Citrus Sinensis ID: 010038


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MSSGNNSMHGLNNHRFQAKNSDFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEcccccEEEccccccccccccccccccEEEEEEEEcccccccccEEEEEccccccccccccHHHHHHHHEEEEEEEEEEEEEcccccHHcccEEEEEEEEEEEEEcccccEEEEEcccccEEEccccccccEEEEEccccEEEEEEcccccEEEEHHHHHHHHHHHHcccccccc
cccccccccccccccccccccccHccHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccEcEEEEEEEcccccEEEEcccccccEEEEcccccEEEEEEEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHcccEEEEccccEEEEEEccccEEEEEccccccEEEEEEccccEEccccccccHHHHHHHHHHHHHHHHHHHHHcccc
mssgnnsmhglnnhrfqaknsdfvnsrhkiethlaptkqkednfisfQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGlladyglwphvtnasaiSNTVKHLYDQLQSQIRTSYDRIRDLtreggtdagagsidtdrhgvpmhtpnaadrpeptdnmprtihddshSEMKNLLHNSQMQQlfnndssqgfsfgsnrenlgnvpnaLDLRvargpeemnawfpsthNEIAssiseggpgiegfqiigeatpgekllgcgypvrgttLCMFQWVRHLQDgtrhyiegatnpeyvvtaddvDKLIAVecipmddqgrqGELVRRFANDqnkikcdlgmQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIieerfpkevsikvpcglstQFVLtfsdgssypfstynvrMRDTLVLTMRMLQGKalddkrkgra
mssgnnsmhglNNHRFQAKNSDFVNSRHKIEthlaptkqkednfisFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTReggtdagagsidtdrhgvpmhtpnaadrpeptdnMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSteaiieerfpkevsikvpCGLSTQFVLTFsdgssypfstynVRMRDTLVLTMRmlqgkalddkrkgra
MSSGNNSMHGLNNHRFQAKNSDFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNeiassiseggpgiegFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
*****************************************************************IHSLRQQIAVACLKELQLQNEKYTLERKVSELRM*********ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRI******************************************************************************************************WF***************PGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRML*************
**************************************************EAMELY************LRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN***********RRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQI***********************************************************************************************L********************************IEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK**********
********HGLNNHRFQAKNSDFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK**********
*********************DFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT***G*********************************************************************************************AWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKR****
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MSSGNNSMHGLNNHRFQAKNSDFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLxxxxxxxxxxxxxxxxxxxxxGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
297833026519 hypothetical protein ARALYDRAFT_477601 [ 0.936 0.936 0.584 1e-162
145338065521 uncharacterized protein [Arabidopsis tha 0.938 0.934 0.577 1e-160
255566034510 hypothetical protein RCOM_1516730 [Ricin 0.868 0.884 0.592 1e-155
449432366536 PREDICTED: uncharacterized protein LOC10 0.978 0.947 0.526 1e-147
449487556484 PREDICTED: uncharacterized protein LOC10 0.880 0.944 0.550 1e-142
6017097436 hypothetical protein [Arabidopsis thalia 0.712 0.848 0.518 1e-108
242093892525 hypothetical protein SORBIDRAFT_10g02704 0.913 0.902 0.421 1e-103
357123430540 PREDICTED: uncharacterized protein LOC10 0.876 0.842 0.454 1e-102
356503123607 PREDICTED: uncharacterized protein LOC10 0.437 0.373 0.771 1e-102
359489142426 PREDICTED: uncharacterized protein LOC10 0.743 0.906 0.519 1e-102
>gi|297833026|ref|XP_002884395.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] gi|297330235|gb|EFH60654.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/515 (58%), Positives = 372/515 (72%), Gaps = 29/515 (5%)

Query: 27  RHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQN 85
           RH+IE     +++ ED N    QD E M LY++ R Q+EEIHSL+++IA ACLK++QL N
Sbjct: 12  RHEIEKDTIASRKLEDSNAKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACLKDMQLLN 71

Query: 86  EKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMS 145
           EKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEEN KLAHDLKV EDERY FM+
Sbjct: 72  EKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENSKLAHDLKVTEDERYIFMT 131

Query: 146 SMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSID 205
           S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + +   DRIR+L+       G   I 
Sbjct: 132 SLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQPGTDFIS 191

Query: 206 TDRHGVPMHTPNAA-----DRPE----------PTDNMPRTIHDDSHSEMKNLLHNSQMQ 250
            D H  P ++ + A     DR            P +N+ R  + +   + + L  N+Q+ 
Sbjct: 192 KDNHD-PRNSKSQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNVMQDTEGLRFNNQI- 249

Query: 251 QLFNNDSSQGFSFGSNRENLG----NVPNALDLRVARGPEEMNAWFPSTHN--EIASSIS 304
                  SQG      REN G    +V     +R      E ++ F + +   E AS + 
Sbjct: 250 ----GGGSQGIFQQPKRENFGYPLSSVAGKEMIREREEKAESSSMFDAYNGNEEFASHVY 305

Query: 305 EGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVV 364
           E GPGI+GFQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+PEYVV
Sbjct: 306 EEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEYVV 365

Query: 365 TADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVL 424
           TADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD  MQ+EID YISRG A+F+V 
Sbjct: 366 TADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQAEIDTYISRGQASFNVQ 425

Query: 425 MLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGS 484
           +LMDSSE+WE AT+IL+RS Y+IK ++TE +I E++ KE+ IKVPCG STQFVL   DGS
Sbjct: 426 LLMDSSESWETATVILKRSSYQIKTNTTE-VISEKYSKELQIKVPCGFSTQFVLISYDGS 484

Query: 485 SYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA 519
           S+P ST NVRMRDTLVLTMRMLQ KALD++RKGR 
Sbjct: 485 SHPISTLNVRMRDTLVLTMRMLQSKALDERRKGRV 519




Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338065|ref|NP_187006.2| uncharacterized protein [Arabidopsis thaliana] gi|332640436|gb|AEE73957.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255566034|ref|XP_002524005.1| hypothetical protein RCOM_1516730 [Ricinus communis] gi|223536732|gb|EEF38373.1| hypothetical protein RCOM_1516730 [Ricinus communis] Back     alignment and taxonomy information
>gi|449432366|ref|XP_004133970.1| PREDICTED: uncharacterized protein LOC101207305 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487556|ref|XP_004157685.1| PREDICTED: uncharacterized protein LOC101226515 [Cucumis sativus] Back     alignment and taxonomy information
>gi|6017097|gb|AAF01580.1|AC009895_1 hypothetical protein [Arabidopsis thaliana] gi|6091766|gb|AAF03476.1|AC009327_15 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242093892|ref|XP_002437436.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] gi|241915659|gb|EER88803.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357123430|ref|XP_003563413.1| PREDICTED: uncharacterized protein LOC100840800 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356503123|ref|XP_003520361.1| PREDICTED: uncharacterized protein LOC100813936 [Glycine max] Back     alignment and taxonomy information
>gi|359489142|ref|XP_002264857.2| PREDICTED: uncharacterized protein LOC100262416 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
TAIR|locus:2096434521 AT3G03560 [Arabidopsis thalian 0.957 0.953 0.554 8e-140
TAIR|locus:2154468729 AT5G23490 "AT5G23490" [Arabido 0.391 0.278 0.428 5.2e-64
TAIR|locus:2096434 AT3G03560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 288/519 (55%), Positives = 370/519 (71%)

Query:    19 KNSDFVNSRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVAC 77
             ++S+ +  RH+IE     +++ ED N    QD E M LY++ R Q+EEIHSL+++IA AC
Sbjct:     5 RSSESIK-RHEIEKDTIASRKLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAAC 63

Query:    78 LKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAE 137
             LK++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEENLKLAHDLKV E
Sbjct:    64 LKDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTE 123

Query:   138 DERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGT 197
             DERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + +   DRIR+L+     
Sbjct:   124 DERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVEN 183

Query:   198 DAGAGSIDTDRHGVPMHTPNAA-----DRP---EPTDNMPRTIHDDSHSEMKNLLHNSQM 249
               G   I  D H  P ++   A     DR    +  + +   + + + +   N++ +++ 
Sbjct:   184 QPGTDFISKDNHD-PRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTES 242

Query:   250 QQLFNND---SSQGFSFGSNRENLGNVPNAL---DLRVARGPEEMNAWFPSTHNXXXXXX 303
              + FNN     SQG      REN G   +++   ++   R  +  N+     +N      
Sbjct:   243 LR-FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQEREEKAENSSMFDAYNGNEEFA 301

Query:   304 XXXXXXX---XXFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNP 360
                         FQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+P
Sbjct:   302 SHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHP 361

Query:   361 EYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHAT 420
             EY+VTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD  MQ+EID YISRG A+
Sbjct:   362 EYIVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQAS 421

Query:   421 FSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAI-IEERFPKEVSIKVPCGLSTQFVLT 479
             F+V +LMDSSE+WE AT++L+RS Y+IK ++TEA+ I E++ KE+ I+VP G STQFVL 
Sbjct:   422 FNVQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLI 481

Query:   480 FSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGR 518
               DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR
Sbjct:   482 SYDGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGR 520




GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2154468 AT5G23490 "AT5G23490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh2_kg.3__302__AT3G03560.1
annotation not avaliable (519 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 519
PF14988206 DUF4515: Domain of unknown function (DUF4515) 81.28
PRK11637428 AmiB activator; Provisional 80.22
>PF14988 DUF4515: Domain of unknown function (DUF4515) Back     alignment and domain information
Probab=81.28  E-value=7.4  Score=38.20  Aligned_cols=81  Identities=26%  Similarity=0.336  Sum_probs=55.8

Q ss_pred             HHHhh-ccHHHHHHHHHHHHHHh----h----hhhhhhcchhhhHHHHhHHHHhH---------hHHhhHHHHHHHHHHH
Q 010038           56 YSRAR-MQKEEIHSLRQQIAVAC----L----KELQLQNEKYTLERKVSELRMAI---------DEKQNEAITSALNELA  117 (519)
Q Consensus        56 ~~k~r-~~eeEi~~Lr~~la~~s----~----kE~qll~EK~~LErria~lR~Af---------d~qQQdlVdAASKaLS  117 (519)
                      |.+++ .||.||..|++.+...-    .    =+.|.+.||.-||+-+.+++++-         .++=|-|.-||-++|.
T Consensus        76 ~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~  155 (206)
T PF14988_consen   76 FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLD  155 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            44444 78999999998887522    1    25789999999999987777652         2233334444555543


Q ss_pred             -HhhhhHhhhhhhhhhhhhh
Q 010038          118 -RRKGVLEENLKLAHDLKVA  136 (519)
Q Consensus       118 -yRQdiiEENiRLtyalq~a  136 (519)
                       +=++|-.||.+|.-+|.--
T Consensus       156 e~~~~i~~EN~~L~k~L~~l  175 (206)
T PF14988_consen  156 EFTRSIKRENQQLRKELLQL  175 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence             5688999999998776543



>PRK11637 AmiB activator; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
4dix_A230 Plectin-related protein; PH domain, IG domain, mal 4e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230 Back     alignment and structure
 Score =  144 bits (363), Expect = 4e-40
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 301 SSISEGGPGIEGFQIIGEATPGEKL--LGCGYPVRGTTLCMFQWVR-HLQDGTRHYIEGA 357
           SS          ++I G    G  L    C       + C  QW R       +  I GA
Sbjct: 3   SSSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGA 62

Query: 358 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 417
           T   Y     DV +++  + I        G  +        KI    G+ S ++A + + 
Sbjct: 63  TKSVYAPEPFDVGRVLHADIIY------DGHSLSLSTVG--KIDPAAGLGSYVEALVRKH 114

Query: 418 HATFSVLML-MDSSENWEQATLILRRSIYRIKIDSTEA-IIEERFPKEVSIKVPCGL--- 472
              F+V++  M   ++  ++  +      RIK+   +  I +E +   + +   CG+   
Sbjct: 115 DVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQL---CGVRGG 171

Query: 473 ---STQFVL-TFSDGSSYPFSTYNVRMRDTLVLTMR 504
              + Q +      G S+  +  + R R+  ++  R
Sbjct: 172 GNAAAQALYWQAKKGVSFVIAFESERERNAAIMLAR 207


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
4dix_A230 Plectin-related protein; PH domain, IG domain, mal 99.93
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=99.93  E-value=3.2e-25  Score=211.61  Aligned_cols=187  Identities=20%  Similarity=0.322  Sum_probs=158.9

Q ss_pred             ceeecccCCCcceee--cccccCCcccceeeEEEEc-ccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccce
Q 010038          313 FQIIGEATPGEKLLG--CGYPVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL  389 (519)
Q Consensus       313 lqI~Gda~pG~~L~a--cG~~ingTtlC~FqWVRhl-eDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGEl  389 (519)
                      +.+-|.-..|.-|+-  |--..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+|      .|+.
T Consensus        15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k   88 (230)
T 4dix_A           15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS   88 (230)
T ss_dssp             EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred             eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence            345566677776653  3333334799999999999 889999999999999999999999999999998      3899


Q ss_pred             eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceEEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 010038          390 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK  467 (519)
Q Consensus       390 Vk~~ANd~~kI~cDpeMq~~I~~~l~~G~Asf~V~ll~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~EKfs~~~~Ik  467 (519)
                      +.+|+|  +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus        89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC  166 (230)
T 4dix_A           89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC  166 (230)
T ss_dssp             EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred             EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence            999999  9999999999999999999999999999955567888 99999999999999985 4499999999987664


Q ss_pred             ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 010038          468 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ  507 (519)
Q Consensus       468 Ip~G--~--~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~  507 (519)
                      =..|  +  +.-.+-.-.-|..+.|-++..|.|..+++.-|-|-
T Consensus       167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA  210 (230)
T 4dix_A          167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA  210 (230)
T ss_dssp             ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence            4443  2  33455566789999999999999999999999984




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00