Query 010042
Match_columns 519
No_of_seqs 187 out of 1522
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 2.8E-44 9.6E-49 366.3 27.6 284 65-464 7-300 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 1.1E-39 3.8E-44 336.6 27.8 285 66-465 24-319 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 8E-40 2.7E-44 337.3 24.7 284 66-464 29-319 (332)
4 2an1_A Putative kinase; struct 99.3 2.1E-11 7.1E-16 122.8 15.0 114 66-205 5-121 (292)
5 1yt5_A Inorganic polyphosphate 99.2 4E-11 1.4E-15 119.1 10.6 98 68-206 2-99 (258)
6 1u0t_A Inorganic polyphosphate 99.0 1.8E-09 6.3E-14 109.7 14.5 125 66-207 4-135 (307)
7 2i2c_A Probable inorganic poly 99.0 2E-09 7E-14 107.5 11.9 94 68-206 2-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.7 0.00016 5.5E-09 75.7 11.8 155 39-213 13-181 (388)
9 1z0s_A Probable inorganic poly 94.1 0.085 2.9E-06 52.6 7.0 55 133-202 68-122 (278)
10 3pfn_A NAD kinase; structural 90.1 0.54 1.9E-05 48.5 7.4 68 133-214 108-175 (365)
11 3hl0_A Maleylacetate reductase 77.8 5.8 0.0002 40.4 8.3 107 45-169 8-119 (353)
12 3jzd_A Iron-containing alcohol 70.6 12 0.00041 38.1 8.6 105 47-169 13-121 (358)
13 2gru_A 2-deoxy-scyllo-inosose 67.5 10 0.00035 38.7 7.3 92 66-169 34-128 (368)
14 3okf_A 3-dehydroquinate syntha 66.8 12 0.00042 38.7 7.7 93 65-169 61-157 (390)
15 1pfk_A Phosphofructokinase; tr 66.1 12 0.00042 37.7 7.4 37 135-176 96-132 (320)
16 1oj7_A Hypothetical oxidoreduc 63.8 26 0.00089 36.0 9.6 123 45-181 27-173 (408)
17 1o2d_A Alcohol dehydrogenase, 62.7 72 0.0025 32.2 12.6 121 43-178 14-159 (371)
18 3uhj_A Probable glycerol dehyd 62.0 10 0.00035 39.1 6.1 115 42-176 25-147 (387)
19 1zxx_A 6-phosphofructokinase; 59.8 13 0.00044 37.5 6.2 37 135-176 95-131 (319)
20 3ox4_A Alcohol dehydrogenase 2 56.7 40 0.0014 34.4 9.5 118 44-176 5-147 (383)
21 3qbe_A 3-dehydroquinate syntha 56.2 17 0.00059 37.2 6.5 90 67-169 44-137 (368)
22 4a3s_A 6-phosphofructokinase; 54.0 20 0.00069 36.0 6.5 43 135-182 95-140 (319)
23 1sg6_A Pentafunctional AROM po 53.1 9.3 0.00032 39.4 3.9 40 135-176 107-148 (393)
24 3clh_A 3-dehydroquinate syntha 50.9 11 0.00038 38.0 4.0 92 66-169 26-119 (343)
25 1ujn_A Dehydroquinate synthase 49.9 28 0.00096 35.1 6.9 90 66-169 28-118 (348)
26 3kuu_A Phosphoribosylaminoimid 49.5 87 0.003 28.7 9.3 94 60-171 5-100 (174)
27 3iv7_A Alcohol dehydrogenase I 46.5 35 0.0012 34.7 7.0 104 46-169 12-120 (364)
28 1jq5_A Glycerol dehydrogenase; 46.1 39 0.0013 34.1 7.3 113 43-176 5-127 (370)
29 3bfj_A 1,3-propanediol oxidore 45.8 94 0.0032 31.5 10.2 126 44-180 7-155 (387)
30 2hig_A 6-phospho-1-fructokinas 45.6 15 0.00052 39.2 4.2 40 135-176 191-233 (487)
31 1ta9_A Glycerol dehydrogenase; 41.9 49 0.0017 34.7 7.4 119 38-176 59-186 (450)
32 4hf7_A Putative acylhydrolase; 41.0 13 0.00044 33.9 2.5 62 138-203 56-117 (209)
33 1xah_A Sadhqs, 3-dehydroquinat 39.2 23 0.0008 35.6 4.3 90 67-169 32-124 (354)
34 3ce9_A Glycerol dehydrogenase; 37.7 46 0.0016 33.3 6.2 108 44-172 8-123 (354)
35 1xmp_A PURE, phosphoribosylami 37.4 1.3E+02 0.0046 27.4 8.5 32 135-172 69-100 (170)
36 3hbm_A UDP-sugar hydrolase; PS 37.0 73 0.0025 31.1 7.4 35 126-169 218-252 (282)
37 2f48_A Diphosphate--fructose-6 36.0 33 0.0011 37.1 5.0 46 135-182 168-221 (555)
38 3ors_A N5-carboxyaminoimidazol 34.9 1.6E+02 0.0056 26.6 8.7 32 135-172 61-92 (163)
39 3oow_A Phosphoribosylaminoimid 34.7 2.6E+02 0.0089 25.3 10.3 86 69-172 8-94 (166)
40 3o8l_A 6-phosphofructokinase, 33.4 46 0.0016 37.5 5.7 41 135-176 491-534 (762)
41 4grd_A N5-CAIR mutase, phospho 32.9 2.9E+02 0.0098 25.2 10.1 86 69-172 15-101 (173)
42 1o4v_A Phosphoribosylaminoimid 32.5 2.9E+02 0.0099 25.4 10.0 81 78-172 21-102 (183)
43 3hno_A Pyrophosphate-dependent 32.4 55 0.0019 34.1 5.8 41 135-176 106-148 (419)
44 3rf7_A Iron-containing alcohol 31.5 2.5E+02 0.0084 28.5 10.6 115 41-169 21-159 (375)
45 3lp6_A Phosphoribosylaminoimid 31.2 2E+02 0.0068 26.3 8.6 84 68-173 9-97 (174)
46 2x9a_A Attachment protein G3P; 29.6 13 0.00045 28.4 0.4 10 137-146 41-50 (65)
47 3gw6_A Endo-N-acetylneuraminid 29.5 16 0.00056 35.8 1.1 15 134-148 46-60 (275)
48 1u11_A PURE (N5-carboxyaminoim 27.1 2.6E+02 0.0091 25.7 8.8 88 67-172 22-110 (182)
49 3trh_A Phosphoribosylaminoimid 26.6 3.6E+02 0.012 24.4 9.9 31 135-171 64-94 (169)
50 2ywx_A Phosphoribosylaminoimid 24.3 1.9E+02 0.0065 26.0 7.1 70 83-169 12-82 (157)
51 3opy_A 6-phosphofructo-1-kinas 24.0 1.4E+02 0.0049 34.4 7.7 41 135-176 690-733 (989)
52 1vlj_A NADH-dependent butanol 22.6 3.3E+02 0.011 27.6 9.6 123 44-178 17-162 (407)
53 3o8l_A 6-phosphofructokinase, 21.9 1.5E+02 0.0051 33.3 7.2 42 135-176 111-170 (762)
54 3rg8_A Phosphoribosylaminoimid 20.8 3.2E+02 0.011 24.5 7.9 31 135-171 61-91 (159)
55 1rrm_A Lactaldehyde reductase; 20.8 1.7E+02 0.0056 29.5 6.9 121 44-177 5-150 (386)
56 3o8o_A 6-phosphofructokinase s 20.5 1.6E+02 0.0056 33.1 7.2 41 135-176 485-528 (787)
57 4b4k_A N5-carboxyaminoimidazol 20.1 4.7E+02 0.016 24.0 8.9 87 66-170 21-109 (181)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=2.8e-44 Score=366.32 Aligned_cols=284 Identities=19% Similarity=0.178 Sum_probs=205.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEe-ecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 010042 65 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLG-EKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 142 (519)
Q Consensus 65 ~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~-~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GG 142 (519)
++++++||+||+||++++.++++.++..|....+ +.+. ...++++.+ +.+.+. .+...|||+||
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~-~~~~~~-------------~~~d~vv~~GG 72 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATK-YCQEFA-------------SKVDLIIVFGG 72 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHH-HHHHHT-------------TTCSEEEEEEC
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHH-HHHHhh-------------cCCCEEEEEcc
Confidence 4689999999999999999999999998876442 3332 245666543 333221 23458999999
Q ss_pred chHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCeeeEeEEEEeeeecCCCC
Q 010042 143 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 222 (519)
Q Consensus 143 DGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~~iD~w~V~~~~~~~~~ 222 (519)
||||++|++++... ..++|||+||+||||||||+|||+. ++.++++.|.+++++++|+|+++-
T Consensus 73 DGTl~~v~~~l~~~--~~~~~l~iiP~Gt~N~~ar~lg~~~--------~~~~a~~~i~~g~~~~iDlg~v~~------- 135 (304)
T 3s40_A 73 DGTVFECTNGLAPL--EIRPTLAIIPGGTCNDFSRTLGVPQ--------NIAEAAKLITKEHVKPVDVAKANG------- 135 (304)
T ss_dssp HHHHHHHHHHHTTC--SSCCEEEEEECSSCCHHHHHTTCCS--------SHHHHHHHHTTCCEEEEEEEEETT-------
T ss_pred chHHHHHHHHHhhC--CCCCcEEEecCCcHHHHHHHcCCCc--------cHHHHHHHHHhCCeEEEEEEEECC-------
Confidence 99999999999762 3578999999999999999999986 578899999999999999998740
Q ss_pred CCCCCCCCCCCCcccccccccccccccccCCccccccceeeeeccChhHHHHHHHHhhhccCchhhhhcccchHHHHHHH
Q 010042 223 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 302 (519)
Q Consensus 223 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~V~~~f~~~R~~~p~~f~srl~nkl~Y~~~g 302 (519)
++|+|++|+|+||+|++.++..++ +..|+++|+..+
T Consensus 136 ------------------------------------~~F~~~~~~G~da~v~~~~~~~~k--------~~~G~~~Y~~~~ 171 (304)
T 3s40_A 136 ------------------------------------QHFLNFWGIGLVSEVSNNIDAEEK--------AKLGKIGYYLST 171 (304)
T ss_dssp ------------------------------------EEESSEEEEC--------------------------CHHHHTTT
T ss_pred ------------------------------------EEEEEEEeehHHHHHHHhcCHHHh--------hcCCchHHHHHH
Confidence 279999999999999999886543 356899999998
Q ss_pred HHhhhhcccccCCCCCCCcceEEEEEEecCCcEEEEEeccceeEEEEEcCCCCcCCccCCCCcccccccccCCCCCccCC
Q 010042 303 GTQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWEELHIPRYIRSIVCLNLPSFSGGLDPWGKPFRKKLRERGLTPPYVDD 382 (519)
Q Consensus 303 ~k~~~f~~~l~~~~~k~~~~~i~l~v~~~dG~~~~i~lp~~~~~ivvlN~~s~gGG~~~w~~~~~~~~~~~~~~~a~vdD 382 (519)
+++ ++. ++++ .++|++ ||+ .++. +..+++|+|++|||||+.++| .++++|
T Consensus 172 l~~------l~~--~~~~--~~~i~~---dg~--~~~~--~~~~v~v~N~~~~Ggg~~~~p-------------~a~~~D 221 (304)
T 3s40_A 172 IRT------VKN--AETF--PVKITY---DGQ--VYED--EAVLVMVGNGEYLGGIPSFIP-------------NVKCDD 221 (304)
T ss_dssp C--------------CCE--EEEEEE---TTE--EEEE--EEEEEEEECSSEETTEECSST-------------TCCTTS
T ss_pred HHH------Hhh--cCCc--eEEEEE---CCE--EEEe--EEEEEEEECCCcCCCCcccCC-------------CCcCCC
Confidence 887 432 2332 456766 776 3433 577899999999999999988 479999
Q ss_pred CcEEEEEecchhH--HHHHHhc------CCCccEEEeecEEEEEEccCCCcceeeeecCCcCCCCCCCCCCcEEEEEEeC
Q 010042 383 GLLEIVGFRDAWH--GLVLLAP------NGHGTRLAQANRVRFEFEKGAADHTFMRIDGEPWKQPLPVDEDTVVVEISHL 454 (519)
Q Consensus 383 G~LEVv~~~~~~~--~~~l~~~------~~~~vrl~Q~~~v~i~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~i~I~~~ 454 (519)
|+|||++++.... +..++.. ..+.+++.|+++|+|+..+ ++++|+|||++... |++|+|.+
T Consensus 222 G~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~~----~~~~~~DGE~~~~~------p~~i~v~p- 290 (304)
T 3s40_A 222 GTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEE----EKEVDTDGESSLHT------PCQIELLQ- 290 (304)
T ss_dssp SCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEESS----CCEEEEC--CCEES------SEEEEEEE-
T ss_pred CEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeCC----CcEEEeCCCCCCCc------eEEEEEEC-
Confidence 9999999998643 2222211 2356889999999999876 79999999998763 89999997
Q ss_pred CeeeEEeCCC
Q 010042 455 RQVNMLATPC 464 (519)
Q Consensus 455 ~~~~mL~~~~ 464 (519)
++++|+++++
T Consensus 291 ~al~v~~p~~ 300 (304)
T 3s40_A 291 GHFTMIYNPA 300 (304)
T ss_dssp EEEEEECCTT
T ss_pred CeEEEEechh
Confidence 5999998864
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=1.1e-39 Score=336.62 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=210.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEee-cCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 143 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~-~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGD 143 (519)
+++++||+||+||++++.++++.+++.|....+ +.+.. ..++++.+ +.+.+. ..+...|||+|||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~-~~~~~~------------~~~~d~vvv~GGD 90 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATL-EAERAM------------HENYDVLIAAGGD 90 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHH-HHHHHT------------TTTCSEEEEEECH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHh------------hcCCCEEEEEcCc
Confidence 568999999999999998899999999976553 33322 34455432 222210 1234689999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCeeeEeEEEEeeeecCCCCC
Q 010042 144 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 223 (519)
Q Consensus 144 GTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~~iD~w~V~~~~~~~~~g 223 (519)
|||++|++++.+. ...+|||+||+||||||||+|||+. ++.++++.|.+++.+.+|+|+++
T Consensus 91 GTv~~v~~~l~~~--~~~~pl~iIP~GT~N~lAr~Lg~~~--------~~~~al~~i~~g~~~~iD~g~v~--------- 151 (337)
T 2qv7_A 91 GTLNEVVNGIAEK--PNRPKLGVIPMGTVNDFGRALHIPN--------DIMGALDVIIEGHSTKVDIGKMN--------- 151 (337)
T ss_dssp HHHHHHHHHHTTC--SSCCEEEEEECSSCCHHHHHTTCCS--------SHHHHHHHHHHTCEEEEEEEEET---------
T ss_pred hHHHHHHHHHHhC--CCCCcEEEecCCcHhHHHHHcCCCC--------CHHHHHHHHHcCCcEEEEEEEEC---------
Confidence 9999999999542 3579999999999999999999985 57889999999999999999874
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCccccccceeeeeccChhHHHHHHHHhhhccCchhhhhcccchHHHHHHHH
Q 010042 224 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 303 (519)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~V~~~f~~~R~~~p~~f~srl~nkl~Y~~~g~ 303 (519)
.++|+|++++|+||+|+..++..++ +..++++|...++
T Consensus 152 ----------------------------------~r~fl~~~~~G~~a~v~~~~~~~~k--------~~~G~~~Y~~~~l 189 (337)
T 2qv7_A 152 ----------------------------------NRYFINLAAGGQLTQVSYETPSKLK--------SIVGPFAYYIKGF 189 (337)
T ss_dssp ----------------------------------TEEESSEEEEECBCC---------------------CGGGSCCCTT
T ss_pred ----------------------------------CEEEEEEeeecccHHHHHHhhHHHH--------hccChHHHHHHHH
Confidence 0379999999999999998876543 3458899999888
Q ss_pred HhhhhcccccCCCCCCCcceEEEEEEecCCcEEEEEeccceeEEEEEcCCCCcCCccCCCCcccccccccCCCCCccCCC
Q 010042 304 TQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWEELHIPRYIRSIVCLNLPSFSGGLDPWGKPFRKKLRERGLTPPYVDDG 383 (519)
Q Consensus 304 k~~~f~~~l~~~~~k~~~~~i~l~v~~~dG~~~~i~lp~~~~~ivvlN~~s~gGG~~~w~~~~~~~~~~~~~~~a~vdDG 383 (519)
+. ++. .+.+ .++|++ ||+ .++. +...+++.|++++|||..++| .+.++||
T Consensus 190 ~~------l~~--~~~~--~~~i~~---dg~--~~~~--~~~~v~v~n~~~~gGg~~i~P-------------~a~~~DG 239 (337)
T 2qv7_A 190 EM------LPQ--MKAV--DLRIEY---DGN--VFQG--EALLFFLGLTNSMAGFEKLVP-------------DAKLDDG 239 (337)
T ss_dssp TT------GGG--BCCE--EEEEEE---TTE--EEEE--EEEEEEEESSCCCSSCSCSST-------------TCCSSSS
T ss_pred HH------HHh--CCCc--cEEEEE---CCE--EEEe--eEEEEEEECCCCCCCCCccCC-------------CCcCCCC
Confidence 87 331 2332 356666 776 3332 567888999999999999998 4799999
Q ss_pred cEEEEEecchh--HHHHHH--hcC-----CCccEEEeecEEEEEEccCCCcceeeeecCCcCCCCCCCCCCcEEEEEEeC
Q 010042 384 LLEIVGFRDAW--HGLVLL--APN-----GHGTRLAQANRVRFEFEKGAADHTFMRIDGEPWKQPLPVDEDTVVVEISHL 454 (519)
Q Consensus 384 ~LEVv~~~~~~--~~~~l~--~~~-----~~~vrl~Q~~~v~i~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~i~I~~~ 454 (519)
+|||++++... .++.++ +.. .+.+++.++++|+|+..+ ++++|+|||.+... |++|++.+
T Consensus 240 ~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~----~~~~~iDGE~~~~~------~i~i~v~p- 308 (337)
T 2qv7_A 240 YFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFT----DLQLNVDGEYGGKL------PANFLNLE- 308 (337)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSS----CCEEEETTEEEEES------CEEEEEEE-
T ss_pred eEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECC----CCeEEECCCcCCCC------cEEEEEEc-
Confidence 99999999863 232322 222 256889999999998754 68999999998753 79999997
Q ss_pred CeeeEEeCCCC
Q 010042 455 RQVNMLATPCC 465 (519)
Q Consensus 455 ~~~~mL~~~~~ 465 (519)
..++++++...
T Consensus 309 ~~l~v~~p~~~ 319 (337)
T 2qv7_A 309 RHIDVFAPNDI 319 (337)
T ss_dssp EEEEEECCTTS
T ss_pred CeEEEEecCcc
Confidence 59999998644
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=8e-40 Score=337.31 Aligned_cols=284 Identities=17% Similarity=0.149 Sum_probs=205.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEee-cCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 143 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~-~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGD 143 (519)
+++++||+||+||++ +.++.+.+.|....+ +.+.. ..++++.+ +.+.+. ..+...|||+|||
T Consensus 29 ~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~-~~~~~~------------~~~~d~vvv~GGD 92 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAAR-YVEEAR------------KFGVATVIAGGGD 92 (332)
T ss_dssp -CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHH-HHHHHH------------HHTCSEEEEEESH
T ss_pred cceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHH-HHHHHH------------hcCCCEEEEEccc
Confidence 478999999999977 456777777765432 33322 34555432 222211 0234689999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCeeeEeEEEEeeeecCCCCC
Q 010042 144 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 223 (519)
Q Consensus 144 GTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~~iD~w~V~~~~~~~~~g 223 (519)
|||++|++++.+......+|||+||+||+|||||+|||+. ++.++++.+.+++.+++|+|+++-
T Consensus 93 GTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~--------~~~~al~~i~~g~~~~iDlg~v~~-------- 156 (332)
T 2bon_A 93 GTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPE--------ALDKALKLAIAGDAIAIDMAQVNK-------- 156 (332)
T ss_dssp HHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCS--------SHHHHHHHHHHSEEEEEEEEEETT--------
T ss_pred hHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcCCCC--------CHHHHHHHHHcCCeEEeeEEEECC--------
Confidence 9999999999843213578899999999999999999985 578889999999999999998740
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCccccccceeeeeccChhHHHHHHHHhhhccCchhhhhcccchHHHHHHHH
Q 010042 224 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 303 (519)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~V~~~f~~~R~~~p~~f~srl~nkl~Y~~~g~ 303 (519)
+++|+|++|+|+||+|+..++..++ +..|+++|+..++
T Consensus 157 ----------------------------------r~~fl~~~~~G~da~v~~~~~~~~k--------~~~G~~~Y~~~~l 194 (332)
T 2bon_A 157 ----------------------------------QTCFINMATGGFGTRITTETPEKLK--------AALGSVSYIIHGL 194 (332)
T ss_dssp ----------------------------------SCEESSEEEEEEEEEC------------------CCHHHHHHHHHT
T ss_pred ----------------------------------ceEEEEEEeECccHHHHHHhhHHhH--------hcccHHHHHHHHH
Confidence 0279999999999999988765432 3458999999988
Q ss_pred HhhhhcccccCCCCCCCcceEEEEEEecCCcEEEEEeccceeEEEEEcCCCCcCCccCCCCcccccccccCCCCCccCCC
Q 010042 304 TQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWEELHIPRYIRSIVCLNLPSFSGGLDPWGKPFRKKLRERGLTPPYVDDG 383 (519)
Q Consensus 304 k~~~f~~~l~~~~~k~~~~~i~l~v~~~dG~~~~i~lp~~~~~ivvlN~~s~gGG~~~w~~~~~~~~~~~~~~~a~vdDG 383 (519)
+. ++. .+.+ .++|++ ||+ .++. +...++++|++|||||+.+|| .++++||
T Consensus 195 ~~------l~~--~~~~--~~~i~~---dg~--~~~~--~~~~v~v~N~~~~ggg~~i~P-------------~a~~~DG 244 (332)
T 2bon_A 195 MR------MDT--LQPD--RCEIRG---ENF--HWQG--DALVIGIGNGRQAGGGQQLCP-------------NALINDG 244 (332)
T ss_dssp SC------EEE--EECE--EEEEEE---TTE--EEEE--EESEEEEESSSCBTTTBCSCT-------------TCCTTSS
T ss_pred HH------Hhh--CCCe--eEEEEE---CCE--EEEE--EEEEEEEECCCccCCCcccCC-------------CCCCCCC
Confidence 76 321 2332 356666 676 3432 567888999999999999998 4789999
Q ss_pred cEEEEEecchhHHHHHH--hcC---CCccEEEeecEEEEEEccCCCcceeeeecCCcCCCCCCCCCCcEEEEEEeCCeee
Q 010042 384 LLEIVGFRDAWHGLVLL--APN---GHGTRLAQANRVRFEFEKGAADHTFMRIDGEPWKQPLPVDEDTVVVEISHLRQVN 458 (519)
Q Consensus 384 ~LEVv~~~~~~~~~~l~--~~~---~~~vrl~Q~~~v~i~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~i~I~~~~~~~ 458 (519)
+|||++++...+++.++ +.. .+.+++.++++|+|+..+ ++++|+|||++.. .|++|++.+ ++++
T Consensus 245 ~Ldv~iv~~~~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~~----~~~~~iDGE~~~~------~~~~i~v~p-~al~ 313 (332)
T 2bon_A 245 LLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPH----DITFNLDGEPLSG------QNFHIEILP-AALR 313 (332)
T ss_dssp CEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEEEE----EEEEEETTEEEEE------EEEEEEEEE-EEEE
T ss_pred eEEEEEECCHHHHHHHHHHHHcCCCCCcEEEEEeeEEEEEECC----CCeEEecCCCCCC------ceEEEEEEC-CeeE
Confidence 99999999873322221 111 256889999999998865 6899999999875 389999997 4999
Q ss_pred EEeCCC
Q 010042 459 MLATPC 464 (519)
Q Consensus 459 mL~~~~ 464 (519)
++++..
T Consensus 314 vl~p~~ 319 (332)
T 2bon_A 314 CRLPPD 319 (332)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 999864
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.31 E-value=2.1e-11 Score=122.79 Aligned_cols=114 Identities=11% Similarity=-0.013 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhh--hccCcEEEEEcC
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASE--IEKRLRLIVAGG 142 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~--~~~~~~VIV~GG 142 (519)
+++++||+||.++ .....+..+.+.|....+ +.+... .+ ..+. .. ....++.+ ..+...|||+||
T Consensus 5 mkki~ii~np~~~--~~~~~~~~i~~~l~~~g~~v~~~~~---~~-----~~~~-~~-~~~~~~~~~~~~~~D~vi~~GG 72 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TALTTHEMLYRWLCDQGYEVIVEQQ---IA-----HELQ-LK-NVPTGTLAEIGQQADLAVVVGG 72 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHH---HH-----HHTT-CS-SCCEECHHHHHHHCSEEEECSC
T ss_pred CcEEEEEEcCCCH--HHHHHHHHHHHHHHHCCCEEEEecc---hh-----hhcc-cc-cccccchhhcccCCCEEEEEcC
Confidence 4789999999874 345667777777765443 222111 00 0000 00 00000000 123468999999
Q ss_pred chHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCe
Q 010042 143 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE 205 (519)
Q Consensus 143 DGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~ 205 (519)
|||++++++.+... ..|.||| |+||.|+|++. + +. +++++++.+.+++.
T Consensus 73 DGT~l~a~~~~~~~---~~P~lGI-~~Gt~gfla~~-~-~~--------~~~~al~~i~~g~~ 121 (292)
T 2an1_A 73 DGNMLGAARTLARY---DINVIGI-NRGNLGFLTDL-D-PD--------NALQQLSDVLEGRY 121 (292)
T ss_dssp HHHHHHHHHHHTTS---SCEEEEB-CSSSCCSSCCB-C-TT--------SHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHhhcC---CCCEEEE-ECCCcccCCcC-C-HH--------HHHHHHHHHHcCCC
Confidence 99999999999763 2345777 89998888874 5 43 58889999998876
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.20 E-value=4e-11 Score=119.10 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 010042 68 PVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 147 (519)
Q Consensus 68 ~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~ 147 (519)
++.||+||.||.+ +.+++..+.+.|.. +++.. . .+. ...+...||++|||||++
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i~~~l~~---~~~~~-~-~~~--------------------~~~~~D~vv~~GGDGTll 55 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKISKEHEV---IEFGE-A-NAP--------------------GRVTADLIVVVGGDGTVL 55 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHHTTTSEE---EEEEE-S-SSC--------------------SCBCCSEEEEEECHHHHH
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHhcC---Cceec-c-ccc--------------------ccCCCCEEEEEeCcHHHH
Confidence 5899999999987 77788888877762 33322 1 100 012346899999999999
Q ss_pred HHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCee
Q 010042 148 WLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 206 (519)
Q Consensus 148 ~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~ 206 (519)
++++.+.. ..|.+|| ++||.|.|+ .++ + .++.++++.+.+++.+
T Consensus 56 ~~a~~~~~----~~PilGI-n~G~~Gfl~-~~~-~--------~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 56 KAAKKAAD----GTPMVGF-KAGRLGFLT-SYT-L--------DEIDRFLEDLRNWNFR 99 (258)
T ss_dssp HHHTTBCT----TCEEEEE-ESSSCCSSC-CBC-G--------GGHHHHHHHHHTTCCE
T ss_pred HHHHHhCC----CCCEEEE-ECCCCCccC-cCC-H--------HHHHHHHHHHHcCCce
Confidence 99987753 2344777 599996666 465 4 2688999999988754
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.04 E-value=1.8e-09 Score=109.69 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHH--HH-HHHHHHhhhccchhhh---hhccCcEEE
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLH--QL-YVTLEKFKAAGDVFAS---EIEKRLRLI 138 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~--~~-~~~l~~l~~~~d~~a~---~~~~~~~VI 138 (519)
++.++||+||.++ .+...+..+.+.|....+ +.+....... +. .. ...+.........++. ...+...||
T Consensus 4 m~ki~iI~n~~~~--~~~~~~~~l~~~L~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 4 HRSVLLVVHTGRD--EATETARRVEKVLGDNKIALRVLSAEAVD-RGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp -CEEEEEESSSGG--GGSHHHHHHHHHHHTTTCEEEEEC------------------------------------CCCEE
T ss_pred CCEEEEEEeCCCH--HHHHHHHHHHHHHHHCCCEEEEecchhhh-hhcccccccccccccccccccccccccccCCCEEE
Confidence 5789999999986 345667788888766443 2222211110 00 00 0000000000000000 012345799
Q ss_pred EEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCeee
Q 010042 139 VAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQ 207 (519)
Q Consensus 139 V~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~~ 207 (519)
++|||||++.+++.+... ..|.+|| ++||.|.|+. +. + .+++++++.+.+++...
T Consensus 81 ~~GGDGT~l~a~~~~~~~---~~pvlgi-~~G~~gfl~~-~~-~--------~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNA---SIPVLGV-NLGRIGFLAE-AE-A--------EAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEECHHHHHHHHHHHHHH---TCCEEEE-ECSSCCSSCS-EE-G--------GGHHHHHHHHHHTCCEE
T ss_pred EEeCCHHHHHHHHHhccC---CCCEEEE-eCCCCccCcc-cC-H--------HHHHHHHHHHHcCCcEE
Confidence 999999999999998753 2344775 8999999985 43 3 26888999998887543
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.98 E-value=2e-09 Score=107.52 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 010042 68 PVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 147 (519)
Q Consensus 68 ~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~ 147 (519)
++.||+||+ ..+.++++.+.+.|....+ ++.. .+...||++|||||+.
T Consensus 2 ki~ii~n~~---~~~~~~~~~l~~~l~~~g~-~v~~----------------------------~~~D~vv~lGGDGT~l 49 (272)
T 2i2c_A 2 KYMITSKGD---EKSDLLRLNMIAGFGEYDM-EYDD----------------------------VEPEIVISIGGDGTFL 49 (272)
T ss_dssp EEEEEECCS---HHHHHHHHHHHHHHTTSSC-EECS----------------------------SSCSEEEEEESHHHHH
T ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHCCC-EeCC----------------------------CCCCEEEEEcCcHHHH
Confidence 578999963 3556778888888876442 1110 1246799999999999
Q ss_pred HHHHHHhcCCCCCCCC-EEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCee
Q 010042 148 WLLGVVSDLKLPHSPP-VATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 206 (519)
Q Consensus 148 ~Vln~l~~~~~~~~~p-lgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~ 206 (519)
.+++.+... ...+| +|| |+|| |+|...+. + .+++++++.+.+++.+
T Consensus 50 ~aa~~~~~~--~~~~PilGI-n~G~-lgfl~~~~-~--------~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 50 SAFHQYEER--LDEIAFIGI-HTGH-LGFYADWR-P--------AEADKLVKLLAKGEYQ 96 (272)
T ss_dssp HHHHHTGGG--TTTCEEEEE-ESSS-CCSSCCBC-G--------GGHHHHHHHHHTTCCE
T ss_pred HHHHHHhhc--CCCCCEEEE-eCCC-CCcCCcCC-H--------HHHHHHHHHHHcCCCE
Confidence 999988642 01455 776 9999 66877775 4 2688899999998765
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00016 Score=75.65 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=84.4
Q ss_pred ccccccccccCceeecCCc--ccccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cE-EEEeecCchhHHHHH
Q 010042 39 SKILNNYYIPNYILVSGSE--VQRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QV-IDLGEKAPDKVLHQL 113 (519)
Q Consensus 39 ~~~~~~~~ip~~~~~~~~~--~~~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV-~dl~~~~p~~al~~~ 113 (519)
+..|+.=..|.|+-.|.++ ...|. .+++.++||+||.. ......+..+.+.|... .+ +.+.. ..+ +.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~~gi~V~ve~---~~a-~~l 85 (388)
T 3afo_A 13 VNNLRSSSSADFVSPPNSKLQSLIWQ-NPLQNVYITKKPWT--PSTREAMVEFITHLHESYPEVNVIVQP---DVA-EEI 85 (388)
T ss_dssp GGGSCCCCCCEEEC----CCEEEECS-SCCCEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTCEEECCH---HHH-HHH
T ss_pred HhhcCcccCcceEeCcchhheeeEcc-CCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCeEEEEeC---chh-hhh
Confidence 4455665667787777664 23455 45789999999874 45566777777777543 22 11211 111 101
Q ss_pred HHHHHHh-hh----c----cchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCC
Q 010042 114 YVTLEKF-KA----A----GDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKK 184 (519)
Q Consensus 114 ~~~l~~l-~~----~----~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~ 184 (519)
...+..- .. . .............||++|||||+..++..+.... .+|.||| ++||.+-|+. +..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~--vpPiLGI-N~G~lGFLt~-~~~--- 158 (388)
T 3afo_A 86 SQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQ--VPPVLAF-ALGTLGFLSP-FDF--- 158 (388)
T ss_dssp HTTCCSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTSC--CCCEEEE-ECSSCCSSCC-EEG---
T ss_pred hhhccccccccccccccccccchhhcccCCCEEEEEeCcHHHHHHHHHhcccC--CCeEEEE-ECCCcccCCc-CCh---
Confidence 0000000 00 0 0000000123468999999999999998775421 1244666 9999865543 432
Q ss_pred CCCCchHHHHHHHHHHHcCCeeeEeEEEE
Q 010042 185 NPNTDQQAVLSFLEQVKNAKEMQIDSWHI 213 (519)
Q Consensus 185 ~~~~~~~~~~~~l~~i~~a~~~~iD~w~V 213 (519)
.+++++++.+.+++.....+-.+
T Consensus 159 ------~~~~~al~~il~g~~~~~~r~~L 181 (388)
T 3afo_A 159 ------KEHKKVFQEVISSRAKCLHRTRL 181 (388)
T ss_dssp ------GGHHHHHHHHHTTCCEEEEECCE
T ss_pred ------HHHHHHHHHHhcCCceEEEeeEE
Confidence 36888999999997654444433
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=94.06 E-value=0.085 Score=52.58 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=34.7
Q ss_pred cCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHc
Q 010042 133 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 202 (519)
Q Consensus 133 ~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~ 202 (519)
....||++|||||+-.++..+.. . +||--|.+||-+=|+. +.. ++++++++.+.+
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~~~----~-~PilGIN~G~lGFLt~---~~~-------~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKLKR----C-PPIFGINTGRVGLLTH---ASP-------ENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTCSS----C-CCEEEEECSSSCTTCC---BBT-------TBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHhCC----C-CcEEEECCCCCccccc---cCH-------HHHHHHHHHHHh
Confidence 34679999999999888865432 2 6665567775443432 211 245666766654
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=90.13 E-value=0.54 Score=48.53 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=42.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcCCeeeEeEEE
Q 010042 133 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 212 (519)
Q Consensus 133 ~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a~~~~iD~w~ 212 (519)
....||++|||||+-.++..+.. ..+||--|=+| .||+=... +.+++.++|+.+.+++..--.+..
T Consensus 108 ~~DlvI~lGGDGT~L~aa~~~~~----~~~PvlGiN~G-------~LGFLt~~---~~~~~~~~l~~vl~g~~~v~~R~~ 173 (365)
T 3pfn_A 108 QIDFIICLGGDGTLLYASSLFQG----SVPPVMAFHLG-------SLGFLTPF---SFENFQSQVTQVIEGNAAVVLRSR 173 (365)
T ss_dssp TCSEEEEESSTTHHHHHHHHCSS----SCCCEEEEESS-------SCTTTCCE---ESTTHHHHHHHHHHSCCBEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHhcc----CCCCEEEEcCC-------CCccceee---cHHHHHHHHHHHHcCCCeEEEEee
Confidence 34579999999999999887644 24554333444 34543211 123688899999988765444444
Q ss_pred Ee
Q 010042 213 IL 214 (519)
Q Consensus 213 V~ 214 (519)
+.
T Consensus 174 L~ 175 (365)
T 3pfn_A 174 LK 175 (365)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 11
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=77.77 E-value=5.8 Score=40.41 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=57.4
Q ss_pred cc-ccCceeecCCcc-c---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHH
Q 010042 45 YY-IPNYILVSGSEV-Q---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEK 119 (519)
Q Consensus 45 ~~-ip~~~~~~~~~~-~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~ 119 (519)
|. .|+.++...... . .......++++|+..+.. ..+.+++.+.|....+.......|..-++.+.+.++.
T Consensus 8 ~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~ 82 (353)
T 3hl0_A 8 YMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQ-----KGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEA 82 (353)
T ss_dssp CCCCCCCEEECTTGGGGHHHHHHHTTCCCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHH
T ss_pred eecCCceEEECcCHHHHHHHHHHHhCCCEEEEEecCch-----hhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHH
Confidence 44 787777654321 1 111122367888877542 2356777777765433222221222222223333222
Q ss_pred hhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 120 FKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 120 l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
+++ .+...||++|| |++.-+...+... ..+|+..||-
T Consensus 83 ~~~---------~~~D~IIavGG-Gs~iD~aK~iA~~---~~~p~i~IPT 119 (353)
T 3hl0_A 83 YRA---------AGADCVVSLGG-GSTTGLGKAIALR---TDAAQIVIPT 119 (353)
T ss_dssp HHH---------TTCSEEEEEES-HHHHHHHHHHHHH---HCCEEEEEEC
T ss_pred Hhc---------cCCCEEEEeCC-cHHHHHHHHHHhc---cCCCEEEEeC
Confidence 211 23457899998 9999888877542 3578888885
No 12
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=70.64 E-value=12 Score=38.12 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=56.2
Q ss_pred ccCceeecCCcc-c---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHHhhh
Q 010042 47 IPNYILVSGSEV-Q---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKA 122 (519)
Q Consensus 47 ip~~~~~~~~~~-~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~l~~ 122 (519)
.|..++...... . .....-.++++||..+.. ..+.+++.+.|....+.......|..-++.+.+.++.++
T Consensus 13 ~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~- 86 (358)
T 3jzd_A 13 HAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAR- 86 (358)
T ss_dssp CCEEEEESTTGGGGHHHHHHHTTCSCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHH-
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhh-
Confidence 687777654321 1 111122367888877643 235677777776543322222222211222223222211
Q ss_pred ccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 123 AGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 123 ~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
+ .+...||++|| |++.-+...+... ..+|+..||-
T Consensus 87 -------~-~~~D~IIavGG-GsviD~aK~iA~~---~~~p~i~IPT 121 (358)
T 3jzd_A 87 -------E-AGADCAVAVGG-GSTTGLGKAIALE---TGMPIVAIPT 121 (358)
T ss_dssp -------H-HTCSEEEEEES-HHHHHHHHHHHHH---HCCCEEEEEC
T ss_pred -------c-cCCCEEEEeCC-cHHHHHHHHHHhc---cCCCEEEEeC
Confidence 1 23457889998 9999888877542 3578888885
No 13
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=67.55 E-value=10 Score=38.71 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccC-cE--EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QV--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 142 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~-qV--~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GG 142 (519)
.++++|+.++.... .+.+.+.+.|... .+ +.+....+.+.++.+.+.++.+++.+ ..+...||++||
T Consensus 34 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~------~~r~d~iIalGG 103 (368)
T 2gru_A 34 FDQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIALG------ANRRTAIVAVGG 103 (368)
T ss_dssp CSEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHTT------CCTTEEEEEEES
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhcC------CCCCcEEEEECC
Confidence 47899999976642 2566777777543 33 33333223333333333333222111 122456888888
Q ss_pred chHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 143 DGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 143 DGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
|++.-+...+... ....+|+..||-
T Consensus 104 -Gsv~D~ak~~Aa~-~~rgip~i~IPT 128 (368)
T 2gru_A 104 -GLTGNVAGVAAGM-MFRGIALIHVPT 128 (368)
T ss_dssp -HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred -hHHHHHHHHHHHH-hcCCCCEEEECC
Confidence 8999888877632 124688999997
No 14
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=66.78 E-value=12 Score=38.69 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cE--EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 010042 65 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QV--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 140 (519)
Q Consensus 65 ~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV--~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~ 140 (519)
..++++||.++... ..+.+.+.+.|... ++ +.+....+.+.++.+.+.++.+++. ...+...||++
T Consensus 61 ~~~rvlIVtd~~v~----~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~------~~~R~d~IIAv 130 (390)
T 3okf_A 61 AKQKVVIVTNHTVA----PLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEH------NYSRDVVVIAL 130 (390)
T ss_dssp TTCEEEEEEETTTH----HHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHT------TCCTTCEEEEE
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhc------CCCcCcEEEEE
Confidence 45789999997664 23666777766542 22 3332222222233233333322211 01223568888
Q ss_pred cCchHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 141 GGDGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 141 GGDGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
|| |++.-+...+... ....+|+..||-
T Consensus 131 GG-Gsv~D~ak~~Aa~-~~rgip~I~IPT 157 (390)
T 3okf_A 131 GG-GVIGDLVGFAAAC-YQRGVDFIQIPT 157 (390)
T ss_dssp ES-HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred CC-cHHhhHHHHHHHH-hcCCCCEEEeCC
Confidence 88 8988888866421 124688888886
No 15
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=66.06 E-value=12 Score=37.65 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=29.0
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+. .|.+ ..+++--||-=--||++
T Consensus 96 d~LvvIGGdgS~~~a~-~L~~----~~i~vvgiPkTIDNDl~ 132 (320)
T 1pfk_A 96 DALVVIGGDGSYMGAM-RLTE----MGFPCIGLPGTIDNDIK 132 (320)
T ss_dssp CEEEEEECHHHHHHHH-HHHH----TTCCEEEEEBCTTCCCT
T ss_pred CEEEEECCCchHHHHH-HHHh----hCCCEEEEeccccCCCC
Confidence 4699999999987654 3444 25778888999999997
No 16
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=63.76 E-value=26 Score=36.04 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred ccccCceeecCCc-c---cccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHHh
Q 010042 45 YYIPNYILVSGSE-V---QRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKF 120 (519)
Q Consensus 45 ~~ip~~~~~~~~~-~---~~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~l 120 (519)
|.+|..++..... . .... ..++++||..+.+-. ...+.+.+.+.|....++.+....|..-++.+.+.++.+
T Consensus 27 ~~~p~~i~~G~g~l~~l~~~l~--~g~r~liVtd~~~~~--~~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~ 102 (408)
T 1oj7_A 27 LHTPTRILFGKGAIAGLREQIP--HDARVLITYGGGSVK--KTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLV 102 (408)
T ss_dssp EEEEEEEEESTTGGGGHHHHSC--TTCEEEEEECSSHHH--HHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHH
T ss_pred ecCCCeEEECCCHHHHHHHHHh--cCCEEEEEECCchhh--hccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHH
Confidence 5568776664432 1 1222 237899998654321 112567777777533333333222222222233333222
Q ss_pred hhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCC------------------CCCCCCEEEeeC--CCCcchhhccC
Q 010042 121 KAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLK------------------LPHSPPVATVPL--GTGNNIPFSFG 180 (519)
Q Consensus 121 ~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~------------------~~~~~plgiIPl--GTGNDlAR~LG 180 (519)
++ .+...||++|| |++.-+...+...- ....+|+..||- |||-.....-.
T Consensus 103 ~~---------~~~D~IIavGG-GsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSevt~~av 172 (408)
T 1oj7_A 103 RE---------QKVTFLLAVGG-GSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAV 172 (408)
T ss_dssp HH---------HTCCEEEEEES-HHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEE
T ss_pred HH---------cCCCEEEEeCC-chHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHhCCCEE
Confidence 11 13357888888 88888877665421 014578999996 66655554433
Q ss_pred C
Q 010042 181 W 181 (519)
Q Consensus 181 w 181 (519)
+
T Consensus 173 i 173 (408)
T 1oj7_A 173 I 173 (408)
T ss_dssp E
T ss_pred E
Confidence 3
No 17
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=62.72 E-value=72 Score=32.21 Aligned_cols=121 Identities=22% Similarity=0.339 Sum_probs=62.3
Q ss_pred ccccccCceeecCCc----ccccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cE--EEEeecCchhHHHHHH
Q 010042 43 NNYYIPNYILVSGSE----VQRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QV--IDLGEKAPDKVLHQLY 114 (519)
Q Consensus 43 ~~~~ip~~~~~~~~~----~~~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV--~dl~~~~p~~al~~~~ 114 (519)
-.|..|..++..... ....... .++++|+..+.+-...| +++.+.+.|... .+ |+-.+..|. ++.+.
T Consensus 14 ~~~~~p~~i~~G~g~~~~l~~~l~~~-g~~~liVtd~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~~~p~--~~~v~ 88 (371)
T 1o2d_A 14 WEFYMPTDVFFGEKILEKRGNIIDLL-GKRALVVTGKSSSKKNG--SLDDLKKLLDETEISYEIFDEVEENPS--FDNVM 88 (371)
T ss_dssp CCCCCCCEEEESTTHHHHHGGGGGGT-CSEEEEEEESSGGGTSS--HHHHHHHHHHHTTCEEEEEEEECSSCB--HHHHH
T ss_pred EEecCCceEEECcCHHHHHHHHHHHc-CCEEEEEECchHHhhcc--HHHHHHHHHHHcCCeEEEeCCccCCCC--HHHHH
Confidence 356667777665432 1111112 27899999875533222 455555555432 22 332222222 22233
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCC---------------CCCCEEEee--CCCCcchhh
Q 010042 115 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLP---------------HSPPVATVP--LGTGNNIPF 177 (519)
Q Consensus 115 ~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~---------------~~~plgiIP--lGTGNDlAR 177 (519)
+.++.++ + .+...||++|| |++.-+...+...-.. ..+|+..|| .|||-....
T Consensus 89 ~~~~~~~--------~-~~~d~IIavGG-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse~t~ 158 (371)
T 1o2d_A 89 KAVERYR--------N-DSFDFVVGLGG-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTP 158 (371)
T ss_dssp HHHHHHT--------T-SCCSEEEEEES-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCC
T ss_pred HHHHHHH--------h-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhhhcC
Confidence 3332221 1 13456888888 8888887766542111 467899899 456655544
Q ss_pred c
Q 010042 178 S 178 (519)
Q Consensus 178 ~ 178 (519)
.
T Consensus 159 ~ 159 (371)
T 1o2d_A 159 Y 159 (371)
T ss_dssp E
T ss_pred c
Confidence 3
No 18
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=61.96 E-value=10 Score=39.06 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=60.5
Q ss_pred cccccccCceeecCCcc-c---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhcc-Cc-EEEEeecCchhHHHHHHH
Q 010042 42 LNNYYIPNYILVSGSEV-Q---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNE-NQ-VIDLGEKAPDKVLHQLYV 115 (519)
Q Consensus 42 ~~~~~ip~~~~~~~~~~-~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~-~q-V~dl~~~~p~~al~~~~~ 115 (519)
.+.|..|..++...... . ...... ++++||..+..- ..+.+.+.+.|.. .. +|+.....|.. +.+.+
T Consensus 25 ~~~f~~p~~i~~G~g~l~~l~~~l~~~g-~r~liVtd~~~~----~~~~~~v~~~L~~g~~~~~~~~~~~p~~--~~v~~ 97 (387)
T 3uhj_A 25 ARAFGGPNKYIQRAGEIDKLAAYLAPLG-KRALVLIDRVLF----DALSERIGKSCGDSLDIRFERFGGECCT--SEIER 97 (387)
T ss_dssp EEEEECCSEEEECTTTTTTTHHHHGGGC-SEEEEEECTTTH----HHHHHHC------CCEEEEEECCSSCSH--HHHHH
T ss_pred hhHhcCCCeEEEcCCHHHHHHHHHHHcC-CEEEEEECchHH----HHHHHHHHHHHHcCCCeEEEEcCCCCCH--HHHHH
Confidence 57788898888765321 1 111112 789999886653 2366667777764 12 23332222221 22222
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC--CCCcchh
Q 010042 116 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 176 (519)
Q Consensus 116 ~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl--GTGNDlA 176 (519)
.++.++ + .+...||++|| |++.-+...+.-+ ..+|+..||- |||--..
T Consensus 98 ~~~~~~--------~-~~~d~IIavGG-Gs~~D~AK~iA~~---~~~p~i~IPTTagtgSevt 147 (387)
T 3uhj_A 98 VRKVAI--------E-HGSDILVGVGG-GKTADTAKIVAID---TGARIVIAPTIASTDAPCS 147 (387)
T ss_dssp HHHHHH--------H-HTCSEEEEESS-HHHHHHHHHHHHH---TTCEEEECCSSCCCSTTTS
T ss_pred HHHHHh--------h-cCCCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEecCcccCCcccC
Confidence 222211 1 13457888888 9999888877643 3678888886 4443333
No 19
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=59.83 E-value=13 Score=37.47 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=28.8
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+. .|.+ ..+++--||-==-||++
T Consensus 95 d~LvvIGGdgS~~~a~-~L~~----~~i~vvgiPkTIDNDl~ 131 (319)
T 1zxx_A 95 DAVVVIGGDGSYHGAL-QLTR----HGFNSIGLPGTIDNDIP 131 (319)
T ss_dssp CEEEEEECHHHHHHHH-HHHH----TTCCEEEEEEETTCCCT
T ss_pred CEEEEECCchHHHHHH-HHHH----hCCCEEEEeecccCCCC
Confidence 4699999999987654 3444 25778888999999997
No 20
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=56.67 E-value=40 Score=34.36 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=62.0
Q ss_pred cccccCceeecCCcc----cccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCc----EEEEeecCchhHHHHHHH
Q 010042 44 NYYIPNYILVSGSEV----QRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLYV 115 (519)
Q Consensus 44 ~~~ip~~~~~~~~~~----~~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~q----V~dl~~~~p~~al~~~~~ 115 (519)
.|.+|+.++...... ........++++|+..+.- ....+.+.+.+.|.... +|+-.+..|. ++.+.+
T Consensus 5 ~f~~p~~i~~G~g~~~~l~~~~~~~g~~~~liVtd~~~---~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~--~~~v~~ 79 (383)
T 3ox4_A 5 TFYIPFVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFM---NKSGVVKQVADLLKAQGINSAVYDGVMPNPT--VTAVLE 79 (383)
T ss_dssp EEECCSEEEESTTHHHHHHHTTTTSCCCEEEEEEEHHH---HHTTHHHHHHHHHHTTTCEEEEEEEECSSCB--HHHHHH
T ss_pred eecCCCeEEECCCHHHHHHHHHHHcCCCEEEEEECCch---hhCchHHHHHHHHHHcCCeEEEECCccCCCC--HHHHHH
Confidence 467788877654321 1222223478888887532 11225666777775432 2332222222 222333
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCC---------------CCCCCCEEEeeC--CCCcchh
Q 010042 116 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLK---------------LPHSPPVATVPL--GTGNNIP 176 (519)
Q Consensus 116 ~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~---------------~~~~~plgiIPl--GTGNDlA 176 (519)
.++.++ + .+...||++|| |++.-+...+.-.- ....+|+..||- |||-...
T Consensus 80 ~~~~~~--------~-~~~D~IIavGG-Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe~t 147 (383)
T 3ox4_A 80 GLKILK--------D-NNSDFVISLGG-GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEMT 147 (383)
T ss_dssp HHHHHH--------H-HTCSEEEEEES-HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTTTC
T ss_pred HHHHHH--------h-cCcCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhhcC
Confidence 332221 1 13457899999 88887777653210 023678999996 5554444
No 21
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=56.21 E-value=17 Score=37.21 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 010042 67 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 142 (519)
Q Consensus 67 ~~vlvivNPkSG~~~g~~~l~~~~~~L~~~q--V--~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GG 142 (519)
++++|+.++.... +...+.+.|.... + +.+....+.+.++.+.+.++.+++. ...+...||++||
T Consensus 44 ~rvlIVtd~~v~~-----~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~------~~~r~d~IIavGG 112 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRI------GIGRKDALVSLGG 112 (368)
T ss_dssp SEEEEEECGGGHH-----HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHH------TCCTTCEEEEEES
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHc------CCCCCcEEEEECC
Confidence 7899999876532 3556666665432 2 2232222322233233333222211 0123456888888
Q ss_pred chHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 143 DGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 143 DGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
|++.-+...+... ....+|+..||-
T Consensus 113 -Gsv~D~ak~~Aa~-~~rgip~i~IPT 137 (368)
T 3qbe_A 113 -GAATDVAGFAAAT-WLRGVSIVHLPT 137 (368)
T ss_dssp -HHHHHHHHHHHHH-GGGCCEEEEEEC
T ss_pred -hHHHHHHHHHHHH-hccCCcEEEECC
Confidence 8888888766531 124678888885
No 22
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=54.01 E-value=20 Score=36.02 Aligned_cols=43 Identities=35% Similarity=0.597 Sum_probs=31.9
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchh---hccCCC
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP---FSFGWG 182 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlA---R~LGwg 182 (519)
..++++|||||..-+. .+.+ ..+++--||-=--||++ .++|+.
T Consensus 95 d~L~~IGGdgS~~~a~-~l~~----~~i~vigiPkTIDNDl~~td~t~Gfd 140 (319)
T 4a3s_A 95 EGLVVIGGDGSYMGAK-KLTE----HGFPCVGVPGTIDNDIPGTDFTIGFD 140 (319)
T ss_dssp CEEEEEECTTHHHHHH-HHHH----TTCCEEEEEEETTCCCTTCSCCEEHH
T ss_pred CEEEEeCCcHHHHHHH-HHhc----cCCcEEEeeccccCCCCCCCCCCCHH
Confidence 4699999999987654 4555 35777888999999997 355554
No 23
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=53.07 E-value=9.3 Score=39.36 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=30.1
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC--CCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl--GTGNDlA 176 (519)
..||++|| |++.-+...+... ....+|+..||- ||+.|-+
T Consensus 107 d~iIalGG-Gsv~D~ak~~Aa~-~~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 107 TVVIALGG-GVIGDLTGFVAST-YMRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp CEEEEEES-HHHHHHHHHHHHH-GGGCCEEEEEECSHHHHHTTT
T ss_pred CEEEEECC-cHHHHHHHHHHHH-hcCCCCEEEECCchhhhhhcC
Confidence 56888887 8888888776531 124689999998 8998884
No 24
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=50.93 E-value=11 Score=38.04 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE--EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 143 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV--~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGD 143 (519)
.++++|+.++..... +.+.+.+.|....+ +.+....+.+.++.+.+.++.+++. ...+...||++||
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~------~~~r~d~iIavGG- 94 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEM------QLNRHSLMIALGG- 94 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHT------TCCTTCEEEEEES-
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhc------CCCCCceEEEECC-
Confidence 478999998765432 46677777754333 3333222322233333333322211 0123356888887
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 144 GTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 144 GTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
|++.-+...+... ....+|+..||-
T Consensus 95 Gsv~D~ak~~A~~-~~rgip~i~IPT 119 (343)
T 3clh_A 95 GVISDMVGFASSI-YFRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHH-hccCCCEEEeCC
Confidence 8888888776522 124688889994
No 25
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=49.90 E-value=28 Score=35.11 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 010042 66 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 144 (519)
Q Consensus 66 ~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDG 144 (519)
.++++|+.++... . +.+.+.+.|. ..+ +.+....+...++.+.+.++.+++. ...+...||++|| |
T Consensus 28 ~~kvliVtd~~v~----~-~~~~v~~~L~-~~~~~~~~~ge~~~~~~~v~~~~~~~~~~------~~~r~d~IIavGG-G 94 (348)
T 1ujn_A 28 AGPAALLFDRRVE----G-FAQEVAKALG-VRHLLGLPGGEAAKSLEVYGKVLSWLAEK------GLPRNATLLVVGG-G 94 (348)
T ss_dssp SSCEEEEEEGGGH----H-HHHHHHHHHT-CCCEEEECCSGGGSSHHHHHHHHHHHHHH------TCCTTCEEEEEES-H
T ss_pred CCEEEEEECCcHH----H-HHHHHHHHhc-cCeEEEECCCCCCCCHHHHHHHHHHHHHc------CCCCCCEEEEECC-c
Confidence 4789999986542 3 6777777775 222 3333222322233333333222211 0122356888887 8
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 145 TASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 145 TV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
++.-+...+... ....+|+..||-
T Consensus 95 sv~D~ak~~A~~-~~rgip~i~IPT 118 (348)
T 1ujn_A 95 TLTDLGGFVAAT-YLRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHHHHHHH-hccCCCEEEecC
Confidence 888888877532 124688899995
No 26
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=49.52 E-value=87 Score=28.71 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=49.1
Q ss_pred ccCCCCCCe-EEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEE
Q 010042 60 RSSLIPSCP-VLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRL 137 (519)
Q Consensus 60 ~~~~~~~~~-vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~V 137 (519)
..+.+.++| |.||.=..| -..+.++....|....+ |++.........+++..-.+... +..-.+.|
T Consensus 5 ~~~~~~m~~~V~IimGS~S----D~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~--------~~g~~ViI 72 (174)
T 3kuu_A 5 LNSAYAAGVKIAIVMGSKS----DWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAE--------ANGLHVII 72 (174)
T ss_dssp -CCSSCCCCCEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTT--------TTTCSEEE
T ss_pred ccccccCCCcEEEEECcHH----HHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHH--------hCCCcEEE
Confidence 345556665 556654333 34455565556655444 67654322222221211111100 00113568
Q ss_pred EEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCC
Q 010042 138 IVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGT 171 (519)
Q Consensus 138 IV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGT 171 (519)
.++||.+-+--|+.++.. .|.||+ |.-+
T Consensus 73 a~AG~aa~LpgvvA~~t~-----~PVIgV-P~~~ 100 (174)
T 3kuu_A 73 AGNGGAAHLPGMLAAKTL-----VPVLGV-PVQS 100 (174)
T ss_dssp EEEESSCCHHHHHHHTCS-----SCEEEE-EECC
T ss_pred EECChhhhhHHHHHhccC-----CCEEEe-eCCC
Confidence 899999999999988754 456676 5443
No 27
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=46.47 E-value=35 Score=34.73 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=55.8
Q ss_pred cccCceeecCCcc--c---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEEeecCchhHHHHHHHHHHHh
Q 010042 46 YIPNYILVSGSEV--Q---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKF 120 (519)
Q Consensus 46 ~ip~~~~~~~~~~--~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV~dl~~~~p~~al~~~~~~l~~l 120 (519)
..|..++...... . .......++++|+..+.. ..+.+++.+.|....+|+-.+..|. ++.+.+.++.+
T Consensus 12 ~~P~~i~~G~g~~~~~l~~~l~~~g~~rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~--~~~v~~~~~~~ 84 (364)
T 3iv7_A 12 TLPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVP--IEVAERARAVA 84 (364)
T ss_dssp ECCEEEEEETTCHHHHHHHHHHHHTCSSEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCB--HHHHHHHHHHH
T ss_pred cCCceEEEeCChHHHHHHHHHHHcCCCEEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCC--HHHHHHHHHHH
Confidence 3677766654321 1 111112367888877542 2345667777764434442222222 22233332222
Q ss_pred hhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 121 KAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 121 ~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
+ + .+...||++|| |++.-+...+... ..+|+..||-
T Consensus 85 ~--------~-~~~D~IIavGG-Gs~iD~aK~iA~~---~~~P~i~IPT 120 (364)
T 3iv7_A 85 T--------D-NEIDLLVCVGG-GSTIGLAKAIAMT---TALPIVAIPT 120 (364)
T ss_dssp H--------H-TTCCEEEEEES-HHHHHHHHHHHHH---HCCCEEEEEC
T ss_pred H--------h-cCCCEEEEeCC-cHHHHHHHHHHhc---cCCCEEEEcC
Confidence 1 1 23457889998 9998888876542 3678888885
No 28
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=46.11 E-value=39 Score=34.07 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred ccccccCceeecCCc-cc---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccCc--E-EEEeecC-chhHHHHHH
Q 010042 43 NNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V-IDLGEKA-PDKVLHQLY 114 (519)
Q Consensus 43 ~~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~q--V-~dl~~~~-p~~al~~~~ 114 (519)
..|.+|..++..... .. ..... .++++|+..+.+-. .+.+.+.+.|.... + +...... +.+.++++.
T Consensus 5 ~~~~~p~~i~~G~g~~~~l~~~l~~~-g~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~ 79 (370)
T 1jq5_A 5 RVFISPAKYVQGKNVITKIANYLEGI-GNKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIA 79 (370)
T ss_dssp BCCCCCSEEEEETTGGGGHHHHHTTT-CSEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHH
T ss_pred eEecCCCeEEECcCHHHHHHHHHHHc-CCeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHH
Confidence 456778876664432 11 11222 27899999865532 35666666665432 2 2222222 222332222
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC--CCCcchh
Q 010042 115 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 176 (519)
Q Consensus 115 ~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl--GTGNDlA 176 (519)
..+ + + .+...||++|| |++.-+...+.-. ..+|+..||- |||--..
T Consensus 80 ~~~---~--------~-~~~d~IIavGG-Gsv~D~aK~iA~~---~~~p~i~IPTTa~tgSevt 127 (370)
T 1jq5_A 80 NIA---R--------K-AEAAIVIGVGG-GKTLDTAKAVADE---LDAYIVIVPTAASTDAPTS 127 (370)
T ss_dssp HHH---H--------H-TTCSEEEEEES-HHHHHHHHHHHHH---HTCEEEEEESSCCSSCTTC
T ss_pred HHH---H--------h-cCCCEEEEeCC-hHHHHHHHHHHHh---cCCCEEEeccccCCCcccC
Confidence 221 1 1 13357888888 8888888877642 3678888996 4443333
No 29
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=45.78 E-value=94 Score=31.45 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred cccccCceeecCCc-cc---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cEEEEeecCchhHHHHHHHHH
Q 010042 44 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTL 117 (519)
Q Consensus 44 ~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV~dl~~~~p~~al~~~~~~l 117 (519)
.|.+|..++..... .. .......++++|+..+..-... ..+.+.+.+.|... .+..+....+..-++.+.+.+
T Consensus 7 ~~~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~~-~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 85 (387)
T 3bfj_A 7 DYLVPNVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIK-DGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGL 85 (387)
T ss_dssp EEECCSEEEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--C-CSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHH
T ss_pred eeeCCCeEEECCCHHHHHHHHHHHcCCCEEEEEECcchhhcc-chHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 46678877665432 11 1111123789999887654330 01344555555332 232222212222222233333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcC--------------C-CCCCCCEEEeeC--CCCcchhhccC
Q 010042 118 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL--------------K-LPHSPPVATVPL--GTGNNIPFSFG 180 (519)
Q Consensus 118 ~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~--------------~-~~~~~plgiIPl--GTGNDlAR~LG 180 (519)
+.+++ .+...||++|| |++.-+...+... + ....+|+..||- |||--....-.
T Consensus 86 ~~~~~---------~~~d~IIavGG-Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSevt~~av 155 (387)
T 3bfj_A 86 AVFRR---------EQCDIIVTVGG-GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASEVTRHCV 155 (387)
T ss_dssp HHHHH---------TTCCEEEEEES-HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGGGCSEEE
T ss_pred HHHHh---------cCCCEEEEeCC-cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccccccCcEE
Confidence 22221 12356888888 8888777765431 0 014678888995 66544444333
No 30
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=45.58 E-value=15 Score=39.15 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=28.8
Q ss_pred cEEEEEcCchHHHHHH---HHHhcCCCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLL---GVVSDLKLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vl---n~l~~~~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+. ..+.+.+ ..+++--||-==-||++
T Consensus 191 d~LvvIGGdgS~~~A~~L~e~~~~~g--~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 191 NILFTVGGDGTQRGALVISQEAKRRG--VDISVFGVPKTIDNDLS 233 (487)
T ss_dssp SEEEEEECHHHHHHHHHHHHHHHHHT--CCCEEEEEECCTTSSCC
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHhC--CCceEEeccccccCCCC
Confidence 3699999999987443 2322221 35778888999999996
No 31
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.87 E-value=49 Score=34.70 Aligned_cols=119 Identities=10% Similarity=0.022 Sum_probs=63.9
Q ss_pred cccccccccccCceeecCCc-cc---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cE-EEEeecCchhHH
Q 010042 38 KSKILNNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QV-IDLGEKAPDKVL 110 (519)
Q Consensus 38 ~~~~~~~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV-~dl~~~~p~~al 110 (519)
.+.+...|.+|..++..... .. .......++++|+..+.+-. .+.+.+.+.|... ++ +.+..+.|..
T Consensus 59 ~~~~~~~f~~p~~i~~G~g~l~~l~~~l~~~g~~rvlIVtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~ge~~~-- 132 (450)
T 1ta9_A 59 EESKDRIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWN----ICANKIVDSLSQNGMTVTKLVFGGEASL-- 132 (450)
T ss_dssp CCCSSEEEECCSEEEEETTGGGGHHHHHTTTCSSEEEEEEEHHHHH----HTHHHHHHHHHHTTCEEEEEEECSCCCH--
T ss_pred cCccceEEeCCceEEECcCHHHHHHHHHHhcCCCEEEEEECccHHH----HHHHHHHHHHHHCCCeEEEEeeCCCCCH--
Confidence 45566778888877665432 11 11222234899998765532 2455666666432 22 2222222222
Q ss_pred HHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC--CCCcchh
Q 010042 111 HQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 176 (519)
Q Consensus 111 ~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl--GTGNDlA 176 (519)
+.+.+..+ ++.+ +...||++|| |++.-+...+.-. ..+|+..||- |||--..
T Consensus 133 ~~v~~~~~--------~~~~--~~D~IIAvGG-GSviD~AK~iA~~---~giP~I~IPTTAgtgSevt 186 (450)
T 1ta9_A 133 VELDKLRK--------QCPD--DTQVIIGVGG-GKTMDSAKYIAHS---MNLPSIICPTTASSDAATS 186 (450)
T ss_dssp HHHHHHHT--------TSCT--TCCEEEEEES-HHHHHHHHHHHHH---TTCCEEEEESSCSCSCTTC
T ss_pred HHHHHHHH--------HHhh--CCCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEEeCCCccCcccC
Confidence 11222211 1222 3456888888 8988888877643 4688999995 4443333
No 32
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=41.01 E-value=13 Score=33.89 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=34.2
Q ss_pred EEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCCcchhhccCCCCCCCCCchHHHHHHHHHHHcC
Q 010042 138 IVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 203 (519)
Q Consensus 138 IV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTGNDlAR~LGwg~~~~~~~~~~~~~~l~~i~~a 203 (519)
..+|||-|- +++.-+...-+..+|-+-+|=+|| ||+++..+-.. ......++..+++.+...
T Consensus 56 ~Gi~G~tt~-~~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~~~~~--~~~~~~~l~~ii~~~~~~ 117 (209)
T 4hf7_A 56 RGISGQTSY-QFLLRFREDVINLSPALVVINAGT-NDVAENTGAYN--EDYTFGNIASMAELAKAN 117 (209)
T ss_dssp EECTTCCHH-HHHHHHHHHTGGGCCSEEEECCCH-HHHTTSSSSCC--HHHHHHHHHHHHHHHHHT
T ss_pred eccCcccHH-HHHHHHHHHHHhcCCCEEEEEeCC-CcCcccccccc--HHHHHHHHHHhhHHHhcc
Confidence 357898664 444444321123467888998997 99987654321 000112455566665543
No 33
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=39.21 E-value=23 Score=35.64 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=45.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHhccCc-E--EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 010042 67 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ-V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 143 (519)
Q Consensus 67 ~~vlvivNPkSG~~~g~~~l~~~~~~L~~~q-V--~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGD 143 (519)
++++|+.++... ..+.+.+.+.| ... + +.+....+...++.+.+.++.+++.+ ..+...||++||
T Consensus 32 ~~~liVtd~~~~----~~~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~------~~r~d~iIavGG- 99 (354)
T 1xah_A 32 DQSFLLIDEYVN----QYFANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSHH------VTRNTAIIAVGG- 99 (354)
T ss_dssp SCEEEEEEHHHH----HHHHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTTC------CCTTCEEEEEES-
T ss_pred CeEEEEECCcHH----HHHHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcC------CCCCceEEEECC-
Confidence 789999885432 22566666666 332 3 22322222222333333333222110 112256888888
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 144 GTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 144 GTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
|++.-+...+... ....+|+..||-
T Consensus 100 Gsv~D~ak~vA~~-~~rgip~i~IPT 124 (354)
T 1xah_A 100 GATGDFAGFVAAT-LLRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHH-hccCCCEEEECC
Confidence 8888888877532 125688888896
No 34
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=37.74 E-value=46 Score=33.35 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=57.5
Q ss_pred cccccCceeecCCc-cc---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cE--EEEeecCchhHHHHHHH
Q 010042 44 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QV--IDLGEKAPDKVLHQLYV 115 (519)
Q Consensus 44 ~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV--~dl~~~~p~~al~~~~~ 115 (519)
.|..|..++..... .. .......++++|+..+.+-. .+.+.+.+.|... .+ |+. ...|. ++.+.+
T Consensus 8 ~~~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~-~~~~~--~~~v~~ 80 (354)
T 3ce9_A 8 RIAIPLILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVET-VKNID--FDEIGT 80 (354)
T ss_dssp CCCCCSEEEEESSCGGGHHHHHGGGTCSEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEE-ECCCB--HHHHHH
T ss_pred EEeCCcEEEECCCHHHHHHHHHHhcCCCeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEec-CCCCC--HHHHHH
Confidence 45667766654432 11 11111236899999865532 3556677766532 23 332 22332 222222
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 116 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 116 ~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
. +.++ + .+...||++|| |++.-+...+.-. ..+|+..||-=.|
T Consensus 81 ~-~~~~--------~-~~~d~IIavGG-Gsv~D~aK~vA~~---~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 81 N-AFKI--------P-AEVDALIGIGG-GKAIDAVKYMAFL---RKLPFISVPTSTS 123 (354)
T ss_dssp H-HTTS--------C-TTCCEEEEEES-HHHHHHHHHHHHH---HTCCEEEEESCCS
T ss_pred H-HHhh--------h-cCCCEEEEECC-hHHHHHHHHHHhh---cCCCEEEecCccc
Confidence 2 2211 1 13356788887 8888888877532 3688999996333
No 35
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=37.35 E-value=1.3e+02 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=23.7
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
+.|.++||.+-+--|+.++.. .|.||+ |.-++
T Consensus 69 ViIa~AG~aa~LpgvvA~~t~-----~PVIgV-P~~~~ 100 (170)
T 1xmp_A 69 VIIAGAGGAAHLPGMVAAKTN-----LPVIGV-PVQSK 100 (170)
T ss_dssp EEEEEEESSCCHHHHHHTTCC-----SCEEEE-EECCT
T ss_pred EEEEECCchhhhHHHHHhccC-----CCEEEe-eCCCC
Confidence 568899999999999987643 455665 65554
No 36
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=36.96 E-value=73 Score=31.08 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=23.9
Q ss_pred hhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeC
Q 010042 126 VFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 169 (519)
Q Consensus 126 ~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPl 169 (519)
+++.-......+|..|| +|+.|++- ...|.-+||+
T Consensus 218 ~m~~~m~~aDlvI~~gG-~T~~E~~~--------~g~P~i~ip~ 252 (282)
T 3hbm_A 218 NIAKLMNESNKLIISAS-SLVNEALL--------LKANFKAICY 252 (282)
T ss_dssp CHHHHHHTEEEEEEESS-HHHHHHHH--------TTCCEEEECC
T ss_pred HHHHHHHHCCEEEECCc-HHHHHHHH--------cCCCEEEEeC
Confidence 44444445566788899 99999873 2567777885
No 37
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=36.03 E-value=33 Score=37.12 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=31.4
Q ss_pred cEEEEEcCchHHHHHHH---HHhcCCCCCCCCEEEeeCCCCcchh-----hccCCC
Q 010042 135 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP-----FSFGWG 182 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln---~l~~~~~~~~~plgiIPlGTGNDlA-----R~LGwg 182 (519)
..+|++|||||..-+.. .+.+. ...+++--||-==-||++ .++|..
T Consensus 168 d~LvvIGGdgS~~~A~~L~e~~~~~--~~~i~vIGiPkTIDNDl~~t~id~tiGFd 221 (555)
T 2f48_A 168 NAIIIIGGDDSNTNAAILAEYFKKN--GENIQVIGVPKTIDADLRNDHIEISFGFD 221 (555)
T ss_dssp SEEEEEESHHHHHHHHHHHHHHHHT--TCCCEEEEEEEETTCCCCCSSCCCCEEHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHHh--CCCCcEEEeccccCCCCCCCcCCCCCChh
Confidence 36999999999765432 22221 235788888999999995 355554
No 38
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=34.91 E-value=1.6e+02 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=24.5
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
+.|.++||.+-+--|+.++.. .|.||+ |.-++
T Consensus 61 ViIa~AG~aa~LpgvvA~~t~-----~PVIgV-P~~~~ 92 (163)
T 3ors_A 61 IIIAGAGGAAHLPGMVASLTT-----LPVIGV-PIETK 92 (163)
T ss_dssp EEEEEEESSCCHHHHHHHHCS-----SCEEEE-EECCT
T ss_pred EEEEECCchhhhHHHHHhccC-----CCEEEe-eCCCC
Confidence 568899999999999998854 355665 66565
No 39
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=34.75 E-value=2.6e+02 Score=25.32 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=45.8
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 010042 69 VLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 147 (519)
Q Consensus 69 vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~ 147 (519)
|.||.= +..-..+.++....|....+ |++.........+++..-++....+ .-.+.|.++||.+-+-
T Consensus 8 V~Iimg----S~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~--------g~~ViIa~AG~aa~Lp 75 (166)
T 3oow_A 8 VGVIMG----SKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKER--------GLKVIIAGAGGAAHLP 75 (166)
T ss_dssp EEEEES----SGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTT--------TCCEEEEEECSSCCHH
T ss_pred EEEEEC----cHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhC--------CCcEEEEECCcchhhH
Confidence 555543 33334556666666655554 7765532222222222222111100 1135688999999999
Q ss_pred HHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 148 WLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 148 ~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
-|+.++.. .|.||+ |.-++
T Consensus 76 gvvA~~t~-----~PVIgV-P~~~~ 94 (166)
T 3oow_A 76 GMVAAKTT-----LPVLGV-PVKSS 94 (166)
T ss_dssp HHHHHTCS-----SCEEEE-ECCCT
T ss_pred HHHHhccC-----CCEEEe-ecCcC
Confidence 99988753 355665 76555
No 40
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=33.41 E-value=46 Score=37.46 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.8
Q ss_pred cEEEEEcCchHHHHHHHH---HhcCCCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~---l~~~~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+... ....+ ...+++--||-=--||++
T Consensus 491 d~LvvIGGdgS~~~a~~L~~~~~~~~-~~~i~vvgiPkTIDNDl~ 534 (762)
T 3o8l_A 491 QGLVIIGGFEAYTGGLELMEGRKQFD-ELCIPFVVIPATVSNNVP 534 (762)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHCS-TTCSCEEEEEBCTTCCCT
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhcc-ccCCCEEeeccccCCCCC
Confidence 359999999998765432 11111 125788889999999997
No 41
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=32.86 E-value=2.9e+02 Score=25.22 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 010042 69 VLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 147 (519)
Q Consensus 69 vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~ 147 (519)
|.||.=+.| -..+.+.....|....+ |++.........+++..-.+.... ..-.+.|.++||.|-+-
T Consensus 15 V~IimGS~S----D~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~--------~g~~ViIa~AG~aahLp 82 (173)
T 4grd_A 15 VGVLMGSSS----DWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARE--------RGLRAIIAGAGGAAHLP 82 (173)
T ss_dssp EEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTT--------TTCSEEEEEEESSCCHH
T ss_pred EEEEeCcHh----HHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHh--------cCCeEEEEeccccccch
Confidence 666664444 34455555556655555 776553322222222111111110 01124677899999999
Q ss_pred HHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 148 WLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 148 ~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
-|+.++.. .|.||+ |.-++
T Consensus 83 gvvA~~t~-----~PVIgV-Pv~~~ 101 (173)
T 4grd_A 83 GMLAAKTT-----VPVLGV-PVASK 101 (173)
T ss_dssp HHHHHHCC-----SCEEEE-EECCT
T ss_pred hhheecCC-----CCEEEE-EcCCC
Confidence 99998754 466666 76544
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=32.46 E-value=2.9e+02 Score=25.41 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcC
Q 010042 78 GGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL 156 (519)
Q Consensus 78 G~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~ 156 (519)
|+..-..+.+.....|....+ |++.........+++..-.+... +..-.+.|.++||.+-+--|+.++..
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~--------~~g~~ViIa~AG~aa~LpgvvA~~t~- 91 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAE--------ERGIEVIIAGAGGAAHLPGMVASITH- 91 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTT--------TTTCCEEEEEEESSCCHHHHHHHHCS-
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHH--------hCCCcEEEEecCcccccHHHHHhccC-
Confidence 444444556666666655554 77655322221111211111100 00113568899999999999998854
Q ss_pred CCCCCCCEEEeeCCCC
Q 010042 157 KLPHSPPVATVPLGTG 172 (519)
Q Consensus 157 ~~~~~~plgiIPlGTG 172 (519)
.|.||+ |.-++
T Consensus 92 ----~PVIgV-P~~~~ 102 (183)
T 1o4v_A 92 ----LPVIGV-PVKTS 102 (183)
T ss_dssp ----SCEEEE-EECCT
T ss_pred ----CCEEEe-eCCCC
Confidence 355665 66554
No 43
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=32.41 E-value=55 Score=34.13 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=27.7
Q ss_pred cEEEEEcCchHHHHHHHHHhcC--CCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~--~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+.. |.+. +....+++--||-==-||++
T Consensus 106 d~Lv~IGGdgS~~~A~~-L~~~~~~~g~~i~vIGiPkTIDNDl~ 148 (419)
T 3hno_A 106 GYFFYNGGGDSADTCLK-VSQLSGTLGYPIQAIHVPKTVDNDLP 148 (419)
T ss_dssp EEEEEEESHHHHHHHHH-HHHHHHHTTCCCEEEEEECCTTCCCS
T ss_pred CEEEEeCCchHHHHHHH-HHHHHHHhCCCccEEEecccccCCCc
Confidence 35999999999765443 2221 01235777778999999995
No 44
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=31.54 E-value=2.5e+02 Score=28.49 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=56.4
Q ss_pred ccccccccCceeecCCcc-c---ccCCC-C--CCeEEEEEcCCCCCCChhhHHHHHHHHhccCcE--EEEeecCchhHHH
Q 010042 41 ILNNYYIPNYILVSGSEV-Q---RSSLI-P--SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV--IDLGEKAPDKVLH 111 (519)
Q Consensus 41 ~~~~~~ip~~~~~~~~~~-~---~~~~~-~--~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV--~dl~~~~p~~al~ 111 (519)
..+.|..|+.++...... . ..... . .++++||..+.-- ...+...++. ....+ |+-.+..|. .+
T Consensus 21 ~~~~f~~p~~i~~G~g~l~~l~~~l~~~g~~~~~~~liVtd~~~~---~~~l~~~L~~--~g~~~~~f~~v~~~pt--~~ 93 (375)
T 3rf7_A 21 SFKNFKCVPKMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQ---HKPLAARVPN--KAHDLVIYVNVDDEPT--TV 93 (375)
T ss_dssp TSCCCCCCSCEEESTTGGGGHHHHHHTTCCSTTCCEEEEEEGGGT---TSHHHHHSCC--CTTSEEEEECCSSCCB--HH
T ss_pred chhhhcCCCeEEEcCCHHHHHHHHHHHhcccCCCeEEEEECchhh---hhHHHHHHHh--cCCeEEEEeCCCCCCC--HH
Confidence 457899999888765431 1 11111 1 3678888875432 1223333221 12233 332222232 22
Q ss_pred HHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCC---------------CCCCCCEEEeeC
Q 010042 112 QLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLK---------------LPHSPPVATVPL 169 (519)
Q Consensus 112 ~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~---------------~~~~~plgiIPl 169 (519)
.+.+.++.+++.+ ..+...||++|| |++.-+...+.-.- ....+|+..||-
T Consensus 94 ~v~~~~~~~~~~~------~~~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 94 QVDELTAQVKAFN------TKLPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHHHHHHC------SSCCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHHHHhC------CCCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 2323222221100 012457899999 88888877664321 012578888884
No 45
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=31.17 E-value=2e+02 Score=26.32 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeec----CchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 010042 68 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEK----APDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 142 (519)
Q Consensus 68 ~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~----~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GG 142 (519)
.|.||.=..| -..+.++....|....+ |++... .|+... ++.+..+ +..-.+.|.++||
T Consensus 9 ~V~IimgS~S----D~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~-~~~~~a~-----------~~g~~ViIa~AG~ 72 (174)
T 3lp6_A 9 RVGVIMGSDS----DWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMF-SYARGAA-----------ARGLEVIIAGAGG 72 (174)
T ss_dssp SEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHH-HHHHHHH-----------HHTCCEEEEEEES
T ss_pred eEEEEECcHH----hHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHH-HHHHHHH-----------hCCCCEEEEecCc
Confidence 3666654444 34455555555555444 666542 233322 1222221 0112356889999
Q ss_pred chHHHHHHHHHhcCCCCCCCCEEEeeCCCCc
Q 010042 143 DGTASWLLGVVSDLKLPHSPPVATVPLGTGN 173 (519)
Q Consensus 143 DGTV~~Vln~l~~~~~~~~~plgiIPlGTGN 173 (519)
.+-+--|+.++.. .|.||+ |.-+++
T Consensus 73 aa~LpgvvA~~t~-----~PVIgV-P~~~~~ 97 (174)
T 3lp6_A 73 AAHLPGMVAAATP-----LPVIGV-PVPLGR 97 (174)
T ss_dssp SCCHHHHHHHHCS-----SCEEEE-EECCSS
T ss_pred hhhhHHHHHhccC-----CCEEEe-eCCCCC
Confidence 9999999998854 355665 666653
No 46
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=29.59 E-value=13 Score=28.40 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=9.6
Q ss_pred EEEEcCchHH
Q 010042 137 LIVAGGDGTA 146 (519)
Q Consensus 137 VIV~GGDGTV 146 (519)
|+|++||||+
T Consensus 41 ViVg~~dgtv 50 (65)
T 2x9a_A 41 IGIGYDNDTS 50 (65)
T ss_dssp EEEEETTTTE
T ss_pred EEEECCCCCE
Confidence 9999999997
No 47
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=29.47 E-value=16 Score=35.84 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=12.3
Q ss_pred CcEEEEEcCchHHHH
Q 010042 134 RLRLIVAGGDGTASW 148 (519)
Q Consensus 134 ~~~VIV~GGDGTV~~ 148 (519)
.-|+|||||+||-+.
T Consensus 46 ~q~~i~~g~~~t~~~ 60 (275)
T 3gw6_A 46 GQRIIFCGGEGTSST 60 (275)
T ss_dssp GCEEEEESSSSSSTT
T ss_pred ccEEEEecCCCCCCC
Confidence 358999999999654
No 48
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=27.10 E-value=2.6e+02 Score=25.66 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 010042 67 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 145 (519)
Q Consensus 67 ~~vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGT 145 (519)
..|.||.=..| -..+.+.....|....+ |++..-......+++..-.+... +..-.+.|.++||.|-
T Consensus 22 ~~V~IimGS~S----D~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~--------~~g~~ViIa~AG~aa~ 89 (182)
T 1u11_A 22 PVVGIIMGSQS----DWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAA--------ERGLNVIIAGAGGAAH 89 (182)
T ss_dssp CSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTT--------TTTCCEEEEEEESSCC
T ss_pred CEEEEEECcHH----HHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHH--------hCCCcEEEEecCchhh
Confidence 34777765444 34455555555554444 77654322221221211111100 0011356889999999
Q ss_pred HHHHHHHHhcCCCCCCCCEEEeeCCCC
Q 010042 146 ASWLLGVVSDLKLPHSPPVATVPLGTG 172 (519)
Q Consensus 146 V~~Vln~l~~~~~~~~~plgiIPlGTG 172 (519)
+--|+.++.. .|.||+ |.-++
T Consensus 90 LpgvvA~~t~-----~PVIgV-P~~~~ 110 (182)
T 1u11_A 90 LPGMCAAWTR-----LPVLGV-PVESR 110 (182)
T ss_dssp HHHHHHHHCS-----SCEEEE-EECCT
T ss_pred hHHHHHhccC-----CCEEEe-eCCCC
Confidence 9999998854 455666 65554
No 49
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=26.59 E-value=3.6e+02 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=23.2
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCC
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGT 171 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGT 171 (519)
+.|.++||.+-+--|+.++.. .|.||+ |.-+
T Consensus 64 ViIa~AG~aa~LpgvvA~~t~-----~PVIgV-P~~~ 94 (169)
T 3trh_A 64 VFIAAAGLAAHLAGTIAAHTL-----KPVIGV-PMAG 94 (169)
T ss_dssp EEEEEECSSCCHHHHHHHTCS-----SCEEEE-ECCC
T ss_pred EEEEECChhhhhHHHHHhcCC-----CCEEEe-ecCC
Confidence 457899999999999988753 455666 6543
No 50
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.33 E-value=1.9e+02 Score=26.01 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCCCCCC
Q 010042 83 GKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHS 161 (519)
Q Consensus 83 ~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~~~~~ 161 (519)
..+.+.....|....+ |++..-......+++ . +++.+....+.|.++||.|-+--|+.++.. .
T Consensus 12 ~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~----~-------~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~-----~ 75 (157)
T 2ywx_A 12 LKIAEKAVNILKEFGVEFEVRVASAHRTPELV----E-------EIVKNSKADVFIAIAGLAAHLPGVVASLTT-----K 75 (157)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHH----H-------HHHHHCCCSEEEEEEESSCCHHHHHHTTCS-----S
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHH----H-------HHHHhcCCCEEEEEcCchhhhHHHHHhccC-----C
Confidence 4455555555555444 776553322211111 1 112222335678899999999999987643 4
Q ss_pred CCEEEeeC
Q 010042 162 PPVATVPL 169 (519)
Q Consensus 162 ~plgiIPl 169 (519)
|.||+ |.
T Consensus 76 PVIgV-P~ 82 (157)
T 2ywx_A 76 PVIAV-PV 82 (157)
T ss_dssp CEEEE-EE
T ss_pred CEEEe-cC
Confidence 55666 65
No 51
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=24.04 E-value=1.4e+02 Score=34.38 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=28.9
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCC---CCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLP---HSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~---~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+. .|.+.... ..+++--||-=--||++
T Consensus 690 d~LvvIGGdgS~~~a~-~L~~~~~~y~~~~I~vVGIPkTIDNDl~ 733 (989)
T 3opy_A 690 DGLIIIGGFEAFTALY-ELDAARAQYPIFNIPMCCLPATVSNNVP 733 (989)
T ss_dssp SEEEEEESHHHHHHHH-HHHHHTTTCGGGCSCEEEEEBCSSCCCT
T ss_pred CEEEEeCCchHHHHHH-HHHHHHhhCCCcCCcEEeccccccCCCC
Confidence 4699999999986543 44332111 25788889999999995
No 52
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.56 E-value=3.3e+02 Score=27.62 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=60.2
Q ss_pred cccccCceeecCCc-cc---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cEEEEeecCchhHHHHHHHHH
Q 010042 44 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTL 117 (519)
Q Consensus 44 ~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV~dl~~~~p~~al~~~~~~l 117 (519)
.|..|..++..... .. .......++++||..+.+-... .+.+.+.+.|... .+.......|..-++.+.+.+
T Consensus 17 ~~~~p~~i~~G~g~l~~l~~~l~~~g~~r~liVtd~~~~~~~--g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~ 94 (407)
T 1vlj_A 17 VFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKN--GVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAV 94 (407)
T ss_dssp EECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHS--SHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHH
T ss_pred eEecCCeEEECcCHHHHHHHHHHHcCCCeEEEEECchHHhhc--cHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHH
Confidence 45668877665432 11 1111123688888864332111 2456666666432 222222212222222233333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCC---------------CCCCCCEEEeeC--CCCcchhhc
Q 010042 118 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLK---------------LPHSPPVATVPL--GTGNNIPFS 178 (519)
Q Consensus 118 ~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~---------------~~~~~plgiIPl--GTGNDlAR~ 178 (519)
+.+++ .+...||++|| |++.-+...+...- ....+|+..||- |||--....
T Consensus 95 ~~~~~---------~~~D~IIavGG-GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSevt~~ 162 (407)
T 1vlj_A 95 EVAKK---------EKVEAVLGVGG-GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGN 162 (407)
T ss_dssp HHHHH---------TTCSEEEEEES-HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSE
T ss_pred HHHHh---------cCCCEEEEeCC-hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcchhhcCe
Confidence 22211 13356888888 88888777664320 114678888995 555444433
No 53
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=21.87 E-value=1.5e+02 Score=33.33 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=27.8
Q ss_pred cEEEEEcCchHHHHHHH----------HHhcC--------CCCCCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLG----------VVSDL--------KLPHSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln----------~l~~~--------~~~~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||+.-+.. .|.+. +....+++--||-=--||++
T Consensus 111 d~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 111 TNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp CEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred CEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCC
Confidence 46999999999875432 22111 01125677778988899997
No 54
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=20.82 E-value=3.2e+02 Score=24.51 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred cEEEEEcCchHHHHHHHHHhcCCCCCCCCEEEeeCCC
Q 010042 135 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGT 171 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~~~~~~~plgiIPlGT 171 (519)
+.|.++||.+-+--|+.++.. .|.||+ |.-+
T Consensus 61 ViIa~AG~aa~LpgvvA~~t~-----~PVIgV-P~~~ 91 (159)
T 3rg8_A 61 LYITIAGRSNALSGFVDGFVK-----GATIAC-PPPS 91 (159)
T ss_dssp EEEEECCSSCCHHHHHHHHSS-----SCEEEC-CCCC
T ss_pred EEEEECCchhhhHHHHHhccC-----CCEEEe-eCCC
Confidence 457789999999999998854 355665 5433
No 55
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=20.81 E-value=1.7e+02 Score=29.53 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=59.8
Q ss_pred cccccCceeecCCcc-c---ccCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHhccC--cEEEEeecCchhHHHHHHHHH
Q 010042 44 NYYIPNYILVSGSEV-Q---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTL 117 (519)
Q Consensus 44 ~~~ip~~~~~~~~~~-~---~~~~~~~~~vlvivNPkSG~~~g~~~l~~~~~~L~~~--qV~dl~~~~p~~al~~~~~~l 117 (519)
.|.+|..++...... . .....-.++++|+..+..-. ..+.+.+.+.|... .+..+....+..-++.+.+.+
T Consensus 5 ~f~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 81 (386)
T 1rrm_A 5 RMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQ---CGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 81 (386)
T ss_dssp EEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHH---TTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred cccCCceEEECcCHHHHHHHHHHHcCCCEEEEEECcchhh---chHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 467788776654321 1 11111136888888654321 12566666666432 232222212222222233333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhcCC---C--------------CCCCCEEEeeC--CCCcchhh
Q 010042 118 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLK---L--------------PHSPPVATVPL--GTGNNIPF 177 (519)
Q Consensus 118 ~~l~~~~d~~a~~~~~~~~VIV~GGDGTV~~Vln~l~~~~---~--------------~~~~plgiIPl--GTGNDlAR 177 (519)
+.+++ .+...||++|| |++.-+...+...- - ...+|+..||- |||--...
T Consensus 82 ~~~~~---------~~~d~IIavGG-Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSevt~ 150 (386)
T 1rrm_A 82 GVFQN---------SGADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTI 150 (386)
T ss_dssp HHHHH---------HTCSEEEEEES-HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCS
T ss_pred HHHHh---------cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchhhhCC
Confidence 22211 13357888888 88887776553210 0 23678999995 66544433
No 56
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=20.52 E-value=1.6e+02 Score=33.11 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=29.0
Q ss_pred cEEEEEcCchHHHHHHHHHhcC-CCC--CCCCEEEeeCCCCcchh
Q 010042 135 LRLIVAGGDGTASWLLGVVSDL-KLP--HSPPVATVPLGTGNNIP 176 (519)
Q Consensus 135 ~~VIV~GGDGTV~~Vln~l~~~-~~~--~~~plgiIPlGTGNDlA 176 (519)
..+|++|||||..-+.. |.+. ... ..+++--||-=--||++
T Consensus 485 d~LvvIGGdgS~~~a~~-L~~~~~~~~~~~i~vIgiPkTIDNDl~ 528 (787)
T 3o8o_A 485 DGLIILGGFEGFRSLKQ-LRDGRTQHPIFNIPMCLIPATVSNNVP 528 (787)
T ss_dssp SEEEEEESHHHHHHHHH-HHHHTTTCGGGGSCEEEEEBCTTCCCT
T ss_pred CEEEEeCCchHHHHHHH-HHHHHHhcCccCCceeecccccccCCC
Confidence 46999999999876543 3321 111 25788889999999996
No 57
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.12 E-value=4.7e+02 Score=23.98 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=45.4
Q ss_pred CCe-EEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEEeecCchhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 010042 66 SCP-VLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 143 (519)
Q Consensus 66 ~~~-vlvivNPkSG~~~g~~~l~~~~~~L~~~qV-~dl~~~~p~~al~~~~~~l~~l~~~~d~~a~~~~~~~~VIV~GGD 143 (519)
++| |-||.=+.| -..+.+...+.|....| |++..-......+++..-++... +..-.+.|.++||.
T Consensus 21 mkp~V~IimGS~S----D~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~--------~~g~~ViIa~AG~a 88 (181)
T 4b4k_A 21 MKSLVGVIMGSTS----DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETAR--------ERGLKVIIAGAGGA 88 (181)
T ss_dssp -CCSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTT--------TTTCCEEEEEECSS
T ss_pred CCccEEEEECCHh----HHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHH--------hcCceEEEEecccc
Confidence 455 556665444 34566666666766555 66654222221122222111100 00112457789999
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEeeCC
Q 010042 144 GTASWLLGVVSDLKLPHSPPVATVPLG 170 (519)
Q Consensus 144 GTV~~Vln~l~~~~~~~~~plgiIPlG 170 (519)
+-+--++.++.. .|.||+ |.-
T Consensus 89 ahLpGvvAa~T~-----~PVIGV-Pv~ 109 (181)
T 4b4k_A 89 AHLPGMVAAKTN-----LPVIGV-PVQ 109 (181)
T ss_dssp CCHHHHHHTTCC-----SCEEEE-ECC
T ss_pred ccchhhHHhcCC-----CCEEEE-ecC
Confidence 999999877543 355665 663
Done!