Query 010041
Match_columns 519
No_of_seqs 561 out of 5518
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.2E-50 2.5E-54 433.0 32.1 419 32-460 9-558 (768)
2 4eco_A Uncharacterized protein 100.0 2.7E-47 9.4E-52 403.7 28.4 389 32-434 27-563 (636)
3 3rgz_A Protein brassinosteroid 100.0 4.2E-46 1.4E-50 403.5 27.9 378 78-458 271-722 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 2.5E-45 8.6E-50 395.1 32.0 393 31-433 265-802 (876)
5 3v47_A TOLL-like receptor 5B a 100.0 1.4E-40 4.8E-45 339.6 28.6 368 62-430 5-412 (455)
6 3vq2_A TLR4, TOLL-like recepto 100.0 8.8E-40 3E-44 345.9 31.5 145 76-221 32-177 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.3E-39 1.5E-43 340.6 33.1 350 76-427 33-463 (606)
8 4eco_A Uncharacterized protein 100.0 1.7E-40 5.7E-45 351.7 19.8 330 94-431 199-583 (636)
9 3t6q_A CD180 antigen; protein- 100.0 2.9E-38 1E-42 334.2 33.6 353 76-430 57-517 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 1.8E-38 6.2E-43 333.5 29.2 352 76-430 28-511 (570)
11 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-39 9.1E-44 312.6 19.9 288 32-352 3-302 (313)
12 3v47_A TOLL-like receptor 5B a 100.0 2.2E-38 7.5E-43 323.4 27.0 331 76-406 54-412 (455)
13 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-39 2.9E-43 334.4 24.2 360 65-431 4-491 (549)
14 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-38 1.3E-42 333.3 29.1 348 76-427 56-535 (606)
15 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-38 1.2E-42 344.9 27.4 289 65-355 14-376 (844)
16 4ecn_A Leucine-rich repeat pro 100.0 3.4E-38 1.2E-42 339.8 26.8 342 76-429 448-843 (876)
17 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-37 9.2E-42 331.2 33.4 350 76-426 25-443 (680)
18 2z7x_B TOLL-like receptor 1, v 100.0 1E-37 3.6E-42 323.8 28.5 339 76-427 21-458 (520)
19 2id5_A Lingo-1, leucine rich r 100.0 4E-37 1.4E-41 315.9 29.0 305 100-404 31-335 (477)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-37 2.4E-41 320.4 30.1 126 77-209 53-181 (562)
21 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-37 8.5E-42 338.2 26.9 353 76-430 48-543 (844)
22 2z63_A TOLL-like receptor 4, v 100.0 1.1E-36 3.7E-41 319.9 27.1 331 101-433 28-490 (570)
23 1ziw_A TOLL-like receptor 3; i 100.0 5E-36 1.7E-40 321.4 31.6 354 77-431 223-602 (680)
24 2id5_A Lingo-1, leucine rich r 100.0 1.5E-36 5E-41 311.7 25.7 301 126-426 33-333 (477)
25 3o6n_A APL1; leucine-rich repe 100.0 2.2E-35 7.4E-40 294.8 30.1 313 98-428 42-354 (390)
26 3oja_B Anopheles plasmodium-re 100.0 2E-35 7E-40 310.9 31.0 313 99-429 49-361 (597)
27 2z7x_B TOLL-like receptor 1, v 100.0 6.1E-36 2.1E-40 310.5 26.3 335 80-430 4-437 (520)
28 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-35 1.5E-39 311.6 32.1 351 77-428 53-582 (635)
29 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-36 2.2E-40 312.6 23.7 325 100-426 25-464 (549)
30 1o6v_A Internalin A; bacterial 100.0 9.7E-35 3.3E-39 296.9 31.5 307 97-427 64-389 (466)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-35 1.5E-39 306.6 28.5 333 79-426 34-486 (562)
32 4fmz_A Internalin; leucine ric 100.0 5.9E-34 2E-38 279.9 31.2 307 97-426 40-346 (347)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-33 7.3E-38 284.9 29.9 297 76-403 42-353 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-33 1.2E-37 283.3 27.2 302 96-427 37-353 (457)
35 4fmz_A Internalin; leucine ric 100.0 6.8E-33 2.3E-37 272.3 27.9 303 76-402 44-346 (347)
36 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-33 2.9E-37 294.0 30.2 332 101-432 52-561 (635)
37 1o6v_A Internalin A; bacterial 100.0 1.4E-32 4.6E-37 281.0 30.1 307 99-430 44-370 (466)
38 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-34 1.7E-38 275.7 16.2 248 125-375 50-301 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 5E-33 1.7E-37 277.7 23.2 310 77-405 46-355 (390)
40 3oja_B Anopheles plasmodium-re 100.0 7E-33 2.4E-37 291.6 23.6 308 78-404 53-360 (597)
41 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-32 2E-36 263.9 27.7 289 101-424 33-331 (332)
42 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-32 1.5E-36 264.6 26.6 275 100-400 53-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.9E-36 261.6 28.9 291 100-424 30-330 (330)
44 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4.1E-36 261.4 28.1 275 100-399 51-329 (330)
45 4fcg_A Uncharacterized protein 100.0 8.5E-33 2.9E-37 268.6 12.1 274 32-327 24-311 (328)
46 1jl5_A Outer protein YOPM; leu 100.0 7.5E-30 2.6E-34 258.6 30.1 284 101-427 111-410 (454)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-34 7.1E-39 294.5 -4.1 352 77-428 4-413 (461)
48 1jl5_A Outer protein YOPM; leu 100.0 8.8E-29 3E-33 250.7 28.7 306 76-431 111-434 (454)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-32 5.2E-37 280.6 -2.7 328 100-427 2-384 (461)
50 2z66_A Variable lymphocyte rec 100.0 4.3E-29 1.5E-33 240.6 20.5 281 104-411 10-296 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 3E-29 1E-33 246.7 19.2 256 101-381 52-317 (353)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.9E-34 244.7 15.6 252 65-332 7-263 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 5.7E-29 2E-33 244.8 20.1 280 124-430 30-318 (353)
54 4fcg_A Uncharacterized protein 100.0 8.2E-29 2.8E-33 240.5 19.6 236 123-378 79-314 (328)
55 3zyi_A Leucine-rich repeat-con 100.0 2.2E-27 7.6E-32 241.4 24.8 228 101-330 75-303 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 2.4E-28 8.3E-33 232.8 16.4 205 100-304 31-236 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 6.5E-28 2.2E-32 229.9 19.0 224 104-354 14-238 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 239.5 24.7 247 103-354 56-303 (452)
59 3zyj_A Leucine-rich repeat-con 100.0 6E-27 2E-31 237.3 25.6 246 103-353 45-291 (440)
60 3zyj_A Leucine-rich repeat-con 100.0 5.4E-27 1.8E-31 237.7 24.9 230 100-331 63-293 (440)
61 1wwl_A Monocyte differentiatio 100.0 3E-29 1E-33 242.2 4.9 251 98-379 40-310 (312)
62 1wwl_A Monocyte differentiatio 99.9 5.2E-29 1.8E-33 240.5 3.5 249 121-403 39-310 (312)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-28 9.4E-33 236.0 7.7 265 103-405 12-279 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-28 4.9E-33 238.0 4.7 248 97-358 30-280 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-25 7.1E-30 232.8 28.4 264 103-410 42-305 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-25 2.2E-29 229.2 28.3 263 125-431 40-302 (622)
67 2o6q_A Variable lymphocyte rec 99.9 1.6E-25 5.5E-30 211.4 21.1 216 62-281 2-217 (270)
68 3oja_A Leucine-rich immune mol 99.9 7E-27 2.4E-31 239.1 10.7 235 125-397 34-270 (487)
69 3oja_A Leucine-rich immune mol 99.9 9.8E-27 3.4E-31 238.0 11.5 238 98-349 31-270 (487)
70 3ogk_B Coronatine-insensitive 99.9 2E-27 6.8E-32 250.5 1.2 348 77-427 113-527 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.5E-29 205.3 21.0 147 101-247 28-175 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.6E-29 205.9 19.0 208 125-333 28-240 (276)
73 3rfs_A Internalin B, repeat mo 99.9 4.8E-24 1.6E-28 201.4 18.1 206 99-315 39-244 (272)
74 2o6q_A Variable lymphocyte rec 99.9 2.8E-23 9.5E-28 196.0 23.2 202 102-330 17-218 (270)
75 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.6E-28 198.4 18.6 207 76-294 41-247 (272)
76 3ogk_B Coronatine-insensitive 99.9 3.1E-26 1.1E-30 241.4 0.1 327 99-427 110-502 (592)
77 1p9a_G Platelet glycoprotein I 99.9 5.3E-23 1.8E-27 195.8 20.6 203 97-330 6-208 (290)
78 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4.3E-27 193.2 21.5 203 121-354 6-208 (290)
79 2ast_B S-phase kinase-associat 99.9 8.4E-25 2.9E-29 213.5 6.6 252 104-362 50-314 (336)
80 2ca6_A RAN GTPase-activating p 99.9 3.2E-25 1.1E-29 220.7 2.9 246 117-381 24-319 (386)
81 3goz_A Leucine-rich repeat-con 99.9 1.4E-24 4.8E-29 214.0 5.1 258 105-385 2-304 (362)
82 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.8E-29 212.0 4.6 256 126-411 48-315 (336)
83 2ca6_A RAN GTPase-activating p 99.9 6.2E-25 2.1E-29 218.7 1.8 257 140-427 23-317 (386)
84 3goz_A Leucine-rich repeat-con 99.9 2.2E-24 7.4E-29 212.7 5.0 228 130-377 3-265 (362)
85 4glp_A Monocyte differentiatio 99.9 6E-23 2E-27 197.9 14.4 204 125-355 91-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.7E-27 187.2 17.9 192 63-260 3-194 (251)
87 2p1m_B Transport inhibitor res 99.9 6.2E-25 2.1E-29 231.6 -0.8 205 220-426 288-519 (594)
88 2xwt_C Thyrotropin receptor; s 99.9 3E-22 1E-26 185.4 15.9 151 102-255 32-189 (239)
89 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.3E-27 195.6 13.5 230 125-379 64-308 (310)
90 2xwt_C Thyrotropin receptor; s 99.9 3.1E-22 1.1E-26 185.2 15.1 198 125-328 31-237 (239)
91 2o6s_A Variable lymphocyte rec 99.9 8.3E-22 2.8E-26 178.3 17.3 185 64-270 6-190 (208)
92 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 181.6 19.0 179 102-283 15-193 (251)
93 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.5E-26 186.9 17.5 193 99-331 39-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.2E-21 7.6E-26 186.4 17.1 193 123-355 39-231 (308)
95 2p1m_B Transport inhibitor res 99.9 8.8E-24 3E-28 222.7 -0.1 329 98-428 102-496 (594)
96 2o6s_A Variable lymphocyte rec 99.8 2.4E-20 8.1E-25 168.6 16.5 181 104-294 10-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.2E-24 176.5 18.5 134 101-234 30-167 (350)
98 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.8E-24 187.3 17.5 148 62-234 40-193 (571)
99 3cvr_A Invasion plasmid antige 99.8 8.5E-20 2.9E-24 188.2 16.4 186 126-339 60-252 (571)
100 4ay9_X Follicle-stimulating ho 99.8 2.8E-19 9.7E-24 175.1 18.7 198 104-306 12-215 (350)
101 3e6j_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 160.9 17.6 161 61-237 15-175 (229)
102 1m9s_A Internalin B; cell inva 99.8 5.7E-19 1.9E-23 184.1 15.6 148 99-258 41-188 (605)
103 2v9t_B SLIT homolog 2 protein 99.8 1.5E-18 5E-23 158.0 16.1 135 101-235 32-166 (220)
104 1h6t_A Internalin B; cell adhe 99.8 7.8E-19 2.7E-23 167.1 14.4 170 123-306 44-213 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6E-23 157.5 16.0 135 101-235 32-167 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.1E-23 165.2 16.1 173 97-283 42-214 (291)
107 4ezg_A Putative uncharacterize 99.8 1.9E-18 6.4E-23 154.6 13.7 155 98-259 41-195 (197)
108 1m9s_A Internalin B; cell inva 99.8 2.8E-18 9.6E-23 178.9 17.1 174 76-264 43-216 (605)
109 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 155.2 17.0 153 104-260 22-174 (229)
110 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.1E-23 170.1 14.3 158 101-258 39-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.8 6.2E-18 2.1E-22 153.9 16.4 152 104-258 14-165 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-18 2E-22 154.1 15.8 154 104-260 14-168 (220)
113 2xot_A Amphoterin-induced prot 99.8 4.2E-18 1.4E-22 167.4 15.4 176 105-283 22-203 (361)
114 4ezg_A Putative uncharacterize 99.7 5E-18 1.7E-22 151.8 11.9 132 122-258 41-172 (197)
115 4b8c_D Glucose-repressible alc 99.7 1.8E-18 6E-23 184.9 6.6 226 63-306 161-404 (727)
116 1dce_A Protein (RAB geranylger 99.7 7.8E-20 2.7E-24 189.5 -4.9 216 171-420 347-567 (567)
117 4b8c_D Glucose-repressible alc 99.7 2.3E-18 7.9E-23 184.0 5.6 218 101-330 173-404 (727)
118 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.4E-22 156.2 9.0 167 102-307 20-186 (263)
119 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.6E-24 187.7 -5.1 204 98-324 346-567 (567)
120 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.8E-22 154.1 9.4 170 124-332 18-187 (263)
121 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7.1E-21 140.5 13.3 109 102-210 30-139 (192)
122 3sb4_A Hypothetical leucine ri 99.7 5.1E-17 1.7E-21 157.6 10.0 123 100-230 24-157 (329)
123 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.6E-21 138.6 10.6 132 125-258 24-160 (168)
124 2ell_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 136.3 12.2 135 99-235 22-161 (168)
125 2je0_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 137.0 7.5 127 125-253 17-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.7 2E-16 6.8E-21 134.6 9.8 129 99-229 15-148 (149)
127 1w8a_A SLIT protein; signaling 99.7 5.6E-16 1.9E-20 137.8 13.0 131 104-237 11-142 (192)
128 3sb4_A Hypothetical leucine ri 99.6 3.5E-16 1.2E-20 151.7 10.8 264 100-395 48-327 (329)
129 2o6r_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 131.4 13.3 112 101-212 28-139 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 132.0 13.9 107 126-233 32-138 (193)
131 2o6r_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 129.0 14.3 114 125-238 28-141 (177)
132 4fdw_A Leucine rich hypothetic 99.6 1E-13 3.4E-18 137.4 23.5 264 125-401 113-382 (401)
133 2wfh_A SLIT homolog 2 protein 99.6 9.4E-15 3.2E-19 129.8 13.8 127 128-258 13-139 (193)
134 4fdw_A Leucine rich hypothetic 99.6 1.2E-13 4.1E-18 136.9 23.0 266 147-425 111-382 (401)
135 4fs7_A Uncharacterized protein 99.6 3.4E-13 1.2E-17 134.0 23.9 315 92-423 62-376 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 126.3 10.0 131 121-257 15-152 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.9E-19 127.4 8.4 136 94-234 12-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 6.3E-17 2.2E-21 144.8 -6.8 134 100-238 17-157 (198)
139 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.9E-21 143.1 -7.4 137 120-261 13-156 (198)
140 4fs7_A Uncharacterized protein 99.5 5.3E-12 1.8E-16 125.4 23.3 322 77-418 72-393 (394)
141 3g39_A Variable lymphocyte rec 99.4 5.4E-13 1.9E-17 115.8 11.8 86 125-210 30-115 (170)
142 3g39_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 114.1 12.8 108 127-237 11-118 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 114.4 11.8 103 105-210 16-118 (174)
144 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 113.2 12.5 106 128-236 15-120 (174)
145 4gt6_A Cell surface protein; l 99.4 9E-11 3.1E-15 116.5 25.8 319 92-424 54-389 (394)
146 3un9_A NLR family member X1; l 99.3 9.3E-14 3.2E-18 136.3 -3.7 160 100-259 71-253 (372)
147 3un9_A NLR family member X1; l 99.2 4.2E-13 1.4E-17 131.6 -2.1 143 269-411 101-261 (372)
148 4gt6_A Cell surface protein; l 99.2 3.1E-09 1.1E-13 105.4 25.4 298 116-425 54-369 (394)
149 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 117.1 10.8 89 97-186 27-116 (347)
150 2ifg_A High affinity nerve gro 99.2 6.9E-11 2.4E-15 115.2 11.6 104 105-211 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 4.2E-08 1.4E-12 96.6 24.4 105 289-396 236-340 (379)
152 4h09_A Hypothetical leucine ri 99.0 7.5E-08 2.6E-12 94.8 25.3 298 77-389 47-356 (379)
153 2ra8_A Uncharacterized protein 98.9 3.6E-10 1.2E-14 109.8 4.7 82 121-205 135-227 (362)
154 2ra8_A Uncharacterized protein 98.9 3.4E-09 1.2E-13 103.0 8.9 142 285-429 164-323 (362)
155 4gt4_A Tyrosine-protein kinase 98.8 2.3E-10 7.7E-15 108.8 -1.7 84 425-519 214-298 (308)
156 4aoj_A High affinity nerve gro 98.7 9E-10 3.1E-14 105.7 -0.5 84 425-519 227-311 (329)
157 3rw6_A Nuclear RNA export fact 98.7 1E-09 3.5E-14 101.1 -0.3 79 147-227 168-257 (267)
158 4asz_A BDNF/NT-3 growth factor 98.7 1.2E-09 4.1E-14 103.3 -1.2 83 425-518 197-280 (299)
159 4ase_A Vascular endothelial gr 98.6 2.3E-09 7.8E-14 103.8 -0.9 85 425-519 254-339 (353)
160 3omv_A RAF proto-oncogene seri 98.6 7.2E-09 2.5E-13 98.1 0.5 76 434-519 213-292 (307)
161 1io0_A Tropomodulin; LRR prote 98.5 3.1E-08 1.1E-12 86.7 2.8 63 172-234 92-164 (185)
162 1io0_A Tropomodulin; LRR prote 98.5 2.4E-08 8.1E-13 87.5 0.8 112 98-209 33-163 (185)
163 3hmm_A TGF-beta receptor type- 98.4 3E-08 1E-12 94.2 1.0 86 434-519 194-289 (303)
164 3rw6_A Nuclear RNA export fact 98.3 5.8E-07 2E-11 82.7 5.5 106 97-204 137-258 (267)
165 3uim_A Brassinosteroid insensi 98.1 4.3E-07 1.5E-11 87.2 -0.4 84 433-519 210-303 (326)
166 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.7E-11 73.8 2.8 82 343-424 63-150 (176)
167 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.5E-11 74.0 1.8 82 126-207 62-149 (176)
168 3fpq_A Serine/threonine-protei 98.0 5.5E-07 1.9E-11 84.4 -1.3 75 434-518 205-280 (290)
169 3poz_A Epidermal growth factor 98.0 6.7E-07 2.3E-11 86.0 -0.7 76 432-518 193-269 (327)
170 4b9d_A Serine/threonine-protei 97.9 8E-07 2.7E-11 85.4 -1.1 82 426-518 193-274 (350)
171 3cbl_A C-FES, proto-oncogene t 97.9 8.8E-07 3E-11 87.0 -1.1 76 432-518 289-365 (377)
172 4g3f_A NF-kappa-beta-inducing 97.9 1.2E-06 4.1E-11 83.7 -0.4 82 427-518 225-307 (336)
173 2qkw_B Protein kinase; three-h 97.9 7.8E-07 2.7E-11 85.3 -2.2 83 433-518 216-306 (321)
174 1qcf_A Haematopoetic cell kina 97.9 1.2E-06 4E-11 88.4 -1.1 75 433-518 360-435 (454)
175 2qol_A Ephrin receptor; recept 97.9 9.1E-07 3.1E-11 86.7 -2.6 77 432-519 224-301 (373)
176 1k9a_A Carboxyl-terminal SRC k 97.8 2.3E-06 7.8E-11 86.2 -0.0 76 432-518 360-436 (450)
177 2ozo_A Tyrosine-protein kinase 97.8 2.4E-06 8.3E-11 89.4 -0.2 76 432-518 513-589 (613)
178 3kul_A Ephrin type-A receptor 97.8 1.6E-06 5.5E-11 83.3 -1.7 75 433-518 229-304 (325)
179 1opk_A P150, C-ABL, proto-onco 97.8 2.6E-06 9E-11 86.8 -0.1 76 432-518 393-469 (495)
180 4fih_A Serine/threonine-protei 97.8 3.5E-06 1.2E-10 80.8 0.4 82 426-518 238-321 (346)
181 3q60_A ROP5B; pseudokinase, tr 97.8 5.6E-06 1.9E-10 81.0 1.8 84 433-519 268-351 (371)
182 2eva_A TAK1 kinase - TAB1 chim 97.8 2.1E-06 7E-11 81.8 -1.4 77 433-518 178-254 (307)
183 2psq_A Fibroblast growth facto 97.8 2.7E-06 9.3E-11 83.2 -0.6 77 432-519 279-356 (370)
184 1fmk_A C-SRC, P60-SRC, tyrosin 97.8 2.4E-06 8.1E-11 86.1 -1.1 75 433-518 356-431 (452)
185 3lzb_A Epidermal growth factor 97.8 2.6E-06 8.8E-11 81.9 -0.8 75 433-518 194-269 (327)
186 3gxj_A TGF-beta receptor type- 97.8 7.5E-06 2.6E-10 77.5 2.2 84 435-518 195-288 (303)
187 1xbb_A Tyrosine-protein kinase 97.8 3.5E-06 1.2E-10 79.4 -0.2 75 433-518 195-270 (291)
188 3kmu_A ILK, integrin-linked ki 97.7 2.5E-06 8.6E-11 79.3 -1.5 72 437-518 190-261 (271)
189 3vhe_A Vascular endothelial gr 97.7 3.2E-06 1.1E-10 82.3 -0.9 77 432-518 269-346 (359)
190 3cc6_A Protein tyrosine kinase 97.7 3.2E-06 1.1E-10 79.2 -0.9 75 433-518 189-264 (281)
191 3dtc_A Mitogen-activated prote 97.7 2.3E-06 8E-11 79.6 -2.0 75 434-518 190-264 (271)
192 3dbq_A Dual specificity protei 97.7 4.4E-06 1.5E-10 80.8 -0.2 77 433-518 195-271 (343)
193 1u59_A Tyrosine-protein kinase 97.7 4E-06 1.4E-10 78.8 -0.5 75 433-518 188-263 (287)
194 1mqb_A Ephrin type-A receptor 97.7 3.9E-06 1.3E-10 80.9 -0.6 75 433-518 225-300 (333)
195 3l9p_A Anaplastic lymphoma kin 97.7 2.8E-06 9.5E-11 83.1 -1.7 75 433-518 261-336 (367)
196 2w5a_A Serine/threonine-protei 97.7 2.8E-06 9.4E-11 79.5 -1.8 75 434-519 192-266 (279)
197 4f0f_A Serine/threonine-protei 97.7 3.5E-06 1.2E-10 79.2 -1.2 76 434-518 204-280 (287)
198 2zmd_A Dual specificity protei 97.7 5.1E-06 1.7E-10 81.9 -0.1 76 434-518 243-318 (390)
199 2ivs_A Proto-oncogene tyrosine 97.7 5.1E-06 1.7E-10 79.2 -0.1 75 433-518 227-302 (314)
200 1byg_A CSK, protein (C-termina 97.7 4.4E-06 1.5E-10 78.1 -0.9 74 434-518 190-264 (278)
201 2i1m_A Macrophage colony-stimu 97.7 4.4E-06 1.5E-10 80.4 -0.9 76 433-518 241-317 (333)
202 4fl3_A Tyrosine-protein kinase 97.7 5.6E-06 1.9E-10 86.9 -0.2 76 432-518 546-622 (635)
203 3kex_A Receptor tyrosine-prote 97.7 2.9E-06 9.9E-11 81.4 -2.3 75 433-518 192-267 (325)
204 1mp8_A Focal adhesion kinase 1 97.7 5.7E-06 2E-10 77.5 -0.2 75 433-518 192-267 (281)
205 3uzp_A CKI-delta, CKID, casein 97.7 3E-06 1E-10 80.0 -2.1 78 434-518 191-271 (296)
206 1rjb_A FL cytokine receptor; k 97.7 5.9E-06 2E-10 79.9 -0.3 76 433-518 249-325 (344)
207 3p86_A Serine/threonine-protei 97.7 4.4E-06 1.5E-10 79.6 -1.2 75 434-518 215-289 (309)
208 3c1x_A Hepatocyte growth facto 97.7 5.2E-06 1.8E-10 81.3 -0.7 75 433-518 271-346 (373)
209 3tt0_A Basic fibroblast growth 97.7 3.8E-06 1.3E-10 82.6 -1.8 76 433-519 268-344 (382)
210 3ugc_A Tyrosine-protein kinase 97.6 2.1E-06 7.3E-11 81.1 -3.5 83 433-518 192-282 (295)
211 2h8h_A Proto-oncogene tyrosine 97.6 5.4E-06 1.8E-10 85.3 -1.0 75 433-518 439-514 (535)
212 3sxs_A Cytoplasmic tyrosine-pr 97.6 5.7E-06 1.9E-10 76.9 -0.8 75 433-518 180-255 (268)
213 3a7i_A MST3 kinase, serine/thr 97.6 5.6E-06 1.9E-10 78.5 -0.8 75 434-519 195-269 (303)
214 4hgt_A Casein kinase I isoform 97.6 3.1E-06 1E-10 79.9 -2.7 78 434-518 191-271 (296)
215 1t46_A HOMO sapiens V-KIT hard 97.6 6.8E-06 2.3E-10 78.2 -0.5 76 433-518 222-298 (313)
216 4hcu_A Tyrosine-protein kinase 97.6 5.6E-06 1.9E-10 77.0 -1.1 75 433-518 182-257 (269)
217 3qup_A Tyrosine-protein kinase 97.6 7.5E-06 2.6E-10 78.4 -0.2 74 434-518 215-289 (323)
218 3fme_A Dual specificity mitoge 97.6 6.9E-06 2.4E-10 77.2 -0.6 77 434-519 189-265 (290)
219 3q4u_A Activin receptor type-1 97.6 5.8E-06 2E-10 78.2 -1.1 85 434-518 199-293 (301)
220 3s95_A LIMK-1, LIM domain kina 97.6 1.2E-05 4.3E-10 76.3 1.1 77 433-518 197-273 (310)
221 3an0_A Dual specificity mitoge 97.6 7.8E-06 2.7E-10 78.9 -0.4 77 434-519 233-309 (340)
222 2v62_A Serine/threonine-protei 97.6 4.9E-06 1.7E-10 80.6 -1.9 75 434-518 236-319 (345)
223 3cek_A Dual specificity protei 97.6 8.7E-06 3E-10 77.5 -0.1 76 434-518 215-290 (313)
224 3gen_A Tyrosine-protein kinase 97.6 6.1E-06 2.1E-10 77.3 -1.2 75 433-518 196-271 (283)
225 1qpc_A LCK kinase; alpha beta 97.6 6.7E-06 2.3E-10 76.9 -1.1 75 433-518 185-260 (279)
226 2pvf_A Fibroblast growth facto 97.6 5.8E-06 2E-10 79.6 -1.7 75 433-518 234-309 (334)
227 2xir_A Vascular endothelial gr 97.6 8.6E-06 3E-10 77.6 -0.5 76 433-518 225-301 (316)
228 3brb_A Proto-oncogene tyrosine 97.6 9.6E-06 3.3E-10 77.2 -0.1 74 434-518 225-299 (313)
229 2nru_A Interleukin-1 receptor- 97.6 2.7E-05 9.3E-10 73.8 3.0 80 435-518 211-297 (307)
230 4fie_A Serine/threonine-protei 97.6 1.1E-05 3.7E-10 79.5 0.1 80 428-518 317-398 (423)
231 3t9t_A Tyrosine-protein kinase 97.6 7.4E-06 2.5E-10 76.0 -1.1 75 433-518 180-255 (267)
232 1luf_A Muscle-specific tyrosin 97.6 7.5E-06 2.6E-10 79.1 -1.2 75 433-518 251-326 (343)
233 3kfa_A Tyrosine-protein kinase 97.6 1E-05 3.5E-10 76.0 -0.2 75 433-518 187-262 (288)
234 3lb7_A RAF proto-oncogene seri 97.6 1.2E-05 4.1E-10 76.4 0.2 74 435-518 214-291 (307)
235 3soc_A Activin receptor type-2 97.5 1.2E-05 4.1E-10 77.0 0.1 86 434-519 214-310 (322)
236 2yfx_A Tyrosine-protein kinase 97.5 6.8E-06 2.3E-10 78.9 -1.7 75 433-518 220-295 (327)
237 3kn6_A Ribosomal protein S6 ki 97.5 2.1E-05 7.2E-10 75.4 1.6 84 432-519 183-269 (325)
238 1u5q_A Serine/threonine protei 97.5 1.2E-05 4.2E-10 77.8 -0.1 76 434-519 229-304 (348)
239 3lxp_A Non-receptor tyrosine-p 97.5 3.2E-06 1.1E-10 80.9 -4.3 83 433-518 212-301 (318)
240 3pls_A Macrophage-stimulating 97.5 1.1E-05 3.7E-10 76.2 -0.6 75 434-518 204-278 (298)
241 1csn_A Casein kinase-1; phosph 97.5 3.3E-06 1.1E-10 79.8 -4.3 78 434-518 194-274 (298)
242 3hyh_A Carbon catabolite-derep 97.5 1.3E-05 4.6E-10 74.3 -0.0 71 436-518 190-260 (275)
243 3fxz_A Serine/threonine-protei 97.5 9.9E-06 3.4E-10 76.6 -0.9 76 434-519 192-268 (297)
244 1u46_A ACK-1, activated CDC42 97.5 7.7E-06 2.6E-10 76.9 -1.8 76 433-518 199-275 (291)
245 2zv2_A Calcium/calmodulin-depe 97.5 1.6E-05 5.4E-10 75.2 0.1 73 436-519 218-291 (298)
246 1fvr_A Tyrosine-protein kinase 97.5 1.2E-05 4E-10 77.2 -0.8 74 434-518 217-291 (327)
247 2c30_A Serine/threonine-protei 97.5 1.5E-05 5.1E-10 76.3 -0.2 75 433-518 216-292 (321)
248 2clq_A Mitogen-activated prote 97.5 1.8E-05 6.1E-10 74.6 0.4 75 435-518 202-276 (295)
249 2buj_A Serine/threonine-protei 97.5 1E-05 3.5E-10 77.1 -1.3 75 435-518 223-297 (317)
250 3op5_A Serine/threonine-protei 97.5 9.6E-06 3.3E-10 79.1 -1.6 80 433-518 236-320 (364)
251 3aln_A Dual specificity mitoge 97.5 1.5E-05 5.2E-10 76.4 -0.3 80 434-519 205-284 (327)
252 3lxl_A Tyrosine-protein kinase 97.5 7E-06 2.4E-10 78.8 -2.7 83 433-518 205-294 (327)
253 3kk8_A Calcium/calmodulin depe 97.5 1.3E-05 4.6E-10 75.0 -0.8 75 434-519 183-260 (284)
254 3llt_A Serine/threonine kinase 97.5 2E-05 6.8E-10 76.7 0.3 26 434-459 235-260 (360)
255 2yex_A Serine/threonine-protei 97.4 3.2E-05 1.1E-09 72.0 1.6 75 436-519 186-260 (276)
256 2y4i_B KSR2, HKSR2, kinase sup 97.4 1.4E-05 4.7E-10 76.3 -1.0 74 434-518 219-293 (319)
257 1b6c_B TGF-B superfamily recep 97.4 2.2E-05 7.4E-10 75.8 0.3 81 436-519 235-328 (342)
258 3cok_A Serine/threonine-protei 97.4 2.8E-05 9.7E-10 72.5 1.0 74 434-519 188-261 (278)
259 2w1i_A JAK2; chromosomal rearr 97.4 5.9E-06 2E-10 79.3 -3.9 83 434-519 224-314 (326)
260 3f66_A Hepatocyte growth facto 97.4 2.2E-05 7.4E-10 74.1 -0.2 75 433-518 207-282 (298)
261 3tki_A Serine/threonine-protei 97.4 3.8E-05 1.3E-09 73.5 1.6 75 436-519 186-260 (323)
262 3mdy_A Bone morphogenetic prot 97.4 1.9E-05 6.6E-10 75.9 -0.7 81 438-518 232-322 (337)
263 4aw0_A HPDK1, 3-phosphoinositi 97.4 1.7E-05 5.7E-10 74.9 -1.2 75 432-518 208-282 (311)
264 3ll6_A Cyclin G-associated kin 97.4 1.2E-05 4.2E-10 77.2 -2.1 71 434-518 229-299 (337)
265 1p4o_A Insulin-like growth fac 97.4 1.6E-05 5.5E-10 76.0 -1.4 75 433-518 215-290 (322)
266 2eue_A Carbon catabolite derep 97.4 2.6E-05 8.9E-10 72.6 0.1 72 436-519 190-261 (275)
267 2wqm_A Serine/threonine-protei 97.4 1.6E-05 5.4E-10 75.6 -1.6 76 434-518 212-288 (310)
268 3og7_A AKAP9-BRAF fusion prote 97.4 2.8E-05 9.6E-10 73.0 0.1 74 435-518 202-279 (289)
269 3ubd_A Ribosomal protein S6 ki 97.4 1.9E-05 6.5E-10 74.4 -1.2 77 427-515 195-271 (304)
270 3p1a_A MYT1 kinase, membrane-a 97.3 1.5E-05 5.3E-10 75.8 -2.0 72 434-518 231-302 (311)
271 1t4h_A Serine/threonine-protei 97.3 1.9E-05 6.6E-10 74.2 -1.3 74 435-518 206-280 (290)
272 2dyl_A Dual specificity mitoge 97.3 2.7E-05 9.2E-10 74.2 -0.4 77 434-519 205-282 (318)
273 3f3z_A Calcium/calmodulin-depe 97.3 3.6E-05 1.2E-09 71.7 0.5 73 435-519 184-260 (277)
274 2ycf_A Serine/threonine-protei 97.3 5.1E-05 1.7E-09 72.5 1.3 75 434-518 195-272 (322)
275 3lm5_A Serine/threonine-protei 97.3 1.9E-05 6.6E-10 75.7 -1.8 77 433-519 208-286 (327)
276 3sv0_A Casein kinase I-like; t 97.3 9.5E-06 3.3E-10 82.1 -4.1 78 434-518 189-269 (483)
277 3fdn_A Serine/threonine-protei 97.3 3.5E-05 1.2E-09 71.9 -0.2 73 434-518 183-255 (279)
278 4e5w_A Tyrosine-protein kinase 97.3 1.7E-05 5.8E-10 75.0 -2.6 83 433-518 204-293 (302)
279 3byv_A Rhoptry kinase; malaria 97.3 4.8E-05 1.7E-09 74.5 0.6 69 434-518 289-357 (377)
280 2j0j_A Focal adhesion kinase 1 97.3 2.9E-05 9.9E-10 81.8 -1.2 75 433-518 567-642 (656)
281 3m2w_A MAP kinase-activated pr 97.3 6.1E-05 2.1E-09 71.1 1.1 80 433-518 173-254 (299)
282 3hko_A Calcium/calmodulin-depe 97.2 5.3E-05 1.8E-09 73.1 0.7 75 434-518 252-328 (345)
283 2rku_A Serine/threonine-protei 97.2 5.5E-05 1.9E-09 71.2 0.7 74 434-519 191-264 (294)
284 2j7t_A Serine/threonine-protei 97.2 7.3E-05 2.5E-09 70.6 1.4 76 434-519 198-274 (302)
285 1x8b_A WEE1HU, WEE1-like prote 97.2 4.3E-05 1.5E-09 71.5 -0.2 70 435-518 208-277 (289)
286 2izr_A Casein kinase I isoform 97.2 1.5E-05 5.3E-10 76.5 -3.5 78 433-518 192-272 (330)
287 1tki_A Titin; serine kinase, m 97.2 2.2E-05 7.6E-10 75.1 -2.4 75 434-518 179-255 (321)
288 3com_A Serine/threonine-protei 97.2 6.2E-05 2.1E-09 71.5 0.8 75 434-519 201-277 (314)
289 2y0a_A Death-associated protei 97.2 2.6E-05 9E-10 74.7 -1.9 74 433-518 192-269 (326)
290 3dzo_A Rhoptry kinase domain; 97.2 5.8E-05 2E-09 74.9 0.4 71 433-519 292-362 (413)
291 2vx3_A Dual specificity tyrosi 97.2 7.6E-05 2.6E-09 73.2 1.2 27 433-459 233-259 (382)
292 3i6u_A CDS1, serine/threonine- 97.2 6.7E-05 2.3E-09 74.6 0.8 75 434-518 320-397 (419)
293 3g2f_A Bone morphogenetic prot 97.2 7.2E-05 2.5E-09 71.8 1.0 85 434-518 211-309 (336)
294 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0002 6.9E-09 62.2 3.7 16 409-424 153-168 (197)
295 3fhr_A MAP kinase-activated pr 97.2 4.4E-05 1.5E-09 73.5 -0.6 83 432-518 203-285 (336)
296 2y7j_A Phosphorylase B kinase 97.2 5.4E-05 1.8E-09 73.8 -0.0 73 435-518 282-357 (365)
297 1q8y_A SR protein kinase; tran 97.2 0.00011 3.8E-09 71.7 2.2 27 433-459 210-236 (373)
298 1z57_A Dual specificity protei 97.2 8.3E-05 2.8E-09 71.4 1.2 26 434-459 210-235 (339)
299 2vwi_A Serine/threonine-protei 97.2 6.1E-05 2.1E-09 71.1 0.2 77 435-518 204-285 (303)
300 3bhy_A Death-associated protei 97.2 2.8E-05 9.5E-10 72.8 -2.2 73 434-518 187-263 (283)
301 2bdw_A Hypothetical protein K1 97.2 4E-05 1.4E-09 74.6 -1.3 76 434-519 206-283 (362)
302 2qr7_A Ribosomal protein S6 ki 97.1 4.3E-05 1.5E-09 73.7 -1.2 78 434-519 196-276 (342)
303 2eu9_A Dual specificity protei 97.1 8.7E-05 3E-09 71.8 1.0 26 434-459 215-240 (355)
304 2jii_A Serine/threonine-protei 97.1 3.8E-05 1.3E-09 74.5 -1.7 76 434-518 244-327 (352)
305 2x7f_A TRAF2 and NCK-interacti 97.1 5.6E-05 1.9E-09 72.3 -0.4 75 434-518 210-284 (326)
306 2wtk_C Serine/threonine-protei 97.1 7.4E-05 2.5E-09 70.6 0.4 71 436-518 191-261 (305)
307 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00028 9.6E-09 61.2 4.0 86 147-232 68-168 (197)
308 4g31_A Eukaryotic translation 97.1 5.4E-05 1.8E-09 71.4 -0.6 80 426-518 198-277 (299)
309 3is5_A Calcium-dependent prote 97.1 4.6E-05 1.6E-09 71.4 -1.1 72 435-518 202-276 (285)
310 3g33_A Cell division protein k 97.1 6.5E-05 2.2E-09 71.2 -0.1 27 433-459 194-220 (308)
311 4euu_A Serine/threonine-protei 97.1 9.4E-05 3.2E-09 70.5 1.0 80 433-518 198-300 (319)
312 3fe3_A MAP/microtubule affinit 97.1 9.2E-05 3.1E-09 70.9 0.8 72 436-519 192-263 (328)
313 4agu_A Cyclin-dependent kinase 97.1 7.1E-05 2.4E-09 71.0 0.0 26 434-459 179-204 (311)
314 3h4j_B AMPK kdaid, SNF1-like p 97.1 6.4E-05 2.2E-09 72.3 -0.3 72 436-519 186-257 (336)
315 2a2a_A Death-associated protei 97.1 4.6E-05 1.6E-09 72.8 -1.3 74 433-518 193-270 (321)
316 2jam_A Calcium/calmodulin-depe 97.1 5.7E-05 2E-09 71.5 -0.7 74 434-518 183-259 (304)
317 2h6d_A 5'-AMP-activated protei 97.1 6.4E-05 2.2E-09 69.9 -0.4 71 436-518 189-259 (276)
318 1phk_A Phosphorylase kinase; g 97.1 6.8E-05 2.3E-09 70.6 -0.4 76 434-519 205-282 (298)
319 1nxk_A MAP kinase-activated pr 97.1 9.4E-05 3.2E-09 73.0 0.6 80 433-518 238-319 (400)
320 2owb_A Serine/threonine-protei 97.1 8.7E-05 3E-09 71.3 0.4 74 434-519 217-290 (335)
321 3soa_A Calcium/calmodulin-depe 97.1 6E-05 2E-09 75.5 -0.9 74 434-518 189-265 (444)
322 2vgo_A Serine/threonine-protei 97.1 8.2E-05 2.8E-09 69.6 0.0 73 434-518 188-260 (284)
323 3zgw_A Maternal embryonic leuc 97.1 8.1E-05 2.8E-09 71.9 -0.0 72 435-518 187-258 (347)
324 3e3p_A Protein kinase, putativ 97.1 9.7E-05 3.3E-09 71.7 0.5 25 435-459 209-233 (360)
325 4aaa_A Cyclin-dependent kinase 97.1 8.8E-05 3E-09 71.1 0.2 26 434-459 201-226 (331)
326 2w4o_A Calcium/calmodulin-depe 97.1 4.5E-05 1.5E-09 73.9 -2.0 76 434-518 226-303 (349)
327 3gni_B Strad alpha; kinase fol 97.1 0.00013 4.5E-09 71.6 1.3 26 434-459 213-238 (389)
328 3a99_A Proto-oncogene serine/t 97.1 5.6E-05 1.9E-09 72.2 -1.4 65 436-518 227-291 (320)
329 3uc3_A Serine/threonine-protei 97.0 9.6E-05 3.3E-09 71.9 0.2 76 437-518 197-272 (361)
330 3dls_A PAS domain-containing s 97.0 8.1E-05 2.8E-09 71.6 -0.4 65 436-518 208-272 (335)
331 2wei_A Calmodulin-domain prote 97.0 7.9E-05 2.7E-09 69.8 -0.5 73 435-518 199-274 (287)
332 3niz_A Rhodanese family protei 97.0 0.00016 5.5E-09 68.6 1.6 26 434-459 196-221 (311)
333 2h34_A Serine/threonine-protei 97.0 6.8E-05 2.3E-09 71.2 -1.1 74 434-518 211-287 (309)
334 2a19_B Interferon-induced, dou 97.0 4.9E-05 1.7E-09 71.0 -2.1 69 434-518 197-265 (284)
335 3c0i_A Peripheral plasma membr 97.0 7.4E-05 2.5E-09 72.4 -1.0 74 434-518 209-284 (351)
336 4fvq_A Tyrosine-protein kinase 97.0 7E-05 2.4E-09 70.2 -1.3 70 434-518 194-266 (289)
337 2rio_A Serine/threonine-protei 97.0 0.00011 3.7E-09 73.4 -0.1 74 433-518 214-293 (434)
338 2ac3_A MAP kinase-interacting 97.0 0.00017 5.9E-09 68.5 1.3 81 434-518 202-293 (316)
339 1wak_A Serine/threonine-protei 97.0 0.00019 6.6E-09 70.5 1.6 26 434-459 269-294 (397)
340 1kob_A Twitchin; kinase, intra 97.0 5.4E-05 1.8E-09 74.3 -2.5 76 433-518 225-302 (387)
341 2x4f_A Myosin light chain kina 96.9 6.9E-05 2.4E-09 73.2 -2.0 76 433-518 263-340 (373)
342 2yab_A Death-associated protei 96.9 0.0001 3.4E-09 71.7 -0.9 73 434-518 194-270 (361)
343 2xrw_A Mitogen-activated prote 96.9 0.0003 1E-08 68.6 2.5 26 434-459 202-227 (371)
344 3eqc_A Dual specificity mitoge 96.9 0.00011 3.7E-09 71.4 -0.8 26 434-459 206-231 (360)
345 3mtl_A Cell division protein k 96.9 0.00013 4.5E-09 69.7 -0.2 26 434-459 177-202 (324)
346 2iwi_A Serine/threonine-protei 96.9 0.00019 6.6E-09 68.0 0.9 65 436-518 217-281 (312)
347 3qd2_B Eukaryotic translation 96.9 0.00011 3.8E-09 70.3 -0.9 72 434-518 252-323 (332)
348 2pmi_A Negative RE, cyclin-dep 96.9 0.00028 9.6E-09 67.1 1.9 25 435-459 186-210 (317)
349 1blx_A Cyclin-dependent kinase 96.9 0.00015 5.1E-09 69.2 -0.0 26 434-459 195-220 (326)
350 3p23_A Serine/threonine-protei 96.9 0.00028 9.5E-09 70.4 1.8 73 435-518 206-281 (432)
351 3kvw_A DYRK2, dual specificity 96.9 0.00014 5E-09 72.4 -0.3 28 432-459 273-300 (429)
352 2pml_X PFPK7, Ser/Thr protein 96.9 0.00015 5.1E-09 70.0 -0.2 77 438-518 232-320 (348)
353 1ob3_A PFPK5, cell division co 96.8 0.0002 7E-09 67.0 0.5 81 435-518 178-278 (288)
354 3gbz_A Kinase, CMGC CDK; ssgci 96.8 0.00015 5.3E-09 69.4 -0.4 25 435-459 215-239 (329)
355 1vzo_A Ribosomal protein S6 ki 96.8 0.00024 8.3E-09 68.8 0.7 76 435-518 239-319 (355)
356 3lij_A Calcium/calmodulin depe 96.8 0.00022 7.7E-09 72.5 0.5 73 435-518 214-289 (494)
357 2y94_A 5'-AMP-activated protei 96.8 0.0003 1E-08 70.9 1.3 71 436-518 194-264 (476)
358 4eut_A Serine/threonine-protei 96.8 0.00031 1.1E-08 69.2 1.4 82 434-518 199-300 (396)
359 2i6l_A Mitogen-activated prote 96.8 0.00016 5.6E-09 68.7 -0.6 26 434-459 201-226 (320)
360 3qyz_A Mitogen-activated prote 96.8 0.00027 9.3E-09 68.7 1.0 25 435-459 209-233 (364)
361 3qa8_A MGC80376 protein; kinas 96.8 0.00073 2.5E-08 70.5 4.1 83 433-518 198-295 (676)
362 3nyv_A Calmodulin-domain prote 96.8 0.00019 6.6E-09 72.8 -0.3 73 435-518 204-279 (484)
363 2r3i_A Cell division protein k 96.8 0.00026 9E-09 66.6 0.5 25 435-459 181-205 (299)
364 4eqm_A Protein kinase; transfe 96.7 7.3E-05 2.5E-09 70.4 -3.4 76 433-518 187-266 (294)
365 3ttj_A Mitogen-activated prote 96.7 0.00074 2.5E-08 67.9 3.6 27 433-459 238-264 (464)
366 3ork_A Serine/threonine protei 96.7 6.8E-05 2.3E-09 71.2 -3.8 76 433-518 194-271 (311)
367 3a8x_A Protein kinase C IOTA t 96.7 0.00031 1.1E-08 67.7 0.5 78 433-515 185-264 (345)
368 3uqc_A Probable conserved tran 96.7 0.00045 1.5E-08 64.7 1.5 77 434-518 178-256 (286)
369 3mwu_A Calmodulin-domain prote 96.7 0.00031 1.1E-08 71.3 0.4 74 435-518 199-274 (486)
370 3oz6_A Mitogen-activated prote 96.7 0.00022 7.5E-09 70.1 -0.7 26 434-459 207-232 (388)
371 3q5i_A Protein kinase; CDPK, m 96.7 0.0003 1E-08 71.8 0.1 73 435-518 224-299 (504)
372 3mi9_A Cell division protein k 96.6 0.00068 2.3E-08 65.4 2.5 25 435-459 206-230 (351)
373 4b99_A Mitogen-activated prote 96.6 0.00042 1.4E-08 68.0 1.0 25 435-459 240-264 (398)
374 4dc2_A Protein kinase C IOTA t 96.6 0.00053 1.8E-08 67.3 1.5 78 433-515 228-307 (396)
375 1xjd_A Protein kinase C, theta 96.6 0.00036 1.2E-08 67.3 0.0 74 433-518 193-267 (345)
376 1ua2_A CAK, cell division prot 96.6 0.0004 1.4E-08 67.0 0.3 25 435-459 190-214 (346)
377 1o6l_A RAC-beta serine/threoni 96.6 0.00038 1.3E-08 66.8 0.1 73 434-518 181-258 (337)
378 2b9h_A MAP kinase FUS3, mitoge 96.5 0.00053 1.8E-08 66.2 1.0 26 434-459 199-224 (353)
379 3o0g_A Cell division protein k 96.5 0.0004 1.4E-08 65.1 0.1 24 435-458 179-202 (292)
380 3eb0_A Putative uncharacterize 96.5 0.00036 1.2E-08 68.4 -0.3 25 435-459 219-243 (383)
381 1rdq_E PKA C-alpha, CAMP-depen 96.5 0.00045 1.5E-08 66.7 0.3 69 434-514 214-282 (350)
382 3nsz_A CK II alpha, casein kin 96.5 0.00043 1.5E-08 66.2 0.0 25 434-458 207-231 (330)
383 4exu_A Mitogen-activated prote 96.5 0.0006 2.1E-08 66.4 1.1 26 434-459 218-243 (371)
384 3pg1_A Mitogen-activated prote 96.5 0.0004 1.4E-08 67.4 -0.2 25 435-459 211-235 (362)
385 3uto_A Twitchin; kinase, muscl 96.5 0.00024 8.2E-09 73.4 -2.0 78 431-518 329-408 (573)
386 3coi_A Mitogen-activated prote 96.5 0.00058 2E-08 66.0 0.8 26 434-459 200-225 (353)
387 1j1b_A Glycogen synthase kinas 96.4 0.00042 1.4E-08 68.8 -0.4 26 434-459 233-258 (420)
388 4ejn_A RAC-alpha serine/threon 96.4 0.00046 1.6E-08 69.1 -0.2 75 432-518 323-402 (446)
389 4fr4_A YANK1, serine/threonine 96.4 0.00072 2.5E-08 66.1 1.1 74 435-517 194-268 (384)
390 2i0e_A Protein kinase C-beta I 96.3 0.00073 2.5E-08 65.3 0.5 71 433-515 196-266 (353)
391 4e7w_A Glycogen synthase kinas 96.3 0.00077 2.7E-08 66.3 0.6 25 435-459 219-243 (394)
392 1fot_A TPK1 delta, CAMP-depend 96.3 0.00059 2E-08 64.9 -0.3 74 433-518 178-256 (318)
393 3rgf_A Cyclin-dependent kinase 96.3 0.0005 1.7E-08 67.9 -1.0 25 435-459 213-237 (405)
394 1zy4_A Serine/threonine-protei 96.2 0.0003 1E-08 66.2 -2.7 73 434-518 207-281 (303)
395 3c4z_A Rhodopsin kinase; Ser/T 96.2 0.001 3.5E-08 68.0 1.0 76 433-517 364-440 (543)
396 3a62_A Ribosomal protein S6 ki 96.2 0.00049 1.7E-08 65.8 -1.7 71 434-516 197-267 (327)
397 3rfe_A Platelet glycoprotein I 96.2 0.0085 2.9E-07 48.3 6.0 35 151-185 33-67 (130)
398 3rfe_A Platelet glycoprotein I 96.1 0.011 3.9E-07 47.5 6.6 56 153-210 12-68 (130)
399 3txo_A PKC-L, NPKC-ETA, protei 96.1 0.00041 1.4E-08 67.1 -2.5 71 433-515 199-269 (353)
400 2r5t_A Serine/threonine-protei 96.1 0.0007 2.4E-08 66.0 -1.0 72 434-517 215-286 (373)
401 1cm8_A Phosphorylated MAP kina 96.1 0.0013 4.6E-08 63.8 1.0 26 434-459 202-227 (367)
402 2fst_X Mitogen-activated prote 96.0 0.00086 2.9E-08 65.2 -0.6 26 434-459 206-231 (367)
403 2acx_A G protein-coupled recep 96.0 0.00083 2.8E-08 69.0 -0.9 74 433-514 360-433 (576)
404 3pfq_A PKC-B, PKC-beta, protei 96.0 0.00097 3.3E-08 70.4 -0.6 72 432-515 516-587 (674)
405 3n9x_A Phosphotransferase; mal 95.9 0.0021 7E-08 64.1 1.5 26 434-459 228-253 (432)
406 4f9c_A Cell division cycle 7-r 95.9 0.0016 5.4E-08 63.1 0.6 24 435-458 224-247 (361)
407 3rp9_A Mitogen-activated prote 95.6 0.0029 1E-07 63.5 1.2 22 497-518 373-394 (458)
408 3v8s_A RHO-associated protein 95.3 0.0021 7.2E-08 63.4 -1.0 74 435-518 250-327 (410)
409 3v5w_A G-protein coupled recep 95.1 0.0047 1.6E-07 64.1 0.8 72 434-515 367-439 (689)
410 2vd5_A DMPK protein; serine/th 94.5 0.0034 1.2E-07 61.9 -2.0 74 434-518 246-325 (412)
411 4aw2_A Serine/threonine-protei 94.5 0.0035 1.2E-07 62.4 -2.0 75 434-518 257-336 (437)
412 3e7e_A HBUB1, BUB1A, mitotic c 93.5 0.013 4.5E-07 56.6 -0.0 70 432-517 259-329 (365)
413 2pzi_A Probable serine/threoni 93.0 0.0099 3.4E-07 62.9 -2.0 63 436-517 254-317 (681)
414 2lz0_A Uncharacterized protein 67.2 13 0.00043 27.8 5.9 40 118-158 13-52 (100)
415 2lz0_A Uncharacterized protein 44.9 33 0.0011 25.4 4.8 42 140-182 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.2e-50 Score=432.96 Aligned_cols=419 Identities=32% Similarity=0.506 Sum_probs=261.9
Q ss_pred CChhhHHHHHHHHHhccC---CCCCCCCCCCCCCCCCCcceeeeCCCCCEEEEEcCCCceecc---cC------------
Q 010041 32 NISIHVAASEIERQALLN---SGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGE---LG------------ 93 (519)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~---~~------------ 93 (519)
....|+.|++.+|+.+.+ +++|.. ..+||.|.||+|+ .++|+.|++++....+. ++
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~-----~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSS-----NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCT-----TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCC-----CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 345688999999998864 567864 5789999999998 78999999986443321 11
Q ss_pred ----------CCCCCCCCCCcEEECCCCccccccch--hhcCCCCCCEEEcccCcCCccCCccc-cCCCCCCEEEc----
Q 010041 94 ----------RLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDL---- 156 (519)
Q Consensus 94 ----------~~~~~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L---- 156 (519)
+..+..+++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 14688899999999999999988887 88888888888888887776666543 33444444444
Q ss_pred ---------------------------------------------cCCCCCccCCccccCCCCCCEEEccCCcCcccCch
Q 010041 157 ---------------------------------------------GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191 (519)
Q Consensus 157 ---------------------------------------------~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 191 (519)
++|.+.+.+|. ++++++|++|++++|++++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 44444433443 55555556666666655555555
Q ss_pred hccCCCCCCEEeccCCcCCCC----------------------CCcccCCc-CccCeeeCCCCcCCCcCChhhccCCCCc
Q 010041 192 EIESLRNLQWLDLSSNKLSGT----------------------IPKEIGSL-RNLKELDLSSNKLGGVLPQEIENLKSLT 248 (519)
Q Consensus 192 ~l~~l~~L~~L~l~~n~l~~~----------------------~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~~~~~L~ 248 (519)
.++++++|++|++++|.+.+. +|..+... ++|++|++++|.+.+.+|..++.+++|+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 555555555555555544432 33333322 4455555555555555555555555555
Q ss_pred eeecccccccCcCccc-ccCCCCcceeeccCccCcccCChhccCC---------------------------CCCCEEec
Q 010041 249 ALSMDANNLGGPIPST-LFRLTNIEYLSLGFNRFNGSIPREIVNL---------------------------KNLTSLSL 300 (519)
Q Consensus 249 ~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~l~~~---------------------------~~L~~L~l 300 (519)
+|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+..+ ++|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 5555555555555543 5555555555555555554444444333 33444444
Q ss_pred cCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccc
Q 010041 301 GGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQ 380 (519)
Q Consensus 301 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 380 (519)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 44444444455555556666666666666666666666666666666666666666666666677777777777777777
Q ss_pred cchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcceeeeecceeccccccccchhhhhcccccCCCCccc
Q 010041 381 IPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVVALEILMGRHPGEL 460 (519)
Q Consensus 381 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~ 460 (519)
+|..++.+++|++|++++|++++.+|..++.+++|+.|++++|++++.++.......+.....+ ..+.++|..|.+.
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L---s~N~l~g~ip~~~ 558 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL---NTNLFNGTIPAAM 558 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC---CSSEEESBCCGGG
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC---CCCccCCcCChHH
Confidence 7777777777777777777777777777777777777777777777766554433333322222 2245667777543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-47 Score=403.65 Aligned_cols=389 Identities=21% Similarity=0.307 Sum_probs=331.8
Q ss_pred CChhhHHHHHHHHHhccCC------------CCCCCCCCCCCCCCCCc---ceeeeCCCCCEEEEEcCCCceecccCCCC
Q 010041 32 NISIHVAASEIERQALLNS------------GWWKDRIPQNTSDHCGW---VGITCDYEGRITDIGLQKSNIKGELGRLN 96 (519)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~------------~~w~~~~~~~~~~~C~w---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~ 96 (519)
....++.|+..++++.... ..|+. ..++|.| .||+|+..++|+.|+|++....+.+ ++.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l-p~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV-PDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE-CGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-----CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC-ChH
Confidence 3445788888888876431 14543 4789999 9999988899999999976655544 478
Q ss_pred CCCCCCCcEEECCCCc----------------------------------------------------------------
Q 010041 97 FSCFPNLQYLDLGSNN---------------------------------------------------------------- 112 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~---------------------------------------------------------------- 112 (519)
++.+++|++|+|++|.
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 9999999999999884
Q ss_pred --------------cccccchhhcCCCCCCEEEcccCcCCcc-----------------CCcccc--CCCCCCEEEccCC
Q 010041 113 --------------LSGSIPSQIDSLSNLTYIYLYENNLTGT-----------------IPKEIG--SLRNLEVLDLGSN 159 (519)
Q Consensus 113 --------------~~~~~~~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L~~L~L~~n 159 (519)
+++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 334 788899999999999999999986 999999 9999999999999
Q ss_pred CCCccCCccccCCCCCCEEEccCCc-Ccc-cCchhccCC------CCCCEEeccCCcCCCCCCc--ccCCcCccCeeeCC
Q 010041 160 NLNGTIPIEIGSVRNLETLSLDGNK-LSG-TIPIEIESL------RNLQWLDLSSNKLSGTIPK--EIGSLRNLKELDLS 229 (519)
Q Consensus 160 ~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~ 229 (519)
.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999999999999999999998 998 899988887 99999999999999 8898 89999999999999
Q ss_pred CCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCC-cceeeccCccCcccCChhccCCC--CCCEEeccCCccc
Q 010041 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTN-IEYLSLGFNRFNGSIPREIVNLK--NLTSLSLGGNKLT 306 (519)
Q Consensus 230 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~ 306 (519)
+|.+.|.+| .+..+++|+.|++++|.+. .+|..+.++++ |++|++++|.++ .+|..+...+ +|++|++++|.+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 999998899 8999999999999999998 78888999999 999999999998 7888777655 8999999999999
Q ss_pred ccCCCCCC-------CCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCC-C-------CCCcEEE
Q 010041 307 GHIPSTLG-------RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTK-L-------SHLKYLN 371 (519)
Q Consensus 307 ~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l-------~~L~~L~ 371 (519)
+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|+++ .+|..... . ++|++|+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 98888888 7889999999999998555555667899999999999988 55544332 2 2888999
Q ss_pred ccCccCccccchhhh--cccCCCEEEccCCccccccccccccCCCCCEEEcc------CCcceeeeeccee
Q 010041 372 LSSNLLSGQIPFAIG--KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLN------HNSLNGKLAHTMV 434 (519)
Q Consensus 372 l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~------~n~l~~~~~~~~~ 434 (519)
+++|.++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|+++ +|++.+.++....
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 9998888 6777776 88888999999988887 78888888888888884 5666666654443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-46 Score=403.46 Aligned_cols=378 Identities=34% Similarity=0.544 Sum_probs=224.7
Q ss_pred EEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCcc-ccCCCCCCEEEc
Q 010041 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE-IGSLRNLEVLDL 156 (519)
Q Consensus 78 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L 156 (519)
++.|+++++.....++......+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|.. +.++++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 4445555444333222222223466777777777766666666777777777777777666666654 666666777777
Q ss_pred cCCCCCccCCccccCCC-CCCEEEccCCcCcccCchhccC--CCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcC
Q 010041 157 GSNNLNGTIPIEIGSVR-NLETLSLDGNKLSGTIPIEIES--LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKL 233 (519)
Q Consensus 157 ~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 233 (519)
++|.+.+.+|..+.+++ +|++|++++|++++.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 66666666666555554 5555555555555555544444 45555566655555555555566666666666666666
Q ss_pred CCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCC
Q 010041 234 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTL 313 (519)
Q Consensus 234 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l 313 (519)
++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666665666666
Q ss_pred CCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCC----------------------------------
Q 010041 314 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD---------------------------------- 359 (519)
Q Consensus 314 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------------------- 359 (519)
+.+++|++|++++|++.+.+|..++.+++|++|++++|+++|.+|.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 6666666666666666666666666666666666666655544432
Q ss_pred ------------------------------------CCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcccc
Q 010041 360 ------------------------------------ELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSG 403 (519)
Q Consensus 360 ------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 403 (519)
.+..+++|+.|++++|+++|.+|..++.++.|+.|++++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 22234556666666666666666666666666666666666666
Q ss_pred ccccccccCCCCCEEEccCCcceeeeecceeccccccccchhhhhcccccCCCCc
Q 010041 404 SIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVVALEILMGRHPG 458 (519)
Q Consensus 404 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~ 458 (519)
.+|..+++++.|+.||+++|+++|.++...........+. +..+.++|.+|.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~---ls~N~l~g~iP~ 722 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID---LSNNNLSGPIPE 722 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE---CCSSEEEEECCS
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE---CcCCcccccCCC
Confidence 6666666666666666666666666655443222222222 223556666664
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-45 Score=395.14 Aligned_cols=393 Identities=22% Similarity=0.288 Sum_probs=324.9
Q ss_pred CCChhhHHHHHHHHHhccCCCCCCCCCCCCCCCC--CCc------------ceeeeCCCCCEEEEEcCCCceecccCCCC
Q 010041 31 TNISIHVAASEIERQALLNSGWWKDRIPQNTSDH--CGW------------VGITCDYEGRITDIGLQKSNIKGELGRLN 96 (519)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--C~w------------~gv~c~~~~~v~~l~l~~~~~~~~~~~~~ 96 (519)
+....+..|+..+|+++.+. .|+....+...++ |+| .||.|+..++|+.|+|++....+.+ ++.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i-p~~ 342 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDA 342 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE-CGG
T ss_pred ccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC-chH
Confidence 34456888999999998654 6765210001355 999 9999988899999999976655444 578
Q ss_pred CCCCCCCcEEEC-CCCccccc-----------------------------------------------------------
Q 010041 97 FSCFPNLQYLDL-GSNNLSGS----------------------------------------------------------- 116 (519)
Q Consensus 97 ~~~l~~L~~L~l-~~n~~~~~----------------------------------------------------------- 116 (519)
++.+++|++|+| ++|.++|.
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 999999999999 77755443
Q ss_pred -----------------cchhhcCCCCCCEEEcccCcCCc-----------------cCCcccc--CCCCCCEEEccCCC
Q 010041 117 -----------------IPSQIDSLSNLTYIYLYENNLTG-----------------TIPKEIG--SLRNLEVLDLGSNN 160 (519)
Q Consensus 117 -----------------~~~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~L~~n~ 160 (519)
+|..++++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~ 502 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence 78889999999999999999998 3899988 99999999999999
Q ss_pred CCccCCccccCCCCCCEEEccCCc-Ccc-cCchhccCCC-------CCCEEeccCCcCCCCCCc--ccCCcCccCeeeCC
Q 010041 161 LNGTIPIEIGSVRNLETLSLDGNK-LSG-TIPIEIESLR-------NLQWLDLSSNKLSGTIPK--EIGSLRNLKELDLS 229 (519)
Q Consensus 161 l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~ 229 (519)
+.+.+|..++++++|++|++++|+ +++ .+|..+++++ +|++|++++|.++ .+|. .++++++|++|+++
T Consensus 503 l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 999999999999999999999998 998 8888776665 9999999999999 8898 89999999999999
Q ss_pred CCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCC-cceeeccCccCcccCChhccCCCC--CCEEeccCCccc
Q 010041 230 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTN-IEYLSLGFNRFNGSIPREIVNLKN--LTSLSLGGNKLT 306 (519)
Q Consensus 230 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~ 306 (519)
+|.++ .+| .+..+++|+.|++++|.+. .+|..+.++++ |+.|++++|.+. .+|..+...+. |+.|++++|.+.
T Consensus 582 ~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp TSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 99999 778 8999999999999999998 88888999999 999999999998 78887776654 999999999998
Q ss_pred ccCCCCC---C--CCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCC--------CCCCcEEEcc
Q 010041 307 GHIPSTL---G--RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTK--------LSHLKYLNLS 373 (519)
Q Consensus 307 ~~~~~~l---~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~ 373 (519)
+.+|... . .+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|..+.. +++|++|+|+
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECC
Confidence 7665332 2 3458999999999998544444557889999999999888 55554433 2388899999
Q ss_pred CccCccccchhhh--cccCCCEEEccCCccccccccccccCCCCCEEEccC------Ccceeeeecce
Q 010041 374 SNLLSGQIPFAIG--KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNH------NSLNGKLAHTM 433 (519)
Q Consensus 374 ~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~~ 433 (519)
+|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.++...
T Consensus 737 ~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp SSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred CCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 99888 6777776 88889999999998887 788888888888888876 66666655443
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-40 Score=339.63 Aligned_cols=368 Identities=23% Similarity=0.283 Sum_probs=245.2
Q ss_pred CCCCCcce--eeeCCC---------CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCcccccc-chhhcCCCCCCE
Q 010041 62 SDHCGWVG--ITCDYE---------GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSI-PSQIDSLSNLTY 129 (519)
Q Consensus 62 ~~~C~w~g--v~c~~~---------~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~ 129 (519)
.+.|.|.+ +.|... .+++.|+++++.... +.+..|..+++|++|++++|.+.+.+ +..|.++++|++
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 34566554 777542 245556665443332 22445566666666666666555433 345566666666
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCcc--ccCCCCCCEEEccCCcCcccCchh-ccCCCCCCEEeccC
Q 010041 130 IYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGTIPIE-IESLRNLQWLDLSS 206 (519)
Q Consensus 130 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~ 206 (519)
|+|++|.+++..|..|+++++|++|++++|.+++..|.. +.++++|++|++++|++++..|.. +.++++|++|++++
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 666666666555666666666666666666665533333 555666666666666665554544 55666666666666
Q ss_pred CcCCCCCCcccCCc--CccCeeeCCCCcCCCcCChh--------hccCCCCceeecccccccCcCcccccCC---CCcce
Q 010041 207 NKLSGTIPKEIGSL--RNLKELDLSSNKLGGVLPQE--------IENLKSLTALSMDANNLGGPIPSTLFRL---TNIEY 273 (519)
Q Consensus 207 n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~--------l~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~ 273 (519)
|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 66665555555444 45666666666555433222 1234566666666666666555544332 56666
Q ss_pred eeccCccCcccC----------Chhcc--CCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCC
Q 010041 274 LSLGFNRFNGSI----------PREIV--NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFS 341 (519)
Q Consensus 274 L~l~~n~~~~~~----------~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 341 (519)
|++++|...+.. +..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 666665433211 11111 235789999999999888888888999999999999999888888888899
Q ss_pred CCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEcc
Q 010041 342 ALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLN 421 (519)
Q Consensus 342 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 421 (519)
+|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 99999999999988888888889999999999999988888888899999999999999987777777889999999999
Q ss_pred CCcceeeee
Q 010041 422 HNSLNGKLA 430 (519)
Q Consensus 422 ~n~l~~~~~ 430 (519)
+|++++..+
T Consensus 404 ~N~l~~~~~ 412 (455)
T 3v47_A 404 TNPWDCSCP 412 (455)
T ss_dssp SSCBCCCTT
T ss_pred CCCcccCCC
Confidence 998887654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.8e-40 Score=345.88 Aligned_cols=145 Identities=26% Similarity=0.332 Sum_probs=127.1
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +.+..|..+++|++|++++|.+++..|.+|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 468899999766543 4456899999999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 221 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 221 (519)
+++|.+.+..+..++++++|++|++++|++++ .+|..++++++|++|++++|.+++..|..++.++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 99999987777889999999999999999986 5799999999999999999998876665554443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-39 Score=340.58 Aligned_cols=350 Identities=23% Similarity=0.276 Sum_probs=249.3
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
..++.|+++++.... +.+..|..+++|++|++++|.+.+..|.+|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 368888988766543 4466788999999999999999888888899999999999999999888888888999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccC--eeeCCCCcC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK--ELDLSSNKL 233 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l 233 (519)
+++|.+++..|..++++++|++|++++|++++..+..+..+++|++|++++|.+++..|..++.+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999988876667788888888888888888764333444577888888888777766565566666555 555555544
Q ss_pred CC---------------------------------------------------------------------------cCC
Q 010041 234 GG---------------------------------------------------------------------------VLP 238 (519)
Q Consensus 234 ~~---------------------------------------------------------------------------~~p 238 (519)
.+ ..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 43 333
Q ss_pred hhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCC-CCCCCC
Q 010041 239 QEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS-TLGRLT 317 (519)
Q Consensus 239 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~ 317 (519)
..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 33555667777777777666 5566666777777777777777666566666677777777777766644443 366677
Q ss_pred CCcEEeCcCCccccCC--chhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccch-hhhcccCCCEE
Q 010041 318 SLQILDLSSNQLHSSI--PLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPF-AIGKLFNLASL 394 (519)
Q Consensus 318 ~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L 394 (519)
+|++|++++|.+.+.. +..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+. .+..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 7777777777766544 45566677777777777777766666666677777777777766655433 35666667777
Q ss_pred EccCCccccccccccccCCCCCEEEccCCccee
Q 010041 395 DLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 395 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 427 (519)
++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 777777666666666666677777777766654
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-40 Score=351.68 Aligned_cols=330 Identities=20% Similarity=0.339 Sum_probs=283.8
Q ss_pred CCCCCCCCCCcEEECCCCccccc-----------------cchhhc--CCCCCCEEEcccCcCCccCCccccCCCCCCEE
Q 010041 94 RLNFSCFPNLQYLDLGSNNLSGS-----------------IPSQID--SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVL 154 (519)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 154 (519)
+..++.+++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..|+++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 45688899999999999999985 888988 99999999999999999999999999999999
Q ss_pred EccCCC-CCc-cCCccccCC------CCCCEEEccCCcCcccCch--hccCCCCCCEEeccCCcCCCCCCcccCCcCccC
Q 010041 155 DLGSNN-LNG-TIPIEIGSV------RNLETLSLDGNKLSGTIPI--EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK 224 (519)
Q Consensus 155 ~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 224 (519)
++++|. +++ .+|..++++ ++|++|++++|+++ .+|. .++++++|++|++++|.++|.+| .++.+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 999998 888 888888776 89999999999998 7888 89999999999999999998899 888999999
Q ss_pred eeeCCCCcCCCcCChhhccCCC-CceeecccccccCcCcccccCCC--CcceeeccCccCcccCChhcc-------CCCC
Q 010041 225 ELDLSSNKLGGVLPQEIENLKS-LTALSMDANNLGGPIPSTLFRLT--NIEYLSLGFNRFNGSIPREIV-------NLKN 294 (519)
Q Consensus 225 ~L~l~~n~l~~~~p~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~-------~~~~ 294 (519)
+|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+.... +|+.|++++|.+.+..|..+. .+++
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 9999999988 77888889998 999999999988 7787776654 899999999999988888777 7778
Q ss_pred CCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCch-hhcCC-------CCCCEEECcCCcCcccCCCCCC--CC
Q 010041 295 LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL-VIGNF-------SALSYLDLSDNRICGIIPDELT--KL 364 (519)
Q Consensus 295 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~l 364 (519)
|++|++++|.+.+..+..+..+++|++|++++|.+. .+|. .+... ++|++|++++|+++ .+|..+. .+
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 999999999988443334556889999999999988 4443 33322 28999999999988 6777776 88
Q ss_pred CCCcEEEccCccCccccchhhhcccCCCEEEc------cCCccccccccccccCCCCCEEEccCCcceeeeec
Q 010041 365 SHLKYLNLSSNLLSGQIPFAIGKLFNLASLDL------SKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAH 431 (519)
Q Consensus 365 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 431 (519)
++|++|++++|.+++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|++++|++ +.++.
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 999999999999987 8888889999999999 56778888999999999999999999988 55544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-38 Score=334.22 Aligned_cols=353 Identities=22% Similarity=0.227 Sum_probs=213.7
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +.+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 357777887654432 3356678888888888888888877777888888888888888888776666777888888888
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCC--EEeccCCcCCCC---------------------
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ--WLDLSSNKLSGT--------------------- 212 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~~--------------------- 212 (519)
+++|.+.+..+..+..+++|++|++++|++++..|..++.+++|+ .|++++|.+.+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 888877764333444477777777777777665555555555555 444444443322
Q ss_pred ------------------------------------------------------CCcccCCcCccCeeeCCCCcCCCcCC
Q 010041 213 ------------------------------------------------------IPKEIGSLRNLKELDLSSNKLGGVLP 238 (519)
Q Consensus 213 ------------------------------------------------------~p~~l~~l~~L~~L~l~~n~l~~~~p 238 (519)
.+..++.+++|++|++++|.++ .+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence 2222445566666666666665 445
Q ss_pred hhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccC---------------------------ChhccC
Q 010041 239 QEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSI---------------------------PREIVN 291 (519)
Q Consensus 239 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~---------------------------~~~l~~ 291 (519)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+ +..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 55666666666666666665555555555555555555555544333 334444
Q ss_pred CCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCch-hhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEE
Q 010041 292 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL-VIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYL 370 (519)
Q Consensus 292 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 370 (519)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 55555555555555544455555555555555555555544332 24555555666666665555555555556666666
Q ss_pred EccCccCccc---cchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcceeeee
Q 010041 371 NLSSNLLSGQ---IPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLA 430 (519)
Q Consensus 371 ~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 430 (519)
++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 6666665542 12345556666666666666666556666666666666666666655443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=333.45 Aligned_cols=352 Identities=25% Similarity=0.306 Sum_probs=265.0
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +....|..+++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 467888888665443 3356788899999999999998887788899999999999999999887778889999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcCcc----CeeeCCC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL----KELDLSS 230 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~~ 230 (519)
+++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99998886555568889999999999998876 468888889999999999888876666556555555 5555555
Q ss_pred CcCCCcC-------------------------------------------------------------------------
Q 010041 231 NKLGGVL------------------------------------------------------------------------- 237 (519)
Q Consensus 231 n~l~~~~------------------------------------------------------------------------- 237 (519)
|.+.+..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 5443222
Q ss_pred --------ChhhccCCCCceeecccccccCcCcccc------------------------------------------cC
Q 010041 238 --------PQEIENLKSLTALSMDANNLGGPIPSTL------------------------------------------FR 267 (519)
Q Consensus 238 --------p~~l~~~~~L~~L~l~~n~l~~~~~~~l------------------------------------------~~ 267 (519)
|..+..+++|+.|++++|.+.+ +|..+ ..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 2223334445555554444332 22111 35
Q ss_pred CCCcceeeccCccCcccC--ChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCc-hhhcCCCCCC
Q 010041 268 LTNIEYLSLGFNRFNGSI--PREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIP-LVIGNFSALS 344 (519)
Q Consensus 268 ~~~L~~L~l~~n~~~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~ 344 (519)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 677888888888877543 66777888888888888888765444 7778888888888888876655 4567788888
Q ss_pred EEECcCCcCcccCCCCCCCCCCCcEEEccCccCc-cccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCC
Q 010041 345 YLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLS-GQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 423 (519)
Q Consensus 345 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 423 (519)
+|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8888888888877888888888888888888887 567777888888888888888888777888888888888888888
Q ss_pred cceeeee
Q 010041 424 SLNGKLA 430 (519)
Q Consensus 424 ~l~~~~~ 430 (519)
++++...
T Consensus 505 ~l~~~~~ 511 (570)
T 2z63_A 505 QLKSVPD 511 (570)
T ss_dssp CCSCCCT
T ss_pred cCCCCCH
Confidence 8876544
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-39 Score=312.64 Aligned_cols=288 Identities=31% Similarity=0.500 Sum_probs=183.8
Q ss_pred CChhhHHHHHHHHHhccC---CCCCCCCCCCCCCCCCC--cceeeeCCC---CCEEEEEcCCCceecccCCCCCCCCCCC
Q 010041 32 NISIHVAASEIERQALLN---SGWWKDRIPQNTSDHCG--WVGITCDYE---GRITDIGLQKSNIKGELGRLNFSCFPNL 103 (519)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~C~--w~gv~c~~~---~~v~~l~l~~~~~~~~~~~~~~~~l~~L 103 (519)
+.+.+..|+..+|+++.+ ..+|.. ..++|. |.||.|+.. ++|+.|++
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~-----~~~~C~~~w~gv~C~~~~~~~~l~~L~L-------------------- 57 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDL-------------------- 57 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEE--------------------
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCC-----CCCCCcCCCcceEeCCCCCCceEEEEEC--------------------
Confidence 456788899999999864 456754 468998 999999753 45555554
Q ss_pred cEEECCCCcccc--ccchhhcCCCCCCEEEccc-CcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 104 QYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYE-NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 104 ~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+.++++|++|++
T Consensus 58 -----~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 58 -----SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp -----ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred -----CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 4455555 5555666666666666663 5565556666666666666666666665555655666666666666
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcC-ccCeeeCCCCcCCCcCChhhccCCCCceeecccccccC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 259 (519)
++|++++.+|..+.++++|++|++++|.+++.+|..++.++ +|++|++++|.+.+.+|..+..++ |+.|++++|.+.+
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 66666655666666666666666666666655666666555 666666666666655666665554 6666666666666
Q ss_pred cCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcC
Q 010041 260 PIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGN 339 (519)
Q Consensus 260 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 339 (519)
..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.. +.
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 6666666666666666666666544443 555666666666666666666666666666666666666666666654 55
Q ss_pred CCCCCEEECcCCc
Q 010041 340 FSALSYLDLSDNR 352 (519)
Q Consensus 340 ~~~L~~L~l~~n~ 352 (519)
+++|+.+++++|+
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 6666666666665
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-38 Score=323.38 Aligned_cols=331 Identities=22% Similarity=0.230 Sum_probs=291.1
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCcc--ccCCCCCCE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE--IGSLRNLEV 153 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~ 153 (519)
.+++.|++++......+++..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|.. |.++++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 468899999766554555678999999999999999999888999999999999999999999866555 899999999
Q ss_pred EEccCCCCCccCCcc-ccCCCCCCEEEccCCcCcccCchhccCC--CCCCEEeccCCcCCCCCCcc--------cCCcCc
Q 010041 154 LDLGSNNLNGTIPIE-IGSVRNLETLSLDGNKLSGTIPIEIESL--RNLQWLDLSSNKLSGTIPKE--------IGSLRN 222 (519)
Q Consensus 154 L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~--------l~~l~~ 222 (519)
|++++|.+.+..|.. +.++++|++|++++|++++..+..+.++ .+|+.|++++|.+.+..+.. +..+++
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 999999999887876 8899999999999999998888888776 78999999999998655433 336689
Q ss_pred cCeeeCCCCcCCCcCChhhccC---CCCceeecccccccCcC----------ccccc--CCCCcceeeccCccCcccCCh
Q 010041 223 LKELDLSSNKLGGVLPQEIENL---KSLTALSMDANNLGGPI----------PSTLF--RLTNIEYLSLGFNRFNGSIPR 287 (519)
Q Consensus 223 L~~L~l~~n~l~~~~p~~l~~~---~~L~~L~l~~n~l~~~~----------~~~l~--~~~~L~~L~l~~n~~~~~~~~ 287 (519)
|++|++++|.+.+..|..+... ++|+.|++++|...+.. +..+. ..++|+.|++++|.+.+..|.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 9999999999998888776554 88999999988654431 11122 236899999999999999999
Q ss_pred hccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCC
Q 010041 288 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHL 367 (519)
Q Consensus 288 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 367 (519)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++..|..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 99999999999999999999889999999999999999999998888999999999999999999999999999999999
Q ss_pred cEEEccCccCccccchhhhcccCCCEEEccCCccccccc
Q 010041 368 KYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIP 406 (519)
Q Consensus 368 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 406 (519)
++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999998777778999999999999999998766
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.4e-39 Score=334.38 Aligned_cols=360 Identities=24% Similarity=0.301 Sum_probs=243.3
Q ss_pred CCcceeeeCCC------------CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEc
Q 010041 65 CGWVGITCDYE------------GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYL 132 (519)
Q Consensus 65 C~w~gv~c~~~------------~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 132 (519)
|.|.++ |+.. .+++.|+++++.... +.+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 777776 6421 368899999766543 33567899999999999999999888889999999999999
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCCCCc-cCCccccCCCCCCEEEccCCcCcccCc-hhccCCCCCCEEeccCCcCC
Q 010041 133 YENNLTGTIPKEIGSLRNLEVLDLGSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGTIP-IEIESLRNLQWLDLSSNKLS 210 (519)
Q Consensus 133 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~ 210 (519)
++|.+++..|..|+++++|++|++++|.+.+ ..|..++++++|++|++++|++.+.+| ..+.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999998777789999999999999999986 456789999999999999998555555 67999999999999999999
Q ss_pred CCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcC--ccc------------------------
Q 010041 211 GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI--PST------------------------ 264 (519)
Q Consensus 211 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~--~~~------------------------ 264 (519)
+..|..++.+++|++|++++|.+.......+..+++|+.|++++|.+.+.. +..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 888888887776666666666554322222234555555555555554320 000
Q ss_pred -----cc-----------------------------------------------------------CCCCcceeeccCcc
Q 010041 265 -----LF-----------------------------------------------------------RLTNIEYLSLGFNR 280 (519)
Q Consensus 265 -----l~-----------------------------------------------------------~~~~L~~L~l~~n~ 280 (519)
+. ..++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 00 01233444444444
Q ss_pred CcccCChhc-cCCCCCCEEeccCCcccccCC---CCCCCCCCCcEEeCcCCccccCCc--hhhcCCCCCCEEECcCCcCc
Q 010041 281 FNGSIPREI-VNLKNLTSLSLGGNKLTGHIP---STLGRLTSLQILDLSSNQLHSSIP--LVIGNFSALSYLDLSDNRIC 354 (519)
Q Consensus 281 ~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~ 354 (519)
+. .+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 33 344443 356677777777777665442 235566667777777776654322 34566666666666666666
Q ss_pred ccCCCCCCCCCCCcEEEccCccCccccchh------------------hhcccCCCEEEccCCccccccccccccCCCCC
Q 010041 355 GIIPDELTKLSHLKYLNLSSNLLSGQIPFA------------------IGKLFNLASLDLSKNKLSGSIPTEIGNCSELR 416 (519)
Q Consensus 355 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 416 (519)
.+|..+..+++|++|++++|.+++ ++.. ...+++|++|++++|+++ .+|. ...+++|+
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~ 476 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL 476 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred -cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence 455555555555555555555442 1111 125667777777777776 4554 45677777
Q ss_pred EEEccCCcceeeeec
Q 010041 417 NLTLNHNSLNGKLAH 431 (519)
Q Consensus 417 ~L~l~~n~l~~~~~~ 431 (519)
.|++++|++++..+.
T Consensus 477 ~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 477 VMKISRNQLKSVPDG 491 (549)
T ss_dssp EEECCSSCCCCCCTT
T ss_pred EEecCCCccCCcCHH
Confidence 777777777765443
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-38 Score=333.29 Aligned_cols=348 Identities=20% Similarity=0.237 Sum_probs=281.6
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +.+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|+
T Consensus 56 ~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 56 SELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred ccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 468889998765443 3466789999999999999999988899999999999999999999987778899999999999
Q ss_pred ccCCCCCc-cCCccccCCCCCCEEEccCCcCcccCchhccCCCCCC----EEeccCCcCCCC------------------
Q 010041 156 LGSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ----WLDLSSNKLSGT------------------ 212 (519)
Q Consensus 156 L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~l~~n~l~~~------------------ 212 (519)
+++|.+.+ .+|..++++++|++|++++|++++..|..++.+++|+ +|++++|.+++.
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99999976 6788899999999999999988776554443322221 233222222211
Q ss_pred --------------------------------------------------------------------------------
Q 010041 213 -------------------------------------------------------------------------------- 212 (519)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (519)
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence
Q ss_pred -----CCcccCCcCccCeeeCCCCcCCCcCC--------------------hhhccCCCCceeecccccccCc--Ccccc
Q 010041 213 -----IPKEIGSLRNLKELDLSSNKLGGVLP--------------------QEIENLKSLTALSMDANNLGGP--IPSTL 265 (519)
Q Consensus 213 -----~p~~l~~l~~L~~L~l~~n~l~~~~p--------------------~~l~~~~~L~~L~l~~n~l~~~--~~~~l 265 (519)
+| .+..+++|++|++++|.+ +.+| ..+..+++|++|++++|.+++. ++..+
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred ccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 11 223333444444444444 2222 1344667888888888888765 47788
Q ss_pred cCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCC-CCCCCCCCCcEEeCcCCccccCCchhhcCCCCCC
Q 010041 266 FRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALS 344 (519)
Q Consensus 266 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 344 (519)
..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 899999999999999875 66788899999999999999998777 6888999999999999999998888899999999
Q ss_pred EEECcCCcCcc-cCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCC
Q 010041 345 YLDLSDNRICG-IIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 423 (519)
Q Consensus 345 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 423 (519)
+|++++|++++ .+|..+..+++|++|++++|.+++..|..++.+++|++|++++|++++..|..+.++++|+.|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999999998 47888999999999999999999988999999999999999999999999999999999999999999
Q ss_pred ccee
Q 010041 424 SLNG 427 (519)
Q Consensus 424 ~l~~ 427 (519)
+++.
T Consensus 532 ~l~~ 535 (606)
T 3vq2_A 532 RIET 535 (606)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9984
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=344.90 Aligned_cols=289 Identities=21% Similarity=0.250 Sum_probs=210.7
Q ss_pred CCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCcccccc-chhhcCCCCCCEEEcccCcCCccCCc
Q 010041 65 CGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSI-PSQIDSLSNLTYIYLYENNLTGTIPK 143 (519)
Q Consensus 65 C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~p~ 143 (519)
|+|..|.+ ...+++.|+++.+.+.. +.+..|..+++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45777776 55678888888665543 34667888999999999988666555 67888899999999999998888888
Q ss_pred cccCCCCCCEEEccCCCCCccCCcc--ccCCCCCCEEEccCCcCcccCc-hhccCCCCCCEEeccCCcCCCCCCcccCCc
Q 010041 144 EIGSLRNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGTIP-IEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220 (519)
Q Consensus 144 ~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 220 (519)
.|.++++|++|+|++|.+.+.+|.. +.++++|++|++++|++++..+ ..|+++++|++|++++|.+++..+..++.+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8989999999999999888766655 8888899999999998876654 568888999999998888887766665544
Q ss_pred --CccCeeeCCCCcCCCcCChhhccC------------------------------------------------------
Q 010041 221 --RNLKELDLSSNKLGGVLPQEIENL------------------------------------------------------ 244 (519)
Q Consensus 221 --~~L~~L~l~~n~l~~~~p~~l~~~------------------------------------------------------ 244 (519)
++|+.|++++|.+.+..|..+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 444444444444443333222222
Q ss_pred --------------CCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCC
Q 010041 245 --------------KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP 310 (519)
Q Consensus 245 --------------~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 310 (519)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 456666666666666666666677777777777777776666677777777777777777776667
Q ss_pred CCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcc
Q 010041 311 STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICG 355 (519)
Q Consensus 311 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 355 (519)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 777777777777777777776666666777777777777776553
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-38 Score=339.78 Aligned_cols=342 Identities=20% Similarity=0.278 Sum_probs=296.6
Q ss_pred CCEEEEEcCCCceecc----------------cCCCCCC--CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCc-
Q 010041 76 GRITDIGLQKSNIKGE----------------LGRLNFS--CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN- 136 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~- 136 (519)
.+++.|+++++..... .-+..++ .+++|++|+|++|.+.+.+|..++++++|++|+|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 4688888886665541 0145555 99999999999999999999999999999999999998
Q ss_pred CCc-cCCccccCCC-------CCCEEEccCCCCCccCCc--cccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccC
Q 010041 137 LTG-TIPKEIGSLR-------NLEVLDLGSNNLNGTIPI--EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206 (519)
Q Consensus 137 ~~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 206 (519)
+++ .+|..+++++ +|++|++++|.++ .+|. .++++++|++|++++|+++ .+| .++++++|+.|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 998 7887666554 9999999999999 8898 8999999999999999998 888 899999999999999
Q ss_pred CcCCCCCCcccCCcCc-cCeeeCCCCcCCCcCChhhccCCC--CceeecccccccCcCcccc---c--CCCCcceeeccC
Q 010041 207 NKLSGTIPKEIGSLRN-LKELDLSSNKLGGVLPQEIENLKS--LTALSMDANNLGGPIPSTL---F--RLTNIEYLSLGF 278 (519)
Q Consensus 207 n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~p~~l~~~~~--L~~L~l~~n~l~~~~~~~l---~--~~~~L~~L~l~~ 278 (519)
|.++ .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . ..++|+.|++++
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 9999 88989999999 999999999998 67877776654 9999999999998766432 2 345899999999
Q ss_pred ccCcccCChhc-cCCCCCCEEeccCCcccccCCCCCCCC--------CCCcEEeCcCCccccCCchhhc--CCCCCCEEE
Q 010041 279 NRFNGSIPREI-VNLKNLTSLSLGGNKLTGHIPSTLGRL--------TSLQILDLSSNQLHSSIPLVIG--NFSALSYLD 347 (519)
Q Consensus 279 n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~l--------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ 347 (519)
|.+. .+|..+ ..+++|+.|++++|.+. .+|..+... ++|+.|++++|++. .+|..+. .+++|+.|+
T Consensus 683 N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 683 NEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp SCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred CcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 9998 566655 48899999999999998 555544332 38999999999999 6777776 899999999
Q ss_pred CcCCcCcccCCCCCCCCCCCcEEEccC------ccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEcc
Q 010041 348 LSDNRICGIIPDELTKLSHLKYLNLSS------NLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLN 421 (519)
Q Consensus 348 l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 421 (519)
+++|++++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|+++
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence 99999997 788899999999999976 888899999999999999999999999 78888876 699999999
Q ss_pred CCcceeee
Q 010041 422 HNSLNGKL 429 (519)
Q Consensus 422 ~n~l~~~~ 429 (519)
+|++...-
T Consensus 836 ~N~l~~i~ 843 (876)
T 4ecn_A 836 DNPNISID 843 (876)
T ss_dssp SCTTCEEE
T ss_pred CCCCCccC
Confidence 99987543
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-37 Score=331.23 Aligned_cols=350 Identities=28% Similarity=0.317 Sum_probs=246.7
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +++..|..+++|++|++++|.+++..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 478889998765543 3355688999999999999999988899999999999999999999966666799999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccC--CcCccCeeeCCCCcC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIG--SLRNLKELDLSSNKL 233 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~l~~n~l 233 (519)
+++|.+.+..|..++++++|++|++++|++++..|..++++++|++|++++|.+++..+..++ .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877777899999999999999999988888889999999999999999877666554 458899999999988
Q ss_pred CCcCChhhccC---------------------------CCCceeecccccccCcCcccccCCCC--cceeeccCccCccc
Q 010041 234 GGVLPQEIENL---------------------------KSLTALSMDANNLGGPIPSTLFRLTN--IEYLSLGFNRFNGS 284 (519)
Q Consensus 234 ~~~~p~~l~~~---------------------------~~L~~L~l~~n~l~~~~~~~l~~~~~--L~~L~l~~n~~~~~ 284 (519)
.+..|..+..+ ++|+.|++++|.+.+..|..+.+++. |++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 87777655543 44566666667666666666666543 77777777777776
Q ss_pred CChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccC-----Cc----hhhcCCCCCCEEECcCCcCcc
Q 010041 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS-----IP----LVIGNFSALSYLDLSDNRICG 355 (519)
Q Consensus 285 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-----~~----~~~~~~~~L~~L~l~~n~l~~ 355 (519)
.+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+. +| ..+..+++|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 667777777777777777777766666666666666666655443321 11 134455556666666665555
Q ss_pred cCCCCCCCCCCCcEEEccCc----------------------------cCccccchhhhcccCCCEEEccCCccccccc-
Q 010041 356 IIPDELTKLSHLKYLNLSSN----------------------------LLSGQIPFAIGKLFNLASLDLSKNKLSGSIP- 406 (519)
Q Consensus 356 ~~~~~~~~l~~L~~L~l~~n----------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 406 (519)
..+..+..+++|++|++++| .+++..|..+..+++|++|++++|++++.+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 55555555555554444443 3333334444455555555555555544333
Q ss_pred cccccCCCCCEEEccCCcce
Q 010041 407 TEIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 407 ~~l~~l~~L~~L~l~~n~l~ 426 (519)
..+..+++|+.|++++|++.
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEE
T ss_pred ccccCcccccEEecCCCCcc
Confidence 34445555555555555443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=323.80 Aligned_cols=339 Identities=23% Similarity=0.273 Sum_probs=228.5
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|+++++.... +.+..|..+++|++|++++|.+++..|..|+++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 467777777655443 22345777888888888888887777777888888888888888777 45554 678888888
Q ss_pred ccCCCCCc-cCCccccCCCCCCEEEccCCcCcccCchhccCCCCC--CEEeccCCcC--CCCCCcccCC-----------
Q 010041 156 LGSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL--QWLDLSSNKL--SGTIPKEIGS----------- 219 (519)
Q Consensus 156 L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~----------- 219 (519)
+++|.+++ .+|..++++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 88888776 467778888888888888887765 345666666 8888888877 5555555444
Q ss_pred ---------------cCccCeeeCCCCc-------CCCcCChhhcc---------------------------CCCCcee
Q 010041 220 ---------------LRNLKELDLSSNK-------LGGVLPQEIEN---------------------------LKSLTAL 250 (519)
Q Consensus 220 ---------------l~~L~~L~l~~n~-------l~~~~p~~l~~---------------------------~~~L~~L 250 (519)
+++|+.+++++|. +.+.+| .+.. .++|++|
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 3333344433332 111111 1111 2255666
Q ss_pred ecccccccCcCcccc-----cCCCCcceeeccCccCcccCC-hh-------------------------ccCCCCCCEEe
Q 010041 251 SMDANNLGGPIPSTL-----FRLTNIEYLSLGFNRFNGSIP-RE-------------------------IVNLKNLTSLS 299 (519)
Q Consensus 251 ~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~-------------------------l~~~~~L~~L~ 299 (519)
++++|.+.+.+|..+ .++++|+.+++++|.+ .+| .. ...+++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 666666666666655 4455555555444443 122 00 14677888888
Q ss_pred ccCCcccccCCCCCCCCCCCcEEeCcCCcccc--CCchhhcCCCCCCEEECcCCcCcccCCC-CCCCCCCCcEEEccCcc
Q 010041 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS--SIPLVIGNFSALSYLDLSDNRICGIIPD-ELTKLSHLKYLNLSSNL 376 (519)
Q Consensus 300 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~ 376 (519)
+++|.+.+..|..+..+++|++|++++|++.+ .+|..++.+++|++|++++|++++.+|. .+..+++|++|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 88888887777788888888888888888876 4556677888888888888888874444 36677788888888888
Q ss_pred CccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCccee
Q 010041 377 LSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 377 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 427 (519)
+++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++.
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 8776665443 57888888888877 667766678888888888887763
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=315.87 Aligned_cols=305 Identities=24% Similarity=0.269 Sum_probs=262.7
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
.++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 36899999999999988888999999999999999999988899999999999999999999866666688999999999
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccC
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 259 (519)
+++|++.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888899999999999999999998888889999999999999999988777788899999999999999888
Q ss_pred cCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcC
Q 010041 260 PIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGN 339 (519)
Q Consensus 260 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 339 (519)
..+..+..+++|+.|++++|...+.++.......+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 77778888888999999888877777776666678888888888887554456778888888888888888777777788
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccc
Q 010041 340 FSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGS 404 (519)
Q Consensus 340 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 404 (519)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88888888888888888788888888888888888888876666777788888888888887643
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-37 Score=320.36 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=62.7
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEc
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 156 (519)
+++.|+++++.... +++..|..+++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 45555555443322 22234555555555555555555555555555555555555555555 33333 4555555555
Q ss_pred cCCCCCc-cCCccccCCCCCCEEEccCCcCcccCchhccCCCCC--CEEeccCCcC
Q 010041 157 GSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL--QWLDLSSNKL 209 (519)
Q Consensus 157 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l 209 (519)
++|.+.+ .+|..++++++|++|++++|++++. .+..+++| ++|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 5555544 2334555555555555555555432 22333333 5555555555
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=338.16 Aligned_cols=353 Identities=25% Similarity=0.329 Sum_probs=264.6
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCcc--ccCCCCCCE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE--IGSLRNLEV 153 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~ 153 (519)
.+++.|+++++.....+.+..|..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|.. |.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 367788888765444555778999999999999999999888999999999999999999998866665 889999999
Q ss_pred EEccCCCCCccCC-ccccCCCCCCEEEccCCcCcccCchhccCC--CC------------------------------CC
Q 010041 154 LDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGTIPIEIESL--RN------------------------------LQ 200 (519)
Q Consensus 154 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~------------------------------L~ 200 (519)
|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 9999999987654 568899999999999998887766665544 33 55
Q ss_pred EEeccCCcCCCCCCcccCC--------------------------------------cCccCeeeCCCCcCCCcCChhhc
Q 010041 201 WLDLSSNKLSGTIPKEIGS--------------------------------------LRNLKELDLSSNKLGGVLPQEIE 242 (519)
Q Consensus 201 ~L~l~~n~l~~~~p~~l~~--------------------------------------l~~L~~L~l~~n~l~~~~p~~l~ 242 (519)
.|++++|.+++..+..+.. .++|++|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 5555555554443332211 15678888888888877788889
Q ss_pred cCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEE
Q 010041 243 NLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQIL 322 (519)
Q Consensus 243 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 322 (519)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 99999999999999999999999999999999999999998888999999999999999999998888889999999999
Q ss_pred eCcCCccccCC----------------------------------------chhhcCCCCCCEEECcCCcCcccCC----
Q 010041 323 DLSSNQLHSSI----------------------------------------PLVIGNFSALSYLDLSDNRICGIIP---- 358 (519)
Q Consensus 323 ~l~~n~l~~~~----------------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~---- 358 (519)
++++|.+++.. +..+..+++|++|++++|++++..+
T Consensus 368 ~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp EEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 99999876421 1123367778888888887764322
Q ss_pred --------------------------CCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccC
Q 010041 359 --------------------------DELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNC 412 (519)
Q Consensus 359 --------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 412 (519)
..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 2233444555555555555555555555555666666666665554444443
Q ss_pred CCCCEEEccCCcceeeee
Q 010041 413 SELRNLTLNHNSLNGKLA 430 (519)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~ 430 (519)
++|+.|++++|++++..+
T Consensus 526 ~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCCEEEEEEECCCCCCS
T ss_pred ccccEEECCCCcCCCCCh
Confidence 555666666665555443
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=319.89 Aligned_cols=331 Identities=22% Similarity=0.223 Sum_probs=284.4
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999888889999999999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCC-CCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCC----ceeecccc
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSG-TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL----TALSMDAN 255 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L----~~L~l~~n 255 (519)
++|++++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999987665579999999999999999987 579999999999999999999998888878777777 77777777
Q ss_pred cccCcCc-------------------------------------------------------------------------
Q 010041 256 NLGGPIP------------------------------------------------------------------------- 262 (519)
Q Consensus 256 ~l~~~~~------------------------------------------------------------------------- 262 (519)
.+.+..+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 6554332
Q ss_pred --------ccccCCCCcceeeccCccCcccCChhc------------------------------------------cCC
Q 010041 263 --------STLFRLTNIEYLSLGFNRFNGSIPREI------------------------------------------VNL 292 (519)
Q Consensus 263 --------~~l~~~~~L~~L~l~~n~~~~~~~~~l------------------------------------------~~~ 292 (519)
..+..+++|+.|++++|.+.+ +|..+ ..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 233445667777777666542 33221 356
Q ss_pred CCCCEEeccCCcccccC--CCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCC-CCCCCCCCCcE
Q 010041 293 KNLTSLSLGGNKLTGHI--PSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP-DELTKLSHLKY 369 (519)
Q Consensus 293 ~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 369 (519)
++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 78899999999887553 56778899999999999999875555 8899999999999999998766 57889999999
Q ss_pred EEccCccCccccchhhhcccCCCEEEccCCccc-cccccccccCCCCCEEEccCCcceeeeecce
Q 010041 370 LNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLS-GSIPTEIGNCSELRNLTLNHNSLNGKLAHTM 433 (519)
Q Consensus 370 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 433 (519)
|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..+...
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 999999999999999999999999999999998 5789999999999999999999997755443
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-36 Score=321.40 Aligned_cols=354 Identities=26% Similarity=0.326 Sum_probs=284.5
Q ss_pred CEEEEEcCCCceecccCCCCCCCCC--CCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEE
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFP--NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVL 154 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 154 (519)
.++.+++++..... ..+..+..++ +|++|++++|.+++..+..|+.+++|++|++++|.+.+..|..|.++++|++|
T Consensus 223 ~L~~L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 223 SIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCCEEECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCcccc-cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 46667776544332 2244566654 49999999999988888889999999999999999998888889999999999
Q ss_pred EccCCCCCc-----cCCc----cccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCC-C-cccCC--cC
Q 010041 155 DLGSNNLNG-----TIPI----EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTI-P-KEIGS--LR 221 (519)
Q Consensus 155 ~L~~n~l~~-----~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p-~~l~~--l~ 221 (519)
++++|...+ .+|. .+..+++|++|++++|++++..+..|.++++|++|++++|.+.... + ..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 998775543 2332 5778899999999999998888888889999999999988765332 1 22222 25
Q ss_pred ccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCc-ccccCCCCcceeeccCccCcccCChhccCCCCCCEEec
Q 010041 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP-STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300 (519)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 300 (519)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++ ..+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 78999999999988888888899999999999999887665 67788899999999999988877888888899999999
Q ss_pred cCCccc--ccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCC--------CCCCCCCCCcEE
Q 010041 301 GGNKLT--GHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP--------DELTKLSHLKYL 370 (519)
Q Consensus 301 ~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L 370 (519)
++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 998876 5678888889999999999999988777778889999999999998876422 236788899999
Q ss_pred EccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcceeeeec
Q 010041 371 NLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAH 431 (519)
Q Consensus 371 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 431 (519)
++++|.++...+..+..+++|++|++++|++++..+..+.++++|+.|++++|++++....
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 9999998854445688889999999999999877777778889999999999988865543
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=311.67 Aligned_cols=301 Identities=25% Similarity=0.255 Sum_probs=157.8
Q ss_pred CCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEecc
Q 010041 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205 (519)
Q Consensus 126 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 205 (519)
++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 45555555555555445555555555555555555554445555555555555555555554333344555555555555
Q ss_pred CCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccC
Q 010041 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSI 285 (519)
Q Consensus 206 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 285 (519)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.++++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 55555444445555555555555555555544445555555555555555555444444555555555555555555444
Q ss_pred ChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCC
Q 010041 286 PREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLS 365 (519)
Q Consensus 286 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 365 (519)
+..+..+++|++|++++|...+.++.......+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 44455555555555555554444444444444555555555555543334455555555555555555554444555555
Q ss_pred CCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcce
Q 010041 366 HLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 366 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 426 (519)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555554555555555555555555555444444555555555555555544
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-35 Score=294.82 Aligned_cols=313 Identities=24% Similarity=0.231 Sum_probs=275.7
Q ss_pred CCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCE
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET 177 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 177 (519)
..+++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34789999999999998766667899999999999999999888889999999999999999999888888999999999
Q ss_pred EEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 178 LSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 178 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
|++++|+++...+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999855555578999999999999999988888899999999999999999865 356789999999999987
Q ss_pred cCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhh
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 337 (519)
.+ +...++|++|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 64 33456899999999998854 332 357999999999999864 578899999999999999998888999
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCE
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRN 417 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 417 (519)
..+++|++|++++|++++ ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++. + +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 999999999999999986 4566778999999999999998 5677788999999999999999864 3 678899999
Q ss_pred EEccCCcceee
Q 010041 418 LTLNHNSLNGK 428 (519)
Q Consensus 418 L~l~~n~l~~~ 428 (519)
|++++|++...
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 99999998753
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-35 Score=310.92 Aligned_cols=313 Identities=24% Similarity=0.226 Sum_probs=278.8
Q ss_pred CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEE
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
.+++++.+++++|.+....+..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46889999999999987777788999999999999999998888899999999999999999998888889999999999
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
+|++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999666666799999999999999999888889999999999999999998753 567889999999999887
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhc
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG 338 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 338 (519)
+ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..++
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 3455689999999999875432 22 3689999999999986 36788999999999999999999899999
Q ss_pred CCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEE
Q 010041 339 NFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNL 418 (519)
Q Consensus 339 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 418 (519)
.+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.. +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 99999999999999997 4666788999999999999999 67888899999999999999998652 6778999999
Q ss_pred EccCCcceeee
Q 010041 419 TLNHNSLNGKL 429 (519)
Q Consensus 419 ~l~~n~l~~~~ 429 (519)
++++|++.+..
T Consensus 351 ~l~~N~~~~~~ 361 (597)
T 3oja_B 351 TLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCEEHHH
T ss_pred EeeCCCCCChh
Confidence 99999998653
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.1e-36 Score=310.52 Aligned_cols=335 Identities=21% Similarity=0.245 Sum_probs=268.8
Q ss_pred EEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 010041 80 DIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159 (519)
Q Consensus 80 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 159 (519)
.+++++..... ++ ..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~~-ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIH-VP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSS-CC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccc-cc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46666554442 22 2233 89999999999999888899999999999999999999888999999999999999999
Q ss_pred CCCccCCccccCCCCCCEEEccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcCcc--CeeeCCCCcC--C
Q 010041 160 NLNGTIPIEIGSVRNLETLSLDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL--KELDLSSNKL--G 234 (519)
Q Consensus 160 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~ 234 (519)
.++ .+|.. .+++|++|++++|++++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56665 89999999999999987 578899999999999999999986 356777888 9999999998 6
Q ss_pred CcCChhhcc--------------------------CCCCceeeccccc-------ccCcCcccccCC-------------
Q 010041 235 GVLPQEIEN--------------------------LKSLTALSMDANN-------LGGPIPSTLFRL------------- 268 (519)
Q Consensus 235 ~~~p~~l~~--------------------------~~~L~~L~l~~n~-------l~~~~~~~l~~~------------- 268 (519)
+..|..+.. +++|+.+++++|. +.+.++ .+..+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 666666554 5667777777665 333222 22222
Q ss_pred --------------CCcceeeccCccCcccCChhc-----cCCCCCCEEeccCCcc------------------------
Q 010041 269 --------------TNIEYLSLGFNRFNGSIPREI-----VNLKNLTSLSLGGNKL------------------------ 305 (519)
Q Consensus 269 --------------~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~l------------------------ 305 (519)
++|++|++++|.+.|.+|..+ ..+++|+.+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 356677777777777777766 5555555555554443
Q ss_pred --cccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcc--cCCCCCCCCCCCcEEEccCccCcccc
Q 010041 306 --TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICG--IIPDELTKLSHLKYLNLSSNLLSGQI 381 (519)
Q Consensus 306 --~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~ 381 (519)
.... ....+++|++|++++|.+.+..|..++.+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 2110 12678999999999999999889999999999999999999997 55677889999999999999999866
Q ss_pred chh-hhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcceeeee
Q 010041 382 PFA-IGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLA 430 (519)
Q Consensus 382 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 430 (519)
|.. +..+++|++|++++|++++..|..+. ++|+.|++++|+++ .++
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 654 77889999999999999988887765 79999999999998 443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-35 Score=311.56 Aligned_cols=351 Identities=26% Similarity=0.360 Sum_probs=256.5
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEc
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 156 (519)
.++.|+|+.+.+.. +++.+|..+++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 68899999876653 55678999999999999999999888889999999999999999999877788999999999999
Q ss_pred cCCCCCccCCccccCCCCCCEEEccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccC----eeeCCCC
Q 010041 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK----ELDLSSN 231 (519)
Q Consensus 157 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l~~n 231 (519)
++|.+++..+..|+++++|++|++++|++++ .+|..++.+++|++|++++|.+++..+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997777779999999999999999975 4678889999999999999998766555443322211 2222222
Q ss_pred cCC-----------------------------------------------------------------------------
Q 010041 232 KLG----------------------------------------------------------------------------- 234 (519)
Q Consensus 232 ~l~----------------------------------------------------------------------------- 234 (519)
.+.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 111
Q ss_pred --------------------------------------------------CcCC-------------------hhhccCC
Q 010041 235 --------------------------------------------------GVLP-------------------QEIENLK 245 (519)
Q Consensus 235 --------------------------------------------------~~~p-------------------~~l~~~~ 245 (519)
+..+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0000 0001233
Q ss_pred CCceeecccccccC--cCcccccCCCCcceeeccCcc-----------------------CcccC-ChhccCCCCCCEEe
Q 010041 246 SLTALSMDANNLGG--PIPSTLFRLTNIEYLSLGFNR-----------------------FNGSI-PREIVNLKNLTSLS 299 (519)
Q Consensus 246 ~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~-----------------------~~~~~-~~~l~~~~~L~~L~ 299 (519)
+|+.++++.|.+.. ..+.....+.+|+.+++..+. ..... +..+..+++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 44444444444321 122222233445555544443 22222 23455667777777
Q ss_pred ccCCcccccCCCCCCCCCCCcEEeCcCCccc-cCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCc
Q 010041 300 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLH-SSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLS 378 (519)
Q Consensus 300 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 378 (519)
++.|.+.+..+..+..+++++.|++++|.+. +..|..+..+++|++|++++|++++..|..|..+++|++|+|++|+++
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 8888777777777778888888888888744 345667778888888888888888888888888888888888888888
Q ss_pred cccchhhhcccCCCEEEccCCccccccccccccC-CCCCEEEccCCcceee
Q 010041 379 GQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNC-SELRNLTLNHNSLNGK 428 (519)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~ 428 (519)
+..+..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++...
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 7777788888888888888888888888888777 5788888888887643
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-36 Score=312.56 Aligned_cols=325 Identities=22% Similarity=0.278 Sum_probs=264.4
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
.++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 37999999999999988889999999999999999999998889999999999999999999987777799999999999
Q ss_pred ccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCC-cccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 180 LDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIP-KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 180 L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
+++|++++ ..|..++++++|++|++++|.+.+.+| ..++.+++|++|++++|.+.+..|..+..+++|++|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 456789999999999999999555655 6799999999999999999999999999999999999999987
Q ss_pred cCcCcccccCCCCcceeeccCccCcccC--Ch-----------------------------hccCC--------------
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSI--PR-----------------------------EIVNL-------------- 292 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~-----------------------------~l~~~-------------- 292 (519)
.......+..+++|++|++++|.+.+.. +. .+..+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 6433333456899999999999887631 00 00111
Q ss_pred ---------------------------------------------CCCCEEeccCCcccccCCCCC-CCCCCCcEEeCcC
Q 010041 293 ---------------------------------------------KNLTSLSLGGNKLTGHIPSTL-GRLTSLQILDLSS 326 (519)
Q Consensus 293 ---------------------------------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~ 326 (519)
++|+.|++++|.+. .+|..+ ..+++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 23444444444443 233333 3589999999999
Q ss_pred CccccCCch---hhcCCCCCCEEECcCCcCcccCC--CCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcc
Q 010041 327 NQLHSSIPL---VIGNFSALSYLDLSDNRICGIIP--DELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKL 401 (519)
Q Consensus 327 n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 401 (519)
|.+.+..|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 999986643 36789999999999999986432 45788999999999999998 6788888888999999998887
Q ss_pred ccc---ccc--------------ccccCCCCCEEEccCCcce
Q 010041 402 SGS---IPT--------------EIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 402 ~~~---~~~--------------~l~~l~~L~~L~l~~n~l~ 426 (519)
++. +|. .+..+++|+.|++++|+++
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC
Confidence 632 111 1236788999999999887
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-35 Score=296.86 Aligned_cols=307 Identities=31% Similarity=0.478 Sum_probs=190.4
Q ss_pred CCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCC
Q 010041 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 176 (519)
+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 137 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence 4455555555555555554322 5555555555555555553332 5555555555555555543221 45555555
Q ss_pred EEEccCCcCcccC-------------------chhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcC
Q 010041 177 TLSLDGNKLSGTI-------------------PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVL 237 (519)
Q Consensus 177 ~L~L~~n~l~~~~-------------------p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 237 (519)
+|++++|++.+.. ...+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc
Confidence 5555555544311 01255666666666666666532 23566666666777666666554
Q ss_pred ChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCC
Q 010041 238 PQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317 (519)
Q Consensus 238 p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 317 (519)
| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..++
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 287 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred c--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence 3 55666677777777666543 345666777777777777665433 6667777777777777765433 66677
Q ss_pred CCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEcc
Q 010041 318 SLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLS 397 (519)
Q Consensus 318 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 397 (519)
+|+.|++++|.+.+..+ ++.+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 77777777777765443 5667777777777777776544 56677777777777777754 356677777777777
Q ss_pred CCccccccccccccCCCCCEEEccCCccee
Q 010041 398 KNKLSGSIPTEIGNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 398 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 427 (519)
+|++++..| +..+++|+.|++++|++++
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777776665 6777777778887777765
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-35 Score=306.63 Aligned_cols=333 Identities=24% Similarity=0.268 Sum_probs=226.7
Q ss_pred EEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccC
Q 010041 79 TDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158 (519)
Q Consensus 79 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 158 (519)
+.+++++..... ++. .+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK-DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCT-TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCC-CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 667777655443 222 22 38999999999999988889999999999999999999998899999999999999999
Q ss_pred CCCCccCCccccCCCCCCEEEccCCcCcc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcCcc--CeeeCCCCcC--
Q 010041 159 NNLNGTIPIEIGSVRNLETLSLDGNKLSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL--KELDLSSNKL-- 233 (519)
Q Consensus 159 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l-- 233 (519)
|.++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 56765 89999999999999987 4568999999999999999999864 34455555 9999999988
Q ss_pred CCcCChhhccCC--------------------------------------------------------------------
Q 010041 234 GGVLPQEIENLK-------------------------------------------------------------------- 245 (519)
Q Consensus 234 ~~~~p~~l~~~~-------------------------------------------------------------------- 245 (519)
++..|..+..+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 666665554432
Q ss_pred -------------CCceeecccccccCcCcccc-----cCCCC--------------------------cceeeccCccC
Q 010041 246 -------------SLTALSMDANNLGGPIPSTL-----FRLTN--------------------------IEYLSLGFNRF 281 (519)
Q Consensus 246 -------------~L~~L~l~~n~l~~~~~~~l-----~~~~~--------------------------L~~L~l~~n~~ 281 (519)
+|++|++++|.+.+.+|..+ .+++. |+.|++++|.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 56667777777776666654 11111 22222322222
Q ss_pred cccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccC--CchhhcCCCCCCEEECcCCcCcccCCC
Q 010041 282 NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS--IPLVIGNFSALSYLDLSDNRICGIIPD 359 (519)
Q Consensus 282 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~ 359 (519)
.... ....+++|++|++++|.+.+..|..+..+++|+.|++++|++.+. .|..++.+++|++|++++|++++.+|.
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 1100 013455666666666666665666666666666666666666542 234455666666666666666653333
Q ss_pred -CCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcce
Q 010041 360 -ELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 360 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 426 (519)
.+..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 355556666666666666554443332 45666666666655 44554445666666666666655
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.9e-34 Score=279.92 Aligned_cols=307 Identities=27% Similarity=0.442 Sum_probs=255.3
Q ss_pred CCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCC
Q 010041 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 176 (519)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.. ++ .+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3467788899999888864 33 488889999999999988854 33 8889999999999998875 33 688899999
Q ss_pred EEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccc
Q 010041 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANN 256 (519)
Q Consensus 177 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~ 256 (519)
+|++++|++++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 999999988754 33 7889999999999987665554 48888999999999998876543 7888999999999998
Q ss_pred ccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchh
Q 010041 257 LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 336 (519)
Q Consensus 257 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 336 (519)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 876543 7788999999999998875433 7888999999999999986544 88899999999999999864 45
Q ss_pred hcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCC
Q 010041 337 IGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELR 416 (519)
Q Consensus 337 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 416 (519)
+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 78899999999999999864 457889999999999999999889999999999999999999998766 88999999
Q ss_pred EEEccCCcce
Q 010041 417 NLTLNHNSLN 426 (519)
Q Consensus 417 ~L~l~~n~l~ 426 (519)
.|++++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999875
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-33 Score=284.86 Aligned_cols=297 Identities=24% Similarity=0.278 Sum_probs=230.4
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.+++++..... .+.+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCccc---ChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 467888888765554 23688889999999999988874 3 78889999999999988864 3 78889999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
+++|.+++ +| ++.+++|++|++++|++++. + ++++++|++|++++|...+.+ .++.+++|++|++++|.+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99998886 44 78889999999999998863 3 778889999999998666665 47788899999999998887
Q ss_pred cCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCC
Q 010041 236 VLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315 (519)
Q Consensus 236 ~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 315 (519)
. | +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+..+..+..
T Consensus 185 l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 4 4 77888899999999988875 37788899999999999886 55 778889999999999888765444444
Q ss_pred CC-------CCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCC--------CCCCCCCCcEEEccCccCccc
Q 010041 316 LT-------SLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD--------ELTKLSHLKYLNLSSNLLSGQ 380 (519)
Q Consensus 316 l~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~ 380 (519)
+. +|+.+++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++++|++++.
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 33 44555666666555555 45678888888888876665543 245567788888888888873
Q ss_pred cchhhhcccCCCEEEccCCcccc
Q 010041 381 IPFAIGKLFNLASLDLSKNKLSG 403 (519)
Q Consensus 381 ~~~~~~~~~~L~~L~l~~n~l~~ 403 (519)
+ ++.+++|+.|++++|++++
T Consensus 334 -~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 334 -D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCCB
T ss_pred -c--cccCCcCcEEECCCCCCCC
Confidence 3 7778888888888888775
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-33 Score=283.34 Aligned_cols=302 Identities=22% Similarity=0.244 Sum_probs=257.0
Q ss_pred CCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCC
Q 010041 96 NFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNL 175 (519)
Q Consensus 96 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 175 (519)
.++.+++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 466789999999999999875 5 799999999999999999974 4 88999999999999999874 3 8899999
Q ss_pred CEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccc
Q 010041 176 ETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255 (519)
Q Consensus 176 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n 255 (519)
++|++++|++++ +| ++++++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 999999999986 44 88999999999999999974 3889999999999999766655 4778999999999999
Q ss_pred cccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCch
Q 010041 256 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 335 (519)
Q Consensus 256 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 335 (519)
.+++. | +..+++|+.|++++|.+++. .+..+++|++|++++|++.+ +| +..+++|+.|++++|++++..+.
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 99874 4 78899999999999999874 37889999999999999997 55 88999999999999999986544
Q ss_pred hhcCCC-------CCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccch--------hhhcccCCCEEEccCCc
Q 010041 336 VIGNFS-------ALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPF--------AIGKLFNLASLDLSKNK 400 (519)
Q Consensus 336 ~~~~~~-------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~~~L~~L~l~~n~ 400 (519)
.+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++++|+
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 333332 34455566666555555 46789999999999988776664 35667899999999999
Q ss_pred cccccccccccCCCCCEEEccCCccee
Q 010041 401 LSGSIPTEIGNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 401 l~~~~~~~l~~l~~L~~L~l~~n~l~~ 427 (519)
+++. + ++.+++|+.|++++|++++
T Consensus 330 l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 330 LTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred cccc-c--cccCCcCcEEECCCCCCCC
Confidence 9984 3 8899999999999999987
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-33 Score=272.30 Aligned_cols=303 Identities=25% Similarity=0.425 Sum_probs=260.2
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.+++.+..... .+.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + +.+.++++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred ccccEEEEeCCcccc---chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence 467888888665543 3458889999999999999986533 9999999999999999985 3 4699999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
+++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999854 33 8899999999999997665554 58999999999999999985543 8899999999999999986
Q ss_pred cCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCC
Q 010041 236 VLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315 (519)
Q Consensus 236 ~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 315 (519)
..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++.. . +..+++|++|++++|.+.+. ..+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 543 8899999999999999987654 788999999999999998643 3 88999999999999999864 46889
Q ss_pred CCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEE
Q 010041 316 LTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLD 395 (519)
Q Consensus 316 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 395 (519)
+++|++|++++|.+.+. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..| +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 99999999999999864 457889999999999999998888888999999999999999998766 88899999999
Q ss_pred ccCCccc
Q 010041 396 LSKNKLS 402 (519)
Q Consensus 396 l~~n~l~ 402 (519)
+++|.++
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999875
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.5e-33 Score=293.98 Aligned_cols=332 Identities=22% Similarity=0.263 Sum_probs=261.2
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
+++++|+|++|.+++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999999888889999999999999999999776777999999999999
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCC-CCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCc----eeecc--
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSG-TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT----ALSMD-- 253 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~----~L~l~-- 253 (519)
++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..+..+..+.+++ .++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998777789999999999999999976 4678889999999999999999876655443222111 11111
Q ss_pred --------------------------------------------------------------------------------
Q 010041 254 -------------------------------------------------------------------------------- 253 (519)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (519)
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence
Q ss_pred ---------------------------------------------cccccCcCc-------------------ccccCCC
Q 010041 254 ---------------------------------------------ANNLGGPIP-------------------STLFRLT 269 (519)
Q Consensus 254 ---------------------------------------------~n~l~~~~~-------------------~~l~~~~ 269 (519)
+|.+.+..+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 111110000 0011345
Q ss_pred CcceeeccCccCcc--cCChhcc-----------------------CCCCCCEEeccCCcccccC-CCCCCCCCCCcEEe
Q 010041 270 NIEYLSLGFNRFNG--SIPREIV-----------------------NLKNLTSLSLGGNKLTGHI-PSTLGRLTSLQILD 323 (519)
Q Consensus 270 ~L~~L~l~~n~~~~--~~~~~l~-----------------------~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 323 (519)
+|+.+++++|.+.. ..+..+. .+++|+.+++..+...... +..+..+++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 67777777776542 2333333 3445555555555443332 23466778888888
Q ss_pred CcCCccccCCchhhcCCCCCCEEECcCCcC-cccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccc
Q 010041 324 LSSNQLHSSIPLVIGNFSALSYLDLSDNRI-CGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLS 402 (519)
Q Consensus 324 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 402 (519)
++.|.+.+..+..+..++.+++|++++|.+ .+..|..+..+++|++|++++|++++..|..+..+++|++|+|++|+++
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 888888888888888899999999999974 4467788999999999999999999988999999999999999999999
Q ss_pred cccccccccCCCCCEEEccCCcceeeeecc
Q 010041 403 GSIPTEIGNCSELRNLTLNHNSLNGKLAHT 432 (519)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 432 (519)
+..|..+..+++|+.|++++|++++..+..
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 988889999999999999999998766543
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-32 Score=280.98 Aligned_cols=307 Identities=30% Similarity=0.463 Sum_probs=246.1
Q ss_pred CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEE
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+++..| +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 36789999999998874 45 48889999999999999996544 9999999999999999986554 8999999999
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCc--------------------ccCCcCccCeeeCCCCcCCCcCC
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK--------------------EIGSLRNLKELDLSSNKLGGVLP 238 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--------------------~l~~l~~L~~L~l~~n~l~~~~p 238 (519)
++++|++++..+ +.++++|++|++++|.+.+. +. .++.+++|++|++++|.+.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--
Confidence 999999986533 89999999999999988753 21 245667777777777777654
Q ss_pred hhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCC
Q 010041 239 QEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTS 318 (519)
Q Consensus 239 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 318 (519)
..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence 346777888888888887776554 56678888888888877643 457778888888888888876544 778888
Q ss_pred CcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccC
Q 010041 319 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSK 398 (519)
Q Consensus 319 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 398 (519)
|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++..| +..+++|++|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 8888888888886544 6778888999998888886544 7788889999999998887665 67888999999999
Q ss_pred CccccccccccccCCCCCEEEccCCcceeeee
Q 010041 399 NKLSGSIPTEIGNCSELRNLTLNHNSLNGKLA 430 (519)
Q Consensus 399 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 430 (519)
|++++. ..+..+++|+.|++++|++++..+
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 988865 467888999999999998877654
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.9e-34 Score=275.71 Aligned_cols=248 Identities=29% Similarity=0.468 Sum_probs=155.5
Q ss_pred CCCCEEEcccCcCCc--cCCccccCCCCCCEEEccC-CCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCE
Q 010041 125 SNLTYIYLYENNLTG--TIPKEIGSLRNLEVLDLGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 201 (519)
.+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888888877 7777788888888888874 7777777777777888888888888777777777777777777
Q ss_pred EeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCC-CCceeecccccccCcCcccccCCCCcceeeccCcc
Q 010041 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK-SLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280 (519)
Q Consensus 202 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 280 (519)
|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.+|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777777777777777777777777777766666666665 666666666666655555555554 5555555555
Q ss_pred CcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCC
Q 010041 281 FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDE 360 (519)
Q Consensus 281 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 360 (519)
+.+..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 5555555555555555555555555443332 344444444444444444444444444444444444444444444432
Q ss_pred CCCCCCCcEEEccCc
Q 010041 361 LTKLSHLKYLNLSSN 375 (519)
Q Consensus 361 ~~~l~~L~~L~l~~n 375 (519)
..+++|+.+++++|
T Consensus 288 -~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 288 -GNLQRFDVSAYANN 301 (313)
T ss_dssp -TTGGGSCGGGTCSS
T ss_pred -ccccccChHHhcCC
Confidence 33344444444443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5e-33 Score=277.69 Aligned_cols=310 Identities=20% Similarity=0.231 Sum_probs=264.8
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEc
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 156 (519)
.++.+++.+.... .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3455666554433 233445788999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCc
Q 010041 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV 236 (519)
Q Consensus 157 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 236 (519)
++|.+....+..+.++++|++|++++|++++..+..+.++++|++|++++|.+++. .++.+++|++|++++|.+.+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999854444468999999999999999988888899999999999999999864 356789999999999988743
Q ss_pred CChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCC
Q 010041 237 LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRL 316 (519)
Q Consensus 237 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 316 (519)
...++|+.|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 3456899999999998755 32 2357899999999999864 678999999999999999998889999999
Q ss_pred CCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEc
Q 010041 317 TSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDL 396 (519)
Q Consensus 317 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 396 (519)
++|++|++++|.+.+ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. + +..+++|++|++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 999999999999985 4556678999999999999998 4566678899999999999999854 3 678899999999
Q ss_pred cCCcccccc
Q 010041 397 SKNKLSGSI 405 (519)
Q Consensus 397 ~~n~l~~~~ 405 (519)
++|++....
T Consensus 347 ~~N~~~~~~ 355 (390)
T 3o6n_A 347 SHNDWDCNS 355 (390)
T ss_dssp CSSCEEHHH
T ss_pred CCCCccchh
Confidence 999998643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7e-33 Score=291.60 Aligned_cols=308 Identities=20% Similarity=0.236 Sum_probs=265.4
Q ss_pred EEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEcc
Q 010041 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLG 157 (519)
Q Consensus 78 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 157 (519)
++.+++.+.... .++...+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus 53 l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 344555543332 2344457789999999999999998888899999999999999999999888899999999999999
Q ss_pred CCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcC
Q 010041 158 SNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVL 237 (519)
Q Consensus 158 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 237 (519)
+|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++. .++.+++|+.|++++|.+.+
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE--
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc--
Confidence 9999965555579999999999999999998888999999999999999999865 25678899999999998875
Q ss_pred ChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCC
Q 010041 238 PQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 317 (519)
Q Consensus 238 p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 317 (519)
+...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..++
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ---ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 345568999999999987543322 3689999999999986 47789999999999999999999999999999
Q ss_pred CCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEcc
Q 010041 318 SLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLS 397 (519)
Q Consensus 318 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 397 (519)
+|+.|++++|.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++. + +..+++|++|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence 99999999999986 5666778999999999999998 5677788899999999999999864 3 6778899999999
Q ss_pred CCccccc
Q 010041 398 KNKLSGS 404 (519)
Q Consensus 398 ~n~l~~~ 404 (519)
+|++.+.
T Consensus 354 ~N~~~~~ 360 (597)
T 3oja_B 354 HNDWDCN 360 (597)
T ss_dssp SSCEEHH
T ss_pred CCCCCCh
Confidence 9998864
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.8e-32 Score=263.85 Aligned_cols=289 Identities=21% Similarity=0.307 Sum_probs=165.8
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
.+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35666776666665 3444332 46666666666666555556666666666666666666555666666666666666
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCC--CcCChhhccCCCCceeeccccccc
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG--GVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 666665 3443333 56666666666666444445566666666666666553 2334444444 5555555555544
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhc
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG 338 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 338 (519)
+ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 186 ~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 3 222221 3555555555555554445555555555555555555555444555
Q ss_pred CCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhc------ccCCCEEEccCCccc--cccccccc
Q 010041 339 NFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGK------LFNLASLDLSKNKLS--GSIPTEIG 410 (519)
Q Consensus 339 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~l~ 410 (519)
.+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+.. ...|+.|++++|++. +..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 5556666666666555 44555555666666666666655444333332 345777778877776 55667777
Q ss_pred cCCCCCEEEccCCc
Q 010041 411 NCSELRNLTLNHNS 424 (519)
Q Consensus 411 ~l~~L~~L~l~~n~ 424 (519)
.++.|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 77888888887763
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.5e-32 Score=264.63 Aligned_cols=275 Identities=24% Similarity=0.333 Sum_probs=207.2
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
.++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 478999999999999888889999999999999999999888999999999999999999998 5666655 8999999
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCC--CCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
+++|++++..+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 9999999777777999999999999999996 3667778877 99999999999986 454432 6888888888888
Q ss_pred cCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhh
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 337 (519)
.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 8777777777777888888777777666666777777777777777766 455556666666666666666654443333
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCc--cccchhhhcccCCCEEEccCCc
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLS--GQIPFAIGKLFNLASLDLSKNK 400 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~ 400 (519)
.... .......|+.+++++|.+. +..+..+..+++|+.+++++|+
T Consensus 285 ~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccc------------------cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2210 0001234566666666654 3445566666677777766653
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=261.61 Aligned_cols=291 Identities=20% Similarity=0.267 Sum_probs=173.0
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
..+++.++++++.++ .+|..+. +.|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 346778888877776 3444332 5777788887777766666777777788888877777766677777777777777
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC--cCChhhccCCCCceeecccccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG--VLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~~~~L~~L~l~~n~l 257 (519)
+++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 7777776 4454433 567777777777776555566677777777777776642 4455566666666666666665
Q ss_pred cCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhh
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 337 (519)
.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------~~ 236 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG------------------------SL 236 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT------------------------TG
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh------------------------hc
Confidence 53 222221 4455555555554444444444444555555555544444333 44
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhh------cccCCCEEEccCCcccc--cccccc
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIG------KLFNLASLDLSKNKLSG--SIPTEI 409 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~~L~~L~l~~n~l~~--~~~~~l 409 (519)
..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+. ....++.|++++|.+.. ..|..+
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 44445555555555444 3444444455555555555555443333332 13566777777777653 455667
Q ss_pred ccCCCCCEEEccCCc
Q 010041 410 GNCSELRNLTLNHNS 424 (519)
Q Consensus 410 ~~l~~L~~L~l~~n~ 424 (519)
..+..++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 777777778777763
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-31 Score=261.42 Aligned_cols=275 Identities=23% Similarity=0.310 Sum_probs=223.2
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
.++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 378999999999999888889999999999999999999888999999999999999999998 5666554 7999999
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCC--CCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG--TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
+++|++++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 99999998888889999999999999999964 667788999999999999999885 444432 7999999999999
Q ss_pred cCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhh
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 337 (519)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9988999999999999999999999887778999999999999999998 677788888999999999998886555444
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCcc--ccchhhhcccCCCEEEccCC
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSG--QIPFAIGKLFNLASLDLSKN 399 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n 399 (519)
.... .......++.+++++|.+.. ..|..+..+.+++.+++++|
T Consensus 284 ~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 284 CPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3210 00112344445555554431 23445555566666666655
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=8.5e-33 Score=268.60 Aligned_cols=274 Identities=23% Similarity=0.275 Sum_probs=166.9
Q ss_pred CChhhHHHHHHHHHhcc-C----CCCCCCCCCCCCCCCCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEE
Q 010041 32 NISIHVAASEIERQALL-N----SGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYL 106 (519)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-~----~~~w~~~~~~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L 106 (519)
....+..++..+|+.+. + ...|.... ....++|.|.|+.|+.... .......++++.|
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~-~~~~~~~~~~g~~~~~~~~----------------~l~~~~~~~l~~L 86 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRALKATAD----------------LLEDATQPGRVAL 86 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT-TTCTTSCCSHHHHHHHHHH----------------HHHHHTSTTCCEE
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccc-cccccccccCCcchhhhHH----------------HHhcccccceeEE
Confidence 34467889999998773 3 23453111 1246889999999952100 0001123566777
Q ss_pred ECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCc
Q 010041 107 DLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLS 186 (519)
Q Consensus 107 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 186 (519)
++++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|++.
T Consensus 87 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred EccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 77777776 56666777777777777777777 67777777777777777777776 66777777777777777777777
Q ss_pred ccCchhccC---------CCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 187 GTIPIEIES---------LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 187 ~~~p~~l~~---------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc
Confidence 677765543 666666666666665 555556666666666666666553 333455555555555555555
Q ss_pred cCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCC
Q 010041 258 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 327 (519)
Q Consensus 258 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 327 (519)
.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5555555555555555555555555555555555555555555555555455555555555555544433
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.5e-30 Score=258.57 Aligned_cols=284 Identities=27% Similarity=0.381 Sum_probs=145.5
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|++|++++|.+++. +.. .++|++|++++|.+++ +| .|+++++|++|++++|.+++ +|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEEC
Confidence 4555555555555431 110 1456666666665554 44 35556666666666665553 33322 35566666
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCc
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 260 (519)
++|++++ +| .++++++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .+..+++|++|++++|.+.+
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~- 251 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT- 251 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-
Confidence 6666554 34 45556666666666665553 3321 135566666666555 344 25556666666666665553
Q ss_pred CcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCC
Q 010041 261 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 340 (519)
Q Consensus 261 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 340 (519)
+|.. .++|+.|++++|.+.+ +|.. +++|++|++++|.+.+. +.. .++|+.|++++|.+.+. + .+
T Consensus 252 l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~ 315 (454)
T 1jl5_A 252 LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DL 315 (454)
T ss_dssp CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CC
T ss_pred cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CC
Confidence 2221 2455666666665553 3332 24566666666665542 111 14566666666666531 1 12
Q ss_pred -CCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcccc--ccccccccC-----
Q 010041 341 -SALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSG--SIPTEIGNC----- 412 (519)
Q Consensus 341 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l----- 412 (519)
++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+.++
T Consensus 316 ~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 366677777766664 3433 3566777777776663 444 35667777777777766 566666655
Q ss_pred --------CCCCEEEccCCccee
Q 010041 413 --------SELRNLTLNHNSLNG 427 (519)
Q Consensus 413 --------~~L~~L~l~~n~l~~ 427 (519)
++|+.|++++|++++
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------------
T ss_pred ccccccccCcCCEEECCCCcCCc
Confidence 566666666666665
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.1e-34 Score=294.45 Aligned_cols=352 Identities=19% Similarity=0.182 Sum_probs=269.4
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCcccc----ccchhhcCCCCCCEEEcccCcCCccCCccc-cCCC--
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSG----SIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLR-- 149 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~-- 149 (519)
+++.|++++...........+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 467777775543321111226678899999999999875 356778889999999999999876444333 3455
Q ss_pred --CCCEEEccCCCCCc----cCCccccCCCCCCEEEccCCcCcccCchhcc-----CCCCCCEEeccCCcCCCCC----C
Q 010041 150 --NLEVLDLGSNNLNG----TIPIEIGSVRNLETLSLDGNKLSGTIPIEIE-----SLRNLQWLDLSSNKLSGTI----P 214 (519)
Q Consensus 150 --~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~~----p 214 (519)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 79999999999874 5577888999999999999998755444332 3568999999999988643 4
Q ss_pred cccCCcCccCeeeCCCCcCCCcCChhhc-----cCCCCceeecccccccCc----CcccccCCCCcceeeccCccCcccC
Q 010041 215 KEIGSLRNLKELDLSSNKLGGVLPQEIE-----NLKSLTALSMDANNLGGP----IPSTLFRLTNIEYLSLGFNRFNGSI 285 (519)
Q Consensus 215 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~~~~~~ 285 (519)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 5566779999999999988765444443 356999999999998864 4667778899999999999887532
Q ss_pred -----ChhccCCCCCCEEeccCCccccc----CCCCCCCCCCCcEEeCcCCccccCCchhhcC-----CCCCCEEECcCC
Q 010041 286 -----PREIVNLKNLTSLSLGGNKLTGH----IPSTLGRLTSLQILDLSSNQLHSSIPLVIGN-----FSALSYLDLSDN 351 (519)
Q Consensus 286 -----~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n 351 (519)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 22233578999999999998864 4666677899999999999987654443332 369999999999
Q ss_pred cCccc----CCCCCCCCCCCcEEEccCccCccccchhhhc-----ccCCCEEEccCCcccc----ccccccccCCCCCEE
Q 010041 352 RICGI----IPDELTKLSHLKYLNLSSNLLSGQIPFAIGK-----LFNLASLDLSKNKLSG----SIPTEIGNCSELRNL 418 (519)
Q Consensus 352 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L 418 (519)
.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|+.|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 98865 4455667789999999999998765555543 6799999999999987 778888899999999
Q ss_pred EccCCcceee
Q 010041 419 TLNHNSLNGK 428 (519)
Q Consensus 419 ~l~~n~l~~~ 428 (519)
++++|++++.
T Consensus 404 ~l~~N~i~~~ 413 (461)
T 1z7x_W 404 DLSNNCLGDA 413 (461)
T ss_dssp ECCSSSCCHH
T ss_pred ECCCCCCCHH
Confidence 9999987743
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=8.8e-29 Score=250.72 Aligned_cols=306 Identities=27% Similarity=0.394 Sum_probs=218.3
Q ss_pred CCEEEEEcCCCceecccCCCCCCCC-CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCF-PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVL 154 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 154 (519)
..++.++++++.... +..+ ++|++|++++|.+++ +| .++++++|++|++++|.+++ +|..+ ++|++|
T Consensus 111 ~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEE
T ss_pred CCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEE
Confidence 356666666544332 2222 699999999999986 67 69999999999999999985 66543 599999
Q ss_pred EccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCC
Q 010041 155 DLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG 234 (519)
Q Consensus 155 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 234 (519)
++++|.+++ +| .++++++|++|++++|++++ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|.++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 999999986 56 69999999999999999986 5533 368999999999998 677 4899999999999999998
Q ss_pred CcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCC
Q 010041 235 GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 314 (519)
Q Consensus 235 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 314 (519)
+ +|. .+++|+.|++++|.+.+ +|.. .++|++|++++|.+++ ++. -.++|++|++++|.+.+. +.
T Consensus 251 ~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i-~~--- 314 (454)
T 1jl5_A 251 T-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL-CD--- 314 (454)
T ss_dssp S-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE-CC---
T ss_pred c-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcc-cC---
Confidence 6 443 34799999999999986 4543 4789999999999986 222 126899999999999863 21
Q ss_pred CCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCcc--ccchhhhcc----
Q 010041 315 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSG--QIPFAIGKL---- 388 (519)
Q Consensus 315 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~---- 388 (519)
..++|++|++++|++.+ +|.. +++|++|++++|++++ +|. .+++|++|++++|.+++ .+|..++.+
T Consensus 315 ~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~ 386 (454)
T 1jl5_A 315 LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 386 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC
T ss_pred CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcc
Confidence 12589999999999986 4543 6899999999999984 565 46899999999999998 788888877
Q ss_pred ---------cCCCEEEccCCcccc--ccccccccCCCCCEEEccCCcceeeeec
Q 010041 389 ---------FNLASLDLSKNKLSG--SIPTEIGNCSELRNLTLNHNSLNGKLAH 431 (519)
Q Consensus 389 ---------~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 431 (519)
++|++|++++|++++ .+|.. ++.|.+.+|.+.+.+..
T Consensus 387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 387 HLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------------------------------------------------------
T ss_pred cccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 889999999999997 66654 45667788877665543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-32 Score=280.61 Aligned_cols=328 Identities=21% Similarity=0.203 Sum_probs=263.2
Q ss_pred CCCCcEEECCCCccccccch-hhcCCCCCCEEEcccCcCCc----cCCccccCCCCCCEEEccCCCCCccCCccc-cCCC
Q 010041 100 FPNLQYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTG----TIPKEIGSLRNLEVLDLGSNNLNGTIPIEI-GSVR 173 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~ 173 (519)
.++|++|++++++++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999999765433 48889999999999999885 356778889999999999999876444333 2344
Q ss_pred ----CCCEEEccCCcCcc----cCchhccCCCCCCEEeccCCcCCCCCCcccC-----CcCccCeeeCCCCcCCCcC---
Q 010041 174 ----NLETLSLDGNKLSG----TIPIEIESLRNLQWLDLSSNKLSGTIPKEIG-----SLRNLKELDLSSNKLGGVL--- 237 (519)
Q Consensus 174 ----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~~--- 237 (519)
+|++|++++|+++. .++..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999984 5688899999999999999998754443332 3568999999999988743
Q ss_pred -ChhhccCCCCceeecccccccCcCccccc-----CCCCcceeeccCccCccc----CChhccCCCCCCEEeccCCcccc
Q 010041 238 -PQEIENLKSLTALSMDANNLGGPIPSTLF-----RLTNIEYLSLGFNRFNGS----IPREIVNLKNLTSLSLGGNKLTG 307 (519)
Q Consensus 238 -p~~l~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~ 307 (519)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 56677789999999999998765544443 367999999999998863 57778889999999999999875
Q ss_pred cC-----CCCCCCCCCCcEEeCcCCccccC----CchhhcCCCCCCEEECcCCcCcccCCCCCC-----CCCCCcEEEcc
Q 010041 308 HI-----PSTLGRLTSLQILDLSSNQLHSS----IPLVIGNFSALSYLDLSDNRICGIIPDELT-----KLSHLKYLNLS 373 (519)
Q Consensus 308 ~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~ 373 (519)
.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 42 23334689999999999999864 566777899999999999998764333222 23699999999
Q ss_pred CccCccc----cchhhhcccCCCEEEccCCcccccccccccc-----CCCCCEEEccCCccee
Q 010041 374 SNLLSGQ----IPFAIGKLFNLASLDLSKNKLSGSIPTEIGN-----CSELRNLTLNHNSLNG 427 (519)
Q Consensus 374 ~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~ 427 (519)
+|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 9999876 5667778899999999999998876665543 6799999999999985
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.3e-29 Score=240.63 Aligned_cols=281 Identities=24% Similarity=0.274 Sum_probs=159.6
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCc--cCCccccCCCCCCEEEcc
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG--TIPIEIGSVRNLETLSLD 181 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~ 181 (519)
+.++.++++++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555554 2333222 456666666665553333345555666666666555542 123344445555555555
Q ss_pred CCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcC
Q 010041 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 182 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
+|.++ .+|..+.++++|++|++++|.+++..+ ...+..+++|++|++++|.+.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccc
Confidence 55554 234445555555555555555443322 023444444444555444444444
Q ss_pred cccccCCCCcceeeccCccCcc-cCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCC
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNG-SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 340 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 340 (519)
+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 4445555555555555555554 455666667777777777777776667777777777777777777776666667777
Q ss_pred CCCCEEECcCCcCcccCCCCCCCC-CCCcEEEccCccCccccc--hhhhcccCCCEEEccCCcccccccccccc
Q 010041 341 SALSYLDLSDNRICGIIPDELTKL-SHLKYLNLSSNLLSGQIP--FAIGKLFNLASLDLSKNKLSGSIPTEIGN 411 (519)
Q Consensus 341 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 411 (519)
++|++|++++|++++..+..+..+ ++|++|++++|.+++... .....+...+.+.+..+.+....|..+.+
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 788888888888877777777776 377788888777765321 11122223333444445555555555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=246.74 Aligned_cols=256 Identities=20% Similarity=0.246 Sum_probs=163.3
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57888888888877665667777888888888888777766777777777777777777777544444677777777777
Q ss_pred cCCcCcccCc-hhccCCCCCCEEeccCCc-CCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 181 DGNKLSGTIP-IEIESLRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 181 ~~n~l~~~~p-~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++|++++..+ ..+.++++|++|++++|. +....+..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 7777764322 356677777777777763 44444555666666666666666666655656666666666666655553
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCC---CCCCCCcEEeCcCCcccc----
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTL---GRLTSLQILDLSSNQLHS---- 331 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~---- 331 (519)
...+..+..++ +|++|++++|.+.+..+..+ .....++.++++++.+.+
T Consensus 212 ~~~~~~~~~~~------------------------~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 212 LLLEIFVDVTS------------------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp THHHHHHHHTT------------------------TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cchhhhhhhcc------------------------cccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 22222222344 44455555544443322221 234556677777776654
Q ss_pred CCchhhcCCCCCCEEECcCCcCcccCCCC-CCCCCCCcEEEccCccCcccc
Q 010041 332 SIPLVIGNFSALSYLDLSDNRICGIIPDE-LTKLSHLKYLNLSSNLLSGQI 381 (519)
Q Consensus 332 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 381 (519)
.+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|.+++..
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 356667778888888888888874 4443 567777777777777776543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-29 Score=244.70 Aligned_cols=252 Identities=24% Similarity=0.313 Sum_probs=207.3
Q ss_pred CCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCc--cCC
Q 010041 65 CGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTG--TIP 142 (519)
Q Consensus 65 C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~p 142 (519)
|.|.++.|...+ ++.+ +. .-.++|++|++++|.++...+..|.++++|++|++++|.++. ..|
T Consensus 7 C~~~~l~c~~~~-l~~i------------p~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSKG-LTSV------------PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSSC-CSSC------------CS--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCCC-cccC------------CC--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 689899996432 2111 11 223689999999999986655678999999999999999883 346
Q ss_pred ccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCc-hhccCCCCCCEEeccCCcCCCCCCcccCCcC
Q 010041 143 KEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIP-IEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 221 (519)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 221 (519)
..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+.+..+..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 77778999999999999987 567779999999999999999986654 5788999999999999999988888889999
Q ss_pred ccCeeeCCCCcCCC-cCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEec
Q 010041 222 NLKELDLSSNKLGG-VLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 300 (519)
Q Consensus 222 ~L~~L~l~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 300 (519)
+|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 99999999999886 57778888889999999999888877888888888888888888888766667777888888888
Q ss_pred cCCcccccCCCCCCCCC-CCcEEeCcCCccccC
Q 010041 301 GGNKLTGHIPSTLGRLT-SLQILDLSSNQLHSS 332 (519)
Q Consensus 301 ~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 332 (519)
++|.+.+..+..+..++ +|++|++++|.+.+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888877777777774 788888888887654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=244.77 Aligned_cols=280 Identities=21% Similarity=0.256 Sum_probs=185.8
Q ss_pred CCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEe
Q 010041 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLD 203 (519)
Q Consensus 124 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 203 (519)
|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 445555677777776 4555443 4677777777777655555677777777777777777766666677777777777
Q ss_pred ccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCC-hhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCc
Q 010041 204 LSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP-QEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282 (519)
Q Consensus 204 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 282 (519)
+++|.+++..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++|. .+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------~~~ 163 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------TFT 163 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------SCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------ccc
Confidence 77777664433346666666666666666654322 244455555555555442 233
Q ss_pred ccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCC
Q 010041 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELT 362 (519)
Q Consensus 283 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 362 (519)
+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|++++..+..+.
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 33344555566666666666666666666666777777777777776543333445577777777777777765443332
Q ss_pred ---CCCCCcEEEccCccCcc----ccchhhhcccCCCEEEccCCccccccccc-cccCCCCCEEEccCCcceeeee
Q 010041 363 ---KLSHLKYLNLSSNLLSG----QIPFAIGKLFNLASLDLSKNKLSGSIPTE-IGNCSELRNLTLNHNSLNGKLA 430 (519)
Q Consensus 363 ---~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 430 (519)
....++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+...
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 35678888888888776 46778899999999999999999 45555 5899999999999999886543
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.2e-29 Score=240.50 Aligned_cols=236 Identities=22% Similarity=0.314 Sum_probs=183.6
Q ss_pred CCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEE
Q 010041 123 SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWL 202 (519)
Q Consensus 123 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 202 (519)
..+++++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|+++ .+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888889999999999999998 88988999999999999999998 788899999999999
Q ss_pred eccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCc
Q 010041 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282 (519)
Q Consensus 203 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 282 (519)
++++|.+.+.+|..++.. . .+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc------c---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999998888888765531 0 1123455666666666666666 55666666777777777777766
Q ss_pred ccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCC
Q 010041 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELT 362 (519)
Q Consensus 283 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 362 (519)
+ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 3 555677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCcEEEccCccCc
Q 010041 363 KLSHLKYLNLSSNLLS 378 (519)
Q Consensus 363 ~l~~L~~L~l~~n~l~ 378 (519)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 7777777777766544
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.2e-27 Score=241.35 Aligned_cols=228 Identities=23% Similarity=0.237 Sum_probs=186.3
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
+++++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999999888889999999999999999999888889999999999999999998766667888999999999
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCCCC-cccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP-KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 259 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 259 (519)
++|++++..+..|.++++|++|++++|...+.++ ..+..+++|++|++++|.+++. | .+..+++|+.|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9999987777788899999999999855444444 4578888899999998888754 3 46677788888888888877
Q ss_pred cCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccc
Q 010041 260 PIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 330 (519)
Q Consensus 260 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 330 (519)
..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777888888777777776777777777777777777777666666677777777777777765
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.4e-28 Score=232.83 Aligned_cols=205 Identities=27% Similarity=0.279 Sum_probs=110.8
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCC-CCccCCccccCCCCCCEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN-LNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 178 (519)
.++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666666665555566666666666666666665556666666666666666665 544445556666666666
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++++|++++..|..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 66666666555555566666666666666665444444555555555555555555443334444444444444444444
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCc
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 304 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 304 (519)
+..|..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 4434444444444444444444333222233333333333333333
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.5e-28 Score=229.90 Aligned_cols=224 Identities=26% Similarity=0.275 Sum_probs=132.0
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (519)
+.++.++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666652 34322 356667777776666655556666666666666666666555666666666666666666
Q ss_pred c-CcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCc
Q 010041 184 K-LSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262 (519)
Q Consensus 184 ~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 262 (519)
. +....|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------- 155 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------- 155 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc---------------
Confidence 5 554445556666666666666666665555555555555555555555554444334444444
Q ss_pred ccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCC
Q 010041 263 STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 342 (519)
Q Consensus 263 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 342 (519)
++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 156 ---------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 156 ---------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp ---------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred ---------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44444444444333334555566666666666666555666666666666666666666555555666666
Q ss_pred CCEEECcCCcCc
Q 010041 343 LSYLDLSDNRIC 354 (519)
Q Consensus 343 L~~L~l~~n~l~ 354 (519)
|++|++++|.+.
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 666666666554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4e-27 Score=239.45 Aligned_cols=247 Identities=26% Similarity=0.266 Sum_probs=183.7
Q ss_pred CcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 103 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
.+.++.++.+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 356788877776 4554443 6899999999999988888899999999999999999888778888999999999999
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCc-CCCcCChhhccCCCCceeecccccccCcC
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK-LGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
|++++..+..|.++++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 99987766778889999999999999886666678888899999998854 4433344577778888888888877643
Q ss_pred cccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCC
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFS 341 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 341 (519)
| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2 355666777777777776666666666666777777777666666666666666666666666666655555556666
Q ss_pred CCCEEECcCCcCc
Q 010041 342 ALSYLDLSDNRIC 354 (519)
Q Consensus 342 ~L~~L~l~~n~l~ 354 (519)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 6666666666543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6e-27 Score=237.34 Aligned_cols=246 Identities=24% Similarity=0.263 Sum_probs=176.8
Q ss_pred CcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 103 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
.+.++.++.+++ .+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 357788887776 4555443 6889999999999888888888999999999999988877777888899999999999
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCc-CCCcCChhhccCCCCceeecccccccCcC
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK-LGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
|++++..+..|..+++|++|++++|.+....+..+..+++|++|++++|+ +....+..+..+++|+.|++++|.++. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 98886666678888889999999888886666678888888888888854 333334467777778888887777763 2
Q ss_pred cccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCC
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFS 341 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 341 (519)
| .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 355566666666666666655556666666666666666666655555566666666666666666655555555556
Q ss_pred CCCEEECcCCcC
Q 010041 342 ALSYLDLSDNRI 353 (519)
Q Consensus 342 ~L~~L~l~~n~l 353 (519)
+|+.|++++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 666666666554
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=237.69 Aligned_cols=230 Identities=22% Similarity=0.250 Sum_probs=210.4
Q ss_pred CCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
.++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 37899999999999988889999999999999999999988888999999999999999999976666799999999999
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCCCCC-cccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP-KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
+++|++++..+..|.++++|++|++++|...+.++ ..+..+++|++|++++|.++.. | .+..+++|+.|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC
Confidence 99999998777789999999999999965544544 4688999999999999999854 4 4788999999999999999
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCcccc
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 331 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 331 (519)
+..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 9989999999999999999999999888899999999999999999998888888999999999999999864
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3e-29 Score=242.24 Aligned_cols=251 Identities=22% Similarity=0.258 Sum_probs=163.3
Q ss_pred CCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcC-CccCCcccc-------CCCCCCEEEccCCCCCccCCccc
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNL-TGTIPKEIG-------SLRNLEVLDLGSNNLNGTIPIEI 169 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l 169 (519)
+..++|+.|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456788888888888 667666544 88888888888 445666655 78889999999999888888776
Q ss_pred --cCCCCCCEEEccCCcCcccCchhccCC-----CCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCc--CChh
Q 010041 170 --GSVRNLETLSLDGNKLSGTIPIEIESL-----RNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV--LPQE 240 (519)
Q Consensus 170 --~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~p~~ 240 (519)
..+++|++|++++|++++. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7888899999999988876 7777766 8888888888888877778888888888888888887654 2223
Q ss_pred h--ccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCC-CCCCCCC
Q 010041 241 I--ENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLT 317 (519)
Q Consensus 241 l--~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~ 317 (519)
+ ..+++|++|++++|.+++.. +.....+..+++|++|++++|.+.+..| ..+..++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred HHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 3 55666666666666655210 0001122334455555555555544332 2333445
Q ss_pred CCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCcc
Q 010041 318 SLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSG 379 (519)
Q Consensus 318 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 379 (519)
+|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5555555555554 3343332 4555556666655544 33 5555666666666665553
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.2e-29 Score=240.52 Aligned_cols=249 Identities=21% Similarity=0.224 Sum_probs=163.9
Q ss_pred hcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCC-CccCCcccc-------CCCCCCEEEccCCcCcccCchh
Q 010041 121 IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL-NGTIPIEIG-------SVRNLETLSLDGNKLSGTIPIE 192 (519)
Q Consensus 121 l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~ 192 (519)
++..++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34445566666666665 455544332 55555555555 223333333 3455555555555555444444
Q ss_pred c--cCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccC-----CCCceeecccccccCcCcccc
Q 010041 193 I--ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENL-----KSLTALSMDANNLGGPIPSTL 265 (519)
Q Consensus 193 l--~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~-----~~L~~L~l~~n~l~~~~~~~l 265 (519)
+ ..+++|++|++++|.+ ++. |..+..+ ++|++|++++|.+.+..+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l------------------------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSW------------------------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp SSSCCSCCCSEEEEESCBC------------------------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred HHHhcCCCccEEEccCCCC------------------------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 3 4444455555554444 444 3444433 556666666666665555666
Q ss_pred cCCCCcceeeccCccCccc--CChhc--cCCCCCCEEeccCCcccc---cCCCCCCCCCCCcEEeCcCCccccCCc-hhh
Q 010041 266 FRLTNIEYLSLGFNRFNGS--IPREI--VNLKNLTSLSLGGNKLTG---HIPSTLGRLTSLQILDLSSNQLHSSIP-LVI 337 (519)
Q Consensus 266 ~~~~~L~~L~l~~n~~~~~--~~~~l--~~~~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 337 (519)
.++++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..| ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 6666666666666665543 23333 678889999999998873 222334577999999999999998764 455
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcccc
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSG 403 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 403 (519)
..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66899999999999998 6777776 8999999999999976 65 8899999999999999986
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.7e-28 Score=236.01 Aligned_cols=265 Identities=21% Similarity=0.233 Sum_probs=180.2
Q ss_pred CcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 103 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
++..+++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4556677777765555666777788888888888887777788888888888888888876544 77888888888888
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCc
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 262 (519)
|++++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L---------- 151 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL---------- 151 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC----------
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC----------
Confidence 8876432 236777777777777644322 2455666666666655544444444444444444
Q ss_pred ccccCCCCcceeeccCccCcccCChhc-cCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCC
Q 010041 263 STLFRLTNIEYLSLGFNRFNGSIPREI-VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFS 341 (519)
Q Consensus 263 ~~l~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 341 (519)
++|.+.+..+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+++..+ .+..++
T Consensus 152 --------------s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~ 214 (317)
T 3o53_A 152 --------------KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (317)
T ss_dssp --------------TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred --------------CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccC
Confidence 4444444333333 2456777777777776644 2 22347788888888888875433 477788
Q ss_pred CCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCc-cccchhhhcccCCCEEEccCC-cccccc
Q 010041 342 ALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLS-GQIPFAIGKLFNLASLDLSKN-KLSGSI 405 (519)
Q Consensus 342 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n-~l~~~~ 405 (519)
+|++|++++|++++ +|..+..+++|++|++++|.+. +.++..+..++.|+.++++++ .+.+..
T Consensus 215 ~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 88888888888874 5667778888888888888887 667777788888888877743 344433
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-28 Score=238.00 Aligned_cols=248 Identities=22% Similarity=0.235 Sum_probs=206.5
Q ss_pred CCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCC
Q 010041 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 176 (519)
+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 4567899999999999998888999999999999999999987654 899999999999999987432 348999
Q ss_pred EEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhh-ccCCCCceeecccc
Q 010041 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDAN 255 (519)
Q Consensus 177 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~~~~L~~L~l~~n 255 (519)
+|++++|++++..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 999999999876543 46889999999999998878788999999999999999998777666 47899999999999
Q ss_pred cccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccc-cCCc
Q 010041 256 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH-SSIP 334 (519)
Q Consensus 256 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~ 334 (519)
.+++. + ....+++|++|++++|.+++ +|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. +..+
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 98765 2 23358889999999998885 4556888889999999999888 46777888888888888888887 6667
Q ss_pred hhhcCCCCCCEEECcCC-cCcccCC
Q 010041 335 LVIGNFSALSYLDLSDN-RICGIIP 358 (519)
Q Consensus 335 ~~~~~~~~L~~L~l~~n-~l~~~~~ 358 (519)
..+..+++|+.+++.++ .+.+..+
T Consensus 256 ~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHHhccccceEEECCCchhccCCch
Confidence 77777888888777743 4444433
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.1e-25 Score=232.84 Aligned_cols=264 Identities=28% Similarity=0.370 Sum_probs=139.0
Q ss_pred CcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 103 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
++.|++++|+++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 344555555554 3333332 45555555555555 2333 3455555555555554 2333 345555555555
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCc
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 262 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 262 (519)
|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++. |. .+++|+.|++++|.+++ +|
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc
Confidence 55543 222 34555555555555543 3322 25555555555555532 21 23455555555555553 22
Q ss_pred ccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCC
Q 010041 263 STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 342 (519)
Q Consensus 263 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 342 (519)
..+++|+.|++++|.+++ +|.. .++|+.|++++|.+.. +|. .+++|+.|++++|.+++ +| ..+++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 234555666666665553 3321 3456666666666652 332 23566666666666654 33 34456
Q ss_pred CCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccc
Q 010041 343 LSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIG 410 (519)
Q Consensus 343 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 410 (519)
|++|++++|++++ +|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 6666666666663 333 3456666666666666 5566666666666666666666666555544
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.3e-25 Score=229.20 Aligned_cols=263 Identities=29% Similarity=0.370 Sum_probs=221.0
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999998 7787665 89999999999998 5665 5789999999999998 4665 6899999999
Q ss_pred cCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCccc
Q 010041 205 SSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284 (519)
Q Consensus 205 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 284 (519)
++|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|.+++. |. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-
Confidence 9999985 454 56899999999999986 443 358999999999998853 43 35789999999999985
Q ss_pred CChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCC
Q 010041 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKL 364 (519)
Q Consensus 285 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 364 (519)
+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 55 457899999999999985 443 35799999999999984 443 35899999999999986 45 456
Q ss_pred CCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCEEEccCCcceeeeec
Q 010041 365 SHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAH 431 (519)
Q Consensus 365 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 431 (519)
++|++|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++....
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 89999999999998 4555 6789999999999999 7789999999999999999999876543
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.6e-25 Score=211.40 Aligned_cols=216 Identities=27% Similarity=0.333 Sum_probs=135.2
Q ss_pred CCCCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccC
Q 010041 62 SDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTI 141 (519)
Q Consensus 62 ~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 141 (519)
.+.|.|.|+.|...+..+.+++++..... + +.. -.++|++|++++|.+++..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-i-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-I-PSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-C-CSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-c-CCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999998654455566666544332 1 111 1246777777777776655556777777777777777776555
Q ss_pred CccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcC
Q 010041 142 PKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 221 (519)
Q Consensus 142 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 221 (519)
+..|.++++|++|++++|.+.+..+..+.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55556677777777777776655555566667777777777777665555666667777777777766654444566666
Q ss_pred ccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccC
Q 010041 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 281 (519)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~ 281 (519)
+|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 666666666666655555555666666666666665544444444455555555555544
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7e-27 Score=239.10 Aligned_cols=235 Identities=22% Similarity=0.253 Sum_probs=153.7
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 377888888887777666777777788888887777766544 7777777777777777764322 266777777
Q ss_pred cCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCccc
Q 010041 205 SSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284 (519)
Q Consensus 205 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 284 (519)
++|.+++..+. .+++|+.|++++|.+++..|..+..+ ++|+.|++++|.+++.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l------------------------~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR------------------------SRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGG------------------------SSEEEEECTTSCCCEE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCC------------------------CCCCEEECCCCCCCCc
Confidence 77666654332 23455555555555555444444444 4455555555555544
Q ss_pred CChhcc-CCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCC
Q 010041 285 IPREIV-NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTK 363 (519)
Q Consensus 285 ~~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 363 (519)
.|..+. .+++|++|++++|.+.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhcc
Confidence 444443 45666666666666665422 2346777777777777776444 36777888888888888875 5666777
Q ss_pred CCCCcEEEccCccCc-cccchhhhcccCCCEEEcc
Q 010041 364 LSHLKYLNLSSNLLS-GQIPFAIGKLFNLASLDLS 397 (519)
Q Consensus 364 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~ 397 (519)
+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 788888888888877 5666677777777766664
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.8e-27 Score=238.00 Aligned_cols=238 Identities=23% Similarity=0.237 Sum_probs=205.5
Q ss_pred CCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCE
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET 177 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 177 (519)
..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|++++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 356699999999999999888999999999999999999997665 8999999999999999875432 389999
Q ss_pred EEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhc-cCCCCceeeccccc
Q 010041 178 LSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE-NLKSLTALSMDANN 256 (519)
Q Consensus 178 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~~~~L~~L~l~~n~ 256 (519)
|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999876553 468899999999999998888999999999999999999998888775 78999999999999
Q ss_pred ccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccc-cCCch
Q 010041 257 LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH-SSIPL 335 (519)
Q Consensus 257 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~ 335 (519)
+++.. ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 98762 23468999999999999986 45558889999999999999985 6777888899999999999987 56667
Q ss_pred hhcCCCCCCEEECc
Q 010041 336 VIGNFSALSYLDLS 349 (519)
Q Consensus 336 ~~~~~~~L~~L~l~ 349 (519)
.+..++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 77777777776664
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2e-27 Score=250.53 Aligned_cols=348 Identities=12% Similarity=0.066 Sum_probs=174.9
Q ss_pred CEEEEEcCCCceecccCCCCCCC-CCC-CcEEECCCCc-ccc-ccchhhcCCCCCCEEEcccCcCCcc----CCccccCC
Q 010041 77 RITDIGLQKSNIKGELGRLNFSC-FPN-LQYLDLGSNN-LSG-SIPSQIDSLSNLTYIYLYENNLTGT----IPKEIGSL 148 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~-l~~-L~~L~l~~n~-~~~-~~~~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l 148 (519)
.++.|++++....... ...+.. ++. |++|++++|. ++. .++....++++|++|+|++|.+++. ++..+.++
T Consensus 113 ~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCeEEeeccEecHHH-HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 4667777654322100 111222 334 7888887765 221 1333445677888888887776554 33344567
Q ss_pred CCCCEEEccCCCCCc----cCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCC---CCCCcccCCcC
Q 010041 149 RNLEVLDLGSNNLNG----TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS---GTIPKEIGSLR 221 (519)
Q Consensus 149 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---~~~p~~l~~l~ 221 (519)
++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.++++|++|+++.+... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 778888887777762 333344567778888888877764 5566777777777777643222 12223344455
Q ss_pred ccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCc-ccccCCCCcceeeccCccCcccCChhccC---------
Q 010041 222 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP-STLFRLTNIEYLSLGFNRFNGSIPREIVN--------- 291 (519)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~--------- 291 (519)
+|+.++++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....
T Consensus 271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 55555555432 22334444455555555555555433222 22344455555555422111122222233
Q ss_pred ---------------------------CCCCCEEeccCCcccccCCCCCCC-CCCCcEEeCc----CCccccC-----Cc
Q 010041 292 ---------------------------LKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLS----SNQLHSS-----IP 334 (519)
Q Consensus 292 ---------------------------~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~ 334 (519)
+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 444555555444444333323322 4455555553 3344331 22
Q ss_pred hhhcCCCCCCEEECcCCc--CcccCCCCCC-CCCCCcEEEccCccCcc-ccchhhhcccCCCEEEccCCccccc-ccccc
Q 010041 335 LVIGNFSALSYLDLSDNR--ICGIIPDELT-KLSHLKYLNLSSNLLSG-QIPFAIGKLFNLASLDLSKNKLSGS-IPTEI 409 (519)
Q Consensus 335 ~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l 409 (519)
..+..+++|++|+++.|. +++.....+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 223445555555554332 3322221121 24556666666666554 2333445556666666666665543 23333
Q ss_pred ccCCCCCEEEccCCccee
Q 010041 410 GNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 410 ~~l~~L~~L~l~~n~l~~ 427 (519)
..+++|+.|++++|++++
T Consensus 510 ~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHCSSCCEEEEESCBCCT
T ss_pred HhcCccCeeECcCCcCCH
Confidence 455666666666666543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.6e-24 Score=205.31 Aligned_cols=147 Identities=23% Similarity=0.259 Sum_probs=89.1
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45677777777766555556666667777777766666555556666666666666666666555555666666666666
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCC-CCcccCCcCccCeeeCCCCcCCCcCChhhccCCCC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGT-IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 247 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L 247 (519)
++|++.+..+..++++++|++|++++|.+.+. +|..++.+++|++|++++|.+++..+..+..+++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 66666654444556666666666666666542 35555555555555555555554444444333333
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.3e-24 Score=205.88 Aligned_cols=208 Identities=27% Similarity=0.276 Sum_probs=183.6
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999877778999999999999999998777778999999999999999999888888999999999999
Q ss_pred cCCcCCCCCCcccCCcCccCeeeCCCCcCCCc-CChhhccCCCCceeecccccccCcCcccccCCCCcc----eeeccCc
Q 010041 205 SSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV-LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIE----YLSLGFN 279 (519)
Q Consensus 205 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~----~L~l~~n 279 (519)
++|.+.+..+..++.+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987777899999999999999999874 688999999999999999999988777777666666 8999999
Q ss_pred cCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCC
Q 010041 280 RFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSI 333 (519)
Q Consensus 280 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 333 (519)
.+.+..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9986554444 4458999999999999777777889999999999999998643
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.8e-24 Score=201.45 Aligned_cols=206 Identities=26% Similarity=0.309 Sum_probs=107.3
Q ss_pred CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEE
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
.+++|+.|++++|.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345555555555555421 2355555555555555555532 245555555555555555554444445555555555
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++++|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 55555555444444555555555555555555444444455555555555555555544444455555555555555555
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCC
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 315 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 315 (519)
+..+..+..+++|+.|++++|.+.+. +++|+.+++..|.+.|.+|..++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 44444444555555555555544322 234444445555555554444443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-23 Score=196.03 Aligned_cols=202 Identities=29% Similarity=0.331 Sum_probs=118.1
Q ss_pred CCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEcc
Q 010041 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD 181 (519)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 181 (519)
+.+.+++++++++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45667777776663 444332 456677777776665555566666777777776666664444445666666666666
Q ss_pred CCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcC
Q 010041 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 182 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
+|++++..+..|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66666555555566666666666666666555555566666666666666655544444555555555555555544433
Q ss_pred cccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccc
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 330 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 330 (519)
+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 174 ~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 E------------------------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp T------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred h------------------------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3 34445555555555555555444444555566666666666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.3e-23 Score=198.35 Aligned_cols=207 Identities=30% Similarity=0.348 Sum_probs=183.3
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.+++.+..... ...+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 467788888665543 45688899999999999999863 4789999999999999999988888899999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
+++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998777778999999999999999998777778999999999999999998777778999999999999999999
Q ss_pred cCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCC
Q 010041 236 VLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKN 294 (519)
Q Consensus 236 ~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 294 (519)
..+..+..+++|+.|++++|.+.+. ++.++.+++..|.+.|.+|.+++.+..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888889999999999999987654 567899999999999999988776543
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=3.1e-26 Score=241.35 Aligned_cols=327 Identities=13% Similarity=0.066 Sum_probs=224.2
Q ss_pred CCCCCcEEECCCCccccccchhhcC-CCC-CCEEEcccCc-CCc-cCCccccCCCCCCEEEccCCCCCcc----CCcccc
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDS-LSN-LTYIYLYENN-LTG-TIPKEIGSLRNLEVLDLGSNNLNGT----IPIEIG 170 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~~-L~~L~L~~n~-~~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~ 170 (519)
.+++|++|+|++|.+++..+..+.. +++ |++|++++|. ++. .++....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6899999999999998777777766 444 9999999886 221 1233345789999999999988655 333456
Q ss_pred CCCCCCEEEccCCcCc----ccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCC---CcCChhhcc
Q 010041 171 SVRNLETLSLDGNKLS----GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG---GVLPQEIEN 243 (519)
Q Consensus 171 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---~~~p~~l~~ 243 (519)
++++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++..... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 7899999999999987 3455567789999999999999885 6778889999999999864322 234456778
Q ss_pred CCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCC-hhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEE
Q 010041 244 LKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIP-REIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQIL 322 (519)
Q Consensus 244 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 322 (519)
+++|+.++++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 8999999998753 44677778889999999999999765433 446789999999998432222223333445666666
Q ss_pred eCcC-----------CccccCC-chhhcCCCCCCEEECcCCcCcccCCCC------------------------------
Q 010041 323 DLSS-----------NQLHSSI-PLVIGNFSALSYLDLSDNRICGIIPDE------------------------------ 360 (519)
Q Consensus 323 ~l~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~------------------------------ 360 (519)
++++ +.+++.. +.....+++|++|+++.|.+++..+..
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 6662 3333221 111233445555555444444322221
Q ss_pred ----CCCCCCCcEEEccCcc--Cccccchhhhc-ccCCCEEEccCCcccc-ccccccccCCCCCEEEccCCccee
Q 010041 361 ----LTKLSHLKYLNLSSNL--LSGQIPFAIGK-LFNLASLDLSKNKLSG-SIPTEIGNCSELRNLTLNHNSLNG 427 (519)
Q Consensus 361 ----~~~l~~L~~L~l~~n~--l~~~~~~~~~~-~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~ 427 (519)
+..+++|++|+++.|. +++.....++. +++|++|++++|.+++ .++..+..+++|+.|++++|++++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 3335566666665432 44444444433 6778888888888776 345555778888888888888754
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.3e-23 Score=195.85 Aligned_cols=203 Identities=26% Similarity=0.269 Sum_probs=110.6
Q ss_pred CCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCC
Q 010041 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 176 (519)
+..+++++.+++++++++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 345556666666666665 2333332 456666666666665555556666666666666666553322 24555666
Q ss_pred EEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccc
Q 010041 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANN 256 (519)
Q Consensus 177 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~ 256 (519)
+|++++|+++ .+|..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---- 155 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL---- 155 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC----
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC----
Confidence 6666666554 44545555555555555555555444444555555555555555555444444444444444444
Q ss_pred ccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccc
Q 010041 257 LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 330 (519)
Q Consensus 257 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 330 (519)
++|++++..+..+..+++|+.|++++|.+. .+|..+...++|+.+++++|.+.
T Consensus 156 --------------------~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 --------------------ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --------------------TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred --------------------CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 444444333333445555666666666655 44555555566666666666654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.2e-22 Score=193.25 Aligned_cols=203 Identities=26% Similarity=0.256 Sum_probs=133.1
Q ss_pred hcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCC
Q 010041 121 IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQ 200 (519)
Q Consensus 121 l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 200 (519)
++++++++.++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 445556666666666555 3443332 455566666665555545555555556666665555553222 14455555
Q ss_pred EEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCcc
Q 010041 201 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 280 (519)
Q Consensus 201 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 280 (519)
+|++++|.+. .+|. .+..+++|+.|++++|.+++..+..+.++++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~------------------------~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPL------------------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCCS-SCCC------------------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCch------------------------hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 5555555554 3343 44444555555555555554444555566666667777777
Q ss_pred CcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCc
Q 010041 281 FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC 354 (519)
Q Consensus 281 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 354 (519)
+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++. .+|..+...++|+.|++++|.+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66555566778899999999999999776677889999999999999998 56777778889999999999875
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=8.4e-25 Score=213.53 Aligned_cols=252 Identities=21% Similarity=0.248 Sum_probs=137.5
Q ss_pred cEEECCCCccccccchhhcCC--CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCcc-CCccccCCCCCCEEEc
Q 010041 104 QYLDLGSNNLSGSIPSQIDSL--SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGT-IPIEIGSVRNLETLSL 180 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 180 (519)
+.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..+++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 44555555544 3344444 6667777777666655444 34566777777776666544 5555666667777777
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCC-cCCCC-CCcccCCcCccCeeeCCCC-cCCCc-CChhhccCC-CCceeecccc
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSN-KLSGT-IPKEIGSLRNLKELDLSSN-KLGGV-LPQEIENLK-SLTALSMDAN 255 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~-~p~~l~~~~-~L~~L~l~~n 255 (519)
++|.+++..+..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 777666666666666667777777666 45432 4444555666666666666 55543 344555666 6666666666
Q ss_pred --ccc-CcCcccccCCCCcceeeccCcc-CcccCChhccCCCCCCEEeccCCc-ccccCCCCCCCCCCCcEEeCcCCccc
Q 010041 256 --NLG-GPIPSTLFRLTNIEYLSLGFNR-FNGSIPREIVNLKNLTSLSLGGNK-LTGHIPSTLGRLTSLQILDLSSNQLH 330 (519)
Q Consensus 256 --~l~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~ 330 (519)
.++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 333 2334444455555666665555 444444555555666666666553 22111123445555555555555 32
Q ss_pred cCCchhhcCCCCCCEEECcCCcCcccCCCCCC
Q 010041 331 SSIPLVIGNFSALSYLDLSDNRICGIIPDELT 362 (519)
Q Consensus 331 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 362 (519)
...-..+. .++..|++++|++++..|..++
T Consensus 285 ~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 285 DGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 21111111 1233334555555555554443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.2e-25 Score=220.74 Aligned_cols=246 Identities=20% Similarity=0.217 Sum_probs=128.0
Q ss_pred cchhhcCCCCCCEEEcccCcCCccCC----ccccCCCCCCEEEccCCC---CCccCCccc-------cCCCCCCEEEccC
Q 010041 117 IPSQIDSLSNLTYIYLYENNLTGTIP----KEIGSLRNLEVLDLGSNN---LNGTIPIEI-------GSVRNLETLSLDG 182 (519)
Q Consensus 117 ~~~~l~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~L~~ 182 (519)
++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555666666666666666654422 234556666666666642 333444333 4556666666666
Q ss_pred CcCcc----cCchhccCCCCCCEEeccCCcCCCCCCccc----CCc---------CccCeeeCCCCcCC-CcCC---hhh
Q 010041 183 NKLSG----TIPIEIESLRNLQWLDLSSNKLSGTIPKEI----GSL---------RNLKELDLSSNKLG-GVLP---QEI 241 (519)
Q Consensus 183 n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~-~~~p---~~l 241 (519)
|.+++ .+|..+.++++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66654 345555566666666666665543222222 222 45555555555554 2222 233
Q ss_pred ccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCccc----ccCCCCCCCCC
Q 010041 242 ENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLT----GHIPSTLGRLT 317 (519)
Q Consensus 242 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~l~~l~ 317 (519)
..+++|++|++++|.++.... ....+..+..+++|++|++++|.++ ..+|..+..++
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~-------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred HhCCCcCEEECcCCCCCHhHH-------------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 344445555554444431100 0012224445555555555555553 33444455555
Q ss_pred CCcEEeCcCCccccC----Cchhh--cCCCCCCEEECcCCcCcc----cCCCCC-CCCCCCcEEEccCccCcccc
Q 010041 318 SLQILDLSSNQLHSS----IPLVI--GNFSALSYLDLSDNRICG----IIPDEL-TKLSHLKYLNLSSNLLSGQI 381 (519)
Q Consensus 318 ~L~~L~l~~n~l~~~----~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 381 (519)
+|++|++++|.+.+. ++..+ +.+++|++|++++|.+++ .+|..+ ..+++|++|++++|.+++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666666665543 23344 236667777777776665 344444 44667777777777777554
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.4e-24 Score=214.00 Aligned_cols=258 Identities=19% Similarity=0.218 Sum_probs=155.1
Q ss_pred EEECCCCccccccchhhcCCCCCCEEEcccCcCCccCC----ccccCCC-CCCEEEccCCCCCccCCccccCC-----CC
Q 010041 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP----KEIGSLR-NLEVLDLGSNNLNGTIPIEIGSV-----RN 174 (519)
Q Consensus 105 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 174 (519)
+++++.|++++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46778888888888777777778888888888876655 6677777 78888888888876666555554 78
Q ss_pred CCEEEccCCcCcccCchhc----cCC-CCCCEEeccCCcCCCCCCccc----CC-cCccCeeeCCCCcCCCcCC----hh
Q 010041 175 LETLSLDGNKLSGTIPIEI----ESL-RNLQWLDLSSNKLSGTIPKEI----GS-LRNLKELDLSSNKLGGVLP----QE 240 (519)
Q Consensus 175 L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~l~~~~p----~~ 240 (519)
|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876655543 333 678888888887775554433 23 2577777777777664332 22
Q ss_pred hccCC-CCceeecccccccCcCccccc----CC-CCcceeeccCccCccc----CChhccCCCCCCEEeccCCcccccCC
Q 010041 241 IENLK-SLTALSMDANNLGGPIPSTLF----RL-TNIEYLSLGFNRFNGS----IPREIVNLKNLTSLSLGGNKLTGHIP 310 (519)
Q Consensus 241 l~~~~-~L~~L~l~~n~l~~~~~~~l~----~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~ 310 (519)
+...+ +|++|++++|.+++..+..+. .. ++|++|++++|.+.+. ++..+...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------ 223 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------ 223 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------
Confidence 33333 666666666666554443322 22 3555555555554431 22222221
Q ss_pred CCCCCCCCCcEEeCcCCccccCCc----hhhcCCCCCCEEECcCCcCcc-------cCCCCCCCCCCCcEEEccCccCcc
Q 010041 311 STLGRLTSLQILDLSSNQLHSSIP----LVIGNFSALSYLDLSDNRICG-------IIPDELTKLSHLKYLNLSSNLLSG 379 (519)
Q Consensus 311 ~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~~ 379 (519)
.++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+
T Consensus 224 -----~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 224 -----PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp -----CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred -----CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2344445555444443322 223344555555555555221 223456667777788888887776
Q ss_pred ccchhh
Q 010041 380 QIPFAI 385 (519)
Q Consensus 380 ~~~~~~ 385 (519)
..+..+
T Consensus 299 ~~~~~~ 304 (362)
T 3goz_A 299 SHSIPI 304 (362)
T ss_dssp GGCHHH
T ss_pred cchHHH
Confidence 655444
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.4e-24 Score=211.97 Aligned_cols=256 Identities=19% Similarity=0.184 Sum_probs=159.2
Q ss_pred CCCEEEcccCcCCccCCccccCC--CCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCccc-CchhccCCCCCCEE
Q 010041 126 NLTYIYLYENNLTGTIPKEIGSL--RNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGT-IPIEIESLRNLQWL 202 (519)
Q Consensus 126 ~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 202 (519)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888888776 3455666 7888888888888766554 56788888888888887765 77777888888888
Q ss_pred eccCCcCCCCCCcccCCcCccCeeeCCCC-cCCC-cCChhhccCCCCceeecccc-cccCc-CcccccCCC-Ccceeecc
Q 010041 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSN-KLGG-VLPQEIENLKSLTALSMDAN-NLGGP-IPSTLFRLT-NIEYLSLG 277 (519)
Q Consensus 203 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~-~~p~~l~~~~~L~~L~l~~n-~l~~~-~~~~l~~~~-~L~~L~l~ 277 (519)
++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888887777777778888888888887 5654 24555667777777777777 66543 344455555 66666666
Q ss_pred Cc--cCc-ccCChhccCCCCCCEEeccCCc-ccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcC
Q 010041 278 FN--RFN-GSIPREIVNLKNLTSLSLGGNK-LTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 353 (519)
Q Consensus 278 ~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 353 (519)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. .+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-----------------------~~ 260 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----------------------DI 260 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-----------------------TC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-----------------------CC
Confidence 65 333 2344444455555555555555 343333344444444444444442 12
Q ss_pred cccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcccccccccccc
Q 010041 354 CGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGN 411 (519)
Q Consensus 354 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 411 (519)
.......+..+++|++|++++| ++...-..+. ..+..|++++|++++..|..++.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 1111123444555666666655 3322111111 23555667788888777776653
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=6.2e-25 Score=218.69 Aligned_cols=257 Identities=20% Similarity=0.260 Sum_probs=127.3
Q ss_pred cCCccccCCCCCCEEEccCCCCCccCC----ccccCCCCCCEEEccCC---cCcccCchhc-------cCCCCCCEEecc
Q 010041 140 TIPKEIGSLRNLEVLDLGSNNLNGTIP----IEIGSVRNLETLSLDGN---KLSGTIPIEI-------ESLRNLQWLDLS 205 (519)
Q Consensus 140 ~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~l~ 205 (519)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++| ++++.+|..+ .++++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355556667777777777777665422 33556777777777764 3344444443 455555555555
Q ss_pred CCcCCC----CCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccC
Q 010041 206 SNKLSG----TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 281 (519)
Q Consensus 206 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~ 281 (519)
+|.+.+ .+|..+..+++|++|++++|.++...+..+... +..+ ..+.+.+ ..++|++|++++|.+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~l--~~~~~~~-------~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL--AVNKKAK-------NAPPLRSIICGRNRL 171 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH--HHHHHHH-------TCCCCCEEECCSSCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHHH--hhhhhcc-------cCCCCcEEECCCCCC
Confidence 555554 233344444555555555554432222111110 0000 0000000 005556666666655
Q ss_pred c-ccCC---hhccCCCCCCEEeccCCcccc-----cCCCCCCCCCCCcEEeCcCCccc----cCCchhhcCCCCCCEEEC
Q 010041 282 N-GSIP---REIVNLKNLTSLSLGGNKLTG-----HIPSTLGRLTSLQILDLSSNQLH----SSIPLVIGNFSALSYLDL 348 (519)
Q Consensus 282 ~-~~~~---~~l~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l 348 (519)
. +.++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 4 2222 345556667777777776652 22334555666666666666654 334445555555555555
Q ss_pred cCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhh--cccCCCEEEccCCcccc----cccccc-ccCCCCCEEEcc
Q 010041 349 SDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIG--KLFNLASLDLSKNKLSG----SIPTEI-GNCSELRNLTLN 421 (519)
Q Consensus 349 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~ 421 (519)
++|.+++.... .++..+. .+++|++|++++|.+++ .+|..+ .++++|+.|+++
T Consensus 252 ~~n~i~~~~~~--------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 252 NDCLLSARGAA--------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp TTCCCCHHHHH--------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred CCCCCchhhHH--------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 55555432000 0233332 24555555555555554 244444 345555555555
Q ss_pred CCccee
Q 010041 422 HNSLNG 427 (519)
Q Consensus 422 ~n~l~~ 427 (519)
+|++++
T Consensus 312 ~N~l~~ 317 (386)
T 2ca6_A 312 GNRFSE 317 (386)
T ss_dssp TSBSCT
T ss_pred CCcCCc
Confidence 555553
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.2e-24 Score=212.67 Aligned_cols=228 Identities=23% Similarity=0.252 Sum_probs=109.1
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCCCCccCC----ccccCCC-CCCEEEccCCcCcccCchhccCC-----CCC
Q 010041 130 IYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIP----IEIGSVR-NLETLSLDGNKLSGTIPIEIESL-----RNL 199 (519)
Q Consensus 130 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L 199 (519)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555666665555555555556666666666554433 3444555 56666666666555444444443 555
Q ss_pred CEEeccCCcCCCCCCcccC----Cc-CccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccC-CCCcce
Q 010041 200 QWLDLSSNKLSGTIPKEIG----SL-RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEY 273 (519)
Q Consensus 200 ~~L~l~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~ 273 (519)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 5555555555444333222 22 44444444444444333222211 0111 134444
Q ss_pred eeccCccCccc----CChhccCCC-CCCEEeccCCcccccCCCC----CCCC-CCCcEEeCcCCccccC----CchhhcC
Q 010041 274 LSLGFNRFNGS----IPREIVNLK-NLTSLSLGGNKLTGHIPST----LGRL-TSLQILDLSSNQLHSS----IPLVIGN 339 (519)
Q Consensus 274 L~l~~n~~~~~----~~~~l~~~~-~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~~~~ 339 (519)
|++++|.+.+. ++..+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 44444444421 222233333 5666666666555433322 2223 3666666666665542 2333333
Q ss_pred -CCCCCEEECcCCcCcccCC----CCCCCCCCCcEEEccCccC
Q 010041 340 -FSALSYLDLSDNRICGIIP----DELTKLSHLKYLNLSSNLL 377 (519)
Q Consensus 340 -~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l 377 (519)
.++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 3466677776666654322 2234445555555555553
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6e-23 Score=197.85 Aligned_cols=204 Identities=22% Similarity=0.223 Sum_probs=101.1
Q ss_pred CCCCEEEcccCcCCccCCccc--cCCCCCCEEEccCCCCCccCC----ccccCCCCCCEEEccCCcCcccCchhccCCCC
Q 010041 125 SNLTYIYLYENNLTGTIPKEI--GSLRNLEVLDLGSNNLNGTIP----IEIGSVRNLETLSLDGNKLSGTIPIEIESLRN 198 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 198 (519)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555554 555555555555555554333 22234555555555555555444445555555
Q ss_pred CCEEeccCCcCCCC--C--CcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcc-cccCCCCcce
Q 010041 199 LQWLDLSSNKLSGT--I--PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPS-TLFRLTNIEY 273 (519)
Q Consensus 199 L~~L~l~~n~l~~~--~--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~ 273 (519)
|++|++++|++.+. + +..++.+++|++|++++|.++.. +. .+. .+..+++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~---------------------~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TG---------------------VCAALAAAGVQPHS 228 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HH---------------------HHHHHHHHTCCCSS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HH---------------------HHHHHHhcCCCCCE
Confidence 55555555554321 1 11123444555555555544321 11 001 1233445555
Q ss_pred eeccCccCcccCChhccCC---CCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcC
Q 010041 274 LSLGFNRFNGSIPREIVNL---KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSD 350 (519)
Q Consensus 274 L~l~~n~~~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 350 (519)
|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 5555555554444444433 45666666666665 3444442 5666666666666643 22 35566666666666
Q ss_pred CcCcc
Q 010041 351 NRICG 355 (519)
Q Consensus 351 n~l~~ 355 (519)
|++++
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 66653
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.5e-22 Score=187.25 Aligned_cols=192 Identities=23% Similarity=0.293 Sum_probs=141.5
Q ss_pred CCCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCC
Q 010041 63 DHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142 (519)
Q Consensus 63 ~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p 142 (519)
+||.|.|..|... .+.+++++..... + +..+ .++++.|++++|.+++..+..|.++++|++|+|++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~-~-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQGKSLDS-V-PSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECTTCCCSS-C-CSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC--CeEEecCCCCccc-c-CCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 4668889999532 2345665443322 1 1112 2578888888888887777778888888888888888887777
Q ss_pred ccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCc
Q 010041 143 KEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 222 (519)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 222 (519)
..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..++.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77888888888888888887666666778888888888888887666666777888888888888887666666777888
Q ss_pred cCeeeCCCCcCCCcCChhhccCCCCceeecccccccCc
Q 010041 223 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260 (519)
Q Consensus 223 L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 260 (519)
|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888888888777666777777788888877776644
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=6.2e-25 Score=231.57 Aligned_cols=205 Identities=12% Similarity=0.066 Sum_probs=108.6
Q ss_pred cCccCeeeCCCCcCCCcC-ChhhccCCCCceeecccccccCc-CcccccCCCCcceeeccC---------ccCcccCChh
Q 010041 220 LRNLKELDLSSNKLGGVL-PQEIENLKSLTALSMDANNLGGP-IPSTLFRLTNIEYLSLGF---------NRFNGSIPRE 288 (519)
Q Consensus 220 l~~L~~L~l~~n~l~~~~-p~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~---------n~~~~~~~~~ 288 (519)
+++|++|++++|.+++.. +..+..+++|++|++++| +.+. ++.....+++|++|++.. +.+++.....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 455555555555543221 112334555555555554 2211 111122355556555522 2222221112
Q ss_pred c-cCCCCCCEEeccCCcccccCCCCCC-CCCCCcEEeCc--C----Ccccc-----CCchhhcCCCCCCEEECcCCcCcc
Q 010041 289 I-VNLKNLTSLSLGGNKLTGHIPSTLG-RLTSLQILDLS--S----NQLHS-----SIPLVIGNFSALSYLDLSDNRICG 355 (519)
Q Consensus 289 l-~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~ 355 (519)
+ ..+++|++|.+..|.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 2 2356666666655555543333332 35677777776 3 33331 1122245567777777765 4444
Q ss_pred cCCCCCCC-CCCCcEEEccCccCccccchhh-hcccCCCEEEccCCcccccccc-ccccCCCCCEEEccCCcce
Q 010041 356 IIPDELTK-LSHLKYLNLSSNLLSGQIPFAI-GKLFNLASLDLSKNKLSGSIPT-EIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 356 ~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 426 (519)
..+..+.. +++|++|++++|.+++.....+ ..+++|++|++++|.+++.... .+..+++|+.|++++|+++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33333333 6778888888888766544444 5678888888888887654433 3445778888888888774
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3e-22 Score=185.38 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCcEEECCCCccccccchhhcCCCCCCEEEcccCc-CCccCCccccCCCCCCEEEccC-CCCCccCCccccCCCCCCEEE
Q 010041 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN-LTGTIPKEIGSLRNLEVLDLGS-NNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 179 (519)
+|++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777766555567777777777777775 6655555666677777777776 666655455566666677777
Q ss_pred ccCCcCcccCchhccCCCCCC---EEeccCC-cCCCCCCcccCCcCccC-eeeCCCCcCCCcCChhhccCCCCceeeccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQ---WLDLSSN-KLSGTIPKEIGSLRNLK-ELDLSSNKLGGVLPQEIENLKSLTALSMDA 254 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~ 254 (519)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 76666654 443 55566665 6666666 55544444455555555 5665555555222222222 3444444444
Q ss_pred c
Q 010041 255 N 255 (519)
Q Consensus 255 n 255 (519)
|
T Consensus 189 n 189 (239)
T 2xwt_C 189 N 189 (239)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=195.58 Aligned_cols=230 Identities=20% Similarity=0.200 Sum_probs=166.0
Q ss_pred CCCCEEEcccCcCCccCCc---cccCCCCCCEEEccCCCCCccCCccc--cCCCCCCEEEccCCcCcccCc----hhccC
Q 010041 125 SNLTYIYLYENNLTGTIPK---EIGSLRNLEVLDLGSNNLNGTIPIEI--GSVRNLETLSLDGNKLSGTIP----IEIES 195 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~ 195 (519)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567777777666532111 12234678888888888888888777 788888888888888876544 33456
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceee
Q 010041 196 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLS 275 (519)
Q Consensus 196 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 275 (519)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+... + ..+..+..+++|++|+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~------------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--L------------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--H------------------HTTSCTTSSCCCCSCB
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--h------------------hHHHhhhcCCCCCEEE
Confidence 7788888888888877767777777777777777777553200 0 0011123455666666
Q ss_pred ccCccCcc--cCCh-hccCCCCCCEEeccCCcccccCCCCCCCC---CCCcEEeCcCCccccCCchhhcCCCCCCEEECc
Q 010041 276 LGFNRFNG--SIPR-EIVNLKNLTSLSLGGNKLTGHIPSTLGRL---TSLQILDLSSNQLHSSIPLVIGNFSALSYLDLS 349 (519)
Q Consensus 276 l~~n~~~~--~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 349 (519)
+++|.++. ..+. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 66666652 1122 25678999999999999998878777776 69999999999999 5666553 799999999
Q ss_pred CCcCcccCCCCCCCCCCCcEEEccCccCcc
Q 010041 350 DNRICGIIPDELTKLSHLKYLNLSSNLLSG 379 (519)
Q Consensus 350 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 379 (519)
+|++++. |. +..+++|++|++++|.+++
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999964 33 6788999999999999875
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.1e-22 Score=185.23 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=170.2
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCC-CCccCCccccCCCCCCEEEccC-CcCcccCchhccCCCCCCEE
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN-LNGTIPIEIGSVRNLETLSLDG-NKLSGTIPIEIESLRNLQWL 202 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 202 (519)
++|++|++++|.+++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998777789999999999999997 8766666889999999999998 99987777789999999999
Q ss_pred eccCCcCCCCCCcccCCcCccC---eeeCCCC-cCCCcCChhhccCCCCc-eeecccccccCcCcccccCCCCcceeecc
Q 010041 203 DLSSNKLSGTIPKEIGSLRNLK---ELDLSSN-KLGGVLPQEIENLKSLT-ALSMDANNLGGPIPSTLFRLTNIEYLSLG 277 (519)
Q Consensus 203 ~l~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 277 (519)
++++|.+++ +|. ++.+++|+ +|++++| .+++..+..+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999986 665 88888888 9999999 88887777899999999 9999999998 555544444899999999
Q ss_pred Ccc-CcccCChhccCC-CCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCc
Q 010041 278 FNR-FNGSIPREIVNL-KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 328 (519)
Q Consensus 278 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 328 (519)
+|+ +++..+..+..+ ++|++|++++|.+.+. |.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 995 886667778888 9999999999999854 433 67899999988763
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=8.3e-22 Score=178.27 Aligned_cols=185 Identities=23% Similarity=0.255 Sum_probs=147.7
Q ss_pred CCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCc
Q 010041 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPK 143 (519)
Q Consensus 64 ~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~ 143 (519)
.|.|.++.|...+ ++ .......++|++|++++|.+++..+..+.++++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~~~-l~--------------~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-RT--------------SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-CS--------------SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC-cc--------------CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4789999997533 11 11122356899999999999877777788999999999999999977667
Q ss_pred cccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCcc
Q 010041 144 EIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 223 (519)
Q Consensus 144 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 223 (519)
.|..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78899999999999999986666667889999999999999987766678889999999999999887666667888899
Q ss_pred CeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCC
Q 010041 224 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTN 270 (519)
Q Consensus 224 ~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 270 (519)
++|++++|.+.+. +++|+.|+++.|.++|.+|..++.++.
T Consensus 151 ~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 9999998876643 457788888888888888877665543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=181.58 Aligned_cols=179 Identities=25% Similarity=0.296 Sum_probs=116.6
Q ss_pred CCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEcc
Q 010041 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD 181 (519)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 181 (519)
..+.++++++.++ .+|..+. +.|+.|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456777777665 3444333 467777777777776666667777777777777777766666666677777777777
Q ss_pred CCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcC
Q 010041 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 182 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
+|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77776655566666777777777777776555555566667777777777666655555666666666666666666555
Q ss_pred cccccCCCCcceeeccCccCcc
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNG 283 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~ 283 (519)
+..+..+++|+.|++++|.+.+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5555555666666666655543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-21 Score=186.92 Aligned_cols=193 Identities=23% Similarity=0.397 Sum_probs=99.3
Q ss_pred CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEE
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 34555555555555543 22 35555555555555555553322 55555555555555555432 2 35555555555
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++++|++++. + .+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------------- 166 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL---------------------- 166 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----------------------
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC----------------------
Confidence 5555555432 2 24555555555555555543221 44444455555544444432
Q ss_pred CcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCcccc
Q 010041 259 GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 331 (519)
Q Consensus 259 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 331 (519)
.+ +..+++|+.|++++|.+.+.. . +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 167 --~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 --TP--LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GG--GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred --hh--hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 22 444555555555555554322 1 5556666666666666664432 5666667777776666653
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.2e-21 Score=186.42 Aligned_cols=193 Identities=30% Similarity=0.486 Sum_probs=124.4
Q ss_pred CCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEE
Q 010041 123 SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWL 202 (519)
Q Consensus 123 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 202 (519)
.+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. + .
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~---------- 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-A---------- 102 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-G----------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-h----------
Confidence 34555555555555542 22 34455555555555555543222 44555555555555554432 1 3
Q ss_pred eccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCc
Q 010041 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282 (519)
Q Consensus 203 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 282 (519)
+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 103 --------------~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 103 --------------IAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp --------------GTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred --------------hcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 44444555555555544432 1 24555555555555555554332 566778888888888887
Q ss_pred ccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcc
Q 010041 283 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICG 355 (519)
Q Consensus 283 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 355 (519)
+ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 D-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred C-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5 333 8899999999999999986543 7889999999999999987653 7889999999999999975
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=8.8e-24 Score=222.74 Aligned_cols=329 Identities=17% Similarity=0.156 Sum_probs=227.4
Q ss_pred CCCCCCcEEECCCCccccccchhhc-CCCCCCEEEcccC-cCCcc-CCccccCCCCCCEEEccCCCCCccCCccc----c
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQID-SLSNLTYIYLYEN-NLTGT-IPKEIGSLRNLEVLDLGSNNLNGTIPIEI----G 170 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n-~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~ 170 (519)
..+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3578999999999998877776665 6899999999988 45432 44445589999999999998765444333 3
Q ss_pred CCCCCCEEEccCCc--Ccc-cCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCc---------------
Q 010041 171 SVRNLETLSLDGNK--LSG-TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK--------------- 232 (519)
Q Consensus 171 ~l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~--------------- 232 (519)
.+++|++|++++|. ++. .++..+.++++|++|++++|...+.++..+..+++|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 67799999999986 321 122223567999999999883322355566677777777755442
Q ss_pred -----------CC----CcCChhhccCCCCceeecccccccCcCc-ccccCCCCcceeeccCccCcc-cCChhccCCCCC
Q 010041 233 -----------LG----GVLPQEIENLKSLTALSMDANNLGGPIP-STLFRLTNIEYLSLGFNRFNG-SIPREIVNLKNL 295 (519)
Q Consensus 233 -----------l~----~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L 295 (519)
+. +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+ .++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 11 1233333466788888888887654322 23457788888888877 332 233333457888
Q ss_pred CEEeccC---------CcccccCCCCC-CCCCCCcEEeCcCCccccCCchhhc-CCCCCCEEECc--C----CcCccc--
Q 010041 296 TSLSLGG---------NKLTGHIPSTL-GRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLS--D----NRICGI-- 356 (519)
Q Consensus 296 ~~L~l~~---------n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-- 356 (519)
++|++.+ +.+++.....+ ..+++|++|.++.|.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 8888843 33433221112 2378899998888888765555554 58999999998 3 445421
Q ss_pred ---CCCCCCCCCCCcEEEccCccCccccchhhhc-ccCCCEEEccCCcccccccccc-ccCCCCCEEEccCCcceee
Q 010041 357 ---IPDELTKLSHLKYLNLSSNLLSGQIPFAIGK-LFNLASLDLSKNKLSGSIPTEI-GNCSELRNLTLNHNSLNGK 428 (519)
Q Consensus 357 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~ 428 (519)
++..+..+++|++|++++ .+++.....++. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 111245678999999977 777666666665 8899999999999987666555 6799999999999998543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.4e-20 Score=168.65 Aligned_cols=181 Identities=24% Similarity=0.273 Sum_probs=141.0
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (519)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456677776653 34333 458899999999998777777888999999999999888665656788899999999999
Q ss_pred cCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcc
Q 010041 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPS 263 (519)
Q Consensus 184 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 263 (519)
++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9887666667888999999999998887666667888889999998888887766667888888888888886653
Q ss_pred cccCCCCcceeeccCccCcccCChhccCCCC
Q 010041 264 TLFRLTNIEYLSLGFNRFNGSIPREIVNLKN 294 (519)
Q Consensus 264 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 294 (519)
.+++|+.|+++.|.++|.+|.+++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456777888888888777776665543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.8e-19 Score=176.46 Aligned_cols=134 Identities=16% Similarity=0.085 Sum_probs=67.1
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCC-ccccCCCCCCE-EEccCCCCCccCCccccCCCCCCEE
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP-KEIGSLRNLEV-LDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.+|++....|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666666666654444456666666666666666544443 24555555543 3344455554445555556666666
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccC-CcCCCCCCcccCCc-CccCeeeCCCCcCC
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSS-NKLSGTIPKEIGSL-RNLKELDLSSNKLG 234 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l-~~L~~L~l~~n~l~ 234 (519)
++++|++.+..+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6666655544443444444455555533 23332222233332 23444444444444
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.1e-19 Score=187.34 Aligned_cols=148 Identities=26% Similarity=0.437 Sum_probs=66.2
Q ss_pred CCCC-----Cccee-eeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccC
Q 010041 62 SDHC-----GWVGI-TCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135 (519)
Q Consensus 62 ~~~C-----~w~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 135 (519)
.++| .|.++ .|.. ++++.|+++++.... ++. .+ +++|++|++++|.++ .+| ..+++|++|++++|
T Consensus 40 ~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDN 110 (571)
T ss_dssp CCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS
T ss_pred CCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCC
Confidence 4566 58887 6742 345555555433222 111 11 244555555555444 233 23444555555555
Q ss_pred cCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCc
Q 010041 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPK 215 (519)
Q Consensus 136 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 215 (519)
.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|++++ +|. .+++|++|++++|.+++ +|.
T Consensus 111 ~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 111 RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 4443 333 332 44555555444443 332 34444444444444443 332 23444444444444443 333
Q ss_pred ccCCcCccCeeeCCCCcCC
Q 010041 216 EIGSLRNLKELDLSSNKLG 234 (519)
Q Consensus 216 ~l~~l~~L~~L~l~~n~l~ 234 (519)
+. ++|+.|++++|.++
T Consensus 178 -l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp -CC--TTCCEEECCSSCCS
T ss_pred -hh--CCCCEEECcCCCCC
Confidence 32 44444444444444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8.5e-20 Score=188.21 Aligned_cols=186 Identities=27% Similarity=0.391 Sum_probs=85.2
Q ss_pred CCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEecc
Q 010041 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205 (519)
Q Consensus 126 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 205 (519)
+|+.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 33333 144444444444444 333 223444455555444443 333 332 44445554
Q ss_pred CCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccC
Q 010041 206 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSI 285 (519)
Q Consensus 206 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 285 (519)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 444443 332 34444455555444443 222 23444444444444443 333 22 44444455444444 23
Q ss_pred ChhccCCCCC-------CEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcC
Q 010041 286 PREIVNLKNL-------TSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGN 339 (519)
Q Consensus 286 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 339 (519)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 221 33 66666666665 34555555666666666666666555554443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.8e-19 Score=175.10 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=116.4
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCc-cccCCCCCCE-EEcc
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPI-EIGSVRNLET-LSLD 181 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~L~ 181 (519)
+.++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|. .|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777777776 456544 35788888888888755556778888888888888887665553 4677777664 5556
Q ss_pred CCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCC-CcCCCcCChhhccCC-CCceeecccccccC
Q 010041 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS-NKLGGVLPQEIENLK-SLTALSMDANNLGG 259 (519)
Q Consensus 182 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~~~-~L~~L~l~~n~l~~ 259 (519)
+|+++...|..|.++++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677778888888888888887755554555555666666644 334433333333332 35555555555542
Q ss_pred cCcccccCCCCcceeeccC-ccCcccCC-hhccCCCCCCEEeccCCccc
Q 010041 260 PIPSTLFRLTNIEYLSLGF-NRFNGSIP-REIVNLKNLTSLSLGGNKLT 306 (519)
Q Consensus 260 ~~~~~l~~~~~L~~L~l~~-n~~~~~~~-~~l~~~~~L~~L~l~~n~l~ 306 (519)
++.......+|+++++.+ |.+. .+| ..|..+++|++|++++|+++
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred -CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 222223334444444443 2222 222 23344444444444444444
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8e-19 Score=160.91 Aligned_cols=161 Identities=28% Similarity=0.314 Sum_probs=131.1
Q ss_pred CCCCCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCcc
Q 010041 61 TSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140 (519)
Q Consensus 61 ~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 140 (519)
....|.|.++.|...+ ++.+ +. .-.++|++|++++|.+++..+..|..+++|++|+|++|.++..
T Consensus 15 ~~~~Cs~~~v~c~~~~-l~~i------------p~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR-HASV------------PA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTSC-CSSC------------CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCCC-cCcc------------CC--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 4578999999996422 2111 11 2237899999999999988888899999999999999999866
Q ss_pred CCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCc
Q 010041 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL 220 (519)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 220 (519)
.+..|.++++|++|+|++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 6677889999999999999998766666788999999999999988 678888889999999999999887666678888
Q ss_pred CccCeeeCCCCcCCCcC
Q 010041 221 RNLKELDLSSNKLGGVL 237 (519)
Q Consensus 221 ~~L~~L~l~~n~l~~~~ 237 (519)
++|+.|++++|.+....
T Consensus 159 ~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTCCEEECTTSCBCTTB
T ss_pred CCCCEEEeeCCCccCCc
Confidence 88999999888877544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.7e-19 Score=184.09 Aligned_cols=148 Identities=25% Similarity=0.431 Sum_probs=66.0
Q ss_pred CCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEE
Q 010041 99 CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETL 178 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 178 (519)
.+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..| +..+++|++|+|++|.+.+ +| .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 344455555555544422 2 34445555555555554443322 4445555555555554442 12 34444455555
Q ss_pred EccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 179 SLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 179 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 5555544431 2344444444444444444432 234444444444444444443332 344444444444444443
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.5e-18 Score=158.03 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=102.9
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57888888888887766667788888888888888888777777888888888888888877554445677788888888
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
++|++++..|..|.++++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888877777777777778888888877776666667777777777777776653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=7.8e-19 Score=167.13 Aligned_cols=170 Identities=28% Similarity=0.415 Sum_probs=82.6
Q ss_pred CCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEE
Q 010041 123 SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWL 202 (519)
Q Consensus 123 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 202 (519)
.+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|++++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 445555555555555432 2 24555555555555555553322 5555555555555555543 22 35555555555
Q ss_pred eccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCc
Q 010041 203 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 282 (519)
Q Consensus 203 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 282 (519)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555555532 2344555555555555555443 234445555555555554443322 344444444444444443
Q ss_pred ccCChhccCCCCCCEEeccCCccc
Q 010041 283 GSIPREIVNLKNLTSLSLGGNKLT 306 (519)
Q Consensus 283 ~~~~~~l~~~~~L~~L~l~~n~l~ 306 (519)
+ ++ .+..+++|+.|++++|.+.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 2 11 2444444444444444443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=157.52 Aligned_cols=135 Identities=20% Similarity=0.238 Sum_probs=87.0
Q ss_pred CCCcEEECCCCccccccc-hhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 101 PNLQYLDLGSNNLSGSIP-SQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
+.+++|++++|.+++..+ ..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 345667777776665533 3466666677777766666665555666666666666666666655555566666666666
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
+++|++++..|..|.++++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66666666656666666666666666666666556666666666666666666554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.5e-18 Score=165.17 Aligned_cols=173 Identities=24% Similarity=0.383 Sum_probs=134.2
Q ss_pred CCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCC
Q 010041 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176 (519)
Q Consensus 97 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 176 (519)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ +| .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34567788888888887644 3 47778888888888888886443 7888888888888888875 33 478888888
Q ss_pred EEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccc
Q 010041 177 TLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANN 256 (519)
Q Consensus 177 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~ 256 (519)
+|++++|++++. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888888753 4677888888888888888754 567788888888888888887654 7788888888888888
Q ss_pred ccCcCcccccCCCCcceeeccCccCcc
Q 010041 257 LGGPIPSTLFRLTNIEYLSLGFNRFNG 283 (519)
Q Consensus 257 l~~~~~~~l~~~~~L~~L~l~~n~~~~ 283 (519)
+++. + .+..+++|+.|++++|.+..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8754 3 47788888888888887764
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.9e-18 Score=154.64 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=114.0
Q ss_pred CCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCE
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET 177 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 177 (519)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45677888888888877 445 5778888888888888654 3346778888888888888887767777888888888
Q ss_pred EEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccc
Q 010041 178 LSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 257 (519)
Q Consensus 178 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 257 (519)
|++++|++++..|..++++++|++|++++|...+.+| .+..+++|++|++++|.+++. + .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 8888888887777778888888888888887333455 577778888888888877753 2 566777777777777766
Q ss_pred cC
Q 010041 258 GG 259 (519)
Q Consensus 258 ~~ 259 (519)
++
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 53
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.8e-18 Score=178.86 Aligned_cols=174 Identities=26% Similarity=0.422 Sum_probs=144.0
Q ss_pred CCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEE
Q 010041 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155 (519)
Q Consensus 76 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 155 (519)
.+++.|++++..... .+.+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ +| .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC---ChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 356667777655443 3468889999999999999987654 8899999999999999985 33 688999999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCC
Q 010041 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 156 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 235 (519)
|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999853 4588899999999999999865 578899999999999999987655 8899999999999999987
Q ss_pred cCChhhccCCCCceeecccccccCcCccc
Q 010041 236 VLPQEIENLKSLTALSMDANNLGGPIPST 264 (519)
Q Consensus 236 ~~p~~l~~~~~L~~L~l~~n~l~~~~~~~ 264 (519)
. ..+..+++|+.|++++|.+.+.....
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred C--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 5 36888999999999999887654333
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.6e-18 Score=155.24 Aligned_cols=153 Identities=30% Similarity=0.361 Sum_probs=125.8
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (519)
+.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45666676665 4454443 78999999999999888888999999999999999997655566788999999999999
Q ss_pred cCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCc
Q 010041 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260 (519)
Q Consensus 184 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 260 (519)
++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 998777777888999999999999988 7788888889999999999988877767788888888888888877654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=170.09 Aligned_cols=158 Identities=31% Similarity=0.303 Sum_probs=125.5
Q ss_pred CCCcEEECCCCccccccchhhc-CCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEE
Q 010041 101 PNLQYLDLGSNNLSGSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 179 (519)
+.++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4688899999988877777777 888999999999988877777888889999999999988876666788888899999
Q ss_pred ccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCccc---CCcCccCeeeCCCCcCCCcCChhhccCCC--Cceeeccc
Q 010041 180 LDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI---GSLRNLKELDLSSNKLGGVLPQEIENLKS--LTALSMDA 254 (519)
Q Consensus 180 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~~~p~~l~~~~~--L~~L~l~~ 254 (519)
|++|++++..|..|.++++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+..++. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99998887778888888889999998888885433334 56788888888888888666666766665 36777777
Q ss_pred cccc
Q 010041 255 NNLG 258 (519)
Q Consensus 255 n~l~ 258 (519)
|.+.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.2e-18 Score=153.88 Aligned_cols=152 Identities=26% Similarity=0.364 Sum_probs=120.3
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (519)
+.+++++++++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56788888776 3454443 67888888888888777778888888888888888888777888888888888888888
Q ss_pred cCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 184 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888655556778888888888888888777777888888888888888888777767777778888888777664
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=5.7e-18 Score=154.11 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=120.8
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCC-ccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP-KEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
+.+++++|.++. +|..+. +.+++|++++|.+++..| ..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 478888888874 455443 456788888888887644 4577888888888888888877666788888888888888
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCc
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 260 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 260 (519)
|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888877777788888888888888888877777788888888888888888877777788888888888888776643
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=167.45 Aligned_cols=176 Identities=25% Similarity=0.236 Sum_probs=149.6
Q ss_pred EEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCcccc-CCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCC
Q 010041 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIG-SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183 (519)
Q Consensus 105 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (519)
.+++++++++. +|..+. +.++.|+|++|.+++..+..|. ++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45666666653 454443 4689999999999988888887 9999999999999999877788999999999999999
Q ss_pred cCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhh---ccCCCCceeecccccccCc
Q 010041 184 KLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI---ENLKSLTALSMDANNLGGP 260 (519)
Q Consensus 184 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l---~~~~~L~~L~l~~n~l~~~ 260 (519)
++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9998777789999999999999999998888899999999999999999997655555 5789999999999999977
Q ss_pred CcccccCCCC--cceeeccCccCcc
Q 010041 261 IPSTLFRLTN--IEYLSLGFNRFNG 283 (519)
Q Consensus 261 ~~~~l~~~~~--L~~L~l~~n~~~~ 283 (519)
.+..+..++. ++.|++++|.+..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 6677777776 4889999998763
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5e-18 Score=151.82 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=75.2
Q ss_pred cCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCE
Q 010041 122 DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQW 201 (519)
Q Consensus 122 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 201 (519)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..++++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666666 344 4566666666666666443 2234556666666666666666555555666666666
Q ss_pred EeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 202 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 202 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
|++++|.+++..|..++.+++|++|++++|.+.+.+| .+..+++|+.|++++|.++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 6666666655555555556666666666655222223 3445555555555555444
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.8e-18 Score=184.90 Aligned_cols=226 Identities=20% Similarity=0.204 Sum_probs=121.8
Q ss_pred CCCCcceeeeCCCCCEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCcccc---------ccchhhcCCCCCCEEEcc
Q 010041 63 DHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSG---------SIPSQIDSLSNLTYIYLY 133 (519)
Q Consensus 63 ~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------~~~~~l~~l~~L~~L~L~ 133 (519)
..+.|.+..+.. .+++.+++........ ... .|+.++|+.+.+.+ ..+..+..++.|+.|+|+
T Consensus 161 ~~~~~~~~~~s~-~~~~~l~L~~n~~~~~--~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 161 PSGTATNSAVST-PLTPKIELFANGKDEA--NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred ccccCCCceecC-CccceEEeeCCCCCcc--hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECC
Confidence 345687777754 5788888864333220 111 23333444433322 456788899999999999
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCC
Q 010041 134 ENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTI 213 (519)
Q Consensus 134 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 213 (519)
+|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+++++|++|+|++|.++ .+
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 99988 67777779999999999999998 88888999999999999999998 77889999999999999999987 77
Q ss_pred CcccCCcCccCeeeCCCCcCCCcCChhhccCCC-CceeecccccccCcCcccccCCCCcceeeccCc--------cCccc
Q 010041 214 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS-LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFN--------RFNGS 284 (519)
Q Consensus 214 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n--------~~~~~ 284 (519)
|..|+.+++|+.|+|++|.+++.+|..+..+.. +..+++.+|.+++.+|.. |+.|+++.| .+.+.
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~ 382 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQS 382 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcccc
Confidence 888999999999999999999988887755432 234778899988887764 345555555 22222
Q ss_pred CChhccCCCCCCEEeccCCccc
Q 010041 285 IPREIVNLKNLTSLSLGGNKLT 306 (519)
Q Consensus 285 ~~~~l~~~~~L~~L~l~~n~l~ 306 (519)
.+..+..+..+....++.|.+.
T Consensus 383 ~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 383 TEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------CCC
T ss_pred ccchhhcccccceeeeeccccc
Confidence 2333344455555566666554
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=7.8e-20 Score=189.45 Aligned_cols=216 Identities=22% Similarity=0.192 Sum_probs=140.3
Q ss_pred CCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCcee
Q 010041 171 SVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 250 (519)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L 250 (519)
.+++|+.|+|++|++. .+|..++++++|+.|++++|......|.. +. .+...+..|..++.+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------l~-----~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------MR-----ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HH-----HHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------HH-----hcccccCCHHHHHHHHhcccC
Confidence 3455555555555554 44555555555555555433210000000 00 011334556666666677766
Q ss_pred e-cccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCcc
Q 010041 251 S-MDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 329 (519)
Q Consensus 251 ~-l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 329 (519)
+ ++.|.+ ..|..+.+++|.+.. ++. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.+
T Consensus 415 ~~l~~n~~-----------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 415 DPMRAAYL-----------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp CGGGHHHH-----------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred cchhhccc-----------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 6 444432 234445555555543 221 248888888888875 555 78888888888888888
Q ss_pred ccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCcccc-chhhhcccCCCEEEccCCccccccccc
Q 010041 330 HSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQI-PFAIGKLFNLASLDLSKNKLSGSIPTE 408 (519)
Q Consensus 330 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~ 408 (519)
+ .+|..++.+++|+.|++++|++++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|++++..|..
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8 677788888888888888888886 55 7888888888888888888776 888888888999999999888765432
Q ss_pred ---cccCCCCCEEEc
Q 010041 409 ---IGNCSELRNLTL 420 (519)
Q Consensus 409 ---l~~l~~L~~L~l 420 (519)
+..+++|+.|++
T Consensus 553 ~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ERLAEMLPSVSSILT 567 (567)
T ss_dssp THHHHHCTTCSEEEC
T ss_pred HHHHHHCcccCccCC
Confidence 334788888764
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.3e-18 Score=184.00 Aligned_cols=218 Identities=26% Similarity=0.260 Sum_probs=124.6
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEE-----cccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCC
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIY-----LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNL 175 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~-----L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 175 (519)
+.++.|+|.++.+... +..+.....|+.+. +..|.+. ..|..|..++.|+.|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5688899988888753 33333333333333 2233333 45778899999999999999998 778888899999
Q ss_pred CEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccc
Q 010041 176 ETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 255 (519)
Q Consensus 176 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n 255 (519)
++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999998 88999999999999999999999 78999999999999999999997 66888999999999999999
Q ss_pred cccCcCcccccCCCC-cceeeccCccCcccCChhccCCCCCCEEeccCC--------cccccCCCCCCCCCCCcEEeCcC
Q 010041 256 NLGGPIPSTLFRLTN-IEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN--------KLTGHIPSTLGRLTSLQILDLSS 326 (519)
Q Consensus 256 ~l~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~ 326 (519)
.+++.+|..+..... ...+++.+|.+++.+|. .|+.|+++.| .+.+..+..+..+..+....++.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 999988887755422 23478899999888775 4556666666 22333333344455556666666
Q ss_pred Cccc
Q 010041 327 NQLH 330 (519)
Q Consensus 327 n~l~ 330 (519)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 6653
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.3e-17 Score=156.17 Aligned_cols=167 Identities=26% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEcc
Q 010041 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD 181 (519)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 181 (519)
++..++++++.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444444444444221 34445555555555555542 23 34445555555555555543222 4455555555555
Q ss_pred CCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcC
Q 010041 182 GNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 182 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
+|++++ +|. +.. ++|++|++++|.+++. ..++.+++|++|++++|.++ +.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~------------------------~~- 143 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK------------------------SI- 143 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC------------------------BC-
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC------------------------CC-
Confidence 555443 221 111 4444444444444421 12444444444444444443 32
Q ss_pred cccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccc
Q 010041 262 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG 307 (519)
Q Consensus 262 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 307 (519)
+ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 1 344444555555555555433 345555666666666666553
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.3e-19 Score=187.68 Aligned_cols=204 Identities=21% Similarity=0.231 Sum_probs=118.6
Q ss_pred CCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCc-------------CCccCCccccCCCCCCEEE-ccCCCCCc
Q 010041 98 SCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN-------------LTGTIPKEIGSLRNLEVLD-LGSNNLNG 163 (519)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-------------~~~~~p~~~~~l~~L~~L~-L~~n~l~~ 163 (519)
...++|+.|+|++|.++ .+|..+++|++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777777777775 567777777777777775553 3344445555555555555 3333211
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhcc
Q 010041 164 TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIEN 243 (519)
Q Consensus 164 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 243 (519)
+|+.+.+++|.++.. |. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.
T Consensus 424 ----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 111222222232211 10 236666666666664 454 666666666666666666 45666666
Q ss_pred CCCCceeecccccccCcCcccccCCCCcceeeccCccCcccC-ChhccCCCCCCEEeccCCcccccCCCC---CCCCCCC
Q 010041 244 LKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSI-PREIVNLKNLTSLSLGGNKLTGHIPST---LGRLTSL 319 (519)
Q Consensus 244 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L 319 (519)
+++|+.|++++|.+++ +| .+.++++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+..+.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 6666666666666665 44 5666667777777777666554 666777777777777777776543321 1225667
Q ss_pred cEEeC
Q 010041 320 QILDL 324 (519)
Q Consensus 320 ~~L~l 324 (519)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 66653
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.6e-17 Score=154.13 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=115.5
Q ss_pred CCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEe
Q 010041 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLD 203 (519)
Q Consensus 124 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 203 (519)
+.++..++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445556666666666432 4556667777777776665 333 45666666666666666654332 56666666666
Q ss_pred ccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcc
Q 010041 204 LSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 283 (519)
Q Consensus 204 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 283 (519)
+++|.+++ +|. +. . ++|+.|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~-l~~-~~------------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IP------------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSC-CTT-CC------------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-cc------------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 66666553 221 11 1 4555555555555542 246678889999999999886
Q ss_pred cCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccC
Q 010041 284 SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 332 (519)
Q Consensus 284 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 332 (519)
. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 3 688999999999999999876 6788999999999999999865
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.1e-16 Score=140.53 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=52.6
Q ss_pred CCcEEECCCCccccccch-hhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 102 NLQYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
+|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555443332 2444555555555555555444444555555555555555554444444444444555555
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLS 210 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 210 (519)
++|++++..|..+..+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555444444444444444444444444444
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.1e-17 Score=157.63 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCCcEEECCCCccccccchhhcC-CCCCCEEEcccCcCC--ccCCccccCCCCCCEEEccCCCCCccCCccccC-----
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDS-LSNLTYIYLYENNLT--GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS----- 171 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----- 171 (519)
+++++.|.++++ +.......+.. +++|++|+|++|++. ...+..+ +.++.+.+..|.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccccc
Confidence 556777777653 22111223333 677888888888776 2222222 22344444444221 223445
Q ss_pred ---CCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCC
Q 010041 172 ---VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS 230 (519)
Q Consensus 172 ---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 230 (519)
+++|+.+++.+ +++..-+..|.++++|+.+++++|.+....+..|..+.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77788888777 66655556677777788888877777655556666666666665554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.3e-16 Score=138.63 Aligned_cols=132 Identities=26% Similarity=0.270 Sum_probs=66.1
Q ss_pred CCCCEEEcccCcCC-ccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEe
Q 010041 125 SNLTYIYLYENNLT-GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLD 203 (519)
Q Consensus 125 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 203 (519)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 34444444455555555555554433 3444555555555555555544444444455555555
Q ss_pred ccCCcCCCCC-CcccCCcCccCeeeCCCCcCCCcCC---hhhccCCCCceeeccccccc
Q 010041 204 LSSNKLSGTI-PKEIGSLRNLKELDLSSNKLGGVLP---QEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 204 l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~~~~L~~L~l~~n~l~ 258 (519)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554321 1345555555555555555554433 34555556666666555543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.2e-16 Score=136.25 Aligned_cols=135 Identities=23% Similarity=0.262 Sum_probs=112.1
Q ss_pred CCCCCcEEECCCCccc-cccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCE
Q 010041 99 CFPNLQYLDLGSNNLS-GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET 177 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 177 (519)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999987 67788888899999999999988865 67888999999999999998777777777899999
Q ss_pred EEccCCcCcccC-chhccCCCCCCEEeccCCcCCCCCC---cccCCcCccCeeeCCCCcCCC
Q 010041 178 LSLDGNKLSGTI-PIEIESLRNLQWLDLSSNKLSGTIP---KEIGSLRNLKELDLSSNKLGG 235 (519)
Q Consensus 178 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~ 235 (519)
|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999887642 2678889999999999999886554 478888999999998887763
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.2e-17 Score=136.97 Aligned_cols=127 Identities=25% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCCCEEEcccCcCC-ccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEe
Q 010041 125 SNLTYIYLYENNLT-GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLD 203 (519)
Q Consensus 125 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 203 (519)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666666555 45555555666666666666666543 4455666666666666666655555555566666666
Q ss_pred ccCCcCCCC-CCcccCCcCccCeeeCCCCcCCCcCC---hhhccCCCCceeecc
Q 010041 204 LSSNKLSGT-IPKEIGSLRNLKELDLSSNKLGGVLP---QEIENLKSLTALSMD 253 (519)
Q Consensus 204 l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~~~~L~~L~l~ 253 (519)
+++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23456666666666666666665544 456666677766654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2e-16 Score=134.57 Aligned_cols=129 Identities=23% Similarity=0.316 Sum_probs=100.0
Q ss_pred CCCCCcEEECCCCccc-cccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCE
Q 010041 99 CFPNLQYLDLGSNNLS-GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLET 177 (519)
Q Consensus 99 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 177 (519)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 67777778888888888888888765 66778888888888888887767776777888888
Q ss_pred EEccCCcCccc-CchhccCCCCCCEEeccCCcCCCCCC---cccCCcCccCeeeCC
Q 010041 178 LSLDGNKLSGT-IPIEIESLRNLQWLDLSSNKLSGTIP---KEIGSLRNLKELDLS 229 (519)
Q Consensus 178 L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~ 229 (519)
|++++|++++. .+..+..+++|++|++++|.+++..+ ..++.+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888753 34677888888888888888876554 467778888888775
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=5.6e-16 Score=137.76 Aligned_cols=131 Identities=27% Similarity=0.358 Sum_probs=100.3
Q ss_pred cEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCc-cccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPK-EIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 104 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
+.+++++++++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888875 45554433 788888888888766554 477888888888888888877777788888888888888
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcC
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVL 237 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 237 (519)
|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 8888777777778888888888888888777777777788888888887776543
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.5e-16 Score=151.68 Aligned_cols=264 Identities=16% Similarity=0.154 Sum_probs=160.9
Q ss_pred CCCCcEEECCCCccc--cccchhhcCCCCCCEEEcccCcCCccCCccccC--------CCCCCEEEccCCCCCccCCccc
Q 010041 100 FPNLQYLDLGSNNLS--GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGS--------LRNLEVLDLGSNNLNGTIPIEI 169 (519)
Q Consensus 100 l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~l 169 (519)
+++|+.|||++|++. ......+ +.++.+.+..+.+ .+..|.+ +++|+.|++.+ .++..-+..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 789999999999987 2222222 2245555555532 2245556 99999999998 7876666779
Q ss_pred cCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcC----CCCCCcccCCcCccC-eeeCCCCcCCCcCChhhccC
Q 010041 170 GSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKL----SGTIPKEIGSLRNLK-ELDLSSNKLGGVLPQEIENL 244 (519)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l----~~~~p~~l~~l~~L~-~L~l~~n~l~~~~p~~l~~~ 244 (519)
.++++|+.+++++|.+....+..|.++.++..+.+..+.. ...-...+..+.+|+ .+.+.... .++..+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~- 196 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMK- 196 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHH-
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhh-
Confidence 9999999999999998877778888887777776655321 111122333444444 33332211 11111100
Q ss_pred CCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeC
Q 010041 245 KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 324 (519)
Q Consensus 245 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 324 (519)
.-....++..+.+.++-...........+++|+++++++|.+....+..|..+++|+.+++
T Consensus 197 -------------------~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 197 -------------------AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp -------------------TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------------cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 0001222333333322111011111123567777777777776655666777777777777
Q ss_pred cCCccccCCchhhcCCCCCC-EEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEE
Q 010041 325 SSNQLHSSIPLVIGNFSALS-YLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLD 395 (519)
Q Consensus 325 ~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 395 (519)
.+| +....+.+|.++++|+ .+++.+ .++...+..|..|++|+.++++.|.++...+.+|.++++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 776 5555556677777777 777777 56656667777777788887777777766666777777777775
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.8e-15 Score=131.39 Aligned_cols=112 Identities=25% Similarity=0.259 Sum_probs=66.0
Q ss_pred CCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEc
Q 010041 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180 (519)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 180 (519)
++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56667777766666555555666666666666666666554455566666666666666665544444555666666666
Q ss_pred cCCcCcccCchhccCCCCCCEEeccCCcCCCC
Q 010041 181 DGNKLSGTIPIEIESLRNLQWLDLSSNKLSGT 212 (519)
Q Consensus 181 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 212 (519)
++|++++..+..+..+++|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66666544333345555555555555555543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=132.05 Aligned_cols=107 Identities=28% Similarity=0.439 Sum_probs=48.1
Q ss_pred CCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEecc
Q 010041 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLS 205 (519)
Q Consensus 126 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 205 (519)
+|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444443 333444444444444444444444333344444444444444444444444444444444444444
Q ss_pred CCcCCCCCCcccCCcCccCeeeCCCCcC
Q 010041 206 SNKLSGTIPKEIGSLRNLKELDLSSNKL 233 (519)
Q Consensus 206 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l 233 (519)
+|.++...+..+..+++|+.|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444444555544444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.6e-15 Score=129.02 Aligned_cols=114 Identities=24% Similarity=0.222 Sum_probs=92.6
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 68899999999888776677888899999999999888666666788888999999999888776666788888888888
Q ss_pred cCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCC
Q 010041 205 SSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP 238 (519)
Q Consensus 205 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 238 (519)
++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888886555556778888888888888776544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1e-13 Score=137.42 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=139.6
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
..++.+.+.++ ++..-..+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .+...-+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44445554332 333333444443 4555555433 332333334442 455555543 333333344555555555555
Q ss_pred cCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCccc
Q 010041 205 SSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 284 (519)
Q Consensus 205 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 284 (519)
..|.++......|. +.+|+.+.+..+ +...-..+|.++++|+.+.+..+ +.......+.+ .+|+.+.+. +.+...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 55555422222232 355555555432 33333445555555555555543 22222233333 556666663 334433
Q ss_pred CChhccCCCCCCEEeccCCccc-----ccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCC
Q 010041 285 IPREIVNLKNLTSLSLGGNKLT-----GHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 359 (519)
Q Consensus 285 ~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 359 (519)
-...|.++++|+.+++.+|.+. ...+..|..+++|+.+.+.+ .+......+|.++.+|+.+.+..+ ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4456666677777776665543 23445667777777777763 355455566777777777777554 5555556
Q ss_pred CCCCCCCCcEEEccCccCccccchhhhccc-CCCEEEccCCcc
Q 010041 360 ELTKLSHLKYLNLSSNLLSGQIPFAIGKLF-NLASLDLSKNKL 401 (519)
Q Consensus 360 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l 401 (519)
.|..+ +|+.+++.+|.+.......+.+++ .++.|++..+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 67777 777777777766654455555553 567777665543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.4e-15 Score=129.78 Aligned_cols=127 Identities=27% Similarity=0.395 Sum_probs=100.6
Q ss_pred CEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCC
Q 010041 128 TYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSN 207 (519)
Q Consensus 128 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 207 (519)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777776 4565443 57888888888887 66777888888888888888888777777888888888888888
Q ss_pred cCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeeccccccc
Q 010041 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 258 (519)
Q Consensus 208 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 258 (519)
.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888777777888888888888888888766666777888888888877765
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.2e-13 Score=136.87 Aligned_cols=266 Identities=11% Similarity=0.102 Sum_probs=188.5
Q ss_pred CCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCee
Q 010041 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 226 (519)
Q Consensus 147 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 226 (519)
.+..++.+.+.+ .++..-...|.++ +|+.+.+..+ +...-...|.+ .+|+.+.+.. .+...-+..|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346777777764 3444445556664 7888888766 65555566766 4688888875 5554445678888888888
Q ss_pred eCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCccc
Q 010041 227 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLT 306 (519)
Q Consensus 227 ~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 306 (519)
++..|++.......|. ..+|+.+.+..+ +.......+.++++|+.+.+..+ +...-..+|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 8888887765555665 578888888744 55555667778888888888764 44344455655 678888884 3455
Q ss_pred ccCCCCCCCCCCCcEEeCcCCccc-----cCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCcccc
Q 010041 307 GHIPSTLGRLTSLQILDLSSNQLH-----SSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQI 381 (519)
Q Consensus 307 ~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 381 (519)
......|..+++|+.+.+.+|.+. ...+.+|.++++|+.+.+.+ .++......|..|++|+.+.+..+ ++..-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 555677888888888888877664 34456778888888888884 466666677888888888888654 55555
Q ss_pred chhhhcccCCCEEEccCCccccccccccccCC-CCCEEEccCCcc
Q 010041 382 PFAIGKLFNLASLDLSKNKLSGSIPTEIGNCS-ELRNLTLNHNSL 425 (519)
Q Consensus 382 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l 425 (519)
..+|.++ +|+.+++.+|.+....+..|.+++ .++.+.+..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6678888 888888888887766666777774 677777776544
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=3.4e-13 Score=134.05 Aligned_cols=315 Identities=13% Similarity=0.074 Sum_probs=219.2
Q ss_pred cCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccC
Q 010041 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS 171 (519)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 171 (519)
++..+|.++.+|+.+.+.. +++..-..+|.+|++|+.+++.++ +...-..+|.++++|+.+.+..+ +.......|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 4577899999999999974 466555678999999999999765 55455667888999998877654 33334445666
Q ss_pred CCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceee
Q 010041 172 VRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 251 (519)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~ 251 (519)
+..++....... ...-...|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......+.++..|+.+.
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 554333333222 22334578888999999987653 2233456778889999988765 4444456778888888888
Q ss_pred cccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCcccc
Q 010041 252 MDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 331 (519)
Q Consensus 252 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 331 (519)
+..+... +.........|+.+.+... ....-...+..+..++.+.+..+... .....+..+..++.+....+.+.
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 7665322 2233445567787777543 22233456777888888888776443 44566778888888877665432
Q ss_pred CCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCcccccccccccc
Q 010041 332 SIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGN 411 (519)
Q Consensus 332 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 411 (519)
...+..+.+|+.+.+.++ ++......|..+.+|+.+++..+ ++..-..+|.+|.+|+.+++..+ +......+|.+
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 345677888999888765 55555677888899999998754 55455678888999999998766 66566678889
Q ss_pred CCCCCEEEccCC
Q 010041 412 CSELRNLTLNHN 423 (519)
Q Consensus 412 l~~L~~L~l~~n 423 (519)
|.+|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999988653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.7e-14 Score=126.26 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=72.3
Q ss_pred hcCCCCCCEEEcccCcCCccCCccccCC-CCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCC
Q 010041 121 IDSLSNLTYIYLYENNLTGTIPKEIGSL-RNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNL 199 (519)
Q Consensus 121 l~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 199 (519)
+.++++|++|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445555555555555552 333 2222 3666666666666543 345566666666666666654433334566666
Q ss_pred CEEeccCCcCCCCCCc--ccCCcCccCeeeCCCCcCCCcCCh----hhccCCCCceeecccccc
Q 010041 200 QWLDLSSNKLSGTIPK--EIGSLRNLKELDLSSNKLGGVLPQ----EIENLKSLTALSMDANNL 257 (519)
Q Consensus 200 ~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~----~l~~~~~L~~L~l~~n~l 257 (519)
++|++++|.+. .+|. .+..+++|+.|++++|.++.. |. .+..+++|+.|+++.|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666664 3343 455666666666666666532 33 255566666666665543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.1e-14 Score=127.38 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=112.8
Q ss_pred CCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCC
Q 010041 94 RLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR 173 (519)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 173 (519)
...+..+++|+.|++++|.++. ++......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HHhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3456678899999999999984 454333344999999999999975 6789999999999999999865444458999
Q ss_pred CCCEEEccCCcCcccCch--hccCCCCCCEEeccCCcCCCCCCcc----cCCcCccCeeeCCCCcCC
Q 010041 174 NLETLSLDGNKLSGTIPI--EIESLRNLQWLDLSSNKLSGTIPKE----IGSLRNLKELDLSSNKLG 234 (519)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~ 234 (519)
+|++|++++|+++ .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999996 5565 7889999999999999998 45654 888999999999998765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=6.3e-17 Score=144.76 Aligned_cols=134 Identities=26% Similarity=0.343 Sum_probs=83.9
Q ss_pred CCCCcEEECCCCccccccch------hhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCC
Q 010041 100 FPNLQYLDLGSNNLSGSIPS------QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR 173 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 173 (519)
.+.++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34455555555555555444 67777777777777777765 55 6666777777777777766 4555555566
Q ss_pred CCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCC-cccCCcCccCeeeCCCCcCCCcCC
Q 010041 174 NLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIP-KEIGSLRNLKELDLSSNKLGGVLP 238 (519)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p 238 (519)
+|++|++++|++++ +| .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.+|
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77777777777664 33 46666677777777776663221 345666666666666666654433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.1e-16 Score=143.10 Aligned_cols=137 Identities=25% Similarity=0.303 Sum_probs=93.4
Q ss_pred hhcCCCCCCEEEcccCcCCccCCc------cccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhc
Q 010041 120 QIDSLSNLTYIYLYENNLTGTIPK------EIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEI 193 (519)
Q Consensus 120 ~l~~l~~L~~L~L~~n~~~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 193 (519)
.+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 355667777888888888777766 67777888888888777765 55 6777777788888777776 556666
Q ss_pred cCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCC-hhhccCCCCceeecccccccCcC
Q 010041 194 ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP-QEIENLKSLTALSMDANNLGGPI 261 (519)
Q Consensus 194 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~~~ 261 (519)
..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 666777777777777764 33 46666777777777776664322 34556666666666666655443
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=5.3e-12 Score=125.39 Aligned_cols=322 Identities=14% Similarity=0.096 Sum_probs=225.0
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEc
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 156 (519)
.++++.++.. ...++..+|.++++|+.+++..+ ++.....+|.++..|+.+.+..+ +...-..+|.++..+.....
T Consensus 72 ~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 72 KVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 6888888743 22355789999999999999754 55455678999999999888654 44455566777654443333
Q ss_pred cCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCc
Q 010041 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV 236 (519)
Q Consensus 157 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 236 (519)
... .......|.++.+|+.+.+.++. ...-...|.++++|+.+.+..+ +.......+.++..|+.+.+..+...
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred ccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--
Confidence 222 22334568889999999997654 3345567888999999998765 44333456788888998888765322
Q ss_pred CChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCCCC
Q 010041 237 LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRL 316 (519)
Q Consensus 237 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 316 (519)
+.+......+|+.+.+... +.......+..+..++.+.+..+... .....+..+..++.+......+. ...+..+
T Consensus 222 i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~ 296 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGC 296 (394)
T ss_dssp ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTC
T ss_pred eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccc
Confidence 2233345567888877543 23333455677888888888766433 44566778888888887665432 3467788
Q ss_pred CCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEc
Q 010041 317 TSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDL 396 (519)
Q Consensus 317 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 396 (519)
.+|+.+.+..+ +......+|.++.+|+.+++.++ ++......|..|.+|+.+++..+ ++..-..+|.+|.+|+.+++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 99999988765 55455667888999999999754 66566678899999999999876 66555678899999999998
Q ss_pred cCCccccccccccccCCCCCEE
Q 010041 397 SKNKLSGSIPTEIGNCSELRNL 418 (519)
Q Consensus 397 ~~n~l~~~~~~~l~~l~~L~~L 418 (519)
..+- . .+...|.++++|+.+
T Consensus 374 p~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCCC-E-EhhheecCCCCCcEE
Confidence 7552 2 234567788877754
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.4e-13 Score=115.75 Aligned_cols=86 Identities=27% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEec
Q 010041 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDL 204 (519)
Q Consensus 125 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 204 (519)
++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555444444555555555555555554333333444555555555555554433333444444444444
Q ss_pred cCCcCC
Q 010041 205 SSNKLS 210 (519)
Q Consensus 205 ~~n~l~ 210 (519)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1e-12 Score=114.07 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=85.3
Q ss_pred CCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccC
Q 010041 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSS 206 (519)
Q Consensus 127 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 206 (519)
.+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777 4665553 7888888888888877787888888888888888888876666678888888888888
Q ss_pred CcCCCCCCcccCCcCccCeeeCCCCcCCCcC
Q 010041 207 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVL 237 (519)
Q Consensus 207 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 237 (519)
|++++..+..+..+++|++|++++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888766666888888888888888876543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=114.37 Aligned_cols=103 Identities=23% Similarity=0.317 Sum_probs=51.8
Q ss_pred EEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCc
Q 010041 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184 (519)
Q Consensus 105 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 184 (519)
.++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4444454443 3333332 455555555555555555555555555555555555554333334555555555555555
Q ss_pred CcccCchhccCCCCCCEEeccCCcCC
Q 010041 185 LSGTIPIEIESLRNLQWLDLSSNKLS 210 (519)
Q Consensus 185 l~~~~p~~l~~l~~L~~L~l~~n~l~ 210 (519)
+++..+..|.++++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433333555555555555555544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.6e-12 Score=113.16 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=84.3
Q ss_pred CEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCC
Q 010041 128 TYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSN 207 (519)
Q Consensus 128 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 207 (519)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 5676554 78888888888888777878888888888888888888665556778888888888888
Q ss_pred cCCCCCCcccCCcCccCeeeCCCCcCCCc
Q 010041 208 KLSGTIPKEIGSLRNLKELDLSSNKLGGV 236 (519)
Q Consensus 208 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 236 (519)
.+++..+..+..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88865555578888888888888877643
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=9e-11 Score=116.47 Aligned_cols=319 Identities=11% Similarity=0.117 Sum_probs=186.1
Q ss_pred cCCCCCCCCC-CCcEEECCCCccccccchhhcCCCCCCEEEcccCc---CCccCCccccCCCCCCEEEccCCCCCccCCc
Q 010041 92 LGRLNFSCFP-NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENN---LTGTIPKEIGSLRNLEVLDLGSNNLNGTIPI 167 (519)
Q Consensus 92 ~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~---~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 167 (519)
++..+|..++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +......
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 4567788775 5899988653 555556789999999999987763 55445567888888888887654 4434445
Q ss_pred cccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCC
Q 010041 168 EIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 247 (519)
Q Consensus 168 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L 247 (519)
.+.++.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...|. ..+|+.+.+..+- .......+..+.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccc
Confidence 6788889999988754 33344566788888888888754 3212222333 3568888776542 22334456667777
Q ss_pred ceeecccccccCcCcccc-------------cCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCcccccCCCCCC
Q 010041 248 TALSMDANNLGGPIPSTL-------------FRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 314 (519)
Q Consensus 248 ~~L~l~~n~l~~~~~~~l-------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 314 (519)
+......+.....-...+ .....+..+.+.. .+...-...|..+..|+.+.+..+... .....+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 766654433221100000 0111222222211 112222345666777777777654332 3345566
Q ss_pred CCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEE
Q 010041 315 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASL 394 (519)
Q Consensus 315 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 394 (519)
.+++|+.+.+. +.+......+|.++.+|+.+.+..+ ++......|..|.+|+.+.+..+ ++..-..+|.+|.+|+.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 77777777775 3344344556777777777777654 44444566777777777777544 444445667777777777
Q ss_pred EccCCccccccccccccCCCCCEEEccCCc
Q 010041 395 DLSKNKLSGSIPTEIGNCSELRNLTLNHNS 424 (519)
Q Consensus 395 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 424 (519)
++.++.... ..+..+..|+.+.+..+.
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC---------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 777665331 345556667766665543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=9.3e-14 Score=136.30 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=92.9
Q ss_pred CCCCcEEECCCCccccccchhhcC-----CCCCCEEEcccCcCCccCCccc-cCCCCCCEEEccCCCCCccCCccc----
Q 010041 100 FPNLQYLDLGSNNLSGSIPSQIDS-----LSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNLNGTIPIEI---- 169 (519)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l---- 169 (519)
++.|+.|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356778888888876543333322 2678888888887764322222 235567777777777754332222
Q ss_pred -cCCCCCCEEEccCCcCccc----CchhccCCCCCCEEeccCCcCCCC----CCcccCCcCccCeeeCCCCcCCCc----
Q 010041 170 -GSVRNLETLSLDGNKLSGT----IPIEIESLRNLQWLDLSSNKLSGT----IPKEIGSLRNLKELDLSSNKLGGV---- 236 (519)
Q Consensus 170 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~---- 236 (519)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+...++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356777777777777532 333445667777777777776532 133344555666666666666532
Q ss_pred CChhhccCCCCceeecccccccC
Q 010041 237 LPQEIENLKSLTALSMDANNLGG 259 (519)
Q Consensus 237 ~p~~l~~~~~L~~L~l~~n~l~~ 259 (519)
++..+...++|++|++++|.+++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 22233344556666666555543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=4.2e-13 Score=131.65 Aligned_cols=143 Identities=18% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCcceeeccCccCcccCChhc-cCCCCCCEEeccCCcccccCCCCC-----CCCCCCcEEeCcCCccccC----Cchhhc
Q 010041 269 TNIEYLSLGFNRFNGSIPREI-VNLKNLTSLSLGGNKLTGHIPSTL-----GRLTSLQILDLSSNQLHSS----IPLVIG 338 (519)
Q Consensus 269 ~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~ 338 (519)
++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+ ...++|++|++++|.+... ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 344555555554432211111 123355566666665543222221 2345666666666666432 233345
Q ss_pred CCCCCCEEECcCCcCccc----CCCCCCCCCCCcEEEccCccCccc----cchhhhcccCCCEEEccCCccccccccccc
Q 010041 339 NFSALSYLDLSDNRICGI----IPDELTKLSHLKYLNLSSNLLSGQ----IPFAIGKLFNLASLDLSKNKLSGSIPTEIG 410 (519)
Q Consensus 339 ~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 410 (519)
..++|++|++++|.+++. +...+...++|++|+|++|.+++. +...+...++|++|+|++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 566777777777776642 233345556777777777777643 333445567788888888877765554444
Q ss_pred c
Q 010041 411 N 411 (519)
Q Consensus 411 ~ 411 (519)
.
T Consensus 261 ~ 261 (372)
T 3un9_A 261 D 261 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=3.1e-09 Score=105.37 Aligned_cols=298 Identities=9% Similarity=0.096 Sum_probs=208.1
Q ss_pred ccchhhcCCC-CCCEEEcccCcCCccCCccccCCCCCCEEEccCCC---CCccCCccccCCCCCCEEEccCCcCcccCch
Q 010041 116 SIPSQIDSLS-NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN---LNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191 (519)
Q Consensus 116 ~~~~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 191 (519)
.-..+|.+++ .|+.+.+..+ ++.+-..+|.++.+|+.+.+..|. ++..-...|.++.+|+.+.+..+ ++..-..
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3456788885 5999999765 766677889999999999998764 44344556888999999888765 4445556
Q ss_pred hccCCCCCCEEeccCCcCCCCCCcccCCcCccCeeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCc
Q 010041 192 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNI 271 (519)
Q Consensus 192 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 271 (519)
.|.++.+|+.+.+..+ +.......+..+.+|+.+.+..+ +...-..+|. ..+|+.+.+..+. .......+.++..+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccc
Confidence 7889999999999754 33233456788899999999764 3333334554 3578888876542 22334456667777
Q ss_pred ceeeccCccCcccCCh--------------hccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhh
Q 010041 272 EYLSLGFNRFNGSIPR--------------EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 337 (519)
Q Consensus 272 ~~L~l~~n~~~~~~~~--------------~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 337 (519)
............ ... .+.....+..+.+.. .+...-...|..+..|+.+.+..+... ....++
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF 284 (394)
T 4gt6_A 208 STITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF 284 (394)
T ss_dssp CEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT
T ss_pred ceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccc
Confidence 766654433221 110 111223445555543 233344567888999999998765442 455678
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchhhhcccCCCEEEccCCccccccccccccCCCCCE
Q 010041 338 GNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRN 417 (519)
Q Consensus 338 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 417 (519)
.++..|+.+.+.. .++......|..|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.
T Consensus 285 ~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 8899999999964 566566678999999999999865 55455678999999999999654 66566788999999999
Q ss_pred EEccCCcc
Q 010041 418 LTLNHNSL 425 (519)
Q Consensus 418 L~l~~n~l 425 (519)
+++.++..
T Consensus 362 i~~~~~~~ 369 (394)
T 4gt6_A 362 IEYSGSRS 369 (394)
T ss_dssp EEESSCHH
T ss_pred EEECCcee
Confidence 99988643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.8e-11 Score=117.11 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCCCCCCcEEECCC-CccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCC
Q 010041 97 FSCFPNLQYLDLGS-NNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNL 175 (519)
Q Consensus 97 ~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 175 (519)
+..+++|+.|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 55666666666664 666655556666666666666666666666666666666666666666666543333333333 6
Q ss_pred CEEEccCCcCc
Q 010041 176 ETLSLDGNKLS 186 (519)
Q Consensus 176 ~~L~L~~n~l~ 186 (519)
+.|+|.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666666554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=6.9e-11 Score=115.23 Aligned_cols=104 Identities=24% Similarity=0.229 Sum_probs=68.3
Q ss_pred EEECCCC-ccccccchhhcCCCCCCEEEccc-CcCCccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 105 YLDLGSN-NLSGSIPSQIDSLSNLTYIYLYE-NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 105 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
.++++++ +++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 5653 555 77777777777774 777766666677777777777777777766666667777777777777
Q ss_pred CcCcccCchhccCCCCCCEEeccCCcCCC
Q 010041 183 NKLSGTIPIEIESLRNLQWLDLSSNKLSG 211 (519)
Q Consensus 183 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 211 (519)
|++++..+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777654444444444 6667766666653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=4.2e-08 Score=96.65 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=41.9
Q ss_pred ccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCc
Q 010041 289 IVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLK 368 (519)
Q Consensus 289 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 368 (519)
+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +......++.++.+|+.+.+.++.++......|..|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444332 22222333444444444444322 2222223344444444444444444433334444444444
Q ss_pred EEEccCccCccccchhhhcccCCCEEEc
Q 010041 369 YLNLSSNLLSGQIPFAIGKLFNLASLDL 396 (519)
Q Consensus 369 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l 396 (519)
.+.+..+ ++..-..+|.+|.+|+.+.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4444322 22222334444444444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=7.5e-08 Score=94.80 Aligned_cols=298 Identities=12% Similarity=0.085 Sum_probs=190.3
Q ss_pred CEEEEEcCCCceecccCCCCCCCCCCCcEEECCCCccccccchhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEc
Q 010041 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156 (519)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 156 (519)
.++++.+... ...++..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-..+|..+ +|+.+.+
T Consensus 47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 4666666532 22345778888889999888643 554555677777 6777777544 443444456554 7888888
Q ss_pred cCCCCCccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCCC------------CCCcccCCcCccC
Q 010041 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLSG------------TIPKEIGSLRNLK 224 (519)
Q Consensus 157 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~------------~~p~~l~~l~~L~ 224 (519)
..+. .......+.++ +|+.+.+..+ ++..-...|..+..++.+.+..+.... .....+.....+.
T Consensus 121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 6542 22223334443 5666666543 333444566777788877776543221 1112233344455
Q ss_pred eeeCCCCcCCCcCChhhccCCCCceeecccccccCcCcccccCCCCcceeeccCccCcccCChhccCCCCCCEEeccCCc
Q 010041 225 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 304 (519)
Q Consensus 225 ~L~l~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 304 (519)
.+.+... ........+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...+..+.+|+.+.+..+
T Consensus 198 ~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred ccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 5554432 12233345566778888877544 33344456677888998888765 44444567788899999998654
Q ss_pred ccccCCCCCCCCCCCcEEeCcCCccccCCchhhcCCCCCCEEECcCCcCcccCCCCCCCCCCCcEEEccCccCccccchh
Q 010041 305 LTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNLLSGQIPFA 384 (519)
Q Consensus 305 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 384 (519)
+.......|..+++|+.+.+.++.+......+|.++.+|+.+.+..+ ++..-...|..|.+|+.+.+..+ ++..-..+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~a 351 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGA 351 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhH
Confidence 44445567889999999999988887666778999999999999765 56566678999999999988654 44333455
Q ss_pred hhccc
Q 010041 385 IGKLF 389 (519)
Q Consensus 385 ~~~~~ 389 (519)
|.++.
T Consensus 352 F~~c~ 356 (379)
T 4h09_A 352 FEGSS 356 (379)
T ss_dssp TTTSS
T ss_pred hhCCC
Confidence 55553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=3.6e-10 Score=109.81 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=42.9
Q ss_pred hcCCCCCCEEEcccCcCC---------ccCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccCCcCcccCch
Q 010041 121 IDSLSNLTYIYLYENNLT---------GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGTIPI 191 (519)
Q Consensus 121 l~~l~~L~~L~L~~n~~~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 191 (519)
..++++|+.|.+.+.... +.+...+..+|+|+.|+|++|.-. .++. +. +++|++|++..+.++.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 444566666666443221 123333455667777777665211 1222 22 56777777776666543333
Q ss_pred hcc--CCCCCCEEecc
Q 010041 192 EIE--SLRNLQWLDLS 205 (519)
Q Consensus 192 ~l~--~l~~L~~L~l~ 205 (519)
.+. .+|+|++|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 333 56777777764
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=3.4e-09 Score=102.97 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=94.9
Q ss_pred CChhccCCCCCCEEeccCCcccccCCCCCCCCCCCcEEeCcCCccccCCchhhc--CCCCCCEEECcC--CcCccc----
Q 010041 285 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG--NFSALSYLDLSD--NRICGI---- 356 (519)
Q Consensus 285 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~---- 356 (519)
+...+..+++|++|++++|.-. .++. + .+++|++|++..+.+.......+. .+++|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667788888888877311 2232 3 378889999888877654333343 688999988753 111111
Q ss_pred -CCCCC--CCCCCCcEEEccCccCccccchhhh---cccCCCEEEccCCccccc----cccccccCCCCCEEEccCCcce
Q 010041 357 -IPDEL--TKLSHLKYLNLSSNLLSGQIPFAIG---KLFNLASLDLSKNKLSGS----IPTEIGNCSELRNLTLNHNSLN 426 (519)
Q Consensus 357 -~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 426 (519)
+...+ ..+++|++|++.+|.+++..+..+. .++.|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11112 3478999999999988765444443 477899999999998874 3444566789999999999877
Q ss_pred eee
Q 010041 427 GKL 429 (519)
Q Consensus 427 ~~~ 429 (519)
...
T Consensus 321 d~~ 323 (362)
T 2ra8_A 321 DEM 323 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 155
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=98.82 E-value=2.3e-10 Score=108.81 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=58.1
Q ss_pred ceeeeecceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHH
Q 010041 425 LNGKLAHTMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFA 503 (519)
Q Consensus 425 l~~~~~~~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~ 503 (519)
+++++......+.++||||||++++|++| |+.|+.... ...+.+.+......+.+..+++++. +++..
T Consensus 214 mAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~--------~~~~~~~i~~~~~~~~p~~~~~~~~---~li~~ 282 (308)
T 4gt4_A 214 MAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--------NQDVVEMIRNRQVLPCPDDCPAWVY---ALMIE 282 (308)
T ss_dssp CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHH
T ss_pred cCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCcccchHHHH---HHHHH
Confidence 34444445567889999999999999998 899975321 1122233333333334444555555 88999
Q ss_pred hcCCCCCCCCCcccCC
Q 010041 504 CLSSQPKSRPTMQRIS 519 (519)
Q Consensus 504 C~~~~p~~RP~m~~v~ 519 (519)
||+.+|++||||+||+
T Consensus 283 C~~~dP~~RPs~~ei~ 298 (308)
T 4gt4_A 283 CWNEFPSRRPRFKDIH 298 (308)
T ss_dssp HTCSSGGGSCCHHHHH
T ss_pred HcCCChhHCcCHHHHH
Confidence 9999999999999873
No 156
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=98.74 E-value=9e-10 Score=105.68 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=56.9
Q ss_pred ceeeeecceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHH
Q 010041 425 LNGKLAHTMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFA 503 (519)
Q Consensus 425 l~~~~~~~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~ 503 (519)
+++++......+.++||||||++++|++| |+.|+.... ...+.+.+......+.+....+++. +++..
T Consensus 227 mAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~--------~~~~~~~i~~g~~~~~p~~~~~~~~---~li~~ 295 (329)
T 4aoj_A 227 MPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS--------NTEAIDCITQGRELERPRACPPEVY---AIMRG 295 (329)
T ss_dssp CCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC--------HHHHHHHHHHTCCCCCCTTCCHHHH---HHHHH
T ss_pred cChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC--------HHHHHHHHHcCCCCCCcccccHHHH---HHHHH
Confidence 34444445567889999999999999998 899976321 1112222322222333344445555 88999
Q ss_pred hcCCCCCCCCCcccCC
Q 010041 504 CLSSQPKSRPTMQRIS 519 (519)
Q Consensus 504 C~~~~p~~RP~m~~v~ 519 (519)
||+.+|++||||+||+
T Consensus 296 cl~~dP~~RPs~~ei~ 311 (329)
T 4aoj_A 296 CWQREPQQRHSIKDVH 311 (329)
T ss_dssp HCCSSTTTSCCHHHHH
T ss_pred HcCcChhHCcCHHHHH
Confidence 9999999999999873
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=1e-09 Score=101.11 Aligned_cols=79 Identities=28% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCCCCEEEccCCCCCc--cCCccccCCCCCCEEEccCCcCcccCchhccCCC--CCCEEeccCCcCCCCCCc-------
Q 010041 147 SLRNLEVLDLGSNNLNG--TIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLR--NLQWLDLSSNKLSGTIPK------- 215 (519)
Q Consensus 147 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~------- 215 (519)
++++|+.|+|++|.+++ .+|..+..+++|++|+|++|++.+. ..+..+. +|++|++++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45556666666666554 3334444556666666666665543 2222233 566666666666554442
Q ss_pred ccCCcCccCeee
Q 010041 216 EIGSLRNLKELD 227 (519)
Q Consensus 216 ~l~~l~~L~~L~ 227 (519)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666654
No 158
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=98.69 E-value=1.2e-09 Score=103.30 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=56.3
Q ss_pred ceeeeecceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHH
Q 010041 425 LNGKLAHTMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFA 503 (519)
Q Consensus 425 l~~~~~~~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~ 503 (519)
+++++......+.++||||||++++|++| |+.|+.... ...+...+......+.+....+++. +++..
T Consensus 197 mAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~--------~~~~~~~i~~~~~~~~p~~~~~~~~---~li~~ 265 (299)
T 4asz_A 197 MPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS--------NNEVIECITQGRVLQRPRTCPQEVY---ELMLG 265 (299)
T ss_dssp CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--------HHHHHHHHHHTCCCCCCTTCCHHHH---HHHHH
T ss_pred cCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--------HHHHHHHHHcCCCCCCCccchHHHH---HHHHH
Confidence 33444445567889999999999999998 899976321 1112222322222233344445555 88999
Q ss_pred hcCCCCCCCCCcccC
Q 010041 504 CLSSQPKSRPTMQRI 518 (519)
Q Consensus 504 C~~~~p~~RP~m~~v 518 (519)
||+.+|++||||+||
T Consensus 266 cl~~dP~~RPs~~~i 280 (299)
T 4asz_A 266 CWQREPHMRKNIKGI 280 (299)
T ss_dssp HTCSSGGGSCCHHHH
T ss_pred HcCCChhHCcCHHHH
Confidence 999999999999986
No 159
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=98.65 E-value=2.3e-09 Score=103.79 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=58.3
Q ss_pred ceeeeecceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHH
Q 010041 425 LNGKLAHTMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFA 503 (519)
Q Consensus 425 l~~~~~~~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~ 503 (519)
+++++......+.++||||||++++|++| |+.|+.... ....+...+......+.+....+++. +++..
T Consensus 254 mAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~-------~~~~~~~~i~~g~~~~~p~~~~~~~~---~li~~ 323 (353)
T 4ase_A 254 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-------IDEEFCRRLKEGTRMRAPDYTTPEMY---QTMLD 323 (353)
T ss_dssp CCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-------CSHHHHHHHHHTCCCCCCTTCCHHHH---HHHHH
T ss_pred cCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHHcCCCCCCCccCCHHHH---HHHHH
Confidence 34444445567889999999999999998 999986321 11223333433333333444445555 78899
Q ss_pred hcCCCCCCCCCcccCC
Q 010041 504 CLSSQPKSRPTMQRIS 519 (519)
Q Consensus 504 C~~~~p~~RP~m~~v~ 519 (519)
||+.+|++||||.||+
T Consensus 324 c~~~dP~~RPt~~eil 339 (353)
T 4ase_A 324 CWHGEPSQRPTFSELV 339 (353)
T ss_dssp HTCSSGGGSCCHHHHH
T ss_pred HcCcChhHCcCHHHHH
Confidence 9999999999999873
No 160
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=98.58 E-value=7.2e-09 Score=98.07 Aligned_cols=76 Identities=18% Similarity=0.393 Sum_probs=50.2
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC----CCChhHHHHHHHHHHHHHHhcCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP----PVNQKIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~la~~C~~~~p 509 (519)
..+.++||||||++++|++||+.|+..... ...+...+...... ..+....+++. +++..|++.+|
T Consensus 213 ~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-------~~~~~~~~~~~~~~p~~~~~~~~~~~~l~---~li~~cl~~dP 282 (307)
T 3omv_A 213 PFSFQSDVYSYGIVLYELMTGELPYSHINN-------RDQIIFMVGRGYASPDLSKLYKNCPKAMK---RLVADCVKKVK 282 (307)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-------HHHHHHHHHTTCCCCCSTTSCTTSCHHHH---HHHHHHTCSSS
T ss_pred CCCcHHHhHhHHHHHHHHHHCCCCCCCCCh-------HHHHHHHHhcCCCCCCcccccccchHHHH---HHHHHHcCCCH
Confidence 467899999999999999999999863211 11111122111111 11223334554 88999999999
Q ss_pred CCCCCcccCC
Q 010041 510 KSRPTMQRIS 519 (519)
Q Consensus 510 ~~RP~m~~v~ 519 (519)
++||||.||+
T Consensus 283 ~~RPs~~ei~ 292 (307)
T 3omv_A 283 EERPLFPQIL 292 (307)
T ss_dssp TTSCCHHHHH
T ss_pred hHCcCHHHHH
Confidence 9999999873
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=3.1e-08 Score=86.75 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCCEEEccCCcCccc----CchhccCCCCCCEEec--cCCcCCCC----CCcccCCcCccCeeeCCCCcCC
Q 010041 172 VRNLETLSLDGNKLSGT----IPIEIESLRNLQWLDL--SSNKLSGT----IPKEIGSLRNLKELDLSSNKLG 234 (519)
Q Consensus 172 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 234 (519)
.+.|++|+|++|.++.. +...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555554422 2233444455555555 44555432 1222333455666666666543
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=2.4e-08 Score=87.52 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCCCCcEEECCCC-ccccc----cchhhcCCCCCCEEEcccCcCCcc----CCccccCCCCCCEEEccCCCCCcc----
Q 010041 98 SCFPNLQYLDLGSN-NLSGS----IPSQIDSLSNLTYIYLYENNLTGT----IPKEIGSLRNLEVLDLGSNNLNGT---- 164 (519)
Q Consensus 98 ~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~---- 164 (519)
...+.|++|+|++| .+... +...+...+.|++|+|++|.+... +...+...+.|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34455555555555 54322 223344445555555555555421 222233344555555555555421
Q ss_pred CCccccCCCCCCEEEc--cCCcCccc----CchhccCCCCCCEEeccCCcC
Q 010041 165 IPIEIGSVRNLETLSL--DGNKLSGT----IPIEIESLRNLQWLDLSSNKL 209 (519)
Q Consensus 165 ~p~~l~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l 209 (519)
+...+...+.|++|+| ++|.++.. +...+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2233444445555555 44555432 222333345555555555544
No 163
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.45 E-value=3e-08 Score=94.17 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=52.8
Q ss_pred eccccccccchhhhhcccccCCCCcccccccc----cCCCCCcc---h-hhhhhhccCCCCChhH--HHHHHHHHHHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLS----SSSGPKIM---L-INVLDQRLSPPVNQKI--VQDIILVSTIAFA 503 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~----~~~~~~~~---~-~~~~d~~~~~~~~~~~--~~~~~~~~~la~~ 503 (519)
..+.++||||||++++|++||+.|........ ........ . ..+.+...++..+... .+....+.+++.+
T Consensus 194 ~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~ 273 (303)
T 3hmm_A 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRE 273 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHT
T ss_pred ccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHH
Confidence 45678999999999999999988764321110 00001111 1 1123344444433221 1233345589999
Q ss_pred hcCCCCCCCCCcccCC
Q 010041 504 CLSSQPKSRPTMQRIS 519 (519)
Q Consensus 504 C~~~~p~~RP~m~~v~ 519 (519)
||+.+|++||||.||+
T Consensus 274 cl~~dP~~RPt~~ei~ 289 (303)
T 3hmm_A 274 CWYANGAARLTALRIK 289 (303)
T ss_dssp TCCSSGGGSCCHHHHH
T ss_pred HcccCHhHCcCHHHHH
Confidence 9999999999999873
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=5.8e-07 Score=82.70 Aligned_cols=106 Identities=26% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCCCCCCcE--EECCCCcc---ccccchhhcCCCCCCEEEcccCcCCc--cCCccccCCCCCCEEEccCCCCCccCCccc
Q 010041 97 FSCFPNLQY--LDLGSNNL---SGSIPSQIDSLSNLTYIYLYENNLTG--TIPKEIGSLRNLEVLDLGSNNLNGTIPIEI 169 (519)
Q Consensus 97 ~~~l~~L~~--L~l~~n~~---~~~~~~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 169 (519)
+...+.|+. ++++.|.. .+.+.....++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444555665 67777743 22233334678999999999999997 5667778999999999999999865 234
Q ss_pred cCCC--CCCEEEccCCcCcccCc-------hhccCCCCCCEEec
Q 010041 170 GSVR--NLETLSLDGNKLSGTIP-------IEIESLRNLQWLDL 204 (519)
Q Consensus 170 ~~l~--~L~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~l 204 (519)
..+. +|++|+|++|.+.+.+| ..+..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4334 99999999999987665 23678999998864
No 165
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=98.07 E-value=4.3e-07 Score=87.25 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=54.0
Q ss_pred eeccccccccchhhhhcccccCCCCccccccc----------ccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHH
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSL----------SSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAF 502 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~ 502 (519)
...+.+.|+||+|++++|+++|+.|.+..... ..............+.......... ....+.+++.
T Consensus 210 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~ 286 (326)
T 3uim_A 210 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDE---EVEQLIQVAL 286 (326)
T ss_dssp SEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHH---HHHHHHHHHH
T ss_pred CCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHH---HHHHHHHHHH
Confidence 34567899999999999999999998532110 0011111122233333333333333 3344558999
Q ss_pred HhcCCCCCCCCCcccCC
Q 010041 503 ACLSSQPKSRPTMQRIS 519 (519)
Q Consensus 503 ~C~~~~p~~RP~m~~v~ 519 (519)
.|++.+|++||||.||+
T Consensus 287 ~cl~~dP~~Rps~~ell 303 (326)
T 3uim_A 287 LCTQSSPMERPKMSEVV 303 (326)
T ss_dssp HHTCSCGGGSCCHHHHH
T ss_pred HHhCcCCccCCCHHHHH
Confidence 99999999999999873
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.7e-06 Score=73.83 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=40.5
Q ss_pred CCEEECcCCcCcccCCCCCCCCCCCcEEEccCcc-Cccccchhhhc----ccCCCEEEccCCc-cccccccccccCCCCC
Q 010041 343 LSYLDLSDNRICGIIPDELTKLSHLKYLNLSSNL-LSGQIPFAIGK----LFNLASLDLSKNK-LSGSIPTEIGNCSELR 416 (519)
Q Consensus 343 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 416 (519)
|+.|+++++.+++..-..+..+++|++|+|++|. +++.--..+.. +++|++|++++|. +++..-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4444444444433322333444555555555553 44332223333 2356666666653 5554445555666666
Q ss_pred EEEccCCc
Q 010041 417 NLTLNHNS 424 (519)
Q Consensus 417 ~L~l~~n~ 424 (519)
.|++++|+
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 66666654
No 167
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=1.6e-06 Score=73.95 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCEEEcccCcCCccCCccccCCCCCCEEEccCCC-CCccCCccccCC----CCCCEEEccCCc-CcccCchhccCCCCC
Q 010041 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN-LNGTIPIEIGSV----RNLETLSLDGNK-LSGTIPIEIESLRNL 199 (519)
Q Consensus 126 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 199 (519)
+|++|+++++.++..--..+.++++|++|+|++|. ++...-..+..+ ++|++|+|++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666665554333344555556666665553 332222223332 245555555543 443222334445555
Q ss_pred CEEeccCC
Q 010041 200 QWLDLSSN 207 (519)
Q Consensus 200 ~~L~l~~n 207 (519)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 168
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=97.99 E-value=5.5e-07 Score=84.43 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=48.2
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC-CChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP-VNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.++|+||||++++|++||+.|...... ...+...+.....+. .+....+++. .+...|++.+|++|
T Consensus 205 ~y~~~~DiwSlGvilyelltg~~Pf~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~R 274 (290)
T 3fpq_A 205 KYDESVDVYAFGMCMLEMATSEYPYSECQN-------AAQIYRRVTSGVKPASFDKVAIPEVK---EIIEGCIRQNKDER 274 (290)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-------HHHHHHHHTTTCCCGGGGGCCCHHHH---HHHHHHSCSSGGGS
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-------HHHHHHHHHcCCCCCCCCccCCHHHH---HHHHHHccCChhHC
Confidence 457799999999999999999999752110 011111121111111 1111223444 78899999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
||++|+
T Consensus 275 ~s~~e~ 280 (290)
T 3fpq_A 275 YSIKDL 280 (290)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 169
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=97.99 E-value=6.7e-07 Score=86.03 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=51.5
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.|+||||++++|+++ |+.|..... .......+......+.+.....++. .++..|++.+|+
T Consensus 193 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~ 261 (327)
T 3poz_A 193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--------ASEISSILEKGERLPQPPICTIDVY---MIMVKCWMIDAD 261 (327)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--------GGGHHHHHHTTCCCCCCTTBCHHHH---HHHHHHTCSCGG
T ss_pred cCCCCchhhhhhhHHHHHHHHhcCCCCccCCC--------HHHHHHHHHcCCCCCCCccCCHHHH---HHHHHHcCCChh
Confidence 3456778999999999999999 999976321 1122233332222222233334444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+|.||
T Consensus 262 ~Rps~~el 269 (327)
T 3poz_A 262 SRPKFREL 269 (327)
T ss_dssp GSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999886
No 170
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=97.95 E-value=8e-07 Score=85.39 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=52.6
Q ss_pred eeeeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 426 NGKLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 426 ~~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
++++......+.++|+||+|++++|+++|+.|+.... .......++.... ++.+....+++. .+...|+
T Consensus 193 APE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-------~~~~~~~i~~~~~-~~~~~~~s~~~~---~li~~~L 261 (350)
T 4b9d_A 193 SPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-------MKNLVLKIISGSF-PPVSLHYSYDLR---SLVSQLF 261 (350)
T ss_dssp CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-------HHHHHHHHHHTCC-CCCCTTSCHHHH---HHHHHHT
T ss_pred CHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-------HHHHHHHHHcCCC-CCCCccCCHHHH---HHHHHHc
Confidence 3333334456779999999999999999999985211 0001112222221 122223334555 7889999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.|+
T Consensus 262 ~~dP~~R~s~~e~ 274 (350)
T 4b9d_A 262 KRNPRDRPSVNSI 274 (350)
T ss_dssp CSSGGGSCCHHHH
T ss_pred cCChhHCcCHHHH
Confidence 9999999999875
No 171
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=97.93 E-value=8.8e-07 Score=87.01 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=51.4
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.||||||++++|+++ |+.|..... .....+.+......+.+....+++. +++..|++.+|+
T Consensus 289 ~~~~~~~~DvwslG~il~el~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~cl~~dP~ 357 (377)
T 3cbl_A 289 YGRYSSESDVWSFGILLWETFSLGASPYPNLS--------NQQTREFVEKGGRLPCPELCPDAVF---RLMEQCWAYEPG 357 (377)
T ss_dssp HCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGG
T ss_pred cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCCCch
Confidence 3456779999999999999998 999976321 1112222322222222333334544 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||||.||
T Consensus 358 ~Rps~~~i 365 (377)
T 3cbl_A 358 QRPSFSTI 365 (377)
T ss_dssp GSCCHHHH
T ss_pred hCcCHHHH
Confidence 99999986
No 172
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=97.92 E-value=1.2e-06 Score=83.70 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=51.1
Q ss_pred eeeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccC-CCCChhHHHHHHHHHHHHHHhc
Q 010041 427 GKLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLS-PPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 427 ~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~la~~C~ 505 (519)
+++......+.++|+||+|++++|+++|+.|+.... .......+...... ...++...+++. .+...|+
T Consensus 225 PE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~~~s~~~~---~li~~~L 294 (336)
T 4g3f_A 225 PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF-------RGPLCLKIASEPPPIREIPPSCAPLTA---QAIQEGL 294 (336)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC-------CSCCHHHHHHSCCGGGGSCTTSCHHHH---HHHHHHT
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC-------HHHHHHHHHcCCCCchhcCccCCHHHH---HHHHHHc
Confidence 333334456779999999999999999999975311 11111112111100 011222334444 7789999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.|+
T Consensus 295 ~~dP~~R~sa~el 307 (336)
T 4g3f_A 295 RKEPVHRASAMEL 307 (336)
T ss_dssp CSSGGGSCCHHHH
T ss_pred cCCHhHCcCHHHH
Confidence 9999999999875
No 173
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.89 E-value=7.8e-07 Score=85.28 Aligned_cols=83 Identities=29% Similarity=0.391 Sum_probs=51.8
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccC--------CCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHh
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSS--------SGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFAC 504 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C 504 (519)
...+.+.|+||||++++|+++|+.|.......... ..........+++...........+ .+..++..|
T Consensus 216 ~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~ 292 (321)
T 2qkw_B 216 GRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLR---KFGDTAVKC 292 (321)
T ss_dssp CBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHH---HHHHHHHHH
T ss_pred CCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHH---HHHHHHHHH
Confidence 34567899999999999999999997532110000 0000011122333333333333333 445889999
Q ss_pred cCCCCCCCCCcccC
Q 010041 505 LSSQPKSRPTMQRI 518 (519)
Q Consensus 505 ~~~~p~~RP~m~~v 518 (519)
++.+|++||||.||
T Consensus 293 l~~dP~~Rps~~el 306 (321)
T 2qkw_B 293 LALSSEDRPSMGDV 306 (321)
T ss_dssp TCSSGGGSCCHHHH
T ss_pred cCCCcccCcCHHHH
Confidence 99999999999986
No 174
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=97.89 E-value=1.2e-06 Score=88.44 Aligned_cols=75 Identities=31% Similarity=0.534 Sum_probs=51.0
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.++||||||++++|+++ |+.|..... .......+......+.+....+++. .++..|++.+|++
T Consensus 360 ~~~~~~~DvwslG~~l~el~t~g~~P~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~l~---~li~~cl~~dp~~ 428 (454)
T 1qcf_A 360 GSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--------NPEVIRALERGYRMPRPENCPEELY---NIMMRCWKNRPEE 428 (454)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHHTCCCCCCTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHccCChhH
Confidence 456779999999999999999 999975321 1112222222222222333344554 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||||.+|
T Consensus 429 RPt~~~i 435 (454)
T 1qcf_A 429 RPTFEYI 435 (454)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 175
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=97.85 E-value=9.1e-07 Score=86.73 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=50.1
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.|+||||++++|+++ |+.|..... .....+.+......+.+....+++. +++..|++.+|+
T Consensus 224 ~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~l~---~li~~cl~~dp~ 292 (373)
T 2qol_A 224 YRKFTSASDVWSYGIVLWEVMSYGERPYWEMS--------NQDVIKAVDEGYRLPPPMDCPAALY---QLMLDCWQKDRN 292 (373)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC--------HHHHHHHHHTTEECCCCTTCBHHHH---HHHHHHTCSSGG
T ss_pred cCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCccccHHHH---HHHHHHhCcChh
Confidence 3456678999999999999997 999975321 1112222332222222222334444 889999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+||+|.||+
T Consensus 293 ~RPs~~~i~ 301 (373)
T 2qol_A 293 NRPKFEQIV 301 (373)
T ss_dssp GSCCHHHHH
T ss_pred hCcCHHHHH
Confidence 999999863
No 176
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=97.83 E-value=2.3e-06 Score=86.18 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=51.6
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.||||||++++|+++ |+.|+.... .......+......+.+....+++. ++...|++.+|+
T Consensus 360 ~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--------~~~~~~~i~~~~~~~~p~~~~~~l~---~li~~cl~~dp~ 428 (450)
T 1k9a_A 360 EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--------LKDVVPRVEKGYKMDAPDGCPPAVY---DVMKNCWHLDAA 428 (450)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--------TTTHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGG
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCcCCHHHH---HHHHHHcCCChh
Confidence 3456779999999999999998 999986321 1112222222222222333344555 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||||.||
T Consensus 429 ~Rpt~~~l 436 (450)
T 1k9a_A 429 TRPTFLQL 436 (450)
T ss_dssp GSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 177
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=97.82 E-value=2.4e-06 Score=89.39 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=52.4
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.||||||++++|+++ |+.|+.... .....+.+......+.+....+++. +++..|++.+|+
T Consensus 513 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--------~~~~~~~i~~~~~~~~p~~~~~~l~---~li~~cl~~dP~ 581 (613)
T 2ozo_A 513 FRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--------GPEVMAFIEQGKRMECPPECPPELY---ALMSDCWIYKWE 581 (613)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--------SHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHTTCSSTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCcCCHHHH---HHHHHHcCCChh
Confidence 3456779999999999999998 999976321 1122233333222223333345555 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+|.||
T Consensus 582 ~RPs~~~l 589 (613)
T 2ozo_A 582 DRPDFLTV 589 (613)
T ss_dssp TSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999986
No 178
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=97.81 E-value=1.6e-06 Score=83.27 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=50.2
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .......+......+.+....+++. ++...|++.+|++
T Consensus 229 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 297 (325)
T 3kul_A 229 RTFSSASDVWSFGVVMWEVLAYGERPYWNMT--------NRDVISSVEEGYRLPAPMGCPHALH---QLMLDCWHKDRAQ 297 (325)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCTTTTSC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcccCC--------HHHHHHHHHcCCCCCCCCCcCHHHH---HHHHHHccCChhh
Confidence 445678999999999999998 999975321 1111122222222222233334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||+|.||
T Consensus 298 Rps~~ei 304 (325)
T 3kul_A 298 RPRFSQI 304 (325)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 179
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=97.81 E-value=2.6e-06 Score=86.80 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=51.8
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.++||||||++++|+++ |+.|..... .....+.+......+.+....+++. +++..|++.+|+
T Consensus 393 ~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~cl~~dP~ 461 (495)
T 1opk_A 393 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--------LSQVYELLEKDYRMERPEGCPEKVY---ELMRACWQWNPS 461 (495)
T ss_dssp HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--------GGGHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGG
T ss_pred cCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCcChh
Confidence 3456779999999999999999 998875321 1112233333333222333344554 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||||.||
T Consensus 462 ~RPs~~el 469 (495)
T 1opk_A 462 DRPSFAEI 469 (495)
T ss_dssp GSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999986
No 180
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=97.79 E-value=3.5e-06 Score=80.79 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=51.8
Q ss_pred eeeeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHH
Q 010041 426 NGKLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFA 503 (519)
Q Consensus 426 ~~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~ 503 (519)
++++......+.++|+||+|++++|+++|+.|+.... .......+.....+. ......+++. .+...
T Consensus 238 APEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--------~~~~~~~i~~~~~~~~~~~~~~s~~~~---dli~~ 306 (346)
T 4fih_A 238 APELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--------PLKAMKMIRDNLPPRLKNLHKVSPSLK---GFLDR 306 (346)
T ss_dssp CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--------HHHHHHHHHHSSCCCCSCGGGSCHHHH---HHHHH
T ss_pred CHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--------HHHHHHHHHcCCCCCCCccccCCHHHH---HHHHH
Confidence 3333334456789999999999999999999975211 111111121111111 1122234444 78899
Q ss_pred hcCCCCCCCCCcccC
Q 010041 504 CLSSQPKSRPTMQRI 518 (519)
Q Consensus 504 C~~~~p~~RP~m~~v 518 (519)
|++.||++|||+.|+
T Consensus 307 ~L~~dP~~R~ta~e~ 321 (346)
T 4fih_A 307 LLVRDPAQRATAAEL 321 (346)
T ss_dssp HSCSSTTTSCCHHHH
T ss_pred HcCCChhHCcCHHHH
Confidence 999999999999886
No 181
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=97.78 E-value=5.6e-06 Score=81.05 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=49.6
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.++|+||||++++|+++|+.|...........................+......+++. .+...|++.+|++|
T Consensus 268 ~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~R 344 (371)
T 3q60_A 268 ATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVK---TLIGRFLNFDRRRR 344 (371)
T ss_dssp EECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHH---HHHHHHTCSSTTTC
T ss_pred CCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHH---HHHHHHcCCChhhC
Confidence 345679999999999999999999986432110000000000000011111111112234444 78999999999999
Q ss_pred CCcccCC
Q 010041 513 PTMQRIS 519 (519)
Q Consensus 513 P~m~~v~ 519 (519)
||+.|++
T Consensus 345 pt~~e~l 351 (371)
T 3q60_A 345 LLPLEAM 351 (371)
T ss_dssp CCHHHHT
T ss_pred CCHHHHh
Confidence 9998864
No 182
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=97.78 E-value=2.1e-06 Score=81.77 Aligned_cols=77 Identities=27% Similarity=0.604 Sum_probs=49.5
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||||++++|+++|+.|...... ........+.....++......+++. ++...|++.+|++|
T Consensus 178 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 248 (307)
T 2eva_A 178 SNYSEKCDVFSWGIILWEVITRRKPFDEIGG------PAFRIMWAVHNGTRPPLIKNLPKPIE---SLMTRCWSKDPSQR 248 (307)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS------SHHHHHHHHHTTCCCCCBTTCCHHHH---HHHHHHTCSSGGGS
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCchhhCc------cHHHHHHHHhcCCCCCcccccCHHHH---HHHHHHhcCChhhC
Confidence 3456789999999999999999999763211 01111111111112222222334444 78999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|||.||
T Consensus 249 ps~~el 254 (307)
T 2eva_A 249 PSMEEI 254 (307)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 183
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=97.78 E-value=2.7e-06 Score=83.23 Aligned_cols=77 Identities=25% Similarity=0.407 Sum_probs=50.8
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.|+||||++++|+++ |+.|..... .......+........+....+++. .+...|++.+|+
T Consensus 279 ~~~~~~~~DvwslG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~ 347 (370)
T 2psq_A 279 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--------VEELFKLLKEGHRMDKPANCTNELY---MMMRDCWHAVPS 347 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------GGGHHHHHHTTCCCCCCTTSCHHHH---HHHHHHTCSSGG
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC--------HHHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHcCCChh
Confidence 3445678999999999999999 999875321 1112222222222222223334444 789999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+||++.|++
T Consensus 348 ~Rpt~~ell 356 (370)
T 2psq_A 348 QRPTFKQLV 356 (370)
T ss_dssp GSCCHHHHH
T ss_pred hCcCHHHHH
Confidence 999999863
No 184
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=97.77 E-value=2.4e-06 Score=86.11 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=50.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.++||||||++++|+++ |+.|...... ....+.+......+.+....+++. .++..|++.+|++
T Consensus 356 ~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~cl~~dP~~ 424 (452)
T 1fmk_A 356 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--------REVLDQVERGYRMPCPPECPESLH---DLMCQCWRKEPEE 424 (452)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--------HHHHHHHHTTCCCCCCTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--------HHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHccCChhh
Confidence 456778999999999999999 9999753211 111122222222222333344444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||||.+|
T Consensus 425 Rpt~~~l 431 (452)
T 1fmk_A 425 RPTFEYL 431 (452)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 185
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=97.77 E-value=2.6e-06 Score=81.87 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=50.8
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|..... .......+......+.+.....++. .+...|++.+|++
T Consensus 194 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 262 (327)
T 3lzb_A 194 RIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--------ASEISSILEKGERLPQPPICTIDVY---MIMRKCWMIDADS 262 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--------GGGHHHHHHTTCCCCCCTTBCHHHH---HHHHHHTCSSGGG
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCCCCCCCC--------HHHHHHHHHcCCCCCCCccCCHHHH---HHHHHHcCCChhH
Confidence 345678999999999999999 999976321 1122233332222222233334444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 263 Rps~~el 269 (327)
T 3lzb_A 263 RPKFREL 269 (327)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 186
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=97.76 E-value=7.5e-06 Score=77.48 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=46.1
Q ss_pred ccccccccchhhhhcccccCCCCccccccc----c----cCCCCCcchhhhhhhccCCCCChhH--HHHHHHHHHHHHHh
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSL----S----SSSGPKIMLINVLDQRLSPPVNQKI--VQDIILVSTIAFAC 504 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~----~----~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~la~~C 504 (519)
.+.+.|+||||++++|+++|+.|....... . ..................+..+... .+....+.+++.+|
T Consensus 195 ~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c 274 (303)
T 3gxj_A 195 SFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMREC 274 (303)
T ss_dssp HHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTT
T ss_pred cCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCCccHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHH
Confidence 446899999999999999995544321100 0 0000111111222333333322211 12233455899999
Q ss_pred cCCCCCCCCCcccC
Q 010041 505 LSSQPKSRPTMQRI 518 (519)
Q Consensus 505 ~~~~p~~RP~m~~v 518 (519)
++.+|++|||+.||
T Consensus 275 l~~dP~~Rps~~~i 288 (303)
T 3gxj_A 275 WYANGAARLTALRI 288 (303)
T ss_dssp CCSSGGGSCCHHHH
T ss_pred hccCcccCCCHHHH
Confidence 99999999999986
No 187
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=97.76 E-value=3.5e-06 Score=79.43 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=49.8
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ......+........+....+++. .+...|++.+|++
T Consensus 195 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 263 (291)
T 1xbb_A 195 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--------SEVTAMLEKGERMGCPAGCPREMY---DLMNLCWTYDVEN 263 (291)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSTTT
T ss_pred CCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH--------HHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCCChhh
Confidence 345678999999999999999 9999753211 111122222222222222334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 264 Rps~~~l 270 (291)
T 1xbb_A 264 RPGFAAV 270 (291)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 188
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=97.74 E-value=2.5e-06 Score=79.31 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=47.3
Q ss_pred ccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010041 437 EKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQ 516 (519)
Q Consensus 437 ~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~ 516 (519)
.+.|+||||++++|+++|+.|....... ............+..+....+++. ++...|++.+|++|||+.
T Consensus 190 ~~~Di~slG~il~el~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~Rps~~ 259 (271)
T 3kmu_A 190 RSADMWSFAVLLWELVTREVPFADLSNM-------EIGMKVALEGLRPTIPPGISPHVS---KLMKICMNEDPAKRPKFD 259 (271)
T ss_dssp HHHHHHHHHHHHHHHHHCSCTTTTSCHH-------HHHHHHHHSCCCCCCCTTCCHHHH---HHHHHHTCSSGGGSCCHH
T ss_pred chhhHHHHHHHHHHHHhCCCCccccChH-------HHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHcCCChhhCcCHH
Confidence 3799999999999999999997532110 011112222222222223334444 788999999999999998
Q ss_pred cC
Q 010041 517 RI 518 (519)
Q Consensus 517 ~v 518 (519)
||
T Consensus 260 ~i 261 (271)
T 3kmu_A 260 MI 261 (271)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 189
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=97.73 E-value=3.2e-06 Score=82.32 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=50.5
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.|+||||++++|+++ |+.|..... ........+........+....+++. ++...|++.+|+
T Consensus 269 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~ 338 (359)
T 3vhe_A 269 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-------IDEEFCRRLKEGTRMRAPDYTTPEMY---QTMLDCWHGEPS 338 (359)
T ss_dssp HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-------CSHHHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGG
T ss_pred CCCCCchhhhhhHHHHHHHHHhcCCCCCCccc-------hhHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHccCChh
Confidence 3445678999999999999998 999975311 11112222222222222222334444 788999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||||.||
T Consensus 339 ~Rps~~el 346 (359)
T 3vhe_A 339 QRPTFSEL 346 (359)
T ss_dssp GSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999986
No 190
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=97.73 E-value=3.2e-06 Score=79.20 Aligned_cols=75 Identities=27% Similarity=0.378 Sum_probs=49.1
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ....+.+......+.+....+++. .+...|++.+|++
T Consensus 189 ~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 257 (281)
T 3cc6_A 189 RRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--------KDVIGVLEKGDRLPKPDLCPPVLY---TLMTRCWDYDPSD 257 (281)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--------GGHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhccHHHHHHHHHHHhCCCCCcccCCh--------HHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHccCCchh
Confidence 345678999999999999998 9999753211 111122221111122222234444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 258 Rps~~el 264 (281)
T 3cc6_A 258 RPRFTEL 264 (281)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 191
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=97.72 E-value=2.3e-06 Score=79.63 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=48.9
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|....... .............+.+....+++. ++...|++.+|++||
T Consensus 190 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~Rp 259 (271)
T 3dtc_A 190 MFSKGSDVWSYGVLLWELLTGEVPFRGIDGL-------AVAYGVAMNKLALPIPSTCPEPFA---KLMEDCWNPDPHSRP 259 (271)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH-------HHHHHHHTSCCCCCCCTTCCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHhhhcCCCCCCCCcccCHHHH---HHHHHHhcCCcccCc
Confidence 4567899999999999999999997532110 001111111222222222334444 889999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
|+.||
T Consensus 260 s~~e~ 264 (271)
T 3dtc_A 260 SFTNI 264 (271)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99986
No 192
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=97.72 E-value=4.4e-06 Score=80.85 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=49.1
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.++|+||||++++|+++|+.|....... .......+++......+....+++. .+...|++.+|++|
T Consensus 195 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~L~~dp~~R 265 (343)
T 3dbq_A 195 SKISPKSDVWSLGCILYYMTYGKTPFQQIINQ------ISKLHAIIDPNHEIEFPDIPEKDLQ---DVLKCCLKRDPKQR 265 (343)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH------HHHHHHHHCTTSCCCCCCCSCHHHH---HHHHHHTCSSTTTS
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCcchhhhhH------HHHHHHHhcCCcccCCcccCCHHHH---HHHHHHcCCChhHC
Confidence 34567899999999999999999997532100 0111222232222222222223444 78999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|||.||
T Consensus 266 pt~~e~ 271 (343)
T 3dbq_A 266 ISIPEL 271 (343)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 999886
No 193
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=97.72 E-value=4e-06 Score=78.83 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=50.2
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|..... .......+........+....+++. ++...|++.+|++
T Consensus 188 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 256 (287)
T 1u59_A 188 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--------GPEVMAFIEQGKRMECPPECPPELY---ALMSDCWIYKWED 256 (287)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--------THHHHHHHHTTCCCCCCTTCCHHHH---HHHHHTTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCcccCC--------HHHHHHHHhcCCcCCCCCCcCHHHH---HHHHHHcCCChhh
Confidence 345678999999999999998 999975321 1111222222222222233334554 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 257 Rps~~~l 263 (287)
T 1u59_A 257 RPDFLTV 263 (287)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 194
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=97.71 E-value=3.9e-06 Score=80.85 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=49.1
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ......+......+.+....+++. ++...|++.+|++
T Consensus 225 ~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 293 (333)
T 1mqb_A 225 RKFTSASDVWSFGIVMWEVMTYGERPYWELSN--------HEVMKAINDGFRLPTPMDCPSAIY---QLMMQCWQQERAR 293 (333)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--------HHHHHHHHTTCCCCCCTTCBHHHH---HHHHHHTCSSTTT
T ss_pred CCCCchhhhHHHHHHHHHHHcCCCCCcccCCH--------HHHHHHHHCCCcCCCcccCCHHHH---HHHHHHcCCChhh
Confidence 345678999999999999998 9999753211 111122222212222222334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||+|.||
T Consensus 294 Rps~~~l 300 (333)
T 1mqb_A 294 RPKFADI 300 (333)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 195
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=97.71 E-value=2.8e-06 Score=83.10 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=49.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .....+.+........+....+++. .+...|++.+|++
T Consensus 261 ~~~~~~~DvwslG~il~ellt~g~~pf~~~~--------~~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~ 329 (367)
T 3l9p_A 261 GIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--------NQEVLEFVTSGGRMDPPKNCPGPVY---RIMTQCWQHQPED 329 (367)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCccCCHHHH---HHHHHHcCCCHhH
Confidence 345678999999999999998 999875321 1111222222222222222334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 330 Rps~~ei 336 (367)
T 3l9p_A 330 RPNFAII 336 (367)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 196
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=97.70 E-value=2.8e-06 Score=79.51 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=48.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|...... ....+.+........+....+++. ++...|++.+|++||
T Consensus 192 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~Rp 260 (279)
T 2w5a_A 192 SYNEKSDIWSLGCLLYELCALMPPFTAFSQ--------KELAGKIREGKFRRIPYRYSDELN---EIITRMLNLKDYHRP 260 (279)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCCTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCcccCH--------HHHHHHHhhcccccCCcccCHHHH---HHHHHHcCCCcccCC
Confidence 456789999999999999999999753211 111111111111122222234444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.||+
T Consensus 261 s~~~ll 266 (279)
T 2w5a_A 261 SVEEIL 266 (279)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999863
No 197
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=97.69 E-value=3.5e-06 Score=79.22 Aligned_cols=76 Identities=30% Similarity=0.461 Sum_probs=50.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcc-hhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIM-LINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||+|++++|+++|+.|..... ..... .............+....+++. ++...|++.+|++|
T Consensus 204 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 274 (287)
T 4f0f_A 204 SYTEKADTYSFAMILYTILTGEGPFDEYS------YGKIKFINMIREEGLRPTIPEDCPPRLR---NVIELCWSGDPKKR 274 (287)
T ss_dssp EECHHHHHHHHHHHHHHHHHSSCTTTTCC------CCHHHHHHHHHHSCCCCCCCTTSCHHHH---HHHHHHTCSSGGGS
T ss_pred CcCchhhHHHHHHHHHHHHcCCCCCcccc------ccHHHHHHHHhccCCCCCCCcccCHHHH---HHHHHHhcCChhhC
Confidence 34678999999999999999999975321 11111 1111222222223333334444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
||+.||
T Consensus 275 ps~~~l 280 (287)
T 4f0f_A 275 PHFSYI 280 (287)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 198
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=97.69 E-value=5.1e-06 Score=81.90 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=49.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.++|+||||++++|+++|+.|...... ....+...+++......+....+++. .+...|++.+|++||
T Consensus 243 ~~~~~~DiwSlGvil~ell~G~~Pf~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~Rp 313 (390)
T 2zmd_A 243 KISPKSDVWSLGCILYYMTYGKTPFQQIIN------QISKLHAIIDPNHEIEFPDIPEKDLQ---DVLKCCLKRDPKQRI 313 (390)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCTTTTCCC------HHHHHHHHHCTTSCCCCCCCSCHHHH---HHHHHHTCSSTTTSC
T ss_pred CCCChhhHHHHHHHHHHHHHCCCcchhhhH------HHHHHHHHhCccccCCCCccchHHHH---HHHHHHcccChhhCC
Confidence 456789999999999999999999853210 00112223332222222222223444 789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 314 s~~el 318 (390)
T 2zmd_A 314 SIPEL 318 (390)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 199
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=97.69 E-value=5.1e-06 Score=79.16 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=50.2
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|..... .....+.+........+....+++. .+...|++.+|++
T Consensus 227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~ 295 (314)
T 2ivs_A 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP--------PERLFNLLKTGHRMERPDNCSEEMY---RLMLQCWKQEPDK 295 (314)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--------GGGHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCcCchhhHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHhhcCCcCCCCccCCHHHH---HHHHHHccCChhh
Confidence 345678999999999999999 999975321 1112222222222222223334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 296 Rps~~~l 302 (314)
T 2ivs_A 296 RPVFADI 302 (314)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 200
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=97.68 E-value=4.4e-06 Score=78.14 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=48.6
Q ss_pred eccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||+|++++|+++ |+.|...... ......+........+....+++. ++...|++.+|++|
T Consensus 190 ~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~R 258 (278)
T 1byg_A 190 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--------KDVVPRVEKGYKMDAPDGCPPAVY---EVMKNCWHLDAAMR 258 (278)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG--------GGHHHHHTTTCCCCCCTTCCHHHH---HHHHHHTCSSGGGS
T ss_pred CCCchhcHHHHHHHHHHHHhCCCCCCCCCCH--------HHHHHHHhcCCCCCCcccCCHHHH---HHHHHHhcCChhhC
Confidence 45678999999999999998 9998753211 111111222211222222334444 78899999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|++.|+
T Consensus 259 ps~~~l 264 (278)
T 1byg_A 259 PSFLQL 264 (278)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 999886
No 201
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=97.67 E-value=4.4e-06 Score=80.40 Aligned_cols=76 Identities=26% Similarity=0.407 Sum_probs=49.7
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... ........+........+....+++. .+...|++.+|++
T Consensus 241 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 310 (333)
T 2i1m_A 241 CVYTVQSDVWSYGILLWEIFSLGLNPYPGIL-------VNSKFYKLVKDGYQMAQPAFAPKNIY---SIMQACWALEPTH 310 (333)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-------SSHHHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCcccc-------hhHHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHhccChhh
Confidence 345678999999999999998 888875321 11112222222222222222234444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 311 Rps~~~l 317 (333)
T 2i1m_A 311 RPTFQQI 317 (333)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 202
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=97.67 E-value=5.6e-06 Score=86.89 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=52.1
Q ss_pred ceeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
....+.+.||||||++++|+++ |+.|+.... .....+.+........+....+++. .++..|++.+|+
T Consensus 546 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--------~~~~~~~i~~~~~~~~p~~~~~~l~---~li~~cl~~dP~ 614 (635)
T 4fl3_A 546 YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--------GSEVTAMLEKGERMGCPAGCPREMY---DLMNLCWTYDVE 614 (635)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCCCHh
Confidence 3456779999999999999998 999985321 1112223333322223333445555 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+|.+|
T Consensus 615 ~RPs~~~l 622 (635)
T 4fl3_A 615 NRPGFAAV 622 (635)
T ss_dssp TSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 203
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=97.67 E-value=2.9e-06 Score=81.44 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=48.4
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .....+.+........+.....++. .++..|++.+|++
T Consensus 192 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~ 260 (325)
T 3kex_A 192 GKYTHQSDVWSYGVTVWELMTFGAEPYAGLR--------LAEVPDLLEKGERLAQPQICTIDVY---MVMVKCWMIDENI 260 (325)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--------TTHHHHHHHTTCBCCCCTTBCTTTT---HHHHHHTCSCTTT
T ss_pred CCCChhhHhHHhHHHHHHHHhCCCCCccccC--------HHHHHHHHHcCCCCCCCCcCcHHHH---HHHHHHcCCChhh
Confidence 345678999999999999999 999976321 1111122221111111111222333 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||+|.||
T Consensus 261 Rps~~el 267 (325)
T 3kex_A 261 RPTFKEL 267 (325)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 204
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=97.67 E-value=5.7e-06 Score=77.49 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=48.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ......+......+.+....+++. .+...|++.+|++
T Consensus 192 ~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 260 (281)
T 1mp8_A 192 RRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--------NDVIGRIENGERLPMPPNCPPTLY---SLMTKCWAYDPSR 260 (281)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--------GGHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCCccCchHHHHHHHHHHhcCCCCCCcCCH--------HHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHccCChhh
Confidence 345678999999999999996 8888753211 111111211111122223334444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 261 Rps~~~l 267 (281)
T 1mp8_A 261 RPRFTEL 267 (281)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 205
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=97.67 E-value=3e-06 Score=79.97 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=48.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC---ChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV---NQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||||++++|+++|+.|....... ................+. .....+++ .++...|++.+|+
T Consensus 191 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~li~~~l~~dp~ 263 (296)
T 3uzp_A 191 EQSRRDDLESLGYVLMYFNLGSLPWQGLKAA----TKRQKYERISEKKMSTPIEVLCKGYPSEF---ATYLNFCRSLRFD 263 (296)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS----SSSSHHHHHHHHHHHSCHHHHTTTSCHHH---HHHHHHHHTSCTT
T ss_pred CCCcchhhHHHHHHHHHHHhCCCCCCCcCch----hhhhhhhhhcccccCCchHHHHhhCCHHH---HHHHHHHHhcCcC
Confidence 4567899999999999999999998642211 011111111111111110 01112333 4889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.||
T Consensus 264 ~Rps~~~l 271 (296)
T 3uzp_A 264 DKPDYSYL 271 (296)
T ss_dssp CCCCHHHH
T ss_pred cCCCHHHH
Confidence 99999886
No 206
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=97.66 E-value=5.9e-06 Score=79.89 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=50.6
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... ........+........+....+++. .+...|++.+|++
T Consensus 249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 318 (344)
T 1rjb_A 249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIP-------VDANFYKLIQNGFKMDQPFYATEEIY---IIMQSCWAFDSRK 318 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-------CSHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCChhHhHHHHHHHHHHHHcCCCCCcccCC-------cHHHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHcCCCchh
Confidence 345678999999999999998 999975321 11112222222222222222334444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 319 Rps~~~l 325 (344)
T 1rjb_A 319 RPSFPNL 325 (344)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 207
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=97.66 E-value=4.4e-06 Score=79.56 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=47.9
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... ...............+.....++. .+...|++.+|++||
T Consensus 215 ~~~~~~DiwslG~il~elltg~~Pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~Rp 284 (309)
T 3p86_A 215 PSNEKSDVYSFGVILWELATLQQPWGNLNPA-------QVVAAVGFKCKRLEIPRNLNPQVA---AIIEGCWTNEPWKRP 284 (309)
T ss_dssp CCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH-------HHHHHHHHSCCCCCCCTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHhcCCCCCCCccCCHHHH---HHHHHHccCChhhCc
Confidence 4567899999999999999999997532110 000111001111112222234444 889999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
|+.||
T Consensus 285 s~~~l 289 (309)
T 3p86_A 285 SFATI 289 (309)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 208
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=97.65 E-value=5.2e-06 Score=81.26 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=47.0
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .......+........+....+++. ++...|++.+|++
T Consensus 271 ~~~~~~~DvwSlG~il~ellt~~~~p~~~~~--------~~~~~~~~~~~~~~~~p~~~~~~l~---~li~~cl~~dp~~ 339 (373)
T 3c1x_A 271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--------TFDITVYLLQGRRLLQPEYCPDPLY---EVMLKCWHPKAEM 339 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--------SSCHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC--------HHHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCCChhh
Confidence 445678999999999999999 555654211 1111111111111111222234444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 340 RPs~~el 346 (373)
T 3c1x_A 340 RPSFSEL 346 (373)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 209
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=97.65 E-value=3.8e-06 Score=82.64 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=49.9
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .....+.+........+....+++. ++...|++.+|++
T Consensus 268 ~~~~~~~DiwslG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~ 336 (382)
T 3tt0_A 268 RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--------VEELFKLLKEGHRMDKPSNCTNELY---MMMRDCWHAVPSQ 336 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHTTCCCCCCSSCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhHHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCccCCHHHH---HHHHHHcCCChhh
Confidence 345678999999999999999 999875321 1111222222222222222334444 8899999999999
Q ss_pred CCCcccCC
Q 010041 512 RPTMQRIS 519 (519)
Q Consensus 512 RP~m~~v~ 519 (519)
||+|.||+
T Consensus 337 Rps~~ell 344 (382)
T 3tt0_A 337 RPTFKQLV 344 (382)
T ss_dssp SCCHHHHH
T ss_pred CcCHHHHH
Confidence 99999863
No 210
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=97.65 E-value=2.1e-06 Score=81.07 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=50.8
Q ss_pred eeccccccccchhhhhcccccCCCCcccccc-----cccCCCCCc---chhhhhhhccCCCCChhHHHHHHHHHHHHHHh
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSS-----LSSSSGPKI---MLINVLDQRLSPPVNQKIVQDIILVSTIAFAC 504 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~-----~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C 504 (519)
...+.+.|+||||++++|+++|+.|...... ......... ...+.+......+.+....+++. ++...|
T Consensus 192 ~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~ 268 (295)
T 3ugc_A 192 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIY---MIMTEC 268 (295)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHH---HHHHHH
Confidence 3456789999999999999999998753211 000000000 11122222222222333344554 889999
Q ss_pred cCCCCCCCCCcccC
Q 010041 505 LSSQPKSRPTMQRI 518 (519)
Q Consensus 505 ~~~~p~~RP~m~~v 518 (519)
++.+|++|||+.||
T Consensus 269 l~~dp~~Rps~~el 282 (295)
T 3ugc_A 269 WNNNVNQRPSFRDL 282 (295)
T ss_dssp SCSSGGGSCCHHHH
T ss_pred cCCChhhCCCHHHH
Confidence 99999999999986
No 211
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=97.63 E-value=5.4e-06 Score=85.35 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=50.3
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.||||||++++|+++ |+.|+..... ....+.+......+.+....+++. ++...|++.+|++
T Consensus 439 ~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~cl~~dP~~ 507 (535)
T 2h8h_A 439 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--------REVLDQVERGYRMPCPPECPESLH---DLMCQCWRKEPEE 507 (535)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--------HHHHHHHHcCCCCCCCCCCCHHHH---HHHHHHcCCChhH
Confidence 456778999999999999999 8998753211 111122222222222233334444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||||.||
T Consensus 508 RPt~~~l 514 (535)
T 2h8h_A 508 RPTFEYL 514 (535)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 212
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=97.63 E-value=5.7e-06 Score=76.86 Aligned_cols=75 Identities=24% Similarity=0.466 Sum_probs=48.1
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ......+........+....+++. ++...|++.+|++
T Consensus 180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 248 (268)
T 3sxs_A 180 FKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN--------SEVVLKVSQGHRLYRPHLASDTIY---QIMYSCWHELPEK 248 (268)
T ss_dssp SEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH--------HHHHHHHHTTCCCCCCTTSCHHHH---HHHHHTTCSSGGG
T ss_pred cCCchhhhhHHHHHHHHHHHcCCCCCccccCh--------HHHHHHHHcCCCCCCCCcChHHHH---HHHHHHcCCChhh
Confidence 345678999999999999998 9999753211 011111111111111111223444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 249 Rps~~~l 255 (268)
T 3sxs_A 249 RPTFQQL 255 (268)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 213
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=97.63 E-value=5.6e-06 Score=78.50 Aligned_cols=75 Identities=23% Similarity=0.472 Sum_probs=48.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|...... ......+.....+.......+++. .+...|++.+|++||
T Consensus 195 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~Rp 263 (303)
T 3a7i_A 195 AYDSKADIWSLGITAIELARGEPPHSELHP--------MKVLFLIPKNNPPTLEGNYSKPLK---EFVEACLNKEPSFRP 263 (303)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHSCCCCCCSSCCHHHH---HHHHHHCCSSGGGSC
T ss_pred CCCchhhhHHHHHHHHHHccCCCCCCCcCH--------HHHHHHhhcCCCCCCccccCHHHH---HHHHHHcCCChhhCc
Confidence 456789999999999999999999753211 011111111111111222223444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
|+.||+
T Consensus 264 s~~~ll 269 (303)
T 3a7i_A 264 TAKELL 269 (303)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 999874
No 214
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=97.63 E-value=3.1e-06 Score=79.90 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=48.3
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC---hhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN---QKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||||++++|+++|+.|....... ................+.. ....+++ .++...|++.+|+
T Consensus 191 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~li~~~l~~~p~ 263 (296)
T 4hgt_A 191 EQSRRDDLESLGYVLMYFNLGSLPWQGLKAA----TKRQKYERISEKKMSTPIEVLCKGYPSEF---ATYLNFCRSLRFD 263 (296)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS----SSSSHHHHHHHHHHHSCHHHHTTTSCHHH---HHHHHHHHTSCTT
T ss_pred CCCchhHHHHHHHHHHHHhcCCCCCcccchh----hhhhhhhhhhcccccchhhhhhccCCHHH---HHHHHHHHhcCCC
Confidence 4567899999999999999999998642211 0111111111111111100 1112333 4889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+++||
T Consensus 264 ~Rpt~~~l 271 (296)
T 4hgt_A 264 DKPDYSYL 271 (296)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
Confidence 99999886
No 215
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=97.62 E-value=6.8e-06 Score=78.23 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=50.4
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... ........+........+....+++. .+...|++.+|++
T Consensus 222 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 291 (313)
T 1t46_A 222 CVYTFESDVWSYGIFLWELFSLGSSPYPGMP-------VDSKFYKMIKEGFRMLSPEHAPAEMY---DIMKTCWDADPLK 291 (313)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-------SSHHHHHHHHHTCCCCCCTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCCCccc-------chhHHHHHhccCCCCCCcccCCHHHH---HHHHHHcCCCchh
Confidence 345678999999999999998 999875321 11112222333322222222334444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 292 Rps~~el 298 (313)
T 1t46_A 292 RPTFKQI 298 (313)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 216
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=97.62 E-value=5.6e-06 Score=76.99 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=48.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ....+.+........+....+++. ++...|++.+|++
T Consensus 182 ~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~ 250 (269)
T 4hcu_A 182 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------SEVVEDISTGFRLYKPRLASTHVY---QIMNHCWRERPED 250 (269)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--------HHHHHHHHTTCCCCCCTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH--------HHHHHHHhcCccCCCCCcCCHHHH---HHHHHHccCCccc
Confidence 345678999999999999999 9999753211 111111111111111222233444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.|+
T Consensus 251 Rps~~~l 257 (269)
T 4hcu_A 251 RPAFSRL 257 (269)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 217
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=97.61 E-value=7.5e-06 Score=78.38 Aligned_cols=74 Identities=24% Similarity=0.454 Sum_probs=48.1
Q ss_pred eccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++ |+.|...... ......+........+....+++. .+...|++.+|++|
T Consensus 215 ~~~~~~Di~slG~il~ell~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 283 (323)
T 3qup_A 215 LYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN--------AEIYNYLIGGNRLKQPPECMEEVY---DLMYQCWSADPKQR 283 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--------GGHHHHHHTTCCCCCCTTCCHHHH---HHHHHTTCSSGGGS
T ss_pred CCCCccchhhHHHHHHHHHhCCCCCccccCh--------HHHHHHHhcCCCCCCCCccCHHHH---HHHHHHccCChhhC
Confidence 45678999999999999999 8988753211 111111111111112222334444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
||+.|+
T Consensus 284 ps~~~l 289 (323)
T 3qup_A 284 PSFTCL 289 (323)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 998775
No 218
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=97.61 E-value=6.9e-06 Score=77.22 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=48.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ........+.............+++. .+...|++.+|++||
T Consensus 189 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~Rp 259 (290)
T 3fme_A 189 GYSVKSDIWSLGITMIELAILRFPYDSWGT------PFQQLKQVVEEPSPQLPADKFSAEFV---DFTSQCLKKNSKERP 259 (290)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTSCSSCCCSC------HHHHHHHHHHSCCCCCCTTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCccccCc------hHHHHHHHhccCCCCcccccCCHHHH---HHHHHHhhcChhhCc
Confidence 356789999999999999999999753110 00111122222111111122233444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
|+.||+
T Consensus 260 t~~e~l 265 (290)
T 3fme_A 260 TYPELM 265 (290)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 999874
No 219
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=97.61 E-value=5.8e-06 Score=78.20 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=46.7
Q ss_pred eccccccccchhhhhcccccCCCCccccccccc----CCCCCcc---hhhhh-hhccCCCCChh--HHHHHHHHHHHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSS----SSGPKIM---LINVL-DQRLSPPVNQK--IVQDIILVSTIAFA 503 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~----~~~~~~~---~~~~~-d~~~~~~~~~~--~~~~~~~~~~la~~ 503 (519)
..+.+.|+||||++++|+++|..|......... ....... ....+ .....+..+.. .......+.++...
T Consensus 199 ~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 278 (301)
T 3q4u_A 199 DSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKE 278 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHH
Confidence 345689999999999999999554432111100 0000001 11111 11111111111 01122334589999
Q ss_pred hcCCCCCCCCCcccC
Q 010041 504 CLSSQPKSRPTMQRI 518 (519)
Q Consensus 504 C~~~~p~~RP~m~~v 518 (519)
|++.+|++|||+.||
T Consensus 279 cl~~dP~~Rps~~~i 293 (301)
T 3q4u_A 279 CWYQNPSARLTALRI 293 (301)
T ss_dssp HCCSSGGGSCCHHHH
T ss_pred HhhcChhhCCCHHHH
Confidence 999999999999986
No 220
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=97.60 E-value=1.2e-05 Score=76.34 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=50.1
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.||||||++++|+++|..|........ ...........+....+..+ +++. .+...|++.+|++|
T Consensus 197 ~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~l~---~li~~~l~~dP~~R 267 (310)
T 3s95_A 197 RSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRT--MDFGLNVRGFLDRYCPPNCP----PSFF---PITVRCCDLDPEKR 267 (310)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBC--TTSSBCHHHHHHHTCCTTCC----TTHH---HHHHHHTCSSGGGS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhH--HHHhhhhhccccccCCCCCC----HHHH---HHHHHHccCChhhC
Confidence 345678999999999999999998875322111 11111222333333332222 2333 78999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
||+.||
T Consensus 268 ps~~~l 273 (310)
T 3s95_A 268 PSFVKL 273 (310)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 221
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=97.60 E-value=7.8e-06 Score=78.92 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=49.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|...... ....+...+.............+++. .+...|++.+|++||
T Consensus 233 ~~~~~~Di~slG~il~el~tg~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~Rp 303 (340)
T 3an0_A 233 GYSVKSDIWSLGITMIELAILRFPYDSWGT------PFQQLKQVVEEPSPQLPADKFSAEFV---DFTSQCLKKNSKERP 303 (340)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTSCSSCCCSC------HHHHHHHHHHSCCCCCCGGGSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCccccc------hHHHHHHHhcCCCCCCCcccCCHHHH---HHHHHHccCCcccCc
Confidence 356789999999999999999999763210 00111122221111111112234444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.||+
T Consensus 304 s~~ell 309 (340)
T 3an0_A 304 TYPELM 309 (340)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 999874
No 222
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=97.59 E-value=4.9e-06 Score=80.56 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=46.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh---------hHHHHHHHHHHHHHHh
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ---------KIVQDIILVSTIAFAC 504 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~~~~la~~C 504 (519)
..+.+.|+||||++++|+++|+.|...... ................+. ...+++. ++...|
T Consensus 236 ~~~~~~Di~slG~il~ell~g~~pf~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~ 305 (345)
T 2v62_A 236 ALSRRSDVEILGYCMLRWLCGKLPWEQNLK-------DPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIA---QFLVCA 305 (345)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTGGGTT-------CHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHH---HHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCcccccc-------ccHHHHHHHHhhcccccHHHHhhccccccHHHHH---HHHHHH
Confidence 457799999999999999999999852110 000000000000000111 1123444 889999
Q ss_pred cCCCCCCCCCcccC
Q 010041 505 LSSQPKSRPTMQRI 518 (519)
Q Consensus 505 ~~~~p~~RP~m~~v 518 (519)
++.+|++||++.||
T Consensus 306 l~~dp~~Rps~~~l 319 (345)
T 2v62_A 306 HSLAYDEKPNYQAL 319 (345)
T ss_dssp HTCCTTCCCCHHHH
T ss_pred hhcCcccCCCHHHH
Confidence 99999999999986
No 223
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=97.59 E-value=8.7e-06 Score=77.54 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=49.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... .......+++......+....+++. .+...|++.+|++||
T Consensus 215 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~Rp 285 (313)
T 3cek_A 215 KISPKSDVWSLGCILYYMTYGKTPFQQIINQ------ISKLHAIIDPNHEIEFPDIPEKDLQ---DVLKCCLKRDPKQRI 285 (313)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH------HHHHHHHHCTTSCCCCCCCSCHHHH---HHHHHHTCSSTTTSC
T ss_pred cCCchHHHHHHHHHHHHHHhCCCchhhHHHH------HHHHHHHHhcccccCCcccchHHHH---HHHHHHccCCcccCc
Confidence 4567899999999999999999997532100 0011222222222222222223444 788999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 286 s~~el 290 (313)
T 3cek_A 286 SIPEL 290 (313)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 224
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=97.59 E-value=6.1e-06 Score=77.32 Aligned_cols=75 Identities=24% Similarity=0.420 Sum_probs=49.0
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ....+.+........+....+++. ++...|++.+|++
T Consensus 196 ~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 264 (283)
T 3gen_A 196 SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN--------SETAEHIAQGLRLYRPHLASEKVY---TIMYSCWHEKADE 264 (283)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHTTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCccccCh--------hHHHHHHhcccCCCCCCcCCHHHH---HHHHHHccCChhH
Confidence 345678999999999999998 9999763211 111122222222222222223444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 265 Rps~~~l 271 (283)
T 3gen_A 265 RPTFKIL 271 (283)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 225
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=97.58 E-value=6.7e-06 Score=76.86 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=48.3
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ......+........+....+++. ++...|++.+|++
T Consensus 185 ~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 253 (279)
T 1qpc_A 185 GTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN--------PEVIQNLERGYRMVRPDNCPEELY---QLMRLCWKERPED 253 (279)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhhHHHHHHHHHHHhCCCCCCcccCH--------HHHHHHHhcccCCCCcccccHHHH---HHHHHHhccChhh
Confidence 345678999999999999999 8988753110 011111111111111222234444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 254 Rps~~~l 260 (279)
T 1qpc_A 254 RPTFDYL 260 (279)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9999886
No 226
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=97.57 E-value=5.8e-06 Score=79.61 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=49.0
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .......+........+.....++. .+...|++.+|++
T Consensus 234 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 302 (334)
T 2pvf_A 234 RVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--------VEELFKLLKEGHRMDKPANCTNELY---MMMRDCWHAVPSQ 302 (334)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCcChHHHHHHHHHHHHHHHhCCCCCcCcCC--------HHHHHHHHhcCCCCCCCccCCHHHH---HHHHHHccCChhh
Confidence 345678999999999999999 999875321 0111122222222222222234444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 303 Rps~~el 309 (334)
T 2pvf_A 303 RPTFKQL 309 (334)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 227
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=97.57 E-value=8.6e-06 Score=77.60 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=49.2
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|..... ........+........+....+++. ++...|++.+|++
T Consensus 225 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 294 (316)
T 2xir_A 225 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-------IDEEFCRRLKEGTRMRAPDYTTPEMY---QTMLDCWHGEPSQ 294 (316)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-------CSHHHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCcccc-------hhHHHHHHhccCccCCCCCCCCHHHH---HHHHHHcCCChhh
Confidence 345678999999999999998 999875321 11111122222221122222233444 7889999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 295 Rps~~el 301 (316)
T 2xir_A 295 RPTFSEL 301 (316)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 228
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=97.57 E-value=9.6e-06 Score=77.23 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=47.8
Q ss_pred eccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++ |+.|...... ....+.+........+....+++. ++...|++.+|++|
T Consensus 225 ~~~~~~Di~slG~il~el~~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 293 (313)
T 3brb_A 225 VYTSKSDVWAFGVTMWEIATRGMTPYPGVQN--------HEMYDYLLHGHRLKQPEDCLDELY---EIMYSCWRTDPLDR 293 (313)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--------GGHHHHHHTTCCCCCBTTCCHHHH---HHHHHTTCSSGGGS
T ss_pred CccchhhhHHHHHHHHHHHhcCCCCCccCCH--------HHHHHHHHcCCCCCCCccccHHHH---HHHHHHcCCChhhC
Confidence 45678999999999999999 8888753211 111111111111122222334444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|++.||
T Consensus 294 ps~~~l 299 (313)
T 3brb_A 294 PTFSVL 299 (313)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 229
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=97.57 E-value=2.7e-05 Score=73.81 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=50.1
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccC-------CCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSS-------SGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSS 507 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~ 507 (519)
.+.+.|+||||++++|+++|+.|.......... ......+.+.+++.+.. .+....+ .+..++..|++.
T Consensus 211 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~l~~li~~cl~~ 286 (307)
T 2nru_A 211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND-ADSTSVE---AMYSVASQCLHE 286 (307)
T ss_dssp ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSC-CCHHHHH---HHHHHHHHHTCS
T ss_pred CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccc-cchHHHH---HHHHHHHHHcCC
Confidence 456899999999999999999997632211000 00011122223333322 2222333 345899999999
Q ss_pred CCCCCCCcccC
Q 010041 508 QPKSRPTMQRI 518 (519)
Q Consensus 508 ~p~~RP~m~~v 518 (519)
+|.+||++.||
T Consensus 287 ~p~~Rps~~~l 297 (307)
T 2nru_A 287 KKNKRPDIKKV 297 (307)
T ss_dssp STTTSCCHHHH
T ss_pred CcccCcCHHHH
Confidence 99999999986
No 230
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=97.56 E-value=1.1e-05 Score=79.50 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=50.6
Q ss_pred eeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhc
Q 010041 428 KLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 428 ~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~ 505 (519)
++......+.++|+||+|++++|+++|+.|+.... .......+.....+. ......+++. .+...|+
T Consensus 317 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--------~~~~~~~i~~~~~~~~~~~~~~s~~~~---dli~~~L 385 (423)
T 4fie_A 317 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--------PLKAMKMIRDNLPPRLKNLHKVSPSLK---GFLDRLL 385 (423)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--------HHHHHHHHHHSCCCCCSCTTSSCHHHH---HHHHHHS
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--------HHHHHHHHHcCCCCCCcccccCCHHHH---HHHHHHc
Confidence 33334456789999999999999999999975211 111111111111111 1112234444 7889999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.||++|||+.|+
T Consensus 386 ~~dP~~R~ta~el 398 (423)
T 4fie_A 386 VRDPAQRATAAEL 398 (423)
T ss_dssp CSSTTTSCCHHHH
T ss_pred CCChhHCcCHHHH
Confidence 9999999999886
No 231
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=97.56 E-value=7.4e-06 Score=75.98 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=47.8
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ....+.+........+....+++. .+...|++.+|++
T Consensus 180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 248 (267)
T 3t9t_A 180 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------SEVVEDISTGFRLYKPRLASTHVY---QIMNHCWRERPED 248 (267)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--------HHHHHHHHTTCCCCCCTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCccchhchhhhHHHHHHHhccCCCCCCCCCH--------HHHHHHHhcCCcCCCCccCcHHHH---HHHHHHccCChhh
Confidence 345678999999999999999 8988753110 011111111111111222223444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.|+
T Consensus 249 Rps~~~l 255 (267)
T 3t9t_A 249 RPAFSRL 255 (267)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 232
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=97.56 E-value=7.5e-06 Score=79.08 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=48.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ......+........+.....++. .+...|++.+|++
T Consensus 251 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 319 (343)
T 1luf_A 251 NRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH--------EEVIYYVRDGNILACPENCPLELY---NLMRLCWSKLPAD 319 (343)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCcCcccccHHHHHHHHHHHhcCCCcCCCCCh--------HHHHHHHhCCCcCCCCCCCCHHHH---HHHHHHcccCccc
Confidence 345678999999999999999 9999753211 011111111111112222334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 320 Rps~~~~ 326 (343)
T 1luf_A 320 RPSFCSI 326 (343)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9999886
No 233
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=97.55 E-value=1e-05 Score=75.97 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=49.8
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|..... .....+.+........+....+++. ++...|++.+|++
T Consensus 187 ~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 255 (288)
T 3kfa_A 187 NKFSIKSDVWAFGVLLWEIATYGMSPYPGID--------LSQVYELLEKDYRMERPEGCPEKVY---ELMRACWQWNPSD 255 (288)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------GGGHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHhccCCCCCCCCCCHHHH---HHHHHHhCCChhh
Confidence 345678999999999999999 888875321 1112222222222222223334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 256 Rps~~~~ 262 (288)
T 3kfa_A 256 RPSFAEI 262 (288)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 234
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=97.55 E-value=1.2e-05 Score=76.44 Aligned_cols=74 Identities=20% Similarity=0.458 Sum_probs=47.2
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC----CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP----VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
.+.+.|+||||++++|+++|+.|...... .......+......+ ......+++. .+...|++.+|+
T Consensus 214 ~~~~~Di~slG~il~elltg~~Pf~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~ 283 (307)
T 3lb7_A 214 FSFQSDVYSYGIVLYELMTGELPYSHINN-------RDQIIFMVGRGYASPDLSKLYKNCPKAMK---RLVADCVKKVKE 283 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-------HHHHHHHHHHTCCCCCSTTSCSSSCHHHH---HHHHHHSCSSST
T ss_pred CCchhhHHHHHHHHHHHHhCCCCCccCCc-------HHHHHHHHhcCCCCcchhhhhcCCcHHHH---HHHHHHhhCChh
Confidence 45689999999999999999999863211 001111111111111 1112234444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.||
T Consensus 284 ~RPs~~~i 291 (307)
T 3lb7_A 284 ERPLFPQI 291 (307)
T ss_dssp TSCCHHHH
T ss_pred hCcCHHHH
Confidence 99999986
No 235
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=97.54 E-value=1.2e-05 Score=76.98 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=49.2
Q ss_pred eccccccccchhhhhcccccCCCCccccccc-----cc--CCCCCc-chhhh-hhhccCCCCChh--HHHHHHHHHHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSL-----SS--SSGPKI-MLINV-LDQRLSPPVNQK--IVQDIILVSTIAF 502 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~-----~~--~~~~~~-~~~~~-~d~~~~~~~~~~--~~~~~~~~~~la~ 502 (519)
..+.++|+||||++++|+++|+.|....... .. ...+.. ...+. ......+..... .......+..+..
T Consensus 214 ~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 293 (322)
T 3soc_A 214 DAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIE 293 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHH
Confidence 4556889999999999999999997531110 00 000000 01111 111122211111 0112233558999
Q ss_pred HhcCCCCCCCCCcccCC
Q 010041 503 ACLSSQPKSRPTMQRIS 519 (519)
Q Consensus 503 ~C~~~~p~~RP~m~~v~ 519 (519)
.|++.+|++|||+.||+
T Consensus 294 ~cl~~dP~~Rps~~ell 310 (322)
T 3soc_A 294 ECWDHDAEARLSAGCVG 310 (322)
T ss_dssp HHTCSSGGGSCCHHHHH
T ss_pred HHccCChhhCcCHHHHH
Confidence 99999999999999873
No 236
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=97.54 E-value=6.8e-06 Score=78.85 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=48.5
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|..... .....+.+........+....+++. .+...|++.+|.+
T Consensus 220 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 288 (327)
T 2yfx_A 220 GIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--------NQEVLEFVTSGGRMDPPKNCPGPVY---RIMTQCWQHQPED 288 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCCcC--------HHHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHhcCChhh
Confidence 345678999999999999998 888875311 1111122211111112222234444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 289 Rps~~~l 295 (327)
T 2yfx_A 289 RPNFAII 295 (327)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 237
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=97.53 E-value=2.1e-05 Score=75.38 Aligned_cols=84 Identities=17% Similarity=0.283 Sum_probs=47.9
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh---hHHHHHHHHHHHHHHhcCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ---KIVQDIILVSTIAFACLSSQ 508 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~la~~C~~~~ 508 (519)
....+.++|+||+|++++|+++|+.|......... ........+.+.......... ...+++ ..+...|++.+
T Consensus 183 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~---~~li~~~L~~d 258 (325)
T 3kn6_A 183 QNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT-CTSAVEIMKKIKKGDFSFEGEAWKNVSQEA---KDLIQGLLTVD 258 (325)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHH---HHHHHHHHCCC
T ss_pred CCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc-cccHHHHHHHHHcCCCCCCcccccCCCHHH---HHHHHHHCCCC
Confidence 33456789999999999999999999863221000 000001111111111111111 112333 38899999999
Q ss_pred CCCCCCcccCC
Q 010041 509 PKSRPTMQRIS 519 (519)
Q Consensus 509 p~~RP~m~~v~ 519 (519)
|++|||+.||+
T Consensus 259 P~~Rpt~~ell 269 (325)
T 3kn6_A 259 PNKRLKMSGLR 269 (325)
T ss_dssp TTTCCCTTTST
T ss_pred hhHCCCHHHHh
Confidence 99999999974
No 238
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=97.53 E-value=1.2e-05 Score=77.83 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=47.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... ....................+++. .+...|++.+|++||
T Consensus 229 ~~~~~~DiwslG~il~ell~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~Rp 298 (348)
T 1u5q_A 229 QYDGKVDVWSLGITCIELAERKPPLFNMNAM-------SALYHIAQNESPALQSGHWSEYFR---NFVDSCLQKIPQDRP 298 (348)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSCCCCCCCTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-------HHHHHHHhcCCCCCCCCCCCHHHH---HHHHHHcccChhhCc
Confidence 4567899999999999999999997532110 001111111111111112223444 788999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
|+.|++
T Consensus 299 s~~~ll 304 (348)
T 1u5q_A 299 TSEVLL 304 (348)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 998864
No 239
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=97.52 E-value=3.2e-06 Score=80.89 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=51.4
Q ss_pred eeccccccccchhhhhcccccCCCCccccccc----ccCCCC---CcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSL----SSSSGP---KIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~----~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
...+.+.|+||+|++++|+++|+.|....... ...... .....+.++.....+.+....+++. ++...|+
T Consensus 212 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l 288 (318)
T 3lxp_A 212 YKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVY---HLMKNCW 288 (318)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHH---HHHHHHc
Confidence 34567899999999999999999997532110 000000 0011222333333333333334544 8899999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.||
T Consensus 289 ~~dP~~Rps~~el 301 (318)
T 3lxp_A 289 ETEASFRPTFENL 301 (318)
T ss_dssp CSSGGGSCCHHHH
T ss_pred CCCcccCcCHHHH
Confidence 9999999999986
No 240
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=97.52 E-value=1.1e-05 Score=76.16 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=47.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|..|.... .........+......+.+....+++. ++...|++.+|++||
T Consensus 204 ~~~~~~Di~slG~il~~l~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~Rp 273 (298)
T 3pls_A 204 RFTTKSDVWSFGVLLWELLTRGAPPYRH-------IDPFDLTHFLAQGRRLPQPEYCPDSLY---QVMQQCWEADPAVRP 273 (298)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSCCTTTT-------SCGGGHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCChhhchhhHHHHHHHHhhCCCCCCcc-------CCHHHHHHHhhcCCCCCCCccchHHHH---HHHHHHccCChhhCc
Confidence 4567899999999999999977664311 011112222222222222222334444 889999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
|+.||
T Consensus 274 s~~~l 278 (298)
T 3pls_A 274 TFRVL 278 (298)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 241
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=97.51 E-value=3.3e-06 Score=79.81 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=47.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC---ChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV---NQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||||++++|+++|+.|........ ...............+. .....+++. ++...|++.+|+
T Consensus 194 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~ 266 (298)
T 1csn_A 194 EQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT----NKQKYERIGEKKQSTPLRELCAGFPEEFY---KYMHYARNLAFD 266 (298)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC----HHHHHHHHHHHHHHSCHHHHTTTSCHHHH---HHHHHHHHCCTT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCcchhhccc----cHHHHHHHHhhccCccHHHHHhhCcHHHH---HHHHHHhcCCcc
Confidence 45678999999999999999999986421100 00001111111111110 011123444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+++||
T Consensus 267 ~RP~~~~l 274 (298)
T 1csn_A 267 ATPDYDYL 274 (298)
T ss_dssp CCCCHHHH
T ss_pred cCCCHHHH
Confidence 99999886
No 242
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=97.51 E-value=1.3e-05 Score=74.29 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=46.4
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.++|+||+|++++|+++|+.|...-. .......+..... ..+....+++. .+...|++.+|++|||+
T Consensus 190 ~~~~DiwSlGvily~lltg~~PF~~~~-------~~~~~~~i~~~~~--~~p~~~s~~~~---~li~~~L~~dP~~R~s~ 257 (275)
T 3hyh_A 190 GPEVDVWSCGVILYVMLCRRLPFDDES-------IPVLFKNISNGVY--TLPKFLSPGAA---GLIKRMLIVNPLNRISI 257 (275)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHTCC--CCCTTSCHHHH---HHHHHHSCSSGGGSCCH
T ss_pred CChhhhHHHHHHHHHHHHCCCCCCCCC-------HHHHHHHHHcCCC--CCCCCCCHHHH---HHHHHHccCChhHCcCH
Confidence 468999999999999999999975211 0000111111111 11222234444 77899999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
+|+
T Consensus 258 ~ei 260 (275)
T 3hyh_A 258 HEI 260 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 243
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=97.51 E-value=9.9e-06 Score=76.57 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=48.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhcc-CCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRL-SPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||+|++++|+++|+.|....... ........... ....+....+++. .+...|++.+|++|
T Consensus 192 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~R 261 (297)
T 3fxz_A 192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPL-------RALYLIATNGTPELQNPEKLSAIFR---DFLNRCLEMDVEKR 261 (297)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHHCSCCCSCGGGSCHHHH---HHHHHHSCSSTTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHhCCCCCCCCccccCHHHH---HHHHHHccCChhHC
Confidence 4567899999999999999999997532110 00001111111 1111222233444 78999999999999
Q ss_pred CCcccCC
Q 010041 513 PTMQRIS 519 (519)
Q Consensus 513 P~m~~v~ 519 (519)
||+.|+.
T Consensus 262 ps~~ell 268 (297)
T 3fxz_A 262 GSAKELL 268 (297)
T ss_dssp CCHHHHT
T ss_pred cCHHHHh
Confidence 9999864
No 244
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=97.51 E-value=7.7e-06 Score=76.92 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=48.4
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ..............+.+....+++. .+...|++.+|++
T Consensus 199 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 268 (291)
T 1u46_A 199 RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-------SQILHKIDKEGERLPRPEDCPQDIY---NVMVQCWAHKPED 268 (291)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-------HHHHHHHHTSCCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-------HHHHHHHHccCCCCCCCcCcCHHHH---HHHHHHccCCccc
Confidence 345678999999999999999 9999753211 0001111111111111222334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 269 Rps~~~l 275 (291)
T 1u46_A 269 RPTFVAL 275 (291)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 245
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=97.49 E-value=1.6e-05 Score=75.16 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=46.7
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhh-hhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLIN-VLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
+.+.|+||+|++++|+++|+.|...... ..... ........+......+++. .+...|++.+|++||+
T Consensus 218 ~~~~Di~slG~~l~~l~~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R~s 286 (298)
T 2zv2_A 218 GKALDVWAMGVTLYCFVFGQCPFMDERI--------MCLHSKIKSQALEFPDQPDIAEDLK---DLITRMLDKNPESRIV 286 (298)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCSSSCCCHHHH---HHHHHHTCSCTTTSCC
T ss_pred CchhhhHhHHHHHHHHHHCCCCCCCccH--------HHHHHHHhcccCCCCCccccCHHHH---HHHHHHhhcChhhCCC
Confidence 4678999999999999999999753110 00111 1111111111112224444 8899999999999999
Q ss_pred cccCC
Q 010041 515 MQRIS 519 (519)
Q Consensus 515 m~~v~ 519 (519)
+.||.
T Consensus 287 ~~e~l 291 (298)
T 2zv2_A 287 VPEIK 291 (298)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99863
No 246
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=97.49 E-value=1.2e-05 Score=77.18 Aligned_cols=74 Identities=26% Similarity=0.391 Sum_probs=48.2
Q ss_pred eccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||+|++++|+++ |+.|...... ....+.+........+....+++. .+...|++.+|++|
T Consensus 217 ~~~~~~Di~slG~il~ellt~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 285 (327)
T 1fvr_A 217 VYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--------AELYEKLPQGYRLEKPLNCDDEVY---DLMRQCWREKPYER 285 (327)
T ss_dssp EECHHHHHHHHHHHHHHHHTTSCCTTTTCCH--------HHHHHHGGGTCCCCCCTTBCHHHH---HHHHHHTCSSGGGS
T ss_pred cCCchhcchHHHHHHHHHHcCCCCCCCCCcH--------HHHHHHhhcCCCCCCCCCCCHHHH---HHHHHHccCChhhC
Confidence 45678999999999999998 9999753210 011111211211122222234444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|++.|+
T Consensus 286 ps~~el 291 (327)
T 1fvr_A 286 PSFAQI 291 (327)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 247
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.48 E-value=1.5e-05 Score=76.30 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=47.4
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||||++++|+++|+.|...... ......+.....+. ......+++. .+...|++.+|+
T Consensus 216 ~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~ 284 (321)
T 2c30_A 216 SLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--------VQAMKRLRDSPPPKLKNSHKVSPVLR---DFLERMLVRDPQ 284 (321)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHSSCCCCTTGGGSCHHHH---HHHHHHSCSSTT
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHhcCCCCCcCccccCCHHHH---HHHHHHccCChh
Confidence 3456789999999999999999999753111 00111111111111 0111223444 778899999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.||
T Consensus 285 ~Rps~~el 292 (321)
T 2c30_A 285 ERATAQEL 292 (321)
T ss_dssp TSCCHHHH
T ss_pred hCcCHHHH
Confidence 99999986
No 248
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=97.48 E-value=1.8e-05 Score=74.56 Aligned_cols=75 Identities=16% Similarity=0.368 Sum_probs=47.7
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
.+.+.|+||||++++|+++|+.|....... .............+..+....+++. .+...|++.+|++||+
T Consensus 202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~Rps 272 (295)
T 2clq_A 202 YGKAADIWSLGCTIIEMATGKPPFYELGEP------QAAMFKVGMFKVHPEIPESMSAEAK---AFILKCFEPDPDKRAC 272 (295)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSCTTGGGSSH------HHHHHHHHHHCCCCCCCTTSCHHHH---HHHHHTTCSSTTTSCC
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCccCCCch------hHHHHhhccccccccccccCCHHHH---HHHHHHccCChhhCCC
Confidence 457899999999999999999997532110 0000011011111122222334444 7899999999999999
Q ss_pred cccC
Q 010041 515 MQRI 518 (519)
Q Consensus 515 m~~v 518 (519)
+.|+
T Consensus 273 ~~~l 276 (295)
T 2clq_A 273 ANDL 276 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 249
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=97.48 E-value=1e-05 Score=77.14 Aligned_cols=75 Identities=20% Similarity=0.420 Sum_probs=47.8
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
.+.+.|+||||++++|+++|+.|.+..... . ......+......+......+++. ++...|++.+|++||+
T Consensus 223 ~~~~~Di~slG~il~el~~g~~p~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~Rps 293 (317)
T 2buj_A 223 IDERTDVWSLGCVLYAMMFGEGPYDMVFQK----G--DSVALAVQNQLSIPQSPRHSSALW---QLLNSMMTVDPHQRPH 293 (317)
T ss_dssp ECTHHHHHHHHHHHHHHHHSSCTTHHHHHT----T--SCHHHHHHCC--CCCCTTSCHHHH---HHHHHHTCSSGGGSCC
T ss_pred CCchhhHHHHHHHHHHHHhCCCChhhhhcc----c--chhhHHhhccCCCCccccCCHHHH---HHHHHHhhcChhhCCC
Confidence 467899999999999999999997532111 0 011111111111111122233444 8899999999999999
Q ss_pred cccC
Q 010041 515 MQRI 518 (519)
Q Consensus 515 m~~v 518 (519)
+.||
T Consensus 294 ~~~l 297 (317)
T 2buj_A 294 IPLL 297 (317)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 250
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=97.48 E-value=9.6e-06 Score=79.13 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=48.7
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccC-----CCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSS-----SGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSS 507 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~ 507 (519)
...+.+.|+||||++++|+++|+.|+......... ......+.+.++..+.. ....+++. .++..|++.
T Consensus 236 ~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~li~~cl~~ 309 (364)
T 3op5_A 236 VAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPA---ANAPGEIA---KYMETVKLL 309 (364)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCT---TCCCHHHH---HHHHHHHTC
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhccc---ccCHHHHH---HHHHHHhcC
Confidence 34567899999999999999999998632110000 00000111222222211 11123444 889999999
Q ss_pred CCCCCCCcccC
Q 010041 508 QPKSRPTMQRI 518 (519)
Q Consensus 508 ~p~~RP~m~~v 518 (519)
+|++||+|.+|
T Consensus 310 ~p~~RP~~~~l 320 (364)
T 3op5_A 310 DYTEKPLYENL 320 (364)
T ss_dssp CTTCCCCHHHH
T ss_pred CCCCCCCHHHH
Confidence 99999999886
No 251
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=97.47 E-value=1.5e-05 Score=76.39 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=46.8
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|........... .. ......+.+.........+++. .+...|++.+|++||
T Consensus 205 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~Rp 278 (327)
T 3aln_A 205 GYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL-TQ--VVKGDPPQLSNSEEREFSPSFI---NFVNLCLTKDESKRP 278 (327)
T ss_dssp -CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CC--CCCSCCCCCCCCSSCCCCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHH-HH--HhcCCCCCCCCcccccCCHHHH---HHHHHHhhCChhhCc
Confidence 35678999999999999999999976322110000 00 0000001111111111223444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.||+
T Consensus 279 s~~ell 284 (327)
T 3aln_A 279 KYKELL 284 (327)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 999874
No 252
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=97.46 E-value=7e-06 Score=78.78 Aligned_cols=83 Identities=20% Similarity=0.391 Sum_probs=51.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccc-----cccC-CCCC-cchhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSS-----LSSS-SGPK-IMLINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~-----~~~~-~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
...+.+.|+||+|++++|+++|+.|...... .... ..+. ....+.+......+.+....+++. ++...|+
T Consensus 205 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l 281 (327)
T 3lxl_A 205 NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVH---ELMKLCW 281 (327)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHT
T ss_pred CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHH---HHHHHHc
Confidence 3456789999999999999999999643111 0000 0000 011222233333333333344554 8899999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.||
T Consensus 282 ~~dP~~Rps~~el 294 (327)
T 3lxl_A 282 APSPQDRPSFSAL 294 (327)
T ss_dssp CSSGGGSCCHHHH
T ss_pred CCChhhCcCHHHH
Confidence 9999999999986
No 253
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=97.46 E-value=1.3e-05 Score=74.97 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=47.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||+|++++|+++|+.|...... ......+ ......+ ......+++. ++...|++.+|+
T Consensus 183 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~ 251 (284)
T 3kk8_A 183 PYSKPVDIWACGVILYILLVGYPPFWDEDQ--------HRLYAQIKAGAYDYPSPEWDTVTPEAK---SLIDSMLTVNPK 251 (284)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCTTTTTTSCHHHH---HHHHHHSCSSTT
T ss_pred CCCcccchHHHHHHHHHHHHCCCCCCCCch--------hHHHHHHHhccccCCchhhcccCHHHH---HHHHHHcccChh
Confidence 456789999999999999999999752110 0111111 1111111 0111223444 889999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+|||+.|++
T Consensus 252 ~Rps~~~~l 260 (284)
T 3kk8_A 252 KRITADQAL 260 (284)
T ss_dssp TSCCHHHHT
T ss_pred hCCCHHHHh
Confidence 999999864
No 254
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=97.45 E-value=2e-05 Score=76.70 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.++|+||+|++++|+++|+.|..
T Consensus 235 ~~~~~~DiwslG~il~ell~g~~pf~ 260 (360)
T 3llt_A 235 GWDVSSDMWSFGCVLAELYTGSLLFR 260 (360)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCCccchHHHHHHHHHHHHCCCCCC
Confidence 45678999999999999999999974
No 255
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=97.45 E-value=3.2e-05 Score=72.00 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=46.9
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|...... ......................+++. .+...|++.+|++|||+
T Consensus 186 ~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~Rps~ 256 (276)
T 2yex_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSD------SCQEYSDWKEKKTYLNPWKKIDSAPL---ALLHKILVENPSARITI 256 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCSCT------TSHHHHHHHTTCTTSTTGGGSCHHHH---HHHHHHSCSSTTTSCCH
T ss_pred CCcchHHHHHHHHHHHHhCCCCCCCCch------HHHHHHHhhhcccccCchhhcCHHHH---HHHHHHCCCCchhCCCH
Confidence 5679999999999999999999753211 00011111111111111112223443 78999999999999999
Q ss_pred ccCC
Q 010041 516 QRIS 519 (519)
Q Consensus 516 ~~v~ 519 (519)
.||.
T Consensus 257 ~~il 260 (276)
T 2yex_A 257 PDIK 260 (276)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9874
No 256
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=97.44 E-value=1.4e-05 Score=76.34 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=46.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC-ChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV-NQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++|+.|...... ......+.....+.. .....+++. .+...|++.+|++|
T Consensus 219 ~~~~~~Di~slG~il~el~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~R 287 (319)
T 2y4i_B 219 PFSKHSDVFALGTIWYELHAREWPFKTQPA--------EAIIWQMGTGMKPNLSQIGMGKEIS---DILLFCWAFEQEER 287 (319)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSSSCCH--------HHHHHHHHTTCCCCCCCSSCCTTHH---HHHHHHHCSSTTTS
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHhccCCCCCCCcCCCCHHHH---HHHHHHhcCChhhC
Confidence 346789999999999999999999753211 001111111111111 111122333 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|++.||
T Consensus 288 pt~~~l 293 (319)
T 2y4i_B 288 PTFTKL 293 (319)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999886
No 257
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=97.44 E-value=2.2e-05 Score=75.75 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=46.8
Q ss_pred cccccccchhhhhcccccCC----------CCcccccccccCCCCCcchhh-hhhhccCCCCChhH--HHHHHHHHHHHH
Q 010041 436 TEKCDVYSFGVVALEILMGR----------HPGELLSSLSSSSGPKIMLIN-VLDQRLSPPVNQKI--VQDIILVSTIAF 502 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~----------~p~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~--~~~~~~~~~la~ 502 (519)
+.+.|+||||++++|+++|+ .|...... .........+ .......+..+... .+....+.++..
T Consensus 235 ~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 311 (342)
T 1b6c_B 235 FKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP---SDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMR 311 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC---SSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhccCcCCcccccccCccccCc---CcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHH
Confidence 46899999999999999994 44321110 0000001111 11222232222211 122334558999
Q ss_pred HhcCCCCCCCCCcccCC
Q 010041 503 ACLSSQPKSRPTMQRIS 519 (519)
Q Consensus 503 ~C~~~~p~~RP~m~~v~ 519 (519)
+|++.+|++|||+.||+
T Consensus 312 ~cl~~dp~~Rps~~~i~ 328 (342)
T 1b6c_B 312 ECWYANGAARLTALRIK 328 (342)
T ss_dssp HHCCSSGGGSCCHHHHH
T ss_pred HHhccChhhCCCHHHHH
Confidence 99999999999999863
No 258
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=97.42 E-value=2.8e-05 Score=72.50 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=44.8
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|........ ........... .+.....++. .+..+|++.+|++||
T Consensus 188 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~---~li~~~l~~dp~~Rp 255 (278)
T 3cok_A 188 AHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-------TLNKVVLADYE--MPSFLSIEAK---DLIHQLLRRNPADRL 255 (278)
T ss_dssp ----CTHHHHHHHHHHHHHHSSCSSCCCSCC------------CCSSCCC--CCTTSCHHHH---HHHHHHSCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCChhHHH-------HHHHHhhcccC--CccccCHHHH---HHHHHHcccCHhhCC
Confidence 45678999999999999999999975321100 00011111111 1111223444 889999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.||+
T Consensus 256 s~~~~l 261 (278)
T 3cok_A 256 SLSSVL 261 (278)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 999874
No 259
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=97.42 E-value=5.9e-06 Score=79.28 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=50.5
Q ss_pred eccccccccchhhhhcccccCCCCccccc-cccc--CCCCC--c---chhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLS-SLSS--SSGPK--I---MLINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~-~~~~--~~~~~--~---~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
..+.+.|+||+|++++|+++|+.|..... .+.. ..... . .+.+.+......+.+....+++. .+...|+
T Consensus 224 ~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~cl 300 (326)
T 2w1i_A 224 KFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIY---MIMTECW 300 (326)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHS
T ss_pred CCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHH---HHHHHHc
Confidence 45678999999999999999998865211 0000 00000 0 11122222222222233334544 8899999
Q ss_pred CCCCCCCCCcccCC
Q 010041 506 SSQPKSRPTMQRIS 519 (519)
Q Consensus 506 ~~~p~~RP~m~~v~ 519 (519)
+.+|++||++.||+
T Consensus 301 ~~dP~~Rps~~el~ 314 (326)
T 2w1i_A 301 NNNVNQRPSFRDLA 314 (326)
T ss_dssp CSSGGGSCCHHHHH
T ss_pred CCChhhCcCHHHHH
Confidence 99999999999863
No 260
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=97.40 E-value=2.2e-05 Score=74.14 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=46.2
Q ss_pred eeccccccccchhhhhcccccCCCC-cccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHP-GELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++|..| ..... .......+........+....+++. ++...|++.+|++
T Consensus 207 ~~~~~~~Di~slG~il~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~~ 275 (298)
T 3f66_A 207 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--------TFDITVYLLQGRRLLQPEYCPDPLY---EVMLKCWHPKAEM 275 (298)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC--------TTTHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCCccCC--------HHHHHHHHhcCCCCCCCccCCHHHH---HHHHHHcCCChhh
Confidence 3456789999999999999995554 33111 1111111111111111222233444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||+++||
T Consensus 276 Rps~~el 282 (298)
T 3f66_A 276 RPSFSEL 282 (298)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 261
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=97.40 E-value=3.8e-05 Score=73.47 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=47.1
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|...... ......................+++. .+...|++.+|++|||+
T Consensus 186 ~~~~DiwslG~il~~ll~g~~pf~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~R~t~ 256 (323)
T 3tki_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSD------SCQEYSDWKEKKTYLNPWKKIDSAPL---ALLHKILVENPSARITI 256 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCSSSCT------TSHHHHHHHTTCTTSTTGGGSCHHHH---HHHHHHSCSSTTTSCCH
T ss_pred CCcccHHHHHHHHHHHHhCCCCCCCCch------HHHHHHHHhcccccCCccccCCHHHH---HHHHHHccCChhhCcCH
Confidence 5679999999999999999999853211 01111111111111111112223443 78999999999999999
Q ss_pred ccCC
Q 010041 516 QRIS 519 (519)
Q Consensus 516 ~~v~ 519 (519)
.||.
T Consensus 257 ~eil 260 (323)
T 3tki_A 257 PDIK 260 (323)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8863
No 262
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=97.39 E-value=1.9e-05 Score=75.93 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=45.1
Q ss_pred cccccchhhhhcccccCCCCcccccccc----cCCCCCcc---hhhhh-hhccCCCCChh--HHHHHHHHHHHHHHhcCC
Q 010041 438 KCDVYSFGVVALEILMGRHPGELLSSLS----SSSGPKIM---LINVL-DQRLSPPVNQK--IVQDIILVSTIAFACLSS 507 (519)
Q Consensus 438 ~~dv~sfg~~~le~l~g~~p~~~~~~~~----~~~~~~~~---~~~~~-d~~~~~~~~~~--~~~~~~~~~~la~~C~~~ 507 (519)
++|+||||++++|+++|+.|........ ........ ..+.+ .....+..+.. ..+....+.++...|++.
T Consensus 232 ~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~ 311 (337)
T 3mdy_A 232 MADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAH 311 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCS
T ss_pred ccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhh
Confidence 5899999999999999966543211110 00000101 11111 11222222211 011223345899999999
Q ss_pred CCCCCCCcccC
Q 010041 508 QPKSRPTMQRI 518 (519)
Q Consensus 508 ~p~~RP~m~~v 518 (519)
+|++|||+.||
T Consensus 312 dP~~Rps~~el 322 (337)
T 3mdy_A 312 NPASRLTALRV 322 (337)
T ss_dssp SGGGSCCHHHH
T ss_pred ChhhCCCHHHH
Confidence 99999999986
No 263
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=97.38 E-value=1.7e-05 Score=74.87 Aligned_cols=75 Identities=9% Similarity=0.202 Sum_probs=48.8
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
....+.++|+||+|++++|+++|+.|...-. .......+..... ..+....+++. .+...|++.+|++
T Consensus 208 ~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-------~~~~~~~i~~~~~--~~p~~~s~~~~---dli~~lL~~dp~~ 275 (311)
T 4aw0_A 208 EKSACKSSDLWALGCIIYQLVAGLPPFRAGN-------EGLIFAKIIKLEY--DFPEKFFPKAR---DLVEKLLVLDATK 275 (311)
T ss_dssp HSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHTCC--CCCTTCCHHHH---HHHHHHSCSSGGG
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHcCCC--CCCcccCHHHH---HHHHHHccCCHhH
Confidence 3345678999999999999999999975211 0001111222111 11222234444 7889999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||.+|+
T Consensus 276 R~t~~e~ 282 (311)
T 4aw0_A 276 RLGCEEM 282 (311)
T ss_dssp STTSGGG
T ss_pred CcChHHH
Confidence 9999885
No 264
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=97.38 E-value=1.2e-05 Score=77.21 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=43.8
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... .........+.......++ ..+...|++.+|++||
T Consensus 229 ~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---~~li~~~l~~~p~~Rp 294 (337)
T 3ll6_A 229 PIGEKQDIWALGCILYLLCFRQHPFEDGAKL-----------RIVNGKYSIPPHDTQYTVF---HSLIRAMLQVNPEERL 294 (337)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCCTTCCSSGGG---HHHHHHHSCSSGGGSC
T ss_pred CCChHHhHHHHHHHHHHHHhCCCCCcchhHH-----------HhhcCcccCCcccccchHH---HHHHHHHccCChhhCc
Confidence 4567899999999999999999997532111 0111111111111111223 3789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 295 s~~e~ 299 (337)
T 3ll6_A 295 SIAEV 299 (337)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 265
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=97.38 E-value=1.6e-05 Score=75.96 Aligned_cols=75 Identities=27% Similarity=0.330 Sum_probs=47.6
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||+|++++|+++ |+.|...... ......+........+....+++. .+...|++.+|++
T Consensus 215 ~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 283 (322)
T 1p4o_A 215 GVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--------EQVLRFVMEGGLLDKPDNCPDMLF---ELMRMCWQYNPKM 283 (322)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--------HHHHHHHHTTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHhcCCCccccCCH--------HHHHHHHHcCCcCCCCCCCCHHHH---HHHHHHcCCCccc
Confidence 345678999999999999999 8888753210 011111111111111222234444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 284 Rps~~e~ 290 (322)
T 1p4o_A 284 RPSFLEI 290 (322)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 266
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=97.37 E-value=2.6e-05 Score=72.64 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=46.3
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|...... ......+..... ..+....+++. .+...|++.+|++|||+
T Consensus 190 ~~~~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~---~li~~~l~~dP~~Rps~ 257 (275)
T 2eue_A 190 GPEVDVWSCGVILYVMLCRRLPFDDESI--------PVLFKNISNGVY-TLPKFLSPGAA---GLIKRMLIVNPLNRISI 257 (275)
T ss_dssp -THHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCC-CCCTTSCHHHH---HHHHHHSCSSGGGSCCH
T ss_pred CcccchHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhCCC-CCCccCCHHHH---HHHHHHhhcCHhHCCCH
Confidence 5689999999999999999999753110 011111111111 11122223444 78999999999999999
Q ss_pred ccCC
Q 010041 516 QRIS 519 (519)
Q Consensus 516 ~~v~ 519 (519)
.|++
T Consensus 258 ~e~l 261 (275)
T 2eue_A 258 HEIM 261 (275)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9874
No 267
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=97.36 E-value=1.6e-05 Score=75.59 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=46.9
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhh-ccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQ-RLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++|+.|..... .........+.. ...........+++. ++...|++.+|++|
T Consensus 212 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 282 (310)
T 2wqm_A 212 GYNFKSDIWSLGCLLYEMAALQSPFYGDK------MNLYSLCKKIEQCDYPPLPSDHYSEELR---QLVNMCINPDPEKR 282 (310)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTC---------CCHHHHHHHHHTTCSCCCCTTTSCHHHH---HHHHHHTCSSGGGS
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCcccc------hhHHHHHHHhhcccCCCCcccccCHHHH---HHHHHHcCCChhhC
Confidence 35678999999999999999999974211 000011111111 111111112223444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
|++.||
T Consensus 283 ps~~~i 288 (310)
T 2wqm_A 283 PDVTYV 288 (310)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 999986
No 268
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=97.36 E-value=2.8e-05 Score=73.04 Aligned_cols=74 Identities=27% Similarity=0.545 Sum_probs=47.4
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhc-cCCC---CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQR-LSPP---VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~-~~~~---~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
.+.+.|+||+|++++|+++|+.|...... .....+.+... ..+. ......+++. .+...|++.+|+
T Consensus 202 ~~~~~Di~slG~il~el~~g~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~~p~ 271 (289)
T 3og7_A 202 YSFQSDVYAFGIVLYELMTGQLPYSNINN-------RDQIIEMVGRGSLSPDLSKVRSNCPKRMK---RLMAECLKKKRD 271 (289)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCTTSSCCC-------HHHHHHHHHHTSCCCCTTSSCTTSCHHHH---HHHHHHTCSSGG
T ss_pred CCcccchHHHHHHHHHHHHCCCCccccch-------HHHHHHHhcccccCcchhhccccCCHHHH---HHHHHHccCChh
Confidence 45689999999999999999999753211 01111111111 1111 1112223444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.||
T Consensus 272 ~Rps~~el 279 (289)
T 3og7_A 272 ERPSFPRI 279 (289)
T ss_dssp GSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999886
No 269
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=97.35 E-value=1.9e-05 Score=74.38 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=48.4
Q ss_pred eeeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcC
Q 010041 427 GKLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLS 506 (519)
Q Consensus 427 ~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~ 506 (519)
+++......+.++|+||+|++++|+++|+.|...... ......+...... .+....+++. .+...|++
T Consensus 195 PE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-------~~~~~~i~~~~~~--~p~~~s~~~~---~li~~~L~ 262 (304)
T 3ubd_A 195 PEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-------KETMTMILKAKLG--MPQFLSPEAQ---SLLRMLFK 262 (304)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTC
T ss_pred HHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-------HHHHHHHHcCCCC--CCCcCCHHHH---HHHHHHcc
Confidence 3333344566789999999999999999999752110 0011111221111 2222334544 78899999
Q ss_pred CCCCCCCCc
Q 010041 507 SQPKSRPTM 515 (519)
Q Consensus 507 ~~p~~RP~m 515 (519)
.+|++|||.
T Consensus 263 ~dP~~R~ta 271 (304)
T 3ubd_A 263 RNPANRLGA 271 (304)
T ss_dssp SSGGGSTTC
T ss_pred cCHHHCCCC
Confidence 999999984
No 270
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.34 E-value=1.5e-05 Score=75.79 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=44.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|......+. ........+.......+++ ..+...|++.+|++||
T Consensus 231 ~~~~~~DiwslG~il~el~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l---~~li~~~L~~dP~~Rp 297 (311)
T 3p1a_A 231 SYGTAADVFSLGLTILEVACNMELPHGGEGWQ----------QLRQGYLPPEFTAGLSSEL---RSVLVMMLEPDPKLRA 297 (311)
T ss_dssp CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHH----------HHTTTCCCHHHHTTSCHHH---HHHHHHHSCSSTTTSC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCccHHH----------HHhccCCCcccccCCCHHH---HHHHHHHcCCChhhCc
Confidence 35678999999999999999976643211110 1111111000011112333 3889999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
|+.|+
T Consensus 298 t~~el 302 (311)
T 3p1a_A 298 TAEAL 302 (311)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 271
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=97.34 E-value=1.9e-05 Score=74.18 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=46.6
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC-CCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP-PVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
.+.+.|+||+|++++|+++|+.|....... ......+.....+ ..+....+++ .++...|++.+|++||
T Consensus 206 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l---~~li~~~l~~dp~~Rp 275 (290)
T 1t4h_A 206 YDESVDVYAFGMCMLEMATSEYPYSECQNA-------AQIYRRVTSGVKPASFDKVAIPEV---KEIIEGCIRQNKDERY 275 (290)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-------HHHHHHHTTTCCCGGGGGCCCHHH---HHHHHHHSCSSGGGSC
T ss_pred CCCcchHHHHHHHHHHHHhCCCCCCCcCcH-------HHHHHHHhccCCccccCCCCCHHH---HHHHHHHccCChhhCC
Confidence 456899999999999999999997532110 0011111111111 1111112333 4889999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
|+.||
T Consensus 276 s~~el 280 (290)
T 1t4h_A 276 SIKDL 280 (290)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 272
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=97.33 E-value=2.7e-05 Score=74.20 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=47.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccC-CCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLS-PPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++|+.|....... ............. .+.......++. .+...|++.+|.+|
T Consensus 205 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 275 (318)
T 2dyl_A 205 DYDIRADVWSLGISLVELATGQFPYKNCKTD------FEVLTKVLQEEPPLLPGHMGFSGDFQ---SFVKDCLTKDHRKR 275 (318)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH------HHHHHHHHHSCCCCCCSSSCCCHHHH---HHHHHHTCSCTTTS
T ss_pred CCccccchhhHHHHHHHHHhCCCCCCCCCcc------HHHHHHHhccCCCCCCccCCCCHHHH---HHHHHHccCChhHC
Confidence 3557899999999999999999997531100 0001111111100 000111223444 78999999999999
Q ss_pred CCcccCC
Q 010041 513 PTMQRIS 519 (519)
Q Consensus 513 P~m~~v~ 519 (519)
|++.||+
T Consensus 276 ps~~~ll 282 (318)
T 2dyl_A 276 PKYNKLL 282 (318)
T ss_dssp CCHHHHT
T ss_pred cCHHHHh
Confidence 9998874
No 273
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=97.33 E-value=3.6e-05 Score=71.73 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=46.7
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh----hHHHHHHHHHHHHHHhcCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ----KIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~la~~C~~~~p~ 510 (519)
.+.+.|+||+|++++|+++|+.|...... ............. .+. ...+++. .+...|++.+|+
T Consensus 184 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~li~~~l~~dp~ 251 (277)
T 3f3z_A 184 YGPECDEWSAGVMMYVLLCGYPPFSAPTD-------SEVMLKIREGTFT--FPEKDWLNVSPQAE---SLIRRLLTKSPK 251 (277)
T ss_dssp BCTTHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCHHHHTTSCHHHH---HHHHHHTCSSTT
T ss_pred CCchhhehhHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHhCCCC--CCchhhhcCCHHHH---HHHHHHccCChh
Confidence 46789999999999999999999753110 0001111111111 111 1123333 889999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+||++.|++
T Consensus 252 ~R~s~~~~l 260 (277)
T 3f3z_A 252 QRITSLQAL 260 (277)
T ss_dssp TSCCHHHHT
T ss_pred hCcCHHHHh
Confidence 999998863
No 274
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=97.31 E-value=5.1e-05 Score=72.51 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=47.3
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC---hhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN---QKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||||++++|+++|+.|..... ....+.+.+........+ ....++ +..+...|++.+|+
T Consensus 195 ~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~l~~dP~ 264 (322)
T 2ycf_A 195 GYNRAVDCWSLGVILFICLSGYPPFSEHR-------TQVSLKDQITSGKYNFIPEVWAEVSEK---ALDLVKKLLVVDPK 264 (322)
T ss_dssp TCTTHHHHHHHHHHHHHHHHSSCSSCSTT-------CSSCHHHHHHHTCCCCCHHHHTTSCHH---HHHHHHHHSCSSTT
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCcccc-------hHHHHHHHHHhCccccCchhhhhcCHH---HHHHHHHHcccCHh
Confidence 34578999999999999999999975321 111111222111111110 011233 34889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.|+
T Consensus 265 ~Rps~~~~ 272 (322)
T 2ycf_A 265 ARFTTEEA 272 (322)
T ss_dssp TSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999876
No 275
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=97.31 E-value=1.9e-05 Score=75.72 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=47.8
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhc--cCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQR--LSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||+|++++|+++|+.|....... .......... ...+......+++. .+...|++.+|+
T Consensus 208 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~ 277 (327)
T 3lm5_A 208 DPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ-------ETYLNISQVNVDYSEETFSSVSQLAT---DFIQSLLVKNPE 277 (327)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHTCCCCCTTTTTTSCHHHH---HHHHHHSCSSGG
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCCCCCch-------HHHHHHHhcccccCchhhcccCHHHH---HHHHHHcCCChh
Confidence 34567899999999999999999997531100 0000111101 11111111223444 789999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+|||+.|++
T Consensus 278 ~Rpt~~~ll 286 (327)
T 3lm5_A 278 KRPTAEICL 286 (327)
T ss_dssp GSCCHHHHT
T ss_pred hCcCHHHHh
Confidence 999998864
No 276
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=97.30 E-value=9.5e-06 Score=82.08 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=47.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC---hhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN---QKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.||||||++++|+++|+.|+...... ........+.......... ....++ +..++..|++.+|+
T Consensus 189 ~~s~~sDvwSlGvil~elltG~~Pf~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~p~~---l~~li~~cl~~dP~ 261 (483)
T 3sv0_A 189 EQSRRDDLESLGYVLMYFLRGSLPWQGLKAG----TKKQKYEKISEKKVATSIEALCRGYPTE---FASYFHYCRSLRFD 261 (483)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS----SHHHHHHHHHHHHHHSCHHHHHTTSCHH---HHHHHHHHHTCCTT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCccccch----hHHHHHHHHhhccccccHHHHhcCCcHH---HHHHHHHHhcCChh
Confidence 4567899999999999999999998642210 0000011111111111000 011233 34889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+|.+|
T Consensus 262 ~RPs~~el 269 (483)
T 3sv0_A 262 DKPDYSYL 269 (483)
T ss_dssp CCCCHHHH
T ss_pred hCcCHHHH
Confidence 99999876
No 277
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=97.28 E-value=3.5e-05 Score=71.92 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=47.3
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ......+.. .....+....+++. .+...|++.+|++||
T Consensus 183 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~---~li~~~l~~~p~~Rp 250 (279)
T 3fdn_A 183 MHDEKVDLWSLGVLCYEFLVGKPPFEANTY--------QETYKRISR-VEFTFPDFVTEGAR---DLISRLLKHNPSQRP 250 (279)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--------HHHHHHHHH-TCCCCCTTSCHHHH---HHHHHHCCSSGGGSC
T ss_pred CCCccchhHhHHHHHHHHHHCCCCCCCCcH--------HHHHHHHHh-CCCCCCCcCCHHHH---HHHHHHhccChhhCC
Confidence 446789999999999999999999753110 001111111 11111222233444 789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 251 s~~e~ 255 (279)
T 3fdn_A 251 MLREV 255 (279)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99986
No 278
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=97.27 E-value=1.7e-05 Score=75.03 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=50.1
Q ss_pred eeccccccccchhhhhcccccCCCCcccccc----cccCCCCCcc---hhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSS----LSSSSGPKIM---LINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~----~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
...+.+.|+||+|++++|+++|+.|...... .......... ....+......+.+....+++. .+...|+
T Consensus 204 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l 280 (302)
T 4e5w_A 204 SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVY---QLMRKCW 280 (302)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHH---HHHHHTT
T ss_pred CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHH---HHHHHHc
Confidence 3456789999999999999999998542110 0000011111 1112222222222233334554 8899999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.||
T Consensus 281 ~~dp~~Rps~~~l 293 (302)
T 4e5w_A 281 EFQPSNRTSFQNL 293 (302)
T ss_dssp CSSGGGSCCHHHH
T ss_pred CCCCCCCCCHHHH
Confidence 9999999999886
No 279
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=97.26 E-value=4.8e-05 Score=74.49 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=45.2
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.++|+||||++++|+++|+.|....... ... ..+.... ... .+++. .+...|++.+|++||
T Consensus 289 ~~~~~~DvwSlG~il~elltg~~Pf~~~~~~-------~~~-~~~~~~~-~~~----~~~~~---~li~~~L~~dp~~Rp 352 (377)
T 3byv_A 289 LMTFSFDAWALGLVIYWIWCADLPITKDAAL-------GGS-EWIFRSC-KNI----PQPVR---ALLEGFLRYPKEDRL 352 (377)
T ss_dssp ECCHHHHHHHHHHHHHHHHHSSCCC-------------CCS-GGGGSSC-CCC----CHHHH---HHHHHHTCSSGGGCC
T ss_pred cCChhhhHHHHHHHHHHHHHCCCCCcccccc-------cch-hhhhhhc-cCC----CHHHH---HHHHHHcCCCchhCC
Confidence 4567999999999999999999997532110 000 1111111 112 23444 789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 353 t~~e~ 357 (377)
T 3byv_A 353 LPLQA 357 (377)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 280
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=97.26 E-value=2.9e-05 Score=81.83 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=49.0
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.+.|+||||++++|+++ |+.|...... ......+......+.+....+++. .+...|++.+|++
T Consensus 567 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~ 635 (656)
T 2j0j_A 567 RRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--------NDVIGRIENGERLPMPPNCPPTLY---SLMTKCWAYDPSR 635 (656)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--------HHHHHHHHHTCCCCCCTTCCHHHH---HHHHHHTCSSGGG
T ss_pred CCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH--------HHHHHHHHcCCCCCCCccccHHHH---HHHHHHcCCChhH
Confidence 345678999999999999997 8888753211 111111211212222223334444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 636 RPs~~el 642 (656)
T 2j0j_A 636 RPRFTEL 642 (656)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 281
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=97.25 E-value=6.1e-05 Score=71.14 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=46.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV--NQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.++|+||+|++++|+++|+.|............... .........+. .....+++. .+...|++.+|+
T Consensus 173 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dP~ 246 (299)
T 3m2w_A 173 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKT---RIRMGQYEFPNPEWSEVSEEVK---MLIRNLLKTEPT 246 (299)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCC---SSCTTCCSSCHHHHTTSCHHHH---HHHHHHTCSSTT
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHH---HHhhccccCCchhcccCCHHHH---HHHHHHcccChh
Confidence 3466789999999999999999999753221110000000 00000000000 011123344 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.||
T Consensus 247 ~Rps~~e~ 254 (299)
T 3m2w_A 247 QRMTITEF 254 (299)
T ss_dssp TSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999886
No 282
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=97.25 E-value=5.3e-05 Score=73.08 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=47.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC--hhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN--QKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||||++++|+++|+.|...... ..............+.+ ....+++. .+...|++.+|++
T Consensus 252 ~~~~~~DiwslG~il~el~~g~~pf~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~~p~~ 321 (345)
T 3hko_A 252 SYGPKCDAWSAGVLLHLLLMGAVPFPGVND-------ADTISQVLNKKLCFENPNYNVLSPLAR---DLLSNLLNRNVDE 321 (345)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCCTTSGGGGGSCHHHH---HHHHHHSCSCTTT
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCCCCCh-------HHHHHHHHhcccccCCcccccCCHHHH---HHHHHHcCCChhH
Confidence 345689999999999999999999753211 00111222222111111 11223444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.|+
T Consensus 322 Rps~~~~ 328 (345)
T 3hko_A 322 RFDAMRA 328 (345)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9999886
No 283
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=97.24 E-value=5.5e-05 Score=71.17 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=47.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|.+..... ............ .+....+++. .+...|++.+|++||
T Consensus 191 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~---~li~~~l~~~p~~Rp 258 (294)
T 2rku_A 191 GHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-------ETYLRIKKNEYS--IPKHINPVAA---SLIQKMLQTDPTARP 258 (294)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-------HHHHHHHTTCCC--CCTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHhhccCC--CccccCHHHH---HHHHHHcccChhhCc
Confidence 4567899999999999999999997532100 001111111111 1112223343 789999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.|++
T Consensus 259 s~~~ll 264 (294)
T 2rku_A 259 TINELL 264 (294)
T ss_dssp CGGGGG
T ss_pred CHHHHh
Confidence 999974
No 284
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=97.23 E-value=7.3e-05 Score=70.56 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=47.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC-CCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP-PVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.+.|+||||++++|+++|+.|....... ............. ..+.....++. .+...|++.+|++|
T Consensus 198 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~R 267 (302)
T 2j7t_A 198 PYDYKADIWSLGITLIEMAQIEPPHHELNPM-------RVLLKIAKSDPPTLLTPSKWSVEFR---DFLKIALDKNPETR 267 (302)
T ss_dssp TTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSCCCCCSSGGGSCHHHH---HHHHHHSCSCTTTS
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCCccCCHH-------HHHHHHhccCCcccCCccccCHHHH---HHHHHHcccChhhC
Confidence 3457899999999999999999997632110 0011111111000 11122223444 78999999999999
Q ss_pred CCcccCC
Q 010041 513 PTMQRIS 519 (519)
Q Consensus 513 P~m~~v~ 519 (519)
||+.||+
T Consensus 268 ps~~~ll 274 (302)
T 2j7t_A 268 PSAAQLL 274 (302)
T ss_dssp CCHHHHT
T ss_pred CCHHHHh
Confidence 9998864
No 285
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=97.23 E-value=4.3e-05 Score=71.49 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=45.3
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
.+.++|+||||++++|+++|+.|...... ......... +..+....+++. ++...|++.+|++|||
T Consensus 208 ~~~~~Di~slG~il~~l~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~---~li~~~l~~dp~~Rps 273 (289)
T 1x8b_A 208 HLPKADIFALALTVVCAAGAEPLPRNGDQ----------WHEIRQGRL-PRIPQVLSQEFT---ELLKVMIHPDPERRPS 273 (289)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCCCSSSHH----------HHHHHTTCC-CCCSSCCCHHHH---HHHHHHTCSSGGGSCC
T ss_pred CCchhhHHHHHHHHHHHhcCCCCCcchhH----------HHHHHcCCC-CCCCcccCHHHH---HHHHHHhCCCcccCCC
Confidence 44689999999999999999876432111 111111111 111222234444 7899999999999999
Q ss_pred cccC
Q 010041 515 MQRI 518 (519)
Q Consensus 515 m~~v 518 (519)
+.|+
T Consensus 274 ~~~l 277 (289)
T 1x8b_A 274 AMAL 277 (289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 286
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=97.23 E-value=1.5e-05 Score=76.48 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=47.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC---ChhHHHHHHHHHHHHHHhcCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV---NQKIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~la~~C~~~~p 509 (519)
...+.+.|+||||++++|+++|+.|....... ........+.......+. ....+ .+.++...|++.+|
T Consensus 192 ~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~p----~~~~li~~~l~~~p 263 (330)
T 2izr_A 192 KEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD----TLKERYQKIGDTKRATPIEVLCENFP----EMATYLRYVRRLDF 263 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS----SHHHHHHHHHHHHHHSCHHHHTTTCH----HHHHHHHHHHHCCT
T ss_pred CCCCchhHHHHHHHHHHHHhcCCCCccccccc----cHHHHHHHHHhhhccCCHHHHhccCh----HHHHHHHHHHhCCC
Confidence 34567899999999999999999998632100 000001111111111110 00012 34488999999999
Q ss_pred CCCCCcccC
Q 010041 510 KSRPTMQRI 518 (519)
Q Consensus 510 ~~RP~m~~v 518 (519)
.+||++.+|
T Consensus 264 ~~RP~~~~l 272 (330)
T 2izr_A 264 FEKPDYDYL 272 (330)
T ss_dssp TCCCCHHHH
T ss_pred CCCCCHHHH
Confidence 999999876
No 287
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=97.22 E-value=2.2e-05 Score=75.06 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=47.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||+|++++|+++|+.|...... ......+.......+. .....+++ ..+...|++.+|++
T Consensus 179 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~-------~~~~~~i~~~~~~~~~~~~~~~s~~~---~~li~~~L~~dp~~ 248 (321)
T 1tki_A 179 VVSTATDMWSLGTLVYVLLSGINPFLAETN-------QQIIENIMNAEYTFDEEAFKEISIEA---MDFVDRLLVKERKS 248 (321)
T ss_dssp EECHHHHHHHHHHHHHHHHHSSCTTCCSSH-------HHHHHHHHHTCCCCCHHHHTTSCHHH---HHHHHTTSCSSGGG
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCcCCCH-------HHHHHHHHcCCCCCChhhhccCCHHH---HHHHHHHcCCChhH
Confidence 456789999999999999999999752110 0011111111111100 00112333 38899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 249 Rpt~~e~ 255 (321)
T 1tki_A 249 RMTASEA 255 (321)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 288
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=97.22 E-value=6.2e-05 Score=71.53 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=47.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||||++++|+++|+.|....... .....+....... .+....+++. .+...|++.+|++
T Consensus 201 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 269 (314)
T 3com_A 201 GYNCVADIWSLGITAIEMAEGKPPYADIHPM--------RAIFMIPTNPPPTFRKPELWSDNFT---DFVKQCLVKSPEQ 269 (314)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--------HHHHHHHHSCCCCCSSGGGSCHHHH---HHHHHHTCSCTTT
T ss_pred CCCccccHHHHHHHHHHHHhCCCCCCCCChH--------HHHHHHhcCCCcccCCcccCCHHHH---HHHHHHccCChhh
Confidence 4567899999999999999999997532211 0000111111110 1111223444 8899999999999
Q ss_pred CCCcccCC
Q 010041 512 RPTMQRIS 519 (519)
Q Consensus 512 RP~m~~v~ 519 (519)
||++.|++
T Consensus 270 Rpt~~~ll 277 (314)
T 3com_A 270 RATATQLL 277 (314)
T ss_dssp SCCHHHHT
T ss_pred CcCHHHHH
Confidence 99998864
No 289
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=97.22 E-value=2.6e-05 Score=74.73 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=46.2
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh----hHHHHHHHHHHHHHHhcCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ----KIVQDIILVSTIAFACLSSQ 508 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~la~~C~~~~ 508 (519)
...+.+.|+||+|++++|+++|+.|...... ............ ..+. ...+++ ..+...|++.+
T Consensus 192 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~li~~~L~~d 259 (326)
T 2y0a_A 192 EPLGLEADMWSIGVITYILLSGASPFLGDTK-------QETLANVSAVNY--EFEDEYFSNTSALA---KDFIRRLLVKD 259 (326)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-------HHHHHHHHHTCC--CCCHHHHTTSCHHH---HHHHHHHSCSS
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH-------HHHHHHHHhcCC--CcCccccccCCHHH---HHHHHHHccCC
Confidence 3456789999999999999999999742110 000011111000 1111 111233 37899999999
Q ss_pred CCCCCCcccC
Q 010041 509 PKSRPTMQRI 518 (519)
Q Consensus 509 p~~RP~m~~v 518 (519)
|++|||+.|+
T Consensus 260 P~~Rpt~~e~ 269 (326)
T 2y0a_A 260 PKKRMTIQDS 269 (326)
T ss_dssp GGGSCCHHHH
T ss_pred hhhCCCHHHH
Confidence 9999999886
No 290
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.21 E-value=5.8e-05 Score=74.93 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=47.2
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||||++++|+++|+.|........ .....+... ... .+++. .+...|++.+|++|
T Consensus 292 ~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~-------~~~~~~~~~--~~~----~~~~~---~li~~~l~~dP~~R 355 (413)
T 3dzo_A 292 TLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG-------GSEWIFRSC--KNI----PQPVR---ALLEGFLRYPKEDR 355 (413)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS-------CSGGGGSSC--CCC----CHHHH---HHHHHHTCSSGGGS
T ss_pred cCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh-------hHHHHHhhc--ccC----CHHHH---HHHHHHccCChhhC
Confidence 345679999999999999999999975322110 000111100 111 23444 78899999999999
Q ss_pred CCcccCC
Q 010041 513 PTMQRIS 519 (519)
Q Consensus 513 P~m~~v~ 519 (519)
|++.|++
T Consensus 356 pt~~~~l 362 (413)
T 3dzo_A 356 LLPLQAM 362 (413)
T ss_dssp CCHHHHT
T ss_pred cCHHHHH
Confidence 9988763
No 291
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=97.20 E-value=7.6e-05 Score=73.22 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.8
Q ss_pred eeccccccccchhhhhcccccCCCCcc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
...+.+.|+||||++++|+++|+.|..
T Consensus 233 ~~~~~~~DiwSlG~il~elltg~~pf~ 259 (382)
T 2vx3_A 233 MPYDLAIDMWSLGCILVEMHTGEPLFS 259 (382)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 346679999999999999999999975
No 292
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=97.20 E-value=6.7e-05 Score=74.60 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=47.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh---hHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ---KIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||+|++++|+++|+.|..... ......+.+........+. ...++ +..+...|++.+|+
T Consensus 320 ~~~~~~DiwslG~il~~lltg~~pf~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~li~~~L~~dP~ 389 (419)
T 3i6u_A 320 GYNRAVDCWSLGVILFICLSGYPPFSEHR-------TQVSLKDQITSGKYNFIPEVWAEVSEK---ALDLVKKLLVVDPK 389 (419)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSSCSSCCCS-------SSCCHHHHHHTTCCCCCHHHHTTSCHH---HHHHHHHHSCSSTT
T ss_pred CCCchhhhHhHHHHHHHHHHCCCCCCCCc-------chHHHHHHHhcCCCCCCchhhcccCHH---HHHHHHHHccCChh
Confidence 34568999999999999999999975311 1111112221111111111 11223 34889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.|+
T Consensus 390 ~Rps~~e~ 397 (419)
T 3i6u_A 390 ARFTTEEA 397 (419)
T ss_dssp TSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 293
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=97.20 E-value=7.2e-05 Score=71.84 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=46.7
Q ss_pred eccccccccchhhhhcccccCCCCccccccccc---------CCCCCcc-hhhhh-hhccCCCCChh---HHHHHHHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSS---------SSGPKIM-LINVL-DQRLSPPVNQK---IVQDIILVST 499 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~---------~~~~~~~-~~~~~-d~~~~~~~~~~---~~~~~~~~~~ 499 (519)
..+.++|+||||++++|+++|+.|......... ...+... ....+ .....+..+.. .......+.+
T Consensus 211 ~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (336)
T 3g2f_A 211 SALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKE 290 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHH
Confidence 455689999999999999999877532111100 0000000 00001 11111111110 0011123458
Q ss_pred HHHHhcCCCCCCCCCcccC
Q 010041 500 IAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 500 la~~C~~~~p~~RP~m~~v 518 (519)
+...|++.+|++|||++||
T Consensus 291 li~~cl~~dP~~Rps~~e~ 309 (336)
T 3g2f_A 291 TIEDCWDQDAEARLTAQXA 309 (336)
T ss_dssp HHHHHSCSSGGGSCCHHHH
T ss_pred HHHHHhcCChhhCcchHHH
Confidence 8999999999999999986
No 294
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.0002 Score=62.17 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=7.5
Q ss_pred cccCCCCCEEEccCCc
Q 010041 409 IGNCSELRNLTLNHNS 424 (519)
Q Consensus 409 l~~l~~L~~L~l~~n~ 424 (519)
+..-+.|+.|+++.|.
T Consensus 153 L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 153 IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHCSSCCEEECCCCC
T ss_pred HHhCCCcCeEeccCCC
Confidence 3334455555555443
No 295
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=97.20 E-value=4.4e-05 Score=73.51 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=45.6
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
....+.+.|+||+|++++|+++|+.|................. .........+......+++. .+...|++.+|++
T Consensus 203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~ 278 (336)
T 3fhr_A 203 PEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRI-RLGQYGFPNPEWSEVSEDAK---QLIRLLLKTDPTE 278 (336)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------CCCTTTSTTCCHHHH---HHHHHHSCSSGGG
T ss_pred CCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhh-hccccccCchhhccCCHHHH---HHHHHHCCCChhH
Confidence 3455678999999999999999999975322110000000000 00000111111112233444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 279 Rpt~~el 285 (336)
T 3fhr_A 279 RLTITQF 285 (336)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 296
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=97.19 E-value=5.4e-05 Score=73.80 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=45.8
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh---hHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ---KIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.++|+||||++++|+++|+.|...... ......+.........+ ....+ +..+...|++.+|++
T Consensus 282 ~~~~~Di~slG~il~ell~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~---~~~li~~~L~~dP~~ 350 (365)
T 2y7j_A 282 YGKEVDLWACGVILFTLLAGSPPFWHRRQ--------ILMLRMIMEGQYQFSSPEWDDRSST---VKDLISRLLQVDPEA 350 (365)
T ss_dssp BCTTHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCHHHHSSSCHH---HHHHHHHHSCSSTTT
T ss_pred CCchhhHHhHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHhCCCCCCCcccccCCHH---HHHHHHHHcCCChhH
Confidence 56789999999999999999999752110 00111111111100000 11123 348899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
||++.||
T Consensus 351 Rps~~el 357 (365)
T 2y7j_A 351 RLTAEQA 357 (365)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 297
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=97.19 E-value=0.00011 Score=71.66 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=23.2
Q ss_pred eeccccccccchhhhhcccccCCCCcc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
...+.+.|+||||++++|+++|+.|..
T Consensus 210 ~~~~~~~Di~slG~il~el~~g~~pf~ 236 (373)
T 1q8y_A 210 APWGCGADIWSTACLIFELITGDFLFE 236 (373)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 345678999999999999999999975
No 298
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=97.18 E-value=8.3e-05 Score=71.35 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 210 ~~~~~~Di~slG~il~el~~g~~pf~ 235 (339)
T 1z57_A 210 GWSQPCDVWSIGCILIEYYLGFTVFP 235 (339)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 299
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=97.18 E-value=6.1e-05 Score=71.11 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=45.8
Q ss_pred ccccccccchhhhhcccccCCCCccccccccc-----CCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSS-----SSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p 509 (519)
.+.+.|+||+|++++|+++|+.|......... ............+..... ...+++. .+..+|++.+|
T Consensus 204 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~li~~~l~~dp 276 (303)
T 2vwi_A 204 YDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLK----KYGKSFR---KMISLCLQKDP 276 (303)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCC----CCCHHHH---HHHHHHCCSSG
T ss_pred CCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhh----hhhHHHH---HHHHHHccCCh
Confidence 46789999999999999999999753221100 000000000000111111 1123343 78999999999
Q ss_pred CCCCCcccC
Q 010041 510 KSRPTMQRI 518 (519)
Q Consensus 510 ~~RP~m~~v 518 (519)
++||++.||
T Consensus 277 ~~Rps~~~l 285 (303)
T 2vwi_A 277 EKRPTAAEL 285 (303)
T ss_dssp GGSCCHHHH
T ss_pred hhCcCHHHH
Confidence 999999886
No 300
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=97.17 E-value=2.8e-05 Score=72.76 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=46.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh----hHHHHHHHHHHHHHHhcCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ----KIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~la~~C~~~~p 509 (519)
..+.+.|+||||++++|+++|+.|...... ......+... ....+. ...+++ .++...|++.+|
T Consensus 187 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~li~~~l~~dp 254 (283)
T 3bhy_A 187 PLGLEADMWSIGVITYILLSGASPFLGETK--------QETLTNISAV-NYDFDEEYFSNTSELA---KDFIRRLLVKDP 254 (283)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTCCSSH--------HHHHHHHHTT-CCCCCHHHHTTCCHHH---HHHHHTTSCSSG
T ss_pred CCCcchhhhhHHHHHHHHHHCCCCCCCcch--------HHHHHHhHhc-ccCCcchhcccCCHHH---HHHHHHHccCCH
Confidence 456789999999999999999999753110 0000001000 000111 111233 388999999999
Q ss_pred CCCCCcccC
Q 010041 510 KSRPTMQRI 518 (519)
Q Consensus 510 ~~RP~m~~v 518 (519)
++||++.|+
T Consensus 255 ~~Rps~~~~ 263 (283)
T 3bhy_A 255 KRRMTIAQS 263 (283)
T ss_dssp GGSCCHHHH
T ss_pred hHCcCHHHH
Confidence 999999886
No 301
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=97.16 E-value=4e-05 Score=74.64 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.++|+||+|++++|+++|+.|...... ......+.......+. .....+++. .+...|++.+|++
T Consensus 206 ~~~~~~DiwslG~il~~ll~g~~Pf~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~ 275 (362)
T 2bdw_A 206 PYSKPVDIWACGVILYILLVGYPPFWDEDQ-------HRLYAQIKAGAYDYPSPEWDTVTPEAK---SLIDSMLTVNPKK 275 (362)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHTCCCCCTTGGGGSCHHHH---HHHHHHSCSSGGG
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHhCCCCCCcccccCCCHHHH---HHHHHHcCCChhh
Confidence 456789999999999999999999752110 0001111111111110 011223444 7899999999999
Q ss_pred CCCcccCC
Q 010041 512 RPTMQRIS 519 (519)
Q Consensus 512 RP~m~~v~ 519 (519)
||++.|+.
T Consensus 276 R~t~~e~l 283 (362)
T 2bdw_A 276 RITADQAL 283 (362)
T ss_dssp SCCHHHHT
T ss_pred CcCHHHHh
Confidence 99998863
No 302
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=97.15 E-value=4.3e-05 Score=73.73 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=48.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhh-hccCC--CCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLD-QRLSP--PVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d-~~~~~--~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.++|+||+|++++|+++|+.|...... .....+...+. ..... .......+++. .+...|++.+|+
T Consensus 196 ~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~ 267 (342)
T 2qr7_A 196 GYDAACDIWSLGVLLYTMLTGYTPFANGPD-----DTPEEILARIGSGKFSLSGGYWNSVSDTAK---DLVSKMLHVDPH 267 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSCSSTT-----SCHHHHHHHHHHCCCCCCSTTTTTSCHHHH---HHHHHHTCSSTT
T ss_pred CCCCccCeeeHhHHHHHHhcCCCCCCCCCc-----CCHHHHHHHHccCCcccCccccccCCHHHH---HHHHHHCCCChh
Confidence 356789999999999999999999752110 00001111111 11111 01112234444 789999999999
Q ss_pred CCCCcccCC
Q 010041 511 SRPTMQRIS 519 (519)
Q Consensus 511 ~RP~m~~v~ 519 (519)
+||++.||.
T Consensus 268 ~R~t~~~il 276 (342)
T 2qr7_A 268 QRLTAALVL 276 (342)
T ss_dssp TSCCHHHHT
T ss_pred HCcCHHHHh
Confidence 999998863
No 303
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=97.15 E-value=8.7e-05 Score=71.78 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=23.3
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 215 ~~~~~~Di~slG~il~el~~g~~pf~ 240 (355)
T 2eu9_A 215 GWAQPCDVWSIGCILFEYYRGFTLFQ 240 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCCccchHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 304
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=97.14 E-value=3.8e-05 Score=74.48 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=47.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh---hhccCCC---C--ChhHHHHHHHHHHHHHHhc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL---DQRLSPP---V--NQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~---d~~~~~~---~--~~~~~~~~~~~~~la~~C~ 505 (519)
..+.+.|+||||++++|+++|+.|....... ........ ....... . .....+++. ++...|+
T Consensus 244 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l 314 (352)
T 2jii_A 244 GPSRRSDLQSLGYCMLKWLYGFLPWTNCLPN------TEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQ---KYLKVVM 314 (352)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC------HHHHHHHHHHHHHSCCCEECTTSCEECCCHHHH---HHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCcccCCcC------HHHHHHHHHhccCChhhhhhhccccCCCcHHHH---HHHHHHH
Confidence 4567899999999999999999998642200 00011110 1111000 0 001123444 8899999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++||++.||
T Consensus 315 ~~dp~~Rps~~~l 327 (352)
T 2jii_A 315 ALTYEEKPPYAML 327 (352)
T ss_dssp TCCTTCCCCHHHH
T ss_pred hCChhhCCCHHHH
Confidence 9999999999886
No 305
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=97.14 E-value=5.6e-05 Score=72.29 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=46.3
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... ....................+++. .+...|++.+|++||
T Consensus 210 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~Rp 279 (326)
T 2x7f_A 210 TYDFKSDLWSLGITAIEMAEGAPPLCDMHPM-------RALFLIPRNPAPRLKSKKWSKKFQ---SFIESCLVKNHSQRP 279 (326)
T ss_dssp -CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSCCCCCSCSCSCHHHH---HHHHHHCCSSGGGSC
T ss_pred CCCccchHHHHHHHHHHHHhCCCCCCCCcHH-------HHHHHhhcCccccCCccccCHHHH---HHHHHHhccChhhCC
Confidence 4567899999999999999999997532110 000011111111111111223444 788999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 280 s~~~l 284 (326)
T 2x7f_A 280 ATEQL 284 (326)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 306
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=97.14 E-value=7.4e-05 Score=70.64 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=46.1
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|...... ....+.+..... ..+....+++. .+...|++.+|++||++
T Consensus 191 ~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~i~~~~~-~~~~~~~~~l~---~li~~~l~~dp~~Rps~ 258 (305)
T 2wtk_C 191 GFKVDIWSAGVTLYNITTGLYPFEGDNI--------YKLFENIGKGSY-AIPGDCGPPLS---DLLKGMLEYEPAKRFSI 258 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSCCCSSH--------HHHHHHHHHCCC-CCCSSSCHHHH---HHHHHHTCSSTTTSCCH
T ss_pred cchhhHHHHHHHHHHHHhCCCCCCCchH--------HHHHHHHhcCCC-CCCCccCHHHH---HHHHHHccCChhhCCCH
Confidence 5689999999999999999999753110 011111111111 11112223444 78999999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.|+
T Consensus 259 ~~l 261 (305)
T 2wtk_C 259 RQI 261 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 307
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00028 Score=61.24 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCCCCCEEEccCCCCCcc----CCccccCCCCCCEEEccCCcCccc----CchhccCCCCCCEEeccCCc---CCCC---
Q 010041 147 SLRNLEVLDLGSNNLNGT----IPIEIGSVRNLETLSLDGNKLSGT----IPIEIESLRNLQWLDLSSNK---LSGT--- 212 (519)
Q Consensus 147 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~---l~~~--- 212 (519)
.-+.|+.|+|++|.+... +...+..-+.|++|+|++|.|+.. +...+..-+.|++|+|++|. +...
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 334455555555544321 112222334455555555555422 12233334456666665432 2211
Q ss_pred -CCcccCCcCccCeeeCCCCc
Q 010041 213 -IPKEIGSLRNLKELDLSSNK 232 (519)
Q Consensus 213 -~p~~l~~l~~L~~L~l~~n~ 232 (519)
+...+..-+.|++|+++.|.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhCCCcCeEeccCCC
Confidence 12233344556666665543
No 308
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=97.14 E-value=5.4e-05 Score=71.37 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=45.2
Q ss_pred eeeeecceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhc
Q 010041 426 NGKLAHTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 426 ~~~~~~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~ 505 (519)
++++......+.++|+||+|++++|+++ |..... .....+........++...+.......+..+|+
T Consensus 198 APE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L 264 (299)
T 4g31_A 198 SPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----------ERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDML 264 (299)
T ss_dssp CHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH----------HHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHT
T ss_pred CHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc----------HHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHc
Confidence 3333334456789999999999999996 532100 000011000011112221111122336889999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++|||+.|+
T Consensus 265 ~~dP~~Rps~~ei 277 (299)
T 4g31_A 265 SPSPMERPEAINI 277 (299)
T ss_dssp CSSGGGSCCHHHH
T ss_pred CCChhHCcCHHHH
Confidence 9999999999876
No 309
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=97.13 E-value=4.6e-05 Score=71.39 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=45.1
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh---hhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL---DQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.+.|+||+|++++|+++|+.|....... ...... ........ ....+++. .+...|++.+|++
T Consensus 202 ~~~~~Di~slG~il~~ll~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~---~li~~~L~~dP~~ 269 (285)
T 3is5_A 202 VTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--------EVQQKATYKEPNYAVEC-RPLTPQAV---DLLKQMLTKDPER 269 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCC---CCCCHHHH---HHHHHHTCSCTTT
T ss_pred CCcccCeehHHHHHHHHHhCCCCCCCCCHH--------HHHhhhccCCccccccc-CcCCHHHH---HHHHHHccCChhh
Confidence 456889999999999999999997531100 000000 00000000 00123333 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 270 Rps~~e~ 276 (285)
T 3is5_A 270 RPSAAQV 276 (285)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999986
No 310
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=97.13 E-value=6.5e-05 Score=71.22 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.6
Q ss_pred eeccccccccchhhhhcccccCCCCcc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
...+.+.|+||+|++++|+++|+.|..
T Consensus 194 ~~~~~~~DiwslG~il~~l~~g~~pf~ 220 (308)
T 3g33_A 194 STYATPVDMWSVGCIFAEMFRRKPLFC 220 (308)
T ss_dssp SCCCSTHHHHHHHHHHHHTTTSSCSCC
T ss_pred CCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence 345678999999999999999999974
No 311
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=97.13 E-value=9.4e-05 Score=70.51 Aligned_cols=80 Identities=10% Similarity=0.146 Sum_probs=47.8
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh---------------------hhccCC--CCChh
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL---------------------DQRLSP--PVNQK 489 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~---------------------d~~~~~--~~~~~ 489 (519)
...+.+.|+||||++++|+++|+.|......... ......... .+.... .....
T Consensus 198 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (319)
T 4euu_A 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR---NKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRG 274 (319)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGG---CHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccch---hHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchh
Confidence 3456789999999999999999999752211000 000000000 001111 11222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccC
Q 010041 490 IVQDIILVSTIAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 490 ~~~~~~~~~~la~~C~~~~p~~RP~m~~v 518 (519)
..+. +..+...|++.+|++|||++|+
T Consensus 275 ~~~~---l~~ll~~~L~~dP~~R~s~~el 300 (319)
T 4euu_A 275 LQVL---LTPVLANILEADQEKCWGFDQF 300 (319)
T ss_dssp HHHH---HHHHHHHHSCCCTTTSCCHHHH
T ss_pred HHHH---hHHHHHHhccCChhhhccHHHh
Confidence 2233 3488999999999999999886
No 312
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=97.12 E-value=9.2e-05 Score=70.94 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=46.3
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|.+.... ......+...... .+.....++. .+...|++.+|.+|||+
T Consensus 192 ~~~~DiwslG~il~ell~g~~pf~~~~~-------~~~~~~i~~~~~~--~p~~~s~~~~---~li~~~L~~dP~~R~t~ 259 (328)
T 3fe3_A 192 GPEVDVWSLGVILYTLVSGSLPFDGQNL-------KELRERVLRGKYR--IPFYMSTDCE---NLLKRFLVLNPIKRGTL 259 (328)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHCCSSTTTSCCH
T ss_pred CchhhhhhhHHHHHHHHhCCCCCCCCCH-------HHHHHHHHhCCCC--CCCCCCHHHH---HHHHHHCCCChhHCcCH
Confidence 3579999999999999999999753110 0001111111111 1112223444 78899999999999999
Q ss_pred ccCC
Q 010041 516 QRIS 519 (519)
Q Consensus 516 ~~v~ 519 (519)
.|+.
T Consensus 260 ~eil 263 (328)
T 3fe3_A 260 EQIM 263 (328)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9863
No 313
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=97.12 E-value=7.1e-05 Score=71.02 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 179 ~~~~~~Di~slG~il~~l~~g~~p~~ 204 (311)
T 4agu_A 179 QYGPPVDVWAIGCVFAELLSGVPLWP 204 (311)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 34678999999999999999999974
No 314
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=97.12 E-value=6.4e-05 Score=72.27 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=46.0
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|.+...... .. ..+.... ...+.....++. .+...|++.+|.+|||+
T Consensus 186 ~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--~~------~~i~~~~-~~~p~~~s~~~~---~li~~~L~~dP~~Rpt~ 253 (336)
T 3h4j_B 186 GPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--LF------KKVNSCV-YVMPDFLSPGAQ---SLIRRMIVADPMQRITI 253 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSBCSSSTT--CB------CCCCSSC-CCCCTTSCHHHH---HHHHTTSCSSGGGSCCH
T ss_pred CCccchhHHHHHHHHHHhCCCCCCCccHHH--HH------HHHHcCC-CCCcccCCHHHH---HHHHHHcCCChhHCcCH
Confidence 468999999999999999999975321100 00 0000000 011111223444 78999999999999999
Q ss_pred ccCC
Q 010041 516 QRIS 519 (519)
Q Consensus 516 ~~v~ 519 (519)
.|+.
T Consensus 254 ~eil 257 (336)
T 3h4j_B 254 QEIR 257 (336)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9863
No 315
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=97.12 E-value=4.6e-05 Score=72.79 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh----hHHHHHHHHHHHHHHhcCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ----KIVQDIILVSTIAFACLSSQ 508 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~la~~C~~~~ 508 (519)
...+.+.|+||+|++++|+++|+.|...... ......+..... ..+. ...+++ ..+...|++.+
T Consensus 193 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~i~~~~~-~~~~~~~~~~~~~~---~~li~~~l~~d 260 (321)
T 2a2a_A 193 EPLGLEADMWSIGVITYILLSGASPFLGDTK--------QETLANITSVSY-DFDEEFFSHTSELA---KDFIRKLLVKE 260 (321)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--------HHHHHHHHTTCC-CCCHHHHTTCCHHH---HHHHHTTSCSS
T ss_pred CCCCCccccHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHhccc-ccChhhhcccCHHH---HHHHHHHcCCC
Confidence 3456789999999999999999999752110 000011110000 0111 111233 38899999999
Q ss_pred CCCCCCcccC
Q 010041 509 PKSRPTMQRI 518 (519)
Q Consensus 509 p~~RP~m~~v 518 (519)
|++|||+.|+
T Consensus 261 p~~Rps~~e~ 270 (321)
T 2a2a_A 261 TRKRLTIQEA 270 (321)
T ss_dssp TTTSCCHHHH
T ss_pred hhhCcCHHHH
Confidence 9999999886
No 316
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=97.11 E-value=5.7e-05 Score=71.47 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=46.8
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhcc--CCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRL--SPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||+|++++|+++|+.|...... ....+.+ .... ..+......+++. .+...|++.+|+
T Consensus 183 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~ 251 (304)
T 2jam_A 183 PYSKAVDCWSIGVITYILLCGYPPFYEETE--------SKLFEKIKEGYYEFESPFWDDISESAK---DFICHLLEKDPN 251 (304)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHCCCCCCTTTTTTSCHHHH---HHHHHHHCSSTT
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHcCCCCCCccccccCCHHHH---HHHHHHcCCChh
Confidence 346789999999999999999999752110 0111111 1110 1111112223444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.|+
T Consensus 252 ~Rps~~~~ 259 (304)
T 2jam_A 252 ERYTCEKA 259 (304)
T ss_dssp TSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999876
No 317
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=97.10 E-value=6.4e-05 Score=69.92 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=46.0
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|..... .....+.+..... ..+....+++. .+...|++.+|++|||+
T Consensus 189 ~~~~Di~slG~~l~~l~~g~~p~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~l~---~li~~~l~~~p~~Rps~ 256 (276)
T 2h6d_A 189 GPEVDIWSCGVILYALLCGTLPFDDEH--------VPTLFKKIRGGVF-YIPEYLNRSVA---TLLMHMLQVDPLKRATI 256 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSCCSS--------HHHHHHHHHHCCC-CCCTTSCHHHH---HHHHHHTCSSGGGSCCH
T ss_pred CccchHHHHHHHHHHHHhCCCCCCCCc--------HHHHHHHhhcCcc-cCchhcCHHHH---HHHHHHccCChhhCCCH
Confidence 468999999999999999999975211 0011111111111 11112223443 78999999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.||
T Consensus 257 ~~~ 259 (276)
T 2h6d_A 257 KDI 259 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 318
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=97.10 E-value=6.8e-05 Score=70.65 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=47.6
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC--CCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP--PVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||+|++++|+++|+.|....... ............. +......+++. .+...|++.+|++
T Consensus 205 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp~~ 274 (298)
T 1phk_A 205 GYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM-------LMLRMIMSGNYQFGSPEWDDYSDTVK---DLVSRFLVVQPQK 274 (298)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHTCCCCCTTTGGGSCHHHH---HHHHHHCCSSGGG
T ss_pred cCCcccccHhHHHHHHHHHHCCCCCcCccHH-------HHHHHHhcCCcccCcccccccCHHHH---HHHHHHccCCccc
Confidence 3467899999999999999999997521100 0011111111111 11112223444 8899999999999
Q ss_pred CCCcccCC
Q 010041 512 RPTMQRIS 519 (519)
Q Consensus 512 RP~m~~v~ 519 (519)
||++.|++
T Consensus 275 Rps~~~ll 282 (298)
T 1phk_A 275 RYTAEEAL 282 (298)
T ss_dssp SCCHHHHT
T ss_pred CCCHHHHH
Confidence 99998864
No 319
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=97.10 E-value=9.4e-05 Score=73.02 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=48.6
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.++|+||||++++|+++|+.|........ .. ......+.......+ ......+++. .+...|++.+|+
T Consensus 238 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~ 311 (400)
T 1nxk_A 238 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA--IS-PGMKTRIRMGQYEFPNPEWSEVSEEVK---MLIRNLLKTEPT 311 (400)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCS--SC-CSHHHHHHHTCCCCCTTTTTTSCHHHH---HHHHTTSCSSGG
T ss_pred CCCCCcccHHHHHHHHHHHHhCCCCCCCCcccc--cc-HHHHHHHHcCcccCCCcccccCCHHHH---HHHHHHCCCChh
Confidence 345678999999999999999999975322110 00 001111111111111 0011223444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.||
T Consensus 312 ~Rpt~~ei 319 (400)
T 1nxk_A 312 QRMTITEF 319 (400)
T ss_dssp GSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 320
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=97.09 E-value=8.7e-05 Score=71.34 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=47.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|+.|....... ............ .+....+++. .+...|++.+|++||
T Consensus 217 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~---~li~~~l~~dp~~Rp 284 (335)
T 2owb_A 217 GHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-------ETYLRIKKNEYS--IPKHINPVAA---SLIQKMLQTDPTARP 284 (335)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-------HHHHHHHHTCCC--CCTTSCHHHH---HHHHHHTCSSGGGSC
T ss_pred CCCchhhHHHHHHHHHHHHHCcCCCCCCCHH-------HHHHHHhcCCCC--CCccCCHHHH---HHHHHHccCChhHCc
Confidence 3456899999999999999999997531100 001111111111 1111223343 789999999999999
Q ss_pred CcccCC
Q 010041 514 TMQRIS 519 (519)
Q Consensus 514 ~m~~v~ 519 (519)
++.|++
T Consensus 285 s~~ell 290 (335)
T 2owb_A 285 TINELL 290 (335)
T ss_dssp CGGGGG
T ss_pred CHHHHh
Confidence 999874
No 321
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=97.09 E-value=6e-05 Score=75.45 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=46.9
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.++|+||+|++++|+++|+.|..... .......+ ......+ ......+++. .+...|++.+|+
T Consensus 189 ~~~~~~DIwSlGvilyell~G~~Pf~~~~--------~~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~ 257 (444)
T 3soa_A 189 PYGKPVDLWACGVILYILLVGYPPFWDED--------QHRLYQQIKAGAYDFPSPEWDTVTPEAK---DLINKMLTINPS 257 (444)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSCCCSS--------HHHHHHHHHHTCCCCCTTTTTTSCHHHH---HHHHHHSCSSTT
T ss_pred CCCCccccHHHHHHHHHHHhCCCCCCCcc--------HHHHHHHHHhCCCCCCccccccCCHHHH---HHHHHHcCCChh
Confidence 45678999999999999999999974211 00111111 1111111 0011223444 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.|+
T Consensus 258 ~Rpta~e~ 265 (444)
T 3soa_A 258 KRITAAEA 265 (444)
T ss_dssp TSCCHHHH
T ss_pred HCCCHHHH
Confidence 99999886
No 322
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=97.08 E-value=8.2e-05 Score=69.59 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=47.3
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|....... ........... ..+....+++. .+...|++.+|++||
T Consensus 188 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~---~li~~~l~~~p~~Rp 255 (284)
T 2vgo_A 188 THDEKVDLWCAGVLCYEFLVGMPPFDSPSHT-------ETHRRIVNVDL--KFPPFLSDGSK---DLISKLLRYHPPQRL 255 (284)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-------HHHHHHHTTCC--CCCTTSCHHHH---HHHHHHSCSSGGGSC
T ss_pred CCCcccchhhHHHHHHHHHHCCCCCCCCCHh-------HHHHHHhcccc--CCCCcCCHHHH---HHHHHHhhcCHhhCC
Confidence 4567899999999999999999997531110 00111111111 11122223444 789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 256 s~~~l 260 (284)
T 2vgo_A 256 PLKGV 260 (284)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 323
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=97.08 E-value=8.1e-05 Score=71.90 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=46.1
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
.+.++|+||+|++++|+++|+.|...... ......+...... .+.....++. .+...|++.+|++|||
T Consensus 187 ~~~~~DiwSlG~il~ell~g~~Pf~~~~~-------~~~~~~i~~~~~~--~p~~~s~~~~---~li~~~L~~dP~~Rps 254 (347)
T 3zgw_A 187 LGSEADVWSMGILLYVLMCGFLPFDDDNV-------MALYKKIMRGKYD--VPKWLSPSSI---LLLQQMLQVDPKKRIS 254 (347)
T ss_dssp -CCHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHTCCC--CCTTCCHHHH---HHHHHHTCSSGGGSCC
T ss_pred CCcHhHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHcCCCC--CCCCCCHHHH---HHHHHHcccCHhHCcC
Confidence 35689999999999999999999753110 0001111111111 1121223443 7899999999999999
Q ss_pred cccC
Q 010041 515 MQRI 518 (519)
Q Consensus 515 m~~v 518 (519)
+.||
T Consensus 255 ~~ei 258 (347)
T 3zgw_A 255 MKNL 258 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 324
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=97.08 E-value=9.7e-05 Score=71.71 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.8
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||||++++|+++|+.|..
T Consensus 209 ~~~~~Di~slG~il~ell~g~~pf~ 233 (360)
T 3e3p_A 209 YTTAVDIWSVGCIFAEMMLGEPIFR 233 (360)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCcC
Confidence 5678999999999999999999975
No 325
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=97.07 E-value=8.8e-05 Score=71.15 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 201 ~~~~~~Di~slG~il~~l~~g~~pf~ 226 (331)
T 4aaa_A 201 KYGKAVDVWAIGCLVTEMFMGEPLFP 226 (331)
T ss_dssp TCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CcchHHHHHHHHHHHHHHHhCCCCCC
Confidence 34678999999999999999999975
No 326
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=97.06 E-value=4.5e-05 Score=73.86 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=47.2
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccC--CCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLS--PPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||||++++|+++|+.|....... ............. .+......+++. .+...|++.+|++
T Consensus 226 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dP~~ 296 (349)
T 2w4o_A 226 AYGPEVDMWSVGIITYILLCGFEPFYDERGD------QFMFRRILNCEYYFISPWWDEVSLNAK---DLVRKLIVLDPKK 296 (349)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH------HHHHHHHHTTCCCCCTTTTTTSCHHHH---HHHHTTSCSSGGG
T ss_pred CCCcccchHHHHHHHHHHHhCCCCCCCCccc------HHHHHHHHhCCCccCCchhhhCCHHHH---HHHHHHccCChhh
Confidence 4567899999999999999999997421100 0001111111111 011111223444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 297 Rpt~~e~ 303 (349)
T 2w4o_A 297 RLTTFQA 303 (349)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999875
No 327
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=97.06 E-value=0.00013 Score=71.65 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 213 ~~~~~~DiwslG~il~el~~g~~pf~ 238 (389)
T 3gni_B 213 GYDAKSDIYSVGITACELANGHVPFK 238 (389)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred CCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence 45678999999999999999999975
No 328
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=97.05 E-value=5.6e-05 Score=72.18 Aligned_cols=65 Identities=22% Similarity=0.445 Sum_probs=45.0
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||||++++|+++|+.|....... ...... .+....+++. .+..+|++.+|++||++
T Consensus 227 ~~~~Di~slG~il~el~~g~~pf~~~~~~-------------~~~~~~--~~~~~~~~~~---~li~~~l~~dp~~Rps~ 288 (320)
T 3a99_A 227 GRSAAVWSLGILLYDMVCGDIPFEHDEEI-------------IRGQVF--FRQRVSSECQ---HLIRWCLALRPSDRPTF 288 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCCSHHHH-------------HHCCCC--CSSCCCHHHH---HHHHHHTCSSGGGSCCH
T ss_pred CccchHHhHHHHHHHHHHCCCCCCChhhh-------------hccccc--ccccCCHHHH---HHHHHHccCChhhCcCH
Confidence 46789999999999999999997532211 111100 0111223444 78999999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.||
T Consensus 289 ~~l 291 (320)
T 3a99_A 289 EEI 291 (320)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 329
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=97.05 E-value=9.6e-05 Score=71.89 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=44.7
Q ss_pred ccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010041 437 EKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQ 516 (519)
Q Consensus 437 ~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~ 516 (519)
.+.|+||+|++++|+++|+.|....... .................+......+++. .+...|++.+|++|||+.
T Consensus 197 ~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~~Rps~~ 270 (361)
T 3uc3_A 197 KIADVWSCGVTLYVMLVGAYPFEDPEEP---RDYRKTIQRILSVKYSIPDDIRISPECC---HLISRIFVADPATRISIP 270 (361)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCC----C---CCHHHHHHHHHTTCCCCCTTSCCCHHHH---HHHHHHSCSCTTTSCCHH
T ss_pred CeeeeehhHHHHHHHHhCCCCCCCCccH---HHHHHHHHHHhcCCCCCCCcCCCCHHHH---HHHHHHccCChhHCcCHH
Confidence 3489999999999999999997632110 0000001111111111111111223444 889999999999999998
Q ss_pred cC
Q 010041 517 RI 518 (519)
Q Consensus 517 ~v 518 (519)
|+
T Consensus 271 el 272 (361)
T 3uc3_A 271 EI 272 (361)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 330
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=97.04 E-value=8.1e-05 Score=71.59 Aligned_cols=65 Identities=17% Similarity=0.437 Sum_probs=45.5
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||||++++|+++|+.|....... .......+ ....+++. .+...|++.+|++|||+
T Consensus 208 ~~~~DiwslG~il~el~~g~~pf~~~~~~-------------~~~~~~~~--~~~~~~l~---~li~~~L~~dP~~Rps~ 269 (335)
T 3dls_A 208 GPELEMWSLGVTLYTLVFEENPFCELEET-------------VEAAIHPP--YLVSKELM---SLVSGLLQPVPERRTTL 269 (335)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------------TTTCCCCS--SCCCHHHH---HHHHHHTCSSGGGSCCH
T ss_pred CCcccchhHHHHHHHHHhCCCchhhHHHH-------------HhhccCCC--cccCHHHH---HHHHHHccCChhhCcCH
Confidence 56789999999999999999998643211 11111111 11123444 78899999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.||
T Consensus 270 ~el 272 (335)
T 3dls_A 270 EKL 272 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 331
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=97.04 E-value=7.9e-05 Score=69.84 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=46.2
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCCCC--hhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPPVN--QKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~--~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.+.|+||+|++++|+++|+.|...... ......+ ........+ ....+++. .+...|++.+|++
T Consensus 199 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~ 267 (287)
T 2wei_A 199 YDEKCDVWSAGVILYILLSGTPPFYGKNE--------YDILKRVETGKYAFDLPQWRTISDDAK---DLIRKMLTFHPSL 267 (287)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCSGGGTTSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCchhhHhHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCchhhhhcCHHHH---HHHHHHcccChhh
Confidence 45689999999999999999999753111 0111111 111111100 11223443 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 268 Rps~~el 274 (287)
T 2wei_A 268 RITATQC 274 (287)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 332
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=97.03 E-value=0.00016 Score=68.64 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 196 ~~~~~~DiwslG~il~~ll~g~~pf~ 221 (311)
T 3niz_A 196 KYSTSVDIWSIGCIFAEMITGKPLFP 221 (311)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCchHHhHHHHHHHHHHHhCCCCCC
Confidence 34678999999999999999999975
No 333
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=97.02 E-value=6.8e-05 Score=71.20 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=44.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC--CCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP--PVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||||++++|+++|+.|....... .....+...... .......+++. .+...|++.+|++
T Consensus 211 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~ 279 (309)
T 2h34_A 211 HATYRADIYALTCVLYECLTGSPPYQGDQLS--------VMGAHINQAIPRPSTVRPGIPVAFD---AVIARGMAKNPED 279 (309)
T ss_dssp ---CCCHHHHHHHHHHHHHHSSCSSCSCHHH--------HHHHHHHSCCCCGGGTSTTCCTHHH---HHHHHHTCSSGGG
T ss_pred CCCchHhHHHHHHHHHHHHHCCCCCCCchHH--------HHHHHhccCCCCccccCCCCCHHHH---HHHHHhccCCHHH
Confidence 4466899999999999999999997532110 011111111110 01111223343 7899999999999
Q ss_pred CC-CcccC
Q 010041 512 RP-TMQRI 518 (519)
Q Consensus 512 RP-~m~~v 518 (519)
|| +++|+
T Consensus 280 Rp~s~~~l 287 (309)
T 2h34_A 280 RYVTCGDL 287 (309)
T ss_dssp SCSSHHHH
T ss_pred HHHhHHHH
Confidence 99 88765
No 334
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=97.02 E-value=4.9e-05 Score=71.02 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=46.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||||++++|+++|..|....... .....+.......+ .++. .+...|++.+|++||
T Consensus 197 ~~~~~~Di~slG~il~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~---~li~~~l~~dp~~Rp 260 (284)
T 2a19_B 197 DYGKEVDLYALGLILAELLHVCDTAFETSKF---------FTDLRDGIISDIFD----KKEK---TLLQKLLSKKPEDRP 260 (284)
T ss_dssp CCCTHHHHHHHHHHHHHHHSCCSSHHHHHHH---------HHHHHTTCCCTTSC----HHHH---HHHHHHTCSSGGGSC
T ss_pred CCcchhhhHHHHHHHHHHHhcCCcchhHHHH---------HHHhhcccccccCC----HHHH---HHHHHHccCChhhCc
Confidence 4567899999999999999999886421110 01111111222222 3333 788999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 261 s~~e~ 265 (284)
T 2a19_B 261 NTSEI 265 (284)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 335
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=97.02 E-value=7.4e-05 Score=72.38 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=46.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC--hhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN--QKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.++|+||+|++++|+++|+.|..... ................. ....+++. .+...|++.+|++
T Consensus 209 ~~~~~~DiwslG~il~~ll~g~~pf~~~~--------~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~~ 277 (351)
T 3c0i_A 209 PYGKPVDVWGCGVILFILLSGCLPFYGTK--------ERLFEGIIKGKYKMNPRQWSHISESAK---DLVRRMLMLDPAE 277 (351)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCSSH--------HHHHHHHHHTCCCCCHHHHTTSCHHHH---HHHHHHTCSSTTT
T ss_pred CCCchHhhHHHHHHHHHHHHCCCCCCCcH--------HHHHHHHHcCCCCCCccccccCCHHHH---HHHHHHCCCChhH
Confidence 45678999999999999999999975211 00011111111111000 01123333 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 278 R~s~~e~ 284 (351)
T 3c0i_A 278 RITVYEA 284 (351)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 336
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=97.00 E-value=7e-05 Score=70.21 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=43.7
Q ss_pred eccccccccchhhhhcccccCCCCc-ccccccccCCCCCcchhhhhhh--ccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPG-ELLSSLSSSSGPKIMLINVLDQ--RLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~-~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.+.|+||||++++|+++|..|. .... .......... ...... .+++. ++...|++.+|+
T Consensus 194 ~~~~~~DiwslG~il~el~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~----~~~l~---~li~~~l~~dp~ 258 (289)
T 4fvq_A 194 NLNLATDKWSFGTTLWEICSGGDKPLSALD--------SQRKLQFYEDRHQLPAPK----AAELA---NLINNCMDYEPD 258 (289)
T ss_dssp GCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--------HHHHHHHHHTTCCCCCCS----SCTTH---HHHHHHSCSSGG
T ss_pred CCCchhHHHHHHHHHHHHHcCCCCCccccc--------hHHHHHHhhccCCCCCCC----CHHHH---HHHHHHcCCChh
Confidence 4567899999999999999965543 2111 0001111111 111111 12333 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.||
T Consensus 259 ~Rps~~~l 266 (289)
T 4fvq_A 259 HRPSFRAI 266 (289)
T ss_dssp GSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 337
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=96.99 E-value=0.00011 Score=73.44 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=47.7
Q ss_pred eeccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhcc-----CCCCChhHHHHHHHHHHHHHHhcC
Q 010041 433 MVVTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRL-----SPPVNQKIVQDIILVSTIAFACLS 506 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~~~~~~~la~~C~~ 506 (519)
...+.++|+||||++++|+++ |+.|....... ....+.... ....+....+++. .+...|++
T Consensus 214 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~---~li~~~L~ 281 (434)
T 2rio_A 214 RRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR---------ESNIIRGIFSLDEMKCLHDRSLIAEAT---DLISQMID 281 (434)
T ss_dssp CCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH---------HHHHHHTCCCCCCCTTCCCHHHHHHHH---HHHHHHTC
T ss_pred cCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh---------HHHHhcCCCCcccccccccccchHHHH---HHHHHHhh
Confidence 345678999999999999998 99997521100 001111111 1111222333444 88999999
Q ss_pred CCCCCCCCcccC
Q 010041 507 SQPKSRPTMQRI 518 (519)
Q Consensus 507 ~~p~~RP~m~~v 518 (519)
.+|++|||+.||
T Consensus 282 ~dP~~Rps~~ei 293 (434)
T 2rio_A 282 HDPLKRPTAMKV 293 (434)
T ss_dssp SSGGGSCCHHHH
T ss_pred CChhhCCCHHHH
Confidence 999999999886
No 338
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=96.98 E-value=0.00017 Score=68.50 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=47.3
Q ss_pred eccccccccchhhhhcccccCCCCccccccccc-CCCCC------cchhhhhhhccCCCCChh----HHHHHHHHHHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSS-SSGPK------IMLINVLDQRLSPPVNQK----IVQDIILVSTIAF 502 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~-~~~~~------~~~~~~~d~~~~~~~~~~----~~~~~~~~~~la~ 502 (519)
..+.+.|+||+|++++|+++|+.|......... ..... ..+.+.+..... ..+.. ..++ +..+..
T Consensus 202 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~---~~~li~ 277 (316)
T 2ac3_A 202 IYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY-EFPDKDWAHISCA---AKDLIS 277 (316)
T ss_dssp HHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC-CCCHHHHTTSCHH---HHHHHH
T ss_pred CCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc-ccCchhcccCCHH---HHHHHH
Confidence 356789999999999999999999753211000 00000 001111111111 11111 1123 348899
Q ss_pred HhcCCCCCCCCCcccC
Q 010041 503 ACLSSQPKSRPTMQRI 518 (519)
Q Consensus 503 ~C~~~~p~~RP~m~~v 518 (519)
+|++.+|++|||+.||
T Consensus 278 ~~L~~dP~~Rps~~e~ 293 (316)
T 2ac3_A 278 KLLVRDAKQRLSAAQV 293 (316)
T ss_dssp HHSCSSTTTSCCHHHH
T ss_pred HHhhCChhhCCCHHHH
Confidence 9999999999999886
No 339
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=96.97 E-value=0.00019 Score=70.52 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||||++++|+++|+.|..
T Consensus 269 ~~~~~~DiwslG~il~elltg~~pf~ 294 (397)
T 1wak_A 269 GYNTPADIWSTACMAFELATGDYLFE 294 (397)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcHHHHHHHHHHHHHHhhCCCCCC
Confidence 45678999999999999999999975
No 340
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=96.96 E-value=5.4e-05 Score=74.34 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=47.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhc--cCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQR--LSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.++|+||+|++++|+++|+.|....... .....+.... ..........+++. .+...|++.+|+
T Consensus 225 ~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~-------~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dP~ 294 (387)
T 1kob_A 225 EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL-------ETLQNVKRCDWEFDEDAFSSVSPEAK---DFIKNLLQKEPR 294 (387)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-------HHHHHHHHCCCCCCSSTTTTSCHHHH---HHHHTTSCSSGG
T ss_pred CCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH-------HHHHHHHhCCCCCCccccccCCHHHH---HHHHHHcCCChh
Confidence 34567899999999999999999997531100 0000111100 11111111223444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+|||+.|+
T Consensus 295 ~Rpt~~el 302 (387)
T 1kob_A 295 KRLTVHDA 302 (387)
T ss_dssp GSCCHHHH
T ss_pred HCcCHHHH
Confidence 99999886
No 341
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=96.94 E-value=6.9e-05 Score=73.22 Aligned_cols=76 Identities=22% Similarity=0.150 Sum_probs=47.8
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||||++++|+++|+.|...... ...+..++......+ ......+++. .+...|++.+|+
T Consensus 263 ~~~~~~~DiwslG~il~elltg~~pf~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~---~li~~~L~~dp~ 332 (373)
T 2x4f_A 263 DFVSFPTDMWSVGVIAYMLLSGLSPFLGDND-------AETLNNILACRWDLEDEEFQDISEEAK---EFISKLLIKEKS 332 (373)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH-------HHHHHHHHHTCCCSCSGGGTTSCHHHH---HHHHTTSCSSGG
T ss_pred CCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-------HHHHHHHHhccCCCChhhhccCCHHHH---HHHHHHcCCChh
Confidence 3456789999999999999999999752110 001111111111111 0011223444 889999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||++.|+
T Consensus 333 ~Rps~~e~ 340 (373)
T 2x4f_A 333 WRISASEA 340 (373)
T ss_dssp GSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999886
No 342
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=96.93 E-value=0.0001 Score=71.69 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=46.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCCh----hHHHHHHHHHHHHHHhcCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQ----KIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~la~~C~~~~p 509 (519)
..+.++|+||+|++++|+++|+.|...... ......+..... ..+. ...+++. .+...|++.+|
T Consensus 194 ~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-------~~~~~~i~~~~~--~~~~~~~~~~s~~~~---~li~~~L~~dP 261 (361)
T 2yab_A 194 PLGLEADMWSIGVITYILLSGASPFLGDTK-------QETLANITAVSY--DFDEEFFSQTSELAK---DFIRKLLVKET 261 (361)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-------HHHHHHHHTTCC--CCCHHHHTTSCHHHH---HHHHHHSCSST
T ss_pred CCCccccHHHHHHHHHHHHhCCCCCCCCCH-------HHHHHHHHhcCC--CCCchhccCCCHHHH---HHHHHHCCCCh
Confidence 456789999999999999999999752110 000111111110 0111 1123333 78999999999
Q ss_pred CCCCCcccC
Q 010041 510 KSRPTMQRI 518 (519)
Q Consensus 510 ~~RP~m~~v 518 (519)
++|||+.|+
T Consensus 262 ~~R~t~~e~ 270 (361)
T 2yab_A 262 RKRLTIQEA 270 (361)
T ss_dssp TTSCCHHHH
T ss_pred hHCcCHHHH
Confidence 999999876
No 343
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=96.92 E-value=0.0003 Score=68.63 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.++|+||+|++++|+++|+.|..
T Consensus 202 ~~~~~~DiwslG~il~el~~g~~pf~ 227 (371)
T 2xrw_A 202 GYKENVDIWSVGCIMGEMIKGGVLFP 227 (371)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999974
No 344
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=96.91 E-value=0.00011 Score=71.40 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 206 ~~~~~~Di~slG~il~~l~~g~~pf~ 231 (360)
T 3eqc_A 206 HYSVQSDIWSMGLSLVEMAVGRYPIP 231 (360)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999974
No 345
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=96.90 E-value=0.00013 Score=69.68 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.0
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 177 ~~~~~~DiwslG~il~~l~~g~~pf~ 202 (324)
T 3mtl_A 177 DYSTQIDMWGVGCIFYEMATGRPLFP 202 (324)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 34678999999999999999999975
No 346
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.00019 Score=68.03 Aligned_cols=65 Identities=25% Similarity=0.502 Sum_probs=45.0
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|.+.... ....... .+.....++. ++...|++.+|++||++
T Consensus 217 ~~~~Di~slG~il~~l~~g~~pf~~~~~-------------~~~~~~~--~~~~~~~~~~---~li~~~l~~~p~~Rps~ 278 (312)
T 2iwi_A 217 ALPATVWSLGILLYDMVCGDIPFERDQE-------------ILEAELH--FPAHVSPDCC---ALIRRCLAPKPSSRPSL 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCCSHHH-------------HHHTCCC--CCTTSCHHHH---HHHHHHTCSSTTTSCCH
T ss_pred CccchHHHHHHHHHHHHHCCCCCCChHH-------------HhhhccC--CcccCCHHHH---HHHHHHccCChhhCcCH
Confidence 3478999999999999999999753211 1111111 1111223443 78999999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.||
T Consensus 279 ~e~ 281 (312)
T 2iwi_A 279 EEI 281 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 347
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=96.89 E-value=0.00011 Score=70.30 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=45.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|..|....... ...... ...+.........+..+...|++.+|++||
T Consensus 252 ~~~~~~Di~slG~il~el~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp 318 (332)
T 3qd2_B 252 NYSHKVDIFSLGLILFELLYSFSTQMERVRI----------ITDVRN---LKFPLLFTQKYPQEHMMVQDMLSPSPTERP 318 (332)
T ss_dssp CCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH----------HHHHHT---TCCCHHHHHHCHHHHHHHHHHHCSSGGGSC
T ss_pred CCcchhhHHHHHHHHHHHHHcCCChhHHHHH----------HHHhhc---cCCCcccccCChhHHHHHHHHccCCCCcCC
Confidence 4567899999999999999988775321100 000000 011111111112234789999999999999
Q ss_pred CcccC
Q 010041 514 TMQRI 518 (519)
Q Consensus 514 ~m~~v 518 (519)
++.||
T Consensus 319 s~~~~ 323 (332)
T 3qd2_B 319 EATDI 323 (332)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99886
No 348
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=96.89 E-value=0.00028 Score=67.14 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 186 ~~~~~DiwslG~il~el~~g~~pf~ 210 (317)
T 2pmi_A 186 YSTSIDIWSCGCILAEMITGKPLFP 210 (317)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999974
No 349
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=96.89 E-value=0.00015 Score=69.24 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||||++++|+++|+.|..
T Consensus 195 ~~~~~~Di~slG~il~~l~~g~~pf~ 220 (326)
T 1blx_A 195 SYATPVDLWSVGCIFAEMFRRKPLFR 220 (326)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcchhHHHHHHHHHHHHcCCCCCC
Confidence 45678999999999999999999975
No 350
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.00028 Score=70.37 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=44.7
Q ss_pred ccccccccchhhhhccccc-CCCCcccccccccCCCCCcchhhhhhhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILM-GRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~-g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.+.|+||+|++++|+++ |+.|...... ............... ....... +..+...|++.+|++
T Consensus 206 ~t~~~DiwSlG~il~ellt~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~L~~dP~~ 274 (432)
T 3p23_A 206 PTYTVDIFSAGCVFYYVISEGSHPFGKSLQ--------RQANILLGACSLDCLHPEKHEDVI---ARELIEKMIAMDPQK 274 (432)
T ss_dssp CCTHHHHHHHHHHHHHHHTTSCBTTBSTTT--------HHHHHHTTCCCCTTSCTTCHHHHH---HHHHHHHHSCSSGGG
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcchhhH--------HHHHHHhccCCccccCccccccHH---HHHHHHHHHhCCHhh
Confidence 4568999999999999999 8888742110 000000100000000 1111122 337899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.||
T Consensus 275 Rps~~ev 281 (432)
T 3p23_A 275 RPSAKHV 281 (432)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9999886
No 351
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=96.87 E-value=0.00014 Score=72.40 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.0
Q ss_pred ceeccccccccchhhhhcccccCCCCcc
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
....+.++|+||||++++|+++|+.|..
T Consensus 273 ~~~~~~~~DiwSlG~il~elltG~~pf~ 300 (429)
T 3kvw_A 273 GARYGMPIDMWSLGCILAELLTGYPLLP 300 (429)
T ss_dssp TBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence 3446778999999999999999999864
No 352
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=96.87 E-value=0.00015 Score=69.99 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=43.7
Q ss_pred cccccchhhhhcccccCCCCcccccc-------cccC--CCCCcchhhhhhhccCC---CCChhHHHHHHHHHHHHHHhc
Q 010041 438 KCDVYSFGVVALEILMGRHPGELLSS-------LSSS--SGPKIMLINVLDQRLSP---PVNQKIVQDIILVSTIAFACL 505 (519)
Q Consensus 438 ~~dv~sfg~~~le~l~g~~p~~~~~~-------~~~~--~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~la~~C~ 505 (519)
+.|+||||++++|+++|+.|...... .... ..+... .......... ........++. .+...|+
T Consensus 232 ~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~L 307 (348)
T 2pml_X 232 KVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDR-NHFLYPLTNKKSTCSNNFLSNEDI---DFLKLFL 307 (348)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSS-SSSTTTTCC--------CCCHHHH---HHHHHHC
T ss_pred hhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccch-hhhhccccccccccchhhcCHHHH---HHHHHHc
Confidence 89999999999999999999753211 0000 000000 0000000000 00011223333 8899999
Q ss_pred CCCCCCCCCcccC
Q 010041 506 SSQPKSRPTMQRI 518 (519)
Q Consensus 506 ~~~p~~RP~m~~v 518 (519)
+.+|++||++.|+
T Consensus 308 ~~dP~~Rps~~e~ 320 (348)
T 2pml_X 308 RKNPAERITSEDA 320 (348)
T ss_dssp CSSGGGSCCHHHH
T ss_pred cCChhhCCCHHHH
Confidence 9999999999886
No 353
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=96.85 E-value=0.0002 Score=67.02 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=46.3
Q ss_pred ccccccccchhhhhcccccCCCCccccccc----------c---cCCCCCcchhhhhhhccCC--C-----CChhHHHHH
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSL----------S---SSSGPKIMLINVLDQRLSP--P-----VNQKIVQDI 494 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~----------~---~~~~~~~~~~~~~d~~~~~--~-----~~~~~~~~~ 494 (519)
.+.+.|+||+|++++|+++|+.|....... . ....+........++.... + ......+++
T Consensus 178 ~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (288)
T 1ob3_A 178 YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESG 257 (288)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHH
Confidence 567899999999999999999997531100 0 0000000000000111100 0 001112333
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccC
Q 010041 495 ILVSTIAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 495 ~~~~~la~~C~~~~p~~RP~m~~v 518 (519)
. .+...|++.+|++|||+.|+
T Consensus 258 ~---~li~~~L~~dP~~Rpt~~e~ 278 (288)
T 1ob3_A 258 I---DLLSKMLKLDPNQRITAKQA 278 (288)
T ss_dssp H---HHHHHHTCSSTTTSCCHHHH
T ss_pred H---HHHHHHcCCCcccCCCHHHH
Confidence 3 88999999999999999886
No 354
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=96.84 E-value=0.00015 Score=69.39 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.7
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 215 ~~~~~DiwslG~il~ell~g~~pf~ 239 (329)
T 3gbz_A 215 YSTSVDIWSIACIWAEMLMKTPLFP 239 (329)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCcC
Confidence 5678999999999999999999974
No 355
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=96.81 E-value=0.00024 Score=68.83 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=45.8
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC-
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP- 513 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP- 513 (519)
.+.+.|+||||++++|+++|+.|....... .....+...+... .++.+....+++. .+...|++.+|++||
T Consensus 239 ~~~~~DvwslG~il~ell~g~~pf~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~---~li~~~L~~dP~~R~~ 310 (355)
T 1vzo_A 239 HDKAVDWWSLGVLMYELLTGASPFTVDGEK----NSQAEISRRILKS-EPPYPQEMSALAK---DLIQRLLMKDPKKRLG 310 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHHSSCTTSCTTSC----CCHHHHHHHHHHC-CCCCCTTSCHHHH---HHHHHHTCSSGGGSTT
T ss_pred CCchhhHHHHHHHHHHHHHCCCCCccCCcc----chHHHHHHHHhcc-CCCCCcccCHHHH---HHHHHHhhhCHHHhcC
Confidence 457899999999999999999997532110 0000111111111 1112222233444 789999999999999
Q ss_pred ----CcccC
Q 010041 514 ----TMQRI 518 (519)
Q Consensus 514 ----~m~~v 518 (519)
++.|+
T Consensus 311 ~~~~s~~el 319 (355)
T 1vzo_A 311 CGPRDADEI 319 (355)
T ss_dssp SSTTTHHHH
T ss_pred CCCCCHHHH
Confidence 66664
No 356
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=96.81 E-value=0.00022 Score=72.47 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=46.3
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.++|+||+|++++|+++|+.|...... ......+ ........ .....+++. .+...|++.+|.+
T Consensus 214 ~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dp~~ 282 (494)
T 3lij_A 214 YDEKCDVWSIGVILFILLAGYPPFGGQTD--------QEILRKVEKGKYTFDSPEWKNVSEGAK---DLIKQMLQFDSQR 282 (494)
T ss_dssp BCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCSGGGTTSCHHHH---HHHHHHTCSSTTT
T ss_pred CCCchhHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhCCCCCCchhcccCCHHHH---HHHHHHCCCChhh
Confidence 56789999999999999999999753110 0111111 11111000 011223444 7899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 283 R~s~~e~ 289 (494)
T 3lij_A 283 RISAQQA 289 (494)
T ss_dssp SCCHHHH
T ss_pred CccHHHH
Confidence 9999886
No 357
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=96.80 E-value=0.0003 Score=70.95 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=46.2
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTM 515 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 515 (519)
+.+.|+||+|++++|+++|+.|..... .......+.+..... +.....++. .+...|++.+|++|||+
T Consensus 194 ~~~~DiwSlGvil~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~--p~~~s~~~~---~Li~~~L~~dP~~Rpt~ 261 (476)
T 2y94_A 194 GPEVDIWSSGVILYALLCGTLPFDDDH-------VPTLFKKICDGIFYT--PQYLNPSVI---SLLKHMLQVDPMKRATI 261 (476)
T ss_dssp SHHHHHHHHHHHHHHHHHSSCSSCCSS-------SHHHHHHHHTTCCCC--CTTCCHHHH---HHHHHHTCSSTTTSCCH
T ss_pred CCcceehhhHHHHHHHhhCCCCCCCCC-------HHHHHHHHhcCCcCC--CccCCHHHH---HHHHHHcCCCchhCcCH
Confidence 468999999999999999999975211 000111112211111 111223444 78999999999999999
Q ss_pred ccC
Q 010041 516 QRI 518 (519)
Q Consensus 516 ~~v 518 (519)
.||
T Consensus 262 ~ei 264 (476)
T 2y94_A 262 KDI 264 (476)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 358
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.00031 Score=69.18 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=46.9
Q ss_pred eccccccccchhhhhcccccCCCCccccccccc---------CCCCCcchhhh-------h--hhccCC--CCChhHHHH
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSS---------SSGPKIMLINV-------L--DQRLSP--PVNQKIVQD 493 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~---------~~~~~~~~~~~-------~--d~~~~~--~~~~~~~~~ 493 (519)
..+.+.|+||||++++|+++|+.|......... ...+....... + ...... .......+.
T Consensus 199 ~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (396)
T 4eut_A 199 KYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVL 278 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhh
Confidence 456789999999999999999999753211000 00000000000 0 001111 111222233
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccC
Q 010041 494 IILVSTIAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 494 ~~~~~~la~~C~~~~p~~RP~m~~v 518 (519)
+..+...|++.+|++||++.|+
T Consensus 279 ---l~~ll~~~L~~dP~~R~s~~e~ 300 (396)
T 4eut_A 279 ---LTPVLANILEADQEKCWGFDQF 300 (396)
T ss_dssp ---HHHHHHHHSCCCTTTSCCHHHH
T ss_pred ---chHHHHHhhccChhhhccHHHH
Confidence 3488999999999999999875
No 359
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=96.79 E-value=0.00016 Score=68.69 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||||++++|+++|+.|..
T Consensus 201 ~~~~~~Di~slG~il~el~~g~~pf~ 226 (320)
T 2i6l_A 201 NYTKAIDMWAAGCIFAEMLTGKTLFA 226 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cCCchhhhHhHHHHHHHHHhCCCCCC
Confidence 35678999999999999999999975
No 360
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=96.79 E-value=0.00027 Score=68.70 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 209 ~~~~~DiwslG~il~ell~g~~pf~ 233 (364)
T 3qyz_A 209 YTKSIDIWSVGCILAEMLSNRPIFP 233 (364)
T ss_dssp CSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCcchhHHHHHHHHHHHHHCCCCCC
Confidence 5678999999999999999999975
No 361
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=96.78 E-value=0.00073 Score=70.46 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=45.3
Q ss_pred eeccccccccchhhhhcccccCCCCccccc---ccccC----CCCCcchhhh------hhhccCC--CCChhHHHHHHHH
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLS---SLSSS----SGPKIMLINV------LDQRLSP--PVNQKIVQDIILV 497 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~---~~~~~----~~~~~~~~~~------~d~~~~~--~~~~~~~~~~~~~ 497 (519)
...+.+.|+||+|++++|+++|+.|..... .+... ........+. ....... .......+++.
T Consensus 198 ~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~-- 275 (676)
T 3qa8_A 198 KKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLE-- 275 (676)
T ss_dssp SCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHH--
T ss_pred CCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHH--
Confidence 345678999999999999999999974210 00000 0000000000 0011111 12223344444
Q ss_pred HHHHHHhcCCCCCCCCCcccC
Q 010041 498 STIAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 498 ~~la~~C~~~~p~~RP~m~~v 518 (519)
.+...|++.+|++|||+.|+
T Consensus 276 -dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 276 -RWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp -HHHHHHSCSSCC---CCTTC
T ss_pred -HHHHHHccCCHhhCcCHHHH
Confidence 88999999999999999886
No 362
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=96.77 E-value=0.00019 Score=72.76 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=46.9
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.++|+||+|++++|+++|+.|...... ......+ ......+. .....+++. .+...|++.+|++
T Consensus 204 ~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dp~~ 272 (484)
T 3nyv_A 204 YDEKCDVWSTGVILYILLSGCPPFNGANE--------YDILKKVEKGKYTFELPQWKKVSESAK---DLIRKMLTYVPSM 272 (484)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCSGGGGGSCHHHH---HHHHHHTCSSGGG
T ss_pred CCCcceeHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHcCCCCCCCcccccCCHHHH---HHHHHHCCCChhH
Confidence 45689999999999999999999753111 0111111 11111111 112234444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 273 R~s~~e~ 279 (484)
T 3nyv_A 273 RISARDA 279 (484)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999876
No 363
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=96.76 E-value=0.00026 Score=66.58 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.6
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||||++++|+++|+.|..
T Consensus 181 ~~~~~Di~slG~~l~~l~~g~~pf~ 205 (299)
T 2r3i_A 181 YSTAVDIWSLGCIFAEMVTRRALFP 205 (299)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999975
No 364
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=96.75 E-value=7.3e-05 Score=70.41 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=45.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCC---CCChhHHHHHHHHHHHHHHhcCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSP---PVNQKIVQDIILVSTIAFACLSSQP 509 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~la~~C~~~~p 509 (519)
...+.+.|+||+|++++|+++|+.|........ .....+...... .......+++. .+...|++.+|
T Consensus 187 ~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dp 256 (294)
T 4eqm_A 187 EATDECTDIYSIGIVLYEMLVGEPPFNGETAVS-------IAIKHIQDSVPNVTTDVRKDIPQSLS---NVILRATEKDK 256 (294)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH-------HHHHHHSSCCCCHHHHSCTTSCHHHH---HHHHHHSCSSG
T ss_pred CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH-------HHHHHhhccCCCcchhcccCCCHHHH---HHHHHHhcCCH
Confidence 345678999999999999999999975321100 000111111000 00111223343 78999999999
Q ss_pred CCCC-CcccC
Q 010041 510 KSRP-TMQRI 518 (519)
Q Consensus 510 ~~RP-~m~~v 518 (519)
++|| +++++
T Consensus 257 ~~R~~~~~~l 266 (294)
T 4eqm_A 257 ANRYKTIQEM 266 (294)
T ss_dssp GGSCSSHHHH
T ss_pred hHccccHHHH
Confidence 9999 66543
No 365
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=96.72 E-value=0.00074 Score=67.93 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.6
Q ss_pred eeccccccccchhhhhcccccCCCCcc
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
...+.+.|+||+|++++|+++|+.|..
T Consensus 238 ~~~~~~~DiwSlG~il~ell~g~~pF~ 264 (464)
T 3ttj_A 238 MGYKENVDIWSVGCIMGEMVRHKILFP 264 (464)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 345678999999999999999999975
No 366
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=96.72 E-value=6.8e-05 Score=71.22 Aligned_cols=76 Identities=24% Similarity=0.353 Sum_probs=46.1
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||+|++++|+++|+.|....... ......+.....++ ......+++. .+...|++.+|+
T Consensus 194 ~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~ 263 (311)
T 3ork_A 194 DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-------SVAYQHVREDPIPPSARHEGLSADLD---AVVLKALAKNPE 263 (311)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-------HHHHHHHHCCCCCHHHHSTTCCHHHH---HHHHHHTCSSGG
T ss_pred CCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-------HHHHHHhcCCCCCcccccCCCCHHHH---HHHHHHHhcCHh
Confidence 34567899999999999999999997531110 00011111111100 0011123344 789999999999
Q ss_pred CCCCcccC
Q 010041 511 SRPTMQRI 518 (519)
Q Consensus 511 ~RP~m~~v 518 (519)
+||+..++
T Consensus 264 ~R~~~~~~ 271 (311)
T 3ork_A 264 NRYQTAAE 271 (311)
T ss_dssp GSCSSHHH
T ss_pred hChhhHHH
Confidence 99987654
No 367
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=96.68 E-value=0.00031 Score=67.71 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=45.9
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCC-cchhh-hhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPK-IMLIN-VLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~-~~~~~-~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||+|++++|+++|+.|.............. ..... ....... .+.....++. .+...|++.+|+
T Consensus 185 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~ 259 (345)
T 3a8x_A 185 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIR--IPRSLSVKAA---SVLKSFLNKDPK 259 (345)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSSTT
T ss_pred CCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCC--CCCCCCHHHH---HHHHHHhcCCHh
Confidence 345678999999999999999999986322110000000 00111 1121111 1222233444 788999999999
Q ss_pred CCCCc
Q 010041 511 SRPTM 515 (519)
Q Consensus 511 ~RP~m 515 (519)
+||+.
T Consensus 260 ~R~~~ 264 (345)
T 3a8x_A 260 ERLGC 264 (345)
T ss_dssp TSTTC
T ss_pred HCCCC
Confidence 99996
No 368
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=96.68 E-value=0.00045 Score=64.67 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=46.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCC--CChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPP--VNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||||++++|+++|+.|+.......... .....+....... ......+++. .+..+|++.+|++
T Consensus 178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~---~li~~~l~~dP~~ 250 (286)
T 3uqc_A 178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA----PAERDTAGQPIEPADIDRDIPFQIS---AVAARSVQGDGGI 250 (286)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE----ECCBCTTSCBCCHHHHCTTSCHHHH---HHHHHHHCTTSSC
T ss_pred CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH----HHHHHhccCCCChhhcccCCCHHHH---HHHHHHcccCCcc
Confidence 45678999999999999999999976422111000 0000000000000 0011223444 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
| |+.|+
T Consensus 251 R-s~~el 256 (286)
T 3uqc_A 251 R-SASTL 256 (286)
T ss_dssp C-CHHHH
T ss_pred C-CHHHH
Confidence 9 99876
No 369
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=96.68 E-value=0.00031 Score=71.29 Aligned_cols=74 Identities=26% Similarity=0.272 Sum_probs=46.4
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCC--ChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPV--NQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
.+.++|+||+|++++++++|+.|....... .....+......... .....+++. .+...|++.+|++|
T Consensus 199 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~-------~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dp~~R 268 (486)
T 3mwu_A 199 YDEKCDVWSAGVILYILLSGTPPFYGKNEY-------DILKRVETGKYAFDLPQWRTISDDAK---DLIRKMLTFHPSLR 268 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHTCCCSCSGGGGGSCHHHH---HHHHHHTCSSTTTS
T ss_pred CCchhhHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHhCCCCCCCcccCCCCHHHH---HHHHHHcCCChhhC
Confidence 456899999999999999999997521100 001111111111111 111223444 88999999999999
Q ss_pred CCcccC
Q 010041 513 PTMQRI 518 (519)
Q Consensus 513 P~m~~v 518 (519)
||+.|+
T Consensus 269 ~t~~~~ 274 (486)
T 3mwu_A 269 ITATQC 274 (486)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999875
No 370
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=96.67 E-value=0.00022 Score=70.05 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 207 ~~~~~~DiwSlG~il~ell~g~~pf~ 232 (388)
T 3oz6_A 207 KYTKGIDMWSLGCILGEILCGKPIFP 232 (388)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCChhhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999974
No 371
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=96.66 E-value=0.0003 Score=71.76 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=46.2
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh-hhccCCCCC--hhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL-DQRLSPPVN--QKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~--~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
.+.++|+||+|++++++++|+.|...... ......+ ......+.+ ....+++. .+...|++.+|.+
T Consensus 224 ~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~~~~~s~~~~---~li~~~L~~dp~~ 292 (504)
T 3q5i_A 224 YNEKCDVWSCGVIMYILLCGYPPFGGQND--------QDIIKKVEKGKYYFDFNDWKNISDEAK---ELIKLMLTYDYNK 292 (504)
T ss_dssp BCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCHHHHTTSCHHHH---HHHHHHTCSSTTT
T ss_pred CCchHHHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCccccCCCCHHHH---HHHHHHcCCChhH
Confidence 56789999999999999999999753110 0111111 111110000 01123343 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 293 R~t~~e~ 299 (504)
T 3q5i_A 293 RCTAEEA 299 (504)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9999886
No 372
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=96.63 E-value=0.00068 Score=65.44 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.5
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 206 ~~~~~DiwslG~il~ell~g~~pf~ 230 (351)
T 3mi9_A 206 YGPPIDLWGAGCIMAEMWTRSPIMQ 230 (351)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCcHhHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999975
No 373
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.00042 Score=67.97 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.7
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.++|+||+|++++|+++|+.|..
T Consensus 240 ~~~~~DiWSlG~il~ell~G~~pF~ 264 (398)
T 4b99_A 240 YTQAIDLWSVGCIFGEMLARRQLFP 264 (398)
T ss_dssp CCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCChhheehhHHHHHHHHHCCCCCC
Confidence 4678999999999999999999974
No 374
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=96.61 E-value=0.00053 Score=67.35 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=46.2
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCC-cchhh-hhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPK-IMLIN-VLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~-~~~~~-~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
...+.+.|+||+|++++|+++|+.|.............. ....+ ....... .+.....++. .+...|++.+|+
T Consensus 228 ~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~ 302 (396)
T 4dc2_A 228 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIR--IPRSLSVKAA---SVLKSFLNKDPK 302 (396)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSCTT
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccC--CCCcCCHHHH---HHHHHHhcCCHh
Confidence 345678999999999999999999986322110000000 00111 1122211 2222234444 789999999999
Q ss_pred CCCCc
Q 010041 511 SRPTM 515 (519)
Q Consensus 511 ~RP~m 515 (519)
+||+.
T Consensus 303 ~R~~~ 307 (396)
T 4dc2_A 303 ERLGC 307 (396)
T ss_dssp TSTTC
T ss_pred HcCCC
Confidence 99985
No 375
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=96.57 E-value=0.00036 Score=67.28 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=47.0
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||+|++++|+++|+.|...... ......+..... ..+....+++. .+...|++.+|++|
T Consensus 193 ~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-------~~~~~~i~~~~~--~~p~~~s~~~~---~li~~lL~~dp~~R 260 (345)
T 1xjd_A 193 QKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-------EELFHSIRMDNP--FYPRWLEKEAK---DLLVKLFVREPEKR 260 (345)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCC--CCCTTSCHHHH---HHHHHHSCSSGGGS
T ss_pred CCCCChhhhHHHHHHHHHHhcCCCCCCCCCH-------HHHHHHHHhCCC--CCCcccCHHHH---HHHHHHhcCCHhHc
Confidence 3456789999999999999999999752110 000111111111 11222223444 78899999999999
Q ss_pred CCcc-cC
Q 010041 513 PTMQ-RI 518 (519)
Q Consensus 513 P~m~-~v 518 (519)
|++. ||
T Consensus 261 ~~~~~~i 267 (345)
T 1xjd_A 261 LGVRGDI 267 (345)
T ss_dssp BTTBSCG
T ss_pred CCChHHH
Confidence 9997 65
No 376
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=96.56 E-value=0.0004 Score=66.98 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 190 ~~~~~DiwslG~il~ell~g~~~~~ 214 (346)
T 1ua2_A 190 YGVGVDMWAVGCILAELLLRVPFLP 214 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCchhhhHhHHHHHHHHHHCCCCCC
Confidence 4568999999999999999998864
No 377
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=96.56 E-value=0.00038 Score=66.83 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=46.0
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ......+...... .+....+++. .+...|++.+|++||
T Consensus 181 ~~~~~~DiwslG~il~ell~g~~Pf~~~~~-------~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~~R~ 248 (337)
T 1o6l_A 181 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-------ERLFELILMEEIR--FPRTLSPEAK---SLLAGLLKKDPKQRL 248 (337)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSSTTTST
T ss_pred CCCchhhcccchhHHHHHhcCCCCCCCCCH-------HHHHHHHHcCCCC--CCCCCCHHHH---HHHHHHhhcCHHHhc
Confidence 456789999999999999999999752110 0001111111111 1122234444 788999999999999
Q ss_pred -----CcccC
Q 010041 514 -----TMQRI 518 (519)
Q Consensus 514 -----~m~~v 518 (519)
++.||
T Consensus 249 g~~~~~~~ei 258 (337)
T 1o6l_A 249 GGGPSDAKEV 258 (337)
T ss_dssp TCSTTTHHHH
T ss_pred CCCCCCHHHH
Confidence 66554
No 378
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=96.54 E-value=0.00053 Score=66.23 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 199 ~~~~~~Di~slG~il~~l~~g~~pf~ 224 (353)
T 2b9h_A 199 KYSRAMDVWSCGCILAELFLRRPIFP 224 (353)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CccchhhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 379
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=96.53 E-value=0.0004 Score=65.12 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.6
Q ss_pred ccccccccchhhhhcccccCCCCc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPG 458 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~ 458 (519)
.+.+.|+||+|++++|+++|..|.
T Consensus 179 ~~~~~DiwslG~il~~l~~~~~p~ 202 (292)
T 3o0g_A 179 YSTSIDMWSAGCIFAELANAGRPL 202 (292)
T ss_dssp CCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCchHHHHHHHHHHHHHHHcCCCC
Confidence 467899999999999999999884
No 380
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.00036 Score=68.38 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.8
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 219 ~~~~~DiwslG~il~ell~g~~pf~ 243 (383)
T 3eb0_A 219 YTPSIDLWSIGCVFGELILGKPLFS 243 (383)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCcchhhhhHHHHHHHHHhCCCCCC
Confidence 5678999999999999999999975
No 381
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=96.50 E-value=0.00045 Score=66.73 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=44.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ......+...... .+.....++. .+...|++.+|.+||
T Consensus 214 ~~~~~~DiwslG~il~ell~g~~Pf~~~~~-------~~~~~~i~~~~~~--~p~~~~~~~~---~li~~lL~~dp~~R~ 281 (350)
T 1rdq_E 214 GYNKAVDWWALGVLIYEMAAGYPPFFADQP-------IQIYEKIVSGKVR--FPSHFSSDLK---DLLRNLLQVDLTKRF 281 (350)
T ss_dssp CBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTCCHHHH---HHHHHHSCSCTTTCT
T ss_pred CCCCcCCEecccHhHhHHhhCCCCCCCCCH-------HHHHHHHHcCCCC--CCCCCCHHHH---HHHHHHhhcCHHhcc
Confidence 456789999999999999999999752110 0011112222111 1222234444 789999999999999
Q ss_pred C
Q 010041 514 T 514 (519)
Q Consensus 514 ~ 514 (519)
+
T Consensus 282 ~ 282 (350)
T 1rdq_E 282 G 282 (350)
T ss_dssp T
T ss_pred C
Confidence 8
No 382
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=96.50 E-value=0.00043 Score=66.16 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.5
Q ss_pred eccccccccchhhhhcccccCCCCc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPG 458 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~ 458 (519)
..+.+.|+||+|++++|+++|+.|.
T Consensus 207 ~~~~~~DiwslG~il~~ll~g~~p~ 231 (330)
T 3nsz_A 207 MYDYSLDMWSLGCMLASMIFRKEPF 231 (330)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred cCCchhhHHHHHHHHHHHHhCCCCc
Confidence 3567899999999999999999997
No 383
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=96.49 E-value=0.0006 Score=66.45 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 218 ~~~~~~DiwslG~il~el~~g~~pf~ 243 (371)
T 4exu_A 218 HYNQTVDIWSVGCIMAEMLTGKTLFK 243 (371)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 384
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=96.49 E-value=0.0004 Score=67.36 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.6
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 211 ~~~~~DiwslG~il~~l~~g~~pf~ 235 (362)
T 3pg1_A 211 FTKLVDMWSAGCVMAEMFNRKALFR 235 (362)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCcHhHHHhHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999975
No 385
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=96.48 E-value=0.00024 Score=73.41 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=47.6
Q ss_pred cceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhh--ccCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010041 431 HTMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQ--RLSPPVNQKIVQDIILVSTIAFACLSSQ 508 (519)
Q Consensus 431 ~~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~la~~C~~~~ 508 (519)
.....+.++|+||+|++++|+++|+.|+..... ......+... ...........+++. .+...|++.+
T Consensus 329 ~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~-------~~~~~~i~~~~~~~~~~~~~~~s~~~~---dli~~~L~~d 398 (573)
T 3uto_A 329 EGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-------DETLRNVKSCDWNMDDSAFSGISEDGK---DFIRKLLLAD 398 (573)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-------HHHHHHHHTTCCCCCSGGGTTSCHHHH---HHHHTTSCSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-------HHHHHHHHhCCCCCCcccccCCCHHHH---HHHHHHccCC
Confidence 334456789999999999999999999752110 0000011110 011111111223444 7788999999
Q ss_pred CCCCCCcccC
Q 010041 509 PKSRPTMQRI 518 (519)
Q Consensus 509 p~~RP~m~~v 518 (519)
|++|||+.|+
T Consensus 399 p~~R~t~~e~ 408 (573)
T 3uto_A 399 PNTRMTIHQA 408 (573)
T ss_dssp GGGSCCHHHH
T ss_pred hhHCcCHHHH
Confidence 9999999875
No 386
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=96.48 E-value=0.00058 Score=66.03 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 200 ~~~~~~Di~slG~il~el~~g~~pf~ 225 (353)
T 3coi_A 200 HYNQTVDIWSVGCIMAEMLTGKTLFK 225 (353)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSSB
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 35678999999999999999999975
No 387
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=96.44 E-value=0.00042 Score=68.81 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||||++++|+++|+.|..
T Consensus 233 ~~~~~~DiwSlG~il~ell~G~~pf~ 258 (420)
T 1j1b_A 233 DYTSSIDVWSAGCVLAELLLGQPIFP 258 (420)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCchhhhHHHHHHHHHHHhCCCCCC
Confidence 35678999999999999999999975
No 388
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=96.42 E-value=0.00046 Score=69.13 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=47.6
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
....+.+.|+||||++++|+++|+.|...... ......+...... .+....+++. .+...|++.+|++
T Consensus 323 ~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-------~~~~~~i~~~~~~--~p~~~~~~~~---~li~~~L~~dP~~ 390 (446)
T 4ejn_A 323 DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-------EKLFELILMEEIR--FPRTLGPEAK---SLLSGLLKKDPKQ 390 (446)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSSTTT
T ss_pred CCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-------HHHHHHHHhCCCC--CCccCCHHHH---HHHHHHcccCHHH
Confidence 34456799999999999999999999752110 0001111111111 1122223444 7899999999999
Q ss_pred CC-----CcccC
Q 010041 512 RP-----TMQRI 518 (519)
Q Consensus 512 RP-----~m~~v 518 (519)
|| ++.|+
T Consensus 391 R~~~~~~t~~el 402 (446)
T 4ejn_A 391 RLGGGSEDAKEI 402 (446)
T ss_dssp STTCSTTTHHHH
T ss_pred hCCCCCCCHHHH
Confidence 99 77664
No 389
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=96.41 E-value=0.00072 Score=66.11 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=45.7
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
.+.+.|+||+|++++|+++|+.|...... .........+.... ...+....+++. .+...|++.+|++||+
T Consensus 194 ~~~~~DiwSlG~il~elltG~~Pf~~~~~-----~~~~~~~~~~~~~~-~~~p~~~s~~~~---~li~~lL~~dP~~R~s 264 (384)
T 4fr4_A 194 YSFAVDWWSLGVTAYELLRGRRPYHIRSS-----TSSKEIVHTFETTV-VTYPSAWSQEMV---SLLKKLLEPNPDQRFS 264 (384)
T ss_dssp BCTTHHHHHHHHHHHHHHHSSCSSCCCTT-----SCHHHHHHHHHHCC-CCCCTTSCHHHH---HHHHHHSCSSGGGSCC
T ss_pred CCccceeechHHHHHHHHhCCCCCCCCCC-----ccHHHHHHHHhhcc-cCCCCcCCHHHH---HHHHHHhcCCHhHhcc
Confidence 46689999999999999999999853211 00001111111111 112222234444 7899999999999998
Q ss_pred -ccc
Q 010041 515 -MQR 517 (519)
Q Consensus 515 -m~~ 517 (519)
+++
T Consensus 265 ~~~~ 268 (384)
T 4fr4_A 265 QLSD 268 (384)
T ss_dssp SHHH
T ss_pred cHHH
Confidence 444
No 390
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=96.32 E-value=0.00073 Score=65.32 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=45.6
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||+|++++|+++|+.|..... .......+...... .+....+++. .+...|++.+|++|
T Consensus 196 ~~~~~~~DiwslG~il~ell~G~~Pf~~~~-------~~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~~R 263 (353)
T 2i0e_A 196 QPYGKSVDWWAFGVLLYEMLAGQAPFEGED-------EDELFQSIMEHNVA--YPKSMSKEAV---AICKGLMTKHPGKR 263 (353)
T ss_dssp CCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSCTTSC
T ss_pred CCcCCcccccchHHHHHHHHcCCCCCCCCC-------HHHHHHHHHhCCCC--CCCCCCHHHH---HHHHHHhhcCHHHc
Confidence 345678999999999999999999975211 00011112222211 1222234444 78999999999999
Q ss_pred CCc
Q 010041 513 PTM 515 (519)
Q Consensus 513 P~m 515 (519)
|++
T Consensus 264 ~~~ 266 (353)
T 2i0e_A 264 LGC 266 (353)
T ss_dssp TTC
T ss_pred CCC
Confidence 975
No 391
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=96.31 E-value=0.00077 Score=66.26 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.8
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 219 ~~~~~DiwSlG~il~ell~g~~pf~ 243 (394)
T 4e7w_A 219 YTTNIDIWSTGCVMAELMQGQPLFP 243 (394)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 5678999999999999999999975
No 392
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=96.30 E-value=0.00059 Score=64.95 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||+|++++|+++|+.|...... ......++..... .+....+++. .+...|++.+|++|
T Consensus 178 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~-------~~~~~~i~~~~~~--~p~~~~~~~~---~li~~lL~~dp~~R 245 (318)
T 1fot_A 178 KPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-------MKTYEKILNAELR--FPPFFNEDVK---DLLSRLITRDLSQR 245 (318)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSCTTTC
T ss_pred CCCCcccchhhhHHHHHHHHhCCCCCCCCCH-------HHHHHHHHhCCCC--CCCCCCHHHH---HHHHHHhccCHHHc
Confidence 3456789999999999999999999752110 0011122222221 1122224444 78899999999999
Q ss_pred C-----CcccC
Q 010041 513 P-----TMQRI 518 (519)
Q Consensus 513 P-----~m~~v 518 (519)
| ++.||
T Consensus 246 ~~~~~~~~~~i 256 (318)
T 1fot_A 246 LGNLQNGTEDV 256 (318)
T ss_dssp TTSSTTTTHHH
T ss_pred CCCcCCCHHHH
Confidence 9 65554
No 393
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.27 E-value=0.0005 Score=67.91 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.7
Q ss_pred ccccccccchhhhhcccccCCCCcc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
.+.+.|+||+|++++|+++|+.|..
T Consensus 213 ~~~~~DiwSlG~il~ell~g~~pf~ 237 (405)
T 3rgf_A 213 YTKAIDIWAIGCIFAELLTSEPIFH 237 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCC
Confidence 5678999999999999999999974
No 394
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=96.25 E-value=0.0003 Score=66.21 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=42.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhh--hhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVL--DQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
..+.+.|+||+|++++|++++..+....... ..... .....+..+....+++. ++...|++.+|++
T Consensus 207 ~~~~~~Di~slG~il~~l~~p~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~l~~dp~~ 274 (303)
T 1zy4_A 207 HYNEKIDMYSLGIIFFEMIYPFSTGMERVNI---------LKKLRSVSIEFPPDFDDNKMKVEK---KIIRLLIDHDPNK 274 (303)
T ss_dssp CCCTHHHHHHHHHHHHHHHSCCSSHHHHHHH---------HHHHHSTTCCCCTTCCTTTSHHHH---HHHHHHTCSSGGG
T ss_pred CCcchhhHHHHHHHHHHHHhccCCchhHHHH---------HHhccccccccCccccccchHHHH---HHHHHHHhcCccc
Confidence 3567899999999999999833221100000 00000 11111112222223333 8899999999999
Q ss_pred CCCcccC
Q 010041 512 RPTMQRI 518 (519)
Q Consensus 512 RP~m~~v 518 (519)
|||+.|+
T Consensus 275 Rps~~~l 281 (303)
T 1zy4_A 275 RPGARTL 281 (303)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9999886
No 395
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=96.23 E-value=0.001 Score=68.03 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=47.3
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchh-hhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLI-NVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
...+.++|+||+|++++|+++|+.|...... ......+. .+...... .+.....++. .+...|++.+|++
T Consensus 364 ~~~~~~~DiwSlGvilyelltG~~PF~~~~~----~~~~~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~~ 434 (543)
T 3c4z_A 364 EEYDFSVDYFALGVTLYEMIAARGPFRARGE----KVENKELKQRVLEQAVT--YPDKFSPASK---DFCEALLQKDPEK 434 (543)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCSSCCTTC----CCCHHHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHSCSSGGG
T ss_pred CCCChHHhcCcchHHHHHHHhCCCCCCCCcc----chhHHHHHHHHhhcccC--CCcccCHHHH---HHHHHhccCCHhH
Confidence 3456789999999999999999999753210 00000111 11121111 1222234444 7889999999999
Q ss_pred CCCccc
Q 010041 512 RPTMQR 517 (519)
Q Consensus 512 RP~m~~ 517 (519)
||++.+
T Consensus 435 R~~~~~ 440 (543)
T 3c4z_A 435 RLGFRD 440 (543)
T ss_dssp SCCCBT
T ss_pred CCCCcc
Confidence 998754
No 396
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=96.17 E-value=0.00049 Score=65.81 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=44.9
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ......+...... .+....+++. .+...|++.+|++||
T Consensus 197 ~~~~~~DiwslG~il~el~~g~~pf~~~~~-------~~~~~~i~~~~~~--~p~~~~~~~~---~li~~~L~~dp~~R~ 264 (327)
T 3a62_A 197 GHNRAVDWWSLGALMYDMLTGAPPFTGENR-------KKTIDKILKCKLN--LPPYLTQEAR---DLLKKLLKRNAASRL 264 (327)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-------HHHHHHHHHTCCC--CCTTSCHHHH---HHHHHHSCSCGGGST
T ss_pred CCCCcccchhHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHhCCCC--CCCCCCHHHH---HHHHHHHhcCHhhcc
Confidence 346789999999999999999999753110 0011112221111 1222234444 789999999999999
Q ss_pred Ccc
Q 010041 514 TMQ 516 (519)
Q Consensus 514 ~m~ 516 (519)
++.
T Consensus 265 ~~~ 267 (327)
T 3a62_A 265 GAG 267 (327)
T ss_dssp TSS
T ss_pred CCC
Confidence 543
No 397
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0085 Score=48.32 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=14.5
Q ss_pred CCEEEccCCCCCccCCccccCCCCCCEEEccCCcC
Q 010041 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185 (519)
Q Consensus 151 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (519)
|++|+|++|.++..-+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444332223334444444444444433
No 398
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.13 E-value=0.011 Score=47.54 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=32.4
Q ss_pred EEEccCCCCC-ccCCccccCCCCCCEEEccCCcCcccCchhccCCCCCCEEeccCCcCC
Q 010041 153 VLDLGSNNLN-GTIPIEIGSVRNLETLSLDGNKLSGTIPIEIESLRNLQWLDLSSNKLS 210 (519)
Q Consensus 153 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 210 (519)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 23443321 25667777777776555555666677777777766554
No 399
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=96.11 E-value=0.00041 Score=67.13 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=45.7
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.++|+||+|++++|+++|+.|...... ......+...... .+....+++. .+...|++.+|++|
T Consensus 199 ~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-------~~~~~~i~~~~~~--~p~~~~~~~~---~li~~lL~~dP~~R 266 (353)
T 3txo_A 199 MLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-------DDLFEAILNDEVV--YPTWLHEDAT---GILKSFMTKNPTMR 266 (353)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHCCCC--CCTTSCHHHH---HHHHHHTCSSGGGS
T ss_pred CCcCCccCCCcchHHHHHHHhCCCCCCCCCH-------HHHHHHHHcCCCC--CCCCCCHHHH---HHHHHHhhhCHHHc
Confidence 3456789999999999999999999753110 0011112222211 1122223444 78899999999999
Q ss_pred CCc
Q 010041 513 PTM 515 (519)
Q Consensus 513 P~m 515 (519)
|+.
T Consensus 267 ~~~ 269 (353)
T 3txo_A 267 LGS 269 (353)
T ss_dssp TTS
T ss_pred cCC
Confidence 997
No 400
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=96.09 E-value=0.0007 Score=65.96 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=46.1
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRP 513 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP 513 (519)
..+.+.|+||+|++++|+++|+.|...... ......++..... .+.....++. .+...|++.+|.+||
T Consensus 215 ~~~~~~DiwslG~il~ell~G~~Pf~~~~~-------~~~~~~i~~~~~~--~~~~~~~~~~---~li~~lL~~dp~~R~ 282 (373)
T 2r5t_A 215 PYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-------AEMYDNILNKPLQ--LKPNITNSAR---HLLEGLLQKDRTKRL 282 (373)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-------HHHHHHHHHSCCC--CCSSSCHHHH---HHHHHHTCSSGGGST
T ss_pred CCCchhhhHHHHHHHHHHHcCCCCCCCCCH-------HHHHHHHHhcccC--CCCCCCHHHH---HHHHHHcccCHHhCC
Confidence 456789999999999999999999752110 0011112221111 1122223444 788999999999999
Q ss_pred Cccc
Q 010041 514 TMQR 517 (519)
Q Consensus 514 ~m~~ 517 (519)
++.+
T Consensus 283 ~~~~ 286 (373)
T 2r5t_A 283 GAKD 286 (373)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9853
No 401
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=96.09 E-value=0.0013 Score=63.85 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.2
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 202 ~~~~~~DiwslG~il~ell~g~~pf~ 227 (367)
T 1cm8_A 202 RYTQTVDIWSVGCIMAEMITGKTLFK 227 (367)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCChhhhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 402
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=96.05 E-value=0.00086 Score=65.21 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.1
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|+.|..
T Consensus 206 ~~~~~~DiwslG~il~ell~g~~pf~ 231 (367)
T 2fst_X 206 HYNQTVDIWSVGCIMAELLTGRTLFP 231 (367)
T ss_dssp SCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999975
No 403
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=96.02 E-value=0.00083 Score=69.02 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=45.4
Q ss_pred eeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 433 MVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 433 ~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
...+.+.|+||+|++++|+++|+.|...... ......+...+.. .....+.....++. .+...|++.+|.+|
T Consensus 360 ~~~~~~~DiwSLGvilyeLltG~~PF~~~~~----~~~~~~i~~~i~~-~~~~~p~~~s~~~~---dLI~~lL~~dP~~R 431 (576)
T 2acx_A 360 ERYTFSPDWWALGCLLYEMIAGQSPFQQRKK----KIKREEVERLVKE-VPEEYSERFSPQAR---SLCSQLLCKDPAER 431 (576)
T ss_dssp CEESSHHHHHHHHHHHHHHHHSSCSSSCSSS----CCCHHHHHHHHHH-CCCCCCTTSCHHHH---HHHHHHTCSSGGGS
T ss_pred CCCCccchHHHHHHHHHHHHhCCCCCccccc----chhHHHHHHHhhc-ccccCCccCCHHHH---HHHHHhccCCHHHc
Confidence 3456789999999999999999999863210 0000111111111 11112222334444 78899999999999
Q ss_pred CC
Q 010041 513 PT 514 (519)
Q Consensus 513 P~ 514 (519)
|+
T Consensus 432 ~g 433 (576)
T 2acx_A 432 LG 433 (576)
T ss_dssp TT
T ss_pred CC
Confidence 94
No 404
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=95.97 E-value=0.00097 Score=70.39 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=47.0
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
....+.+.|+||||++++|+++|+.|..... .......++..... .+....+++. .+...|++.+|++
T Consensus 516 ~~~~~~~~DvwSlGvilyelltG~~Pf~~~~-------~~~~~~~i~~~~~~--~p~~~s~~~~---~li~~lL~~dP~~ 583 (674)
T 3pfq_A 516 YQPYGKSVDWWAFGVLLYEMLAGQAPFEGED-------EDELFQSIMEHNVA--YPKSMSKEAV---AICKGLMTKHPGK 583 (674)
T ss_dssp CCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHSSCCC--CCTTSCHHHH---HHHHHHSCSSSTT
T ss_pred CCCCCccceEechHHHHHHHHcCCCCCCCCC-------HHHHHHHHHhCCCC--CCccCCHHHH---HHHHHHccCCHHH
Confidence 3456778999999999999999999975311 00011112221111 1222334444 7889999999999
Q ss_pred CCCc
Q 010041 512 RPTM 515 (519)
Q Consensus 512 RP~m 515 (519)
||++
T Consensus 584 R~~~ 587 (674)
T 3pfq_A 584 RLGC 587 (674)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9997
No 405
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=95.92 E-value=0.0021 Score=64.06 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.8
Q ss_pred eccccccccchhhhhcccccCCCCcc
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGE 459 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~ 459 (519)
..+.+.|+||+|++++|+++|..|..
T Consensus 228 ~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 228 NYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp CCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCcccccchHHHHHHHHHhcccccc
Confidence 35678999999999999999877653
No 406
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=95.91 E-value=0.0016 Score=63.06 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=22.1
Q ss_pred ccccccccchhhhhcccccCCCCc
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPG 458 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~ 458 (519)
.+.++|+||+|+++.|+++|+.|.
T Consensus 224 y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 224 QTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred CCCccchhhhHHHHHHHHHCCCCC
Confidence 467899999999999999999997
No 407
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=95.61 E-value=0.0029 Score=63.47 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCCCCCCCcccC
Q 010041 497 VSTIAFACLSSQPKSRPTMQRI 518 (519)
Q Consensus 497 ~~~la~~C~~~~p~~RP~m~~v 518 (519)
+..+...|++.+|++|||+.||
T Consensus 373 ~~dLl~~mL~~dP~~R~t~~e~ 394 (458)
T 3rp9_A 373 AIHLLKRMLVFNPNKRITINEC 394 (458)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHH
T ss_pred HHHHHHHHhccCccccCCHHHH
Confidence 3488999999999999999886
No 408
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=95.33 E-value=0.0021 Score=63.41 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=45.9
Q ss_pred ccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhh--ccCCCCChhHHHHHHHHHHHHHHhcCCCCCC-
Q 010041 435 VTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQ--RLSPPVNQKIVQDIILVSTIAFACLSSQPKS- 511 (519)
Q Consensus 435 ~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~- 511 (519)
.+.++|+||+|++++|+++|+.|..... .......+... ...-+......+++. .+...|++.+|.+
T Consensus 250 ~~~~~DiwSlGvilyell~G~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~~~s~~~~---~li~~lL~~~~~rl 319 (410)
T 3v8s_A 250 YGRECDWWSVGVFLYEMLVGDTPFYADS-------LVGTYSKIMNHKNSLTFPDDNDISKEAK---NLICAFLTDREVRL 319 (410)
T ss_dssp EETHHHHHHHHHHHHHHHHSSCTTCCSS-------HHHHHHHHHTHHHHCCCCTTCCCCHHHH---HHHHHHSSCGGGCT
T ss_pred CCCcceEecchHHHHHHHhCCCCCCCCC-------hhhHHHHHHhccccccCCCcccccHHHH---HHHHHHccChhhhC
Confidence 4578999999999999999999975211 00011111111 111111112234444 7788999988988
Q ss_pred -CCCcccC
Q 010041 512 -RPTMQRI 518 (519)
Q Consensus 512 -RP~m~~v 518 (519)
||++.||
T Consensus 320 gR~~~~ei 327 (410)
T 3v8s_A 320 GRNGVEEI 327 (410)
T ss_dssp TSSCHHHH
T ss_pred CCCCHHHH
Confidence 9999876
No 409
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.09 E-value=0.0047 Score=64.11 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=45.4
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchh-hhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLI-NVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSR 512 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 512 (519)
..+.++|+||+||+++|+++|+.|...... .....+. ....... ..+....+++. .+...|++.+|.+|
T Consensus 367 ~y~~~vDiWSLGvilYEmLtG~~PF~~~~~-----~~~~~i~~~i~~~~~--~~p~~~S~~a~---dLI~~lL~~dP~~R 436 (689)
T 3v5w_A 367 AYDSSADWFSLGCMLFKLLRGHSPFRQHKT-----KDKHEIDRMTLTMAV--ELPDSFSPELR---SLLEGLLQRDVNRR 436 (689)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCTTCGGGC-----CCHHHHHHHHHHCCC--CCCTTSCHHHH---HHHHHHTCSCGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-----HHHHHHHHhhcCCCC--CCCccCCHHHH---HHHHHHccCCHhHC
Confidence 456789999999999999999999853110 0000111 1111111 12222334554 78999999999999
Q ss_pred CCc
Q 010041 513 PTM 515 (519)
Q Consensus 513 P~m 515 (519)
++.
T Consensus 437 l~~ 439 (689)
T 3v5w_A 437 LGC 439 (689)
T ss_dssp TTC
T ss_pred CCC
Confidence 983
No 410
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=94.51 E-value=0.0034 Score=61.93 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=43.7
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhh--hccCCC-CChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLD--QRLSPP-VNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d--~~~~~~-~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.++|+||||++++|+++|+.|...... ......++. .....+ .+....+++. .+...|++ +|+
T Consensus 246 ~~~~~~DiwSlGvilyelltG~~Pf~~~~~-------~~~~~~i~~~~~~~~~p~~~~~~s~~~~---dli~~lL~-~p~ 314 (412)
T 2vd5_A 246 SYGPECDWWALGVFAYEMFYGQTPFYADST-------AETYGKIVHYKEHLSLPLVDEGVPEEAR---DFIQRLLC-PPE 314 (412)
T ss_dssp EECTHHHHHHHHHHHHHHHHSSCTTCCSSH-------HHHHHHHHTHHHHCCCC----CCCHHHH---HHHHTTSS-CGG
T ss_pred CCChHHhhhHHhHHHHHHHhCCCCCCCCCH-------HHHHHHHHhcccCcCCCccccCCCHHHH---HHHHHHcC-Chh
Confidence 456789999999999999999999752110 001111111 111111 1112234444 77889998 999
Q ss_pred CC---CCcccC
Q 010041 511 SR---PTMQRI 518 (519)
Q Consensus 511 ~R---P~m~~v 518 (519)
+| |+++||
T Consensus 315 ~Rlgr~~~~ei 325 (412)
T 2vd5_A 315 TRLGRGGAGDF 325 (412)
T ss_dssp GCTTTTTHHHH
T ss_pred hcCCCCCHHHH
Confidence 98 577664
No 411
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=94.51 E-value=0.0035 Score=62.36 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=43.5
Q ss_pred eccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhh--ccC-CCCChhHHHHHHHHHHHHHHhcCCCCC
Q 010041 434 VVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQ--RLS-PPVNQKIVQDIILVSTIAFACLSSQPK 510 (519)
Q Consensus 434 ~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~~~~~~~~~~la~~C~~~~p~ 510 (519)
..+.++|+||||++++|+++|+.|...... ......++.. ... +.......+++. .+...|++.+|+
T Consensus 257 ~~~~~~DvwSlGvil~elltG~~Pf~~~~~-------~~~~~~i~~~~~~~~~p~~~~~~s~~~~---dLi~~lL~~~~~ 326 (437)
T 4aw2_A 257 RYGPECDWWSLGVCMYEMLYGETPFYAESL-------VETYGKIMNHKERFQFPTQVTDVSENAK---DLIRRLICSREH 326 (437)
T ss_dssp EECTHHHHHHHHHHHHHHHHSSCTTCCSSH-------HHHHHHHHTHHHHCCCCSSCCCSCHHHH---HHHHTTSSCGGG
T ss_pred CCCCcCeeHHHHHHHHHHHhCCCCCCCCCh-------hHHHHhhhhccccccCCcccccCCHHHH---HHHHHHhccccc
Confidence 456789999999999999999999752110 0001111110 111 111011223444 566677777777
Q ss_pred C--CCCcccC
Q 010041 511 S--RPTMQRI 518 (519)
Q Consensus 511 ~--RP~m~~v 518 (519)
+ ||+++||
T Consensus 327 r~~r~~~~ei 336 (437)
T 4aw2_A 327 RLGQNGIEDF 336 (437)
T ss_dssp CTTTTTTHHH
T ss_pred ccCCCCHHHH
Confidence 7 9998775
No 412
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=93.48 E-value=0.013 Score=56.61 Aligned_cols=70 Identities=6% Similarity=-0.055 Sum_probs=42.6
Q ss_pred ceeccccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCChhHHHHHHHHHHHHHHhcCCCCCC
Q 010041 432 TMVVTEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVNQKIVQDIILVSTIAFACLSSQPKS 511 (519)
Q Consensus 432 ~~~~~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 511 (519)
....+.++|+||||++++|+++|+.|...... .... +......... .+... ++...|++.+|.+
T Consensus 259 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~------~~~~----~~~~~~~~~~---~~~~~---~~~~~~l~~~p~~ 322 (365)
T 3e7e_A 259 NKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG------GECK----PEGLFRRLPH---LDMWN---EFFHVMLNIPDCH 322 (365)
T ss_dssp TCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET------TEEE----ECSCCTTCSS---HHHHH---HHHHHHHCCCCTT
T ss_pred CCCCCccccHHHHHHHHHHHHhCCCccccCCC------Ccee----echhccccCc---HHHHH---HHHHHHcCCCCCC
Confidence 33467899999999999999999999743211 0000 1111111111 22333 6677889999999
Q ss_pred CC-Cccc
Q 010041 512 RP-TMQR 517 (519)
Q Consensus 512 RP-~m~~ 517 (519)
|| ++++
T Consensus 323 r~~~~~~ 329 (365)
T 3e7e_A 323 HLPSLDL 329 (365)
T ss_dssp CCCCHHH
T ss_pred cchHHHH
Confidence 85 4443
No 413
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.99 E-value=0.0099 Score=62.90 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=41.0
Q ss_pred cccccccchhhhhcccccCCCCcccccccccCCCCCcchhhhhhhccCCCCC-hhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010041 436 TEKCDVYSFGVVALEILMGRHPGELLSSLSSSSGPKIMLINVLDQRLSPPVN-QKIVQDIILVSTIAFACLSSQPKSRPT 514 (519)
Q Consensus 436 ~~~~dv~sfg~~~le~l~g~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~la~~C~~~~p~~RP~ 514 (519)
+.++|+||||++++|+++|..|..... . ...+ ...+ ....++ +..+...|++.+|++||+
T Consensus 254 ~~~sDi~slG~~l~~l~~g~~~~~~~~--~-~~~~-------------~~~~~~~~~~~---l~~li~~~l~~dP~~R~~ 314 (681)
T 2pzi_A 254 TVATDIYTVGRTLAALTLDLPTRNGRY--V-DGLP-------------EDDPVLKTYDS---YGRLLRRAIDPDPRQRFT 314 (681)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEETTEE--C-SSCC-------------TTCHHHHHCHH---HHHHHHHHTCSSGGGSCS
T ss_pred CCceehhhhHHHHHHHHhCCCCCcccc--c-cccc-------------ccccccccCHH---HHHHHhhhccCChhhCCC
Confidence 568999999999999999987754211 0 0000 0000 011123 347899999999999997
Q ss_pred ccc
Q 010041 515 MQR 517 (519)
Q Consensus 515 m~~ 517 (519)
..+
T Consensus 315 ~~~ 317 (681)
T 2pzi_A 315 TAE 317 (681)
T ss_dssp SHH
T ss_pred HHH
Confidence 554
No 414
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.17 E-value=13 Score=27.79 Aligned_cols=40 Identities=18% Similarity=0.032 Sum_probs=22.0
Q ss_pred chhhcCCCCCCEEEcccCcCCccCCccccCCCCCCEEEccC
Q 010041 118 PSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158 (519)
Q Consensus 118 ~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 158 (519)
..+|.+|..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345566666666666543 3334445566666666666643
No 415
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.87 E-value=33 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=21.6
Q ss_pred cCCccccCCCCCCEEEccCCCCCccCCccccCCCCCCEEEccC
Q 010041 140 TIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDG 182 (519)
Q Consensus 140 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (519)
+-...|.+|.+|+.+.+..+ ++..-...|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445556666666666543 2223334455556665555544
Done!