BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010041
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 193/420 (45%), Gaps = 44/420 (10%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
GWV D G + + + + I G++ + S NL++LD+ SNN S IP D S
Sbjct: 170 GWV--LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDC-S 223
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
L ++ + N L+G + I + L++L++ SN G IP +++L+ LSL NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 186 SGTIPIEIE-SLRNLQWLDLSSNKLSGTIPKEIG-------------------------S 219
+G IP + + L LDLS N G +P G
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLK-SLTALSMDANNLGGPIPSTLFR--LTNIEYLSL 276
+R LK LDLS N+ G LP+ + NL SL L + +NN GPI L + ++ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 277 GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
N F G IP + N L SL L N L+G IPS+LG L+ L+ L L N L IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 337 IGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDL 396
+ L L L N + G IP L+ G+IP IG+L NLA L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 397 SKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVVALEILMGRH 456
S N SG+IP E+G+C L L LN N NG + M G +A + G+
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------GKIAANFIAGKR 574
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 161/330 (48%), Gaps = 23/330 (6%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
LQ L L +N +G IP + + S L ++L N L+GTIP +GSL L L L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222
G IP E+ V+ LETL LD N L+G IP + + NL W+ LS+N+L+G IPK IG L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 223 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR---------LTNIEY 273
L L LS+N G +P E+ + +SL L ++ N G IP+ +F+ + Y
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 274 LSL---GFNR----------FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
+ + G + F G ++ L ++ GH T S+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQ 380
LD+S N L IP IG+ L L+L N I G IPDE+ G+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 381 IPFAIGKLFNLASLDLSKNKLSGSIPTEIG 410
IP A+ L L +DLS N LSG IP E+G
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIP-EMG 724
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 185/392 (47%), Gaps = 46/392 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYENNLTGT 140
L S+I G + F C +L LDL N+LSG + + + S S L ++ + N L
Sbjct: 84 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 141 IPKEIG---SLRNLEVLDLGSNNLNGTIPIEI---GSVRNLETLSLDGNKLSGTIPIEIE 194
P ++ L +LEVLDL +N+++G + L+ L++ GNK+SG + ++
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 195 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 254
NL++LD+SSN S IP +G L+ LD+S NKL G + I L L++ +
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 255 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTL 313
N GPIP L +++YLSL N+F G IP + LT L L GN G +P
Sbjct: 257 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 314 G-------------------------RLTSLQILDLSSNQLHSSIPLVIGNFSA-LSYLD 347
G ++ L++LDLS N+ +P + N SA L LD
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 348 LSDNRICGIIPDELTX--XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSI 405
LS N G I L G+IP + L SL LS N LSG+I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 406 PTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 437
P+ +G+ S+LR+L L N L G++ ++ +
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 81 IGLQKSNIKGEL----GRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN 136
I L + + GE+ GRL NL L L +N+ SG+IP+++ +L ++ L N
Sbjct: 495 ISLSNNRLTGEIPKWIGRLE-----NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 137 LTGTIPKEI------------------------------GSLRNLEVLDLGSNNLN---- 162
GTIP + G+ LE + S LN
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 163 ------------GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS 210
G + ++ L + N LSG IP EI S+ L L+L N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 211 GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262
G+IP E+G LR L LDLSSNKL G +PQ + L LT + + NNL GPIP
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 187/398 (46%), Gaps = 37/398 (9%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
GWV D G + + + + I G++ + S NL++LD+ SNN S IP D S
Sbjct: 167 GWV--LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDC-S 220
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
L ++ + N L+G + I + L++L++ SN G IP +++L+ LSL NK
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 278
Query: 186 SGTIPIEIE-SLRNLQWLDLSSNKLSGTIPKEIG-------------------------S 219
+G IP + + L LDLS N G +P G
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLK-SLTALSMDANNLGGPIPSTLFR--LTNIEYLSL 276
+R LK LDLS N+ G LP+ + NL SL L + +NN GPI L + ++ L L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 277 GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
N F G IP + N L SL L N L+G IPS+LG L+ L+ L L N L IP
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 337 IGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDL 396
+ L L L N + G IP L+ G+IP IG+L NLA L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 397 SKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMV 434
S N SG+IP E+G+C L L LN N NG + M
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 161/330 (48%), Gaps = 23/330 (6%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
LQ L L +N +G IP + + S L ++L N L+GTIP +GSL L L L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222
G IP E+ V+ LETL LD N L+G IP + + NL W+ LS+N+L+G IPK IG L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 223 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR---------LTNIEY 273
L L LS+N G +P E+ + +SL L ++ N G IP+ +F+ + Y
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 274 LSL---GFNR----------FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
+ + G + F G ++ L ++ GH T S+
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQ 380
LD+S N L IP IG+ L L+L N I G IPDE+ G+
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 381 IPFAIGKLFNLASLDLSKNKLSGSIPTEIG 410
IP A+ L L +DLS N LSG IP E+G
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIP-EMG 721
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 185/392 (47%), Gaps = 46/392 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYENNLTGT 140
L S+I G + F C +L LDL N+LSG + + + S S L ++ + N L
Sbjct: 81 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 141 IPKEIG---SLRNLEVLDLGSNNLNGTIPIEI---GSVRNLETLSLDGNKLSGTIPIEIE 194
P ++ L +LEVLDL +N+++G + L+ L++ GNK+SG + ++
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 195 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 254
NL++LD+SSN S IP +G L+ LD+S NKL G + I L L++ +
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 255 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTL 313
N GPIP L +++YLSL N+F G IP + LT L L GN G +P
Sbjct: 254 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 314 G-------------------------RLTSLQILDLSSNQLHSSIPLVIGNFSA-LSYLD 347
G ++ L++LDLS N+ +P + N SA L LD
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 348 LSDNRICGIIPDELTX--XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSI 405
LS N G I L G+IP + L SL LS N LSG+I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 406 PTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 437
P+ +G+ S+LR+L L N L G++ ++ +
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 81 IGLQKSNIKGEL----GRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN 136
I L + + GE+ GRL NL L L +N+ SG+IP+++ +L ++ L N
Sbjct: 492 ISLSNNRLTGEIPKWIGRLE-----NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 137 LTGTIPKEI------------------------------GSLRNLEVLDLGSNNLN---- 162
GTIP + G+ LE + S LN
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 163 ------------GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS 210
G + ++ L + N LSG IP EI S+ L L+L N +S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 211 GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262
G+IP E+G LR L LDLSSNKL G +PQ + L LT + + NNL GPIP
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 139/285 (48%), Gaps = 15/285 (5%)
Query: 61 TSDHCG--WVGITCDYEG---RITDIGLQKSNIKGELGRLNFSCFPNLQYLDL----GSN 111
T+D C W+G+ CD + R+ ++ L N+ S NL YL+ G N
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGIN 87
Query: 112 NLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS 171
NL G IP I L+ L Y+Y+ N++G IP + ++ L LD N L+GT+P I S
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 172 VRNLETLSLDGNKLSGTIPIEIESLRNL-QWLDLSSNKLSGTIPKEIGSLRNLKELDLSS 230
+ NL ++ DGN++SG IP S L + +S N+L+G IP +L NL +DLS
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 231 NKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV 290
N L G + K+ + + N+L + N+ L L NR G++P+ +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLT 265
Query: 291 NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
LK L SL++ N L G IP G L + ++N+ PL
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 4/220 (1%)
Query: 141 IPKEIGSLRNLEVLDLGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL 199
IP + +L L L +G NNL G IP I + L L + +SG IP + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 200 QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL-TALSMDANNLG 258
LD S N LSGT+P I SL NL + N++ G +P + L T++++ N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTS 318
G IP T L N+ ++ L N G + KN + L N L + +G +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 319 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
L LDL +N+++ ++P + L L++S N +CG IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 38/262 (14%)
Query: 178 LSLDGNKLSGTIPIEIESLRNLQWLDL----SSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
L L G L PI SL NL +L+ N L G IP I L L L ++ +
Sbjct: 55 LDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLK 293
G +P + +K+L L N L G +P ++ L N+ ++ NR +G+IP +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 294 NL-TSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNR 352
L TS+++ N+LTG IP T L +L +DLS N L ++ G+ + L+ N
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 353 ICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKL---FNLASLDLSKNKLSGSIPTEI 409
+ F +GK+ NL LDL N++ G++P +
Sbjct: 233 LA----------------------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 410 GNCSELRNLTLNHNSLNGKLAH 431
L +L ++ N+L G++
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 141/277 (50%), Gaps = 25/277 (9%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
L+LSSN +S + L +L++L+ SSN++ + P + NL +L L + +N +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI- 188
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S L +LTN+E L N+ + P I L NL LSL GN+L TL LT+L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTD 243
Query: 322 LDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 244 LDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 117/268 (43%), Gaps = 58/268 (21%)
Query: 92 LGRLNFSC-----------FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
L +LNFS L+ LD+ SN +S S + L+NL + N ++
Sbjct: 153 LQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 210
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRN 198
P +G L NL+ L L N L GT+ S+ NL L L N++S P+ L
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTK 262
Query: 199 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
L L L +N++S P + L L L+L+ N+L + P I NLK+LT L++ NN+
Sbjct: 263 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 259 GPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSL 298
P S+L LTNI +LS G N+ + P + NL +T L
Sbjct: 319 DISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 299 SLGGNKLTG---------HIPSTLGRLT 317
L T IP+T+ +T
Sbjct: 377 GLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 140/277 (50%), Gaps = 25/277 (9%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
L+LSSN +S + L +L++L SSN++ + P + NL +L L + +N +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI- 188
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S L +LTN+E L N+ + P I L NL LSL GN+L TL LT+L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTD 243
Query: 322 LDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 244 LDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 47/246 (19%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 230
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
GT+ S+ NL L L N++S P+ L L L L +N++S P + L
Sbjct: 231 DIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGL 282
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP------------------ 262
L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS 340
Query: 263 --STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG---------HIPS 311
S+L LTNI +LS G N+ + P + NL +T L L T IP+
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 312 TLGRLT 317
T+ +T
Sbjct: 399 TVKNVT 404
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 140/277 (50%), Gaps = 25/277 (9%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
L+LSSN +S + L +L++L SSN++ + P + NL +L L + +N +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI- 188
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S L +LTN+E L N+ + P I L NL LSL GN+L TL LT+L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTD 243
Query: 322 LDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 244 LDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 47/246 (19%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 230
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
GT+ S+ NL L L N++S P+ L L L L +N++S P + L
Sbjct: 231 DIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGL 282
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP------------------ 262
L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 263 --STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG---------HIPS 311
S+L LTNI +LS G N+ + P + NL +T L L T IP+
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 312 TLGRLT 317
T+ +T
Sbjct: 399 TVKNVT 404
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 26/277 (9%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
L+LSSN +S + L +L++L+ N++ + P + NL +L L + +N +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI- 187
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S L +LTN+E L N+ + P I L NL LSL GN+L TL LT+L
Sbjct: 188 -SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTD 242
Query: 322 LDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 243 LDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 48/268 (17%)
Query: 82 GLQKSNIKGELGRLN-FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
LQ+ N ++ L + L+ LD+ SN +S S + L+NL + N ++
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRN 198
P +G L NL+ L L N L GT+ S+ NL L L N++S P+ L
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTK 261
Query: 199 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
L L L +N++S P + L L L+L+ N+L + P I NLK+LT L++ NN+
Sbjct: 262 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 259 GPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSL 298
P S+L LTNI +LS G N+ + P + NL +T L
Sbjct: 318 DISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 375
Query: 299 SLGGNKLTG---------HIPSTLGRLT 317
L T IP+T+ +T
Sbjct: 376 GLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 26/277 (9%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
L+LSSN +S + L +L++L+ N++ + P + NL +L L + +N +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI- 187
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S L +LTN+E L N+ + P I L NL LSL GN+L TL LT+L
Sbjct: 188 -SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTD 242
Query: 322 LDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 243 LDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 48/268 (17%)
Query: 82 GLQKSNIKGELGRLN-FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
LQ+ N ++ L + L+ LD+ SN +S S + L+NL + N ++
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRN 198
P +G L NL+ L L N L GT+ S+ NL L L N++S P+ L
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTK 261
Query: 199 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
L L L +N++S P + L L L+L+ N+L + P I NLK+LT L++ NN+
Sbjct: 262 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 259 GPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSL 298
P S+L LTNI +LS G N+ + P + NL +T L
Sbjct: 318 DISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 375
Query: 299 SLGGNKLTG---------HIPSTLGRLT 317
L T IP+T+ +T
Sbjct: 376 GLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 144/316 (45%), Gaps = 60/316 (18%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 85
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 86 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 138
Query: 202 LDLSSNKLSG-------------------TIPKEIGSLRNLKELDLSSNKLGGV-LPQEI 241
L+LSSN +S T K + +L L+ LD+SSNK+ + + ++
Sbjct: 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 198
Query: 242 ENLKSLTA-------------------LSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282
NL+SL A LS++ N L TL LTN+ L L N+ +
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256
Query: 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 342
P + L LT L LG N+++ P L LT+L L+L+ NQL P I N
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310
Query: 343 LSYLDLSDNRICGIIP 358
L+YL L N I I P
Sbjct: 311 LTYLTLYFNNISDISP 326
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 47/246 (19%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
GT+ S+ NL L L N++S P+ L L L L +N++S P + L
Sbjct: 235 DIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGL 286
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP------------------ 262
L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344
Query: 263 --STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG---------HIPS 311
S+L LTNI +LS G N+ + P + NL +T L L T IP+
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402
Query: 312 TLGRLT 317
T+ +T
Sbjct: 403 TVKNVT 408
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 144/316 (45%), Gaps = 60/316 (18%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 30 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 84
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201
L+NL +++D+ NN + ++ NL L+L N+++ P++ +L NL
Sbjct: 85 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 137
Query: 202 LDLSSNKLSG-------------------TIPKEIGSLRNLKELDLSSNKLGGV-LPQEI 241
L+LSSN +S T K + +L L+ LD+SSNK+ + + ++
Sbjct: 138 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 197
Query: 242 ENLKSLTA-------------------LSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282
NL+SL A LS++ N L TL LTN+ L L N+ +
Sbjct: 198 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 255
Query: 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 342
P + L LT L LG N+++ P L LT+L L+L+ NQL P I N
Sbjct: 256 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 309
Query: 343 LSYLDLSDNRICGIIP 358
L+YL L N I I P
Sbjct: 310 LTYLTLYFNNISDISP 325
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 47/246 (19%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 178 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 233
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
GT+ S+ NL L L N++S P+ L L L L +N++S P + L
Sbjct: 234 DIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGL 285
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP------------------ 262
L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 286 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 343
Query: 263 --STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG---------HIPS 311
S+L LTNI +LS G N+ + P + NL +T L L T IP+
Sbjct: 344 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 401
Query: 312 TLGRLT 317
T+ +T
Sbjct: 402 TVKNVT 407
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 176 ETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLG 234
+ L L NKLS L L+ L L+ NKL T+P I L+NL+ L ++ NKL
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 235 GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LK 293
+ + L +L L +D N L P LT + YLSLG+N S+P+ + + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157
Query: 294 NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
+L L L N+L +LT L+ L L +NQL + L L L +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
LDL SNKLS K L L+ L L+ NKL + + LK+L L + N L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 262 PSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
P +F +L N+ L L N+ PR +L LT LSLG N+L +LTSL+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L L +NQL + L L L +N++
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 104 QYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNL 161
+ LDL SN LS S+PS+ L+ L +YL +N L T+P I L+NLE L + N L
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 162 NGTIPIEI-GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI--- 217
+PI + + NL L LD N+L P +SL L +L L N+L ++PK +
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 218 ----------------------GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
L LK L L +N+L V ++L+ L L + N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 52/135 (38%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F NL+ L + N L D L NL + L N L P+ SL L L L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKE 216
G N L + +L+ L L N+L + L L+ L L +N+L
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 217 IGSLRNLKELDLSSN 231
SL LK L L N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 297 SLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L L NKL+ RLT L++L L+ N+L + + L L ++DN++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--- 97
Query: 357 IPDELTXXXXXXXXXXXXXXXXGQIPFAI-GKLFNLASLDLSKNKLSGSIPTEIGNCSEL 415
+P + +L NLA L L +N+L P + ++L
Sbjct: 98 ----------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 416 RNLTLNHNSL 425
L+L +N L
Sbjct: 136 TYLSLGYNEL 145
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 30/181 (16%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + N +YL++N +T P SL NL+ L LGSN L G +P+ +
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV----- 83
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG 234
+SL L LDL +N+L+ L +LKEL + NKL
Sbjct: 84 ------------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 235 GVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLK 293
LP+ IE L LT L++D N L IP F RL+++ + L N ++ R+I+ L+
Sbjct: 126 E-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCEC-RDIMYLR 182
Query: 294 N 294
N
Sbjct: 183 N 183
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE 242
+K ++P I + N Q L L N+++ P SL NLKEL L SN+LG + +
Sbjct: 28 SKRHASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 243 NLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLG 301
+L LT L + N L +PS +F RL +++ L + N+ +PR I L +LT L+L
Sbjct: 86 SLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 302 GNKLTGHIPSTLGRLTSL 319
N+L RL+SL
Sbjct: 144 QNQLKSIPHGAFDRLSSL 161
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNN 160
N Q L L N ++ P DSL NL +YL N L G +P + SL L VLDLG+N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
L + +L+ L + NKL+ +P IE L +L L L N+L +IP G+
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--GAF 155
Query: 221 RNLKEL 226
L L
Sbjct: 156 DRLSSL 161
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKE 225
+ G N + L L N+++ P +SL NL+ L L SN+L G +P + SL L
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTV 92
Query: 226 LDLSSNKLGGVLPQEI-ENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284
LDL +N+L VLP + + L L L M N L +P + RLT++ +L+L N+ S
Sbjct: 93 LDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-S 149
Query: 285 IPREIVN-LKNLTSLSLGGN 303
IP + L +LT L GN
Sbjct: 150 IPHGAFDRLSSLTHAYLFGN 169
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
P L N++ L LG N+ G++P + + L LT L LG N+LT + RL L+
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L + N+L + +P I + L++L L N++
Sbjct: 116 ELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F NL+ L LGSN L G++P + DSL+ LT + L N LT L +L+ L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215
+ N L +P I + +L L+LD N+L + L +L L N +
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC-R 176
Query: 216 EIGSLRN 222
+I LRN
Sbjct: 177 DIMYLRN 183
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLTSLQILDLSSN 327
TN + L L N+ P +L NL L LG N+L G +P LT L +LDL +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 328 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGK 387
QL V L L + N++ ++P I +
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKL-------------------------TELPRGIER 133
Query: 388 LFNLASLDLSKNKLSGSIP 406
L +L L L +N+L SIP
Sbjct: 134 LTHLTHLALDQNQLK-SIP 151
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKE 144
SN G L F L LDLG+N L+ +PS + D L +L +++ N LT +P+
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130
Query: 145 IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179
I L +L L L N L I G+ L +L+
Sbjct: 131 IERLTHLTHLALDQNQLKS---IPHGAFDRLSSLT 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 138/325 (42%), Gaps = 47/325 (14%)
Query: 59 QNTSDHCGWVGITCD----------YEG----RITDIGLQKSNIKGELGRLNFSCFPNLQ 104
QN++ W+G D +EG + I LQK +L F CF +Q
Sbjct: 222 QNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQ 280
Query: 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGT 164
LDL + +L+G +P I + +L+ L L +N+ +
Sbjct: 281 ELDLTAAHLNG-------------------------LPSGIEGMNSLKKLVLNANSFDQL 315
Query: 165 IPIEIGSVRNLETLSLDGNKLSGTIPIE-IESLRNLQWLDLSSNKL--SGTIPKEIGSLR 221
I S +L L + GN + +E L NLQ LDLS + + S ++ +LR
Sbjct: 316 CQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNR 280
+L+ L+LS N+ G+ Q + L L + +L P + F+ L + L+L
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL 435
Query: 281 FNGSIPREIVNLKNLTSLSLGGNKLT-GHIPST--LGRLTSLQILDLSSNQLHSSIPLVI 337
+ S + L++L L+L GN G I T L + SL+IL LSS L S
Sbjct: 436 LDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF 495
Query: 338 GNFSALSYLDLSDNRICGIIPDELT 362
+++LDLS N + G D L+
Sbjct: 496 HGLRNVNHLDLSHNSLTGDSMDALS 520
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 35/290 (12%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYEN 135
+ D+ ++ + K +LG NLQ LDL +++ S Q+ +L +L Y+ L N
Sbjct: 326 LRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN 385
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIE-------------------------IG 170
G + LE+LD+ +L+ P +
Sbjct: 386 EPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA 445
Query: 171 SVRNLETLSLDGNKLS-GTIPIE--IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELD 227
+++L L+L GN G+I ++ + +L+ L LSS L + LRN+ LD
Sbjct: 446 GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505
Query: 228 LSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPR 287
LS N L G + +LK L L+M +NN+ P L L+ ++L N + +
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCS- 563
Query: 288 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337
N+ +T +KL +T SL+ + LS +LH +++
Sbjct: 564 ---NIHFITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKLHCGTHMLV 610
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
Query: 122 DSLSNLTYIYLYENNLTGTIPKEIGS-LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180
D+L N T + + N TI S L NL LDL +N S L T+ L
Sbjct: 28 DTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVL 87
Query: 181 DGNKL------SGTIP------------------IEIESLRNLQWLDLSSNKLSGTIPKE 216
GN L S T P I + +L NL+ L L SN +S E
Sbjct: 88 TGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPE 147
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
+NLK LD +N + + ++ +L+ T LS++ N
Sbjct: 148 NFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN 186
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 169 IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 228
I + N+ L+L GNKL ++ L NL +L L+ N+L L NLKEL L
Sbjct: 59 IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 229 SSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 287
N+L +P +F +LTN+ YL+L N+ S+P+
Sbjct: 117 VENQLQS-------------------------LPDGVFDKLTNLTYLNLAHNQLQ-SLPK 150
Query: 288 EIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYL 346
+ + L NLT L L N+L +LT L+ L L NQL S V ++L Y+
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Query: 347 DLSDN 351
L DN
Sbjct: 211 WLHDN 215
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN++YL LG N L S + L+NLT
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDI--SALKELTNLT 88
Query: 129 YIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGT 188
Y+ L N L ++P NG + NL+ L L N+L
Sbjct: 89 YLILTGNQLQ-SLP-------------------NGVF----DKLTNLKELVLVENQLQSL 124
Query: 189 IPIEIESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSL 247
+ L NL +L+L+ N+L ++PK + L NL ELDLS N+L + + L L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 248 TALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIP 286
L + N L +P +F RLT+++Y+ L N ++ + P
Sbjct: 184 KDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
L N+ YL+LG N+ + + L NLT L L GN+L +LT+L+ L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 328 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI-G 386
QL S V + L+YL+L+ N++ +P +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQL-------------------------QSLPKGVFD 154
Query: 387 KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 425
KL NL LDLS N+L ++L++L L N L
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 72/185 (38%), Gaps = 33/185 (17%)
Query: 102 NLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
NL YL L N L S+P+ + D L+NL + L EN L L NL L+L N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220
L ++P + + L NL LDLS N+L L
Sbjct: 145 LQ-SLPKGV-----------------------FDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280
LK+L L N+L V + L SL + + N P I YLS N+
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINK 233
Query: 281 FNGSI 285
+G +
Sbjct: 234 HSGVV 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 40/296 (13%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEV--- 153
F PNL+ LDLGS+ + P L +L + LY L+ + K+ G RNL+
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTR 127
Query: 154 LDLGSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESL--RNLQWLDLSSNKLS 210
LDL N + + G + +L+++ N++ E+E L + L + L++N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 211 GTIPKEIGSLRN------LKELDLSSN----KLGGVLPQEIENLKSLTAL--------SM 252
+ + G N L+ LD+S N + G I ++ + +
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247
Query: 253 DANNLGGPIPSTLFRL--TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP 310
+N+ P +T L +++ +L L R LK+L L+L NK+
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307
Query: 311 STLGRLTSLQILDLSSN---QLHSSIPLVIGNFSAL---SYLDLSDNRICGIIPDE 360
L +LQ+L+LS N +L+SS NF L +Y+DL N I II D+
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSS------NFYGLPKVAYIDLQKNHI-AIIQDQ 356
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 122/269 (45%), Gaps = 28/269 (10%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F NLQ L+L N L S L + YI L +N++ + L L+ LDL
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG-TIPK 215
N L I + ++ + L GNKL T+P +I NL + LS N+L I
Sbjct: 370 RDNALT-----TIHFIPSIPDIFLSGNKLV-TLP-KINLTANL--IHLSENRLENLDILY 420
Query: 216 EIGSLRNLKELDLSSNKL----GGVLPQEIENLKSLTALSMDANNLGGPIPSTL----FR 267
+ + +L+ L L+ N+ G P E SL L + N L + L F
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSEN---PSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 268 -LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSS 326
L++++ L L N N P +L L LSL N+LT + S +L+ILD+S
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISR 535
Query: 327 NQLHSSIPLVIGNFSALSYLDLSDNR-IC 354
NQL + P V F +LS LD++ N+ IC
Sbjct: 536 NQLLAPNPDV---FVSLSVLDITHNKFIC 561
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 32/234 (13%)
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206
+L++L+VL+L N +N + NL+ L+L N L L + ++DL
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGV-----LPQEI---ENLKSLTALSMDAN--- 255
N ++ + L L+ LDL N L + +P L +L +++ AN
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 256 -------NLGGPIPSTLFRLTNIEYLSLGFNRFNG----SIPREIVNLKNLTSLSLGGNK 304
NL I L R+ +++ L L NRF+ P E +L+ L LG N
Sbjct: 408 LSENRLENLD--ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF---LGENM 462
Query: 305 L-----TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L T L+ LQ+L L+ N L+S P V + +AL L L+ NR+
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 42/291 (14%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS--NLTYIYLYEN 135
+T + L K+ I+ +F +L+ +D SN + +++ L L++ L N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 136 NLTGTIPKEIGSLRN------LEVLDLGSNNLNGTIPIEIG-SVRNLETLSL-------- 180
+L + + G N LE+LD+ N I ++ + SL
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 181 -----------DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
D N +G + S+R+L DLS + + +L++LK L+L+
Sbjct: 245 AGFGFHNIKDPDQNTFAG---LARSSVRHL---DLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 289
NK+ + + L +L L++ N LG S + L + Y+ L N +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Query: 290 VNLKNLTSLSLGGNKLT--GHIPS------TLGRLTSLQILDLSSNQLHSS 332
L+ L +L L N LT IPS + +L +L ++L++N +H S
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 163 GTIPIE-IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 221
G IE I + NL L L N+++ P++ +L + L+LS N L I L+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQ 113
Query: 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 281
++K LDL+S ++ V P + L +L L +D N + P L LTN++YLS+G N+
Sbjct: 114 SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQV 169
Query: 282 NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
N P + NL LT+L NK++ P L L +L + L NQ+ PL
Sbjct: 170 NDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSPL 219
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 2/223 (0%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTI 165
LDLG N + + S +L + L EN ++ P +L NL L L SN L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 166 PIEIGS-VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK 224
P+ + + + NL L + NK+ + + L NL+ L++ N L + L +L+
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 225 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284
+L L L + + + +L L L + N+ + RL ++ L + + +
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
+ + NLTSLS+ LT + L L+ L+LS N
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 42/302 (13%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSL---------- 124
E R+ D+G K+ IK L + F+ FP+L+ L+L N +S P ++L
Sbjct: 33 ETRLLDLG--KNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 125 --------------SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIG 170
SNLT + + EN + + L NL+ L++G N+L
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 171 SVRNLETLSLDGNKLSGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
+ +LE L+L+ L+ +IP E + L L L L ++ L LK L++S
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 230 S-NKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFN---RFNGS 284
L + P + L +LT+LS+ NL +P R L + +L+L +N GS
Sbjct: 209 HWPYLDTMTPNCLYGL-NLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ---LHSSIPLVIGNFS 341
+ E++ L+ + L G +L P L L++L++S NQ L S+ +GN
Sbjct: 267 MLHELLRLQ---EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323
Query: 342 AL 343
L
Sbjct: 324 TL 325
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 42/187 (22%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T L LG NR E + +L L L N ++ P L +L+ L L SN+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 329 LHSSIPL-VIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGK 387
L IPL V S L+ LD+S+N+I + + +
Sbjct: 92 L-KLIPLGVFTGLSNLTKLDISENKIVIL------------------------LDYMFQD 126
Query: 388 LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVV 447
L+NL SL++ N L + ++H + +G + + EKC++ S
Sbjct: 127 LYNLKSLEVGDNDL----------------VYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 448 ALEILMG 454
AL L G
Sbjct: 171 ALSHLHG 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L++L+L N +S S + L L I L L P L L VL++ N L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 163 GTIPIEIGSVRNLETLSLDGNKLS 186
SV NLETL LD N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%)
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
NLT + + NLT + L L L+L N ++ + + L+ + L G +L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG 234
+ P L L+ L++S N+L+ S+ NL+ L L SN L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
NL L + NL + + + L L+L N +S + L LQ + L +L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 210 SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
+ P L L+ L++S N+L + ++ +L L +D+N L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 2/187 (1%)
Query: 176 ETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSN-KLG 234
+ + L GN++S +S RNL L L SN L+G L L++LDLS N +L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 235 GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKN 294
V P L L L +D L P L ++YL L N +L N
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 295 LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC 354
LT L L GN++ L SL L L N + P + L L L N +
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL- 212
Query: 355 GIIPDEL 361
++P E+
Sbjct: 213 SMLPAEV 219
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + S NLT ++L+ N L G L LE LDL N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP----KEIG 218
P + +L TL LD L P L LQ+L L N L +P +++G
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLG 152
Query: 219 SL------------------RNLKELD---LSSNKLGGVLPQEIENLKSLTALSMDANNL 257
+L R L LD L N + V P +L L L + ANNL
Sbjct: 153 NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 258 GGPIPSTLFRLTNIEYLSLGFN 279
L L +++YL L N
Sbjct: 213 SMLPAEVLVPLRSLQYLRLNDN 234
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
G + + L + ++ ELG F LQYL L NNL + L NLT+++L+ N
Sbjct: 104 GHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI-E 194
+ L +L+ L L N++ P + L TL L N LS +P E+
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLV 221
Query: 195 SLRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENLKSLTALS 251
LR+LQ+L L+ N + + + + L++ SS+++ LPQ + +LK L A
Sbjct: 222 PLRSLQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCNLPQRLAGRDLKRLAASD 279
Query: 252 MD 253
++
Sbjct: 280 LE 281
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 7/192 (3%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D ++L Y+ L N + T+ L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-GTIPKE 216
+NL + S+RNL L + L +L+ L ++ N +P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLS 275
LRNL LDLS +L + P +L SL L+M +N L +P +F RLT+++ +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIW 524
Query: 276 LGFNRFNGSIPR 287
L N ++ S PR
Sbjct: 525 LHTNPWDCSCPR 536
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 29/187 (15%)
Query: 172 VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLS 229
+++L+ L+ NK G E++ L +L++LDLS N LS G + +LK LDLS
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 230 --------SNKLGGVLPQEIE----NLKSLTALSMD---ANNLGGPIPSTLFR------- 267
SN LG + ++ NLK ++ S+ N + I T R
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 268 --LTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 324
L+++E L + N F + +P L+NLT L L +L P+ L+SLQ+L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 325 SSNQLHS 331
+SNQL S
Sbjct: 502 ASNQLKS 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 12/238 (5%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 307 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 360
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIG-S 219
G +L+ L L N + T+ L L+ LD + L + S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNIEYLSLGF 278
LRNL LD+S L SL L M N+ +P L N+ +L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 279 NRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
+ P +L +L L++ N+L RLTSLQ + L +N S P +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 210 SGTIPKEIGSLRNL 223
++ L +
Sbjct: 162 QSIYCTDLRVLHQM 175
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 40/247 (16%)
Query: 189 IPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE 242
+ + IE +++ Q L+L + K G P L++LK L +SNK GG E++
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFSEVD 345
Query: 243 NLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300
L SL L + N L G + F T+++YL L FN ++ + L+ L L
Sbjct: 346 -LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 403
Query: 301 GGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-GIIP 358
+ L S L +L LD+S + + S+L L ++ N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 359 DELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNL 418
D T +L NL LDLS+ +L PT + S L+ L
Sbjct: 464 DIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 419 TLNHNSL 425
+ N L
Sbjct: 500 NMASNQL 506
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206
S L+VLDL + S+ +L TL L GN + L +LQ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
L+ IG L+ LKEL+++ N I++ K +P
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNL--------IQSFK---------------LPEYFS 146
Query: 267 RLTNIEYLSLGFNR 280
LTN+E+L L N+
Sbjct: 147 NLTNLEHLDLSSNK 160
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 210 SGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
++ L + LDLS N + + P + ++ L L++D N L +P +
Sbjct: 163 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGI 220
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR 287
F RLT+++ + L N ++ S PR
Sbjct: 221 FDRLTSLQKIWLHTNPWDCSCPR 243
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222
G+ +E+ + + L+ K+ +P ++L DLS N L S
Sbjct: 1 GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNL------DLSWNPLRHLGSYSFFSFPE 54
Query: 223 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282
L+ LDLS ++ + ++L L+ L + G PI SL F+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQ------------SLALGAFS 98
Query: 283 G--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGN 339
G S+ + + NL SL + P +G L +L+ L+++ N + S +P N
Sbjct: 99 GLSSLQKLVAVETNLASLE--------NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 340 FSALSYLDLSDNRICGIIPDEL 361
+ L +LDLS N+I I +L
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDL 170
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 210 SGTIPKEIGSLRNLK----ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
++ L + LDLS N + + P + ++ L L++D N L +P +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGI 219
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR 287
F RLT+++ + L N ++ S PR
Sbjct: 220 FDRLTSLQKIWLHTNPWDCSCPR 242
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+E+ + + L+ K+ +P ++L DLS N L S L+ L
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVL 57
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG--S 284
DLS ++ + ++L L+ L + G PI S L+LG F+G S
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQS----------LALG--AFSGLSS 101
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSAL 343
+ + + NL SL + P +G L +L+ L+++ N + S +P N + L
Sbjct: 102 LQKLVAVETNLASLE--------NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 344 SYLDLSDNRICGIIPDEL 361
+LDLS N+I I +L
Sbjct: 152 EHLDLSSNKIQSIYCTDL 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 210 SGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
++ L + LDLS N + + P + ++ L L++D N L +P +
Sbjct: 164 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGI 221
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR 287
F RLT+++ + L N ++ S PR
Sbjct: 222 FDRLTSLQKIWLHTNPWDCSCPR 244
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+E+ + + L+ K+ +P ++L DLS N L S L+ L
Sbjct: 6 VEVVPNITYQCMELNFYKIPDNLPFSTKNL------DLSWNPLRHLGSYSFFSFPELQVL 59
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG--S 284
DLS ++ + ++L L+ L + G PI S L+LG F+G S
Sbjct: 60 DLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQS----------LALG--AFSGLSS 103
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSAL 343
+ + + NL SL + P +G L +L+ L+++ N + S +P N + L
Sbjct: 104 LQKLVAVETNLASLE--------NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 344 SYLDLSDNRICGIIPDEL 361
+LDLS N+I I +L
Sbjct: 154 EHLDLSSNKIQSIYCTDL 171
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 252
I+ L N+++L L NKL + L NL L L+ N+L + + L +L L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 253 DANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIP 310
N L +P +F +LTN+ YL L N+ S+P+ + + L NLT L L N+L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 311 STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
+LT L+ L L+ NQL S V ++L+++ L +N
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 76/182 (41%), Gaps = 5/182 (2%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN++YL LG N L S + L+NLT
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDI--SALKELTNLT 88
Query: 129 YIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGT 188
Y+ L N L L NL+ L L N L + NL L L N+L
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSL 148
Query: 189 IPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 248
+ L NL LDL +N+L L LK+L L+ N+L V + L SLT
Sbjct: 149 PKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLT 208
Query: 249 AL 250
+
Sbjct: 209 HI 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLS 275
I L N++ L L NKL + ++ L +LT L + N L +P+ +F +LTN++ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 276 LGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIP 334
L N+ S+P + + L NLT L L N+L +LT+L LDL +NQL S
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 335 LVIGNFSALSYLDLSDNRICGIIPD 359
V + L L L+DN++ +PD
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKS-VPD 198
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 38/202 (18%)
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
L N+ YL+LG N+ + + L NLT L L GN+L +LT+L+ L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 328 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI-G 386
QL S V + L+YL L N++ +P +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQL-------------------------QSLPKGVFD 154
Query: 387 KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNG----------KLAHTMVVT 436
KL NL LDL N+L ++L+ L+LN N L L H ++
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 437 EKCDVYSFGVVALEILMGRHPG 458
D ++ L + +HPG
Sbjct: 215 NPWDCACSDILYLSRWISQHPG 236
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 123 SLSNLTYIYLYENNLTGTIPK-EIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD 181
+L+N I ++N+T T+ + ++ + L G + G + + NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71
Query: 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI 241
N+++ P++ +L + L+LS N L I L+++K LDL+S ++ V P +
Sbjct: 72 DNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--L 125
Query: 242 ENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLG 301
L +L L +D N + P L LTN++YLS+G + + P + NL LT+L
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181
Query: 302 GNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC 354
NK++ P L L +L + L +NQ+ PL N S L + L++ I
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTIT 230
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 289
SN V +++ + +L+A + G + L N+ L L N+ P +
Sbjct: 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDLAPLK- 82
Query: 290 VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV-IGNFSALSYLDL 348
NL +T L L GN L S + L S++ LDL+S Q+ PL + N L YLDL
Sbjct: 83 -NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-YLDL 138
Query: 349 SDNRICGIIP 358
N+I I P
Sbjct: 139 --NQITNISP 146
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 210 SGTIPKEIGSLRNLK----ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
++ L + LDLS N + + P + ++ L L++D N L +P +
Sbjct: 163 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGI 220
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR 287
F RLT+++ + L N ++ S PR
Sbjct: 221 FDRLTSLQKIWLHTNPWDCSCPR 243
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 89
Query: 262 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 319
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 90 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 127
Query: 320 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 104 LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 210 SGTIPKEIGSLRNLK----ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
++ L + LDLS N + + P + ++ L L++D N L +P +
Sbjct: 164 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGI 221
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR 287
F RLT+++ + L N ++ S PR
Sbjct: 222 FDRLTSLQKIWLHTNPWDCSCPR 244
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+E+ + + L+ K+ +P ++L DLS N L S L+ L
Sbjct: 6 VEVVPNITYQCMELNFYKIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVL 59
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG--S 284
DLS ++ + ++L L+ L + G PI S L+LG F+G S
Sbjct: 60 DLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQS----------LALG--AFSGLSS 103
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSAL 343
+ + + NL SL + P +G L +L+ L+++ N + S +P N + L
Sbjct: 104 LQKLVALETNLASLE--------NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 344 SYLDLSDNRICGIIPDEL 361
+LDLS N+I I +L
Sbjct: 154 EHLDLSSNKIQSIYCTDL 171
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
GR+ + L + ++ ELG F LQYL L N L L NLT+++L+ N
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIES 195
++ + L +L+ L L N + P + L TL L N LS +
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 196 LRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENLKSLTA 249
LR LQ+L L+ N + + + + L++ SS+++ LPQ + +LK L A
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 82/203 (40%), Gaps = 3/203 (1%)
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 221
G + +G + + L GN++S + RNL L L SN L+ L
Sbjct: 21 QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80
Query: 222 NLKELDLSSN-KLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280
L++LDLS N +L V P L L L +D L P L ++YL L N
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 281 FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSSNQLHSSIPLVIGN 339
+L NLT L L GN+++ +P R L SL L L N++ P +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 340 FSALSYLDLSDNRICGIIPDELT 362
L L L N + + + L
Sbjct: 200 LGRLMTLYLFANNLSALPTEALA 222
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 73/201 (36%), Gaps = 25/201 (12%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + + NLT ++L+ N L L LE LDL N L
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG----------- 211
P + L TL LD L P L LQ+L L N L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 212 ------------TIP-KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
++P + L +L L L N++ V P +L L L + ANNL
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 259 GPIPSTLFRLTNIEYLSLGFN 279
L L ++YL L N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
GR+ + L + ++ ELG F LQYL L N L L NLT+++L+ N
Sbjct: 104 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIES 195
++ + L +L+ L L N + P + L TL L N LS +
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 222
Query: 196 LRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENLKSLTA 249
LR LQ+L L+ N + + + + L++ SS+++ LPQ + +LK L A
Sbjct: 223 LRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLAGRDLKRLAA 277
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 5/201 (2%)
Query: 164 TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 223
+P+ I + + + L GN++S + RNL L L SN L+ L L
Sbjct: 24 AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 81
Query: 224 KELDLSSN-KLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282
++LDLS N +L V P L L L +D L P L ++YL L N
Sbjct: 82 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 141
Query: 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSSNQLHSSIPLVIGNFS 341
+L NLT L L GN+++ +P R L SL L L N++ P +
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 342 ALSYLDLSDNRICGIIPDELT 362
L L L N + + + L
Sbjct: 201 RLMTLYLFANNLSALPTEALA 221
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 73/201 (36%), Gaps = 25/201 (12%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + + NLT ++L+ N L L LE LDL N L
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG----------- 211
P + L TL LD L P L LQ+L L N L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 212 ------------TIP-KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
++P + L +L L L N++ V P +L L L + ANNL
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 259 GPIPSTLFRLTNIEYLSLGFN 279
L L ++YL L N
Sbjct: 214 ALPTEALAPLRALQYLRLNDN 234
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 130/278 (46%), Gaps = 37/278 (13%)
Query: 102 NLQYLDLGSNNLSGSIP--------------------SQIDSLSNLTYIYLYENNLTGTI 141
NL+YL+L N ++ P S + +L+NL +YL E+N++
Sbjct: 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS 126
Query: 142 PKEIGSLRNLEVLDLGSN-NLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ 200
P + +L L+LG+N NL+ P+ + L L++ +K+ PI +L +L
Sbjct: 127 P--LANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVKDVTPIA--NLTDLY 180
Query: 201 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260
L L+ N++ P + SL +L N++ + P + N L +L + N +
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDL 236
Query: 261 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
P L L+ + +L +G N+ S + +L L L++G N+++ S L L+ L
Sbjct: 237 SP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLN 290
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
L L++NQL + VIG + L+ L LS N I I P
Sbjct: 291 SLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 25/112 (22%)
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
LTN+EYL+L N+ P + NL LT+L +G NK+T S L LT+L+ L L+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 328 QLHSSIPLV---------------------IGNFSALSYLDLSDNRICGIIP 358
+ PL + N + L+YL ++++++ + P
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP 172
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 122/287 (42%), Gaps = 35/287 (12%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYE 134
E + + LQ+ ++ F CF LQ LDL + +L G
Sbjct: 250 EMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG------------------- 289
Query: 135 NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN--KLSGTIPIE 192
+P + L L+ L L N+ + I + +L L + GN KL +
Sbjct: 290 ------LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGC- 342
Query: 193 IESLRNLQWLDLSSNKL--SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 250
+E L NLQ LDLS N + S ++ +L +L+ L+LS N+ G+ Q + L L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 251 SMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLT-GH 308
+ L P + F+ L ++ L+L + + S + L L L+L GN G
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Query: 309 IPST--LGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
I T L + SL++L LSS L S + +S++DLS N +
Sbjct: 463 ITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 38/257 (14%)
Query: 87 NIKG-ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI 145
N+KG ELG + + F +L + G P NL+ I+ N L + + +
Sbjct: 187 NVKGIELGAFDSTIFQSLNF---------GGTP-------NLSVIF---NGLQNSTTQSL 227
Query: 146 --GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLD 203
G+ +++ D+ S L G + + E+L+L ++ S + LQ LD
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELD 281
Query: 204 LSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN----NLGG 259
L++ L G +P + L LK+L LS N + N SLT L + N +LG
Sbjct: 282 LTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG- 339
Query: 260 PIPSTLFRLTNIEYLSLGFNRFNGS--IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317
L +L N++ L L N S ++ NL +L +L+L N+ G
Sbjct: 340 --VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP 397
Query: 318 SLQILDLSSNQLHSSIP 334
L++LDL+ +LH + P
Sbjct: 398 QLELLDLAFTRLHINAP 414
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 140/365 (38%), Gaps = 70/365 (19%)
Query: 122 DSLSNLTYIYLYENNLTGTIP-KEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180
D+L N T + N TI + L NL LDL +N S L TL L
Sbjct: 26 DTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVL 85
Query: 181 DGNKL------------------------SGTIPIEIESLRNLQWLDLSSNKLSG-TIPK 215
GN L S I + +L NL+ L L SN +S PK
Sbjct: 86 TGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPK 145
Query: 216 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM--DANNLG----GPIPSTLFRLT 269
+ + RNLK LD +N + + +++ +L+ LS+ + NN+ G ST+F+
Sbjct: 146 DFPA-RNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSL 204
Query: 270 NI---EYLSLGFNRFNGSIPREI---------------VNLKNLTSLSLGGNKLTGHIPS 311
N LS+ FN S + + LK L +S+ L H S
Sbjct: 205 NFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFS 264
Query: 312 -----TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXX 366
T T LQ LDL++ L +P + + L L LS N D+L
Sbjct: 265 DISSTTFQCFTQLQELDLTATHL-KGLPSGMKGLNLLKKLVLSVNHF-----DQLCQISA 318
Query: 367 XXXXXXXXXXXXGQIP---FAIG---KLFNLASLDLSKNKLSGS--IPTEIGNCSELRNL 418
G + +G KL NL +LDLS N + S ++ N S L+ L
Sbjct: 319 ANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 419 TLNHN 423
L+HN
Sbjct: 379 NLSHN 383
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 63/289 (21%)
Query: 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS 186
L +++L + ++ + +L NLE L LGSN+++ + RNL+ L N +
Sbjct: 104 LKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIH 163
Query: 187 GTIPIEIESLRNLQW-----LDLSSNKLSG--------TIPKE----------------- 216
I E +R+L+ L+ + N + G TI +
Sbjct: 164 Y---ISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQ 220
Query: 217 --------IGSLRNLKELDLSSNKLGGVLPQEIENLK------------------SLTAL 250
+G+ ++ + D+SS L G+ +E+L L L
Sbjct: 221 NSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQEL 280
Query: 251 SMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHI- 309
+ A +L G +PS + L ++ L L N F+ N +LT L + GN H+
Sbjct: 281 DLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG 339
Query: 310 PSTLGRLTSLQILDLSSNQLHSS--IPLVIGNFSALSYLDLSDNRICGI 356
L +L +LQ LDLS N + +S L + N S L L+LS N G+
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 35/258 (13%)
Query: 102 NLQYLDLGSNNLSGS--IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
NLQ LDL N++ S Q+ +LS+L + L N G + LE+LDL
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 160 NLNGTIP------IEIGSVRNL-------------------ETLSLDGNKLS-GTIPIE- 192
L+ P + V NL L+L GN GTI
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 193 -IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 251
++++ +L+ L LSS L + SL + +DLS N L + +LK + L+
Sbjct: 468 LLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLN 526
Query: 252 MDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 311
+ AN++ P L L+ ++L N + + N+ LT +KL G +
Sbjct: 527 LAANSINIISPRLLPILSQQSTINLSHNPLDCTCS----NIHFLTWYKENLHKLEGSEET 582
Query: 312 TLGRLTSLQILDLSSNQL 329
T SL+ + LS +L
Sbjct: 583 TCANPPSLRGVKLSDVKL 600
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 124/292 (42%), Gaps = 8/292 (2%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H I D IT + L + ++ L NF+ + L LD G N++S P
Sbjct: 13 HLKLTHIPDDLPSNITVLNLTHNQLR-RLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ + NL LDL SN+++ + +NL L L N
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN--LKELDLSSNKLGGVLPQEI 241
LS T L NLQ L L+ NK+ +E+ L N L++LDLSSN L P
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
Query: 242 ENLKSLTALSMDANNLGGPIPSTL-FRLTN--IEYLSLGFNRFNGSIPREIVNLK--NLT 296
+ + L AL ++ L + L + L+N I+ LSL N+ + LK NLT
Sbjct: 192 QTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLT 251
Query: 297 SLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDL 348
L L N L + L SL+ L L N + P S L YL L
Sbjct: 252 QLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 18/224 (8%)
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI---ESLRNLQWLDLSSN 207
L LDL SN L P ++ L L L+ +L+ + ++ S ++Q L L++N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 208 KLSGTIPKEIGSLR--NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
+L T L+ NL +LDLS N L V L SL LS++ NN+ P +
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 266 FRLTNIEYLSL--GFNRFNGSIPRE-------IVNLKNLTSLSLGGNKLTGHIPSTLGRL 316
+ L+N+ YLSL F + + S+ LK L L++ N + +T L
Sbjct: 293 YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGL 352
Query: 317 TSLQILDLS----SNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
SL+ L LS S Q ++ V S L L+L+ N I I
Sbjct: 353 VSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKI 396
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 23/286 (8%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNL 137
+T + L +N+ ++G +FS P+L+YL L NN+ P LSNL Y+ +L
Sbjct: 250 LTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL-----SL 303
Query: 138 TGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLR 197
K+ SL + +D ++ LE L++D N + T L
Sbjct: 304 KRAFTKQSVSLASHPNID----------DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV 353
Query: 198 NLQWLDLSSNKLS-GTIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMD 253
+L++L LS S T+ E SL + L L+L+ N + + L L L +
Sbjct: 354 SLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLG 413
Query: 254 ANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGH--IP 310
N + + +R L NI + L +N++ + +L L L L P
Sbjct: 414 LNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISP 473
Query: 311 STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
S L +L ILDLS+N + + ++ L LD N + +
Sbjct: 474 SPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 122/279 (43%), Gaps = 32/279 (11%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ +L+YL L S + +L+N T++ L + NLT +I +
Sbjct: 349 FTGLVSLKYLSLSKTFTS------LQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFS 402
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205
L L +LDLG N + + E +RN+ + L NK + +LQ L L
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 206 SNKLSGT--IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL------ 257
L P LRNL LDLS+N + + +E L++L L NNL
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 258 ---GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTL 313
GGP+ + L L+++ L+L N + IP + NL L S++LG N L P
Sbjct: 523 ANPGGPV-NFLKGLSHLHILNLESNGLD-EIPVGVFKNLFELKSINLGLNNLNKLEPFIF 580
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 351
TSL+ L+L N + S V G F L+ LD+ N
Sbjct: 581 DDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 304 KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTX 363
KLT HIP L +++ +L+L+ NQL P +S L+ LD N I + P EL
Sbjct: 15 KLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQ 70
Query: 364 XXXXXXXXXXXXXXXGQIP---FAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTL 420
QI F NL LDL N + N L L L
Sbjct: 71 ILPLLKVLNLQHNELSQISDQTFVFCT--NLTELDLMSNSIHKIKSNPFKNQKNLIKLDL 128
Query: 421 NHNSL 425
+HN L
Sbjct: 129 SHNGL 133
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 170 GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
G R++ L LDGN+ + +P E+ + ++L +DLS+N++S + ++ L L LS
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFN 279
N+L + P+ + LKSL LS+ N++ +P F L+ + +L++G N
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
SNK +PK I R++ EL L N+ ++P+E+ N K LT + + N + +
Sbjct: 18 SNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 266 FRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLS 325
+T + L L +NR PR LK+L LSL GN ++ L++L L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 326 SNQLH 330
+N L+
Sbjct: 135 ANPLY 139
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
++T +YL N T +PKE+ + ++L ++DL +N ++ ++ L TL L N+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
P + L++L+ L L N +S L L L + +N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 289
SNK VLP+ I + +T L +D N +P L ++ + L NR + +
Sbjct: 18 SNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 290 VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLS 349
N+ L +L L N+L P T L SL++L L N + + SALS+L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 350 DN 351
N
Sbjct: 135 AN 136
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 277 GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
G IPR++ T L L GN+ T +P L L ++DLS+N++ +
Sbjct: 21 GLKVLPKGIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 337 IGNFSALSYLDLSDNRICGIIP 358
N + L L LS NR+ I P
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPP 95
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 117 IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176
+P ++ + +LT I L N ++ + ++ L L L N L P +++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
LSL GN +S L L L + +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 252
I+ L NL L+LS+N+++ P I L N+ +L L+ NKL + P + NLK+L L +
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 253 DANNLGGPIPSTLFRLTNIEYLSL-GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 311
D N + + L G + NG +V+L L SL LG NK+T +
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITD--IT 170
Query: 312 TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L RLT L L L NQ+ +PL + L L LS N I +
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL 213
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 55 DRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLS 114
D+I N SD GI Y +T + L + I ++ + + PN+ L L N L+
Sbjct: 47 DQIIANNSDIKSVQGIQ--YLPNLTSLNLSNNQI-TDISPIQY--LPNVTKLFLNGNKLT 101
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKE--------------------IGSLRNLEVL 154
P + +L NL +++L EN + + + L LE L
Sbjct: 102 DIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 159
Query: 155 DLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP 214
LG+N + T + + L+TLSL+ N++S +P + L LQ L LS N +S
Sbjct: 160 YLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 213
Query: 215 KEIGSLRNLKELDLSSNK 232
+ + L+NL L+L S +
Sbjct: 214 RALAGLKNLDVLELFSQE 231
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 43/257 (16%)
Query: 79 TDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLT 138
T + LQ ++I EL + +F +L L L +N +S L L +Y+ +N+L
Sbjct: 57 TLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 139 GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL--SGTIPIEIESL 196
P SL L + D N + +RN+ + + GN L SG P + L
Sbjct: 116 EIPPNLPSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 197 RNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANN 256
+ L +L +S KL+G IPK++ L EL L NK+ + E+E+
Sbjct: 173 K-LNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAI---ELED------------- 212
Query: 257 LGGPIPSTLFRLTNIEYLSLGFNRF----NGSIPREIVNLKNLTSLSLGGNKLTGHIPST 312
L R + + L LG N+ NGS+ L L L L NKL+ +P+
Sbjct: 213 --------LLRYSKLYRLGLGHNQIRMIENGSLSF----LPTLRELHLDNNKLS-RVPAG 259
Query: 313 LGRLTSLQILDLSSNQL 329
L L LQ++ L +N +
Sbjct: 260 LPDLKLLQVVYLHTNNI 276
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 140 TIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL 199
+PKEI + +LDL +N+++ + +++L L L NK+S LR L
Sbjct: 47 AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 200 QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259
Q L +S N L IP + S +L EL + N++ V L+++ + M N
Sbjct: 105 QKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN---- 157
Query: 260 PIPSTLFRLTNIEYLSLGFNRFNGS----IPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315
P+ ++ F + L L + R + + IP+++ + L L L NK+ L R
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLR 215
Query: 316 LTSLQILDLSSNQL 329
+ L L L NQ+
Sbjct: 216 YSKLYRLGLGHNQI 229
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 77 RITDIGLQKSNIKG-ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
++ +GL + I+ E G L+F P L+ L L +N LS +P+ + L L +YL+ N
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Query: 136 NLT 138
N+T
Sbjct: 275 NIT 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 196 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
LR +Q DL K+ +P + L DL +NK+ + + +NLK+L L + N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 256 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315
+ P L +E L L N+ +P ++ K L L + N++T S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 316 LTSLQILDLSSNQLHSSIPLVIGNFSA---LSYLDLSDNRICGI---IPDELTXXXXXXX 369
L + +++L +N L SS + G F LSY+ ++D I I +P LT
Sbjct: 144 LNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 370 XXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 425
++ L NLA L LS N +S + N LR L LN+N L
Sbjct: 203 KITKVDAA------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTG---TIPKEIGS 147
E+ +F NL L L +N +S P L L +YL +N L +PK +
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 125
Query: 148 LRNLE------------------VLDLGSNNLNGTIPIEIGSVRNLETLS---------- 179
LR E V++LG+N L + IE G+ + ++ LS
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNIT 184
Query: 180 --------------LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKE 225
LDGNK++ ++ L NL L LS N +S + + +L+E
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 226 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259
L L++NKL V P + + K + + + NN+
Sbjct: 245 LHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA 277
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 36/234 (15%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSN 207
LR ++ DLG + +P + L L NK++ + ++L+NL L L +N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 267
K+S P L L+ L LS N+L LP+++ K+L L + N + S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 268 LTNIEYLSLGFN----------RFNG---------------SIPREIVNLKNLTSLSLGG 302
L + + LG N F G +IP+ + +LT L L G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDG 201
Query: 303 NKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
NK+T ++L L +L L LS N + + + N L L L++N++ +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 33/250 (13%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
+Q DLG + +P L L N +T + +L+NL L L +N ++
Sbjct: 36 VQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222
P + LE L L N+L +P ++ + LQ L + N+++ L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 223 LKELDLSSNKL--GGVLPQEIENLK---------------------SLTALSMDANNLGG 259
+ ++L +N L G+ + +K SLT L +D N +
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
Query: 260 PIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 319
++L L N+ L L FN + + N +L L L NKL +P L +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 320 QILDLSSNQL 329
Q++ L +N +
Sbjct: 266 QVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 196 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
LR +Q DL K+ +P + L DL +NK+ + + +NLK+L L + N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 256 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315
+ P L +E L L N+ +P ++ K L L + N++T S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 316 LTSLQILDLSSNQLHSSIPLVIGNFSA---LSYLDLSDNRICGI---IPDELTXXXXXXX 369
L + +++L +N L SS + G F LSY+ ++D I I +P LT
Sbjct: 144 LNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 370 XXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 425
++ L NLA L LS N +S + N LR L LN+N L
Sbjct: 203 KITKVDAA------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTG---TIPKEIGS 147
E+ +F NL L L +N +S P L L +YL +N L +PK +
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 125
Query: 148 LRNLE------------------VLDLGSNNLNGTIPIEIGSVRNLETLS---------- 179
LR E V++LG+N L + IE G+ + ++ LS
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNIT 184
Query: 180 --------------LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKE 225
LDGNK++ ++ L NL L LS N +S + + +L+E
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 226 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259
L L++NKL V P + + K + + + NN+
Sbjct: 245 LHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA 277
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 36/234 (15%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSN 207
LR ++ DLG + +P + L L NK++ + ++L+NL L L +N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 267
K+S P L L+ L LS N+L LP+++ K+L L + N + S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 268 LTNIEYLSLGFN----------RFNG---------------SIPREIVNLKNLTSLSLGG 302
L + + LG N F G +IP+ + +LT L L G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDG 201
Query: 303 NKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
NK+T ++L L +L L LS N + + + N L L L++N++ +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 33/250 (13%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
+Q DLG + +P L L N +T + +L+NL L L +N ++
Sbjct: 36 VQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222
P + LE L L N+L +P ++ + LQ L + N+++ L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 223 LKELDLSSNKL--GGVLPQEIENLK---------------------SLTALSMDANNLGG 259
+ ++L +N L G+ + +K SLT L +D N +
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
Query: 260 PIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 319
++L L N+ L L FN + + N +L L L NKL +P L +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 320 QILDLSSNQL 329
Q++ L +N +
Sbjct: 266 QVVYLHNNNI 275
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 35/252 (13%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR- 173
+P+ I N Y+ L EN++ LR+LE+L L N + IE+G+
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNG 81
Query: 174 --NLETLSLDGNKLSGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS 230
+L TL L N+L+ T+P + E L L+ L L +N + + +L+ LDL
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG- 139
Query: 231 NKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV 290
E++ L+ ++ + + L N+ YL+LG IP +
Sbjct: 140 ---------ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLK-DIP-NLT 175
Query: 291 NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSD 350
L L L L GN+L P + LTSL+ L L Q+ + + +L L+LS
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 351 NRICGIIPDELT 362
N + + D T
Sbjct: 236 NNLMSLPHDLFT 247
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 7/189 (3%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ P+L L+L N L+ ++P+Q + LS L ++L N + + +L LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 156 LGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP 214
LG L + NL L+L L IP + +L L+ L+LS N+L P
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRP 195
Query: 215 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEY 273
L +L++L L ++ + ++LKSL L++ NNL +P LF L +E
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLER 254
Query: 274 LSLGFNRFN 282
+ L N ++
Sbjct: 255 VHLNHNPWH 263
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 35/252 (13%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR- 173
+P+ I N Y+ L EN++ LR+LE+L L N + IE+G+
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNG 81
Query: 174 --NLETLSLDGNKLSGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS 230
+L TL L N+L+ T+P + E L L+ L L +N + + +L+ LDL
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG- 139
Query: 231 NKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV 290
E++ L+ ++ + + L N+ YL+LG IP +
Sbjct: 140 ---------ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLK-DIP-NLT 175
Query: 291 NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSD 350
L L L L GN+L P + LTSL+ L L Q+ + + +L L+LS
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 351 NRICGIIPDELT 362
N + + D T
Sbjct: 236 NNLMSLPHDLFT 247
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 7/189 (3%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ P+L L+L N L+ ++P+Q + LS L ++L N + + +L LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 156 LGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP 214
LG L + NL L+L L IP + +L L+ L+LS N+L P
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRP 195
Query: 215 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEY 273
L +L++L L ++ + ++LKSL L++ NNL +P LF L +E
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLER 254
Query: 274 LSLGFNRFN 282
+ L N ++
Sbjct: 255 VHLNHNPWH 263
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 117 IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176
I + I LT +YL N+LT +P EI +L NL VLDL N L ++P E+GS L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215
N ++ T+P E +L NLQ+L + N L K
Sbjct: 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSN 207
L NL++ ++ +N I L L L+GN L+ +P EI++L NL+ LDLS N
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
+L+ ++P E+GS LK N + LP E NL +L L ++ N L
Sbjct: 281 RLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 261 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
I + +F+ + L L N +P EI NL NL L L N+LT +P+ LG L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 321 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
N + +++P GN L +L + N
Sbjct: 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 42/137 (30%)
Query: 316 LTSLQILDLSSNQLH--------------SSIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
L++LQI ++S+N + +P I N S L LDLS NR+
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------ 284
Query: 362 TXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLN 421
+P +G F L N ++ ++P E GN L+ L +
Sbjct: 285 -------------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324
Query: 422 HNSLNGKLAHTMVVTEK 438
N L + ++TEK
Sbjct: 325 GNPLEKQF--LKILTEK 339
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS--GTIPIEIESLRNLQWLDLSSNKLSG 211
LD +N L T+ G + LETL L N+L I +++LQ LD+S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 212 TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLT-- 269
+ K+ D S K SL +L+M +N L T+FR
Sbjct: 388 ---------YDEKKGDCSWTK-------------SLLSLNMSSNILTD----TIFRCLPP 421
Query: 270 NIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 329
I+ L L N+ SIP+++V L+ L L++ N+L RLTSLQ + L +N
Sbjct: 422 RIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 330 HSSIPLV 336
S P +
Sbjct: 481 DCSCPRI 487
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 168 EIGSVRNLETLSLDGNKLSGTI-PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
EI S N++ ++ G ++ + P +I +L D S+N L+ T+ + G L L+ L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL---DFSNNLLTDTVFENCGHLTELETL 353
Query: 227 DLSSNKLGGV--LPQEIENLKSLTALSMDANNLG-----GPIPSTLFRLTNIEYLSLGFN 279
L N+L + + + +KSL L + N++ G T L+ L++ N
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS----LNMSSN 409
Query: 280 RFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 331
+I R + + L L NK+ IP + +L +LQ L+++SNQL S
Sbjct: 410 ILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS 458
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 226 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGS 284
LDL +N L + + L SLT L + N L +P+ +F +LT++ YL+L N+ S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 285 IPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSAL 343
+P + + L L L+L N+L +LT L+ L L NQL S V ++L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 344 SYLDLSDN 351
Y+ L DN
Sbjct: 151 QYIWLHDN 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTI 213
LDL +N+L + +L L L GNKL L +L +L+LS+N+L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 214 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIE 272
L LKEL L++N+L + + L L L + N L +P +F RLT+++
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ 151
Query: 273 YLSLGFNRFNGSIP 286
Y+ L N ++ + P
Sbjct: 152 YIWLHDNPWDCTCP 165
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 201 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260
+LDL +N L L +L +L L NKL + L SLT L++ N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90
Query: 261 IPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTS 318
+P+ +F +LT ++ L+L N+ S+P + + L L L L N+L RLTS
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 319 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII 357
LQ + L N + P + YL N+ G++
Sbjct: 150 LQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 248 TALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 305
T L ++ N+L +P+ +F LT++ L LG N+ S+P + N L +LT L+L N+L
Sbjct: 31 TYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88
Query: 306 TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 359
+LT L+ L L++NQL S V + L L L N++ +PD
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPD 141
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 105 YLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
YLDL +N+L S+P+ + D L++LT +YL N L L +L L+L +N L
Sbjct: 32 YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 164 TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 223
++P + + L L+ L L++N+L L L
Sbjct: 90 SLPNGV-----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 224 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 283
K+L L N+L V + L SL + + N P I YLS N+ +G
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSG 179
Query: 284 SI 285
+
Sbjct: 180 VV 181
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 11/160 (6%)
Query: 65 CGWVGITCDYEGRI---TDIGLQKSNIKGELGRLN------FSCFPNLQYLDLGSNNLSG 115
C + C +GR T I Q + + E L F +L L LG N L
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65
Query: 116 SIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ + + L++LTY+ L N L L L+ L L +N L +
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP 214
L+ L L N+L + L +LQ++ L N T P
Sbjct: 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
+ E L L L+ L L WL+L N+L L L L L++N+L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN- 291
+ ++L L L + N L +PS +F RLT ++ L L N+ SIP +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 292 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
L NL +LSL N+L RL LQ + L NQ S
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 281
+ ++LDL S L + L LT L++D N L LT + L L N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 282 NGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 340
S+P + + L L L LGGN+L RLT L+ L L++NQL S
Sbjct: 96 -ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 341 SALSYLDLSDNRI 353
+ L L LS N++
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
+ E LDL S L + L L+LD N+L + L L L L++N+L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 210 SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RL 268
+ L L +L L N+L + + L L L ++ N L IP+ F +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154
Query: 269 TNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 305
TN++ LSL N+ S+P + L L +++L GN+
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQWLDLSS 206
L L L+L N L + L TL L N+L+ ++P+ + + L L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
N+L L LKEL L++N+L + + L +L LS+ N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 267 RLTNIEYLSLGFNRFNGS 284
RL ++ ++L N+F+ S
Sbjct: 177 RLGKLQTITLFGNQFDCS 194
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 52/137 (37%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L +L+L N L D L+ L + L N L L L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKE 216
G N L + L+ L L+ N+L + L NLQ L LS+N+L
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 217 IGSLRNLKELDLSSNKL 233
L L+ + L N+
Sbjct: 175 FDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
+ E L L L+ L L WL+L N+L L L L L++N+L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN- 291
+ ++L L L + N L +PS +F RLT ++ L L N+ SIP +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 292 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
L NL +LSL N+L RL LQ + L NQ S
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 281
+ ++LDL S L + L LT L++D N L LT + L L N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 282 NGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 340
S+P + + L L L LGGN+L RLT L+ L L++NQL S
Sbjct: 96 -ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 341 SALSYLDLSDNRI 353
+ L L LS N++
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 9/190 (4%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
+ E LDL S L + L L+LD N+L + L L L L++N+L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 210 SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RL 268
+ L L +L L N+L + + L L L ++ N L IP+ F +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154
Query: 269 TNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLG-----RLTSLQIL 322
TN++ LSL N+ S+P + L L +++L GN+ TL R S ++
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVK 213
Query: 323 DLSSNQLHSS 332
D + LH S
Sbjct: 214 DGTGQNLHES 223
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQWLDLSS 206
L L L+L N L + L TL L N+L+ ++P+ + + L L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
N+L L LKEL L++N+L + + L +L LS+ N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 267 RLTNIEYLSLGFNRFNGS 284
RL ++ ++L N+F+ S
Sbjct: 177 RLGKLQTITLFGNQFDCS 194
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 79/217 (36%), Gaps = 33/217 (15%)
Query: 224 KELDLSSNKLGGV---LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280
KE+D L V +P + E L + + L +T LT + +L+L +N+
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 281 FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 340
+L L +L L N+L LT L L L NQL S V
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 341 SALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNK 400
+ L L L+ N++ I A KL NL +L LS N+
Sbjct: 131 TKLKELRLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQ 166
Query: 401 LSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 437
L +L+ +TL N + T+ +++
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQ 203
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 52/137 (37%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L +L+L N L D L+ L + L N L L L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKE 216
G N L + L+ L L+ N+L + L NLQ L LS+N+L
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 217 IGSLRNLKELDLSSNKL 233
L L+ + L N+
Sbjct: 175 FDRLGKLQTITLFGNQF 191
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 14/293 (4%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYE 134
E + I LQK + F CF LQ LDL + +LS +PS + LS L + L
Sbjct: 253 EMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310
Query: 135 NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET-----LSLDGNKLSGTI 189
N + +L L + N + + G + NLE LS D + S
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGN--TKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 190 PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQE-IENLKSLT 248
+++ +L +LQ L+LS N+ + L+ LDL+ +L Q +NL L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 249 ALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF-NGSIPR--EIVNLKNLTSLSLGGNKL 305
L++ + L L +++L+L N F G+I + + L L L L L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 306 TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 358
+ L + +DLS N+L SS + + + YL+L+ N I I+P
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGTIPIEIESLRN 198
IP++I L E+L L N L G I + G + +L L L N+L+G P E +
Sbjct: 23 IPRDI-PLHTTELL-LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 199 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
+Q L L NK+ K L LK L+L N++ V+P E+L SLT+L++ +N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 65 CGWVGITCDYEGR-----ITDIGLQKSNI---KGELGRLN----FSCFPNLQYLDLGSNN 112
C G T D GR DI L + + ELGR++ F P+L L+L N
Sbjct: 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 113 LSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSV 172
L+G P+ + S++ + L EN + K L L+ L+L N ++ +P +
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 173 RNLETLSLDGN 183
+L +L+L N
Sbjct: 126 NSLTSLNLASN 136
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 196 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255
L +L L+L N+L+G P +++EL L NK+ + + L L L++ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 256 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315
+ +P + L ++ L+L N FN + + L SL G PS +
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS---K 168
Query: 316 LTSLQILDLSSNQLHSS 332
+ +QI DL ++ S
Sbjct: 169 VRDVQIKDLPHSEFKCS 185
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 292 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
L +L L L N+LTG P+ + +Q L L N++ + L L+L DN
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 352 RICGIIP 358
+I ++P
Sbjct: 113 QISCVMP 119
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
++Q L LG N + L L + LY+N ++ +P L +L L+L SN
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
N + L SL+G P ++ R++Q DL ++
Sbjct: 139 NCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF 182
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262
DLS +K+ + +L++L L+ N++ + L L L++ N LG I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-ID 339
Query: 263 STLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 321
S +F L +E L L +N + + L NL L+L N+L RLTSLQ
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 322 LDLSSNQLHSSIPLV 336
+ L +N S P +
Sbjct: 400 IWLHTNPWDCSCPRI 414
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS 210
++ DL + + + +LE L+L N+++ L +L L+LS N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 211 GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLT 269
+ +L L+ LDLS N + + Q L +L L++D N L +P +F RLT
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLT 395
Query: 270 NIEYLSLGFNRFNGSIPR 287
+++ + L N ++ S PR
Sbjct: 396 SLQKIWLHTNPWDCSCPR 413
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
+LE L L N +N + +L L+L N L E+L L+ LDLS N +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 210 SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLT 269
+ L NLKEL L +N+L V + L SL + + N P
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP------- 412
Query: 270 NIEYLSLGFNR 280
I+YLS N+
Sbjct: 413 RIDYLSRWLNK 423
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 71 TCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYI 130
TCD L KS I L + FS F +L+ L L N ++ + L++L +
Sbjct: 279 TCD---------LSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 131 YLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIP 190
L +N L + +L LEVLDL N++ + NL+ L+LD N+L
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 191 IEIESLRNLQWLDLSSNKLSGTIPK 215
+ L +LQ + L +N + P+
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 110/295 (37%), Gaps = 51/295 (17%)
Query: 90 GELGRLNFSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSL 148
EL +FS +LQ+L + I + LS+L + L N L
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 149 RNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNK 208
NLEVL L NL+G + LSG + L +L+ L L N
Sbjct: 103 ANLEVLTLTQCNLDGAV-------------------LSGNF---FKPLTSLEMLVLRDNN 140
Query: 209 LSGTIPKEIG-SLRNLKELDLSSNKLGGVLPQEIEN----------LKSLTALSMDANNL 257
+ P ++R LDL+ NK+ + +++ N L S+T M+ L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200
Query: 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV--------------NLKNLTSLSLGGN 303
G F+ T+I L L N F S+ + N N+ S S G
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHT 259
Query: 304 KLTGHIPSTLGRLTS--LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
T L + ++ DLS +++ + + V +F+ L L L+ N I I
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 129/339 (38%), Gaps = 41/339 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 13 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN--LKELDLSSNKLGGVLPQEI 241
LS T L NLQ L LS+NK+ +E+ N LK+L+LSSN++ P
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 242 ENLKSLTALSMDANNLGGPIPSTL-----------------------------FRLTNIE 272
+ L L ++ LG + L + TN+
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 273 YLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
L L +N N L L L N + +L L +++ L+L + S
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 333 IPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 362
I L I +FS L +L++ DN I GI + T
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 32/279 (11%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 349 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205
L +LEVLDLG N + + E + N+ + L NK + +LQ L L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 206 SNKLSG--TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL------ 257
L + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 258 ---GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTL 313
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L S
Sbjct: 523 ANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 351
SL+ L+L N + S V G F L+ LD+ N
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 136/346 (39%), Gaps = 24/346 (6%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-G 211
+I + ++ LE L+++ N + G L NL++L LS++ S
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 212 TIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR- 267
T+ E SL + L L+L+ NK+ + L L L + N +G + +R
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL--TGHIPSTLGRLTSLQILDLS 325
L NI + L +N++ + +L L L L PS L +L ILDLS
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 326 SNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXXXXXXXXX 378
+N + + ++ L LDL N + + P
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 379 GQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 423
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 42/237 (17%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQK----------------------SNIKGE 91
K++I + SD W+G + D+GL + N +
Sbjct: 390 KNKISKIESDAFSWLG-----HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLR 149
L R +F+ P+LQ L L L S PS L NLT + L NN+ + L
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 150 NLEVLDLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQ 200
LE+LDL NNL N PI + + +L L+L+ N IP+E+ + L L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELK 563
Query: 201 WLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDAN 255
+DL N L T+P + + + +LK L+L N + V + ++LT L M N
Sbjct: 564 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D ++L Y+ L N + T+ L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-GTIPKE 216
+NL + S+RNL L + L +L+ L ++ N +P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
LRNL LDLS +L + P +L SL L+M NN
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 13/254 (5%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 307 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 360
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIG-S 219
G +L+ L L N + T+ L L+ LD + L + S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNIEYLSLGF 278
LRNL LD+S L SL L M N+ +P L N+ +L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 279 NRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG 338
+ P +L +L L++ N L SLQ+LD S N + +S +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 339 NF-SALSYLDLSDN 351
+F S+L++L+L+ N
Sbjct: 540 HFPSSLAFLNLTQN 553
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 172 VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLS 229
+++L+ L+ NK G E++ L +L++LDLS N LS G + +LK LDLS
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 230 --------SNKLGGVLPQEIE----NLKSLTALSMD---ANNLGGPIPSTLFR------- 267
SN LG + ++ NLK ++ S+ N + I T R
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 268 --LTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 324
L+++E L + N F + +P L+NLT L L +L P+ L+SLQ+L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 325 SSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
S N S ++L LD S N I EL
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 210 SGTIPKEIGSLRNL 223
++ L +
Sbjct: 162 QSIYCTDLRVLHQM 175
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 6/204 (2%)
Query: 66 GWVGITCDYEG--RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
G + ++ ++ G ++ + Q SN+K F NL YLD+ + + +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 124 LSNLTYIYLYENNLT-GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182
LS+L + + N+ +P LRNL LDL L P S+ +L+ L++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL-RNLKELDLSSNKLGGVLPQE- 240
N + L +LQ LD S N + + +E+ +L L+L+ N +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Query: 241 -IENLKSLTALSMDANNLGGPIPS 263
++ +K L ++ + PS
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPS 587
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 40/247 (16%)
Query: 189 IPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE 242
+ + IE +++ Q L+L + K G P L++LK L +SNK GG E++
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFSEVD 345
Query: 243 NLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300
L SL L + N L G + F T+++YL L FN ++ + L+ L L
Sbjct: 346 -LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 403
Query: 301 GGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-GIIP 358
+ L S L +L LD+S + + S+L L ++ N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 359 DELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNL 418
D T +L NL LDLS+ +L PT + S L+ L
Sbjct: 464 DIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 419 TLNHNSL 425
++HN+
Sbjct: 500 NMSHNNF 506
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206
S L+VLDL + S+ +L TL L GN + L +LQ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
L+ IG L+ LKEL+++ N I++ K +P
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNL--------IQSFK---------------LPEYFS 146
Query: 267 RLTNIEYLSLGFNR 280
LTN+E+L L N+
Sbjct: 147 NLTNLEHLDLSSNK 160
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 129/339 (38%), Gaps = 41/339 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 23 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN--LKELDLSSNKLGGVLPQEI 241
LS T L NLQ L LS+NK+ +E+ N LK+L+LSSN++ P
Sbjct: 142 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 201
Query: 242 ENLKSLTALSMDANNLGGPIPSTL-----------------------------FRLTNIE 272
+ L L ++ LG + L + TN+
Sbjct: 202 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 261
Query: 273 YLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
L L +N N L L L N + +L L +++ L+L + S
Sbjct: 262 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 321
Query: 333 IPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 362
I L I +FS L +L++ DN I GI + T
Sbjct: 322 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 360
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 32/279 (11%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 359 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 412
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205
L +LEVLDLG N + + E + N+ + L NK + +LQ L L
Sbjct: 413 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 472
Query: 206 SNKLSG--TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL------ 257
L + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 473 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 532
Query: 258 ---GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTL 313
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L S
Sbjct: 533 ANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 590
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 351
SL+ L+L N + S V G F L+ LD+ N
Sbjct: 591 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 136/346 (39%), Gaps = 24/346 (6%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-G 211
+I + ++ LE L+++ N + G L NL++L LS++ S
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 378
Query: 212 TIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR- 267
T+ E SL + L L+L+ NK+ + L L L + N +G + +R
Sbjct: 379 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 438
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL--TGHIPSTLGRLTSLQILDLS 325
L NI + L +N++ + +L L L L PS L +L ILDLS
Sbjct: 439 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Query: 326 SNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXXXXXXXXX 378
+N + + ++ L LDL N + + P
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 558
Query: 379 GQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 423
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 559 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 42/237 (17%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQK----------------------SNIKGE 91
K++I + SD W+G + D+GL + N +
Sbjct: 400 KNKISKIESDAFSWLG-----HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 454
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLR 149
L R +F+ P+LQ L L L S PS L NLT + L NN+ + L
Sbjct: 455 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 514
Query: 150 NLEVLDLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQ 200
LE+LDL NNL N PI + + +L L+L+ N IP+E+ + L L+
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELK 573
Query: 201 WLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDAN 255
+DL N L T+P + + + +LK L+L N + V + ++LT L M N
Sbjct: 574 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 129/339 (38%), Gaps = 41/339 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 18 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN--LKELDLSSNKLGGVLPQEI 241
LS T L NLQ L LS+NK+ +E+ N LK+L+LSSN++ P
Sbjct: 137 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 196
Query: 242 ENLKSLTALSMDANNLGGPIPSTL-----------------------------FRLTNIE 272
+ L L ++ LG + L + TN+
Sbjct: 197 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 256
Query: 273 YLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
L L +N N L L L N + +L L +++ L+L + S
Sbjct: 257 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 316
Query: 333 IPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 362
I L I +FS L +L++ DN I GI + T
Sbjct: 317 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 355
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 32/279 (11%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 354 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 407
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205
L +LEVLDLG N + + E + N+ + L NK + +LQ L L
Sbjct: 408 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 467
Query: 206 SNKLSG--TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL------ 257
L + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 468 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 527
Query: 258 ---GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTL 313
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L S
Sbjct: 528 ANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 585
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 351
SL+ L+L N + S V G F L+ LD+ N
Sbjct: 586 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 136/346 (39%), Gaps = 24/346 (6%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-G 211
+I + ++ LE L+++ N + G L NL++L LS++ S
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 212 TIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR- 267
T+ E SL + L L+L+ NK+ + L L L + N +G + +R
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 433
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL--TGHIPSTLGRLTSLQILDLS 325
L NI + L +N++ + +L L L L PS L +L ILDLS
Sbjct: 434 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Query: 326 SNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXXXXXXXXX 378
+N + + ++ L LDL N + + P
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 553
Query: 379 GQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 423
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 554 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 42/237 (17%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQK----------------------SNIKGE 91
K++I + SD W+G + D+GL + N +
Sbjct: 395 KNKISKIESDAFSWLG-----HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 449
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLR 149
L R +F+ P+LQ L L L S PS L NLT + L NN+ + L
Sbjct: 450 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 509
Query: 150 NLEVLDLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQ 200
LE+LDL NNL N PI + + +L L+L+ N IP+E+ + L L+
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELK 568
Query: 201 WLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDAN 255
+DL N L T+P + + + +LK L+L N + V + ++LT L M N
Sbjct: 569 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 12/226 (5%)
Query: 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS---VRNLETLSLD 181
SN Y+ L ENN+ L +LEVL LG N++ IE+G+ + +L TL L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELF 131
Query: 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS-NKLGGVLPQE 240
N L+ E L L+ L L +N + + +L LDL KL +
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 241 IENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300
E L +L L++ N+ +P+ L L +E L + N F P L +L L +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 301 GGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYL 346
++++ + L SL L+L+ N L SS+P + F+ L YL
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDL--FTPLRYL 292
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 3/155 (1%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F +L+ L LG N++ + L++L + L++N LT L L L L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154
Query: 157 GSNNLNGTIPIEIGSVRNLETLSL-DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215
+N + V +L L L + KL E L NL++L+L +
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P 212
Query: 216 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 250
+ L L+EL++S N + P L SL L
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 109/256 (42%), Gaps = 17/256 (6%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 331 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 384
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIES----LRNLQWLDLSSNKLSGTIPKEIG 218
S + T+SL LS I + S L L+ LD + L +
Sbjct: 385 FK---GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441
Query: 219 -SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNIEYLSL 276
SLRNL LD+S L SL L M N+ +P L N+ +L L
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 277 GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
+ P +L +L L++ N L SLQ+LD S N + +S
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 337 IGNF-SALSYLDLSDN 351
+ +F S+L++L+L+ N
Sbjct: 562 LQHFPSSLAFLNLTQN 577
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQIDSLS-NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D + +L Y+ L N + T+ L LE LD
Sbjct: 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 429
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS-GTIPKE 216
+NL + S+RNL L + L +L+ L ++ N +P
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
LRNL LDLS +L + P +L SL L+M NN
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKL 209
L+ L NL IG ++ L+ L++ N + S +P +L NL+ LDLSSNK+
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Query: 210 SGTIPKEIGSLRNL 223
++ L +
Sbjct: 186 QSIYCTDLRVLHQM 199
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 6/204 (2%)
Query: 66 GWVGITCDYEG--RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
G + ++ ++ G ++ + Q SN+K F NL YLD+ + + +
Sbjct: 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467
Query: 124 LSNLTYIYLYENNLT-GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182
LS+L + + N+ +P LRNL LDL L P S+ +L+ L++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL-RNLKELDLSSNKLGGVLPQE- 240
N + L +LQ LD S N + + +E+ +L L+L+ N +
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587
Query: 241 -IENLKSLTALSMDANNLGGPIPS 263
++ +K L ++ + PS
Sbjct: 588 FLQWIKDQRQLLVEVERMECATPS 611
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 172 VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLS 229
+++L+ L+ NK G E++ L +L++LDLS N LS G + +LK LDLS
Sbjct: 348 LKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 230 --------SNKLGGVLPQEIE----NLKSLTALSMD---ANNLGGPIPSTLFR------- 267
SN LG + ++ NLK ++ S+ N + I T R
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 268 --LTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 324
L+++E L + N F + +P L+NLT L L +L P+ L+SLQ+L++
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 325 SSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
S N S ++L LD S N I EL
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 40/247 (16%)
Query: 189 IPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE 242
+ + IE +++ Q L+L + K G P L++LK L +SNK GG E++
Sbjct: 314 VSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFSEVD 369
Query: 243 NLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300
L SL L + N L G + F +++YL L FN ++ + L+ L L
Sbjct: 370 -LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 427
Query: 301 GGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-GIIP 358
+ L S L +L LD+S + + S+L L ++ N +P
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 359 DELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNL 418
D T +L NL LDLS+ +L PT + S L+ L
Sbjct: 488 DIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 419 TLNHNSL 425
++HN+
Sbjct: 524 NMSHNNF 530
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206
S L+VLDL + S+ +L TL L GN + L +LQ L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
L+ IG L+ LKEL+++ N I++ K +P
Sbjct: 134 TNLASLENFPIGHLKTLKELNVAHNL--------IQSFK---------------LPEYFS 170
Query: 267 RLTNIEYLSLGFNR 280
LTN+E+L L N+
Sbjct: 171 NLTNLEHLDLSSNK 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 38/255 (14%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLT--GTIPKEIGSLRNLEVLDLGSNNLNG 163
L+L SN L D L+ LT + L N L+ G + +L+ LDL NG
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNG 89
Query: 164 TIPIE--IGSVRNLETLSLDGNKLSGTIPIEIE-SLRNLQWLDLSSNKLSGTIPKEIGSL 220
I + + LE L + L + SLRNL +LD+S L
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 221 RNLKELDLSSNKLG-GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFN 279
+L+ L ++ N LP L++LT L + L P+ L++++ L++ N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 280 RFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337
F + P + +N SLQ+LD S N + +S +
Sbjct: 210 NFFSLDTFPYKCLN--------------------------SLQVLDYSLNHIMTSKKQEL 243
Query: 338 GNF-SALSYLDLSDN 351
+F S+L++L+L+ N
Sbjct: 244 QHFPSSLAFLNLTQN 258
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 5/212 (2%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS--GTIPIEIESLRNLQWLDLSSNKLSG 211
L+L SN L + L LSL N LS G +L++LDLS N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91
Query: 212 TIPKEIGSLRNLKELDLSSNKLGGVLPQEIE-NLKSLTALSMDANNLGGPIPSTLFRLTN 270
T+ L L+ LD + L + + +L++L L + + L++
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 271 IEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 329
+E L + N F + +P L+NLT L L +L P+ L+SLQ+L++S N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 330 HSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
S ++L LD S N I EL
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEI 217
N G + G + L L+ NKL + L L L LSSN LS G +
Sbjct: 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 218 GSLRNLKELDLSSNKLGGV--LPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYL 274
+LK LDLS N GV + L+ L L +NL ++F L N+ YL
Sbjct: 75 FGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131
Query: 275 SLGFNR----FNGSIPREIVN-LKNLTSLSLGGNKLT-GHIPSTLGRLTSLQILDLSSNQ 328
+ FNG I N L +L L + GN +P L +L LDLS Q
Sbjct: 132 DISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 329 LHSSIPLVIGNFSALSYLDLSDNRI 353
L P + S+L L++S N
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 6/204 (2%)
Query: 66 GWVGITCDYEG--RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
G + ++ ++ G ++ + Q SN+K F NL YLD+ + + +
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 124 LSNLTYIYLYENNLT-GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182
LS+L + + N+ +P LRNL LDL L P S+ +L+ L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL-RNLKELDLSSNKLGGVLPQE- 240
N + L +LQ LD S N + + +E+ +L L+L+ N +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
Query: 241 -IENLKSLTALSMDANNLGGPIPS 263
++ +K L ++ + PS
Sbjct: 269 FLQWIKDQRQLLVEVERMECATPS 292
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 225 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFN 282
L+L SNKL + + L LT LS+ +N L G + F T+++YL L FN
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90
Query: 283 GSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFS 341
++ + L+ L L + L S L +L LD+S + + S
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 342 ALSYLDLSDNRIC-GIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNK 400
+L L ++ N +PD T +L NL LDLS+ +
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFT------------------------ELRNLTFLDLSQCQ 186
Query: 401 LSGSIPTEIGNCSELRNLTLNHNSL 425
L PT + S L+ L ++HN+
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 36/242 (14%)
Query: 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+N + L+EN + LR+LE+L L N++ IEIG+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT---IEIGA------------- 107
Query: 185 LSGTIPIEIESLRNLQWLDLSSNKLSGTIPK-EIGSLRNLKELDLSSNKLGGVLPQEIEN 243
L NL L+L N+L+ TIP L LKEL L +N + +
Sbjct: 108 --------FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 244 LKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLK---NLTSLS 299
+ SL L + I F L+N+ YL+L REI NL L L
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-----REIPNLTPLIKLDELD 213
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 359
L GN L+ P + L LQ L + +Q+ N +L ++L+ N + ++P
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPH 272
Query: 360 EL 361
+L
Sbjct: 273 DL 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 5/188 (2%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F+ NL L+L N L+ LS L ++L N + + +L LDL
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 157 GS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215
G L+ + NL L+L L IP + L L LDLS N LS P
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPG 225
Query: 216 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYL 274
L +L++L + +++ + +NL+SL +++ NNL +P LF L ++E +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERI 284
Query: 275 SLGFNRFN 282
L N +N
Sbjct: 285 HLHHNPWN 292
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 106 LDLGSNNLSGSIPSQIDS-LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGT 164
LDL NNLS + L+NL + L N+L + + NL LDL SN+L+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 165 IPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI----GSL 220
++ LE L L N + E + LQ L LS N++S P E+ L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162
Query: 221 RNLKELDLSSNKLGGVLPQEIENL 244
L LDLSSNKL + +++ L
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKL 186
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F PNL+YLDL SN+L L L + LY N++ + L+ L L
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
N + P+E+ DGNKL L LDLSSNKL
Sbjct: 144 SQNQI-SRFPVELIK---------DGNKLP-----------KLMLLDLSSNKL 175
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR--NLETLSLDGNKLSGTIPIEIESLRN 198
+P+ + S L LDL NNL + E R NL +L L N L+ + N
Sbjct: 33 VPQSLPSYTAL--LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 199 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258
L++LDLSSN L L+ L+ L L +N + V E++ L L + N +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 292 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
L NL SL L N L + +L+ LDLSSN LH+ + + AL L L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 352 RICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI----GKLFNLASLDLSKNKL 401
I ++ + P + KL L LDLS NKL
Sbjct: 123 HIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 215 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEY 273
+ + L LK ++ +L + + ++++L+ L + AN +PS LF L N+E
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLES 174
Query: 274 LSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332
+ G N+ +PR I + L L+L N+L RLTSLQ + L +N S
Sbjct: 175 IEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 233
Query: 333 IPLV 336
P +
Sbjct: 234 CPRI 237
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 169 IGSVRNLETLSLDGNKLSGTIPIEI-ESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKEL 226
+ +RNL L L N +P + + L NL+ ++ SNKL +P+ I G + LK+L
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQL 199
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280
+L+SN+L V + L SL + + N P I+YLS N+
Sbjct: 200 NLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 246
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 251
+ +RNL L+L +N +P + L NL+ ++ SNKL + + L L+
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLN 200
Query: 252 MDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 287
+ +N L +P +F RLT+++ + L N ++ S PR
Sbjct: 201 LASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 120 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVPL 172
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 173 --ARLTKLQNLYLSKNHISDL 191
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 37 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 91
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 92 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 149
Query: 169 IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 228
+ + L+TLSL+ N++ +P + L LQ L LS N +S ++ +LR LK LD+
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS-----DLRALRGLKNLDV 202
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 436 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDII 495
+EKCDV+S+G++ E++ R P + GP ++ + PP+ + + + I
Sbjct: 181 SEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI- 233
Query: 496 LVSTIAFACLSSQPKSRPTMQRI 518
++ C S P RP+M+ I
Sbjct: 234 --ESLMTRCWSKDPSQRPSMEEI 254
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 436 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDII 495
+EKCDV+S+G++ E++ R P + GP ++ + PP+ + + + I
Sbjct: 182 SEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI- 234
Query: 496 LVSTIAFACLSSQPKSRPTMQRI 518
++ C S P RP+M+ I
Sbjct: 235 --ESLMTRCWSKDPSQRPSMEEI 255
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 119 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 171
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 172 --AGLTKLQNLYLSKNHISDL 190
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 53 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 107
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 165
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 232
S +P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 2/183 (1%)
Query: 170 GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
G +++L L N+++ +++ NLQ L L+SN ++ SL +L+ LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLG-FNRFNGSIPR 287
N L + + L SLT L++ N ++LF LT ++ L +G + F +
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 288 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLD 347
+ L L L + + L + P +L + ++ L L Q + + + S++ L+
Sbjct: 143 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 202
Query: 348 LSD 350
L D
Sbjct: 203 LRD 205
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTI 165
LDL +N ++ S + NL + L N + SL +LE LDL N L+
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 166 PIEIGSVRNLETLSLDGN--KLSGTIPIEIESLRNLQWLDLSS-NKLSGTIPKEIGSLRN 222
+ +L L+L GN K G + L LQ L + + + + K+ L
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 149
Query: 223 LKELDLSSNKLGGVLPQEIENLKSLTAL 250
L+EL++ ++ L P+ ++++++++ L
Sbjct: 150 LEELEIDASDLQSYEPKSLKSIQNVSHL 177
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 10/249 (4%)
Query: 170 GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
G +++L L N+++ +++ NLQ L L+SN ++ SL +L+ LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLG-FNRFNGSIPR 287
N L + + L SLT L++ N ++LF LT ++ L +G + F +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 288 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLD 347
+ L L L + + L + P +L + ++ L L Q + + + S++ L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 348 LSDNRICGIIPDELTXXXXXXXXXXXX---XXXXGQIPFAIGKLFN----LASLDLSKNK 400
L D + EL+ + F + KL N L L+ S+N+
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288
Query: 401 LSGSIPTEI 409
L S+P I
Sbjct: 289 LK-SVPDGI 296
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 33/250 (13%)
Query: 96 NFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGS------LR 149
+FS +L++LDL N LS S LS+LT++ NL G K +G L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL-----NLLGNPYKTLGETSLFSHLT 149
Query: 150 NLEVLDLGSNNLNGTIPIE---IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206
L++L +G N++ I+ + LE L +D + L P ++S++N+ L L
Sbjct: 150 KLQILRVG--NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 266
+ + + +++ L+L L E+ + + N+L I F
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------TGETNSL---IKKFTF 256
Query: 267 RLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSS 326
R I SL + + + + L L N+L RLTSLQ + L +
Sbjct: 257 RNVKITDESLF------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 327 NQLHSSIPLV 336
N S P +
Sbjct: 311 NPWDCSCPRI 320
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL +N ++ S + NL + L N + SL +LE LDL N L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 163 GTIPIEIGSVRNLETLSLDGN--KLSGTIPIEIESLRNLQWLDLSS-NKLSGTIPKEIGS 219
+ +L L+L GN K G + L LQ L + + + + K+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLKSLTAL 250
L L+EL++ ++ L P+ ++++++++ L
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 174
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 175 --AGLTKLQNLYLSKNHISDL 193
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 116
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 117 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 169
Query: 336 VIGNFSALSYLDLSDNRI------CGI 356
+ L L LS N I CG+
Sbjct: 170 AC--LTKLQNLYLSKNHISDLRALCGL 194
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 88
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 89 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 146
Query: 169 IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 228
+ + L+TLSL+ N++S +P + L LQ L LS N +S + + L+NL L+L
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDL--RALCGLKNLDVLEL 202
Query: 229 SSNK 232
S +
Sbjct: 203 FSQE 206
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 120 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 172
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 173 --AGLTKLQNLYLSKNHISDL 191
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 37 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 91
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 92 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 149
Query: 169 IGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 228
+ + L+TLSL+ N++S +P + L LQ L LS N +S + + L+NL L+L
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 205
Query: 229 SSNK 232
S +
Sbjct: 206 FSQE 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 174
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 175 --AGLTKLQNLYLSKNHISDL 193
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 116
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 117 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 169
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 170 --AGLTKLQNLYLSKNHISDL 188
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 53 WKDRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNN 112
+ + I N +T + I I S+IK G PN+ L L N
Sbjct: 18 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 74
Query: 113 LSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE--------------------IGSLRNLE 152
L+ P + +L NL +++L EN + + + L LE
Sbjct: 75 LTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 132
Query: 153 VLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGT 212
L LG+N + T + + L+TLSL+ N++S +P + L LQ L LS N +S
Sbjct: 133 SLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 188
Query: 213 IPKEIGSLRNLKELDLSSNK 232
+ + L+NL L+L S +
Sbjct: 189 --RALAGLKNLDVLELFSQE 206
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
+ L N + P + L+ +DLS+N++ + P + L+SL +L + N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-L 95
Query: 262 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
P +LF L +++ L L N+ N +L NL LSL NKL T L ++Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 321 ILDLSSN 327
+ L+ N
Sbjct: 156 TMHLAQN 162
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
G I + IT+I L+++ IK + FS + L+ +DL +N +S P L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 126 NLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+L + LY N +T +PK + L +L++L L +N +N + NL LSL NK
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 185 LSGTIPIEIESLRNLQWLDLSSN 207
L LR +Q + L+ N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS 186
+T I L +N + P + L +DL +N ++ P +R+L +L L GNK++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 187 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 246
E L +LQ L L++NK++ L NL L L NKL + L++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 247 LTALSMDAN 255
+ + + N
Sbjct: 154 IQTMHLAQN 162
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ 200
+P+ I +R L N + P + L + L N++S P + LR+L
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 201 WLDLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259
L L NK++ +PK + L +L+ L L++NK+ + ++L +L LS+ N L
Sbjct: 84 SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 260 PIPSTLFRLTNIEYLSLGFNRF 281
T L I+ + L N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261
+ L N + P + L+ +DLS+N++ + P + L+SL +L + N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-L 95
Query: 262 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 320
P +LF L +++ L L N+ N +L NL LSL NKL T L ++Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 321 ILDLSSN 327
+ L+ N
Sbjct: 156 TMHLAQN 162
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
G I + IT+I L+++ IK + FS + L+ +DL +N +S P L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 126 NLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+L + LY N +T +PK + L +L++L L +N +N + NL LSL NK
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 185 LSGTIPIEIESLRNLQWLDLSSN 207
L LR +Q + L+ N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS 186
+T I L +N + P + L +DL +N ++ P +R+L +L L GNK++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 187 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 246
E L +LQ L L++NK++ L NL L L NKL + L++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 247 LTALSMDAN 255
+ + + N
Sbjct: 154 IQTMHLAQN 162
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ 200
+P+ I +R L N + P + L + L N++S P + LR+L
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 201 WLDLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259
L L NK++ +PK + L +L+ L L++NK+ + ++L +L LS+ N L
Sbjct: 84 SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 260 PIPSTLFRLTNIEYLSLGFNRF 281
T L I+ + L N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I A + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQIFPDA-----AFAETIKANLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 232
S +P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I A + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQIFPDA-----AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 232
S +P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 217 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 276
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 277 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 336 VIGNFSALSYLDLSDNRICGI 356
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQI-----FPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 232
S +P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 225 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNG 283
L+L SNKL + + L LT LS+ N + +P +F +LT + L L N+
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ- 89
Query: 284 SIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
S+P + + L L L+L N+L RLTSLQ + L +N S P +
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS 219
N G + G + L L+ NKL + L L L LS N++
Sbjct: 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74
Query: 220 LRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGF 278
L L L L NKL + + L L L++D N L +P +F RLT+++ + L
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT 133
Query: 279 NRFNGSIPR 287
N ++ S PR
Sbjct: 134 NPWDCSCPR 142
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 246 SLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGN 303
S T L +++N L +P +F +LT + LSL N+ S+P + + L LT L L N
Sbjct: 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86
Query: 304 KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 351
KL +LT L+ L L +NQL S + ++L + L N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L L L N + D L+ LT +YL+EN L L L+ L L
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGT 212
+N L + +L+ + L N + P I+ L +WL+ +S K G+
Sbjct: 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLS--RWLNKNSQKEQGS 160
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTI 213
L+L SN L + L LSL N++ + L L L L NKL
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 214 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEY 273
L LKEL L +N+L V + L SL + + N P I+Y
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDY 145
Query: 274 LSLGFNR 280
LS N+
Sbjct: 146 LSRWLNK 152
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTI 165
L+L SN L D L+ LT + L +N + L L +L L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 166 PIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215
+ L+ L+LD N+L + L +LQ + L +N + P+
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 261 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSL 319
IPS+ RL L N+ S+P + + L LT LSL N++ +LT L
Sbjct: 26 IPSSATRL------ELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 320 QILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 359
IL L N+L S V + L L L N++ +PD
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPD 117
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+ G + + L L+ N+++ P + L NLQ L +SNKL+ L L +L
Sbjct: 27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSM 252
DL+ N L + +NLKSLT + +
Sbjct: 87 DLNDNHLKSIPRGAFDNLKSLTHIYL 112
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 187 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 246
++P I + + WL+ +N+++ P L NL++L +SNKL + + L
Sbjct: 25 ASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 247 LTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTS 297
LT L ++ N+L IP F L ++ ++ L N ++ R+I+ L+N +
Sbjct: 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC-RDIMYLRNWVA 132
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T+ + L L N+ P +L NL L NKLT +LT L LDL+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 329 LHSSIPLVIGNFSALSYLDLSDN 351
L S N +L+++ L +N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
Q L L +N ++ P D L NL +Y N LT L L LDL N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 164 TIPIEIGSVRNLETLS 179
I G+ NL++L+
Sbjct: 96 ---IPRGAFDNLKSLT 108
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 224 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFN 282
+ L L++N++ + P ++L +L L ++N L IP+ +F +LT + L L N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 283 GSIPR-EIVNLKNLTSLSLGGN 303
SIPR NLK+LT + L N
Sbjct: 95 -SIPRGAFDNLKSLTHIYLYNN 115
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL-VIGNFS 341
S+P I K L L N++T P L +LQ L +SN+L ++IP V +
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLT 81
Query: 342 ALSYLDLSDNRI 353
L+ LDL+DN +
Sbjct: 82 QLTQLDLNDNHL 93
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
F L LDL N+L D+L +LT+IYLY NN ++I LRN
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDIMYLRN 129
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 114 SGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR 173
S PSQ L +N ++P I + + + L L +N + P +
Sbjct: 3 SAGCPSQCSCDQTLVNC---QNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLV 57
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
NL+ L + NKL+ + L L LDL+ N L +IP+ G+ NLK L
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR--GAFDNLKSL 107
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLR 149
E+ F+ +Q L +G N + P ++ LT + L N+L+ ++P+ I +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
L L + +NNL + +L+ L L N+L+ +++ + +L ++S N L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL 198
Query: 210 SG-TIPKEIGSLRNLKELDLSSNKLGGVL-PQEIENLKSLTALSMDANNLGGPIPSTLFR 267
S IP + +ELD S N + V P +E LT L + NNL + L
Sbjct: 199 STLAIPIAV------EELDASHNSINVVRGPVNVE----LTILKLQHNNLTD--TAWLLN 246
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSS 326
+ + L +N + V ++ L L + N+L + G+ + +L++LDLS
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSH 304
Query: 327 NQL 329
N L
Sbjct: 305 NHL 307
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 20/192 (10%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNL 137
+T + L+++++ L R F P L L + +NNL + ++L + L N L
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 138 TGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLR 197
T I SL + V S NL T+ I I V L+ N + G + +E+ L+
Sbjct: 178 THVDLSLIPSLFHANV----SYNLLSTLAIPIA-VEELDASHNSINVVRGPVNVELTILK 232
Query: 198 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
L N L+ T + + L E+DLS N+L ++ ++ L L + N L
Sbjct: 233 ------LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 258 ------GGPIPS 263
G PIP+
Sbjct: 285 VALNLYGQPIPT 296
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN---NLGGPIPSTLFRLTNIEYLSLGF 278
NLKEL LS N++ + P +++L L LS++ N NL G IPS + L L
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG-IPSAC-----LSRLFLDN 115
Query: 279 NRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG 338
N + +++LKNL LS+ NKL + LG L+ L++LDL N++ ++ L
Sbjct: 116 NELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLT-- 169
Query: 339 NFSALSYLDLSDNR 352
++++DL+ +
Sbjct: 170 RLKKVNWIDLTGQK 183
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 178 LSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS--LRNLKELDLSSNKLGG 235
L+ N + ++ +L+ LQ L L N L + + + +L+ LD+S N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 236 -VLPQEIENLKSLTALSMDANNLGGPIPSTLFRL--TNIEYLSLGFNRFNGSIPREIVNL 292
+ +S+ L++ +N L G ++FR ++ L L NR SIP+++ +L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTG----SVFRCLPPKVKVLDLHNNRI-MSIPKDVTHL 472
Query: 293 KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIP 334
+ L L++ N+L RLTSLQ + L N + P
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 106 LDLGSNNLSGSI----PSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
L+L SN L+GS+ P ++ L NN +IPK++ L+ L+ L++ SN L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLD-------LHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL-QWLDLSSNKLSGTIPKEIGSL 220
+ +L+ + L N T P +R L +W+ NK SG + GS+
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWI----NKHSGVVRNSAGSV 537
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 133 YENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
Y N +PK++ + L L N+++ +I + L L L N++
Sbjct: 38 YSNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP--QEIENLKSLTAL 250
++L++LD+S N+L + SLR+ LDLS N VLP +E NL LT L
Sbjct: 96 FLFNQDLEYLDVSHNRLQNISCCPMASLRH---LDLSFNDF-DVLPVCKEFGNLTKLTFL 151
Query: 251 SMDA 254
+ A
Sbjct: 152 GLSA 155
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
LQ L++ SN L D L++L YI+L++N T P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 165 IPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK 224
P + + +L+ ++D L +P + L+ L L+ N L +P I SL L+
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLR 153
Query: 225 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284
EL + + P+ E + L + + G L N++ L L + S
Sbjct: 154 ELSIRA------CPELTELPEPLASTDASGEHQG---------LVNLQSLRLEWTGIR-S 197
Query: 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALS 344
+P I NL+NL SL + + L+ P+ + L L+ LDL + P + G + L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 345 YLDLSD 350
L L D
Sbjct: 257 RLILKD 262
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 37/236 (15%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNL 175
P Q LS+L + + L +P LE L L N L +P I S+ L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 176 ETLSLDGNKLSGTIPI---------EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
LS+ +P E + L NLQ L L + ++P I +L+NLK L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIP 286
+ ++ L + P I +L L L + T R Y + F G P
Sbjct: 212 KIRNSPLSALGP-AIHHLPKLEELDLRG--------CTALR----NYPPI----FGGRAP 254
Query: 287 REIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 342
+ + LK+ ++L LT +P + RLT L+ LDL S +P +I A
Sbjct: 255 LKRLILKDCSNL------LT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL-GSNN 160
NLQ L L + S+P+ I +L NL + + + L+ P I L LE LDL G
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTA 241
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204
L PI G L+ L L T+P++I L L+ LDL
Sbjct: 242 LRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 44 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 95
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 96 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ NNL +P+ L L N++ L L N +IP+ L L GN
Sbjct: 153 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 206
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
NL+ L ++ GT+P+ L LDLS N+L ++P +L L LD+S N+L
Sbjct: 62 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-L 292
+ + L L L + N L P L +E LSL N +P ++N L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 172
Query: 293 KNLTSLSLGGNKL 305
+NL +L L N L
Sbjct: 173 ENLDTLLLQENSL 185
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 57 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 111
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 112 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 169 LNGLENLDTLLLQENSLY-TIPK 190
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 240 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 299
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 6 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 62
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 63 LDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 116
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ NNL +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
NL+ L ++ GT+P+ L LDLS N+L ++P +L L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-L 292
+ + L L L + N L P L +E LSL N +P ++N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
Query: 293 KNLTSLSLGGNKL 305
+NL +L L N L
Sbjct: 172 ENLDTLLLQENSL 184
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ ANN +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Query: 185 LSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENL 244
L+ +P + NL +L+ ++ GT+P L LDLS N+L LP + L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTL 99
Query: 245 KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 304
+LT L + N L L L ++ L L N P + L LSL N+
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 305 LTGHIPSTLGRLTSLQILDLSSNQLHS 331
LT L L +L L L N L++
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ ANN +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 198 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 318 SLQILDLSSNQLHS 331
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ ANN +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 198 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 318 SLQILDLSSNQLHS 331
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ NNL +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
NL+ L ++ GT+P+ L LDLS N+L ++P +L L LD+S N+L
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-L 292
+ + L L L + N L P L +E LSL N +P ++N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
Query: 293 KNLTSLSLGGNKL 305
+NL +L L N L
Sbjct: 172 ENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 240 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 299
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ ANN +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 198 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 318 SLQILDLSSNQLHS 331
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ NNL +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
NL+ L ++ GT+P+ L LDLS N+L ++P +L L LD+S N+L
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-L 292
+ + L L L + N L P L +E LSL N +P ++N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
Query: 293 KNLTSLSLGGNKL 305
+NL +L L N L
Sbjct: 172 ENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 240 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 299
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ NNL +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233
NL+ L ++ GT+P+ L LDLS N+L ++P +L L LD+S N+L
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-L 292
+ + L L L + N L P L +E LSL N +P ++N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
Query: 293 KNLTSLSLGGNKL 305
+NL +L L N L
Sbjct: 172 ENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 240 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 299
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNK---LGGVLP-QEIENLKSLTALSMDANNLG 258
+LS N++SG + NLK L+LS NK L + P +++ENLKSL + + NL
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 134
Query: 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIP 286
+ L + YL G++R N P
Sbjct: 135 AYRENVFKLLPQVMYLD-GYDRDNKEAP 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L ++P+
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEIENLKSLT 248
++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P + L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 249 ALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
LS+ ANN +P+ L L N++ L L N +IP+ L L GN
Sbjct: 152 KLSL-ANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
Query: 193 IESLRNLQWLDLSSNKLSGTIPK 215
+ L NL L L N L TIPK
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 356
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLR 149
E+ F+ +Q L +G N + P ++ LT + L N+L+ ++P+ I +
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL 209
L L + +NNL + +L+ L L N+L+ +++ + +L ++S N L
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL 204
Query: 210 SG-TIPKEIGSLRNLKELDLSSNKLGGVL-PQEIENLKSLTALSMDANNLGGPIPSTLFR 267
S IP + +ELD S N + V P +E LT L + NNL + L
Sbjct: 205 STLAIPIAV------EELDASHNSINVVRGPVNVE----LTILKLQHNNLTD--TAWLLN 252
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSS 326
+ + L +N + V ++ L L + N+L + G+ + +L++LDLS
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSH 310
Query: 327 NQL 329
N L
Sbjct: 311 NHL 313
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 109/292 (37%), Gaps = 51/292 (17%)
Query: 90 GELGRLNFSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSL 148
EL +FS +LQ+L + I + LS+L + L N L
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 149 RNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNK 208
NLEVL L NL+G + LSG + L +L+ L L N
Sbjct: 103 ANLEVLTLTQCNLDGAV-------------------LSGNF---FKPLTSLEMLVLRDNN 140
Query: 209 LSGTIPKEIG-SLRNLKELDLSSNKLGGVLPQEIEN----------LKSLTALSMDANNL 257
+ P ++R LDL+ NK+ + +++ N L S+T M+ L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200
Query: 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV--------------NLKNLTSLSLGGN 303
G F+ T+I L L N F S+ + N N+ S S G
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHT 259
Query: 304 KLTGHIPSTLGRLTS--LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
T L + ++ DLS +++ + + V +F+ L L L+ N I
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262
DLS +K+ + +L++L L+ N++ + L L L++D N L +P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VP 339
Query: 263 STLF-RLTNIEYLSLGFNRFNGSIPR 287
+F RLT+++ + L N ++ S PR
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCPR 365
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 44/276 (15%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ--IDSLSNLTYIYLYENNLTGTIPKEIG-SLRNLEV 153
F+ NL+ L L NL G++ S L++L + L +NN+ P ++R V
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS----GTIPIEIESLRNLQW-------- 201
LDL N ++ S+ + L+ G + +I ++ + L W
Sbjct: 159 LDLTFN--------KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 202 ------LDLSSNKLSGTIPKEIGSL---RNLKELDLSSN-----KLGGVLPQEIENL--K 245
LDLS N ++ K ++ L LS++ G ++ +N K
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 246 SLTALSMDANNLGGP-----IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300
L A + +L + S T++E L+L N N L +L L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL 330
Query: 301 GGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
N+L RLTSLQ + L +N S P +
Sbjct: 331 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 366
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG 234
++T L +K+ + +L+ L L+ N+++ L +LKEL L +N+L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 235 GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280
V + L SL + + N P I+YLS N+
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 375
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 2/189 (1%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
I G +++L L NK++ ++ + NLQ L L S++++ SL +L+ L
Sbjct: 20 IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79
Query: 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSI 285
DLS N L + L SL L++ N ++LF LTN++ L +G I
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Query: 286 PR-EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALS 344
R + L +L L + L + +L + + L L ++ + + S++
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 345 YLDLSDNRI 353
YL+L D +
Sbjct: 200 YLELRDTNL 208
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 8/244 (3%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL N ++ + + +NL + L + + SL +LE LDL N+L+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGT-IPIEIESLRNLQWLDLSSNKLSGTIPK-EIGSL 220
G + +L+ L+L GN + +L NLQ L + + + I + + L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL---G 277
+L EL++ + L Q +++++ + L++ + + L+++ YL L
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 278 FNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
RF S +P + V+ + L+ G+ LT + L +L IL+LS +
Sbjct: 208 LARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNG 265
Query: 337 IGNF 340
+G+F
Sbjct: 266 LGDF 269
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 2/186 (1%)
Query: 170 GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
G +++L L NK++ ++ + NLQ L L S++++ SL +L+ LDLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPR- 287
N L + L SL L++ N ++LF LTN++ L +G I R
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 168
Query: 288 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLD 347
+ L +L L + L + +L + + L L ++ + + S++ YL+
Sbjct: 169 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 228
Query: 348 LSDNRI 353
L D +
Sbjct: 229 LRDTNL 234
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 8/244 (3%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL N ++ + + +NL + L + + SL +LE LDL N+L+
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGT-IPIEIESLRNLQWLDLSSNKLSGTIPK-EIGSL 220
G + +L+ L+L GN + +L NLQ L + + + I + + L
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 173
Query: 221 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL---G 277
+L EL++ + L Q +++++ + L++ + + L+++ YL L
Sbjct: 174 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 233
Query: 278 FNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
RF S +P + V+ + L+ G+ LT + L +L IL+LS +
Sbjct: 234 LARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLR-YILELSEVEFDDCTLNG 291
Query: 337 IGNF 340
+G+F
Sbjct: 292 LGDF 295
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 134 ENNLTGTIPKEIGS-LRNLEVLDLGSNNL------NGTIPIEIGSVRNLETLSLDGNKL- 185
EN+ +P L++LE LDL N + N G+ +L+TL L N L
Sbjct: 344 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK---GAWPSLQTLVLSQNHLR 400
Query: 186 ----SGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV---LP 238
+G I + +L+NL LD+S N +P ++ L+LSS + V +P
Sbjct: 401 SMQKTGEILL---TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 456
Query: 239 QEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSL 298
Q +E L + NNL +LF L ++ L + N+ ++P + L +
Sbjct: 457 QTLE------VLDVSNNNLDS---FSLF-LPRLQELYISRNKLK-TLPDASL-FPVLLVM 504
Query: 299 SLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
+ N+L RLTSLQ + L +N S P +
Sbjct: 505 KIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 542
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNL 151
L +FS F LQ+LDL + L +L+ + L N + P L +L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 152 EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKLS 210
E L L IG + L+ L++ N + S +P +L NL +DLS N +
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Query: 211 GTIPKEIGSLRNLKE----LDLSSNKLGGVLPQEIENLK 245
++ LR + LD+S N + + Q + +K
Sbjct: 162 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 200
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 29/206 (14%)
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLS--- 229
L++L+L NK G+I + +L +L +LDLS N LS G +L+ LDLS
Sbjct: 325 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 382
Query: 230 -----SNKLGGVLPQEIE----------------NLKSLTALSMDANNLGGPIPSTLFRL 268
+N +G Q ++ +L+ L L + N L
Sbjct: 383 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 442
Query: 269 TNIEYLSLGFNRF-NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
T++ L + N F + ++ N NLT L L +L L LQ+L++S N
Sbjct: 443 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 502
Query: 328 QLHSSIPLVIGNFSALSYLDLSDNRI 353
L +LS LD S NRI
Sbjct: 503 NLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 4/155 (2%)
Query: 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 267
KLS +P +I S + K +DLS N L + N L L + +
Sbjct: 17 KLSK-VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 73
Query: 268 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
L ++ L L N P L +L +L KL +G+L +L+ L+++ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 328 QLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
+HS +P N + L ++DLS N I I ++L
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 168
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 165 IPIEI-GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 223
+P +I S +N++ L N L + LQWLDLS ++ K L +L
Sbjct: 21 VPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 224 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 283
L L+ N + P L SL L L + +L ++ L++ N +
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 284 -SIPREIVNLKNLTSLSLGGNKL 305
+P NL NL + L N +
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYI 160
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTI--PKEIGSLRNLEVLDLGS 158
P+L YLDL N LS S L + +L + + G I L L+ LD
Sbjct: 345 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 159 NNLNGTIPIEIGSVRNLETL-SLDGNKLSGTIPIE--IESLRNLQWLDLSSNKLS-GTIP 214
+ L E + +LE L LD + + I + L +L L ++ N T+
Sbjct: 404 STLKRVT--EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 461
Query: 215 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYL 274
+ NL LDLS +L + + L L L+M NNL S +L ++ L
Sbjct: 462 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 521
Query: 275 SLGFNRFNGS 284
FNR S
Sbjct: 522 DCSFNRIETS 531
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNL 151
L +FS F LQ+LDL + L +L+ + L N + P L +L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 152 EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGTIPIEIESLRNLQWLDLSSNKLS 210
E L L IG + L+ L++ N + S +P +L NL +DLS N +
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 211 GTIPKEIGSLRNLKE----LDLSSNKLGGVLPQEIENLK 245
++ LR + LD+S N + + Q + +K
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 29/206 (14%)
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLS--- 229
L++L+L NK G+I + +L +L +LDLS N LS G +L+ LDLS
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 230 -----SNKLGGVLPQEIE----------------NLKSLTALSMDANNLGGPIPSTLFRL 268
+N +G Q ++ +L+ L L + N L
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 269 TNIEYLSLGFNRF-NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
T++ L + N F + ++ N NLT L L +L L LQ+L++S N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Query: 328 QLHSSIPLVIGNFSALSYLDLSDNRI 353
L +LS LD S NRI
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 213 IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIE 272
+P +I S + K +DLS N L + N L L + + L ++
Sbjct: 26 VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 273 YLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS- 331
L L N P L +L +L KL +G+L +L+ L+++ N +HS
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 332 SIPLVIGNFSALSYLDLSDNRICGIIPDEL 361
+P N + L ++DLS N I I ++L
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 165 IPIEI-GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 223
+P +I S +N++ L N L + LQWLDLS ++ K L +L
Sbjct: 26 VPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 224 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 283
L L+ N + P L SL L L + +L ++ L++ N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 284 -SIPREIVNLKNLTSLSLGGNKL 305
+P NL NL + L N +
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYI 165
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTI--PKEIGSLRNLEVLDLGS 158
P+L YLDL N LS S L + +L + + G I L L+ LD
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 159 NNLNGTIPIEIGSVRNLETL-SLDGNKLSGTIPIE--IESLRNLQWLDLSSNKLS-GTIP 214
+ L E + +LE L LD + + I + L +L L ++ N T+
Sbjct: 409 STLKRVT--EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 215 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYL 274
+ NL LDLS +L + + L L L+M NNL S +L ++ L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
Query: 275 SLGFNRFNGS 284
FNR S
Sbjct: 527 DCSFNRIETS 536
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 435 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 487
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 266
Query: 488 QKIVQDIILVSTIAFACLSSQPKSRPTMQRI 518
+ + ++A CL + RP ++++
Sbjct: 267 DADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 36/179 (20%)
Query: 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGS-----IPSQIDSLSNLTYIY 131
R+ + GL +N K G + +L+ LDLGSN L + P + S L ++
Sbjct: 201 RLENCGLTPANCKDLCGIVASQ--ASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLW 258
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGT-IP 190
L+E ++T + +++ + + + L+ LSL GNKL
Sbjct: 259 LWECDITASGCRDLCRV--------------------LQAKETLKELSLAGNKLGDEGAR 298
Query: 191 IEIESL----RNLQWLDLSSNKLSGTIPKEIGSL----RNLKELDLSSNKLGGVLPQEI 241
+ ESL L+ L + S L+ + + + ++L EL LSSNKLG QE+
Sbjct: 299 LLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQEL 357
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 435 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 487
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 266
Query: 488 QKIVQDIILVSTIAFACLSSQPKSRPTMQRIS 519
+ + ++A CL + RP ++++
Sbjct: 267 DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 298
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 435 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 487
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 205 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 260
Query: 488 QKIVQDIILVSTIAFACLSSQPKSRPTMQRIS 519
+ + ++A CL + RP ++++
Sbjct: 261 DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 292
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 49/223 (21%)
Query: 193 IESLRNLQW----LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 248
+ SLR W LDLS N LS ++ L+ L+LSSN L L ++E+L +L
Sbjct: 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLR 83
Query: 249 ALSMDANN----LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 304
L ++ N L GP TL N +R + S + N + L NK
Sbjct: 84 TLDLNNNYVQELLVGPSIETLHAANN------NISRVSCSRGQGKKN------IYLANNK 131
Query: 305 LTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDELTX 363
+T G + +Q LDL N++ + + + + L +L+L N I +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------- 184
Query: 364 XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIP 406
GQ+ FA L +LDLS NKL+ P
Sbjct: 185 --------------KGQVVFA-----KLKTLDLSSNKLAFMGP 208
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
P+++ L +NN+S S+ N IYL N +T + G ++ LDL N
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 161 LNGTIPIEIGS-----------------------VRNLETLSLDGNKLSGTIPIEIESLR 197
++ E+ + L+TL L NKL+ P E +S
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214
Query: 198 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSN 231
+ W+ L +NKL I K + +NL+ DL N
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 171 SVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS 230
S N++ L L GN LS ++ L+ L+LSSN L T+ ++ SL L+ LDL++
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNN 89
Query: 231 NKLGGVL 237
N + +L
Sbjct: 90 NYVQELL 96
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 294 NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
N+ L L GN L+ + L T L++L+LSSN L+ ++ L + S L LDL++N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV 92
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 195 SLRNLQW----LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 250
SLR W LDLS N LS ++ L+ L+LSSN L L ++E+L +L L
Sbjct: 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTL 85
Query: 251 SMDANN----LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLT 306
++ N L GP TL N +R + S + N + L NK+T
Sbjct: 86 DLNNNYVQELLVGPSIETLHAANN------NISRVSCSRGQGKKN------IYLANNKIT 133
Query: 307 GHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDELTXXX 365
G + +Q LDL N++ + + + + L +L+L N I +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--------- 184
Query: 366 XXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLS 402
GQ+ FA L +LDLS NKL+
Sbjct: 185 ------------KGQVVFA-----KLKTLDLSSNKLA 204
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 39/146 (26%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLS----GSIPSQIDSLS--NLTYIYLYENNLTGTIPKEI 145
L L+ C +QYLDL N + + + D+L NL Y ++Y
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------------ 182
Query: 146 GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205
++ G + L+TL L NKL+ P E +S + W+ L
Sbjct: 183 --------------DVKGQVVFA-----KLKTLDLSSNKLAFMGP-EFQSAAGVTWISLR 222
Query: 206 SNKLSGTIPKEIGSLRNLKELDLSSN 231
+NKL I K + +NL+ DL N
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGN 247
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T + L L N+ P +L LT L+L N+LT +LT L L L NQ
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 329 LHSSIPL-VIGNFSALSYLDLSDN 351
L SIP+ V N +L+++ L +N
Sbjct: 100 L-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 226 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGS 284
L L N++ + P ++L LT L++ N L +P +F +LT + +L+L N+ S
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLK-S 102
Query: 285 IPREIV-NLKNLTSLSLGGN 303
IP + NLK+LT + L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 176 ETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235
+ L L N+++ P +SL L +L+L+ N+L+ L L L L N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 236 VLPQEIENLKSLTALSMDAN 255
+ +NLKSLT + + N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
Q L L N ++ P DSL+ LTY+ L N LT L L L L N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 164 TIPIEIGSVRNLETLS 179
I +G NL++L+
Sbjct: 103 ---IPMGVFDNLKSLT 115
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQ--WL 202
L LSL+ N+L ++LR+L WL
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 17 SGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 73
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 303
F +LT + LSL N+ SIPR NL++LT + L N
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNN 112
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 298 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+ G + L L N+++ P + L L LDL +N+L+ L L +L
Sbjct: 24 VPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83
Query: 227 DLSSNKLGGVLPQEIENLKSLTAL 250
L+ N+L + +NL+SLT +
Sbjct: 84 SLNDNQLKSIPRGAFDNLRSLTHI 107
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T + L L NR P L LT L L N+LT +LT L L L+ NQ
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 329 LHSSIPLVIGNFSALSYLDLSDN 351
L S N +L+++ L +N
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV 236
T+ G L+ ++P I + Q L L N+++ P L L LDL +N+L V
Sbjct: 13 TVDCSGKSLA-SVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL-TV 68
Query: 237 LPQEI-ENLKSLTALSMDANNLGGPIPSTLF 266
LP + + L LT LS++ N L IP F
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAF 98
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 435 VTEKCDVYSFGVVALEILMGR 455
+TEK DVYSFGVV E+L R
Sbjct: 218 LTEKSDVYSFGVVLFEVLCAR 238
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 435 VTEKCDVYSFGVVALEILMGR 455
+TEK DVYSFGVV E+L R
Sbjct: 218 LTEKSDVYSFGVVLFEVLCAR 238
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 17 SGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 73
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 303
F +LT + LSL N+ SIPR NLK+LT + L N
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+ G + L L N+++ P + L L LDL +N+L+ L L +L
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83
Query: 227 DLSSNKLGGVLPQEIENLKSLT 248
L+ N+L + +NLKSLT
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLT 105
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 298 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQ--WL 202
L LSL+ N+L ++L++L WL
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T + L L N+ P L LT L L N+LT +LT L L L+ NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 329 LHSSIPLVIGNFSALSYLDLSDN 351
L S N +L+++ L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV 236
T+ G L+ ++P I + Q L L N+++ P L L LDL +N+L V
Sbjct: 13 TVDCSGKSLA-SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TV 68
Query: 237 LPQEI-ENLKSLTALSMDANNLGGPIPSTLF 266
LP + + L LT LS++ N L IP F
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAF 98
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 430 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 488
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 489 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 518
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 265
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 25 SGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 81
Query: 266 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 303
F +LT + LSL N+ SIPR NLK+LT + L N
Sbjct: 82 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 167 IEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226
+ G + L L N+++ P + L L LDL +N+L+ L L +L
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 91
Query: 227 DLSSNKLGGVLPQEIENLKSLT 248
L+ N+L + +NLKSLT
Sbjct: 92 SLNDNQLKSIPRGAFDNLKSLT 113
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 298 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 175 LETLSLDGNKLSGTIPIEIESLRNLQ--WL 202
L LSL+ N+L ++L++L WL
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 269 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328
T + L L N+ P L LT L L N+LT +LT L L L+ NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 329 LHSSIPLVIGNFSALSYLDLSDN 351
L S N +L+++ L +N
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV 236
T+ G L+ ++P I + Q L L N+++ P L L LDL +N+L V
Sbjct: 21 TVDCSGKSLA-SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TV 76
Query: 237 LPQEI-ENLKSLTALSMDANNLGGPIPSTLF 266
LP + + L LT LS++ N L IP F
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAF 106
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 435 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 487
+T K D+YSFGVV LEI+ G R P + + + +D++ N
Sbjct: 202 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK----XN 257
Query: 488 QKIVQDIILVSTIAFACLSSQPKSRPTMQRI 518
+ ++A CL + RP ++++
Sbjct: 258 DADSTSVEAXYSVASQCLHEKKNKRPDIKKV 288
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 430 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 488
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 489 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 518
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 430 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 488
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 489 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 518
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 252
+ L L+ ++ S+NK++ + E+ L+SN+L V + + L+SL L +
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 253 DANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 303
+N + + L+++ LSL N+ P L +L++L+L N
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
Query: 135 NNLTGTIPKEIGSLR--NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIE 192
N + IP+ LR N E L + + +P L ++ NK++
Sbjct: 24 NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLP-------QLRKINFSNNKITDIEEGA 76
Query: 193 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 252
E + + L+SN+L K L +LK L L SN++ V L S+ LS+
Sbjct: 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136
Query: 253 DANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282
N + P L ++ L+L N FN
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 183 NKLSGTIPIEIESLR--NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQE 240
NK+ IP LR N ++ L + + +P+ L++++ S+NK+ +
Sbjct: 24 NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ-------LRKINFSNNKITDIEEGA 76
Query: 241 IENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 299
E + + + +N L + +F+ L +++ L L NR + L ++ LS
Sbjct: 77 FEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135
Query: 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336
L N++T P L SL L+L +N + + L
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172
>pdb|2PN1|A Chain A, Crystal Structure Of Carbamoylphosphate Synthase Large
Subunit (Split Gene In Mj) (Zp_00538348.1) From
Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 331
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI---ESLRNLQWLDLSSNKLSGTIPKEIG 218
NG+ IE+ V +E + +K + I E+ + L ++DL S K++ KE
Sbjct: 158 NGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKL 217
Query: 219 SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGF 278
+ R E D S + L + + +E++ +D + L GP+ LF + YLS
Sbjct: 218 TXRA-GETDKSRSVLRDDVFELVEHV-------LDGSGLVGPLDFDLFDVAGTLYLSEIN 269
Query: 279 NRFNGSIPR 287
RF G P
Sbjct: 270 PRFGGGYPH 278
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 436 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 492
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 363 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 412
Query: 493 DIILVSTIAFACLSSQPKSRPTMQRIS 519
++ I C ++P+ RPT + I
Sbjct: 413 ELY---NIMMRCWKNRPEERPTFEYIQ 436
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 436 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 492
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 347 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 396
Query: 493 DIILVSTIAFACLSSQPKSRPTMQRIS 519
++ I C ++P+ RPT + I
Sbjct: 397 ELY---NIMMRCWKNRPEERPTFEYIQ 420
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 436 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 492
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 190 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 239
Query: 493 DIILVSTIAFACLSSQPKSRPTMQRIS 519
++ I C ++P+ RPT + I
Sbjct: 240 ELY---NIMMRCWKNRPEERPTFEYIQ 263
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 438 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 497
K D++SFG+ A+E+ G P K++++ + + PP + VQD ++
Sbjct: 207 KADIWSFGITAIELATGAAPYHKYPPM------KVLMLTLQN---DPPSLETGVQDKEML 257
Query: 498 STIAFA-------CLSSQPKSRPT 514
+ CL P+ RPT
Sbjct: 258 KKYGKSFRKMISLCLQKDPEKRPT 281
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 295 LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
+T LSL G +G +P +G+LT L++L L S+
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 438 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 497
K D++SFG+ A+E+ G P K++++ + + PP + VQD ++
Sbjct: 202 KADIWSFGITAIELATGAAPYHKYPPM------KVLMLTLQN---DPPSLETGVQDKEML 252
Query: 498 STIAFA-------CLSSQPKSRPT 514
+ CL P+ RPT
Sbjct: 253 KKYGKSFRKMISLCLQKDPEKRPT 276
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 188 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
+IP +L++ W L NKL GT+ EI + K LDL
Sbjct: 9 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLE 50
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
SIP ++L + + L EN L GT+ EI + ++LDL
Sbjct: 9 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDL 49
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 188 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 229
+IP +L++ W L NKL GT+ EI + K LDL
Sbjct: 7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLE 48
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
SIP ++L + + L EN L GT+ EI + ++LDL
Sbjct: 7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDL 47
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 37/142 (26%)
Query: 199 LQWLDLSSNKLSG--TIPKEIGSL--------------RNLKELDLSSNKLGG--VLPQE 240
LQ L +S N+L+ T+P E+ L LKEL +S N+L VLP E
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE 242
Query: 241 IENL----KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLT 296
++ L LT+L M +PS L L S+ N+ +P +++L + T
Sbjct: 243 LKELMVSGNRLTSLPM--------LPSGLLSL------SVYRNQLT-RLPESLIHLSSET 287
Query: 297 SLSLGGNKLTGHIPSTLGRLTS 318
+++L GN L+ L +TS
Sbjct: 288 TVNLEGNPLSERTLQALREITS 309
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 438 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 497
K D++S G+ A+E+ G P M + L + SPP + Q
Sbjct: 196 KADIWSLGITAIELAKGEPPNSDLHP---------MRVLFLIPKNSPPTLEG--QHSKPF 244
Query: 498 STIAFACLSSQPKSRPTMQRI 518
ACL+ P+ RPT + +
Sbjct: 245 KEFVEACLNKDPRFRPTAKEL 265
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 290 VNLKN---LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327
V+L N +T LSL G G +P +G+LT L++L ++
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 87/231 (37%), Gaps = 44/231 (19%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNL 151
+ L+ S NL YL SN L+ + L+ LTY+ N LT ++ L
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLL 129
Query: 152 EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG 211
L+ N L EI N + LD + +++ L LD S NK++
Sbjct: 130 TYLNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT- 183
Query: 212 TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNI 271
ELD+S NKL L L+ D NN+ + +LT
Sbjct: 184 -------------ELDVSQNKL-------------LNRLNCDTNNITKLDLNQNIQLT-- 215
Query: 272 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQIL 322
+L N+ ++ L LT N LT STL +LT+L +
Sbjct: 216 -FLDCSSNKL---TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 436 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIV---- 491
+EK DV+ +GV+ LE++ G+ + +ML++ + L + +V
Sbjct: 213 SEKTDVFGYGVMLLELITGQRAFDLARLANDD---DVMLLDWVKGLLKEKKLEALVDVDL 269
Query: 492 ------QDIILVSTIAFACLSSQPKSRPTMQRI 518
+++ + +A C S P RP M +
Sbjct: 270 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEV 302
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 436 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIV---- 491
+EK DV+ +GV+ LE++ G+ + +ML++ + L + +V
Sbjct: 221 SEKTDVFGYGVMLLELITGQRAFDLARLANDD---DVMLLDWVKGLLKEKKLEALVDVDL 277
Query: 492 ------QDIILVSTIAFACLSSQPKSRPTMQRI 518
+++ + +A C S P RP M +
Sbjct: 278 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEV 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,590,317
Number of Sequences: 62578
Number of extensions: 537367
Number of successful extensions: 3158
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1684
Number of HSP's gapped (non-prelim): 641
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)