Query 010040
Match_columns 519
No_of_seqs 329 out of 1918
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 3.7E-19 1.3E-23 142.2 6.3 60 251-310 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 7E-19 2.4E-23 140.6 6.0 58 159-217 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 94.2 0.026 8.9E-07 46.8 3.0 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 80.2 0.12 4E-06 47.5 -3.1 88 197-292 55-146 (174)
5 3eik_A Tata-box-binding protei 75.5 13 0.00044 36.1 9.4 134 158-298 75-212 (218)
6 1u3e_M HNH homing endonuclease 73.0 0.15 5.1E-06 46.8 -4.5 38 160-199 109-146 (174)
7 2z8u_A Tata-box-binding protei 68.7 28 0.00097 32.8 9.9 133 158-298 45-182 (188)
8 1ais_A TBP, protein (tata-bind 64.8 31 0.0011 32.2 9.3 133 158-298 41-178 (182)
9 1mp9_A Tata-binding protein; t 63.7 42 0.0014 31.9 10.1 133 158-298 45-182 (198)
10 3igm_B PF14_0633 protein; AP2 58.0 4.9 0.00017 33.3 2.2 20 248-267 4-24 (77)
11 1z1b_A Integrase; protein-DNA 40.3 32 0.0011 32.8 5.2 41 162-205 15-55 (356)
12 1x60_A Sporulation-specific N- 37.3 50 0.0017 25.7 5.0 22 182-203 11-32 (79)
13 1z1b_A Integrase; protein-DNA 30.4 61 0.0021 30.9 5.3 42 253-298 14-55 (356)
14 1ytb_A Protein (tata binding p 27.5 1.7E+02 0.0057 27.3 7.6 133 158-297 37-173 (180)
15 1rm1_A Tata-box binding protei 24.4 1.6E+02 0.0056 28.8 7.2 133 158-297 97-233 (240)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.76 E-value=3.7e-19 Score=142.17 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.8
Q ss_pred cccCeeeecCcceEEeecccc-CceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCc
Q 010040 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (519)
Q Consensus 251 kYRGV~~~k~GKW~ArI~~~~-~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s 310 (519)
+|+||+++++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999998999999997655 468999999999999999999999999999999999875
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.75 E-value=7e-19 Score=140.57 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=53.9
Q ss_pred CeEEEEEecCCCeEEEEEEeC---CeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCcccccc
Q 010040 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (519)
Q Consensus 159 gYRGV~~~k~~GKW~A~I~~~---gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~s 217 (519)
+||||++ +++|||+|+|+++ ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999997 4689999999994 78999999999999999999999999999999999953
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.21 E-value=0.026 Score=46.77 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEecCCCeEEEEEEeCCeEE
Q 010040 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (519)
Q Consensus 155 ~~tSgYRGV~~~k~~GKW~A~I~~~gKri 183 (519)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999998753
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.23 E-value=0.12 Score=47.48 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcccC---Cccccc-cccchhhhhhccccccceeeeecccccCcCCCCCcccCeeeecCcceEEeeccccC
Q 010040 197 AYDRAAIKFRGAEA---DINFSI-EDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (519)
Q Consensus 197 AYD~AAikl~G~~A---~~NFp~-sdYeeELkqL~~LSKEE~V~aLRRqs~g~~r~sSkYRGV~~~k~GKW~ArI~~~~~ 272 (519)
++...+..|.|... ..++-- ......+..|+-+|..|......+... . ..++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEE--EEc
Confidence 45555666666432 122221 123345677777888777654433321 1 124577653356788888 344
Q ss_pred ceeeeccCCCCHHHHHHHHH
Q 010040 273 KKYVYLGLFDTEVEAARAYD 292 (519)
Q Consensus 273 ~K~v~LGtFdTeEEAArAYD 292 (519)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 5678999999999999963
No 5
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=75.46 E-value=13 Score=36.12 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=81.7
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCccc---cccccchhhhhhccccccce
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF---SIEDYEDDLKQMSNLTKEEF 234 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NF---p~sdYeeELkqL~~LSKEE~ 234 (519)
.+|-||.++-+.-+=.+-|+..||-+..|. .++++|..|.++.+..+....-...| ....-......-..+..+++
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 367788877778888999999999888886 56889999998888777542222222 11100000000001111111
Q ss_pred eeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (519)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl 298 (519)
......... =....|-|+.++- ..|-..-| +..||-+..|. .+++|+..|++.-.-.+
T Consensus 154 a~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 111111111 1234678888773 45667777 78899888887 78999999998765444
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=73.03 E-value=0.15 Score=46.77 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.8
Q ss_pred eEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHH
Q 010040 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (519)
Q Consensus 160 YRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD 199 (519)
++||.+ +..++|.+.|... +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 467876 6677799999988 7788999999999999864
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=68.68 E-value=28 Score=32.76 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcc--c-C-Cccccccccchhhhhhccccccc
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--E-A-DINFSIEDYEDDLKQMSNLTKEE 233 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~--~-A-~~NFp~sdYeeELkqL~~LSKEE 233 (519)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++|+|..|..+.+..+... . . ..+|.+..--....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 4788888777777889999999998877764 5667777777766555332 1 1 12332111000000000011111
Q ss_pred eeeeecccccCcCCCCCcccCeeee-cCcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040 234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (519)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~-k~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl 298 (519)
+...+ +... =...+|-|+.++ ..-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 124 la~~~-~~~e---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMV-EGTE---YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHS-TTEE---ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhC-cCcE---ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 1111 123478898877 355677777 78899888886 56778999988866554
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=64.80 E-value=31 Score=32.24 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcc--c-C-Cccccccccchhhhhhccccccc
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--E-A-DINFSIEDYEDDLKQMSNLTKEE 233 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~--~-A-~~NFp~sdYeeELkqL~~LSKEE 233 (519)
.+|-||.++-+.-+=.+.|+..||-+--|. .++|+|..|..+.+..+... . . ..+|.+..--....--..+..++
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 119 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDV 119 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHH
T ss_pred CccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHH
Confidence 467788766666677899999998776664 67788888888876665432 1 1 12332111000000000011111
Q ss_pred eeeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (519)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl 298 (519)
+...+ +... =...+|-|+.++- ..|-.+-| +..||-+..|. .+++|+..|+++-...+
T Consensus 120 la~~~-~~~~---YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 120 VALTL-PNCE---YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHHS-TTEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhC-CCCE---ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 1111 1234788988773 55677777 78899888886 56788999998876655
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=63.70 E-value=42 Score=31.86 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcc--c-C-Cccccccccchhhhhhccccccc
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--E-A-DINFSIEDYEDDLKQMSNLTKEE 233 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~--~-A-~~NFp~sdYeeELkqL~~LSKEE 233 (519)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|.++.+..+... . . ..+|....--....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 3577888777777889999999998888875 5577888877766555431 1 1 12222111000000000011111
Q ss_pred eeeeecccccCcCCCCCcccCeeee-cCcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040 234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (519)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~-k~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl 298 (519)
+...+ +... =....|-|+.++ ..-|-.+-| +..||-+..|. .+++++..|+++-...+
T Consensus 124 la~~~-~~~~---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 124 AAFLL-ENNM---YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKL 182 (198)
T ss_dssp HHHHS-SSEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhc-CCcE---ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 1111 123478898887 355777777 78899888886 46778999988876665
No 10
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=57.98 E-value=4.9 Score=33.32 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.3
Q ss_pred CCCcccCeeeec-CcceEEee
Q 010040 248 GSSKYRGVTLHK-CGRWEARM 267 (519)
Q Consensus 248 ~sSkYRGV~~~k-~GKW~ArI 267 (519)
.+|+|.||++.+ .+.|.|.-
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W 24 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFF 24 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEE
T ss_pred CCCCCCcEEeecCCceEEEEE
Confidence 468999999997 68899986
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=40.29 E-value=32 Score=32.82 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred EEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHh
Q 010040 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (519)
Q Consensus 162 GV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl 205 (519)
||+ .++.|.|.......||++.+|. |..||-.+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988777899999996 8888877766655444
No 12
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.32 E-value=50 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHH
Q 010040 182 QVYLGGFDTAHAAARAYDRAAI 203 (519)
Q Consensus 182 ri~LGtFdTeEEAArAYD~AAi 203 (519)
.|.+|.|.+.+.|.+...+...
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~ 32 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEA 32 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHh
Confidence 5778999999999888766543
No 13
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=30.38 E-value=61 Score=30.86 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=30.4
Q ss_pred cCeeeecCcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (519)
Q Consensus 253 RGV~~~k~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl 298 (519)
.||...+.|.|..+. ...||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467766788998886 35677889996 8888877766554444
No 14
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=27.49 E-value=1.7e+02 Score=27.31 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcccC---Cccccccccchhhhhhccccccce
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEA---DINFSIEDYEDDLKQMSNLTKEEF 234 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A---~~NFp~sdYeeELkqL~~LSKEE~ 234 (519)
..|-||.++-+.-|=.+-|+..||-+--|. .++|+|..|.++.+..+....- ..||.....-.....-..+..+.+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~l 115 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 115 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHH
Confidence 467788877777788999999999887776 4667888887776555533211 123321110000000000111111
Q ss_pred eeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 010040 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (519)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAik 297 (519)
........ .=....|-|+.++- ..|-..-| +..||-+..|. .+++|+..|++.-.-.
T Consensus 116 a~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 116 AFSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 11111110 11234678888763 33445555 77888888776 4677888888775443
No 15
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=24.44 E-value=1.6e+02 Score=28.75 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcccCC---ccccccccchhhhhhccccccce
Q 010040 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD---INFSIEDYEDDLKQMSNLTKEEF 234 (519)
Q Consensus 158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~---~NFp~sdYeeELkqL~~LSKEE~ 234 (519)
..|-||.++-+.-+=.+-|+..||-+--|. .++|+|..|.++.+..+....-. .||.....-.....-..+..+.+
T Consensus 97 e~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~l 175 (240)
T 1rm1_A 97 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 175 (240)
T ss_dssp TTCSEEEEEEETTEEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccceEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHH
Confidence 468889877677788999999999888886 46677888877765555332111 23322110000000001111111
Q ss_pred eeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 010040 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (519)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAik 297 (519)
......... =....|-|+.++- .-|-..-| +..||-+..|. .+++|+..|++.-.-.
T Consensus 176 a~~~~~~~~---YEPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 176 AFSHGTFSS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 233 (240)
T ss_dssp HHHTTTTEE---EETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhchhccE---ECCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 111111100 0124677887763 44555666 78888888776 4677888888775443
Done!