +.+|.+ .+|++..++.. ..+.....|.|.+++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 344667777644 44432 334443 45666554332 2335889999999999 999999999999999
Q ss_pred EEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502 (519)
Q Consensus 455 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~ 502 (519)
+||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 285 LyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876433 3345566889999999999999999999999998744
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=5.6e-05 Score=79.83 Aligned_cols=170 Identities=15% Similarity=0.262 Sum_probs=118.7
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
.+++++.|+-.|.|++.+..... .+...|... ..+|.|++||+.||+|.|-.+.+.+....+.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-- 110 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-- 110 (846)
T ss_pred hcceeeeccccceEEEEecCCcc---------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence 45789999999999999876432 112234433 5689999999999999998887665432221
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC------
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN------ 399 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------ 399 (519)
-..++.+++++|+
T Consensus 111 -------------------------------------------------------------f~rpiksial~Pd~~~~~s 129 (846)
T KOG2066|consen 111 -------------------------------------------------------------FKRPIKSIALHPDFSRQQS 129 (846)
T ss_pred -------------------------------------------------------------cCCcceeEEeccchhhhhh
Confidence 2356788888886
Q ss_pred CeEEEEeCCCcEEEEECC---CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-C----
Q 010037 400 GFLLSSSADKTVRLWQVG---IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-E---- 471 (519)
Q Consensus 400 ~~L~sgs~Dg~V~lWdl~---~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~---- 471 (519)
+.+++|+.-| +.++.-+ ....+..-...++|.++.| .|+++|-++.+| |+|||+.+.+.+...... .
T Consensus 130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~ 204 (846)
T KOG2066|consen 130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP 204 (846)
T ss_pred hheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence 2899999988 7777532 2222222236789999999 578999988776 899999998877432211 1
Q ss_pred --ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 472 --IVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 472 --~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
-...+.|.++.+ |+.|-.| +|+|..++
T Consensus 205 e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 205 ELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred ccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 234678877764 5555544 78888887
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.23 E-value=0.00011 Score=68.24 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=121.3
Q ss_pred EEeeecCCeEEEeeCCccccccccccccceeecCCC--CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (519)
Q Consensus 250 lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~ 327 (519)
+..++.|.++++..+....... .-|.. .+.++.+++|++++++.+....|-.|.+.......
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~------- 194 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI------- 194 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-------
Confidence 4456677888888776433211 12333 37889999999999999999999999875432100
Q ss_pred CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee-EeeccCCCeeEEEEcCCC-eEEEE
Q 010037 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-FLLSS 405 (519)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~L~sg 405 (519)
.. ........-.+..|+... .+|++
T Consensus 195 -----------------------------------------------------~~~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 195 -----------------------------------------------------ENIYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred -----------------------------------------------------eeeEecccCCCceeeeeccCcceEEEE
Confidence 00 111223445677888888 99999
Q ss_pred eCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEeeCCCC--EEEEEeCCCeEEEEEcCCCcEEee--------ccC
Q 010037 406 SADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVDY--------TDI 469 (519)
Q Consensus 406 s~Dg~V~lWdl~~~~~~~~~------~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~iwd~~~~~~~~~--------~~~ 469 (519)
..||++.|||++........ .|++.+..+.|+| .+. +|...-.-+.+.+-|+++.+-.+. ..|
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 99999999999875433222 2899999999998 432 344444457899999998753321 122
Q ss_pred C-CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 470 R-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 470 ~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
. ..|...+|+.++..+.+.+.+ .+.=|++....
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeeccccc
Confidence 2 347888888888777776654 34455554433
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=9.9e-06 Score=77.45 Aligned_cols=152 Identities=15% Similarity=0.226 Sum_probs=105.7
Q ss_pred eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCce
Q 010037 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC 331 (519)
Q Consensus 252 sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 331 (519)
+.+.+..|-+-++..+.. +.|. -.+.|.++.|...++++..|..+|.|...|++....-. .
T Consensus 229 s~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--------~-- 289 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--------G-- 289 (425)
T ss_pred cccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC--------C--
Confidence 334456677777654321 1223 56789999999989999999999999999997652100 0
Q ss_pred EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-CC-eEEEEeCCC
Q 010037 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADK 409 (519)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg 409 (519)
.+.+. --|...|+++..-. ++ +|++.+++|
T Consensus 290 -----------------------------------------------~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g 321 (425)
T KOG2695|consen 290 -----------------------------------------------WCAQR-LYHDSSVTSLQILQFSQQKLMASDMTG 321 (425)
T ss_pred -----------------------------------------------cceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence 00111 12778888888776 44 999999999
Q ss_pred cEEEEECCCCeE---EEEec-CCCcE--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037 410 TVRLWQVGIDRC---LRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (519)
Q Consensus 410 ~V~lWdl~~~~~---~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 471 (519)
+|++||++.-++ +..+. |-..- .-+-.+| ....+++++.|...|||.++.++++.......
T Consensus 322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 999999997777 55553 42221 2233455 56788889999999999999999986554443
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.19 E-value=0.0034 Score=60.20 Aligned_cols=223 Identities=15% Similarity=0.122 Sum_probs=128.9
Q ss_pred eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEecccCee
Q 010037 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
.+|.+ ++.++++-...+.|..|+........ +.. .....+.+. +++. |+.+... .+.++|+.+++.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~~--~~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------IDL--PGPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EES--SSEEEEEEECTTSE-EEEEETT-CEEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Eec--CCCceEEEEccCCE-EEEEEcC-ceEEEecCCCcE
Confidence 57787 77777777788999999987654332 111 126778888 6655 4455554 456669888865
Q ss_pred eceeeccC---CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 319 LDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 319 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
........ ...............++............ ..+.+..++.. .. +..+...-...+.|+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~------~~g~v~~~~~~-~~-----~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI------DPGSVYRIDPD-GK-----VTVVADGLGFPNGIA 140 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG------GSEEEEEEETT-SE-----EEEEEEEESSEEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccc------cccceEEECCC-Ce-----EEEEecCcccccceE
Confidence 54444321 11122222222233333332211110000 00333333333 11 222233345678999
Q ss_pred EcCCC-eE-EEEeCCCcEEEEECCCCe--E--EEEe---cCC-CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 396 WSKNG-FL-LSSSADKTVRLWQVGIDR--C--LRVF---SHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 396 ~sp~~-~L-~sgs~Dg~V~lWdl~~~~--~--~~~~---~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
|+|++ .| ++-+..+.|..+++.... . ...+ ... ...-.+++.. ++++.++....+.|.++|.. ++++.
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 99999 44 567788889999986322 1 1222 222 3588899999 89998888889999999998 77664
Q ss_pred -eccCCCceEEEEEe-eCCCEEEEEe
Q 010037 466 -YTDIREIVSAVCYC-PDGKGGIVGT 489 (519)
Q Consensus 466 -~~~~~~~V~~v~~s-pdg~~l~sgs 489 (519)
.......+++++|. |+.+.|.+.+
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 33333689999994 6766665543
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=8.6e-06 Score=76.75 Aligned_cols=162 Identities=17% Similarity=0.308 Sum_probs=106.5
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (519)
Q Consensus 281 ~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (519)
.+|.--|+++.|+.|...++++ .|-.|.+|++.-.....
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sF---------------------------------------- 207 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSF---------------------------------------- 207 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCce----------------------------------------
Confidence 4677788899999888888776 56788999874322100
Q ss_pred CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE----EEEec--------
Q 010037 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC----LRVFS-------- 426 (519)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~----~~~~~-------- 426 (519)
.++-..+ +.+..-..-|++..|+|.. .+.-.+..|.|++-|++.... .+.+.
T Consensus 208 ----nIVDiKP----------~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 208 ----NIVDIKP----------HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred ----EEEeccC----------ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 0000000 1111223457888899976 677777889999999984321 11221
Q ss_pred -----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EEeec-c------------CCCce---EEEEEeeCCCE
Q 010037 427 -----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYT-D------------IREIV---SAVCYCPDGKG 484 (519)
Q Consensus 427 -----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~~~~-~------------~~~~V---~~v~~spdg~~ 484 (519)
....|..+.|+| +++|+++-+. -+|+|||++..+ ++... - ..+.| ..+.|+-|.+.
T Consensus 274 ~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~ 351 (460)
T COG5170 274 DFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH 351 (460)
T ss_pred hhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc
Confidence 234678899999 9999998765 489999998743 33211 1 12223 34788889999
Q ss_pred EEEEecCCeEEEEEC
Q 010037 485 GIVGTMTGNCRFYDI 499 (519)
Q Consensus 485 l~sgs~dg~v~iwdl 499 (519)
+++|+.....-||-+
T Consensus 352 v~sgsy~NNfgiyp~ 366 (460)
T COG5170 352 VLSGSYSNNFGIYPT 366 (460)
T ss_pred ccccccccceeeecc
Confidence 999999888888864
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.14 E-value=0.00074 Score=69.20 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=125.0
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
++..+++++.+|.+..+|...++..-. ... .+.+.+.-.. .+..++.++.+|.|..||..+++.+..+...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 467788888899999999875553221 111 1122211111 2456777788999999999999877665543
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc-ceeEeeccC-----CCee-EEEEcC
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK-PLHEFQGHS-----SEVL-DLSWSK 398 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~h~-----~~V~-~l~~sp 398 (519)
...... . .....+. .+ . ..+.+..++.+..++......... ......+.. ..+. ...+ .
T Consensus 175 ~~~~~~---~-~~~sp~~---~~-~-----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~ 240 (377)
T TIGR03300 175 TPALTL---R-GSASPVI---AD-G-----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D 240 (377)
T ss_pred CCceee---c-CCCCCEE---EC-C-----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence 221100 0 0000000 00 0 011112222333333222111000 000000000 0000 0111 1
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-cCCC-ceEEE
Q 010037 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE-IVSAV 476 (519)
Q Consensus 399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~-~V~~v 476 (519)
++.++.++.++.+..||..+++.+-....... .... . .+..++.++.+|.|..+|..+++.+... .... ...+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPA--V-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCce--E-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 34788888999999999999987766553221 1222 2 4567888889999999999999877322 2221 22222
Q ss_pred EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.. .+..|++++.+|.|+++|..+++++
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22 4668999999999999999988765
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.13 E-value=0.0007 Score=64.29 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=117.5
Q ss_pred CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEe
Q 010037 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (519)
Q Consensus 256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 335 (519)
+|+|..+|...++..-. .. +..-.....+. ..+++.++++++.++.|..||..+++.+............. .
T Consensus 2 ~g~l~~~d~~tG~~~W~-~~----~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-YD----LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-V- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEE-EE----CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-E-
T ss_pred CCEEEEEECCCCCEEEE-EE----CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-e-
Confidence 57777787754443211 11 11001222222 23356677888899999999999999887776633211111 0
Q ss_pred ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-ecc----C-CCeeEEEEcCCCeEEEEeCCC
Q 010037 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADK 409 (519)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h----~-~~V~~l~~sp~~~L~sgs~Dg 409 (519)
.....++... .++.+..++...... +... ... . .......+. .+.++.+..++
T Consensus 74 -~~~~~v~v~~---------------~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 132 (238)
T PF13360_consen 74 -VDGGRVYVGT---------------SDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSG 132 (238)
T ss_dssp -EETTEEEEEE---------------TTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCS
T ss_pred -eccccccccc---------------ceeeeEecccCCcce----eeeeccccccccccccccCceEe-cCEEEEEeccC
Confidence 0011111111 112333333222111 2211 111 0 111122222 33888888899
Q ss_pred cEEEEECCCCeEEEEecCCC-c----------E-EEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcEEeeccCCCceEEE
Q 010037 410 TVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAV 476 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~-~----------V-~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~~~~~~~~~~V~~v 476 (519)
.|..+|+++|+.+....-.. . + ..+.+. ++ .++.++.++. +.+ |+.+++.+ +......+..
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~- 206 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYS- 206 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECE-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccC-
Confidence 99999999999987775211 1 1 222222 34 6777777775 555 99999977 4333233222
Q ss_pred EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
...+++..|++++.++.+..||+++++..
T Consensus 207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 207 LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 24567788888889999999999999863
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.00019 Score=75.46 Aligned_cols=237 Identities=12% Similarity=0.081 Sum_probs=146.6
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC------C------CEEEEEeCCC
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------G------QYLASGGEDG 306 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~LaSgs~Dg 306 (519)
+++.|+|.| ++|.|+. ..|.|-|.. ..+..+.+..|+..|+.+.|.|- + -.||++...|
T Consensus 19 ~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 346788887 6666654 457777755 44556678889999999999872 1 2577788889
Q ss_pred cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (519)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.|.+||+..+..+..+..+......++|.+..... +...+.......+.+|+..... .+-+...
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S------------rd~LlaIh~ss~lvLwntdtG~----k~Wk~~y 153 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS------------RDVLLAIHGSSTLVLWNTDTGE----KFWKYDY 153 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc------------hheeEEecCCcEEEEEEccCCc----eeecccc
Confidence 99999999998888888888877777776665332 1111222333445555443321 1222233
Q ss_pred cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-------CeEEEEec-CCC-------------------------cE
Q 010037 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-------DRCLRVFS-HNN-------------------------YV 431 (519)
Q Consensus 387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-------~~~~~~~~-h~~-------------------------~V 431 (519)
......|+.+.|-. .+..-+..|.|.+-+.-. ++..+.-. |++ +.
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~ 233 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYC 233 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHH
Confidence 33455667777754 454444555555554321 11111111 211 12
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCC
Q 010037 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~ 501 (519)
..++|+| .-+-++-......+.|+|++-..++. ..-..+.+.-+.+-|+++ .|.+...||.+.||--+.
T Consensus 234 a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 234 AQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 2356788 43333344457789999998877774 333445566677777764 688999999999997654
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=2.5e-06 Score=90.22 Aligned_cols=217 Identities=17% Similarity=0.222 Sum_probs=132.1
Q ss_pred eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--cE
Q 010037 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TV 308 (519)
Q Consensus 231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg--~I 308 (519)
+.-+...-.|++|+-+.++|++|+..|.|+++++..+..+-+ ..+|..+|+-+.-+.+|..+++.+.-. -.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCchH
Confidence 333445556799999999999999999999999987766543 578999999999999998777665432 47
Q ss_pred EEEeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 309 RVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 309 ~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
.+|++.+ +.....+.. -.++.|....... +.+.......+|+..+.....+.+....+.
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r----------------~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFR----------------ALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHH----------------HhcccccceEEEecccCcHHHHhcCcchhh
Confidence 7899854 222222221 1222222221111 112222334444444432222212112222
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 467 (519)
...-++..|+|...|+. +|| .+||++..+.++.|..-..--.=.|+| +++.++..+. |||+++.++++..
T Consensus 1230 ~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred hhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheecccccccC-CCceEEeech-----hhhhHHHHHHhcC
Confidence 33347788999884433 344 589999998888886322333446999 8888888663 8999998776432
Q ss_pred cCCCceEEEEEeeCCCEE
Q 010037 468 DIREIVSAVCYCPDGKGG 485 (519)
Q Consensus 468 ~~~~~V~~v~~spdg~~l 485 (519)
..-+ -..+.|+..|..+
T Consensus 1300 P~Ld-qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1300 PSLD-QCAVTFNSTGDVM 1316 (1516)
T ss_pred cccc-ceEEEeccCccch
Confidence 2211 1456666666543
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=8.3e-05 Score=78.08 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=146.1
Q ss_pred CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEecccCeeecee
Q 010037 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF 322 (519)
Q Consensus 247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~LaSgs~Dg~I~iWd~~~~~~~~~~ 322 (519)
.-+||++...|+|.+||....... ..+..|.++|..++|-+ +. ..|+.-..-.+|.+|+..+|+.....
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 446788889999999998744432 23677899999999977 33 45666666779999999999988888
Q ss_pred eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC---CCeeEEEeCCccccc--cccceeEeeccCC--------
Q 010037 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS---SDLTCVVLPPKVFRL--LEKPLHEFQGHSS-------- 389 (519)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~--~~~~~~~~~~h~~-------- 389 (519)
........|+.+.+-....+......+. ......+..+ ..+....+....-.+ .+....+-..++.
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi 230 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI 230 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence 7777767777666655544443332221 1111111111 011111110000000 0000000000100
Q ss_pred -CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCc---
Q 010037 390 -EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQ--- 462 (519)
Q Consensus 390 -~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~--- 462 (519)
....++|+|.- .++-......+.|+|++-..++.... ..+.+.-+.|-|. ....|.++-.||.+.||-.+...
T Consensus 231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred HHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 01235678865 44445566789999999999998887 5556666777772 23478889999999999765411
Q ss_pred -------------EE---eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCCCeee
Q 010037 463 -------------VV---DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 463 -------------~~---~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.. .... ...+...+..|. ...+++--.+|.+.+|.+++|++-
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred cccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 11 1111 112233344454 344555566888999999977653
No 306
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=1.2e-06 Score=89.74 Aligned_cols=191 Identities=20% Similarity=0.389 Sum_probs=125.9
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEe----CCCcEEEEecccCeeec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD 320 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs----~Dg~I~iWd~~~~~~~~ 320 (519)
+...+++|..+|.|.+-........ ......+|..+.++++|++ |.+.||+|- .|-.+.|||+.++-...
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 3467889999999999887643322 1123457888999999998 666777763 35679999997652100
Q ss_pred eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCC
Q 010037 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKN 399 (519)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~ 399 (519)
.. . +. +. +......+++|..+
T Consensus 144 -----ke---~------------------------------------------------~~--fs~~~l~gqns~cwlrd 165 (783)
T KOG1008|consen 144 -----KE---S------------------------------------------------PL--FSSSTLDGQNSVCWLRD 165 (783)
T ss_pred -----cc---c------------------------------------------------cc--cccccccCccccccccC
Confidence 00 0 00 00 11233447888877
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE-cCCCc-EEe-----eccCCC
Q 010037 400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ-VVD-----YTDIRE 471 (519)
Q Consensus 400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd-~~~~~-~~~-----~~~~~~ 471 (519)
. ++++|...+.++++|++........-....|..+...|..++|+++-. ||.|.+|| .++-+ ++. ......
T Consensus 166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~ 244 (783)
T KOG1008|consen 166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK 244 (783)
T ss_pred cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence 7 778888888999999984433222224557888899998889998876 99999999 44322 221 122233
Q ss_pred ceEEEEEeeCCCE-EEEE-ecCCeEEEEECC
Q 010037 472 IVSAVCYCPDGKG-GIVG-TMTGNCRFYDIK 500 (519)
Q Consensus 472 ~V~~v~~spdg~~-l~sg-s~dg~v~iwdl~ 500 (519)
.+..++|+|.... +++. -..++|++||+.
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5899999995433 3333 445789999986
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.00026 Score=72.93 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=74.3
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-- 462 (519)
.....|.|++++|+. .|+.|+.||.|.+||...+..... ...-..+.++||| +|.+|++|+.-|.|.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 367889999999998 999999999999999987754433 4566789999999 99999999999999999975321
Q ss_pred ------------EEe---eccCCCceEEEEEeeCC
Q 010037 463 ------------VVD---YTDIREIVSAVCYCPDG 482 (519)
Q Consensus 463 ------------~~~---~~~~~~~V~~v~~spdg 482 (519)
.+. +..+...+..+.|.+..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 111 23345556778888543
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0015 Score=69.94 Aligned_cols=202 Identities=15% Similarity=0.228 Sum_probs=116.5
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCc-----EEEEecc
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT-----VRVWKVI 314 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~-----I~iWd~~ 314 (519)
-++++++..++.|+.+|.|.+.+-. +...+.+++|...|...-|.-++ .+|++.++|+. |+||++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 3688999999999999999888743 22224567777774333344444 78999888765 8999986
Q ss_pred cCeeeceeeccCCCCceE---EEee----cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 315 EHERLDGFDVQDTDPSCL---YFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
.-+.- ..+.|+ ...+ ........+.+... ....+.|-.++.+..+.....+-.+.........
T Consensus 101 k~~~n-------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 101 KVDKN-------NSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred ccCCC-------CCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 43210 001111 0000 01111111111111 1122233445555555444443333333333445
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
..+|+.+++..++ .++-...-..|.+|.+....+ +.++. |...++|..|++ ....|++++ +.-|.+|+.....
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-CceEEEEcCCCcc
Confidence 6799999999888 323233345799999985553 33344 788999999998 444344444 3469999987544
No 309
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.87 E-value=0.014 Score=58.59 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=43.1
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEecccCeeeceeeccC
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDVQD 326 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~----------Dg~I~iWd~~~~~~~~~~~~~~ 326 (519)
++|.|.|....+.. ..+..-..+- .+ ++|||+.|+.+.. +..|.+||+.+.+....+..+.
T Consensus 27 ~~v~ViD~~~~~v~-------g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVL-------GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEE-------EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 88999998753321 1222222222 24 9999998877655 7899999999999988887654
Q ss_pred C
Q 010037 327 T 327 (519)
Q Consensus 327 ~ 327 (519)
.
T Consensus 98 ~ 98 (352)
T TIGR02658 98 G 98 (352)
T ss_pred C
Confidence 4
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.87 E-value=0.0024 Score=60.32 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=103.3
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCC------CEEEEEeCCCcEEEEec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV 313 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg------~~LaSgs~Dg~I~iWd~ 313 (519)
++|+||+.+||.+...|+|+|+|+.....- .+.....+ ..-..+|-.|.|.+.. ..|+.-...|.++-|-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 699999999999999999999998753321 11111111 1234678888886532 24666778888888876
Q ss_pred ccC-----eeeceeecc---CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037 314 IEH-----ERLDGFDVQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (519)
Q Consensus 314 ~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (519)
..+ +....+... ...+..+.+.+.+.-.++.. ..... ... -.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG-~~~~~-~~~----------------------------s~ 176 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG-CEQNQ-DGM----------------------------SK 176 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec-cCCCC-Ccc----------------------------cc
Confidence 432 222233322 22333444444432111111 00000 000 00
Q ss_pred ccCCCeeEEEEcCCC---eEEEEeCCCc------EEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037 386 GHSSEVLDLSWSKNG---FLLSSSADKT------VRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~---~L~sgs~Dg~------V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i 455 (519)
+....+++-..-.+. ..++...|+. -.+|.+-+.+.... -.....|..+..+| |+..||+...+|.|.+
T Consensus 177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL 255 (282)
T ss_pred ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence 111122222222221 3333333322 23444332222111 12567899999999 9999999999999999
Q ss_pred EEcCCCcEE
Q 010037 456 WEVRRCQVV 464 (519)
Q Consensus 456 wd~~~~~~~ 464 (519)
|++.+-++.
T Consensus 256 W~iPsL~~~ 264 (282)
T PF15492_consen 256 WEIPSLRLQ 264 (282)
T ss_pred EecCcchhh
Confidence 999886655
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00057 Score=66.96 Aligned_cols=243 Identities=12% Similarity=0.105 Sum_probs=127.6
Q ss_pred EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 010037 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW 311 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iW 311 (519)
+-..+..++|+|... ++..++.+..|+|.|+..... ...+..| ..|++++|.-|. ++|..|-.+|.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEeccccee-------eeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 334556689999988 778899999999999985443 2345666 789999998865 578888899999999
Q ss_pred ecccCeeec-eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc---ccceeEe-ec
Q 010037 312 KVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEF-QG 386 (519)
Q Consensus 312 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~-~~ 386 (519)
|++..+-.. .+.............+-..+.++.. +... .........|.+. +.+...+ .+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~----gglL-----------v~~lt~l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTS----GGLL-----------VFALTVLQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccc----cceE-----------EeeehhhhhhhhhccccCCCcccccC
Confidence 997654321 1211111111111111111111100 0000 0000000011110 0111111 12
Q ss_pred cCCCeeEEEEcCCC--eEEEEeCCCc---EE---E-EECCCCeEEEEec--C-CCc-----EEEEEEeeCCCCEEE-EEe
Q 010037 387 HSSEVLDLSWSKNG--FLLSSSADKT---VR---L-WQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFI-SGS 448 (519)
Q Consensus 387 h~~~V~~l~~sp~~--~L~sgs~Dg~---V~---l-Wdl~~~~~~~~~~--h-~~~-----V~~v~fsp~d~~~l~-sgs 448 (519)
..+...++++++.. .|+|.-.+.+ ++ . -|-..|.++.... + ..+ -+...+.+.+.++++ .|.
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 34555666666643 4444332211 11 1 0111222221111 1 111 111223332445554 444
Q ss_pred CCCeEEEEEcCCCcEEeeccCCCceEEEEEee-CC-CEEEEEecCCeEEEEECC
Q 010037 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DG-KGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 449 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg-~~l~sgs~dg~v~iwdl~ 500 (519)
.-..+.+||..+..+++......+|..++... +| .+|++-+ |..++||..+
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 56789999999999998888889999988765 33 3555544 6688998754
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.83 E-value=0.003 Score=64.68 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=123.9
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
.+..+++++.+|.|..+|...++..-. ......+ .. ... .++..++.++.+|.+..+|..+++.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~~~---~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDERL---SG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeee-ecCCCCc---cc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 466888888899999999775553211 1111001 11 112 24667888889999999999999877655433
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe-----eEEEEcCCC
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG 400 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-----~~l~~sp~~ 400 (519)
......... ... ..+....++.+..++...... +-.+......+ ...... ++
T Consensus 135 ~~~~~~p~v-------------~~~-----~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 135 SEVLSPPLV-------------ANG-----LVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG 191 (377)
T ss_pred ceeecCCEE-------------ECC-----EEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence 211000000 000 011122334444444433221 11111110000 011111 34
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCCC-----c---EEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----Y---VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~-----~---V~~v~fsp-~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 471 (519)
.++.+..++.+..+|+.+++.+-...... . ...+.-+| ..+..++.++.+|.++.||..+++.+.......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~ 271 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS 271 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence 77888889999999999998765443110 0 00111111 134577888889999999999998774332221
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.... ..++..+++++.+|.+..+|..+++++
T Consensus 272 -~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 272 -YQGP--AVDDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred -ccCc--eEeCCEEEEECCCCeEEEEECCCCcEE
Confidence 1122 235667888889999999999888643
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.79 E-value=0.0081 Score=57.53 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=114.6
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037 289 TMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (519)
Q Consensus 289 ~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 367 (519)
++.|.+ ++.++++--..+.|..|+..++.... +.... +..+.+.... ..++....... .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~~----------------~ 63 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGGI----------------A 63 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTCE----------------E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCce----------------E
Confidence 568888 77777777778999999998776432 22222 3333333222 22222221111 1
Q ss_pred EeCCccccccccceeEee--c-cCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECCCCeEEEEecCCCcEEEEE
Q 010037 368 VLPPKVFRLLEKPLHEFQ--G-HSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (519)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~--~-h~~~V~~l~~sp~~-~L~sgs~D--------g~V~lWdl~~~~~~~~~~h~~~V~~v~ 435 (519)
+++.....+ +.+.... . .....+++++.|+| +.++.... +.|..++.. ++.......-...+.|+
T Consensus 64 ~~d~~~g~~--~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 64 VVDPDTGKV--TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIA 140 (246)
T ss_dssp EEETTTTEE--EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEE
T ss_pred EEecCCCcE--EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceE
Confidence 111111110 1122221 1 34578899999999 55554433 457777777 66655555666789999
Q ss_pred EeeCCCCEEE-EEeCCCeEEEEEcCCCc--EE------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 436 FNPVDDNYFI-SGSIDGKVRIWEVRRCQ--VV------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 436 fsp~d~~~l~-sgs~Dg~V~iwd~~~~~--~~------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
|+| +++.|+ +-+..+.|..+++.... +. .........-.+++..+|++.++....+.|.+++.. ++++
T Consensus 141 ~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 141 FSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred ECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 999 887665 66678899999986322 21 122222347889999999988887789999999998 5443
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.5e-05 Score=73.89 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=80.4
Q ss_pred eCCCcEEEEECCCCeEE-EEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC------CcE----------Eee
Q 010037 406 SADKTVRLWQVGIDRCL-RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------CQV----------VDY 466 (519)
Q Consensus 406 s~Dg~V~lWdl~~~~~~-~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~------~~~----------~~~ 466 (519)
-.++.+.++|-....+. ..+. |..+|.++.++| -+..+++....|.|.-|.... ..+ ..+
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 35688999987765533 2332 999999999999 888999999999999998873 111 123
Q ss_pred ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.......+++.|+|+|..+.+-..|..|++++++++++.+.
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 34556789999999999999999999999999999998764
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.78 E-value=0.0016 Score=72.14 Aligned_cols=240 Identities=12% Similarity=0.146 Sum_probs=135.8
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
+.+.++.|.-++..++.+...|.|.+-|......+.. ..-...|.+++||||+..++-.+..+++.+-.- +
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMTK-D 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEec-c
Confidence 4566778888999999999999999997665443322 224678999999999999998888777765432 2
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
-..+........ ....+....+.+.... ..+.++...... +......+..... .-...=+.|+
T Consensus 140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrke----Tqfrgs~gr~~~----~~~~~~ek~~~~~-~~~~~~~~Is 202 (1265)
T KOG1920|consen 140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKE----TQFRGSEGRQAA----RQKIEKEKALEQI-EQDDHKTSIS 202 (1265)
T ss_pred ccchhccccccc--------cccccccceecccccc----eeeecchhhhcc----cccccccccccch-hhccCCceEE
Confidence 221111111000 0000111111111100 001111000000 0000000000000 0112235689
Q ss_pred EcCCC-eEEEEe----CC-CcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCc---
Q 010037 396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ--- 462 (519)
Q Consensus 396 ~sp~~-~L~sgs----~D-g~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~~--- 462 (519)
|--+| ++++.. .+ +.|+|||-+ +..-.+- +..+.-.+++|-| .|..+++-. .|+.|.++..+.-+
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 99999 777632 33 899999977 3322221 1334457899999 888888743 35679999865422
Q ss_pred EE-eeccCCCceEEEEEeeCCCEEEE---EecCCeEEEEECCCCe
Q 010037 463 VV-DYTDIREIVSAVCYCPDGKGGIV---GTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~l~s---gs~dg~v~iwdl~~~~ 503 (519)
.. .+......|..++|+.++..|++ ......|++|-+.+..
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22 23333344999999999999988 4444459999998764
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00054 Score=72.61 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=85.3
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCeEEEEEcC---CCcEEeeccCC
Q 010037 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR 470 (519)
Q Consensus 399 ~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~iwd~~---~~~~~~~~~~~ 470 (519)
.| ++++|+.||+|.|-.+-+.+...++....++.+|+++|. ..+.+++|+.-| +.++.-+ +...+......
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 46 999999999999999999998888888899999999993 256899999888 8777643 23334566778
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
++|.+++| .|+++|-++.+| |+|||+.+.+.+.
T Consensus 161 G~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 161 GPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred cceEEEEe--cCcEEEEecCCC-cEEEeccccceee
Confidence 89999999 567888888776 7999999877654
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00038 Score=73.90 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=59.3
Q ss_pred cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (519)
Q Consensus 239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~ 316 (519)
.+++|||..-.|+.|-..|.+.||....... .+ ....|+.+|..+.||++|..|+|+..-|.|.+|....-
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~--ht-----v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTET--HT-----VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCcee--ee-----eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 3589999999999999999999998764332 11 12459999999999999999999999999999998643
No 318
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0036 Score=51.06 Aligned_cols=99 Identities=21% Similarity=0.310 Sum_probs=71.4
Q ss_pred eeEEEEcC---CC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 391 V~~l~~sp---~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
|++|++.. +| .|+.|+.|..||+|+ ....+..+.-...|++++-.. ...|+.+..+|+|-+|+-.. ++-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc-eeee
Confidence 45555543 55 999999999999997 457888888888899998876 47899999999999997632 2222
Q ss_pred eccCCCceEEEEEee-CC---CEEEEEecCCeEE
Q 010037 466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR 495 (519)
Q Consensus 466 ~~~~~~~V~~v~~sp-dg---~~l~sgs~dg~v~ 495 (519)
.. .+..++++++.. +| .-|++|-.+|.|-
T Consensus 77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 333466665543 33 3589999999874
No 319
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.66 E-value=0.0067 Score=62.07 Aligned_cols=251 Identities=12% Similarity=0.140 Sum_probs=124.5
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCcccccc-----cc-------------------------------ccccceee
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SS-------------------------------LYTGQEFL 281 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~-----~~-------------------------------~~~~~~l~ 281 (519)
+..+.|.++..-|++|...|.|.||.+...+..- .. +....-+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4567899999999999999999999776432111 00 00001234
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC--------CCCceEEEeecCCCCeEEeeccCCcee
Q 010037 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID 353 (519)
Q Consensus 282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (519)
...++|++++.|.-| ++|.|.++|.+.|.|++....+..-...+ ..++++.|.. +....+...
T Consensus 84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v--------m~~~~D~yS 154 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV--------MTLGGDGYS 154 (395)
T ss_dssp --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE--------EE-TTSSSE
T ss_pred ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE--------EecCCCccc
Confidence 567999999998544 89999999999999998888776644433 1222333321 222222223
Q ss_pred eeeeeccCCCeeEEEeCCcc---ccccccceeEeeccCCCeeEEE-EcC-----------------CC----eEEEEeCC
Q 010037 354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLS-WSK-----------------NG----FLLSSSAD 408 (519)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~-~sp-----------------~~----~L~sgs~D 408 (519)
....+.++..+.+.++.... ....-........+.+.|..|. ++. .+ .++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 33333333334443332210 0000011111123334444333 211 11 23444457
Q ss_pred CcEEEEECCCCeEEEEec-CCCcEEEEEEee----CCCCEEEEEeCCCeEEEEEcCCCcEEeeccC-----CCceEEEEE
Q 010037 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY 478 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp----~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----~~~V~~v~~ 478 (519)
..+|++...+.+..+..- ..-.+..+.+-+ ..+..|++-..+|.|++|.+..-+.+..... ...+...++
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 789999998877655443 223344445521 1567888889999999999998766632221 123455677
Q ss_pred eeCCCEEEEEecCCeEEEEE
Q 010037 479 CPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwd 498 (519)
+++|..++..+.. .+.++.
T Consensus 315 s~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 315 SRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp -TTS-EEEE-SSS-EEEEEE
T ss_pred CCCCCEEEEeCcc-cEEEEE
Confidence 8999877666543 333333
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.62 E-value=0.003 Score=59.85 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=75.0
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-cc-C---CCc
Q 010037 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TD-I---REI 472 (519)
Q Consensus 398 p~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~-~---~~~ 472 (519)
.++.+++++.++.|..||..+++.+..+.....+..... . .+..++.++.++.|+.+|..+++++.. .. . ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 445888889999999999999998877763332222122 2 456677777888999999999998843 11 1 112
Q ss_pred eEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
........++..++++..+|.|..+|+++|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 23344444588899999999999999999987
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.62 E-value=0.00044 Score=74.15 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=104.7
Q ss_pred eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEe
Q 010037 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK 312 (519)
Q Consensus 242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---------Dg~I~iWd 312 (519)
-...+++.+.+|...|+|.+.|.. .....+++.+|++.|..+.. .|+.|+|||. |.-|+|||
T Consensus 182 imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred EEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 345678899999999999999977 45566789999999987665 5889999985 55678888
Q ss_pred cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (519)
++..+.+.-+.. +.+ ..
T Consensus 253 LRmmral~PI~~--------------------------------------------------------------~~~-P~ 269 (1118)
T KOG1275|consen 253 LRMMRALSPIQF--------------------------------------------------------------PYG-PQ 269 (1118)
T ss_pred hhhhhccCCccc--------------------------------------------------------------ccC-ch
Confidence 876554322211 111 13
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEE---CCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 393 DLSWSKNG--FLLSSSADKTVRLWQ---VGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 393 ~l~~sp~~--~L~sgs~Dg~V~lWd---l~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
-+.|+|.- .++.++..|...+-| +.... ..........+..+.+++ +++.++.|..+|.|.+|--
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence 34566754 788888889999888 33321 122223556699999999 9999999999999999973
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.018 Score=54.92 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=100.4
Q ss_pred eeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCC-ceeee
Q 010037 279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKE-KIDKT 355 (519)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 355 (519)
.+.+-...+..|+|+|+.+ ++++....+.|...+. +|+.+..+.... .....+.+..+. . +.+.-+.. .....
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~-~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--R-YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--E-EEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--E-EEEEEcCCCcEEEE
Confidence 3445556699999999765 5556667788888886 577777776543 233344443221 1 11111111 11111
Q ss_pred eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEec-----
Q 010037 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS----- 426 (519)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~---~~~~~~~~----- 426 (519)
..-.......... ...-.+.....++..+-.++|.|.+ .|+.+-...-.+||.++. ...+....
T Consensus 92 ~~~~~~~~~~~~~-------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 92 TIDDDTTSLDRAD-------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EE----TT--EEE-------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEeccccccchhh-------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 1000000000000 0000001112356678999999987 777777777777887764 22222221
Q ss_pred ----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC----------CceEEEEEeeCCCEEEEEecCC
Q 010037 427 ----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTG 492 (519)
Q Consensus 427 ----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~----------~~V~~v~~spdg~~l~sgs~dg 492 (519)
.-..+.+++++|..+++++.......|.++| .+++++...... ...-.|+|.++|++.+++ .-+
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpN 242 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPN 242 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCc
Confidence 3456889999998888888888899999999 667666422211 246789999999765554 444
Q ss_pred eEEEE
Q 010037 493 NCRFY 497 (519)
Q Consensus 493 ~v~iw 497 (519)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 323
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.52 E-value=0.003 Score=65.56 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=42.0
Q ss_pred cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE-EEEEeeC-CCEEEE
Q 010037 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPD-GKGGIV 487 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spd-g~~l~s 487 (519)
.|.+||+.+++.++.+.... |..|.|++ ++.+++..+.+ .+.|++.+...... .....+. +++.-.. ...+-+
T Consensus 127 ~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~~~E~~~~IkS 201 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFELIHEISERIKS 201 (443)
T ss_dssp EEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEEEEEE-S--SE
T ss_pred CEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEEEEEecceeEE
Confidence 67777777777777766443 67777776 66666666543 56666654333333 1122222 4444444 556666
Q ss_pred EecCCeEEEEECCC
Q 010037 488 GTMTGNCRFYDIKG 501 (519)
Q Consensus 488 gs~dg~v~iwdl~~ 501 (519)
|.+++.+.||...+
T Consensus 202 g~W~~d~fiYtT~~ 215 (443)
T PF04053_consen 202 GCWVEDCFIYTTSN 215 (443)
T ss_dssp EEEETTEEEEE-TT
T ss_pred EEEEcCEEEEEcCC
Confidence 67777777776655
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.024 Score=58.00 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=84.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec-eeeccCCCCc-eEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (519)
Q Consensus 286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (519)
.|..|.|+++..-|+.|...|.|.||.+..++... .-........ +-.-..+....+..+.... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~-----------~-- 69 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA-----------P-- 69 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC-----------C--
Confidence 58899999998999999999999999987654322 0000000000 0000000011111110000 0
Q ss_pred eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEE
Q 010037 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV 434 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v 434 (519)
......-.|...++...++|++++.+.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 70 --------~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 70 --------PSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp --------TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred --------cccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 0000011345556667899999999988899999999999999999988877632 34578889
Q ss_pred EEeeC----CC---CEEEEEeCCCeEEEEEc
Q 010037 435 AFNPV----DD---NYFISGSIDGKVRIWEV 458 (519)
Q Consensus 435 ~fsp~----d~---~~l~sgs~Dg~V~iwd~ 458 (519)
.|... |+ -++++|...|.+.+|.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 88731 22 36788888888888865
No 325
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0014 Score=66.81 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=70.5
Q ss_pred CeeEEEEcCCC-eEEEEe-----------CCCcEEEEECCCCeEEEEecC--C-CcE-EEEEEeeCCCCEEEEEeCCCeE
Q 010037 390 EVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSH--N-NYV-TSVAFNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs-----------~Dg~V~lWdl~~~~~~~~~~h--~-~~V-~~v~fsp~d~~~l~sgs~Dg~V 453 (519)
.|.-+.|||+. +|+|=+ ....++|||+.+|...+.|.. . ..+ .-+.|+. |+.|+|--.. ..|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceE
Confidence 46677888887 888754 226799999999999988862 2 222 3467898 8999987665 579
Q ss_pred EEEEcCCCcEEeec-cCCCceEEEEEeeCCCEEEE
Q 010037 454 RIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIV 487 (519)
Q Consensus 454 ~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~s 487 (519)
.||+..+..++... -....|....|+|.++.||-
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999886666432 23456888899998887765
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.44 E-value=0.054 Score=55.83 Aligned_cols=231 Identities=7% Similarity=0.037 Sum_probs=120.2
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEE-EEEccCCCEEEEEeCCCcEEEEecccCeeeceeec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~ 324 (519)
.+..++.++.+|.+..+|...++..-. ... .+.+.+ ... .+..++.+..++.|..+|..+++.+.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQ-TKV-------AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCccc-ccC-------CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 355677788899999999876554221 111 111111 111 234566777899999999999998776654
Q ss_pred cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc-ceeEee-ccC-CCeeEEEEcC---
Q 010037 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK-PLHEFQ-GHS-SEVLDLSWSK--- 398 (519)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~-~h~-~~V~~l~~sp--- 398 (519)
....... . .....++. . + ..+....++.+..++........+ .+.... .+. .....+.-+|
T Consensus 189 ~~~~~~~---~-~~~sP~v~---~-~-----~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 189 DVPSLTL---R-GESAPATA---F-G-----GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CCCcccc---c-CCCCCEEE---C-C-----EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 3111000 0 00000000 0 0 001111122222222211111000 000000 000 0000111122
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-cCC-CceEEE
Q 010037 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIR-EIVSAV 476 (519)
Q Consensus 399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~-~~V~~v 476 (519)
++.++.++.++.+..+|+.+++.+-....... ..+.. .+..++.++.+|.|..+|..+++.+-.. ... ....+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 44777788899999999999987755542221 12222 4567777888999999999999876321 111 112222
Q ss_pred EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.. .+..|++++.+|.+++.|..+++++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22 2456888999999999999998865
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.42 E-value=0.11 Score=50.52 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=131.1
Q ss_pred EEEEEcc-CCCEEEEEeCCCc-EEEEecccCeeeceeeccCCCCc--eEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037 288 LTMKFSL-DGQYLASGGEDGT-VRVWKVIEHERLDGFDVQDTDPS--CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (519)
Q Consensus 288 ~~l~fsp-dg~~LaSgs~Dg~-I~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (519)
..++.+| .+..++.+-.-|+ ..+||..+++....+........ .-.|+++. ........-.....
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-----------~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-----------RLLYTTENDYETGR 76 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-----------CEEEEeccccCCCc
Confidence 4577888 4556666666654 67899999988776654333211 11222222 11112222234456
Q ss_pred eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE------------------eCCCcEEEEECCCCeEEEE
Q 010037 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS------------------SADKTVRLWQVGIDRCLRV 424 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg------------------s~Dg~V~lWdl~~~~~~~~ 424 (519)
+.+-+|+... ....+.++..|.-....+.+.|+| .|+.+ +++..+.+.|..+++.+..
T Consensus 77 G~IgVyd~~~---~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 77 GVIGVYDAAR---GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred EEEEEEECcC---CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 6666776651 123366677777777888899998 66654 2445677778888988876
Q ss_pred ec-----CCCcEEEEEEeeCCCCEEEEEeCCCe-------EEEEEcCCC-cEE-----eeccCCCceEEEEEeeCCCEEE
Q 010037 425 FS-----HNNYVTSVAFNPVDDNYFISGSIDGK-------VRIWEVRRC-QVV-----DYTDIREIVSAVCYCPDGKGGI 486 (519)
Q Consensus 425 ~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~-------V~iwd~~~~-~~~-----~~~~~~~~V~~v~~spdg~~l~ 486 (519)
.. |...|..+++.+ ++..++..-..|. |-+++.... +.+ .+....+.+-+|+++++|..++
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred eecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 42 667899999998 7766665544332 444444332 111 1345678899999999999887
Q ss_pred EEec-CCeEEEEECCCCeeeecc
Q 010037 487 VGTM-TGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 487 sgs~-dg~v~iwdl~~~~l~~~~ 508 (519)
+.+- -|.+.+||..++.++...
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EECCCCCEEEEEECCCCCEeecc
Confidence 7665 567999999999887654
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00035 Score=68.41 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=72.6
Q ss_pred eeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
...+.+|...|.+|+|+|.. +|..++.+.+|+|.|+++..++..+.....+++++|.-++.+++..|-..|.|.|||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 33567788999999999976 7899999999999999999999999867999999999977888999999999999999
Q ss_pred CCC
Q 010037 459 RRC 461 (519)
Q Consensus 459 ~~~ 461 (519)
+..
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 874
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.37 E-value=0.16 Score=49.36 Aligned_cols=234 Identities=11% Similarity=0.074 Sum_probs=123.8
Q ss_pred cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (519)
Q Consensus 244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~ 323 (519)
...++.|+.|+.+| |.+++........ -..+..+|..|...|+-+.|+.-+ |+.+.++++..-.......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~--------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT--------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccce--------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 34678999999999 8888882211111 112334499999999888777665 5999999987655433111
Q ss_pred ------------ccCCCCceEEEe--ecCCC-CeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cceeEeecc
Q 010037 324 ------------VQDTDPSCLYFT--INHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGH 387 (519)
Q Consensus 324 ------------~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h 387 (519)
.......+..+. ..... ....+.. .....++.|.... ... +..+++. -
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-------------kk~i~i~~~~~~~--~~f~~~~ke~~-l 137 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-------------KKKILIYEWNDPR--NSFSKLLKEIS-L 137 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEE-------------CCEEEEEEEECCc--ccccceeEEEE-c
Confidence 001111122222 11111 1111111 1111222222210 011 2233333 2
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecC-------------CCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h-------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
...+.+++|.++ .|+.|.. +...+.|+.++.....+.. ..++..+... ++.+|++- |..-.
T Consensus 138 p~~~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 138 PDPPSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGV 211 (275)
T ss_pred CCCcEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEE
Confidence 478899999944 6666654 4588899998776655531 1233333333 35555543 33333
Q ss_pred EEEcCCC----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccccceeEE
Q 010037 455 IWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFA 515 (519)
Q Consensus 455 iwd~~~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~~ 515 (519)
+.|.... ..+.|. ..+.++++. ..+|++.+. +.|.||++.+++++|.-..+.+..
T Consensus 212 fv~~~G~~~r~~~i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred EEcCCCCcCcccEEEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCCEEE
Confidence 3444332 222343 345566663 346766655 569999999999988755554443
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.37 E-value=0.069 Score=52.63 Aligned_cols=247 Identities=14% Similarity=0.148 Sum_probs=129.2
Q ss_pred eeecCCCCeEEe----------eecCCeEEEeeCCccccccccccccc-eeecCCCCEEEEEEccCCCEEEEEe--CCCc
Q 010037 241 ATLKPGDHELTL----------GQRMRRVRVHPVKKQSRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLASGG--EDGT 307 (519)
Q Consensus 241 ~~~sp~g~~las----------gs~dg~I~vw~~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~LaSgs--~Dg~ 307 (519)
+.++|+++.+++ |-..-.|.+||.........-....+ .+. .--..+.+.++.||++++..- ---.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecccccceEEccCCcEEEEEccCCCCe
Confidence 678999998875 44556799999885432111000000 000 001223458889999887753 3457
Q ss_pred EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (519)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (519)
|.|-|+..++.+..+..+. |....+.....+..+..++. ..... +.. ++.... +.-..|..-
T Consensus 120 VtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGs-l~~v~-Ld~--~Gk~~~----------~~t~~F~~~ 181 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGS-LLTVT-LDA--DGKEAQ----------KSTKVFDPD 181 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSC-EEEEE-ETS--TSSEEE----------EEEEESSTT
T ss_pred EEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCc-eEEEE-ECC--CCCEeE----------eeccccCCC
Confidence 9999999988877776533 44333333333322222211 11111 110 000000 000111111
Q ss_pred CCCee-EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Eec-----------CCCcEEEEEEeeCCCCEEEEEe--CC
Q 010037 388 SSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFS-----------HNNYVTSVAFNPVDDNYFISGS--ID 450 (519)
Q Consensus 388 ~~~V~-~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~-----------h~~~V~~v~fsp~d~~~l~sgs--~D 450 (519)
..++. .-++...+ .++--+..|.|+--|+....... .+. -.+.-.-+++++..+++++.-- .+
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 12221 22344443 56667888888888887664322 221 1122344677763333333211 11
Q ss_pred C-------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEE-ecCCeEEEEECCCCeeee
Q 010037 451 G-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVG-TMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 451 g-------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sg-s~dg~v~iwdl~~~~l~~ 506 (519)
+ .|.++|+.+++.+........+.+|+.+.|.+ +|++. ..++.+.+||..+++++.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1 48888999999997666667788999999876 55444 457899999999998765
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.00086 Score=70.23 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=112.8
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCC
Q 010037 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (519)
Q Consensus 283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (519)
|...|.--++...++||+.|+.-|.+.+|+-..+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~----------------------------------------- 70 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL----------------------------------------- 70 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------------------------------------
Confidence 444555556777899999999999999999766553210
Q ss_pred CeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee-----cCCCcEEEE
Q 010037 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-----SHNNYVTSV 434 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~-----~h~~~V~~v 434 (519)
+..+-.+.+..+..+++. +++.|+..|.|.++.++...+-. .+ .|+..|+|+
T Consensus 71 --------------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal 130 (726)
T KOG3621|consen 71 --------------------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL 130 (726)
T ss_pred --------------------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence 111123445566677777 78888899999999887643221 11 278899999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEcCCCc-----EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccc
Q 010037 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST 509 (519)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~ 509 (519)
+|++ ++..+++|..-|+|..-.+.... ..........|-.+.+... +|++++.. .+.++++...+++|+.+
T Consensus 131 ~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl~-r~~Lc~tE~eti~QIG~ 206 (726)
T KOG3621|consen 131 EWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTLT-RCILCQTEAETITQIGK 206 (726)
T ss_pred Eecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--eehHhhhh-hhheeecchhHHHHhcC
Confidence 9999 99999999999999998887732 2234445566766666432 44444433 45678888777777765
Q ss_pred cc
Q 010037 510 TA 511 (519)
Q Consensus 510 ~~ 511 (519)
++
T Consensus 207 k~ 208 (726)
T KOG3621|consen 207 KP 208 (726)
T ss_pred CC
Confidence 54
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.001 Score=68.96 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
...|.-+.|+|.- ++|++..+|.|.+..++ .+.+.++. ++..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457788999988 99999999999999998 66777777 777777 999999 8999999999999999999998877
Q ss_pred ee--ccCCCceEEEEEee
Q 010037 465 DY--TDIREIVSAVCYCP 480 (519)
Q Consensus 465 ~~--~~~~~~V~~v~~sp 480 (519)
.- ......|+++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 43 44556677777753
No 333
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.33 E-value=0.00047 Score=43.58 Aligned_cols=35 Identities=40% Similarity=0.904 Sum_probs=31.6
Q ss_pred ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
..+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34667899999999999999999999999999996
No 334
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.013 Score=55.40 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=121.2
Q ss_pred eeecCCCCeEEeeec-----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE-ecc
Q 010037 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW-KVI 314 (519)
Q Consensus 241 ~~~sp~g~~lasgs~-----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW-d~~ 314 (519)
-.|+|||.+|.+.-. -|.|-|||....- ...-++..|--.-..|.|.+||+.|+.+ +|-|..- |..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~f------qrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfg 190 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGF------QRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFG 190 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccccc------ceecccccCCcCcceeEEecCCcEEEEe--CCceecccccC
Confidence 489999999987433 3789999987432 2334566777777889999999988876 4556655 332
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
.-+ +++..-.++.+ +.+....++.+|....-..+.-.|..+
T Consensus 191 R~~----lNldsMePSlv-----------------------------------lld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 191 RTE----LNLDSMEPSLV-----------------------------------LLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ccc----cchhhcCccEE-----------------------------------EEeccccchhhhccCchhhhhcceeee
Confidence 111 11111111111 111111111122111112355667888
Q ss_pred EEcCCCeEEEEe-C-----CCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 395 SWSKNGFLLSSS-A-----DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 395 ~~sp~~~L~sgs-~-----Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
+..++|.+..|+ . |---.+=....++.+..+. ...+|-+|+.+..++-..++.-..+...|||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 888888444443 1 2112222233445554443 4568899999984444444555566789999999
Q ss_pred CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
+.++......+ +.-.-+....+++.+.+|.|.+|.-
T Consensus 312 G~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 312 GAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CcEEecccccc---cccceeccCceEEecCCceEEeccc
Confidence 99986443322 2223345566888888999998854
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.32 E-value=0.016 Score=61.53 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=70.7
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE------------EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC------------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~------------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (519)
......++++|+| .++++..+.+|.|.|+.+.+. .....-...-...+|.+ +++.+.+-..|..|
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv 398 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQI 398 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeeccee
Confidence 4567789999999 455566799999999987552 33334444456678998 88888899999999
Q ss_pred EEEEcCC----------CcEEeeccCCCceEEEE------EeeCCCEEEEEec
Q 010037 454 RIWEVRR----------CQVVDYTDIREIVSAVC------YCPDGKGGIVGTM 490 (519)
Q Consensus 454 ~iwd~~~----------~~~~~~~~~~~~V~~v~------~spdg~~l~sgs~ 490 (519)
..||+.+ ..++........+-.+. -.|||++|++...
T Consensus 399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999876 23443322222222233 3689999988654
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.00034 Score=74.28 Aligned_cols=107 Identities=12% Similarity=0.160 Sum_probs=88.6
Q ss_pred eEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-
Q 010037 392 LDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (519)
Q Consensus 392 ~~l~~sp~~-~L~sgs----~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~- 465 (519)
+-.+|+|.. +++.++ ..|.|.|| ..+|++.+....+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 345799988 777665 45788888 46777766666566688999999 77888999999999999999887764
Q ss_pred eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
...|..+|..+.|+|+|..|+++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56788999999999999999999999999999765
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.001 Score=68.92 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=68.0
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE-EEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
-...+.-+.|+| .-.++|.+..+|.|-+..++-.++....-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88999999999999999999666666665777777 9999999999999999999999999987654
Q ss_pred e
Q 010037 506 D 506 (519)
Q Consensus 506 ~ 506 (519)
+
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 4
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0013 Score=69.03 Aligned_cols=111 Identities=12% Similarity=0.158 Sum_probs=85.3
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--
Q 010037 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-- 464 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-- 464 (519)
.|.--++...+ +++.|+.-|.|.+|+-..+.....-. ....+..+..++ +..++|.|+..|.|.++-+.....-
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33333444555 99999999999999977766544332 445566677788 8889999999999999998774322
Q ss_pred ---e--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 465 ---D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 465 ---~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
. -..|...|++++|++++..+.+|...|+|..-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 233678899999999999999999999998887766
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.22 E-value=0.034 Score=62.11 Aligned_cols=208 Identities=17% Similarity=0.201 Sum_probs=111.8
Q ss_pred eecccceeecCCCCeEEeeecCCeEEEeeCC----ccccc------cccc------cccceeecC------------C--
Q 010037 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVK----KQSRE------LSSL------YTGQEFLAH------------E-- 284 (519)
Q Consensus 235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~----~~~~~------~~~~------~~~~~l~~H------------~-- 284 (519)
.++|.+++|+||+..++..+..+++.+-... ..+.. .+.. .....|.|. .
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 4667788999999999999988888775431 00000 0000 000012111 1
Q ss_pred -------CCEEEEEEccCCCEEEEEe----CC-CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037 285 -------GSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (519)
Q Consensus 285 -------~~I~~l~fspdg~~LaSgs----~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (519)
+.=..|.|--||.|+|+.. .+ +.|+|||-. +..-..-........++.|.|.+ ..+.++.
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq------ 260 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQ------ 260 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeee------
Confidence 1123589999999999832 23 799999976 43222222222334455565522 2222111
Q ss_pred eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE---EeCCCcEEEEECCCCeEEE--Eec
Q 010037 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VFS 426 (519)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s---gs~Dg~V~lWdl~~~~~~~--~~~ 426 (519)
....+..++++........ .....+......|..++|+.++ .|+. ......|++|-+.+...-. .+.
T Consensus 261 ------~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~ 333 (1265)
T KOG1920|consen 261 ------CKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ 333 (1265)
T ss_pred ------ecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence 1122224444444322211 1111122233448999999998 6665 4445559999988765332 222
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~ 458 (519)
.+.... +.|+|.....+..-..+|.+.++|+
T Consensus 334 ~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 334 FSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 222222 8899976666666667777766664
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.21 E-value=0.012 Score=60.98 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
...+.++|+|+++++ ..+|...|+....... ...+.-....|.+.++ +|+-....+|.|+.--+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------------cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 345899999999998 5678888887321111 1123445678998554 6677678899997433333
Q ss_pred eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (519)
....+..+. ....++. +.++. ...+..+.+++.... +.+..+.. .+|..+.|+
T Consensus 101 ~~k~i~~~~-~~~~If~-----G~LL~---------------~~~~~~i~~yDw~~~----~~i~~i~v--~~vk~V~Ws 153 (443)
T PF04053_consen 101 VVKSIKLPF-SVEKIFG-----GNLLG---------------VKSSDFICFYDWETG----KLIRRIDV--SAVKYVIWS 153 (443)
T ss_dssp TT-----SS--EEEEE------SSSEE---------------EEETTEEEEE-TTT------EEEEESS---E-EEEEE-
T ss_pred cceEEcCCc-ccceEEc-----CcEEE---------------EECCCCEEEEEhhHc----ceeeEEec--CCCcEEEEE
Confidence 222332211 0111111 11111 111224555555432 22444442 248999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
+++ +++..+. ..+.|++.+...... .. ....+..+.= -..-+-+|..++.+-||-..+
T Consensus 154 ~~g~~val~t~-~~i~il~~~~~~~~~-~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~ 215 (443)
T PF04053_consen 154 DDGELVALVTK-DSIYILKYNLEAVAA-IPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN 215 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHH-BTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT
T ss_pred CCCCEEEEEeC-CeEEEEEecchhccc-ccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC
Confidence 999 7777765 478887644322222 10 1112222211 134566777777788887766
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.13 E-value=0.12 Score=51.70 Aligned_cols=174 Identities=18% Similarity=0.243 Sum_probs=102.5
Q ss_pred CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe-eeceeeccCCCCceEEEe
Q 010037 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFT 335 (519)
Q Consensus 257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~ 335 (519)
|+|.++++.+.......+.... -....++|++|+-- ++. |+.+. .+.|.+|++...+ ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~--------------- 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLK--------------- 122 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEE---------------
T ss_pred cEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchh---------------
Confidence 9999999987411001111111 12357899999876 444 44443 4789999997665 111
Q ss_pred ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEE
Q 010037 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415 (519)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWd 415 (519)
...+. ....+.++....+ +++.|...+.|.++.
T Consensus 123 ---------------------------------------------~~~~~-~~~~i~sl~~~~~-~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 123 ---------------------------------------------KAFYD-SPFYITSLSVFKN-YILVGDAMKSVSLLR 155 (321)
T ss_dssp ---------------------------------------------EEEE--BSSSEEEEEEETT-EEEEEESSSSEEEEE
T ss_pred ---------------------------------------------hheec-ceEEEEEEecccc-EEEEEEcccCEEEEE
Confidence 01111 1225666666544 888998888888885
Q ss_pred CCC-CeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-------C--cEE--eeccCCCceEEE---E
Q 010037 416 VGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--QVV--DYTDIREIVSAV---C 477 (519)
Q Consensus 416 l~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-------~--~~~--~~~~~~~~V~~v---~ 477 (519)
.+. ...+..+. ....++++.|-+ +++.++.+..+|.|.++.... + ++. ........|+++ +
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 543 33344443 566789999987 557999999999999998763 2 222 344456778887 5
Q ss_pred EeeC--CC------EEEEEecCCeEEEE
Q 010037 478 YCPD--GK------GGIVGTMTGNCRFY 497 (519)
Q Consensus 478 ~spd--g~------~l~sgs~dg~v~iw 497 (519)
+.|. +. .++.++.+|.|.+.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEEE
Confidence 5552 22 48888899998743
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.12 E-value=0.039 Score=45.09 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=45.9
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCeEEE
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI 455 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~i 455 (519)
...|++++-...+.++.+-.+|+|-+|+-... +-..+.+..++++++...++ .-|++|-.+|+|-+
T Consensus 42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 42 TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45677777777779999999999999975332 22233444578887765332 37999999998753
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.03 E-value=0.0021 Score=40.39 Aligned_cols=37 Identities=43% Similarity=0.842 Sum_probs=31.3
Q ss_pred eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (519)
Q Consensus 420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd 457 (519)
+++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 3445554 788999999999 789999999999999996
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.02 E-value=0.031 Score=59.35 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCCC-eEEEEeCCCcEEEEECCC-----CeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcE------
Q 010037 397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV------ 463 (519)
Q Consensus 397 sp~~-~L~sgs~Dg~V~lWdl~~-----~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~------ 463 (519)
.++| +... .+++|.+.|..+ ...+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3456 3333 367899999998 56777777788889999999 888877655 589999999988552
Q ss_pred ------EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 464 ------~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
+............+|.++|+...+-..|..|..|++..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22233344445678999999888888999999999875
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.018 Score=59.50 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=70.6
Q ss_pred EEEEcCCC--eEEEEeCCCc--EEEEECCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEE
Q 010037 393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSH-NNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVV 464 (519)
Q Consensus 393 ~l~~sp~~--~L~sgs~Dg~--V~lWdl~~~~~~~~~~h-~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~ 464 (519)
.-+|+|+| .+++...|+. |.+.|+.++...+ +.+ .+.-+.=.|+| +|.+++-.+. .| .|.++++..+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 45799999 5566667766 5566777777444 432 33334667899 8887776553 44 4777777777665
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEecC-Ce--EEEEECCCCe
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKGMQ 503 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~d-g~--v~iwdl~~~~ 503 (519)
........-..-.|+|||++|+..+.. |. |.++|+.++.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 444333333377899999998887753 44 6777776554
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.01 E-value=0.34 Score=49.09 Aligned_cols=253 Identities=11% Similarity=0.105 Sum_probs=129.6
Q ss_pred cCCCCeEEee---------ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 244 sp~g~~lasg---------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
|||+++++.. +..+.+.|+++..+.... +......+....|||+|++||-.. ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5677777663 334678888887644221 111156788899999999998875 6789999987
Q ss_pred cCeeeceeecc-----------------CCCCceEEEeecCCCCeEEeeccCCceeeeeeec------------------
Q 010037 315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR------------------ 359 (519)
Q Consensus 315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 359 (519)
++...+.-... -.....+.|+++....+ .+..+...+.......
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE-EEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 76433211111 11234555666654332 2222222222111111
Q ss_pred -cCCC--eeEEEeCCccccccccceeEe---eccCCCeeEEEEcCCC-eEEEEe--CC---CcEEEEECCCCeEEEEec-
Q 010037 360 -KSSD--LTCVVLPPKVFRLLEKPLHEF---QGHSSEVLDLSWSKNG-FLLSSS--AD---KTVRLWQVGIDRCLRVFS- 426 (519)
Q Consensus 360 -~s~~--~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~-~L~sgs--~D---g~V~lWdl~~~~~~~~~~- 426 (519)
+... ..+.+++....... .+... ..-...+..+.|.+++ .|+..- .+ -.+.+.|..++.+.....
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 1111 11222222211110 01111 1234467889999988 355443 32 236677887765443332
Q ss_pred -CCCcE---EEEEEe-eCCCCEEEEEeCCCe--EEEEEcCCCcEEeeccCCCceEE-EEEeeCCCEEE-EEecCC----e
Q 010037 427 -HNNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG----N 493 (519)
Q Consensus 427 -h~~~V---~~v~fs-p~d~~~l~sgs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~-v~~spdg~~l~-sgs~dg----~ 493 (519)
....| ....|. +.+..+|.....+|. |.+++...+....+....-.|+. +.|+++++.|. ++..++ .
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 33332 245554 635556666667774 55666777776666666666755 67888877655 454422 4
Q ss_pred EEEEECC-CCeeeecc
Q 010037 494 CRFYDIK-GMQIFDLS 508 (519)
Q Consensus 494 v~iwdl~-~~~l~~~~ 508 (519)
+..-++. ++.+..+.
T Consensus 309 lY~v~~~~~~~~~~LT 324 (353)
T PF00930_consen 309 LYRVSLDSGGEPKCLT 324 (353)
T ss_dssp EEEEETTETTEEEESS
T ss_pred EEEEEeCCCCCeEecc
Confidence 5555667 66666554
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.00 E-value=0.091 Score=54.36 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+....+....++.|.+.+-...+. ....+++..++.||+|++||.-..+|.+.+....
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 445555555566666444333211 2335689999999999999999999999888754
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.13 Score=55.71 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=117.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (519)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (519)
+|++.+..++.|+.+|.|.+.+- .-+.+..++..+..+....+..+....++++.-+... ....+.+|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~----------np~llkiw~ 98 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG----------NPVLLKIWD 98 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC----------CceEEEEec
Confidence 46788889999999999887763 2233345554444422222222222333333322221 111445555
Q ss_pred Ccccccccccee----Eeec-----cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC--CC---eEEEEecCCCcEEEEE
Q 010037 371 PKVFRLLEKPLH----EFQG-----HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--ID---RCLRVFSHNNYVTSVA 435 (519)
Q Consensus 371 ~~~~~~~~~~~~----~~~~-----h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~--~~---~~~~~~~h~~~V~~v~ 435 (519)
....+....|.. .+.. ...++.+++.+.+- .++.|-.+|.|..+.=. .. +..-......+||.++
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 544332221211 1122 35678889988877 88899999999988421 11 1112223567999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEEcCCCcE-E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 436 FNPVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+.. ++..++-...-..|.+|.+....+ + ....++..+++..+++....+++++ ...+.+|+..+.+
T Consensus 179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 987 666522222345799999985552 2 3566777888888887666566665 3468999987644
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.075 Score=54.79 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=63.2
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc-CCCceEE-
Q 010037 400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSA- 475 (519)
Q Consensus 400 ~~L~sgs~Dg~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~- 475 (519)
+.|+.++.++.|..+|..+++.+-.... .....+... .+.+++.++.+|.|.+.|..+++++.... ....+.+
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE 371 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC
Confidence 4777788899999999998876544321 111222222 25678888999999999999999884322 2222322
Q ss_pred EEEeeCCCEEEEEecCCeEEEEEC
Q 010037 476 VCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 476 v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
..+ .+..|++++.||.++.+++
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 222 3447889999999888764
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.86 E-value=0.031 Score=61.43 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=80.8
Q ss_pred cceeEeeccCCC-eeEEEEcCC-----C-eEEEEeCCCcEEEEECCCCe--EEE----EecCCCcEEEEEEeeCCCCEEE
Q 010037 379 KPLHEFQGHSSE-VLDLSWSKN-----G-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFI 445 (519)
Q Consensus 379 ~~~~~~~~h~~~-V~~l~~sp~-----~-~L~sgs~Dg~V~lWdl~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~ 445 (519)
+.+.++..|... |.+++-... . ..+.|-.+..|..||.+-.. ++. .+......+|++-.. ..+||
T Consensus 515 KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~ia 592 (794)
T PF08553_consen 515 KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYIA 592 (794)
T ss_pred cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceEE
Confidence 445666665543 555543211 2 56777788899999988642 332 222455677777664 56899
Q ss_pred EEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 446 sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
+|+.+|.||+||--..+.- .+.+.+.+|..|..+.||++|++.+ +..+.++++
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999995432222 3557789999999999999877655 567888876
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.81 E-value=0.51 Score=47.82 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEEEc-CCC--eEEEEeCCCcEEE--EECCCCeEEEEecCCCcEEE-EEEeeCCCCEEEEEeCC----CeEEEEEcC-CC
Q 010037 393 DLSWS-KNG--FLLSSSADKTVRL--WQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSID----GKVRIWEVR-RC 461 (519)
Q Consensus 393 ~l~~s-p~~--~L~sgs~Dg~V~l--Wdl~~~~~~~~~~h~~~V~~-v~fsp~d~~~l~sgs~D----g~V~iwd~~-~~ 461 (519)
.+.+. +++ +|.....||.-+| ++...+.........-.|+. +.|++.++.++.++..+ ..|..-++. .+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 45554 555 6666667776554 45566664433335566755 67788444455566653 356666777 66
Q ss_pred cEEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037 462 QVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs 489 (519)
.+..+......-..+.|+|+|++++...
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 6666555444447899999999887644
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.84 Score=46.82 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=129.4
Q ss_pred ceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeccc
Q 010037 240 SATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE 315 (519)
Q Consensus 240 ~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~ 315 (519)
.+++++.+..+ +....++.|.+.+....... .. ...+. ....++++|+++.+..+.. +++|.+.|-.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~-~~-----~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL-GS-----IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCccccee-eE-----eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 46788888854 44555689999995432211 11 11222 4567899999987766654 57777777666
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (519)
+....... .+ ..+ ..++
T Consensus 150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a 166 (381)
T COG3391 150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA 166 (381)
T ss_pred CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence 65432211 11 122 7788
Q ss_pred EcCCC-eEE-EEeCCCcEEEEECCCCeEEE-----EecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCcEEe
Q 010037 396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD 465 (519)
Q Consensus 396 ~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~-----~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~~~~~~ 465 (519)
+.|+| .++ +-..++.|.+.|.......+ .......-..+.++| ++.++...... +.+.+.|..++.+..
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 99999 444 44578999999987776664 233344556789999 78766554443 599999999988885
Q ss_pred ecc-CCC-ceEEEEEeeCCCEEEEEec-CCeEEEEECCCCeeeec
Q 010037 466 YTD-IRE-IVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 466 ~~~-~~~-~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~l~~~ 507 (519)
... ... ....+..+|+|+.+.+... .+.+.+-|..+..+...
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 422 112 4677899999999888744 48899999988776553
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.49 Score=48.99 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
.+++..|+.||++ +++.-..+|.+.+....-.+.+..+... .....+.|.- ++..++.- ...|.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg------- 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVG------- 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEEC-------
Confidence 3689999999999 8888888999999987777777666533 4556677764 32222211 22333333
Q ss_pred eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
..... +.|..++..++..-.|| |||+.-...++++
T Consensus 286 ---~~~~~---~~~~~~~~~~l~~E~DG-~riit~~~~~~l~ 320 (410)
T PF04841_consen 286 ---PDGDS---ISFWYDGPVILVSEIDG-VRIITSTSHEFLQ 320 (410)
T ss_pred ---CCCCc---eEEeccCceEEeccCCc-eEEEeCCceEEEE
Confidence 12222 34444555555555566 7777766665544
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.54 E-value=0.054 Score=59.64 Aligned_cols=150 Identities=9% Similarity=0.173 Sum_probs=94.0
Q ss_pred CCCEEEE-EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc
Q 010037 295 DGQYLAS-GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (519)
Q Consensus 295 dg~~LaS-gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (519)
+.++|+. ......|+-.|+..|+.+..+..+.... ...+.+.... . .......+.+-.+..+..|++++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~--a-------qlt~e~tflGls~n~lfriDpR~ 561 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF--A-------QLTNEQTFLGLSDNSLFRIDPRL 561 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc--c-------ccCCCceEEEECCCceEEeccCC
Confidence 3344443 3455789999999999999988876543 2233222100 0 00011123344455666677765
Q ss_pred cccccccee---EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 010037 374 FRLLEKPLH---EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 374 ~~~~~~~~~---~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~ 449 (519)
-. .+.+. ..........|++-..+|+||.|+.+|.|||||--..+....+. ...+|..|..+. ||+++++.+
T Consensus 562 ~~--~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc- 637 (794)
T PF08553_consen 562 SG--NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC- 637 (794)
T ss_pred CC--CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-
Confidence 32 11111 11234567889999999999999999999999944333333333 578999999999 999888766
Q ss_pred CCeEEEEEc
Q 010037 450 DGKVRIWEV 458 (519)
Q Consensus 450 Dg~V~iwd~ 458 (519)
+..|.+++.
T Consensus 638 ~tyLlLi~t 646 (794)
T PF08553_consen 638 KTYLLLIDT 646 (794)
T ss_pred cceEEEEEE
Confidence 457778775
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.53 E-value=1.2 Score=46.03 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=116.9
Q ss_pred ceeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--------
Q 010037 240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-------- 306 (519)
Q Consensus 240 ~~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-------- 306 (519)
...++|+|+++|.+ +..-.|+|+|+..+..... .+..-. -..+.|.++++.|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence 35789999999864 3335699999986632111 122111 12389999988776654333
Q ss_pred ---cEEEEecccCeee--ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037 307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (519)
Q Consensus 307 ---~I~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (519)
.|+.|.+.+.... ..+.........+..........+.+ ....+.....+.+.+...........
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i----------~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI----------SSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE----------EEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE----------EEEccccCCeEEEEeccccCCCcCCc
Confidence 3677777665432 12222222221222211111111111 11111112344444443321011122
Q ss_pred eEeeccCCCe-eEEEEcCCC--eEEEE--eCCCcEEEEECCCCe---EE-EEecCCCcEEEEEEeeCCCCEEEEEeCCC-
Q 010037 382 HEFQGHSSEV-LDLSWSKNG--FLLSS--SADKTVRLWQVGIDR---CL-RVFSHNNYVTSVAFNPVDDNYFISGSIDG- 451 (519)
Q Consensus 382 ~~~~~h~~~V-~~l~~sp~~--~L~sg--s~Dg~V~lWdl~~~~---~~-~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg- 451 (519)
..+......+ ..+... ++ ++.|- ...+.|.-.++.... .. ..+.+...+.-..+....+.+++....++
T Consensus 270 ~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS 348 (414)
T ss_dssp EEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred EEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence 2333333333 333333 44 33332 223566667777654 22 34456654333344442344555555555
Q ss_pred -eEEEEEcC-CCcEEeecc-CCCceEEEEEeeCCCEEEEE--ec--CCeEEEEECCCCeeeec
Q 010037 452 -KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVG--TM--TGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 452 -~V~iwd~~-~~~~~~~~~-~~~~V~~v~~spdg~~l~sg--s~--dg~v~iwdl~~~~l~~~ 507 (519)
.|+++++. +........ ..+.|..+...+++..+... +. -+.+..||+.++++..+
T Consensus 349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred cEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 68999999 554443332 33445666666666554432 22 35789999999887544
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.50 E-value=0.00098 Score=69.06 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=80.8
Q ss_pred eccCCCeeEEEEcCCC--eEEEEe----CCCcEEEEECCCC--eEEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037 385 QGHSSEVLDLSWSKNG--FLLSSS----ADKTVRLWQVGID--RCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK 452 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~--~L~sgs----~Dg~V~lWdl~~~--~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (519)
.+|....++++|++-. .|++|- .|..+.|||+.++ .+.... .......+++|.. +.+++++|.....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence 4567788999999865 666663 4677999999876 222221 1334566899996 8999999999999
Q ss_pred EEEEEcCCCcEEeeccCCCceEEEEEee-CCCEEEEEecCCeEEEEEC
Q 010037 453 VRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 453 V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl 499 (519)
+.++|++........-....+..+...| .+.++++-. ||.|.+||.
T Consensus 178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 9999999543332222333556677788 667776655 999999993
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.44 E-value=0.83 Score=43.03 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=110.8
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
...+++.|+..+.+.--|...++..-.+. . ...|-+-+.- -|++++.|...|.+.+.++.+|.....+...
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~i------l--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI------L--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehh------h--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 34577778888888888777655432211 1 1223222222 4778999999999999999998754433221
Q ss_pred CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE-EEEcCCC-eEE
Q 010037 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-LSWSKNG-FLL 403 (519)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp~~-~L~ 403 (519)
. .|.+ ....+++ .+.
T Consensus 93 ~---------------------------------------------------------------~vk~~a~~d~~~glIy 109 (354)
T KOG4649|consen 93 E---------------------------------------------------------------TVKVRAQCDFDGGLIY 109 (354)
T ss_pred h---------------------------------------------------------------hhccceEEcCCCceEE
Confidence 1 1111 1124455 999
Q ss_pred EEeCCCcEEEEECCCCeEEEEecCCCcE-EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--EEeeccCCCceEE--EEE
Q 010037 404 SSSADKTVRLWQVGIDRCLRVFSHNNYV-TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSA--VCY 478 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V-~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~--v~~ 478 (519)
.|+.|++.+..|.++..++...+-.+.+ .+-+.+| ....|..+...|.|.--..+... .+-......+|.+ ++.
T Consensus 110 cgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv 188 (354)
T KOG4649|consen 110 CGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV 188 (354)
T ss_pred EecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec
Confidence 9999999999999999998887633332 3345556 33334444445555544554442 2211122223322 122
Q ss_pred eeCCCEEEEEecCCeEEEEECCCCeeeeccccceeE
Q 010037 479 CPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLF 514 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~ 514 (519)
+..+..++.||.+.-++-.+.++++..++.+++
T Consensus 189 ---~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf 221 (354)
T KOG4649|consen 189 ---GSSVIITTVDGVLTSFDESGRQVWRPATKGPIF 221 (354)
T ss_pred ---cceEEEEEeccEEEEEcCCCcEEEeecCCCcee
Confidence 334556666777766665555666655554444
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.44 E-value=0.096 Score=49.04 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=81.7
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC 479 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s 479 (519)
+++.|+..+.+.--|..+++.+-.......+-+-+.- -+++++.|+..|.+++.+.+++... .+......-......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8889999999999999999887666556666665554 3778999999999999999999555 444333333445677
Q ss_pred eCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 480 PDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 480 pdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+++..+..|+.|++.+..|.++...+.
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEE
Confidence 899999999999999999998766543
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.011 Score=40.38 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=32.9
Q ss_pred ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
......|..++|+|...+||.|+.+|.|.+|.+...+++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence 344567999999999999999999999999999655543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.35 E-value=0.29 Score=48.88 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=75.5
Q ss_pred cCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC--C
Q 010037 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR--C 461 (519)
Q Consensus 387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~--~ 461 (519)
..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-. ....++++... +++++.|.....|.++..+. .
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 46778888866 44555544 4789999998887 554443 44467776664 56999999888888885543 3
Q ss_pred cEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 462 QVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 462 ~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+... .......++++.+-++++.++++..+|.+.++...
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3332 33345668999999777899999999999999886
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.12 Score=53.10 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=95.5
Q ss_pred cCCCE-EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc
Q 010037 294 LDGQY-LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (519)
Q Consensus 294 pdg~~-LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (519)
.+.++ |.++..-..++-.|++.|+.+..+..+.. +..+.+.+..... .......+.+-.+..++.|+++
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEeccc
Confidence 34443 45566666788899999999988887766 3333333332110 1111222345556677778877
Q ss_pred cccccccceeEeecc----CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 010037 373 VFRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG 447 (519)
Q Consensus 373 ~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg 447 (519)
+-... .+...++| .....|++-..+|+++.||.+|.|||||--..+....++ ...+|..|..+. +|.+++..
T Consensus 413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~T 489 (644)
T KOG2395|consen 413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILAT 489 (644)
T ss_pred ccCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEe
Confidence 54332 12222222 345677777778899999999999999973333333333 778899999998 88877765
Q ss_pred eCCCeEEEEEcC
Q 010037 448 SIDGKVRIWEVR 459 (519)
Q Consensus 448 s~Dg~V~iwd~~ 459 (519)
+ +..|.+.++.
T Consensus 490 c-~tyLlLi~t~ 500 (644)
T KOG2395|consen 490 C-KTYLLLIDTL 500 (644)
T ss_pred c-ccEEEEEEEe
Confidence 5 5677777753
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.28 E-value=1.7 Score=44.97 Aligned_cols=213 Identities=16% Similarity=0.127 Sum_probs=103.4
Q ss_pred CEEEEEEccCCCEEEEE-eCCC----cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037 286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (519)
Q Consensus 286 ~I~~l~fspdg~~LaSg-s~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (519)
.+....++|+|++||-+ +..| .|++.|+.+++.+... +.......+.|..++...++.......... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~-----~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTS-----DS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS------CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccc-----cC
Confidence 34467899999988765 3333 5999999999765432 111112224554443332222211111100 01
Q ss_pred CCCeeEEEeCCccccccccceeEeeccCC--CeeEEEEcCCC-eEE-EEeCC---CcEEEEECCCC-----eEEEEecCC
Q 010037 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLL-SSSAD---KTVRLWQVGID-----RCLRVFSHN 428 (519)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~-~L~-sgs~D---g~V~lWdl~~~-----~~~~~~~h~ 428 (519)
.....+..+....... .....+..... ....+..++++ +|+ ..... ..|.+.++..+ .........
T Consensus 199 ~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 1122233332222111 11122333222 25678889998 444 33333 34788888875 444444444
Q ss_pred CcEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCcE----EeeccCCCceEEEEEeeCCCEEEEE-ecCC--eEEEEE
Q 010037 429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQV----VDYTDIREIVSAVCYCPDGKGGIVG-TMTG--NCRFYD 498 (519)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~sg-s~dg--~v~iwd 498 (519)
..+....-+. ++.+++... ..+.|.-.++.+... ..+..+...+.-..+...+.+|+.. -.++ .|++|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 4454444444 444444433 246777788877652 2345555544444445555555554 4444 489999
Q ss_pred CC-CCeeeec
Q 010037 499 IK-GMQIFDL 507 (519)
Q Consensus 499 l~-~~~l~~~ 507 (519)
+. +.....+
T Consensus 356 ~~~~~~~~~~ 365 (414)
T PF02897_consen 356 LDDGKESREI 365 (414)
T ss_dssp TT-TEEEEEE
T ss_pred CCCCcEEeee
Confidence 99 5554443
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.081 Score=54.79 Aligned_cols=124 Identities=21% Similarity=0.333 Sum_probs=85.2
Q ss_pred EeeccCCCeeEEEEcCCC-eEEEE---eCC-CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCe--EE
Q 010037 383 EFQGHSSEVLDLSWSKNG-FLLSS---SAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VR 454 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~-~L~sg---s~D-g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~--V~ 454 (519)
.+..-...+..-+|+|++ .++.. ... ..+.++++.+++..........-..-+|+| +++.|+ +...||. |.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEE
Confidence 334445566777899988 33222 222 459999999998877777666667789999 776665 4455664 67
Q ss_pred EEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec-CCe--EEEEECCCCeeeec
Q 010037 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKGMQIFDL 507 (519)
Q Consensus 455 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~-dg~--v~iwdl~~~~l~~~ 507 (519)
++|+..++...+....+.-+.-.|+|||+.|+-.+. .|. |.++++.+.+..++
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 778888876665555555567889999999887665 444 77778877765443
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.14 E-value=1.8 Score=45.98 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=64.8
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE------------------eCCCeEEEEEcCCCc
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG------------------SIDGKVRIWEVRRCQ 462 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg------------------s~Dg~V~iwd~~~~~ 462 (519)
.++.++.+|.+...|..+++.+-..... ...++.+| ..++.+ ..+|.|.-.|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 5778889999999999999988765422 11123333 222222 246789999999998
Q ss_pred EEeeccCC---------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 463 VVDYTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 463 ~~~~~~~~---------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.+-..... .....-...-.+..|++++.||.++.+|..+++++
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 87322222 11111111235678899999999999999998754
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.99 E-value=0.44 Score=46.26 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=70.6
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE---------------EecCCCcEEEEE-EeeCCCCEEEEEeCCCeE
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV 453 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~---------------~~~h~~~V~~v~-fsp~d~~~l~sgs~Dg~V 453 (519)
|..+...|+- .|++-+ |+.|.++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888865 443333 5999999987644333 222333454444 112233344444445699
Q ss_pred EEEEcCCC-----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 454 ~iwd~~~~-----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.||..... +...-......+..++|. ++.|++|..+ ...+.|+.++....+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSEL 172 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence 99987653 344555566889999998 5578887755 478889987765544
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.89 E-value=0.026 Score=38.60 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 444
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.027 Score=62.18 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=73.3
Q ss_pred eEEEEeCCCcEEEEECCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCc---eE
Q 010037 401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS 474 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~---V~ 474 (519)
.++.|+..|.|...|+...-. .+-..-.++|++++|+. ++..++.|-.+|.|.+||+..+++++ +..+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 788999999999999877522 12223578999999999 99999999999999999999988774 3344444 44
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 475 AVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
.+.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 4556667777888888887 5655
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.78 E-value=0.6 Score=44.55 Aligned_cols=204 Identities=12% Similarity=0.188 Sum_probs=97.5
Q ss_pred EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (519)
Q Consensus 234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd 312 (519)
..+.++.++|+|+.. ++++....+.|...+... . .+... .+.+ .+..-.|++..++.++++--.++.+.+.+
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~-vlr~i----~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K-VLRRI----PLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE----E-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C-EEEEE----eCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 344566799999755 666677788887777542 2 12211 1233 35677899988888777766689999998
Q ss_pred cccCee------eceee--cc---CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037 313 VIEHER------LDGFD--VQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (519)
Q Consensus 313 ~~~~~~------~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (519)
+..... ...+. .. ......+++.+.....+++-.-....+.......... ....... ..+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~--~~~~~~~-------~~~ 163 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF--DLFVSDD-------QDL 163 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS----EEEE--------HHH
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc--ceeeccc-------ccc
Confidence 843221 11222 11 1123445555544333322111111111111101000 0000000 001
Q ss_pred eEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCC----------CcEEEEEEeeCCCCEEEEEeC
Q 010037 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN----------NYVTSVAFNPVDDNYFISGSI 449 (519)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~----------~~V~~v~fsp~d~~~l~sgs~ 449 (519)
.........+..++++|.. +++.+..++.|.++| ..++++..+.-. ...-.|+|.| +|++.+++ .
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-E 240 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-E 240 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-T
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-C
Confidence 1112234568889999975 777788889999999 677777766411 2578899999 88766664 4
Q ss_pred CCeEEEE
Q 010037 450 DGKVRIW 456 (519)
Q Consensus 450 Dg~V~iw 456 (519)
-+..+++
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555443
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=1.6 Score=44.75 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=85.2
Q ss_pred CeeEEEEcCCC-eEEEEe---CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 010037 390 EVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV 464 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs---~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~ 464 (519)
....++++|++ .++.+. .++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|.....+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 45678889988 444443 37899999999999888865333338999999 777555544 7889999998777666
Q ss_pred e-----eccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeec
Q 010037 465 D-----YTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDL 507 (519)
Q Consensus 465 ~-----~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~ 507 (519)
. ..........+.+.|+|+.+.+.... +.+...|..++.+...
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 4 22333445678999999976665443 5899999988877654
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.46 E-value=3 Score=41.27 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=68.4
Q ss_pred eeEeeccCCCeeEEEEcCCC-eEE-EEeCCCcEEEEECCC------CeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037 381 LHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI------DRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~V~lWdl~~------~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
+..+..|-..-+.|+|+|++ .|+ +=+..+.|.-|++.. ++....+ . ..+..-.++... ++++.+++-.+
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~ 233 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG 233 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC
Confidence 34444556667889999999 444 445567888887752 1111111 1 345666677777 78888655555
Q ss_pred C-eEEEEEcCCCcEEe-eccCCCceEEEEEe-eCCCEEEEEec
Q 010037 451 G-KVRIWEVRRCQVVD-YTDIREIVSAVCYC-PDGKGGIVGTM 490 (519)
Q Consensus 451 g-~V~iwd~~~~~~~~-~~~~~~~V~~v~~s-pdg~~l~sgs~ 490 (519)
| .|.+|+.. ++++. ..-....+++++|- |+.+.|.+.+.
T Consensus 234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 4 99999999 76664 44444778888885 45555554443
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.45 E-value=0.55 Score=47.82 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=68.4
Q ss_pred cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe--------------------CCCcEEEEECCC
Q 010037 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--------------------ADKTVRLWQVGI 418 (519)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs--------------------~Dg~V~lWdl~~ 418 (519)
+...+.+++++...+.+.+.--. -.+....-.++-|.|.. .++|+. .-.++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 34445666666665554321100 01122345667777765 666654 236799999999
Q ss_pred CeEEEEecCC---CcEEEEEEeeC-CCC-EEEEEeCCCeEEEEEc-CCC-----cEEeecc----------C-------C
Q 010037 419 DRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRC-----QVVDYTD----------I-------R 470 (519)
Q Consensus 419 ~~~~~~~~h~---~~V~~v~fsp~-d~~-~l~sgs~Dg~V~iwd~-~~~-----~~~~~~~----------~-------~ 470 (519)
.+.++++... ..+..|.|... +.. -|+.+....+|..|-- ..+ +++.... . .
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 9999999743 35667777541 223 3444445556665544 332 2222211 1 3
Q ss_pred CceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037 471 EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG 501 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~ 501 (519)
.-|+.|..|.|.++|.+++. +|.|+.||+.+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 45899999999999887665 89999999986
No 372
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.26 E-value=0.98 Score=38.28 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=77.0
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCC--------CeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCeEEEEEcCCC
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGI--------DRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~--------~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
.|.... .|+.++.-++|.|++... ...+..+.-+..|++|+-.|. ....|+.|+. ..|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 344444 678888889999998653 345667777888999876663 3567777775 57999999998
Q ss_pred cEEeeccCCCceEEEEEee----CCCEEEEEecCCeEEEEECCCCee
Q 010037 462 QVVDYTDIREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 462 ~~~~~~~~~~~V~~v~~sp----dg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
.-+-+....+.|+++.+-. +..++++ +.+-.|.-||..+.++
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEI 129 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEE
Confidence 8887888888899988854 2334444 4466777788776654
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.3 Score=54.28 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
.+..++.|+..|.|...|+...-..+.. . ..-.++|.+++|+.+|+.++.|-.+|.|.+||+..++..+.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~---n---e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQ---N---ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhc---C---CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 3446778888888888777642111110 0 123579999999999999999999999999999999998888887
Q ss_pred CCCCceEEEe
Q 010037 326 DTDPSCLYFT 335 (519)
Q Consensus 326 ~~~~~~~~~~ 335 (519)
..+...+.+.
T Consensus 172 ~ap~t~vi~v 181 (1206)
T KOG2079|consen 172 GAPVTGVIFV 181 (1206)
T ss_pred CCccceEEEE
Confidence 7776665543
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.19 E-value=0.55 Score=50.85 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=61.8
Q ss_pred eeEEEEcCCC-eEEEEeCC------------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE--
Q 010037 391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI-- 455 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~D------------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i-- 455 (519)
.+.-.|+|+| .|++.... +.+.+.++..+.... .....|..+.|+| ||..++... +|+|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 5667788886 55555422 233333444443322 3356799999999 888877765 578877
Q ss_pred -EEcCCCcEE-----ee-ccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 456 -WEVRRCQVV-----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 456 -wd~~~~~~~-----~~-~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
-....+... .+ ......+..+.|.+++.++ ++..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 443444311 12 2233446889999999854 5555554445543
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=3.2 Score=39.85 Aligned_cols=201 Identities=14% Similarity=0.222 Sum_probs=110.2
Q ss_pred ceeecCCCCe-EEeeecCCe-EEEeeCCccccccc-cccccceeecCCCCEEEEEEccCCCEEEEEeCC-----CcEEEE
Q 010037 240 SATLKPGDHE-LTLGQRMRR-VRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRVW 311 (519)
Q Consensus 240 ~~~~sp~g~~-lasgs~dg~-I~vw~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-----g~I~iW 311 (519)
.++++|.-.. ++.+-.-|+ ..++|......... .-...+-|.+|- .|||||.+|...-.| |.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 4677776543 444555565 35666654432211 122334466775 699999998765433 678888
Q ss_pred ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (519)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (519)
|...+- ..+.++..|.-..
T Consensus 146 d~r~~f-------------------------------------------------------------qrvgE~~t~GiGp 164 (366)
T COG3490 146 DAREGF-------------------------------------------------------------QRVGEFSTHGIGP 164 (366)
T ss_pred eccccc-------------------------------------------------------------ceecccccCCcCc
Confidence 876331 1123344455555
Q ss_pred eEEEEcCCC-eEEEE------------------eCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEE
Q 010037 392 LDLSWSKNG-FLLSS------------------SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISG 447 (519)
Q Consensus 392 ~~l~~sp~~-~L~sg------------------s~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sg 447 (519)
..+.|.++| .|+.+ ++.-.+.+.|..++..+.... +.-.|..++..+ ++..++.+
T Consensus 165 Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgc 243 (366)
T COG3490 165 HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGC 243 (366)
T ss_pred ceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEE
Confidence 556666666 33332 223345555655665554332 344577777777 66655544
Q ss_pred eCCCe-----EEEEEcCCCcEEe--------eccCCCceEEEEEeeCCCEEEEEecCCe-EEEEECCCCeeeecc
Q 010037 448 SIDGK-----VRIWEVRRCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKGMQIFDLS 508 (519)
Q Consensus 448 s~Dg~-----V~iwd~~~~~~~~--------~~~~~~~V~~v~~spdg~~l~sgs~dg~-v~iwdl~~~~l~~~~ 508 (519)
-..|. --+=-...++.++ +......|-+|+.+.+..+++..+-.|+ ..+||..++.+....
T Consensus 244 Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 244 QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 33221 1111112223222 2233456778888876666666666655 679999999886543
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.10 E-value=0.054 Score=49.82 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=63.6
Q ss_pred eEEEEeCCCcEEEEECCCCeEEE-Eec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc-CC-CceEEE
Q 010037 401 FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IR-EIVSAV 476 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~-~~V~~v 476 (519)
.++.|+.+|.|.+|..+..-.+. .+. ....|-++--.-.++.+..+++.||.||.|++.-.+.+.... |. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 78999999999999877221111 111 122232322222256799999999999999999888885443 44 345555
Q ss_pred EEeeCCCEEEEE--ecCCeEEEEECC
Q 010037 477 CYCPDGKGGIVG--TMTGNCRFYDIK 500 (519)
Q Consensus 477 ~~spdg~~l~sg--s~dg~v~iwdl~ 500 (519)
.....+..|+.+ +.|..++.|++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchh
Confidence 555555566666 666666666664
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.69 Score=47.77 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=78.1
Q ss_pred cceeEeeccCCCeeEEEEcCCC---e-----EEEEeCCCcEEEEECCCCeE--EEEec-----CCCcEEEEEEeeCCCCE
Q 010037 379 KPLHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDRC--LRVFS-----HNNYVTSVAFNPVDDNY 443 (519)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~~---~-----L~sgs~Dg~V~lWdl~~~~~--~~~~~-----h~~~V~~v~fsp~d~~~ 443 (519)
+.+.++.-|.. |+-+.+.|+. . -+.|-.|..|.-||.+-... +.... ......|++-. ...+
T Consensus 367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~ 443 (644)
T KOG2395|consen 367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY 443 (644)
T ss_pred eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence 44555555555 6666777754 2 23456788899999874322 22221 23344555543 4679
Q ss_pred EEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+++||.+|.||+||--..+.- .+.+...+|..|..+.||++|+..+ +..+.+-++.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999999998332222 4778889999999999999876544 6677777664
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=3.9 Score=39.47 Aligned_cols=198 Identities=14% Similarity=0.173 Sum_probs=111.0
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeee
Q 010037 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (519)
Q Consensus 280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (519)
+.+-+..|.++.|+|+.+.|++......-.||=-.+|+.+..+..... ....+.+..++ . +.+.-+. ......+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~-fvi~dER--~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--Q-FVIVDER--DRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--E-EEEEehh--cceEEEE
Confidence 455566699999999999999988888888887788888887765432 22233332221 1 1111111 1111111
Q ss_pred ccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-EEEE--e-cC------
Q 010037 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRV--F-SH------ 427 (519)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~-~~~~--~-~h------ 427 (519)
.-..+..+....... -++......+...-.++|.|.+ .|+.+-.-.-+.||.+.... .+.. . .+
T Consensus 156 ~vd~~t~~~~~~~~~-----i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 156 TVDADTTVISAKVQK-----IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEcCCccEEeccceE-----EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 111111111111100 0111122225677889999988 88888888888888766332 1110 0 11
Q ss_pred -CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE--Eeecc----CC---CceEEEEEeeCCCEEEE
Q 010037 428 -NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTD----IR---EIVSAVCYCPDGKGGIV 487 (519)
Q Consensus 428 -~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~----~~---~~V~~v~~spdg~~l~s 487 (519)
-..|.++.|++..+.+++-+..++.|.-.|....-+ +.+.. .. ...-.|+..++|.+.++
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 234778899987788888888888888888765421 11111 11 12345677777764444
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.65 E-value=3.7 Score=43.63 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEE--EEEeeCCCEEEEEecCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKGGIVGTMTG 492 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~--v~~spdg~~l~sgs~dg 492 (519)
.+.+++.++.||.|+.+|..+++.+-.......+.+ +.|..+|+ +.++..+|
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~-~yv~~~~g 458 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK-QYVGVMVG 458 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE-EEEEEEec
Confidence 567888899999999999999998844344444433 34455664 34444444
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.46 E-value=1.7 Score=43.07 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=45.6
Q ss_pred cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEEeecc
Q 010037 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTD 468 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~ 468 (519)
.|.++|+.+++.+..+.....+.+|+.+..+..+|++.+ .++.|.|||..+++.+....
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 488899999999999987778889999985555776654 57899999999999885443
No 381
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.31 E-value=9 Score=41.11 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
|.|.-+|+.+++++-......+...-...-.|.+++.++.+|.++.+|.++|+.+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 4577788888877732222222111112225557778888999999999999753
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.12 E-value=2.3 Score=39.62 Aligned_cols=89 Identities=10% Similarity=0.225 Sum_probs=60.4
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEE--CCCCeE-----EEEecC-----CCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037 391 VLDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (519)
Q Consensus 391 V~~l~~sp~~--~L~sgs~Dg~V~lWd--l~~~~~-----~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw 456 (519)
-+.++|+.+. ..++-+.+-+|.-|| ..++.. +..+.. .-..-.++... .|+++++.-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 3567787666 566777788887777 444432 222221 11122344455 78899998899999999
Q ss_pred EcCCCcEE-eeccCCCceEEEEEee
Q 010037 457 EVRRCQVV-DYTDIREIVSAVCYCP 480 (519)
Q Consensus 457 d~~~~~~~-~~~~~~~~V~~v~~sp 480 (519)
|..+++++ .+.-....|+++||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 99999988 4556678899999953
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.00 E-value=0.95 Score=47.49 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=76.4
Q ss_pred cCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECC-----CCeEEEEe--cC--CCc--EEEEEEeeCCCCEEEEEeCC
Q 010037 387 HSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--SH--NNY--VTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 387 h~~~V~~l~~sp~~-----~L~sgs~Dg~V~lWdl~-----~~~~~~~~--~h--~~~--V~~v~fsp~d~~~l~sgs~D 450 (519)
.-..|..+.|.|-+ .|++....+.|.||.+. .++.+... .. .-+ -....||| ....|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 34458999999953 67777778899999975 22322221 11 222 25678999 77777776665
Q ss_pred CeEEEEEcCC--CcEEeeccCCCceEEEEEeeCCCEEEEEecCC-eEEEEECCCC
Q 010037 451 GKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKGM 502 (519)
Q Consensus 451 g~V~iwd~~~--~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg-~v~iwdl~~~ 502 (519)
..=.+++++. .++..-....+.|.+.||.+||+.|+++-... .-+|||-...
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 5545666654 33434456778899999999999988865432 3578886543
No 384
>PHA02713 hypothetical protein; Provisional
Probab=93.90 E-value=2.1 Score=46.30 Aligned_cols=95 Identities=5% Similarity=-0.027 Sum_probs=55.9
Q ss_pred CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CeEEEEEcCC-CcEEe---eccCCCceEEE
Q 010037 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRR-CQVVD---YTDIREIVSAV 476 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~iwd~~~-~~~~~---~~~~~~~V~~v 476 (519)
..|..||..+.+....-. +...-.+++.. ++.+.+.|+.+ ..|..||..+ .+=.. +.........+
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 357788888876643332 11111122222 56777777754 2467899887 43221 22222223333
Q ss_pred EEeeCCCEEEEEecCC--eEEEEECCCCeeeec
Q 010037 477 CYCPDGKGGIVGTMTG--NCRFYDIKGMQIFDL 507 (519)
Q Consensus 477 ~~spdg~~l~sgs~dg--~v~iwdl~~~~l~~~ 507 (519)
++ +|+..++|+.+| .+..||..+++-..+
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 33 888899999998 788999988765444
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.83 E-value=0.44 Score=51.59 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=66.0
Q ss_pred CCCeeEEEEcCCC-eEEEEe------CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--------
Q 010037 388 SSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-------- 450 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs------~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-------- 450 (519)
...+...+.+|+| .++..- .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3467888999999 444333 243 455555432 22 3333233488899999 87777666432
Q ss_pred ----CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEE---EECCCCe
Q 010037 451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKGMQ 503 (519)
Q Consensus 451 ----g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i---wdl~~~~ 503 (519)
+.+.+.++..+.... .....|..+.|+|||..|+... +|.|++ -....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 233333443333322 3456799999999999888765 577776 4444443
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.65 E-value=3.7 Score=39.34 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=75.8
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCC--cEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg--~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
......+.|..++ ++-+.+.-| .|+.+|+.+++.+....-. ..--.++.. ++.++.-.-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 3456778887777 666666655 7999999999988766532 233344444 34555555678999999999988
Q ss_pred EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
.+........=..++ .||+.|+.......++++|..+.+.
T Consensus 122 ~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 886545555666776 6888888888888999999887654
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=1.1 Score=50.28 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=72.0
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
.....++.|.|.= ..+.+..|+.|++..+... .....+.....++|++|+| .|..++.|-..|++.-|...-....
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~ 233 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKS 233 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceee
Confidence 3456788898865 6677788999998876543 2334456777899999999 9999999999999998875433111
Q ss_pred ee----ccCCCceEEEEEeeCCCEEEEE
Q 010037 465 DY----TDIREIVSAVCYCPDGKGGIVG 488 (519)
Q Consensus 465 ~~----~~~~~~V~~v~~spdg~~l~sg 488 (519)
.. ......|.+|+|-....+|++-
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEe
Confidence 11 1124679999998877776663
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.49 E-value=5.5 Score=43.16 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=65.5
Q ss_pred CC-eEEEEeCC------CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCcEE
Q 010037 399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV 464 (519)
Q Consensus 399 ~~-~L~sgs~D------g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~iwd~~~~~~~ 464 (519)
+| ..++|+.+ .+|..||..+++....-. ....-..++.- ++.+++.|+.|+ +|..||..+.+-.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 35 55666644 457888988887655443 11111223332 678888888776 3788998887655
Q ss_pred eeccCCCceEEEEEe-eCCCEEEEEecCC-----eEEEEECCCCeeeeccc
Q 010037 465 DYTDIREIVSAVCYC-PDGKGGIVGTMTG-----NCRFYDIKGMQIFDLST 509 (519)
Q Consensus 465 ~~~~~~~~V~~v~~s-pdg~~l~sgs~dg-----~v~iwdl~~~~l~~~~~ 509 (519)
...........+... -+++..++|+.|| +|..||..+++-.....
T Consensus 505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 443333333333222 3667778888876 47888887766544433
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.49 E-value=2.6 Score=42.91 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=55.9
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCC-----e--EE-EEecC-----CCcEEEEEEeeCCCCEEEEEeCC------
Q 010037 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----R--CL-RVFSH-----NNYVTSVAFNPVDDNYFISGSID------ 450 (519)
Q Consensus 390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-----~--~~-~~~~h-----~~~V~~v~fsp~d~~~l~sgs~D------ 450 (519)
....|++.+++ |+.++.....++.|.... + .+ ..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45778888888 555555544444455321 1 11 22221 34477899999 88766654411
Q ss_pred -------------CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037 451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 451 -------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs 489 (519)
|.|.-++..+++...+...-.....++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445555555554433332233356899999998876643
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.16 E-value=11 Score=38.24 Aligned_cols=252 Identities=12% Similarity=0.080 Sum_probs=108.3
Q ss_pred eeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037 241 ATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (519)
Q Consensus 241 ~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~ 318 (519)
-+|.++|+.|+. +..+|.-.+|-+.-...+..+ |..+. .......++|+.+.|+-......|+--|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 478899976655 444665555544322222222 22222 1122456778888877665667888889988887
Q ss_pred eceeeccCCCCceEEEeecCCCCe-EEeeccCCceeee-------eeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 319 LDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKT-------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
...+..+..-.....+..+..... +.+.......... ..........++.++... .....+..-...
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-----G~~~~v~~~~~w 189 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-----GERKVVFEDTDW 189 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EEEEEEESS-
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-----CceeEEEecCcc
Confidence 666666655554445544433222 2221111100000 001122222333333332 112333334566
Q ss_pred eeEEEEcCCC--eEEEEe---CCCc-EEEEECCC--CeEEEEec--CCCcEEEEEEeeCCCCEEEEEe-----CCCeEEE
Q 010037 391 VLDLSWSKNG--FLLSSS---ADKT-VRLWQVGI--DRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-----IDGKVRI 455 (519)
Q Consensus 391 V~~l~~sp~~--~L~sgs---~Dg~-V~lWdl~~--~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs-----~Dg~V~i 455 (519)
+..+.|+|.. .|.-|- .+.. -|||-+++ ........ ....+..=-|.| +|..+.--+ .+..|.-
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEe
Confidence 7789999987 444443 2332 36665543 22222222 233455567888 666554322 2445777
Q ss_pred EEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCC----------------eEEEEECCCCeee
Q 010037 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG----------------NCRFYDIKGMQIF 505 (519)
Q Consensus 456 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg----------------~v~iwdl~~~~l~ 505 (519)
+|+.+++...+... .....+.-++||++++-=+.|. -|+++++..++..
T Consensus 269 ~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 269 YDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp E-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred eCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 78887755433222 2345666778998765533332 4556777666543
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.14 E-value=8.4 Score=36.92 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=97.0
Q ss_pred CEEEEEEccCCCEEEEEeCCC--cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037 286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (519)
Q Consensus 286 ~I~~l~fspdg~~LaSgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (519)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+....
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---------------------------------- 91 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---------------------------------- 91 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----------------------------------
Confidence 356788877888888888777 78899999988655444322100
Q ss_pred eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 010037 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~ 443 (519)
++ -+..+...+..+.| .++...+||..+-+.+..+.....=+.++. ++..
T Consensus 92 --------------gE---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 92 --------------GE---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp --------------EE---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred --------------ce---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 00 01112334444444 568899999999999999986666677773 5666
Q ss_pred EEEEeCCCeEEEEEcCCCcEEe---eccCCC---ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 444 FISGSIDGKVRIWEVRRCQVVD---YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 444 l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~---~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
|+......+|+++|..+.+... ...... .++-+.|- +|...|=.-....|...|..+|++..
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 7776667799999998876553 222222 34556664 66666666667778888888887654
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.07 E-value=2.9 Score=45.17 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=71.5
Q ss_pred CCeeEEEEcCCCeEEE-EeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCC----
Q 010037 389 SEVLDLSWSKNGFLLS-SSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRR---- 460 (519)
Q Consensus 389 ~~V~~l~~sp~~~L~s-gs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~---- 460 (519)
..+.-+.-+.-+.++. -+...++.|||.+.+.....- ...+.|.++.|... +++.+++.+....|.+|--..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444444444453333 344567999999988755433 45889999999541 778888888899999985421
Q ss_pred -----CcE---EeeccCC-CceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037 461 -----CQV---VDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 461 -----~~~---~~~~~~~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl 499 (519)
... +....+. .+|...+|.++|.+++.++ +.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111 2233343 6799999999997555443 46778764
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.03 E-value=12 Score=38.52 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEee----C----------------CCEE-
Q 010037 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCP----D----------------GKGG- 485 (519)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp----d----------------g~~l- 485 (519)
...+.+|+.+| ++++.++...=|.|.++|+.++.++. |++.++.= +.|-. . ..+|
T Consensus 307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 34588999999 78988888778999999999988774 55554431 11110 0 1123
Q ss_pred EEEecCCeEEEEECCCCeee
Q 010037 486 IVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 486 ~sgs~dg~v~iwdl~~~~l~ 505 (519)
+-+-.-|.|.||.++.+..+
T Consensus 384 IyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEeccCCeEEEEecCCCCEE
Confidence 33566899999999877643
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.38 Score=44.42 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEE-EccCCCEEEEEeCCCcEEEEecccCe
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-FSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~-fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
-+..+++|+.+|.|.+|++....... .. +..-..+|.++- --.++.+..+++.||.|+.|++.-++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~-d~-----~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHS-DR-----VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHH-Hh-----hhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 34578899999999999987322111 11 111223343332 22355688899999999999986554
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.94 E-value=1.8 Score=47.96 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.1
Q ss_pred ccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCC
Q 010037 386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI 418 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~ 418 (519)
.+...|..+.|+|.+ .|+.-+.|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 345689999999963 888999999999999975
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.81 E-value=4.4 Score=44.92 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred cccceeecCCCCeEEeeecCCeEEEeeCCcc----------cc--cccccccccee--ecCCCCEEEEEEccC---CCEE
Q 010037 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----------SR--ELSSLYTGQEF--LAHEGSILTMKFSLD---GQYL 299 (519)
Q Consensus 237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~----------~~--~~~~~~~~~~l--~~H~~~I~~l~fspd---g~~L 299 (519)
.|..+.++|+|.+||..+..|.+.+ .+... .. ..........+ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3445789999999999887665444 33321 01 00111111111 234568999999995 5789
Q ss_pred EEEeCCCcEEEEecccCe
Q 010037 300 ASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 300 aSgs~Dg~I~iWd~~~~~ 317 (519)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999996543
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.78 E-value=20 Score=40.30 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=77.4
Q ss_pred CeeEEEEcCC-C-eEEEEe----------CCCcEEEEECCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 390 EVLDLSWSKN-G-FLLSSS----------ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 390 ~V~~l~~sp~-~-~L~sgs----------~Dg~V~lWdl~~~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
.|.++.|..+ + +++.|+ ..|.|.|+.+.....++.. .-.+.|.++..- +++++|. .+..|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence 3445557776 4 777765 3477888887764444333 245666666543 4666654 567899
Q ss_pred EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC--CCeeeec
Q 010037 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK--GMQIFDL 507 (519)
Q Consensus 455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~--~~~l~~~ 507 (519)
+|+..+.+.+ .-..+..++.++...-.|..+++|..-+++.+...+ .|.++.+
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 9999998655 456677889999999999999999988876655444 4445543
No 398
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.41 E-value=22 Score=39.95 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=69.4
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC--CCC---EEEEEeCCCeEEEEEc-CCC
Q 010037 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV--DDN---YFISGSIDGKVRIWEV-RRC 461 (519)
Q Consensus 391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~--d~~---~l~sgs~Dg~V~iwd~-~~~ 461 (519)
++....+-+. .++.++.++.+...++..+...... .....|.|+.++|. ..+ +++.|..+..+.+.-. .+.
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~ 569 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL 569 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc
Confidence 3333333444 6666666676766666655522222 24678999999985 334 8889988776555433 333
Q ss_pred cEEe-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEE--ECCCCee
Q 010037 462 QVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKGMQI 504 (519)
Q Consensus 462 ~~~~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw--dl~~~~l 504 (519)
..+. .......|.-.++--|+.+|.++..||.+.-| |..++++
T Consensus 570 ~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 570 ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 3332 12223345556676778999999999997655 4555544
No 399
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.39 E-value=1 Score=42.18 Aligned_cols=61 Identities=11% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEee-------c--------cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQVVDY-------T--------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~-------~--------~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
.+.++++-+.+|.+++||+.+++.+.. . .....|..+.++.+|.-|++-+ +|..+.|+..=
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 788999999999999999999876521 1 3556789999999998777655 58889998753
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.98 E-value=9 Score=42.02 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=74.7
Q ss_pred eeEEEEcCCC---eEEEEeCCCcEEEEECCC-------C-------------eEEEEecCCCcEEEEEEe--eCCCCEEE
Q 010037 391 VLDLSWSKNG---FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYFI 445 (519)
Q Consensus 391 V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~-------~-------------~~~~~~~h~~~V~~v~fs--p~d~~~l~ 445 (519)
|+-|....=| .|+.|..||.|.+|.+++ . ++...+.....++.++++ . ..+++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 4444443322 899999999999996521 0 122233356688999998 6 778899
Q ss_pred EEeCCCeEEEEEcCCC--cEE--eeccCCCceEEEEEeeCC---C---EEEEEecCCeEEEEEC
Q 010037 446 SGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI 499 (519)
Q Consensus 446 sgs~Dg~V~iwd~~~~--~~~--~~~~~~~~V~~v~~spdg---~---~l~sgs~dg~v~iwdl 499 (519)
+++....|.||-.... +.. ....+..-|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9888888888865442 211 122356678899998744 2 6788899999999887
No 401
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.93 E-value=19 Score=40.47 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec----cCC----------------CceEEEEEeeCCCEEE
Q 010037 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKGGI 486 (519)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~----------------~~V~~v~~spdg~~l~ 486 (519)
....|.+|+... -+.+++....||+|.++|..+.+.+... ... ..+..++|||.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 446678888776 7788999999999999998876544222 111 1234578999999999
Q ss_pred EEecCCeEE
Q 010037 487 VGTMTGNCR 495 (519)
Q Consensus 487 sgs~dg~v~ 495 (519)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999865
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.84 E-value=0.54 Score=31.29 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCEEEEEEccCC---CEEEEEeCCCcEEEEeccc
Q 010037 285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 285 ~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~ 315 (519)
++|.+++|+|+. .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 4888887789999999985
No 403
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=9.4 Score=39.77 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEe
Q 010037 389 SEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVF 425 (519)
Q Consensus 389 ~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~ 425 (519)
-.+...+|+|+. .|+.-+.|.+|||||+...+.+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 356778999976 8888889999999999887665433
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.47 E-value=17 Score=36.50 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEEEecCCCcEEEEEEeeC------CCCEEEEEeCCCeEEEEEcCCCc-EE---e-eccCCCceEEEEEeeCCCEEEEEe
Q 010037 421 CLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQ-VV---D-YTDIREIVSAVCYCPDGKGGIVGT 489 (519)
Q Consensus 421 ~~~~~~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~iwd~~~~~-~~---~-~~~~~~~V~~v~~spdg~~l~sgs 489 (519)
++..+.+...++.+.|.+. .+.+|++.-..+.|....+.... +. . .......+..+++.|||.++++-.
T Consensus 245 P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 245 PVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp -SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred cceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3344556677888888752 34566666666788888887543 22 1 233445799999999999888877
Q ss_pred cCCeEE
Q 010037 490 MTGNCR 495 (519)
Q Consensus 490 ~dg~v~ 495 (519)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 788764
No 405
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.28 E-value=3.9 Score=40.47 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=71.0
Q ss_pred ccceeecCCCCeEEeeec-CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeccc
Q 010037 238 HGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIE 315 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-~I~iWd~~~ 315 (519)
-+.++|+||++.+..... .+.|.-+++...............+..+.+..-.++...+|.+-+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 346999999987776654 488888887641111111111111223445666778888888775554444 89999998
Q ss_pred CeeeceeeccCCCCceEEEeecCCCCeEEeec
Q 010037 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (519)
++.+..+..+...++++.|-....+.++....
T Consensus 244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 99999998887777777776665555554443
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=0.51 Score=52.88 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=78.8
Q ss_pred CeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe--------EEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (519)
Q Consensus 390 ~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~--------~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (519)
.|..+...+++ .++..+++-.|..||+++-. +++.- .....+.++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555665 34444555678899987532 12111 14456789999996566677888899999
Q ss_pred EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+.-+...... ........+++++|+|-|+.+++|-..|++.-|...
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 9887654333 334667789999999999999999999999888764
No 407
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.93 E-value=14 Score=37.47 Aligned_cols=97 Identities=8% Similarity=0.022 Sum_probs=51.5
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEe----------------------C
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGS----------------------I 449 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs----------------------~ 449 (519)
.++|++ .++-......|+-.|+.+.+....+. ....+-...|... ++..++..- .
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 344555 44444455677777888876655554 4445545666432 333332211 1
Q ss_pred CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
...|.--|+.+++.-........+..+.|+|....+++-+..
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence 123555677787776666677788889999966666665443
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.78 E-value=18 Score=35.67 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=58.4
Q ss_pred cCCCeeEEEEcCCCeEEEEeCCCcEEEEEC-CCCeEEEE--ec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV--FS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl-~~~~~~~~--~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
-...|..|.|.|++.|......+.|+.=+. ........ .. ....+..++|.+ +....++|+. |.| +.....
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l-~~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTL-LVSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-E-EEESST
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccE-EEeCCC
Confidence 356799999999995555558888888772 22221111 11 233489999998 7777776664 433 334444
Q ss_pred CcEEe----eccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037 461 CQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (519)
Q Consensus 461 ~~~~~----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw 497 (519)
++--+ .......++.|.|.++.+.++.| .+|.+.-|
T Consensus 262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 54332 22345568899998876666654 58877655
No 409
>PHA03098 kelch-like protein; Provisional
Probab=90.76 E-value=13 Score=39.92 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=53.3
Q ss_pred CcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCC--------CeEEEEEcCCCcEEeecc---CCCceEE
Q 010037 409 KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTD---IREIVSA 475 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~---~~~~V~~ 475 (519)
..+..||..+++....-.. ...-.+++. . ++.+++.|+.+ ..+.+||..+.+-..... .......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 4578889887765443221 111112222 2 56677777643 238889988765332221 1111122
Q ss_pred EEEeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037 476 VCYCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 476 v~~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~ 508 (519)
+. .+++.++.|+.+ ..|.+||..+++-..+.
T Consensus 484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 22 377777787764 47899999887654443
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.71 E-value=6.7 Score=42.99 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=50.7
Q ss_pred CCCeeEEEEc--CCC-eEEEEeCCCcEEEEECCCC--eEE--EEecCCCcEEEEEEeeCC--CC---EEEEEeCCCeEEE
Q 010037 388 SSEVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRI 455 (519)
Q Consensus 388 ~~~V~~l~~s--p~~-~L~sgs~Dg~V~lWdl~~~--~~~--~~~~h~~~V~~v~fsp~d--~~---~l~sgs~Dg~V~i 455 (519)
...+++++++ ... +||.+++...|.||-.... +.. ....+...|-+|+|-+.+ +. .+++++..|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3478899998 555 7778888888888755432 111 123367789999998743 22 7888999999999
Q ss_pred EEc
Q 010037 456 WEV 458 (519)
Q Consensus 456 wd~ 458 (519)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 888
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.57 E-value=16 Score=38.71 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=59.6
Q ss_pred eEEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE---
Q 010037 392 LDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV--- 464 (519)
Q Consensus 392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl~~--~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~--- 464 (519)
..+.|+|.. .|+.-.....-.+++++. .+....+...+.|.|.+|.+ ||+.|+.+- ..=.-+|||-......
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Cs 194 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCS 194 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCC
Confidence 356799988 555545444445566654 34445566888999999999 777665543 3346788986654322
Q ss_pred --eeccCCCceEEEEEeeCCCEEEEEec
Q 010037 465 --DYTDIREIVSAVCYCPDGKGGIVGTM 490 (519)
Q Consensus 465 --~~~~~~~~V~~v~~spdg~~l~sgs~ 490 (519)
...+..+.|.++.-.-|.+ +|+++.
T Consensus 195 fcPVFdv~~~Icsi~AT~dsq-VAvaTE 221 (671)
T PF15390_consen 195 FCPVFDVGGYICSIEATVDSQ-VAVATE 221 (671)
T ss_pred cceeecCCCceEEEEEeccce-EEEEec
Confidence 2444556677666555543 555553
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.32 E-value=0.89 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=26.9
Q ss_pred CcEEEEEEeeCCC--CEEEEEeCCCeEEEEEcCC
Q 010037 429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 429 ~~V~~v~fsp~d~--~~l~sgs~Dg~V~iwd~~~ 460 (519)
+.|.++.|+|..+ .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998455 6888888889999999995
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.18 E-value=5.9 Score=38.28 Aligned_cols=115 Identities=10% Similarity=0.173 Sum_probs=84.2
Q ss_pred eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (519)
Q Consensus 385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~ 461 (519)
.+-...+.++.|+|+. .|++..+...-.||=...|+.++++. .-...-.|.+.. ++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3444559999999998 77777777777888778899998886 222345567776 6777777777888988887654
Q ss_pred c-EE-------e--eccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 462 Q-VV-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 462 ~-~~-------~--~~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
. .+ . ...+ +...-.++|.|....|.++-...=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2 11 1 1122 4557789999999999999888878888765
No 414
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=3.3 Score=47.72 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=48.2
Q ss_pred EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
.+.-|...+.+..+.....++.+..-+.+-+|+.........+. +....+.+ ++..++++..||.+..||...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 193 GLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESR-DGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred cccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCcc-CCceEEEEEecCCEEeeecCCCc
Confidence 34445566666666555545555556677777655444333332 11111266 89999999999999999999875
Q ss_pred E
Q 010037 463 V 463 (519)
Q Consensus 463 ~ 463 (519)
.
T Consensus 268 ~ 268 (993)
T KOG1983|consen 268 L 268 (993)
T ss_pred e
Confidence 4
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.81 E-value=4.4 Score=38.92 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=69.2
Q ss_pred CeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE-cCCCc--EE
Q 010037 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV 464 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd-~~~~~--~~ 464 (519)
.+...++++++ .++... .++.-.||-...+...........++.-.|++ ++...+....+...+++. ...+. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68899999999 444433 33444444444444333333344788889999 777777777677777774 33332 22
Q ss_pred --eeccCCCceEEEEEeeCCCEEEEEe---cCCeEEEEEC
Q 010037 465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDI 499 (519)
Q Consensus 465 --~~~~~~~~V~~v~~spdg~~l~sgs---~dg~v~iwdl 499 (519)
.+......|+++.++|||..++... .++.|.+--+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 2332233899999999999887765 3466776654
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.69 E-value=1.6 Score=40.94 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=55.1
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~ 313 (519)
+.+...+++|++-+.+|.+++||+.+.+..+........+. .....|..+.++.+|.-|++-+ +|....|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 34667889999999999999999998877665433222232 3567899999999998777765 578899986
Q ss_pred c
Q 010037 314 I 314 (519)
Q Consensus 314 ~ 314 (519)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.58 E-value=0.052 Score=58.83 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=86.1
Q ss_pred ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEE-----------EEccCCCEEEEEeCCCcEEEE
Q 010037 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-----------KFSLDGQYLASGGEDGTVRVW 311 (519)
Q Consensus 243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l-----------~fspdg~~LaSgs~Dg~I~iW 311 (519)
|-++..++..+-.++.|++.++..... ..+.+|...+..+ ..||||+.+|.+..||.++.|
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 445667888888999999988764332 1234465554443 368999999999999999999
Q ss_pred ecc-c----CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc----cccee
Q 010037 312 KVI-E----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----EKPLH 382 (519)
Q Consensus 312 d~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~ 382 (519)
.+. + ..|+..++.+......+..+.++..... .. ........+...+....+|....|... ...+.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v--~i---~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV--SI---GKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCC--cc---ceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 873 2 2344444545433333332222211111 11 111112222333444555555544432 11122
Q ss_pred EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC
Q 010037 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI 418 (519)
Q Consensus 383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~ 418 (519)
....|.+.|+.+....-- .+++-+.+++|++|.-+.
T Consensus 338 iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 338 IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 223344455443322211 455567788899986443
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.82 E-value=0.4 Score=52.34 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=31.6
Q ss_pred cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeccc
Q 010037 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~LaSgs~Dg~I~iWd~~~ 315 (519)
.-|...||++.--..++..-........-...+.-|.|+| +.-++..+-.++.|++..+.+
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech
Confidence 3467788887643322221111111222223344555555 556666666778888776644
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.52 E-value=13 Score=40.47 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=46.9
Q ss_pred cCCCeeEEEEcC--CC-eEEEEeCCCcEEEEECC---------CCeEEEEec---C-CCcEEEEEEeeCCCCEEEEEeCC
Q 010037 387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---H-NNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 387 h~~~V~~l~~sp--~~-~L~sgs~Dg~V~lWdl~---------~~~~~~~~~---h-~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
..+.|.++.|.. ++ .+++.+..+.|.+|--. +-.+++.+. + ..+|.+..|.+ +|.+++.. +
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G 147 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G 147 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence 457788888864 55 78888888889888531 123444442 3 36799999998 67655543 3
Q ss_pred CeEEEEEcC
Q 010037 451 GKVRIWEVR 459 (519)
Q Consensus 451 g~V~iwd~~ 459 (519)
.++.|+|-.
T Consensus 148 Nqlfv~dk~ 156 (631)
T PF12234_consen 148 NQLFVFDKW 156 (631)
T ss_pred CEEEEECCC
Confidence 578888743
No 420
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.40 E-value=12 Score=34.67 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=68.8
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEECC--CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---C---eEEEE-EcCC---
Q 010037 393 DLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G---KVRIW-EVRR--- 460 (519)
Q Consensus 393 ~l~~sp~~~L~sgs~Dg~V~lWdl~--~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g---~V~iw-d~~~--- 460 (519)
.++-.+.+.|+.+...+.|.+|++. ..+++..|..-+.|..+.++. .|+|++|--.+ . .+|+| |.+.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3333443444444666789999988 446677788778999999999 89999985432 2 56776 2211
Q ss_pred -CcEE--ee---------------------ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 461 -CQVV--DY---------------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 461 -~~~~--~~---------------------~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
.+.+ .. ......+.+++..|-.--|++|+ ++++.+|.+..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 1111 11 12244577888888444466666 4578899876443
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=87.53 E-value=30 Score=34.66 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
...++++.+.+++.++..+..|.+++=....+..-.... ....++.+.+.| ++..+++| .+|.|. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCC
Confidence 346778888888844444566766532233333222111 224578899998 66666555 566554 3344333
Q ss_pred EEee----ccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 463 VVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 463 ~~~~----~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
.-.. .......+.+.|..+++.++ .+..|.|--|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 3221 22234577888887777655 45578877765
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.28 E-value=11 Score=42.27 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=68.7
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEecCCCc---------EEEEEEee---------------CCCCEEEEEeCCCeEE
Q 010037 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY---------VTSVAFNP---------------VDDNYFISGSIDGKVR 454 (519)
Q Consensus 399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~---------V~~v~fsp---------------~d~~~l~sgs~Dg~V~ 454 (519)
++.|+.++.++.|.-.|..+++.+-.+..... ...+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44788888888999999999988877753222 12233321 1234788888999999
Q ss_pred EEEcCCCcEEeeccCCCceE-------------EEEEee--CCCEEEEEec----------CCeEEEEECCCCeee
Q 010037 455 IWEVRRCQVVDYTDIREIVS-------------AVCYCP--DGKGGIVGTM----------TGNCRFYDIKGMQIF 505 (519)
Q Consensus 455 iwd~~~~~~~~~~~~~~~V~-------------~v~~sp--dg~~l~sgs~----------dg~v~iwdl~~~~l~ 505 (519)
-.|..+++........+.|. .+.-.| .+..+++|+. +|.|+-||+++|++.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999998874322222210 111112 2335666643 689999999998753
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.73 E-value=49 Score=35.53 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=61.6
Q ss_pred CCcEEEEECCCCeEEEEec--CCC------------------------------cE-EEEEEeeCCCCEEEEEeCC----
Q 010037 408 DKTVRLWQVGIDRCLRVFS--HNN------------------------------YV-TSVAFNPVDDNYFISGSID---- 450 (519)
Q Consensus 408 Dg~V~lWdl~~~~~~~~~~--h~~------------------------------~V-~~v~fsp~d~~~l~sgs~D---- 450 (519)
++.|.-+|..+++.+-.+. ... .+ ..+++.| ..++++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~ 258 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW 258 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence 6889999999998876653 100 11 1346666 45555555422
Q ss_pred -C-----------eEEEEEcCCCcEE-e--eccCCC-------ceEEEEEeeCCC---EEEEEecCCeEEEEECCCCeee
Q 010037 451 -G-----------KVRIWEVRRCQVV-D--YTDIRE-------IVSAVCYCPDGK---GGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 451 -g-----------~V~iwd~~~~~~~-~--~~~~~~-------~V~~v~~spdg~---~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
+ .|.-.|++++++. + ...|.. ...-+.+..+|+ .++.+..+|.+++.|-.+++++
T Consensus 259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 5667788888877 2 222211 112233335776 7888999999999999999885
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.66 E-value=22 Score=36.17 Aligned_cols=71 Identities=4% Similarity=0.020 Sum_probs=37.1
Q ss_pred ccceeecCCCCeEEeee-----------cCC-eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037 238 HGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs-----------~dg-~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D 305 (519)
...++|.++|.++++-. ..+ +|.+++-....-... ....+...-.....|++.++| .++ +...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34589999999887742 223 777775432221111 111222233445788999888 444 3444
Q ss_pred CcEEEEec
Q 010037 306 GTVRVWKV 313 (519)
Q Consensus 306 g~I~iWd~ 313 (519)
...++.+.
T Consensus 91 ~i~~~~d~ 98 (367)
T TIGR02604 91 DILFLRDK 98 (367)
T ss_pred eEEEEeCC
Confidence 33333343
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.53 E-value=22 Score=37.01 Aligned_cols=153 Identities=12% Similarity=0.185 Sum_probs=83.4
Q ss_pred ccCCCEEE-EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC
Q 010037 293 SLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP 371 (519)
Q Consensus 293 spdg~~La-Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 371 (519)
..+..+|+ .|+.-..++--|+..|+.+..+..+... .+.+.+..... .......+.+-.+..+..+++
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~---------qmt~eqtlvGlS~~svFrIDP 544 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ---------QMTDEQTLVGLSDYSVFRIDP 544 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH---------hcCccceEEeecccceEEecc
Confidence 34555444 4555567777888888888887776554 23333221100 000111122333444444554
Q ss_pred ccccccccceeEee--ccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 010037 372 KVFRLLEKPLHEFQ--GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS 448 (519)
Q Consensus 372 ~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs 448 (519)
++..- .-.+...+ .......+..-..+|+++.++..|-|++||--..+....++ ....|..|.... +|.++++.+
T Consensus 545 R~~gN-Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTC 622 (776)
T COG5167 545 RARGN-KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATC 622 (776)
T ss_pred cccCC-ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEee
Confidence 43220 00011111 11223344444556799999999999999954333333333 567788888888 888777766
Q ss_pred CCCeEEEEEcC
Q 010037 449 IDGKVRIWEVR 459 (519)
Q Consensus 449 ~Dg~V~iwd~~ 459 (519)
. ..|.+-|++
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 477777765
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=27 Score=32.23 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=81.1
Q ss_pred CCCEEEEEeCC--CcEEEEecccCeeeceeeccCCCCc---------eEEEeecCCCCeEEe-----------eccCCc-
Q 010037 295 DGQYLASGGED--GTVRVWKVIEHERLDGFDVQDTDPS---------CLYFTINHLSQLIPI-----------DVDKEK- 351 (519)
Q Consensus 295 dg~~LaSgs~D--g~I~iWd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----------~~~~~~- 351 (519)
+|.++.+.+.- ..|++||+.+++.+..-.+...... .++.........+.. ...+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 55677776653 4699999998887766655521100 000000011111111 111111
Q ss_pred ---eeeeeeeccCCCeeEEEeCCccccccccceeEeecc-CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-
Q 010037 352 ---IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS- 426 (519)
Q Consensus 352 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~- 426 (519)
......+.......+..-+++.+....+...++.+. -..++-+.|-.....+-.=.+..|...|..+++.+..+.
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 011223445556666677777777665555555442 234445555432233333344456666777777766552
Q ss_pred ------------CCCcEEEEEEeeCCCCEEEEEe
Q 010037 427 ------------HNNYVTSVAFNPVDDNYFISGS 448 (519)
Q Consensus 427 ------------h~~~V~~v~fsp~d~~~l~sgs 448 (519)
+....+.|++.|..++++++|-
T Consensus 215 S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 215 SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 4456789999996667888873
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.63 E-value=21 Score=35.15 Aligned_cols=117 Identities=17% Similarity=0.272 Sum_probs=63.2
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc-CCCcE
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQV 463 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~-~~~~~ 463 (519)
-.+.+..+.-+++| +++++..-....-||-........ ..-...|..+.|.| ++.+.+.+ ..|.|+.=+. .....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 34678888889999 555555444455777554333222 23578899999999 77766654 8899988872 22222
Q ss_pred Ee-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 464 VD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 464 ~~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.. .......+..++|.+++...++|+ .|.+ +.....++-++.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~ 267 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQK 267 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceE
Confidence 11 112233478999999987777655 5543 556666666554
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.15 E-value=13 Score=37.33 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=56.8
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEec-----CCCcEEEEEEeeC---CCCEEEEEeCC--------
Q 010037 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID-------- 450 (519)
Q Consensus 390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~---~~~~~-----h~~~V~~v~fsp~---d~~~l~sgs~D-------- 450 (519)
..+.|+|.|+|.|+.+...|.|++++ ..+.. +..+. .......++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999667778899999999 44443 22221 4456899999992 23333333321
Q ss_pred CeEEEEEcCCC-------cEE-e-ec---cCCCceEEEEEeeCCCEEEEEecC
Q 010037 451 GKVRIWEVRRC-------QVV-D-YT---DIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 451 g~V~iwd~~~~-------~~~-~-~~---~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
..|.-|..... +.+ . .. ........|+|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 13443444332 111 1 11 223445779999999776665543
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.02 E-value=3.3 Score=44.66 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCCeEEeeecCCeEEEeeCCccc---cccccc-ccc----ceee-----------cCCCCEEEEEEcc----CCCEEEE
Q 010037 245 PGDHELTLGQRMRRVRVHPVKKQS---RELSSL-YTG----QEFL-----------AHEGSILTMKFSL----DGQYLAS 301 (519)
Q Consensus 245 p~g~~lasgs~dg~I~vw~~~~~~---~~~~~~-~~~----~~l~-----------~H~~~I~~l~fsp----dg~~LaS 301 (519)
++...++.+..||.+......... ...... ... +.+. .-...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 566788888888888777766411 100000 000 0010 1123455666666 6789999
Q ss_pred EeCCCcEEEEecccCeeeceeecc
Q 010037 302 GGEDGTVRVWKVIEHERLDGFDVQ 325 (519)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~ 325 (519)
.+.|+++|+||+.+++++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999997777655
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.60 E-value=17 Score=37.44 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=58.6
Q ss_pred EEEEcCCC-eEEEEeCCCcEEE---EECCC-----CeEEEE----ecCC--CcEEEEEEeeC----------CCCEEEEE
Q 010037 393 DLSWSKNG-FLLSSSADKTVRL---WQVGI-----DRCLRV----FSHN--NYVTSVAFNPV----------DDNYFISG 447 (519)
Q Consensus 393 ~l~~sp~~-~L~sgs~Dg~V~l---Wdl~~-----~~~~~~----~~h~--~~V~~v~fsp~----------d~~~l~sg 447 (519)
.++.+|++ .|+.+..++.|.+ |+... +..... +.+. ..|+++.+-|. +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 45677888 7777777776665 64311 111111 1233 58898888774 45789999
Q ss_pred eCCCeEEEEEcCCCcEEeeccCCCceEEEEEee
Q 010037 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (519)
Q Consensus 448 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp 480 (519)
..+|.|++|......++...-|..+|..+....
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999985544445566778888877654
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.44 E-value=6.8 Score=35.15 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.6
Q ss_pred CCeeEEEEcCCC-------eEEEEeCCCcEEEEECCC
Q 010037 389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI 418 (519)
Q Consensus 389 ~~V~~l~~sp~~-------~L~sgs~Dg~V~lWdl~~ 418 (519)
..|..++|||.| .|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999954 789999999999998663
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.99 E-value=0.1 Score=53.13 Aligned_cols=100 Identities=13% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEE-ec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (519)
Q Consensus 388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~-~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~ 462 (519)
.+...+|+|..++ .++.+-..+.+.+||+.+....+. +. +.... +.|++ ....++.|...|.+.|++-.+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 3456678888877 667777889999999986532211 11 33222 78898 78888889899999999999877
Q ss_pred EEeecc-CCCceEEEEEeeCCCEEEEEecC
Q 010037 463 VVDYTD-IREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 463 ~~~~~~-~~~~V~~v~~spdg~~l~sgs~d 491 (519)
.+-..+ |...+++++|.+.+.. +.++.|
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~v-il~dcd 179 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYV-ILCDCD 179 (615)
T ss_pred hhhhhcccccceeEEEeccccee-eecCcH
Confidence 665444 8889999999998764 344433
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.98 E-value=16 Score=37.43 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=44.7
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~ 317 (519)
|.+.++.+...|.+.=|-++....... .. --....++|.+++||+|.+.||.--.|++|.+.+....+
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVp---iS-fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVP---IS-FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCC---ce-eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 444444444556666676654442221 11 012346799999999999999999999999999985443
No 434
>PRK10115 protease 2; Provisional
Probab=83.80 E-value=78 Score=35.28 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=42.0
Q ss_pred ceeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC------CcE
Q 010037 240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV 308 (519)
Q Consensus 240 ~~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D------g~I 308 (519)
...++|++++|+.+ +..-+|++.++..+..... .+.+ .. ..++|.+|++.|+-...+ ..|
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 35789999988764 4445688888864431111 1111 11 458999999866655432 357
Q ss_pred EEEecccC
Q 010037 309 RVWKVIEH 316 (519)
Q Consensus 309 ~iWd~~~~ 316 (519)
..+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777766
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.62 E-value=51 Score=36.16 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=37.7
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEee
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp 438 (519)
...+..+..+|+. +|+.=...|.|.+-++...+++..+. ....-..++|.-
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 4567888999988 88888999999999888888777775 222233555654
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.30 E-value=38 Score=35.40 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=62.7
Q ss_pred EEeCCCcEEEEECCC-CeEEEEecCCCcEEEEEEee---CCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037 404 SSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNP---VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (519)
Q Consensus 404 sgs~Dg~V~lWdl~~-~~~~~~~~h~~~V~~v~fsp---~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~ 478 (519)
.|-.+..|.-.|.+- +..+.......+++.-.|+. ....|+|+++..|-|++||.-..+.- .+.+....|..+..
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv 611 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV 611 (776)
T ss_pred EeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe
Confidence 344444454445442 33444444444454444443 14569999999999999996544333 46677888999999
Q ss_pred eeCCCEEEEEecCCeEEEEECC
Q 010037 479 CPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+.+|+++++.+ ...+.+-|++
T Consensus 612 ta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 612 TANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ecCCcEEEEee-cceEEEEecc
Confidence 99999877665 4577777875
No 437
>PHA03098 kelch-like protein; Provisional
Probab=81.04 E-value=34 Score=36.74 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=56.4
Q ss_pred eEEEEeCC-----CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCcEEeec
Q 010037 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYT 467 (519)
Q Consensus 401 ~L~sgs~D-----g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~iwd~~~~~~~~~~ 467 (519)
.++.|+.+ ..+..||..+++....-. +...-.+++.. ++.+++.|+.+ ..+..||+.+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55555544 357778887776543322 22111222222 56777777732 35888998775433221
Q ss_pred cCCCce-EEEEEeeCCCEEEEEecC--------CeEEEEECCCCeeeecc
Q 010037 468 DIREIV-SAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 468 ~~~~~V-~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~l~~~~ 508 (519)
....+. ...+...+++.++.|+.+ ..+.+||..+++-..+.
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 111111 112233466777777653 23889999887655443
No 438
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.88 E-value=15 Score=39.89 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=70.8
Q ss_pred eEEEEcCCCeEEEEeCC------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCe-----EEEEEcCC
Q 010037 392 LDLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-----VRIWEVRR 460 (519)
Q Consensus 392 ~~l~~sp~~~L~sgs~D------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-----V~iwd~~~ 460 (519)
.+++...+...++|+.| .++..||..+++....-.-...-..+.....++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34444444477888888 45788999888866543322222222333337889999999874 77788776
Q ss_pred CcEEeeccCCCceEEEE-EeeCCCEEEEEecCC------eEEEEECCCCeeeecc
Q 010037 461 CQVVDYTDIREIVSAVC-YCPDGKGGIVGTMTG------NCRFYDIKGMQIFDLS 508 (519)
Q Consensus 461 ~~~~~~~~~~~~V~~v~-~spdg~~l~sgs~dg------~v~iwdl~~~~l~~~~ 508 (519)
.+--............+ -.-+|+..++|+.++ ++..||..+++-..+.
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 54332222222222222 233788888888654 5789999887765544
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.64 E-value=3.4 Score=44.55 Aligned_cols=72 Identities=10% Similarity=0.213 Sum_probs=50.1
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
.....+++|+-+| .++-++.+..||.|++|+....+.........+-..+.|...| |++++.|..+.-|.-.
T Consensus 12 k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 3456788999999 9999999999999999998665543333333344456665554 5666667666666543
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.41 E-value=8.9 Score=34.38 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.8
Q ss_pred ceEEEEEeeCC------CEEEEEecCCeEEEEECCC
Q 010037 472 IVSAVCYCPDG------KGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 472 ~V~~v~~spdg------~~l~sgs~dg~v~iwdl~~ 501 (519)
.|.+++|+|-| -+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999955 3688999999999998774
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.82 E-value=80 Score=32.73 Aligned_cols=148 Identities=13% Similarity=0.229 Sum_probs=88.8
Q ss_pred eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC---C-C-eEEEEeCCCcEEEEECCCC--------
Q 010037 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGID-------- 419 (519)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~-~-~L~sgs~Dg~V~lWdl~~~-------- 419 (519)
.....+.++..+.+.++.+.........+..-..-..+|..|+.-+ . . ..++.=.-+.+.||.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3445566777788888877543322222222223456788777643 1 1 3333355677888877311
Q ss_pred --eEEEEecCC--CcEEEEEEeeCC----CCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037 420 --RCLRVFSHN--NYVTSVAFNPVD----DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (519)
Q Consensus 420 --~~~~~~~h~--~~V~~v~fsp~d----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d 491 (519)
+....+.|. .....++.-|.. ..++++-+.||++.+|+-+...........--...++|.|.-..+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 111222332 233444444422 368889999999999998876544433333344557889988899999988
Q ss_pred CeEEEEECC
Q 010037 492 GNCRFYDIK 500 (519)
Q Consensus 492 g~v~iwdl~ 500 (519)
..+.-|...
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 888888753
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.37 E-value=0.27 Score=50.24 Aligned_cols=137 Identities=21% Similarity=0.305 Sum_probs=93.2
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEecccCeee
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERL 319 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~I~iWd~~~~~~~ 319 (519)
..|.|.+.-++.++.+..+..||-......-. .-++....|+|..++..++. +-..+.+.+||+.+....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceeccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 46788888899999999999998654332111 12445667889888875544 456789999999654311
Q ss_pred ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (519)
++... ..|.... +.|++.
T Consensus 111 -qLE~g-----------------------------------------------------------g~~s~sl--l~wsKg 128 (615)
T KOG2247|consen 111 -QLESG-----------------------------------------------------------GTSSKSL--LAWSKG 128 (615)
T ss_pred -HHhcc-----------------------------------------------------------CcchHHH--HhhccC
Confidence 11000 0011111 568887
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D 450 (519)
. .++.+...+.+.|++..+.+.+...+ |...+++++|.+ .++.+.++.|
T Consensus 129 ~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd 179 (615)
T KOG2247|consen 129 TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCD 179 (615)
T ss_pred CccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcH
Confidence 7 88888889999999999888777776 999999999998 4455555444
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.22 E-value=12 Score=34.50 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.8
Q ss_pred CEEEEEeCCCeEEEEEcCC--CcEEeeccCCCceEEEEEeeCCCEEEEEecC---C---eEEEE
Q 010037 442 NYFISGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---G---NCRFY 497 (519)
Q Consensus 442 ~~l~sgs~Dg~V~iwd~~~--~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d---g---~v~iw 497 (519)
..|..+....+|.+|++.+ .+++.....-+.|..+.++.-|++|++--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 4444446677899999983 4555555555889999999999999995432 2 56666
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.87 E-value=24 Score=33.11 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=66.8
Q ss_pred ceeecCCCCeEE-eeecCCeEEEeeCCccccccccccccceeec---CCC-CEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 240 SATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLA---HEG-SILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 240 ~~~~sp~g~~la-sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~---H~~-~I~~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
.++|+.+.+.+. +-+.+-.|.-|++.-..-.++.....-.++. ... .--.++...+|++.+++-.-++|...|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 477887776554 4556677877886533322222211111111 011 11234556688888888888999999999
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLI 343 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (519)
+|+.+.++.++...+++++|-......++
T Consensus 242 tGK~L~eiklPt~qitsccFgGkn~d~~y 270 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGKNLDILY 270 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCCCccEEE
Confidence 99999999999888888887665545444
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=21 Score=41.48 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=51.4
Q ss_pred cCCCeeEEEEcCCCeEEEEeCCCcEEEEEC----CCC----eE-----------------EEEe-cCCCcEEEEEEeeCC
Q 010037 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV----GID----RC-----------------LRVF-SHNNYVTSVAFNPVD 440 (519)
Q Consensus 387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl----~~~----~~-----------------~~~~-~h~~~V~~v~fsp~d 440 (519)
....|.|+....+|.+.-++.||. ||.+ ..+ +| ++.. .+..+|..|.... .
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 356789999888887777778884 4443 111 11 1112 2567899999987 7
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 010037 441 DNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 441 ~~~l~sgs~Dg~V~iwd~~~ 460 (519)
-+.+.+-+..|+|++||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 78899999999999999976
No 446
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=76.12 E-value=1.1e+02 Score=32.48 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=56.3
Q ss_pred eEEEEeCCCcEEEEECCCCe---EEEEecC-CCcEEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCcEEeeccCCCceE
Q 010037 401 FLLSSSADKTVRLWQVGIDR---CLRVFSH-NNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQVVDYTDIREIVS 474 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~~~~---~~~~~~h-~~~V~~v~fsp~d~~~l~sgs~--Dg~V~iwd~~~~~~~~~~~~~~~V~ 474 (519)
.++.+..+|.+....+.... .+..+.. ....+++.+-..++.+|+.|+. |+.+.-|....-+++.....-++|.
T Consensus 224 ~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~ 303 (504)
T PF10433_consen 224 RILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIV 303 (504)
T ss_dssp EEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEE
T ss_pred EEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCcc
Confidence 88899999999988776544 2333333 5566777776511237777776 5566666655555666666677888
Q ss_pred EEEEeeC---CC-------EEEEEe---cCCeEEEEE
Q 010037 475 AVCYCPD---GK-------GGIVGT---MTGNCRFYD 498 (519)
Q Consensus 475 ~v~~spd---g~-------~l~sgs---~dg~v~iwd 498 (519)
.++.-+. +. .|++++ .+|.+++..
T Consensus 304 D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 304 DFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred ceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 8888642 11 455544 367777763
No 447
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.79 E-value=1.5e+02 Score=33.57 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCcEEEEECCCCeEEEEecCC----------C--------cE-EEEEEeeCCCCEEEEEe------------------CC
Q 010037 408 DKTVRLWQVGIDRCLRVFSHN----------N--------YV-TSVAFNPVDDNYFISGS------------------ID 450 (519)
Q Consensus 408 Dg~V~lWdl~~~~~~~~~~h~----------~--------~V-~~v~fsp~d~~~l~sgs------------------~D 450 (519)
+|.|+-+|+++++.+-.+... + .+ ...+++| ...+++.+. ..
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCccccc
Confidence 688999999999988766310 0 01 2334455 333333221 13
Q ss_pred CeEEEEEcCCCcEE-eec--cCC-------CceEEEEEee-CCC---EEEEEecCCeEEEEECCCCeeee
Q 010037 451 GKVRIWEVRRCQVV-DYT--DIR-------EIVSAVCYCP-DGK---GGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 451 g~V~iwd~~~~~~~-~~~--~~~-------~~V~~v~~sp-dg~---~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
+.|.-.|++++++. ++. .|. ....-+.+.. +|+ .++.++.+|.+.++|-++++.+-
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 45666788888776 222 221 1111122333 664 78899999999999999988653
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.05 E-value=88 Score=30.73 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=112.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeccc------C-eeeceeecc-----CCCCceEEEeecCCCCeEEeeccCCcee
Q 010037 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIE------H-ERLDGFDVQ-----DTDPSCLYFTINHLSQLIPIDVDKEKID 353 (519)
Q Consensus 286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~------~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (519)
.-|.|+++|.+.+-++...-+...+||... . .....+... ...++.+.|..... +.+. ......
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~---F~vt-~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT---FVVS-GEGITG 99 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc---eEEc-CCCccc
Confidence 457899999998888888889999999861 1 111122211 12344444443321 1111 111112
Q ss_pred eeeeeccCCCeeEEEeCCccccccc-cceeEeec-cCC-CeeEEEEcCC--C-eEEEE-eCCCcEEEEECCCCeEEE--E
Q 010037 354 KTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQG-HSS-EVLDLSWSKN--G-FLLSS-SADKTVRLWQVGIDRCLR--V 424 (519)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~-h~~-~V~~l~~sp~--~-~L~sg-s~Dg~V~lWdl~~~~~~~--~ 424 (519)
....+..+.++++.-|.+.+-...- .....+.. ..+ --..+++... + +|+.+ =..++|.|+|-.-.+... .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 2334667788888888865433210 01111221 112 2344555533 3 44444 367889999854332210 1
Q ss_pred ec-----------------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--ccCCCceEEEEEee-----
Q 010037 425 FS-----------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP----- 480 (519)
Q Consensus 425 ~~-----------------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~~~V~~v~~sp----- 480 (519)
|. ..-+|+-..-.+ +...=+.|..-|.|-+||+...-+.++ .+.-...+.|+..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCC
Confidence 11 111222222233 223333444557899999875444433 22233456677765
Q ss_pred -CCCEEEEEecCCeEEEEECCCCeee
Q 010037 481 -DGKGGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 481 -dg~~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.|.+|+---.||+|..||..+++.+
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCcee
Confidence 5666776667999999999876643
No 449
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.47 E-value=38 Score=33.04 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=60.5
Q ss_pred CcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe------CCCeEEEEEcCCCcEEeecc-----CCCceEEE
Q 010037 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS------IDGKVRIWEVRRCQVVDYTD-----IREIVSAV 476 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs------~Dg~V~iwd~~~~~~~~~~~-----~~~~V~~v 476 (519)
..|++||..+.+....-. -.+.|+.+.|.. +.++++.|. ....+..||+.+..-..+.. ..++|+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 459999998887765553 678899999986 677777765 35579999998876543333 35788888
Q ss_pred EEee-CCC-EEEEEe-cCC--eEEEEECC
Q 010037 477 CYCP-DGK-GGIVGT-MTG--NCRFYDIK 500 (519)
Q Consensus 477 ~~sp-dg~-~l~sgs-~dg--~v~iwdl~ 500 (519)
.+.. |+. ..+.|. .+| .|..||=.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCC
Confidence 7743 443 333333 333 35666543
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=74.34 E-value=1.6e+02 Score=33.35 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=75.7
Q ss_pred ccCCCeeEEEEc---C--CC--eEEEEeCCCcEEEEE------CCC---------CeEEEEec----CCCcEEEEEEeeC
Q 010037 386 GHSSEVLDLSWS---K--NG--FLLSSSADKTVRLWQ------VGI---------DRCLRVFS----HNNYVTSVAFNPV 439 (519)
Q Consensus 386 ~h~~~V~~l~~s---p--~~--~L~sgs~Dg~V~lWd------l~~---------~~~~~~~~----h~~~V~~v~fsp~ 439 (519)
.-..+|..|+|. . +. .++..-....+.|+. +.. ..++..+. ...+...|+|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 11 344444455666666 111 12334443 3457789999998
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCc-----EEe-eccCC----------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037 440 DDNYFISGSIDGKVRIWEVRRCQ-----VVD-YTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~~~-----~~~-~~~~~----------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~ 503 (519)
+...||.....|...||++.... .+. ..... ..-..+.|.++-+.|++++. ..+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 88899999999999999992211 111 11111 22347889888888888774 468899998765
Q ss_pred e
Q 010037 504 I 504 (519)
Q Consensus 504 l 504 (519)
.
T Consensus 236 ~ 236 (765)
T PF10214_consen 236 Q 236 (765)
T ss_pred c
Confidence 4
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.78 E-value=11 Score=40.59 Aligned_cols=66 Identities=9% Similarity=0.108 Sum_probs=41.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCC----CcEEe---ec--------------------cCCCceEEEEEee----CCCEEEEE
Q 010037 440 DDNYFISGSIDGKVRIWEVRR----CQVVD---YT--------------------DIREIVSAVCYCP----DGKGGIVG 488 (519)
Q Consensus 440 d~~~l~sgs~Dg~V~iwd~~~----~~~~~---~~--------------------~~~~~V~~v~~sp----dg~~l~sg 488 (519)
+...|+.+..||.|....... +.... .. .....+.+++.++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777777788777776654 11110 00 0123456666666 77899999
Q ss_pred ecCCeEEEEECCCCeee
Q 010037 489 TMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 489 s~dg~v~iwdl~~~~l~ 505 (519)
+.|+.+|+||+.+++++
T Consensus 237 ~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCL 253 (547)
T ss_dssp ETTSEEEEEETTTTCEE
T ss_pred eCCCeEEEEECCCCeEE
Confidence 99999999999999883
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.73 E-value=37 Score=28.98 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=48.3
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEcCCC--------cEEeeccCCCceEEEEEee-----CCCEEEEEecCCeEEEEEC
Q 010037 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRC--------QVVDYTDIREIVSAVCYCP-----DGKGGIVGTMTGNCRFYDI 499 (519)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--------~~~~~~~~~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwdl 499 (519)
.-.|.. ....|+.++.-|+|.|++.... ..+.+......|++++-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345655 4557888889999999987643 2345566677888887655 345677776 457899999
Q ss_pred CCCe
Q 010037 500 KGMQ 503 (519)
Q Consensus 500 ~~~~ 503 (519)
..+.
T Consensus 81 ~~N~ 84 (136)
T PF14781_consen 81 ENNS 84 (136)
T ss_pred ccCc
Confidence 8654
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.55 E-value=1.5e+02 Score=32.73 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (519)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~ 464 (519)
...+..+..+| +..+|+--...|.|.+-++...++.
T Consensus 216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhh
Confidence 35678889999 8999999999999999888766554
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.03 E-value=47 Score=38.60 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=26.4
Q ss_pred eeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037 479 CPDGKGGIVGTMTGNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 479 spdg~~l~sgs~dg~v~iwdl~~~~l~~~~ 508 (519)
++++..++++..||.+.+||...++++...
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~ 272 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKLQIAR 272 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCceeecC
Confidence 788999999999999999999998875443
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=88 Score=32.41 Aligned_cols=115 Identities=13% Similarity=0.173 Sum_probs=74.7
Q ss_pred cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (519)
Q Consensus 387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~ 460 (519)
..++|.++.|++++ .|+.--.+++|.+.+....+.+.... .+..|....|.. + .-+|.-+..| +-+|-+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEch
Confidence 35689999999999 88889999999999986554443332 344588889986 3 4455444333 55665433
Q ss_pred --CcEEeeccCCCceEEEEEeeCCCEEEEEec--CCeEEEEECCCCee
Q 010037 461 --CQVVDYTDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKGMQI 504 (519)
Q Consensus 461 --~~~~~~~~~~~~V~~v~~spdg~~l~sgs~--dg~v~iwdl~~~~l 504 (519)
..+.....+.-.|+-..|+|+-+.++.++. .+++.=+.++++-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 233335566777888899998887555543 33344444444433
No 456
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=72.79 E-value=32 Score=35.44 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=54.7
Q ss_pred EEEEEEccCCCEEEEEe--------------------CCCcEEEEecccCeeeceeeccCCCCce--EEEeecCCCCe--
Q 010037 287 ILTMKFSLDGQYLASGG--------------------EDGTVRVWKVIEHERLDGFDVQDTDPSC--LYFTINHLSQL-- 342 (519)
Q Consensus 287 I~~l~fspdg~~LaSgs--------------------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-- 342 (519)
-...-|.|..+.++|.. .-.++++||+.+.+.++.+......... +.|..+.....
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 34566777777777643 3457999999999999999887654333 33333322211
Q ss_pred EEeeccCCceeeeeeeccCCCe-----eEEEeCCcc---ccccccceeEeeccCCCeeEEEEcCCC-eE-EEEeCCCcEE
Q 010037 343 IPIDVDKEKIDKTKSLRKSSDL-----TCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVR 412 (519)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~sgs~Dg~V~ 412 (519)
+.+.+.. .++.+....++ .++.++... +.+ ...+..+..-..-|++|..|.+. +| +++=.+|.|+
T Consensus 263 vg~aLss----~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l-p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvr 337 (461)
T PF05694_consen 263 VGCALSS----SIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL-PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVR 337 (461)
T ss_dssp EEEE--E----EEEEEEE-ETTEEEEEEEEEE--EE--SS----GGGGGG-EE------EEE-TTS-EEEEEETTTTEEE
T ss_pred EEEeccc----eEEEEEEcCCCCeeeeEEEECCCcccCcccc-cccccccccCCCceEeEEEccCCCEEEEEcccCCcEE
Confidence 1111111 11111110010 111111110 000 01111222234568999999998 44 5556899999
Q ss_pred EEECCCC
Q 010037 413 LWQVGID 419 (519)
Q Consensus 413 lWdl~~~ 419 (519)
.||+...
T Consensus 338 qYDISDP 344 (461)
T PF05694_consen 338 QYDISDP 344 (461)
T ss_dssp EEE-SST
T ss_pred EEecCCC
Confidence 9999763
No 457
>PHA02713 hypothetical protein; Provisional
Probab=72.79 E-value=43 Score=36.25 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=58.0
Q ss_pred eEEEEeCC------CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCcEEeec
Q 010037 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT 467 (519)
Q Consensus 401 ~L~sgs~D------g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~ 467 (519)
.++.|+.+ ..+..||..++.....-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+=....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666643 347788988876543322 11111122222 677888888764 4888998876433222
Q ss_pred cCCCceEE-EEEeeCCCEEEEEecCC-----------------------eEEEEECCCCeeeec
Q 010037 468 DIREIVSA-VCYCPDGKGGIVGTMTG-----------------------NCRFYDIKGMQIFDL 507 (519)
Q Consensus 468 ~~~~~V~~-v~~spdg~~l~sgs~dg-----------------------~v~iwdl~~~~l~~~ 507 (519)
....+... .+..-+|+..+.|+.++ .+..||..+++-..+
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 21111111 11223788888887653 478899887765443
No 458
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=72.72 E-value=91 Score=29.81 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=78.1
Q ss_pred ccceeecCCCCeEEeee---cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe-c
Q 010037 238 HGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK-V 313 (519)
Q Consensus 238 ~~~~~~sp~g~~lasgs---~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd-~ 313 (519)
..+.++++++..+|.-. ....++++......... +.+ ..+..-.|++++...+....+...+++. .
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------ccC--CccccccccCCCCEEEEEcCCCceEEEEec
Confidence 44579999999887755 44556666554322211 122 2677789999987766666666677774 2
Q ss_pred ccCee-eceeeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037 314 IEHER-LDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (519)
Q Consensus 314 ~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (519)
.++.. ...+..... .+..+.++++.....+..............+....++ .......++.........
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--------~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--------VPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--------CcceeccceEecccccCc
Confidence 22221 111222211 3444555555544433332222222222222222221 011112233333344678
Q ss_pred eeEEEEcCCC-eEEEE-eCCCcEEE
Q 010037 391 VLDLSWSKNG-FLLSS-SADKTVRL 413 (519)
Q Consensus 391 V~~l~~sp~~-~L~sg-s~Dg~V~l 413 (519)
+++++|.+++ +++.+ ..+..+..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE
Confidence 9999999999 33333 34443433
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=71.26 E-value=72 Score=31.98 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEE-EECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRL-WQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~l-Wdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~ 465 (519)
...+.++.+.|++.++..+..|.+.. ++-......... .....++++.+.| ++..+++| ..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45688899999885555555565543 222211222222 2456789999999 78777765 45766533334443222
Q ss_pred ---ec--cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037 466 ---YT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 466 ---~~--~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
.. .....+.++.+.|++..++ ++.+|.+. .....++-++
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~ 293 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWE 293 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCe
Confidence 11 1224578899999887555 45567654 3445455444
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.89 E-value=1.1e+02 Score=31.45 Aligned_cols=112 Identities=10% Similarity=0.045 Sum_probs=62.1
Q ss_pred eeEEEEcCCCeEEEEeCCCcEE-EEECCCCe-EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-----E
Q 010037 391 VLDLSWSKNGFLLSSSADKTVR-LWQVGIDR-CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----V 463 (519)
Q Consensus 391 V~~l~~sp~~~L~sgs~Dg~V~-lWdl~~~~-~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-----~ 463 (519)
...+..++++.++..+..|.+. -||-.... ..........++.+.|.+ ++.+++++ .+|.+. |....++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 4455667777444444445433 34433221 222333556789999998 78877766 455543 3333332 1
Q ss_pred Ee---eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 464 VD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 464 ~~---~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.. .......++++.|.+++..+++ +..|.+... ...++.++.
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~ 362 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKR 362 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeE
Confidence 11 1112345899999988875555 557766555 345555444
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.81 E-value=14 Score=23.61 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=20.4
Q ss_pred ccCCCceEEEEEeeCCCEEEEEec-C--CeEEEE
Q 010037 467 TDIREIVSAVCYCPDGKGGIVGTM-T--GNCRFY 497 (519)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l~sgs~-d--g~v~iw 497 (519)
......-...+|+|||+.|+-.+. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556788999999998876654 4 555555
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.93 E-value=21 Score=22.89 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCC-eE-EEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEE
Q 010037 398 KNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436 (519)
Q Consensus 398 p~~-~L-~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~f 436 (519)
|++ +| ++.-.+++|.++|..+++.+..+.-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 345 44 4455688999999999988887764443444444
No 463
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.92 E-value=89 Score=33.09 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=57.9
Q ss_pred EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCc----EEEEEEeeCCCCEEEEEeC-------------CCeEEEE
Q 010037 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY----VTSVAFNPVDDNYFISGSI-------------DGKVRIW 456 (519)
Q Consensus 394 l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~----V~~v~fsp~d~~~l~sgs~-------------Dg~V~iw 456 (519)
+...++|.|+.++. ..++.+|+- |+.+........ -..+..-| +|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678885555554 788888875 555555543221 35567778 8898888771 1235566
Q ss_pred EcCCCcEEe---eccC----C---------------------CceEEEEEee-CCCEEEEEecCCeEEEEECCCCeeee
Q 010037 457 EVRRCQVVD---YTDI----R---------------------EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKGMQIFD 506 (519)
Q Consensus 457 d~~~~~~~~---~~~~----~---------------------~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~~~l~~ 506 (519)
| .+++++. ...| . -.++++.+.+ ++.+|+++-....|...|.+++++.-
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 6 6666652 1111 0 1388999999 55555555555688889988887653
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.05 E-value=17 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=25.3
Q ss_pred CCCEEEE-EeCCCeEEEEEcCCCcEEeeccCCCceEEEEE
Q 010037 440 DDNYFIS-GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478 (519)
Q Consensus 440 d~~~l~s-gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~ 478 (519)
++++|++ .-.+++|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4555554 44688999999998887754444444445554
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=67.61 E-value=1.3e+02 Score=29.60 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=111.7
Q ss_pred eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeec-----CCCCEEEEEEccCCC------------EEEEEe
Q 010037 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-----HEGSILTMKFSLDGQ------------YLASGG 303 (519)
Q Consensus 241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~-----H~~~I~~l~fspdg~------------~LaSgs 303 (519)
++++|.+.+-++....+...+|+.......-......-++.. -....+.+.|+.... .++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 789999988888888899999998622111000000111111 223566777764322 256788
Q ss_pred CCCcEEEEecccCee---eceeeccCC----CCceEEEeec-CCCCeEEeeccCCceeeeeeeccC--CCeeEEEeCCcc
Q 010037 304 EDGTVRVWKVIEHER---LDGFDVQDT----DPSCLYFTIN-HLSQLIPIDVDKEKIDKTKSLRKS--SDLTCVVLPPKV 373 (519)
Q Consensus 304 ~Dg~I~iWd~~~~~~---~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~ 373 (519)
+||+|.-|.-.-+.. ...+..... ....+++... ....++..++...+++........ ..+. ..++.+
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~--F~DP~i 185 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS--FIDPAL 185 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC--ccCCCC
Confidence 999999998533222 111111111 1122223222 234445555444433321110000 0000 000000
Q ss_pred ccccccc--eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCC---cEEEEEEeeC-----CCC
Q 010037 374 FRLLEKP--LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---YVTSVAFNPV-----DDN 442 (519)
Q Consensus 374 ~~~~~~~--~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~---~V~~v~fsp~-----d~~ 442 (519)
.. .-.| +..+.+ .-.|+-..-.++. .=+.+..-|.|-+||+. ++.++.+.+.. .-+.|+..|. .+.
T Consensus 186 Pa-gyAPFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 186 PA-GYAPFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CC-CCCCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 0000 000000 0001111111111 22334455789999976 55666665333 3456666552 467
Q ss_pred EEEEEeCCCeEEEEEcCCCcEE-eeccCC------CceEEEEEee
Q 010037 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIR------EIVSAVCYCP 480 (519)
Q Consensus 443 ~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~------~~V~~v~~sp 480 (519)
+|+---.||+|..||..+++.+ .+.... ..++.|+|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7777778999999999988766 333322 2356777755
No 466
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=1.3e+02 Score=34.11 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=48.7
Q ss_pred eecCCCCeEEeeecCCeEEEeeCCcccccccccc------ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLY------TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (519)
Q Consensus 242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~------~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~ 315 (519)
++...|+.+.+|+.+|.+.+|.+........... ....+ ++.+|..|...+.-.+++.- .|+.|.++++.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLIL-SDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchhee-cCCcceeeecCc
Confidence 5556788999999999999999876533222111 11112 36788888887765555544 466788888766
Q ss_pred Cee
Q 010037 316 HER 318 (519)
Q Consensus 316 ~~~ 318 (519)
-+.
T Consensus 98 ~~~ 100 (877)
T KOG2063|consen 98 LEP 100 (877)
T ss_pred ccc
Confidence 543
No 467
>PF15477 SMAP: Small acidic protein family
Probab=64.98 E-value=4.4 Score=30.25 Aligned_cols=13 Identities=62% Similarity=1.050 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhc
Q 010037 61 VNERRSKFLKLMG 73 (519)
Q Consensus 61 ~~~r~~~~~~~~~ 73 (519)
=.||..|||+.||
T Consensus 10 d~~rk~KFlRLMG 22 (69)
T PF15477_consen 10 DSERKEKFLRLMG 22 (69)
T ss_pred CHHHHHHHHHHhc
Confidence 4799999999999
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.95 E-value=75 Score=33.45 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=49.7
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCeEEEEEc---------CCCcEE---e---------eccCCCceEEEEEeeCC---CE
Q 010037 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEV---------RRCQVV---D---------YTDIREIVSAVCYCPDG---KG 484 (519)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~---------~~~~~~---~---------~~~~~~~V~~v~~spdg---~~ 484 (519)
-.|..|..+| .|..++-.+.+|.+.++=. ..++.. . .....-.+..++|+|+. ..
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4577888899 7888888888886555431 223211 1 11122346678999976 56
Q ss_pred EEEEecCCeEEEEECCCCe
Q 010037 485 GIVGTMTGNCRFYDIKGMQ 503 (519)
Q Consensus 485 l~sgs~dg~v~iwdl~~~~ 503 (519)
|+.-+.|..||+||+....
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 8888889999999998654
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.92 E-value=1.9e+02 Score=30.42 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=36.4
Q ss_pred ccCCCeeEEEEcCCCeEEEEeC-CCcEEEEECCCCeEE--EEec------CCCcEEEEEEee
Q 010037 386 GHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCL--RVFS------HNNYVTSVAFNP 438 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~~L~sgs~-Dg~V~lWdl~~~~~~--~~~~------h~~~V~~v~fsp 438 (519)
..-...+.|+|.|++.|+.+.. .|.|++++..++... ..+. .......|+++|
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 3455678999999995555555 699999986654322 1111 246689999998
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.00 E-value=1.9e+02 Score=30.08 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEec
Q 010037 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLASGGEDGTVRVWKV 313 (519)
Q Consensus 246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~LaSgs~Dg~I~iWd~ 313 (519)
+...+++|+..|.++||+..........+... ..-..+|..|..-+ +...||.- .-..+.||.+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v 104 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSV 104 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEE
Confidence 45689999999999999986444332222111 12346888876532 22344443 4567778877
No 471
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=63.85 E-value=2.6e+02 Score=31.68 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEe-cCC----------CcEEEEEEeeCCCCEEEEEeCC
Q 010037 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVF-SHN----------NYVTSVAFNPVDDNYFISGSID 450 (519)
Q Consensus 389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~-----~~~~~-~h~----------~~V~~v~fsp~d~~~l~sgs~D 450 (519)
.+..+++|+|.. .||+....|...||++.... .+... .+. +.-..|.|.+ +.+.|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-
Confidence 467899999976 99999999999999992111 11111 122 2234788887 6666766654
Q ss_pred CeEEEEEcCCCcEE---eeccCCCceEEEEEeeC--CCEEEEEecCCeEEEEECCC
Q 010037 451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 451 g~V~iwd~~~~~~~---~~~~~~~~V~~v~~spd--g~~l~sgs~dg~v~iwdl~~ 501 (519)
..+.++|+.+.... ........|..+.-+|. +..++. + ...|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccC
Confidence 57899999887553 33445567888888776 333333 2 24566666665
No 472
>PHA02790 Kelch-like protein; Provisional
Probab=62.21 E-value=2.2e+02 Score=30.20 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=54.9
Q ss_pred CC-eEEEEeCC---CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc---C
Q 010037 399 NG-FLLSSSAD---KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---I 469 (519)
Q Consensus 399 ~~-~L~sgs~D---g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~ 469 (519)
+| ..+.|+.+ ..+..||..+.+....-. ....-.+++ .- ++.+.+.| |.+.+||..+.+=..... .
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~-~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VF-GRRLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EE-CCEEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 34 55666644 347789988876654332 111111222 22 56677776 457789987754332221 1
Q ss_pred CCceEEEEEeeCCCEEEEEecC-----CeEEEEECCCCee
Q 010037 470 REIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKGMQI 504 (519)
Q Consensus 470 ~~~V~~v~~spdg~~l~sgs~d-----g~v~iwdl~~~~l 504 (519)
......+ --+|+..++|+.+ ..|..||..+++-
T Consensus 437 r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 437 RDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 2222222 3477888888764 3578888877653
No 473
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=60.76 E-value=2.1e+02 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.8
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~ 501 (519)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899998889999999999999999973
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=60.08 E-value=1.9e+02 Score=28.82 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=65.2
Q ss_pred CeeEEEEcCCC-eEEEEeCC------CcEEEEECCCCeEEEEe----------------cCCCcEEEEEEeeCCCCEEEE
Q 010037 390 EVLDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCLRVF----------------SHNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 390 ~V~~l~~sp~~-~L~sgs~D------g~V~lWdl~~~~~~~~~----------------~h~~~V~~v~fsp~d~~~l~s 446 (519)
..-+|++.+++ ++++.-.+ ..|+.++.. ++.+..+ ..+...-+|+++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 44567776667 66665556 678888866 5554433 1345678999999 8886665
Q ss_pred EeC-----CC--e-------EEEEE--cCC-CcEE-----eecc-----CCCceEEEEEeeCCCEEEEEe-----cCCeE
Q 010037 447 GSI-----DG--K-------VRIWE--VRR-CQVV-----DYTD-----IREIVSAVCYCPDGKGGIVGT-----MTGNC 494 (519)
Q Consensus 447 gs~-----Dg--~-------V~iwd--~~~-~~~~-----~~~~-----~~~~V~~v~~spdg~~l~sgs-----~dg~v 494 (519)
+.. |+ . ++|+. ..+ ++.. .... ....|+.+.+-+++++|+.== ....+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 443 22 1 55554 443 2111 1111 456789999999999777622 23345
Q ss_pred EEEECC
Q 010037 495 RFYDIK 500 (519)
Q Consensus 495 ~iwdl~ 500 (519)
+||-+.
T Consensus 244 ri~~v~ 249 (326)
T PF13449_consen 244 RIYRVD 249 (326)
T ss_pred EEEEEE
Confidence 555443
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.77 E-value=1.3e+02 Score=30.34 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEecCC---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC--c
Q 010037 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--I 472 (519)
Q Consensus 398 p~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~--~ 472 (519)
-++.++.+..+|.|.-.|..+++.+-..... ..+.+-.+.. +++ ++.++.++.+..+|.++++.+-...... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3457777788888888888888766443322 2333333333 454 7778888999999998888773322222 1
Q ss_pred eEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l 504 (519)
+.....-.++ .+..++.+|.+.-.|..+++.
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTL 175 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcE
Confidence 2222222243 344444678888888776654
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=59.34 E-value=2.2e+02 Score=29.36 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-----EEEEecC---CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-----CLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (519)
Q Consensus 388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~-----~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~ 459 (519)
...+..+.|.+++.++..+..|.+.. ....++ ....... ...++.+.|.+ ++..+++| ..|.|.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-C
Confidence 34578888888885555556676543 333332 2222222 23589999987 66666555 567666553 3
Q ss_pred CCcEEee----ccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037 460 RCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (519)
Q Consensus 460 ~~~~~~~----~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw 497 (519)
.++.-.. .......+.+.|.++++.+++ +.+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 3443222 233456889999888776655 457776554
No 477
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=57.73 E-value=24 Score=20.98 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.3
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (519)
Q Consensus 471 ~~V~~v~~spdg~~l~sgs~dg~v~iwd 498 (519)
..|.+++..+. ++++++..+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 35677777554 899999999999984
No 478
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=57.67 E-value=15 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=17.4
Q ss_pred CCccccccCCCCChHHHHHHHHHH
Q 010037 48 YSQSEIWTGYPQSVNERRSKFLKL 71 (519)
Q Consensus 48 ~~~~~~~~~~~~~~~~r~~~~~~~ 71 (519)
.+.|..+ ....+-+|||++||..
T Consensus 4 ~sqYK~~-~~~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 4 LSQYKNK-GSALDQEERRREFLER 26 (40)
T ss_dssp CSCTT-T-TTSCSHHHHHHHHHHH
T ss_pred HHHhhcc-cchHhHHHHHHHHHHH
Confidence 4567777 5666899999999975
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.65 E-value=3.6e+02 Score=31.26 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=66.0
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEE--EEcCCCcEEeec
Q 010037 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRI--WEVRRCQVVDYT 467 (519)
Q Consensus 394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i--wd~~~~~~~~~~ 467 (519)
++..|.+ ++++| ....+++||+...++++... ....|+.+++. +..+++|...-.|.+ |+....+.+.+.
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 3556655 54444 45689999999988877664 36678888884 456777665555544 555556666544
Q ss_pred c--CCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037 468 D--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (519)
Q Consensus 468 ~--~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~ 500 (519)
+ ....|+++.+-.. ..+|.|..-|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDY-DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEecC-CceeeccccCcEEEEECC
Confidence 3 3345666655444 457777777887777664
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=57.26 E-value=3e+02 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=28.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
.+.|..+.|.++++.++..-.+|.|.+||..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 6789999999999999999999999999993
No 481
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=57.18 E-value=1.1e+02 Score=30.37 Aligned_cols=88 Identities=8% Similarity=0.097 Sum_probs=59.6
Q ss_pred EEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC-
Q 010037 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT- 491 (519)
Q Consensus 413 lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d- 491 (519)
++|+.+++.+..= -....+-.|+ ++++.++-+..|.|.-+|..+++........+....++|. |.++++|-..
T Consensus 189 vidv~s~evl~~G--LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 189 VIDIPSGEVVASG--LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred EEEeCCCCEEEcC--ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccc
Confidence 3566666554321 1111223455 6888888889999999999988777666666778889997 8888776542
Q ss_pred -------------------CeEEEEECCCCeeee
Q 010037 492 -------------------GNCRFYDIKGMQIFD 506 (519)
Q Consensus 492 -------------------g~v~iwdl~~~~l~~ 506 (519)
.-|.+.|+++|.++.
T Consensus 263 R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~ 296 (335)
T TIGR03032 263 RESRVFGGLPIEERLDALGCGVAVIDLNSGDVVH 296 (335)
T ss_pred cCCCCcCCCchhhhhhhhcccEEEEECCCCCEEE
Confidence 125677888887543
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.30 E-value=42 Score=34.58 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEE-EEEEccCCCEEEEEeCCCcEEEEecc
Q 010037 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLASGGEDGTVRVWKVI 314 (519)
Q Consensus 236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~-~l~fspdg~~LaSgs~Dg~I~iWd~~ 314 (519)
..+..+-+.|+|+.+..-+. .++.|+++.++..+.. ......-......|. .+..-..|.-|+.+..||.|.-|=-.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Q ss_pred cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (519)
.......++. ++.++-....+.-+
T Consensus 299 r~~~~p~l~h--------------------------------------------------------~R~f~l~pa~~~~l 322 (733)
T COG4590 299 RRDGQPHLNH--------------------------------------------------------IRNFKLAPAEVQFL 322 (733)
T ss_pred ecCCCCccee--------------------------------------------------------eeccccCcccceee
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (519)
Q Consensus 395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~ 463 (519)
.-..+. -+++-...|++.++.....+.+-.-..-..+.-++++| +++++++ -..|+|+++.+.+...
T Consensus 323 ~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp-~~~~Ll~-e~~gki~~~~l~Nr~P 390 (733)
T COG4590 323 LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP-NQAYLLS-EDQGKIRLAQLENRNP 390 (733)
T ss_pred ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc-ccchhee-ecCCceEEEEecCCCC
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=56.12 E-value=3.4e+02 Score=30.64 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.9
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe----c----------------CCCcEEEEEEeeCCCCEEEE
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----S----------------HNNYVTSVAFNPVDDNYFIS 446 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~----~----------------h~~~V~~v~fsp~d~~~l~s 446 (519)
.+.|.+++...-+ .++.+-.||+|.++|-.+-+.+... . .-..+..++|+| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 4567888877766 8899999999999997765444333 1 112344578999 8888888
Q ss_pred EeCCCeEE
Q 010037 447 GSIDGKVR 454 (519)
Q Consensus 447 gs~Dg~V~ 454 (519)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=55.27 E-value=2.1e+02 Score=28.41 Aligned_cols=101 Identities=12% Similarity=0.254 Sum_probs=63.9
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCc------EEEEECCC--C--eEEEEe-----c-CCC--------cEEEEEEeeCCCC
Q 010037 388 SSEVLDLSWSKNG-FLLSSSADKT------VRLWQVGI--D--RCLRVF-----S-HNN--------YVTSVAFNPVDDN 442 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~Dg~------V~lWdl~~--~--~~~~~~-----~-h~~--------~V~~v~fsp~d~~ 442 (519)
-+.+..|.+.+++ .+++.+.++. +..+++.. + ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 4567888998654 7788788887 66555543 1 111111 1 111 334788855 888
Q ss_pred EEEEEeCC------CeEEEEEcCCCcEEe-------e---------ccCCCceEEEEEeeCCCEEEEEec
Q 010037 443 YFISGSID------GKVRIWEVRRCQVVD-------Y---------TDIREIVSAVCYCPDGKGGIVGTM 490 (519)
Q Consensus 443 ~l~sgs~D------g~V~iwd~~~~~~~~-------~---------~~~~~~V~~v~~spdg~~l~sgs~ 490 (519)
++++.-.+ ..|+.++.. ++... + ...+...-+++++|||+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88887777 788888876 44331 1 123455889999999997666554
No 485
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=53.56 E-value=26 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEEecCCeEEEEECCCCeee
Q 010037 484 GGIVGTMTGNCRFYDIKGMQIF 505 (519)
Q Consensus 484 ~l~sgs~dg~v~iwdl~~~~l~ 505 (519)
.+++++.+|.+..+|..++++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEE
Confidence 5788889999999999888753
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=48.29 E-value=84 Score=24.55 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG 501 (519)
Q Consensus 451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~ 501 (519)
+.|..||..+.+.+ ...-...+.|.++|++++|.+++. .+.|++|....
T Consensus 36 ~~Vvyyd~~~~~~v--a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVV--ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEe--eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 44555665433222 222234578999999999887765 57899998753
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=48.26 E-value=2.8e+02 Score=27.31 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=42.5
Q ss_pred CcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCC----eEEEEEcCCCcEEeeccC---CCce---EEE
Q 010037 409 KTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDI---REIV---SAV 476 (519)
Q Consensus 409 g~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~~---~~~V---~~v 476 (519)
..+..||+.+.+....- .........+..- ++.+++.|+.++ .+.+||+.+.+-...... ..+. ...
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~ 217 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA 217 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecccee
Confidence 45888898887654432 2111122222223 677778887654 356888887653322211 1111 111
Q ss_pred -EEeeCCCEEEEEecC
Q 010037 477 -CYCPDGKGGIVGTMT 491 (519)
Q Consensus 477 -~~spdg~~l~sgs~d 491 (519)
+...++++++.|+.+
T Consensus 218 ~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 218 SIKINESLLLCIGGFN 233 (323)
T ss_pred EEEECCCEEEEECCcC
Confidence 122367788888865
No 488
>PHA02790 Kelch-like protein; Provisional
Probab=48.25 E-value=2e+02 Score=30.38 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=54.8
Q ss_pred CC-eEEEEeCC--CcEEEEECCCCeEEEEecCCCcE--EEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcEEeeccCC
Q 010037 399 NG-FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIR 470 (519)
Q Consensus 399 ~~-~L~sgs~D--g~V~lWdl~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~~ 470 (519)
++ ..+.|+.+ ..+..||..+++....-.-..+. .+++. .++.+.+.|+.++ .+..||..+.+=.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 34 55555543 45888888776654433211111 12222 2677888887654 4778888765433211111
Q ss_pred Cce-EEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037 471 EIV-SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507 (519)
Q Consensus 471 ~~V-~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~ 507 (519)
.+. ...+..-+|+..+.| |.+.+||..+++-..+
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLI 430 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEeEc
Confidence 111 112223466666666 3578899887655444
No 489
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=47.72 E-value=52 Score=19.37 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=12.9
Q ss_pred eEEEEEeeCCCEEEEEecCCeEEE
Q 010037 473 VSAVCYCPDGKGGIVGTMTGNCRF 496 (519)
Q Consensus 473 V~~v~~spdg~~l~sgs~dg~v~i 496 (519)
...++..++|+.+++=+....|++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 345666666655555444455544
No 490
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.63 E-value=1.5e+02 Score=28.39 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=48.2
Q ss_pred cCCCeeEEEEcC------CC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEee-C--CCCEEEEEeCCCeEEE
Q 010037 387 HSSEVLDLSWSK------NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP-V--DDNYFISGSIDGKVRI 455 (519)
Q Consensus 387 h~~~V~~l~~sp------~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp-~--d~~~l~sgs~Dg~V~i 455 (519)
+...|+||+--+ +. .|+.|+++|.|.|.|-.....+....-.+....|.-.- . -+..++.++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 456788887543 23 89999999999999999888888877544433433322 0 2345667788998876
Q ss_pred E
Q 010037 456 W 456 (519)
Q Consensus 456 w 456 (519)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=45.27 E-value=91 Score=24.55 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=32.8
Q ss_pred EeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEE
Q 010037 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFY 497 (519)
Q Consensus 447 gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iw 497 (519)
+..+|.|.-||..+++...+...-...+.|+++||+..|+++- ....|.=|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 3446889999999988755444444678999999999777653 33444433
No 492
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=45.23 E-value=1.9e+02 Score=32.41 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=50.2
Q ss_pred ccceeEeeccCCCeeEEEEc----CCC---eEEEEeCCCcEE-EEECCC--------CeEEEEecCCCcEEEEEEeeCCC
Q 010037 378 EKPLHEFQGHSSEVLDLSWS----KNG---FLLSSSADKTVR-LWQVGI--------DRCLRVFSHNNYVTSVAFNPVDD 441 (519)
Q Consensus 378 ~~~~~~~~~h~~~V~~l~~s----p~~---~L~sgs~Dg~V~-lWdl~~--------~~~~~~~~h~~~V~~v~fsp~d~ 441 (519)
+.|+....+ ....+.|+.. .++ .|+.|+.+|+|. +-.+.. -+.++.|.+..+|..+..++ ..
T Consensus 398 ~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~-~~ 475 (737)
T KOG3611|consen 398 GRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS-KR 475 (737)
T ss_pred CCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc-cC
Confidence 345554444 5556666655 334 778899998853 333333 12334556778999999999 77
Q ss_pred CEEEEEeCCCeEEE
Q 010037 442 NYFISGSIDGKVRI 455 (519)
Q Consensus 442 ~~l~sgs~Dg~V~i 455 (519)
..|++|+..|.++|
T Consensus 476 ~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 476 GSLYVGSRSGVVQV 489 (737)
T ss_pred CeEEEEccCcEEEe
Confidence 78889998887665
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=44.01 E-value=81 Score=19.85 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=18.4
Q ss_pred cCCCeeEEEEcCCC--eEEEEeCC--CcEEEE
Q 010037 387 HSSEVLDLSWSKNG--FLLSSSAD--KTVRLW 414 (519)
Q Consensus 387 h~~~V~~l~~sp~~--~L~sgs~D--g~V~lW 414 (519)
....-....|+|+| .+.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567788999999 44555566 666666
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.48 E-value=3.4e+02 Score=32.13 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=29.6
Q ss_pred ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC
Q 010037 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI 418 (519)
Q Consensus 386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~ 418 (519)
.+..+|..|+..... .|++-+..++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 577899999998877 899999999999999976
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=42.59 E-value=3.9e+02 Score=27.33 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred eEEEEeCCCcEEEEECC---CC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-----CcEEeec-
Q 010037 401 FLLSSSADKTVRLWQVG---ID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVVDYT- 467 (519)
Q Consensus 401 ~L~sgs~Dg~V~lWdl~---~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~- 467 (519)
+.+....+|.+..|.+. .+ +.++.|.-...+-.+.... ...+|..|-.+.-|.-|+..- ++.+...
T Consensus 173 ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~ 251 (381)
T PF02333_consen 173 YAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD 251 (381)
T ss_dssp EEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS
T ss_pred EEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeeccc
Confidence 66777788888777663 22 5678888777899999987 677899999998888887752 2333222
Q ss_pred --cCCCceEEEEEee--CCC-EEEEEe-cCCeEEEEECCC
Q 010037 468 --DIREIVSAVCYCP--DGK-GGIVGT-MTGNCRFYDIKG 501 (519)
Q Consensus 468 --~~~~~V~~v~~sp--dg~-~l~sgs-~dg~v~iwdl~~ 501 (519)
.....|-.|++-. +|+ ||++++ .+++..||+...
T Consensus 252 g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 252 GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 2345677777754 443 444444 467899999875
No 496
>PLN02193 nitrile-specifier protein
Probab=40.59 E-value=4.6e+02 Score=27.60 Aligned_cols=95 Identities=8% Similarity=0.025 Sum_probs=51.9
Q ss_pred cEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeCC----CeEEEEEcCCCcEEeeccC----CCceEE
Q 010037 410 TVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQVVDYTDI----REIVSA 475 (519)
Q Consensus 410 ~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~D----g~V~iwd~~~~~~~~~~~~----~~~V~~ 475 (519)
.+..||+.+.+....-. ..... +++. - ++.+++.|+.+ ..|.+||+.+.+-...... ......
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-V-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-E-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 46778887776543221 11111 2222 2 56677777655 4589999987654332211 111112
Q ss_pred EEEeeCCCEEEEEecC--------------CeEEEEECCCCeeeec
Q 010037 476 VCYCPDGKGGIVGTMT--------------GNCRFYDIKGMQIFDL 507 (519)
Q Consensus 476 v~~spdg~~l~sgs~d--------------g~v~iwdl~~~~l~~~ 507 (519)
.+..-++++++.|+.. ..+.+||+.+.+-..+
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 2223467777787753 2488999988765444
No 497
>PLN02193 nitrile-specifier protein
Probab=40.26 E-value=4.7e+02 Score=27.56 Aligned_cols=104 Identities=12% Similarity=0.161 Sum_probs=57.0
Q ss_pred eEEEEeCC-----CcEEEEECCCCeEEEEecC-----CCcEEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCcEEe
Q 010037 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD 465 (519)
Q Consensus 401 ~L~sgs~D-----g~V~lWdl~~~~~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~iwd~~~~~~~~ 465 (519)
+++.|+.+ ..+..||+.+.+....-.. ...-.+++.. ++.+++.|+.++ .+..||+.+.+-..
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 44455443 3588899988766543221 1111222222 566777777543 46778887754332
Q ss_pred ecc------CCCceEEEEEeeCCCEEEEEecC----CeEEEEECCCCeeeecc
Q 010037 466 YTD------IREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKGMQIFDLS 508 (519)
Q Consensus 466 ~~~------~~~~V~~v~~spdg~~l~sgs~d----g~v~iwdl~~~~l~~~~ 508 (519)
... .......+ .-+++.++.++.+ ..+.+||+.+++-.++.
T Consensus 309 ~~~~~~~~~~R~~~~~~--~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLE--VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred CCCCCCCCCCCCCcEEE--EECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence 211 11111122 2367788887765 45899999987655543
No 498
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.98 E-value=50 Score=21.00 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=17.6
Q ss_pred EEEEEecCCeEEEEECCCCee
Q 010037 484 GGIVGTMTGNCRFYDIKGMQI 504 (519)
Q Consensus 484 ~l~sgs~dg~v~iwdl~~~~l 504 (519)
.+.+++.+|.+.-+|.++|++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSE
T ss_pred EEEEeCCCCEEEEEECCCCCE
Confidence 356679999999999999875
No 499
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=39.85 E-value=2e+02 Score=27.59 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=45.2
Q ss_pred CCCcEEEEEEee------CCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEE----EEeeCCCEEEEEecCCeEEE
Q 010037 427 HNNYVTSVAFNP------VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV----CYCPDGKGGIVGTMTGNCRF 496 (519)
Q Consensus 427 h~~~V~~v~fsp------~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v----~~spdg~~l~sgs~dg~v~i 496 (519)
....|+|++--. ..-..|+.|..+|.|.|.|.....++...........+ .|..-...|++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 455677766532 12358999999999999999988777543333332222 22212235788888998875
Q ss_pred E
Q 010037 497 Y 497 (519)
Q Consensus 497 w 497 (519)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 3
No 500
>PLN02153 epithiospecifier protein
Probab=38.56 E-value=4.1e+02 Score=26.40 Aligned_cols=192 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCeEEeeecCC-------eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEec
Q 010037 246 GDHELTLGQRMR-------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRVWKV 313 (519)
Q Consensus 246 ~g~~lasgs~dg-------~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-----g~I~iWd~ 313 (519)
++.+.+.|+.+. .+.++|.............. .............-++++++.||.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD---VPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC---CCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEEC
Q ss_pred ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec------c
Q 010037 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------H 387 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h 387 (519)
.+.+ -..+.. .
T Consensus 109 ~t~~---------------------------------------------------------------W~~~~~~~~~~~p 125 (341)
T PLN02153 109 VKNE---------------------------------------------------------------WTFLTKLDEEGGP 125 (341)
T ss_pred CCCE---------------------------------------------------------------EEEeccCCCCCCC
Q ss_pred CCCeeEEEEcCCC-eEEEEeCC-----------CcEEEEECCCCeEEEEecCC---CcEEEEEEeeCCCCEEEEEeCC--
Q 010037 388 SSEVLDLSWSKNG-FLLSSSAD-----------KTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSID-- 450 (519)
Q Consensus 388 ~~~V~~l~~sp~~-~L~sgs~D-----------g~V~lWdl~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~D-- 450 (519)
.......+..-++ .++.|+.+ ..|.+||..+.+....-... ..-........++.+++.|+.+
T Consensus 126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 205 (341)
T PLN02153 126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATS 205 (341)
T ss_pred CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccc
Q ss_pred -----------CeEEEEEcCCCcEEeecc----CCCceEEEEEeeCCCEEEEEecC--------------CeEEEEECCC
Q 010037 451 -----------GKVRIWEVRRCQVVDYTD----IREIVSAVCYCPDGKGGIVGTMT--------------GNCRFYDIKG 501 (519)
Q Consensus 451 -----------g~V~iwd~~~~~~~~~~~----~~~~V~~v~~spdg~~l~sgs~d--------------g~v~iwdl~~ 501 (519)
..|.+||+.+.+=..... ........+...++++++.|+.. ..+..||+.+
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Q ss_pred Ce
Q 010037 502 MQ 503 (519)
Q Consensus 502 ~~ 503 (519)
.+
T Consensus 286 ~~ 287 (341)
T PLN02153 286 LV 287 (341)
T ss_pred cE
Done!